<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-17 23:58:11"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E315384" ref_strand="+" ref_description="SGN-E315384 [cTOA-22-G21]">
      <seq>tcatgtaaaaagtccattgagggttgttccgttgtttgaaaagcttgctgatctcgagtctgcacctgcttctgttgctcggttgttctccatagattggtacagaaaccgtatcaatgggaaacaagaagttatgattgggtattctgattccggtaaggatgctggccgactatctgcagcttggcaattgtacaaggctcaagaggaacttgtaaaggtggcaaaagaatttggagtaaagctaacaatgttccatggccgaggtgggactgtaggaaggggagggggtcccacccaccttgctattttatcacaacccccagacacaattcatggctcacttcgtgtgactgttcaaggtgaagttattgaacagtcatttggggaggaacacctgtgctttagaactcttcagcgtttcacagcagctacacttgagcatggaatgaacccccctgtggctcctaatccagagtggcgtgccctcttggatgagatgtctgttgttgctacgaaagagtatcggtctttagtgttccaggatccacgatttgttgaatacttccgccttgcaaccccagaattagaatatggtcgcatgaacattggaagtcgcccagccaaaaggaagccaagtggtgggattgaatctcttcgagctattccatggatctttgcatggactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="+" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="1" stop="1231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="534" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="574" r_length="534" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="535" i_stop="816" i_length="282">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="817" g_stop="931" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="689" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="+" ref_id="SGN-E315384" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="534"/>
          <exon e_start="817" e_stop="931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGCTGATCTCGAGTCTGCACCTGCTTCTGTTGCTCGGTTGTTCTCCATAGATTGGTACAGAAACCGTATCAATGGGAAACAAGAAGTTATGATTGGGTATTCTGATTCCGGTAAGGATGCTGGCCGACTATCTGCAGCTTGGCAATTGTACAAGGCTCAAGAGGAACTTGTAAAGGTGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTTGTGAGTATATTCAAGTTACTTCATAAGTTGATTTGAACTGCTTTTGAATGACTCTTAATCATAATAGAAAAAGAGGTATAAGAAAAAAAAATCCAGAAACCATAAGATTCAAAGAATTGAAGGGGACACAAACAGTAGATTTAATTAGGTGAAAGCAGTCGGTTTAATAATTAGTCAAAGTAGGTATGAATGGCAATTGCATTTCAGACATTGATGACTTATTTGCCTTCAGCCCGATGCCTATGAAACTGAACTTCCTTTTTATGTTTGTCTAAAATGCAGGCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTC</genome_strand>
        <mrna_strand>AAGCTTGCTGATCTCGAGTCTGCACCTGCTTCTGTTGCTCGGTTGTTCTCCATAGATTGGTACAGAAACCGTATCAATGGGAAACAAGAAGTTATGATTGGGTATTCTGATTCCGGTAAGGATGCTGGCCGACTATCTGCAGCTTGGCAATTGTACAAGGCTCAAGAGGAACTTGTAAAGGTGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTT..........................................................................................................................................................................................................................................................................................GCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E474857" ref_strand="+" ref_description="SGN-E474857 [cSTB-38-O1]">
      <seq>agaaaccgtatcaatgggaaacaagaagttatgattgggtattctgattcgggtaaggatgctggccgactatctgcagcttggcaattgtacaaggctcaagaggaacttgtaaaggtggcaaaagaatttggagtaaagctaacaatgttccatggccgaagtgggactgttggaaggggagggggtcccacccaccttgctattttatcacaaccccctgtggctccaaagccagagtggcgtgccctattggatgagatgtctgttattgctacaaaagagtatcggtcttttgtgttccaggatccacgatttgttgaatacttccgccttgcaaccccagaattagaatatggtcgcatgaacattggaagtcgcccggccaaaaggaagccaagtggtgggattgaatctcttcgagctattccatggatctttgcatggactcagacgaggtttcatctcccagtctggcttggctttggggctgcattcaagcacgttattgagaaggatataagaaatctgcaaatgctcaaggatatgtacaacggatggcctttctttagagtgacacttgacttactcgaaatggtcttcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="+" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="1" stop="1385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64" g_stop="279" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="280" i_stop="414" i_length="135">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="415" g_stop="534" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="336" r_length="120" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="535" i_stop="816" i_length="282">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="817" g_stop="1085" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="605" r_length="269" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="+" ref_id="SGN-E474857" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E474857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64" e_stop="279"/>
          <exon e_start="415" e_stop="534"/>
          <exon e_start="817" e_stop="1085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACCGTATCAATGGGAAACAAGAAGTTATGATTGGGTATTCTGATTCCGGTAAGGATGCTGGCCGACTATCTGCAGCTTGGCAATTGTACAAGGCTCAAGAGGAACTTGTAAAGGTGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTTGTGAGTATATTCAAGTTACTTCATAAGTTGATTTGAACTGCTTTTGAATGACTCTTAATCATAATAGAAAAAGAGGTATAAGAAAAAAAAATCCAGAAACCATAAGATTCAAAGAATTGAAGGGGACACAAACAGTAGATTTAATTAGGTGAAAGCAGTCGGTTTAATAATTAGTCAAAGTAGGTATGAATGGCAATTGCATTTCAGACATTGATGACTTATTTGCCTTCAGCCCGATGCCTATGAAACTGAACTTCCTTTTTATGTTTGTCTAAAATGCAGGCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGC</genome_strand>
        <mrna_strand>AGAAACCGTATCAATGGGAAACAAGAAGTTATGATTGGGTATTCTGATTCGGGTAAGGATGCTGGCCGACTATCTGCAGCTTGGCAATTGTACAAGGCTCAAGAGGAACTTGTAAAGGTGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAAGTGGGACTGTTGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAA.......................................................................................................................................CCCCCTGTGGCTCCAAAGCCAGAGTGGCGTGCCCTATTGGATGAGATGTCTGTTATTGCTACAAAAGAGTATCGGTCTTTTGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTT..........................................................................................................................................................................................................................................................................................GCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCGGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACGAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAACGGATGGCCTTTCTTTAGAGTGACACTTGACTTACTCGAAATGGTCTTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E739386" ref_strand="+" ref_description="SGN-E739386 [LC17BA02]">
      <seq>ccaatcaagaagttatgattgggtattctgattccggtaaggatgctggccgactatctgcagcttggcaattgtacaaggctcaagaggaacttgtaaaggtggcaaaagaatttggagtaaagctaacaatgttccatggccgaggtgggactgtaggaaggggagggggtcccacccaccttgctattttatcacaacccccagacacaattcatggctcacttcgtgtgactgttcaaggtgaagttattgaacagtcatttggggaggaacacctgtgctttagaactcttcagcgtttcacagcagctacacttgagcatggaatgaacccccctgtggctcctaatccagagtggcgtgccctcttggatgagatgtctgttgttgctacgaaagagtatcggtctttagtgttccaggatccacgatttgttgaatacttccgccttgcaaccccagaattagaatatggtcgcatgaacattggaagtcgcccagccaaaaggaagccaagtggtgggattgaatctcttcgagctattccatggatctttgcatggactcagacaaggtttcatctcccagtctggcttggctttggggctgcattcaagcacgttattgagaaggatataagaaatctgcaaatgctcaaggatatgtacaatggatggcctttctttagagtgacacttgacttgctcgaaatggtcttcgctaagggagaccctggtattgctgcattgtatgataaacttttagtatccgaagatctgtggccgcttggagagcgattgagatccaaatacgaagaaacaaagggctttctccttcaggttgctgggcacaaggatctattggaaggagatccatacttgaggcaaaggctcaaacttcgtgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="+" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="1" stop="1658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80" g_stop="534" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="535" i_stop="816" i_length="282">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="817" g_stop="1203" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="842" r_length="387" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1204" i_stop="1291" i_length="88">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1292" g_stop="1358" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="843" r_stop="909" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="+" ref_id="SGN-E739386" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>909</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80" e_stop="534"/>
          <exon e_start="817" e_stop="1203"/>
          <exon e_start="1292" e_stop="1358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAACAAGAAGTTATGATTGGGTATTCTGATTCCGGTAAGGATGCTGGCCGACTATCTGCAGCTTGGCAATTGTACAAGGCTCAAGAGGAACTTGTAAAGGTGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTTGTGAGTATATTCAAGTTACTTCATAAGTTGATTTGAACTGCTTTTGAATGACTCTTAATCATAATAGAAAAAGAGGTATAAGAAAAAAAAATCCAGAAACCATAAGATTCAAAGAATTGAAGGGGACACAAACAGTAGATTTAATTAGGTGAAAGCAGTCGGTTTAATAATTAGTCAAAGTAGGTATGAATGGCAATTGCATTTCAGACATTGATGACTTATTTGCCTTCAGCCCGATGCCTATGAAACTGAACTTCCTTTTTATGTTTGTCTAAAATGCAGGCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAGGTACAGAAATTAATACTATTATTTTACCTCATCACCACAAAGCTCACATCCTATGGAAAATCTCTTTTAATTGCGCTGCTTGTCATAGGTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATT</genome_strand>
        <mrna_strand>CCAATCAAGAAGTTATGATTGGGTATTCTGATTCCGGTAAGGATGCTGGCCGACTATCTGCAGCTTGGCAATTGTACAAGGCTCAAGAGGAACTTGTAAAGGTGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTT..........................................................................................................................................................................................................................................................................................GCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAG........................................................................................GTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E737335" ref_strand="+" ref_description="SGN-E737335 [LC09BE02]">
      <seq>cccttaaagaagttatgattgggtattctgattccggtaagccttctggccgactatctgcagcttggcaattgtacaaggctcaagaggaacttgcaaaggtggcaaaagaatttgcgagtaaagctaacaatgttccatggccgaggtgggactgtaggaaggggagggggtcccacccaccttgctattttatcacaacccccagacacaattcatggctcacttcgtgtgactgttcaaggcgaagttattgaacagtcatttggggaggaacacctgagctttaaaactcttccgcgtttcacaccagctacacttgagcatggaatgaaccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="+" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="1" stop="718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86" g_stop="418" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="340" r_length="334" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="+" ref_id="SGN-E737335" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86" e_stop="418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGTTATGATTGGGTATTCTGATTCCGGTAAGGATGCTGGCCGACTATCTGCAGCTTGGCAATTGTACAAGGCTCAAGAGGAACTTGTAAAGGTGGCAAAAGAATTTG-GAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCC</genome_strand>
        <mrna_strand>AAGAAGTTATGATTGGGTATTCTGATTCCGGTAAGCCTTCTGGCCGACTATCTGCAGCTTGGCAATTGTACAAGGCTCAAGAGGAACTTGCAAAGGTGGCAAAAGAATTTGCGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGCGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGAGCTTTAAAACTCTTCCGCGTTTCACACCAGCTACACTTGAGCATGGAATGAACCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E210310" ref_strand="+" ref_description="SGN-E210310 [cLEC-35-I10]">
      <seq>tggccgactatctgcagcttggcaattgtacaaggctcaagaggaacttgtaaaggtggcaaaagaatttggagtaaagctaacaatgttccatggccgaggtgggactgtaggaaggggagggggtcccacccaccttgctattttatcacaacccccagacacaattcatggctcacttcgtgtgactgttcaaggtgaagttattgaacagtcatttggggaggaacacctgtgctttagaactcttcagcgtttcacagcagctacacttgagcatggaatgaacccccctgtggctcctaatccagagtggcgtgccctcttggatgagatgtctgttgttgctacgaaagagtatcggtctttagtgttccaggatccacgatttgttgaatacttccgccttgcaaccccagaattagaatatggtcgcatgaacattggaagtcgcccagccaaaaggaagccaagtggtgggattgaatctcttcgagctattccatggatctttgcatggactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="+" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="1" stop="1231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126" g_stop="534" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="535" i_stop="816" i_length="282">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="817" g_stop="931" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="524" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="+" ref_id="SGN-E210310" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126" e_stop="534"/>
          <exon e_start="817" e_stop="931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCCGACTATCTGCAGCTTGGCAATTGTACAAGGCTCAAGAGGAACTTGTAAAGGTGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTTGTGAGTATATTCAAGTTACTTCATAAGTTGATTTGAACTGCTTTTGAATGACTCTTAATCATAATAGAAAAAGAGGTATAAGAAAAAAAAATCCAGAAACCATAAGATTCAAAGAATTGAAGGGGACACAAACAGTAGATTTAATTAGGTGAAAGCAGTCGGTTTAATAATTAGTCAAAGTAGGTATGAATGGCAATTGCATTTCAGACATTGATGACTTATTTGCCTTCAGCCCGATGCCTATGAAACTGAACTTCCTTTTTATGTTTGTCTAAAATGCAGGCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTC</genome_strand>
        <mrna_strand>TGGCCGACTATCTGCAGCTTGGCAATTGTACAAGGCTCAAGAGGAACTTGTAAAGGTGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTT..........................................................................................................................................................................................................................................................................................GCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E416616" ref_strand="+" ref_description="SGN-E416616 [STM-23-G2]">
      <seq>ctgcagcttggcaattgtacaaggctcaagagtggacttgtaaaggtggcaaaagaatttggagtaaagctaacaatgttccatggccgaggtgggaactgttggaaggggagggggtcccacccaccttgctattttatcacaaccccctgacacaattcttggctcacttcgtgtgactgttcaaggtgaagttattgaacagtcatttggggaggaacacctgtgctttagaactcttcagcgtttcacagcagctacactagagcatggaatgaacccccctgtggctccaaagctagagtggcgtgccctattggatgagatgtctgttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="+" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="1" stop="771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137" g_stop="471" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="+" ref_id="SGN-E416616" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137" e_stop="471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAGCTTGGCAATTGTACAAGGCTCAAGAG-GAACTTGTAAAGGTGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGG-ACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTT</genome_strand>
        <mrna_strand>CTGCAGCTTGGCAATTGTACAAGGCTCAAGAGTGGACTTGTAAAGGTGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGAACTGTTGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCTGACACAATTCTTGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTAGAGCATGGAATGAACCCCCCTGTGGCTCCAAAGCTAGAGTGGCGTGCCCTATTGGATGAGATGTCTGTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E342401" ref_strand="+" ref_description="SGN-E342401 [cTOF-8-E11]">
      <seq>tggcaaaagaatttggagtaaagctaacaatgttccatggccgaggtgggactgtaggaaggggagggggtcccacccaccttgctattttatcacaacccccagacacaattcatggctcacttcgtgtgactgttcaaggtgaagttattgaacagtcatttggggaggaacacctgtgctttagaactcttcagcgtttcacagcagctacacttgagcatggaatgaacccccctgtggctcctaatccagagtggcgtgccctcttggatgagatgtctgttgttgctacgaaagagtatcggtctttagtgttccaggatccacgatttgttgaatacttccgccttgcaaccccagaattagaatatggtcgcatgaacattggaagtcgcccagccaaaaggaagccaagtggtgggattgaatctcttcgagctattccatggatctttgcatggactcagacaaggtttcatctcccagtctggcttggctttggggctgcattcaagcacgttattgagaaagatataagaaatctgcaaatgctcaaggatatgtacaatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="+" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="1" stop="1340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="182" g_stop="534" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="535" i_stop="816" i_length="282">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="817" g_stop="1040" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="577" r_length="224" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="+" ref_id="SGN-E342401" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="182" e_stop="534"/>
          <exon e_start="817" e_stop="1040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTTGTGAGTATATTCAAGTTACTTCATAAGTTGATTTGAACTGCTTTTGAATGACTCTTAATCATAATAGAAAAAGAGGTATAAGAAAAAAAAATCCAGAAACCATAAGATTCAAAGAATTGAAGGGGACACAAACAGTAGATTTAATTAGGTGAAAGCAGTCGGTTTAATAATTAGTCAAAGTAGGTATGAATGGCAATTGCATTTCAGACATTGATGACTTATTTGCCTTCAGCCCGATGCCTATGAAACTGAACTTCCTTTTTATGTTTGTCTAAAATGCAGGCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATG</genome_strand>
        <mrna_strand>TGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTT..........................................................................................................................................................................................................................................................................................GCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAAGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E709358" ref_strand="+" ref_description="SGN-E709358 [FA51CE12]">
      <seq>taacaatgttccatggccgaggtgggactgtaggaaggggagggggtcccacccaccttgctattttatcacaacccccagacacaattcatggctcacttcgtgtgactgttcaaggtgaagttattgaacagtcatttggggaggaacacctgtgctttagaactcttcagcgtttcacagcagctacacttgagcatggaatgaacccccctgtggctcctaatccagagtggcgtgccctcttggatgagatgtctgttgttgctacgaaagagtatcggtctttagtgttccaggatccacgatttgttgaatacttccgccttgcaaccccagaattacaatatggtcgcatgaacattggaagtcgcccagccaaaaggaagccaagcggtgggattgaatctcttcgagctattccatggatctttgcatggactcagacaaggtttcatctcccagtctggcttggctttggggctgcattcaagcacgttattgagaaggatataagaaatctgcaaatgctcaaggatatgtacaatggatggcctttctttacagtgacacttgacttgctcgaaatggtcttcactaagggagaccctggtattgctgcattgtatgataaactttttagtatccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="+" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="1" stop="1436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="206" g_stop="534" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="535" i_stop="816" i_length="282">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="817" g_stop="1136" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="650" r_length="321" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="+" ref_id="SGN-E709358" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="206" e_stop="534"/>
          <exon e_start="817" e_stop="1136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTTGTGAGTATATTCAAGTTACTTCATAAGTTGATTTGAACTGCTTTTGAATGACTCTTAATCATAATAGAAAAAGAGGTATAAGAAAAAAAAATCCAGAAACCATAAGATTCAAAGAATTGAAGGGGACACAAACAGTAGATTTAATTAGGTGAAAGCAGTCGGTTTAATAATTAGTCAAAGTAGGTATGAATGGCAATTGCATTTCAGACATTGATGACTTATTTGCCTTCAGCCCGATGCCTATGAAACTGAACTTCCTTTTTATGTTTGTCTAAAATGCAGGCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAAC-TTTTAGTATCCGA</genome_strand>
        <mrna_strand>TAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTT..........................................................................................................................................................................................................................................................................................GCAACCCCAGAATTACAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGCGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTACAGTGACACTTGACTTGCTCGAAATGGTCTTCACTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTTAGTATCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E276002" ref_strand="+" ref_description="SGN-E276002 [cLEN-12-P6]">
      <seq>tcacaacccccagacacaattcatggctcacttcgtgtgactgttcaaggtgaagttattgaacagtcatttggggaggaacacctgtgctttagaactcttcagcgtttcacagcagctacacttgagcatggaatgaacccccctgtggctcctaatccagagtggcgtgccctcttggatgagatgtctgttgttgctacgaaagagtatcggtctttagtgttccaggatccacgatttgttgaatacttccgccttgcaaccccagaattagaatatggtcgcatgaacattggaagtcgcccagccaaaaggaagccaagtggtgggattgaatctcttcgagctattccatggatctttgcatggactcagacaaggtttcatctcccagtctggcttggctttggggctgcattcaagcacgttattgagaaggatataagaaatctgcaaatgctcaaggatatgtacaatggatggcctttctttagagtgacacttgacttgctcgaaatggtcttcgctaagggagaccctggtattgctgcattgtatgataaacttttagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="+" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="1" stop="1432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="274" g_stop="534" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="535" i_stop="816" i_length="282">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="817" g_stop="1132" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="577" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="+" ref_id="SGN-E276002" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="274" e_stop="534"/>
          <exon e_start="817" e_stop="1132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTTGTGAGTATATTCAAGTTACTTCATAAGTTGATTTGAACTGCTTTTGAATGACTCTTAATCATAATAGAAAAAGAGGTATAAGAAAAAAAAATCCAGAAACCATAAGATTCAAAGAATTGAAGGGGACACAAACAGTAGATTTAATTAGGTGAAAGCAGTCGGTTTAATAATTAGTCAAAGTAGGTATGAATGGCAATTGCATTTCAGACATTGATGACTTATTTGCCTTCAGCCCGATGCCTATGAAACTGAACTTCCTTTTTATGTTTGTCTAAAATGCAGGCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTAT</genome_strand>
        <mrna_strand>TCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTT..........................................................................................................................................................................................................................................................................................GCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E275429" ref_strand="+" ref_description="SGN-E275429 [cLEN-10-B4]">
      <seq>ttcgtgtgactgttcaaggtgaagttattgaacagtcatttggggaggaacacctgtgctttagaactcttcagcgtttcacagcagctacacttgagcatggaatgaacccccctgtggctcctaatccagagtggcgtgccctcttggatgagatgtctgttgttgctacgaaagagtatcggtctttagtgttccaggatccacgatttgttgaatacttccgccttgcaaccccagaattagaatatggtcgcatgaacattggaagtcgcccagccaaaaggaagccaagtggtgggattgaatctcttcgagctattccatggatctttgcatggactcagacaaggtttcatctcccagtctggcttggctttggggctgcattcaagcacgttactgagaaggatataagaaatctgcaaatgctcaaggatatgtacaatggatggcctttctttagagtgacacttgacttgctcgaaatggtcttcgctaagggagaccctggtattgctgcattgtatgataaacttttagtatccgaagatctgtggccgcttggagagcgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="+" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="5" stop="1464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="305" g_stop="534" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="535" i_stop="816" i_length="282">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="817" g_stop="1164" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="578" r_length="348" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="+" ref_id="SGN-E275429" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="305" e_stop="534"/>
          <exon e_start="817" e_stop="1164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTTGTGAGTATATTCAAGTTACTTCATAAGTTGATTTGAACTGCTTTTGAATGACTCTTAATCATAATAGAAAAAGAGGTATAAGAAAAAAAAATCCAGAAACCATAAGATTCAAAGAATTGAAGGGGACACAAACAGTAGATTTAATTAGGTGAAAGCAGTCGGTTTAATAATTAGTCAAAGTAGGTATGAATGGCAATTGCATTTCAGACATTGATGACTTATTTGCCTTCAGCCCGATGCCTATGAAACTGAACTTCCTTTTTATGTTTGTCTAAAATGCAGGCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTG</genome_strand>
        <mrna_strand>TTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTT..........................................................................................................................................................................................................................................................................................GCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTACTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E403182" ref_strand="+" ref_description="SGN-E403182 [PPC-9-J22]">
      <seq>gttcaaggtgaagttattgaacagtcatttggggaggaacacttgtgctttagaactcttcagcgtttcacagcagctacacttgagcatggaatgaacccccctgtggctccaaagccagagtggcgtgccctattggatgagatgtctgttattgctacaaaagagtatcggtcttttgtgttccaggatccacgatttgttgaatacttccgccttgcaaccccagaattagaatatggtcgcatgaacattggaagtcgcccggccaaaaggaagccaagtggtgggattgaatctcttcgagctattccatggatctttgcatggactcagacgaggtttcatctnccagtctggctggggctttgggctgcattcaagcacgttattgagaaggatataagaaatctgcaaatgctcaaggatatgtacaacggatggcctttctttagagtgacacttgacttactcgnaatggtcttcgctaagggtgaccctggtattgctgcattgtacgataagcttttagtgtctgaagatctgtgggcgcttggagagcgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="+" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="16" stop="1463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="316" g_stop="534" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="535" i_stop="816" i_length="282">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="817" g_stop="1164" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="567" r_length="348" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="+" ref_id="SGN-E403182" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="316" e_stop="534"/>
          <exon e_start="817" e_stop="1164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTTGTGAGTATATTCAAGTTACTTCATAAGTTGATTTGAACTGCTTTTGAATGACTCTTAATCATAATAGAAAAAGAGGTATAAGAAAAAAAAATCCAGAAACCATAAGATTCAAAGAATTGAAGGGGACACAAACAGTAGATTTAATTAGGTGAAAGCAGTCGGTTTAATAATTAGTCAAAGTAGGTATGAATGGCAATTGCATTTCAGACATTGATGACTTATTTGCCTTCAGCCCGATGCCTATGAAACTGAACTTCCTTTTTATGTTTGTCTAAAATGCAGGCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTG</genome_strand>
        <mrna_strand>GTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACTTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCAAAGCCAGAGTGGCGTGCCCTATTGGATGAGATGTCTGTTATTGCTACAAAAGAGTATCGGTCTTTTGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTT..........................................................................................................................................................................................................................................................................................GCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCGGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACGAGGTTTCATCTNCCAGTCTGGCTGGGGCTTTGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAACGGATGGCCTTTCTTTAGAGTGACACTTGACTTACTCGNAATGGTCTTCGCTAAGGGTGACCCTGGTATTGCTGCATTGTACGATAAGCTTTTAGTGTCTGAAGATCTGTGGGCGCTTGGAGAGCGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E410491" ref_strand="+" ref_description="SGN-E410491 [PPI-17-O1]">
      <seq>aagttattgaacagtcatttggggaggaacacttgtgctttagaactcttcagcgtttcacagcagctacacttgagcatggaatgaacccccctgtggctccaaagccagagtggcgtgccctattggatgagatgtctgttattgctacaaaagagtatcggtcttttgtgttccaggatccacgatttgttgaatacttccgccttgcaaccccagaattagaatatggtcgcatgaacattggaagtcgcccggccaaaaggaagccaagtggtgggattgaatctcttcgagctattccatggatctttgcatggactcagacgaggtttcatctcccagtctggcttggctttggggctgcattcaagcacgttattgagaaggatataagaaatctgcaaatgctcaaggatatgtacaacggatggcctttctttagagtgacacttgacttactcgaaatggtcttcgctaagggtgaccctggtattgctgcattgtacgataagcttttagtgtctgaagatctgtggccgcttggagagcgattaagatccaaatatgaagaaacaaagggctttcntccttcangttgccgggcacaaggatctttttggaaggagatccatacttgangcaaaggctcaaacttcgtgactcttacattacgaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="+" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="26" stop="1673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="326" g_stop="534" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="535" i_stop="816" i_length="282">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="817" g_stop="1203" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="597" r_length="388" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1204" i_stop="1291" i_length="88">
            <donor d_prob="0.957" d_score="0.90"/>
            <acceptor a_prob="0.987" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1292" g_stop="1373" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="680" r_length="83" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="+" ref_id="SGN-E410491" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="326" e_stop="534"/>
          <exon e_start="817" e_stop="1203"/>
          <exon e_start="1292" e_stop="1373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTTGTGAGTATATTCAAGTTACTTCATAAGTTGATTTGAACTGCTTTTGAATGACTCTTAATCATAATAGAAAAAGAGGTATAAGAAAAAAAAATCCAGAAACCATAAGATTCAAAGAATTGAAGGGGACACAAACAGTAGATTTAATTAGGTGAAAGCAGTCGGTTTAATAATTAGTCAAAGTAGGTATGAATGGCAATTGCATTTCAGACATTGATGACTTATTTGCCTTCAGCCCGATGCCTATGAAACTGAACTTCCTTTTTATGTTTGTCTAAAATGCAGGCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTC-TCCTTCAGGTACAGAAATTAATACTATTATTTTACCTCATCACCACAAAGCTCACATCCTATGGAAAATCTCTTTTAATTGCGCTGCTTGTCATAGGTTGCTGGGCACAAGGATC-TATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCC</genome_strand>
        <mrna_strand>AAGTTATTGAACAGTCATTTGGGGAGGAACACTTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCAAAGCCAGAGTGGCGTGCCCTATTGGATGAGATGTCTGTTATTGCTACAAAAGAGTATCGGTCTTTTGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTT..........................................................................................................................................................................................................................................................................................GCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCGGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACGAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAACGGATGGCCTTTCTTTAGAGTGACACTTGACTTACTCGAAATGGTCTTCGCTAAGGGTGACCCTGGTATTGCTGCATTGTACGATAAGCTTTTAGTGTCTGAAGATCTGTGGCCGCTTGGAGAGCGATTAAGATCCAAATATGAAGAAACAAAGGGCTTTCNTCCTTCAN........................................................................................GTTGCCGGGCACAAGGATCTTTTTGGAAGGAGATCCATACTTGANGCAAAGGCTCAAACTTCGTGACTCTTACATTACGACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E726288" ref_strand="+" ref_description="SGN-E726288 [LA11BE10]">
      <seq>gggaggaacacctgtgctttagaactcttcagcgtttcacagcagctacacttgagcatggaatgaacccccctgtggctcctaatccagagtggcgtgccctcttggatgagatgtctgttgttgctacgaaagagtatcggtctttagtgttccaggatccacgatttgttgaatacttccgccttgcaaccccagaattagaatatggtcgcatgaacattggaagtcgcccagccaaaaggaagccaagtggtgggattgaatctcttcgagctattccatggatctttgcatggactcagacaaggtttcatctcccagtctggcttggctttggggctgcattcaagcacgttattgagaaggatataagaaatctgcaaatgctcaaggatatgtacaatggatggcctttctttagagtgacacttgacttgctcgaaatggtcttcgctaagggagaccctggtattgctgcattgtatgataaacttttagtatccgaagatctgtggccgcttggagagcgattgagatccaaatacgaagaaacaaagggctttctccttcaggttgctgggcacaaggatctattggaaggagatccatacttgaggcaaaggctcaaacttcgtgattcttacatcacgacccttaacgtaagccaagcatacacattgaaacgaattcgtgaccccaactacaatgtgaaggtcagacctcacctagacaaggagatcatggaatcaagcaaaccagctgctgaattagtgaagctgaatcctacgagcgagtatgcgcctggcttggaagacaccctcatcttgaccatgaaaggtattgctgctggaatgcagaacactggtttaagctaaggctattatgtatgtataataataagtgatatttgtctttcactttttataatcctatgtctgnntcagaataataatgatgagatgtttctgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="+" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47" stop="1989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="347" g_stop="534" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="535" i_stop="816" i_length="282">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="817" g_stop="1203" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="575" r_length="387" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1204" i_stop="1291" i_length="88">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1292" g_stop="1694" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="978" r_length="403" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="+" ref_id="SGN-E726288" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>978</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="347" e_stop="534"/>
          <exon e_start="817" e_stop="1203"/>
          <exon e_start="1292" e_stop="1694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTTGTGAGTATATTCAAGTTACTTCATAAGTTGATTTGAACTGCTTTTGAATGACTCTTAATCATAATAGAAAAAGAGGTATAAGAAAAAAAAATCCAGAAACCATAAGATTCAAAGAATTGAAGGGGACACAAACAGTAGATTTAATTAGGTGAAAGCAGTCGGTTTAATAATTAGTCAAAGTAGGTATGAATGGCAATTGCATTTCAGACATTGATGACTTATTTGCCTTCAGCCCGATGCCTATGAAACTGAACTTCCTTTTTATGTTTGTCTAAAATGCAGGCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAGGTACAGAAATTAATACTATTATTTTACCTCATCACCACAAAGCTCACATCCTATGGAAAATCTCTTTTAATTGCGCTGCTTGTCATAGGTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATA-TTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGGATT</genome_strand>
        <mrna_strand>GGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTT..........................................................................................................................................................................................................................................................................................GCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAG........................................................................................GTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTTAAGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTTGTCTTTCACTTTTTAT-AATCCTATGTCTGNNTCAGAATAATAATGATGAGATGTTTCTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E551904" ref_strand="+" ref_description="SGN-E551904 [cTSB-2-D21]">
      <seq>aatccagagtggcgtgccctcttggatgagatgtctgttgttgctacgaaagagtatcggtctttagtgttccaggatccacgatttgttgaatacttccgccttgcaaccccagaattagaatatggtcgcatgaacattggaagtcgcccagccaaaaggaagccaagtggtgggattgaatctcttcgagctattccatggatctttgcatggactcagacaaggtttcatctcccagtctggcttggctttggggctgcattcaagcacgttattgagaaggatataagaaatctgcaaatgctcaaggatatgtacaatggatggcctttctttagagtgacacttgacttgctcgaaatggtcttcgctaagggagaccctggtattgctgcattgtatgataaacttttagtatccgaagatctgtggccgcttggagagcgattgagatccaaatacgaagaaacaaagggctttctccttcaggttgctgggcacaaggatctattggaaggagatccatacttgaggcaaaggctcaaacttcgtgattcttacatcacgacccttaacgtaagccaagcatacacattgaaacgaattcgtgaccccaactacaatgtgaaggtcagacctcacctagacaaggagatcatggaatcaagcaaaccagctgctgaattagtgaagctgaatcctacgagcgagtatgcgcctgggtttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="+" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="130" stop="1829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="430" g_stop="534" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="535" i_stop="816" i_length="282">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="817" g_stop="1203" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="492" r_length="387" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1204" i_stop="1291" i_length="88">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1292" g_stop="1530" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="731" r_length="239" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="+" ref_id="SGN-E551904" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="430" e_stop="534"/>
          <exon e_start="817" e_stop="1203"/>
          <exon e_start="1292" e_stop="1530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTTGTGAGTATATTCAAGTTACTTCATAAGTTGATTTGAACTGCTTTTGAATGACTCTTAATCATAATAGAAAAAGAGGTATAAGAAAAAAAAATCCAGAAACCATAAGATTCAAAGAATTGAAGGGGACACAAACAGTAGATTTAATTAGGTGAAAGCAGTCGGTTTAATAATTAGTCAAAGTAGGTATGAATGGCAATTGCATTTCAGACATTGATGACTTATTTGCCTTCAGCCCGATGCCTATGAAACTGAACTTCCTTTTTATGTTTGTCTAAAATGCAGGCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAGGTACAGAAATTAATACTATTATTTTACCTCATCACCACAAAGCTCACATCCTATGGAAAATCTCTTTTAATTGCGCTGCTTGTCATAGGTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGA</genome_strand>
        <mrna_strand>AATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTT..........................................................................................................................................................................................................................................................................................GCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAG........................................................................................GTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGGTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E457156" ref_strand="+" ref_description="SGN-E457156 [cPRO-1-H23]">
      <seq>attggatgagatgtctgttattgctacaaaagagtatcggtcttttgtgttccaggatccacgatttgttgaatacttccgccttgcaaccccagaattagaatatggtcgcatgaacattggaagtcgcccggccaaaaggaagccaagtggtgggattgaatctcttcgagctattccatggatctttgcatggactcagacgaggtttcatctcccagtctggcttggctttggggctgcattcaagcacgttattgagaaggatataagaaatctgcaaatgctcaaggatatgtacaacggatggcctttctttagagtgacacttgacttactcgaaatggtcttcgctaagggtgaccctggtattgctgcattgtacgataagcttttagtgtctgaagatctgtggccgcttggagagcgattaagatctcaatatgaagaaacaaagggctttctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="+" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="151" stop="1499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="450" g_stop="534" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="535" i_stop="816" i_length="282">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="817" g_stop="1199" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="468" r_length="383" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="+" ref_id="SGN-E457156" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="450" e_stop="534"/>
          <exon e_start="817" e_stop="1199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTTGTGAGTATATTCAAGTTACTTCATAAGTTGATTTGAACTGCTTTTGAATGACTCTTAATCATAATAGAAAAAGAGGTATAAGAAAAAAAAATCCAGAAACCATAAGATTCAAAGAATTGAAGGGGACACAAACAGTAGATTTAATTAGGTGAAAGCAGTCGGTTTAATAATTAGTCAAAGTAGGTATGAATGGCAATTGCATTTCAGACATTGATGACTTATTTGCCTTCAGCCCGATGCCTATGAAACTGAACTTCCTTTTTATGTTTGTCTAAAATGCAGGCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCT</genome_strand>
        <mrna_strand>ATTGGATGAGATGTCTGTTATTGCTACAAAAGAGTATCGGTCTTTTGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTT..........................................................................................................................................................................................................................................................................................GCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCGGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACGAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAACGGATGGCCTTTCTTTAGAGTGACACTTGACTTACTCGAAATGGTCTTCGCTAAGGGTGACCCTGGTATTGCTGCATTGTACGATAAGCTTTTAGTGTCTGAAGATCTGTGGCCGCTTGGAGAGCGATTAAGATCTCAATATGAAGAAACAAAGGGCTTTCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E574855" ref_strand="+" ref_description="SGN-E574855 [34387]">
      <seq>ggaagcaagtggtgggattgaatctcttcgagcctataccatggatcttgccatggactcagacgaggtttcatctcccagtctggcttggctttggggctgcattcaagcacgttattgagaaggatataagaaatctgcaaatgctcaaggatatgtacaacggatggcctttctttagagtgacacttgacttactcgaaatggtcttcgctaagcggtgaccctggtattgctgcattgtacgataagcttttagtgtctgaagatctgtggccgcttggagagcgattaagatccaaatatgaagaaacaaagggctttctccttcaggttgccgggcacaaggatcttttggaaggagatccatacttgaggcaaaggctcaaacttcgtgactcttacattacgaccctcaatgtaagccaagcatacacattgaaacgaattcgcgagccctaactacaatgtgaaggtcagacctcatctagacaaggcagatcatggaatcaagcaaaccagctgctgaattagtgaagctgaatcctacgagcgagtatgcgcctggcttggaagacactcttatcttgaccatgaaaggtattgctgctggaatgcagaacactggtttaaggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="+" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="572" stop="1891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="872" g_stop="1203" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1204" i_stop="1291" i_length="88">
            <donor d_prob="0.957" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1292" g_stop="1583" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="627" r_length="294" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="+" ref_id="SGN-E574855" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E574855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="872" e_stop="1203"/>
          <exon e_start="1292" e_stop="1583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGCCAAGTGGTGGGATTGAATCTCTTCGAG-CTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAG-GGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAGGTACAGAAATTAATACTATTATTTTACCTCATCACCACAAAGCTCACATCCTATGGAAAATCTCTTTTAATTGCGCTGCTTGTCATAGGTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGA-CCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGG-AGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTG</genome_strand>
        <mrna_strand>GGAAG-CAAGTGGTGGGATTGAATCTCTTCGAGCCTATACCATGGATCTTGCCATGGACTCAGACGAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAACGGATGGCCTTTCTTTAGAGTGACACTTGACTTACTCGAAATGGTCTTCGCTAAGCGGTGACCCTGGTATTGCTGCATTGTACGATAAGCTTTTAGTGTCTGAAGATCTGTGGCCGCTTGGAGAGCGATTAAGATCCAAATATGAAGAAACAAAGGGCTTTCTCCTTCAG........................................................................................GTTGCCGGGCACAAGGATCTTTTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGACTCTTACATTACGACCCTCAATGTAAGCCAAGCATACACATTGAAACGAATTCGCGAGCCCTAACTACAATGTGAAGGTCAGACCTCATCTAGACAAGGCAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACTCTTATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E735397" ref_strand="+" ref_description="SGN-E735397 [LC01BF12]">
      <seq>attgaatctcttcgagctattccatggatctttgcatggactcagacaaggtttcatctcccagtctggcttggctttggggctgcattcaagcacgttattgagaaggatataagaaatctgcaaatgctcaaggatatgtacaatggatggcctttctttagagtgacacttgacttgctcgaaatggtcttcgctaagggagaccctggtattgctgcattgtatgataaacttttagtatccgaagatctgtggccgcttggagagcgattgagatccaaatacgaagaaacaaagggctttctccttcaggttgctgggcacaaggatctattggaaggagatccatacttgaggcaaaggctcaaacttcgtgattcttacatcacgacccttaacgtaagccaagcatacacattgaaacgaattcgtgaccccaactacaatgtgaaggtcagacctcacctagacaaggagatcatggaatcaagcaaaccagctgctgaattagtgaagctgaatcctacgagcgagtatgcgcctggcttggaagacaccctcatcttgaccatgaaaggtattgctgctggaatgcagaacactggttaaggctaaggctattatgtatgtataataataagtgatattgtctttcaacttttataaatcctatgtctgttcaagaataataatgatgagatgtttctgaaggatttgagtgtgtgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="+" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="589" stop="2005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="889" g_stop="1203" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1204" i_stop="1291" i_length="88">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1292" g_stop="1709" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="733" r_length="418" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="+" ref_id="SGN-E735397" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="889" e_stop="1203"/>
          <exon e_start="1292" e_stop="1709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAGGTACAGAAATTAATACTATTATTTTACCTCATCACCACAAAGCTCACATCCTATGGAAAATCTCTTTTAATTGCGCTGCTTGTCATAGGTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGGATTTGAGTGTGTGATTTT</genome_strand>
        <mrna_strand>ATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAG........................................................................................GTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGGATTTGAGTGTGTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E736075" ref_strand="+" ref_description="SGN-E736075 [LC04BA03]">
      <seq>attgaatctcttcgagctattccatggatctttgcatggactcagacaaggtttcatctcccagtctggcttggctttggggctgcattcaagcacgttattgagaaggatataagaaatctgcaaatgctcaaggatatgtacaatggatggcctttctttagagtgacacttgacttgctcgaaatggtcttcgctaagggagaccctggtattgctgcattgtatgataaacttttagtatccgaagatctgtggccgcttggagagcgattgagatccaaatacgaagaaacaaagggctttctccttcaggttgctgggcacaaggatctattggaaggagatccatacttgaggcaaaggctcaaacttcgtgattcttacatcacgacccttaacgtaagccaagcatacacattgaaacgaattcgtgaccccaactacaatgtgaaggtcagacctcacctagacaaggagatcatggaatcaagcaaaccagctgctgaattagtgaagctgaatcctacgagcgagtatgcgcctggcttggaagacaccctcatcttgaccatgaaaggtattgctgctggaatgcagaacactggttaaggctaaggctattatgtatgtataataataagtgatattgtctttcaacttttataaatcctatgtctgttcaagaataataatgatgagatgtttctgaaggatttgagtgtgtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="+" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="589" stop="2005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="889" g_stop="1203" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1204" i_stop="1291" i_length="88">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1292" g_stop="1707" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="731" r_length="416" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="+" ref_id="SGN-E736075" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="889" e_stop="1203"/>
          <exon e_start="1292" e_stop="1707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAGGTACAGAAATTAATACTATTATTTTACCTCATCACCACAAAGCTCACATCCTATGGAAAATCTCTTTTAATTGCGCTGCTTGTCATAGGTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGGATTTGAGTGTGTGATT</genome_strand>
        <mrna_strand>ATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAG........................................................................................GTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGGATTTGAGTGTGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E736716" ref_strand="+" ref_description="SGN-E736716 [LC06DF08]">
      <seq>attgaatctcttcgagctattccatggatctttgcatggactcagacaaggtttcatctcccagtctggcttggctttggggctgcattcaagcacgttattgagaaggatataagaaatctgcaaatgctcaaggatatgtacaatggatggcctttctttagagtgacacttgacttgctcgaaatggtcttcgctaagggagaccctggtattgctgcattgtatgataaacttttagtatccgaagatctgtggccgcttggagagcgattgagatccaaatacgaagaaacaaagggctttctccttcaggttgctgggcacaaggatctattggaaggagatccatacttgaggcaaaggctcaaacttcgtgattcttacatcacgacccttaacgtaagccaagcatacacattgaaacgaattcgtgaccccaactacaatgtgaaggtcagacctcacctagacaaggagatcatggaatcaagcaaaccagctgctgaattagtgaagctgaatcctacgagcgagtatgcgcctggcttggaagacaccctcatcttgaccatgaaaggtattgctgctggaatgcagaacactggttaaggctaaggctattatgtatgtataataataagtgatattgtctttcaacttttataaatcctatgtctgttcaagaataataatgatgagatgtttctgaaggatttgagtgtgtgaaaaaaaaaaanaaaaaaaaaaaaaacccttggggggggggccgggaccccatttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="+" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="589" stop="2005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="889" g_stop="1203" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1204" i_stop="1291" i_length="88">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1292" g_stop="1704" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="728" r_length="413" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="737" polyA_stop="754"/>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="+" ref_id="SGN-E736716" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="889" e_stop="1203"/>
          <exon e_start="1292" e_stop="1704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAGGTACAGAAATTAATACTATTATTTTACCTCATCACCACAAAGCTCACATCCTATGGAAAATCTCTTTTAATTGCGCTGCTTGTCATAGGTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGGATTTGAGTGTGTG</genome_strand>
        <mrna_strand>ATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAG........................................................................................GTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGGATTTGAGTGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E740064" ref_strand="+" ref_description="SGN-E740064 [LC19DG08]">
      <seq>atctttgcatggactcagacaaggtttcatctcccagtctggcttggctttggggctgcattcaagcacgttattgagaaggatataagaaatctgcaaatgctcaaggatatgtacaatggatggcctttctttagagtgacacttgacttgctcgaaatggtcttcgctaagggagaccctggtattgctgcattgtatgataaacttttagtatccgaagatctgtggccgcttggagagcgattgagatccaaatacgaagaaacaaagggctttctccttcaggttgctgggcacaaggatctattggaaggagatccatacttgaggcaaaggctcaaacttcgtgattcttacatcacgacccttaacgtaagccaagcatacacattgaaacgaattcgtgaccccaactacaatgtgaggtctgaccttcacattgtagttggggtcacgaatcaagcaaaccagctgctgaattagtgaagctgaatcctacgagcgagtatgcgcctggcttggaagacaccctcatcttgaccatgaaaggtattgctgctggaatgcagaacactggttaaggctaaggctattatgtatgtataataataagtgatattgtctttcaacttttataaatcctatgtctgttcaagaataataatgatgagatgtttctgaaggatttgagtgtgtgatttttgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="+" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="616" stop="43039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="916" g_stop="1203" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1204" i_stop="1291" i_length="88">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1292" g_stop="1712" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="708" r_length="420" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1713" i_stop="2297" i_length="585">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.736" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2298" g_stop="2312" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="723" r_length="15" r_score="0.533"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="+" ref_id="SGN-E740064" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="916" e_stop="1203"/>
          <exon e_start="1292" e_stop="1712"/>
          <exon e_start="2298" e_stop="2312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAGGTACAGAAATTAATACTATTATTTTACCTCATCACCACAAAGCTCACATCCTATGGAAAATCTCTTTTAATTGCGCTGCTTGTCATAGGTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACC-TCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGGATTTGAGTGTGTGATTTTTGATTCATACGTTCTTGAATATTATACATGGAGTAATTTAAAAAACTCAAGAATCATCGGTCTCTAACTTGAAATTGCAACGAGTTGATATGTGATCTGATGTTGAATTCCAACGACTGAATGAAATTTTTAGCCAAGCATCCGTTGGTAAAACATTATGTTAATGATACATTTTATGTTAGATATCTTGCATTATAATTTTTGTATACTAGTCATAAAAATTGATTTTGGTTTCAAAATATACAAGAGGGTCATTTGGTCTGATTCCAAAGACTAGTTATGTAGGGGTTAATTATTTTCGTACTATTTTTTGTTGTTGTTGATAGTGTGATTTGTAATATTAAAGATCACATGAATTATATAGTTTTGAAAGACCTCATGAGTATTTTTATCCGGAAACAATTAGTCTCGATACCATTATTTCACCCTCTAGCATGAGTAATTTATCTCAATACTAATAATTAATCCTAATTAACAACCAAAGGAGAGATATGATCATCTTTTATCTTTTGTTTAGCAAAAATAACAAATGTTTAATTATGTATCGATGTACATATATAATTAATCGAACTTGCTCTTGTATAATAGAAAGTGGCACAAAAT</genome_strand>
        <mrna_strand>ATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAG........................................................................................GTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTG-AGGTCTGACCTTCACATTGTAGTTGGGGTCA-CGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGGATTTGAGTGTGTGATTTTTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E416617" ref_strand="+" ref_description="SGN-E416617 [STM-23-G2]">
      <seq>ttttttttttttttttcttcaaaacatttcatcattactattcttcaacagaaacaggattcatataagttaaaagacaatatcacttattatacatacataatagcctttgccttaaccagtgttctgcattccagcagcaatacctttcatggtcaagatgagggtgtcttccaagccaggcgcatactcgctcgtaggattcagcttcactaattcagcagctggtttgcttgattccatgatctccttgtctagatgcggcctgaccttcacattgtagttggggtcgcgaattcgtttcaatgggtatgcttggcttacattgagggtcgtaatgtaagagtcacgaagtttgagcctttgcctcaagtatttggatctcaataacgggcttgaatgcagccccaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="12402" stop="663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2467" g_stop="2459" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="0.556"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2458" i_stop="1698" i_length="761">
            <donor d_prob="0.926" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1697" g_stop="1325" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="378" r_length="369" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1324" i_stop="998" i_length="327">
            <donor d_prob="0.900" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="997" g_stop="963" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="413" r_length="35" r_score="0.886"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E416617" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E416617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2467" e_stop="2459"/>
          <exon e_start="1697" e_stop="1325"/>
          <exon e_start="997" e_stop="963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTCATGTAAATTCTTATATATACTAGATCGTGCTCTCAGTTTCGTTGATAATCTCAAGTTTCTTATCCCGTTGAAGGTTTATGAATCGTTTTCCATAAAAAAAAAAAAGAGTGTAAATTCTTCTAGTTAATTACGATTATCAGGAGTTTCCATTTTGTGCCACTTTCTATTATACAAGAGCAAGTTCGATTAATTATATATGTACATCGATACATAATTAAACATTTGTTATTTTTGCTAAACAAAAGATAAAAGATGATCATATCTCTCCTTTGGTTGTTAATTAGGATTAATTATTAGTATTGAGATAAATTACTCATGCTAGAGGGTGAAATAATGGTATCGAGACTAATTGTTTCCGGATAAAAATACTCATGAGGTCTTTCAAAACTATATAATTCATGTGATCTTTAATATTACAAATCACACTATCAACAACAACAAAAAATAGTACGAAAATAATTAACCCCTACATAACTAGTCTTTGGAATCAGACCAAATGACCCTCTTGTATATTTTGAAACCAAAATCAATTTTTATGACTAGTATACAAAAATTATAATGCAAGATATCTAACATAAAATGTATCATTAACATAATGTTTTACCAACGGATGCTTGGCTAAAAATTTCATTCAGTCGTTGGAATTCAACATCAGATCACATATCAACTCGTTGCAATTTCAAGTTAGAGACCGATGATTCTTGAGTTTTTTAAATTACTCCATGTATAATATTCAAGAACGTATGAATCAAAAATCACACACTCAAATCCTTCAGAAACATCTCATCATTATTATTCTTGAACAGACATAGGATTTATAAAAGTTGAAAGACAATATCACTTATTATTATACATACATAATAGCCTTAGCCTTAACCAGTGTTCTGCATTCCAGCAGCAATACCTTTCATGGTCAAGATGAGGGTGTCTTCCAAGCCAGGCGCATACTCGCTCGTAGGATTCAGCTTCACTAATTCAGCAGCTGGTTTGCTTGATTCCATGATCTCCTTGTCTAGGTGAGGTCTGACCTTCACATTGTAGTTGGGGTCACGAATTCGTTTCAATGTGTATGCTTGGCTTACGTTAAGGGTCGTGATGTAAGAATCACGAAGTTTGAGCCTTTGCCTCAAGTATGGATCTCCTTCCAATAGATCCTTGTGCCCAGCAACCTATGACAAGCAGCGCAATTAAAAGAGATTTTCCATAGGATGTGAGCTTTGTGGTGATGAGGTAAAATAATAGTATTAATTTCTGTACCTGAAGGAGAAAGCCCTTTGTTTCTTCGTATTTGGATCTCAATCGCTCTCCAAGCGGCCACAGATCTTCGGATACTAAAAGTTTATCATACAATGCAGCAATACCAGGGTCTCCCTTAGCGAAGACCATTTCGAGCAAGTCAAGTGTCACTCTAAAGAAAGGCCATCCATTGTACATATCCTTGAGCATTTGCAGATTTCTTATATCCTTCTCAATAACGTGCTTGAATGCAGCCCCAAAG</genome_strand>
        <mrna_strand>TTTTTTTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTCTTCA-AAACATTTCATCATTACTATTCTTCAACAGAAACAGGATTCATATAAGTTAAAAGACAATATCAC---TTATTATACATACATAATAGCCTTTGCCTTAACCAGTGTTCTGCATTCCAGCAGCAATACCTTTCATGGTCAAGATGAGGGTGTCTTCCAAGCCAGGCGCATACTCGCTCGTAGGATTCAGCTTCACTAATTCAGCAGCTGGTTTGCTTGATTCCATGATCTCCTTGTCTAGATGCGGCCTGACCTTCACATTGTAGTTGGGGTCGCGAATTCGTTTCAATGGGTATGCTTGGCTTACATTGAGGGTCGTAATGTAAGAGTCACGAAGTTTGAGCCTTTGCCTCAAGTATTT.......................................................................................................................................................................................................................................................................................................................................GGATCTCAATAACGGGCTTGAATGCAGCCCCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E736192" ref_strand="+" ref_description="SGN-E736192 [LC04CG09]">
      <seq>cgatagagagagagatataagaaatctgcaaatgctcaaggatatgtacaatggatggcctttctttagagtgacacttgacttgctcgaaatggtcttcgctaagggagaccctggtattgctgcattgtatgataaacttttagtatccgaagatctgtggccgcttggagagcgattgagatccaaatacgaagaaacaaagggctttctccttcaggttgctgggcacaaggatctattggaaggagatccatacttgaggcaaaggctcaaacttcgtgattcttacatcacgacccttaacgtaagccaagcatacacattgaaacgaattcgtgaccccaactacaatgtgaaggtcagacctcacctagacaaggagatcatggaatcaagcaaaccagctgctgaattagtgaagctgaatcctacgagcgagtatgcgcctggcttggaagacaccctcatcttgaccatgaaaggtattgctgctggaatgcagaacactggttaaggctaaggctattatgtatgtataataataagtgatattgtctttcaacttttataaatcctatgtctgttcaagaataataatgatgagatgtttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="+" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="688" stop="1987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="984" g_stop="1203" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1204" i_stop="1291" i_length="88">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1292" g_stop="1687" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="616" r_length="396" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="+" ref_id="SGN-E736192" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="984" e_stop="1203"/>
          <exon e_start="1292" e_stop="1687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAGGTACAGAAATTAATACTATTATTTTACCTCATCACCACAAAGCTCACATCCTATGGAAAATCTCTTTTAATTGCGCTGCTTGTCATAGGTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTG</genome_strand>
        <mrna_strand>CGATAGAGAGAGAGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAG........................................................................................GTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E710210" ref_strand="+" ref_description="SGN-E710210 [FA54CF09]">
      <seq>atgctcaaggatatgtacaatggatggcctttctttagagtgacacttgacttgctcgaaatggtcttcgctaagggagaccctggtattgctgcattgtatgataaacttttagtatccgaagatctgtggccgcttggagagcgattgagatccaaatacgaagaaacaaagggctttctccttcaggttgctgggcacaaggatctattggaaggagatccatacttgaggcaaaggctcaaacttcgtgattcttacatcacgacccttaacgtaagccaagcatacacattgaaacgaattcgtgaccccaactacaatgtgaaggtcagacctcacctatacaaggagatcatggaatcaagcaaacccagctgctgaattagtgaagctgaatcctaccagcgagtatgcgcctggcttggaagacaccctcatcttgaccatgaaaggtattgctgctggaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="+" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="715" stop="1874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1015" g_stop="1203" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1204" i_stop="1291" i_length="88">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1292" g_stop="1574" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="473" r_length="284" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="+" ref_id="SGN-E710210" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1015" e_stop="1203"/>
          <exon e_start="1292" e_stop="1574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAGGTACAGAAATTAATACTATTATTTTACCTCATCACCACAAAGCTCACATCCTATGGAAAATCTCTTTTAATTGCGCTGCTTGTCATAGGTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAA-CCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGC</genome_strand>
        <mrna_strand>ATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAG........................................................................................GTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTATACAAGGAGATCATGGAATCAAGCAAACCCAGCTGCTGAATTAGTGAAGCTGAATCCTACCAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E615345" ref_strand="+" ref_description="SGN-E615345 [65142]">
      <seq>cctttctttanagtgacacttgacttactcgaaatggtcttcgctaagggtgaccctggtattgctgcattgtacgataagcttttagtgtctgaagatctgtggccgcttggagagcgattaagatccaaatatgaagaaacaaagggctttctccttcaggttgccgggcacaaggatcttttggaaggagatccatacttgaggcaaaggctcaaacttcgtgactcttacattacgaccctcaatgtaagccaagcatacacattgaaacgaattcgcgaccccaactacaatgtgaaggtcagacctcatctagacaaggagatcatggaatcaagcaaaccagctgctgaattagtgaagctgaatcctacgagcgagtatgcgcctggcttggaagacactcttatcttgaccatgaaaggtattgctgctggaatgcagaacactggttaaggcaaaggcaatggctaaggctattatgtatgtataataataagtgatattgtcttttaacttttataaatcctatgtctgttcaagaataataatgatgagatgtttctgaagaattttagtgtgtgatttctgattcatacgttcttgaatatgatacatggagtgttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="+" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="742" stop="2054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1042" g_stop="1203" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1204" i_stop="1291" i_length="88">
            <donor d_prob="0.957" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1292" g_stop="1754" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="637" r_length="475" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="+" ref_id="SGN-E615345" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E615345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1042" e_stop="1203"/>
          <exon e_start="1292" e_stop="1754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAGGTACAGAAATTAATACTATTATTTTACCTCATCACCACAAAGCTCACATCCTATGGAAAATCTCTTTTAATTGCGCTGCTTGTCATAGGTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTT-----------AA-GGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGGATTTGAGTGTGTGATTTTTGATTCATACGTTCTTGAATATTATACATGGAGTAATTTAAAAAA</genome_strand>
        <mrna_strand>CCTTTCTTTANAGTGACACTTGACTTACTCGAAATGGTCTTCGCTAAGGGTGACCCTGGTATTGCTGCATTGTACGATAAGCTTTTAGTGTCTGAAGATCTGTGGCCGCTTGGAGAGCGATTAAGATCCAAATATGAAGAAACAAAGGGCTTTCTCCTTCAG........................................................................................GTTGCCGGGCACAAGGATCTTTTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGACTCTTACATTACGACCCTCAATGTAAGCCAAGCATACACATTGAAACGAATTCGCGACCCCAACTACAATGTGAAGGTCAGACCTCATCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACTCTTATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCAAAGGCAATGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTTAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGAATTTTAGTGTGTGATTTCTGATTCATACGTTCTTGAATATGATACATGGAGTGTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E288741" ref_strand="+" ref_description="SGN-E288741 [cLES-8-N12]">
      <seq>ttagagtgacacttgacttgctcgaaatggtcttcgctaagggagaccctggtattgctgcattgtatgataaacttttagtatccgaagatctgtggccgcttggagagcgattgagatccaaatacgaagaaacaaagggctttctccttcatgttgctgggcacaaggatctattggaaggagatccatacttgaggcaaaggctcaaacttcgtgattcttacatcacgacccttaacgtaagccaagcatacacattgaaacgaattcgtgaccccaactacaatgtgaaggtcagacctcacctagacaaggagatcatggaatcaagcaaaccagctgctgaattagtgaagctgaatcctacgagcgagtatgcgcctggcttggaagacaccctcatcttgaccatgaaaggtattgctgctggaatgcagaacactggttaaggctaaggctattatgtatgtataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="+" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="749" stop="1914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1049" g_stop="1203" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1204" i_stop="1291" i_length="88">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1292" g_stop="1614" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="478" r_length="323" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="+" ref_id="SGN-E288741" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1049" e_stop="1203"/>
          <exon e_start="1292" e_stop="1614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAGGTACAGAAATTAATACTATTATTTTACCTCATCACCACAAAGCTCACATCCTATGGAAAATCTCTTTTAATTGCGCTGCTTGTCATAGGTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAAT</genome_strand>
        <mrna_strand>TTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAT........................................................................................GTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E288650" ref_strand="+" ref_description="SGN-E288650 [cLES-8-N11]">
      <seq>ttagagtgacacttgacttgctcgaaatggtcttcgctaagggagaccctggtattgctgcattgtatgataaacttttagtatccgaagatctgtggccgcttggagagcgattgagatccaaatacgaagaaacaaagggctatctccttcaggttgctgggcacatggatctattggaaggagatccatacttgaggcaaaggctcaaacttcgtgattcttacatcacgacccttaacgttagccaagcatacacattgaaacgaattcgtgaccccaactacaatgtgaaggtcagacctcacctagacaaggagatcatggtatcaagcaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="+" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="749" stop="1775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1049" g_stop="1203" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1204" i_stop="1291" i_length="88">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1292" g_stop="1475" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="339" r_length="184" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="+" ref_id="SGN-E288650" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1049" e_stop="1203"/>
          <exon e_start="1292" e_stop="1475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAGGTACAGAAATTAATACTATTATTTTACCTCATCACCACAAAGCTCACATCCTATGGAAAATCTCTTTTAATTGCGCTGCTTGTCATAGGTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAAC</genome_strand>
        <mrna_strand>TTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTATCTCCTTCAG........................................................................................GTTGCTGGGCACATGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTTAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGTATCAAGCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E221623" ref_strand="-" ref_description="SGN-E221623 [cLEL-10-I19]">
      <seq>gagatccaaatacgaagaaacaaagggctttctccttcaggttgctgggcacaaggatctattggaaggagatccatacttgaggcaaaggctcaaacttcgtgattcttacatcacgacccttaacgtaagccaagcatacacattgaaacgaattcgtgaccccaactacaatgtgaaggtcagacctcacctagacaaggagatcatggaatcaagcaaaccagctgctgaattagtgaagctgaatcctacgagcgagtatgcgcctggcttggaagacaccctcatcttgaccatgaaaggtattgctgctggaatgcagaacactggttaaggctaaggctattatgtatgtataataataagtgatattgtctttcaacttttataaatcctatgtctgttcaagaataataatgatgagatgtttctgaaggatttgagtgtgtgatttttgattcaagagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="+" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="864" stop="2016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1164" g_stop="1203" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1204" i_stop="1291" i_length="88">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1292" g_stop="1715" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="464" r_length="424" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="470" polyA_stop="481"/>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="+" ref_id="SGN-E221623" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221623" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1164" e_stop="1203"/>
          <exon e_start="1292" e_stop="1715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAGGTACAGAAATTAATACTATTATTTTACCTCATCACCACAAAGCTCACATCCTATGGAAAATCTCTTTTAATTGCGCTGCTTGTCATAGGTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGGATTTGAGTGTGTGATTTTTGATTC</genome_strand>
        <mrna_strand>GAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAG........................................................................................GTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGGATTTGAGTGTGTGATTTTTGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E293843" ref_strand="+" ref_description="SGN-E293843 [cLET-37-G12]">
      <seq>tcaggttgctgggcacaaggatctattggaaggagatccatacttgaggcaaaggctcaaacttcgtgattcttacatcacgacccttaacgtaagccaagcatacacattgaaacgaattcgtgaccccaactacaatgtgaaggtcagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="+" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="990" stop="1739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1200" g_stop="1203" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1204" i_stop="1291" i_length="88">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1292" g_stop="1439" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="152" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="+" ref_id="SGN-E293843" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>152</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1200" e_stop="1203"/>
          <exon e_start="1292" e_stop="1439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGTACAGAAATTAATACTATTATTTTACCTCATCACCACAAAGCTCACATCCTATGGAAAATCTCTTTTAATTGCGCTGCTTGTCATAGGTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGAC</genome_strand>
        <mrna_strand>TCAG........................................................................................GTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E291611" ref_strand="+" ref_description="SGN-E291611 [cLET-6-B18]">
      <seq>ttgaggcaaaggctcaaacttcttgattcttacatcacgacccttaacgtaagccaagcatacacattgaaacgaattcgtgaccccaactacaatgtgaaggtcagacctcacctagacaaggagatcatggaatcaagcaaaccagctgctgaattagtgaagctgaatcctacgagcgagtatgcgcctggcttggaagacaccctcatcttgaccatgaaaggtattgctgctggaatgcagaacactggttaaggctaaggctattatgtatgtataataataagtgatattgtctttcaacttttataaatcctatgtctgttcaagaataataatgatgagatgtttctgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="+" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="1031" stop="1989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1331" g_stop="1697" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="+" ref_id="SGN-E291611" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1331" e_stop="1697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGGATTTGA</genome_strand>
        <mrna_strand>TTGAGGCAAAGGCTCAAACTTCTTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E234407" ref_strand="-" ref_description="SGN-E234407 [cLEL-8-N19]">
      <seq>cttaacgtaagccaagcatacacattgaaacgaattcgtgaccccaactacaatgtgaaggtcagacctcacctagacaaggagatcatggaatcaagcaaaccagctgctgaattagtgaagctgaatcctacgagcgagtatgcgcctggcttggaagacaccctcatcttgaccatgaaaggtattgctgctggaatgcagaacactggttaaggctaaggctattatgtatgtataataataagtgatattgtctttcaacttttataaatcctatgtctgttcaagaataataatgatgagatgtttctgaaggaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="+" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="1073" stop="1992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1373" g_stop="1691" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="320" polyA_stop="337"/>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="+" ref_id="SGN-E234407" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234407" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1373" e_stop="1691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGG</genome_strand>
        <mrna_strand>CTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E372627" ref_strand="-" ref_description="SGN-E372627 [TUS-31-A1]">
      <seq>gtaagttacactgctgggttgattggttctttgatgtacatgcgtatgcttggaaacagtgtggattctatgcagtcagatggacccagagcacttattaagggagctgttgggcagccaaggctattggttcctgttactttggtcatgatttttaatcggtggaatgggatcctagtcccagagtatggattcatgcacctcgagttgatacccatgctagtcggatttttcacttacaagattgcaacttttgtccaagcaatcgaggaaggtgtatcgatcattggaaataagtcacaagcttagctctagtttttatgattttccatcaacctctaatgaaaatagtagaggagaaaaaagttcaggaagacgttggattcgaaaaatgagctacaacatctatactcaatttatcactggatggattgaacaaatcgatgatttcctcatgtaaattcttatatatactagatcgtgctctcagtttcgttgataatctcaagtttcttatcccgttgaaggtttatgaatcgttttccataaaaaaaaaaaagagtgtaaattcttctagttaattacgattatcaggagtttccattttgtgccactttctattatacaagagcaagttcgattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="5747" stop="1964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5445" g_stop="5350" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="101" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5349" i_stop="4869" i_length="481">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4868" g_stop="4800" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="170" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4799" i_stop="4412" i_length="388">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4411" g_stop="4228" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="354" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4227" i_stop="3897" i_length="331">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3896" g_stop="3837" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="414" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3836" i_stop="2501" i_length="1336">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2500" g_stop="2281" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="634" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="643" polyA_stop="657"/>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E372627" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372627" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="5445" e_stop="5350"/>
          <exon e_start="4868" e_stop="4800"/>
          <exon e_start="4411" e_stop="4228"/>
          <exon e_start="3896" e_stop="3837"/>
          <exon e_start="2500" e_stop="2281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAAGTACATTTTTTGATTGTTTATCTTTACCAAATGGCTCCTTCTATGCCATTCTTGCATTATCTCAAACCTAAACATCATTTGTTTCTTTGTGTTGCATGTGCGTGTCTTAATGGAGGCGATTGATGCCAATTGACAATAGGAAGCCCAATTTTCTTATGCGTTTTGCATGAGCTACACTGCTACTATTTTACAGCATTTTGTAAAATTGTTAATGGAGCATCCTATTACCACTTCATCACATTTAAATCGATATTGTCATTTTTGAATTGTAATTGTACGTGGTCACTCAAATAGTAGTTCTTAGCGAATTGTCAGTTTCATCGTTCCAGGATTGGAAGTCATTAACTCACAGTCATAGTAGAAGCCAAACACTTGCATGATTAAATGATGCTGTTGTTTGAGACTAAGAAGAGTAGCTATATCCCTAAAACGGACTGTTTTGAGCTCTGCTTGATAAGCTTAACCGAACTTTTAATTTCAGGGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGGGTAAGCTCTACCACTATTACGATATTGACCAAAAAGATATGTGTCGAGATTAACTGTTAAATAAAACTTCTCTTCTTGATTCAAGCAAATTTCTTAGAACCTCTTGTTTATTTTCTGAAAACTACTATTGGTAGCATAAATCTATCTGCAATCTGAACTCAAGGAAGTTGGGGCTATTTTATGGGGCTTCAACTTCCTCTCTTGATCCATTTTCTCGCCATTTTCCTGCTTGTACACGCCAAAAAATCCAGCCTAGTTTAACTTTTTTCCGCATTCCCCCCTTTTTACTTCTACTACACTTGCATCCAAAGAATACTTTAATGACTTCTCTTTCATTGTTATGAAGAGTTGCCTAAGCATTTGATCTTACAATTTGATTTATTTCCAGGATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAGGTATGCTTCAACTGAACCTCCCATCTACAACTTTTATCATATTTTCAAATTACCATGAATCTTAGATTTGAATAAATGTGTTCAAATTTTCGTGTTCCATCTTAGTATAGAACTTGTTTAGAACCATGCCGTGGAATAACCAGTAAAGTTGTTGTCTAGGGGGTCACGGGTTCAAGCCCTGGAAACCAGCAGGGTAAGGTTGAGTACAGTGGACCCTTGTGTCCAGCTCTTCTCCGGATATACATGGAGCTTACTGCATCAGACTGTTCTTTTTGTCACGTCAAATACTAGTATGTATGTCCTGTCTCACACTCGATATTTCTTGTTGCAGAGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCAATTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGTGTTTCGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGGAGAACAGGTTGTTCCTGCCTCTGAACTTGCTGCCGCCATGAAGCAGATTAAAGAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTATTGCCCGGGGATGGGGAGTAAGCTTAGTCAGCCGTTGTCTCCGGGTGTCGCGTGCGCAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTGAGCGAAAACCTGCTGTACCGCCATCGAAACGGGCACATACAGGCAGAGTGGCCGTGAAAGAAAGCAATCAGCGATGGTGCTCTGACGGGTTCGAGTTCTGCTGTGATAACGGAGAGAGACTGCGTGTCACGTTCGCGCTGGACTGCTGTGATCGTGAGGCACTGCACTGGGCGGTCACTACCGGCGGCTTCAACAGTGAAACAGTACAGGACGACATGCTGGGAGCGGTGGAACGCCGCTTCGGCAACGATCTTCCGTCGTCTCCAGTGGAGTGGCAGACGGATAATGGTTCATGCTACCGGGCTAATGAAACACGCCAGTTCGCCCGGATGTTGGGACTTGAACCGAAGAACACGGCGGTGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCATGTAAATTCTTATATATACTAGATCGTGCTCTCAGTTTCGTTGATAATCTCAAGTTTCTTATCCCGTTGAAGGTTTATGAATCGTTTTCCATAAAAAAAAAAAAGAGTGTAAATTCTTCTAGTTAATTACGATTATCAGGAGTTTCCATTTTGTGCCACTTTCTATTATACAAGAGCAA</genome_strand>
        <mrna_strand>TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGG....................................................................................................................................................................................................................................................................................................................................................................................................GATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAG...........................................................................................................................................................................................................................................................................................................................................AGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCATGTAAATTCTTATATATACTAGATCGTGCTCTCAGTTTCGTTGATAATCTCAAGTTTCTTATCCCGTTGAAGGTTTATGAATCGTTTTCCATAAAAAAAAAAAAGAGTGTAAATTCTTCTAGTTAATTACGATTATCAGGAGTTTCCATTTTGTGCCACTTTCTATTATACAAGAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E746606" ref_strand="+" ref_description="SGN-E746606 [GI|47104144]">
      <seq>tatttattttcccttgtctataagatcaaaaaacacaaccccatcactccaaattgaacaaaaatgggagttctaagctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagttgggattggtggtgttggtgtgatttcagcttatatctcttattctcctgaaataacagtaagttacactgctgggttgattggttctttgatgtacatgcgtatgcttggaaacagtgtggattctatgcagtcagatggacccagagcacttattaagggagctgttgggcagccaaggctattggttcctgttactttggtcatgatttttaatcggtggaatgggatcctagtcccagagtatggattcatgcacctcgagttgatacccatgctagtcggatttttcacttacaagattgcaacttttgtccaagcaatcgaggaaggtgtatcgatcattggaaataagtcacaagcttagctctagtttttatgattttccatcaacctctaatgaaaatagtagaggagaaaaaagttcaggaagacgttggattcgaaaaatgagctacaacatctatactcaatttatcactggatggattgaacaaatcgatgatttcctcatgtaaattcttatatatactagatcgtgctctcagtttcgttgataatctcaagtttcttatcccgttgaaggtttatgaatcgttttccataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8500" stop="2051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8200" g_stop="7820" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6668" g_stop="6619" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="431" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6538" g_stop="6463" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="507" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6462" i_stop="6374" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6373" g_stop="6278" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="603" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6277" i_stop="6140" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6139" g_stop="6059" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="684" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6058" i_stop="5961" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5960" g_stop="5869" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="776" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5868" i_stop="5446" i_length="423">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5445" g_stop="5350" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="872" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="5349" i_stop="4869" i_length="481">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4868" g_stop="4800" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="873" r_stop="941" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="4799" i_stop="4412" i_length="388">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4411" g_stop="4228" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="942" r_stop="1125" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="4227" i_stop="3897" i_length="331">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="3896" g_stop="3837" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1126" r_stop="1185" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="3836" i_stop="2501" i_length="1336">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="2500" g_stop="2353" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1186" r_stop="1333" r_length="148" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E746606" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8200" e_stop="7820"/>
          <exon e_start="6668" e_stop="6619"/>
          <exon e_start="6538" e_stop="6463"/>
          <exon e_start="6373" e_stop="6278"/>
          <exon e_start="6139" e_stop="6059"/>
          <exon e_start="5960" e_stop="5869"/>
          <exon e_start="5445" e_stop="5350"/>
          <exon e_start="4868" e_stop="4800"/>
          <exon e_start="4411" e_stop="4228"/>
          <exon e_start="3896" e_stop="3837"/>
          <exon e_start="2500" e_stop="2353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTATTTTCCCTTGTCTATAAGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAGGTAATCCAAAACTTCCTATATGGCTATATGCTTTAATTCCTTTACACGTCAACGTTAGAATTACTCGTGTTTGATTTACTATTGTTGTAGTGGGACATGACCCCTATTTATTACAAACCGTTCCTCCAATTAGTATATTGGTCCCTTAAGTTGTCAGTTTGAAAAATTTCTTGACGAAGAGAATCTTAATTTGCTTATTTCTTCTGATTTGTGTAACTGATGCAATGTATGGAAATTTCCTCGACTGAAATATCTTTAGCTGCTAGAATTCTTGTAATGTCCTCTGTCAGGCCTGGACGTTTTTAGCTTCTCTTTGCTTAGATTTAATTAATGTAAGGAATCTTTAGTTTTTTCAAATCTGGCAATAGCACTCATGCAGAAATTGTGGTGTTAATGAACTGTTGTATTTTTTCATTCTTGCAGTTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAAGTACATTTTTTGATTGTTTATCTTTACCAAATGGCTCCTTCTATGCCATTCTTGCATTATCTCAAACCTAAACATCATTTGTTTCTTTGTGTTGCATGTGCGTGTCTTAATGGAGGCGATTGATGCCAATTGACAATAGGAAGCCCAATTTTCTTATGCGTTTTGCATGAGCTACACTGCTACTATTTTACAGCATTTTGTAAAATTGTTAATGGAGCATCCTATTACCACTTCATCACATTTAAATCGATATTGTCATTTTTGAATTGTAATTGTACGTGGTCACTCAAATAGTAGTTCTTAGCGAATTGTCAGTTTCATCGTTCCAGGATTGGAAGTCATTAACTCACAGTCATAGTAGAAGCCAAACACTTGCATGATTAAATGATGCTGTTGTTTGAGACTAAGAAGAGTAGCTATATCCCTAAAACGGACTGTTTTGAGCTCTGCTTGATAAGCTTAACCGAACTTTTAATTTCAGGGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGGGTAAGCTCTACCACTATTACGATATTGACCAAAAAGATATGTGTCGAGATTAACTGTTAAATAAAACTTCTCTTCTTGATTCAAGCAAATTTCTTAGAACCTCTTGTTTATTTTCTGAAAACTACTATTGGTAGCATAAATCTATCTGCAATCTGAACTCAAGGAAGTTGGGGCTATTTTATGGGGCTTCAACTTCCTCTCTTGATCCATTTTCTCGCCATTTTCCTGCTTGTACACGCCAAAAAATCCAGCCTAGTTTAACTTTTTTCCGCATTCCCCCCTTTTTACTTCTACTACACTTGCATCCAAAGAATACTTTAATGACTTCTCTTTCATTGTTATGAAGAGTTGCCTAAGCATTTGATCTTACAATTTGATTTATTTCCAGGATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAGGTATGCTTCAACTGAACCTCCCATCTACAACTTTTATCATATTTTCAAATTACCATGAATCTTAGATTTGAATAAATGTGTTCAAATTTTCGTGTTCCATCTTAGTATAGAACTTGTTTAGAACCATGCCGTGGAATAACCAGTAAAGTTGTTGTCTAGGGGGTCACGGGTTCAAGCCCTGGAAACCAGCAGGGTAAGGTTGAGTACAGTGGACCCTTGTGTCCAGCTCTTCTCCGGATATACATGGAGCTTACTGCATCAGACTGTTCTTTTTGTCACGTCAAATACTAGTATGTATGTCCTGTCTCACACTCGATATTTCTTGTTGCAGAGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCAATTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGTGTTTCGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGGAGAACAGGTTGTTCCTGCCTCTGAACTTGCTGCCGCCATGAAGCAGATTAAAGAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTATTGCCCGGGGATGGGGAGTAAGCTTAGTCAGCCGTTGTCTCCGGGTGTCGCGTGCGCAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTGAGCGAAAACCTGCTGTACCGCCATCGAAACGGGCACATACAGGCAGAGTGGCCGTGAAAGAAAGCAATCAGCGATGGTGCTCTGACGGGTTCGAGTTCTGCTGTGATAACGGAGAGAGACTGCGTGTCACGTTCGCGCTGGACTGCTGTGATCGTGAGGCACTGCACTGGGCGGTCACTACCGGCGGCTTCAACAGTGAAACAGTACAGGACGACATGCTGGGAGCGGTGGAACGCCGCTTCGGCAACGATCTTCCGTCGTCTCCAGTGGAGTGGCAGACGGATAATGGTTCATGCTACCGGGCTAATGAAACACGCCAGTTCGCCCGGATGTTGGGACTTGAACCGAAGAACACGGCGGTGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCATGTAAATTCTTATATATACTAGATCGTGCTCTCAGTTTCGTTGATAATCTCAAGTTTCTTATCCCGTTGAAGGTTTATGAATCGTTTTCCATAAAAAAAAAAAAGAG</genome_strand>
        <mrna_strand>TATTTATTTTCCCTTGTCTATAAGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGG....................................................................................................................................................................................................................................................................................................................................................................................................GATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAG...........................................................................................................................................................................................................................................................................................................................................AGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCATGTAAATTCTTATATATACTAGATCGTGCTCTCAGTTTCGTTGATAATCTCAAGTTTCTTATCCCGTTGAAGGTTTATGAATCGTTTTCCATAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E370517" ref_strand="-" ref_description="SGN-E370517 [TUS-29-K23]">
      <seq>gagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagttgggattggtggtgttggtgtgatttcagcttatatctcttattctcctgaaataacagtaagttacactgctgggttgattggttctttgatgtacatgcgtatgcttggaaacagtgtggattctatgcagtcagatggacccagagcacttattaagggagctgttgggcagccaaggctattggttcctgttgctttggtcatgatttttaatcggtggaatgggatcctagtcccagagtatggattcatgcacctcgagttgatacccatgctagtcggatttttcacttacaagattgcaacttttgtccaagcaatcgaggaaggtgtatcgatcattggaaataagtcacaagcttagctctagtttttatgattttccatcaacctctaatgaaaatagtagaggagaaaaaagttcaggaagacgttggattcgaaaaatgagctacaacatctatactcaatttatcactggatggattgaacaaatcgatgatttcctcatgtaaattcttatatatactagatcgtgctctcagtttcgttgataatctcaagtttcttatcccgttgaaggtttatgaatcgttttccataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="6428" stop="2057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6128" g_stop="6059" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6058" i_stop="5961" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5960" g_stop="5869" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="162" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5868" i_stop="5446" i_length="423">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5445" g_stop="5350" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="258" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5349" i_stop="4869" i_length="481">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4868" g_stop="4800" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="327" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4799" i_stop="4412" i_length="388">
            <donor d_prob="0.913" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4411" g_stop="4228" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="511" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4227" i_stop="3897" i_length="331">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3896" g_stop="3833" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="575" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3832" i_stop="2497" i_length="1336">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2496" g_stop="2357" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="715" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E370517" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370517" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="6128" e_stop="6059"/>
          <exon e_start="5960" e_stop="5869"/>
          <exon e_start="5445" e_stop="5350"/>
          <exon e_start="4868" e_stop="4800"/>
          <exon e_start="4411" e_stop="4228"/>
          <exon e_start="3896" e_stop="3833"/>
          <exon e_start="2496" e_stop="2357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAGGTAATCCAAAACTTCCTATATGGCTATATGCTTTAATTCCTTTACACGTCAACGTTAGAATTACTCGTGTTTGATTTACTATTGTTGTAGTGGGACATGACCCCTATTTATTACAAACCGTTCCTCCAATTAGTATATTGGTCCCTTAAGTTGTCAGTTTGAAAAATTTCTTGACGAAGAGAATCTTAATTTGCTTATTTCTTCTGATTTGTGTAACTGATGCAATGTATGGAAATTTCCTCGACTGAAATATCTTTAGCTGCTAGAATTCTTGTAATGTCCTCTGTCAGGCCTGGACGTTTTTAGCTTCTCTTTGCTTAGATTTAATTAATGTAAGGAATCTTTAGTTTTTTCAAATCTGGCAATAGCACTCATGCAGAAATTGTGGTGTTAATGAACTGTTGTATTTTTTCATTCTTGCAGTTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAAGTACATTTTTTGATTGTTTATCTTTACCAAATGGCTCCTTCTATGCCATTCTTGCATTATCTCAAACCTAAACATCATTTGTTTCTTTGTGTTGCATGTGCGTGTCTTAATGGAGGCGATTGATGCCAATTGACAATAGGAAGCCCAATTTTCTTATGCGTTTTGCATGAGCTACACTGCTACTATTTTACAGCATTTTGTAAAATTGTTAATGGAGCATCCTATTACCACTTCATCACATTTAAATCGATATTGTCATTTTTGAATTGTAATTGTACGTGGTCACTCAAATAGTAGTTCTTAGCGAATTGTCAGTTTCATCGTTCCAGGATTGGAAGTCATTAACTCACAGTCATAGTAGAAGCCAAACACTTGCATGATTAAATGATGCTGTTGTTTGAGACTAAGAAGAGTAGCTATATCCCTAAAACGGACTGTTTTGAGCTCTGCTTGATAAGCTTAACCGAACTTTTAATTTCAGGGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGGGTAAGCTCTACCACTATTACGATATTGACCAAAAAGATATGTGTCGAGATTAACTGTTAAATAAAACTTCTCTTCTTGATTCAAGCAAATTTCTTAGAACCTCTTGTTTATTTTCTGAAAACTACTATTGGTAGCATAAATCTATCTGCAATCTGAACTCAAGGAAGTTGGGGCTATTTTATGGGGCTTCAACTTCCTCTCTTGATCCATTTTCTCGCCATTTTCCTGCTTGTACACGCCAAAAAATCCAGCCTAGTTTAACTTTTTTCCGCATTCCCCCCTTTTTACTTCTACTACACTTGCATCCAAAGAATACTTTAATGACTTCTCTTTCATTGTTATGAAGAGTTGCCTAAGCATTTGATCTTACAATTTGATTTATTTCCAGGATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAGGTATGCTTCAACTGAACCTCCCATCTACAACTTTTATCATATTTTCAAATTACCATGAATCTTAGATTTGAATAAATGTGTTCAAATTTTCGTGTTCCATCTTAGTATAGAACTTGTTTAGAACCATGCCGTGGAATAACCAGTAAAGTTGTTGTCTAGGGGGTCACGGGTTCAAGCCCTGGAAACCAGCAGGGTAAGGTTGAGTACAGTGGACCCTTGTGTCCAGCTCTTCTCCGGATATACATGGAGCTTACTGCATCAGACTGTTCTTTTTGTCACGTCAAATACTAGTATGTATGTCCTGTCTCACACTCGATATTTCTTGTTGCAGAGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCAATTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGTGTTTCGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGGAGAACAGGTTGTTCCTGCCTCTGAACTTGCTGCCGCCATGAAGCAGATTAAAGAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTATTGCCCGGGGATGGGGAGTAAGCTTAGTCAGCCGTTGTCTCCGGGTGTCGCGTGCGCAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTGAGCGAAAACCTGCTGTACCGCCATCGAAACGGGCACATACAGGCAGAGTGGCCGTGAAAGAAAGCAATCAGCGATGGTGCTCTGACGGGTTCGAGTTCTGCTGTGATAACGGAGAGAGACTGCGTGTCACGTTCGCGCTGGACTGCTGTGATCGTGAGGCACTGCACTGGGCGGTCACTACCGGCGGCTTCAACAGTGAAACAGTACAGGACGACATGCTGGGAGCGGTGGAACGCCGCTTCGGCAACGATCTTCCGTCGTCTCCAGTGGAGTGGCAGACGGATAATGGTTCATGCTACCGGGCTAATGAAACACGCCAGTTCGCCCGGATGTTGGGACTTGAACCGAAGAACACGGCGGTGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCATGTAAATTCTTATATATACTAGATCGTGCTCTCAGTTTCGTTGATAATCTCAAGTTTCTTATCCCGTTGAAGGTTTATGAATCGTTTTCCATAAAAAAAAAAA</genome_strand>
        <mrna_strand>GAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTGCTTTGGTCATGATTTTTAATCGGTGGAATGG....................................................................................................................................................................................................................................................................................................................................................................................................GATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAG...........................................................................................................................................................................................................................................................................................................................................AGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCAATTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTGGATGGATTGAACAAATCGATGATTTCCTCATGTAAATTCTTATATATACTAGATCGTGCTCTCAGTTTCGTTGATAATCTCAAGTTTCTTATCCCGTTGAAGGTTTATGAATCGTTTTCCATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E282688" ref_strand="-" ref_description="SGN-E282688 [cLER-15-H19]">
      <seq>tgttgctttggtcatgatttttaatcggtggaatgggatcctagtcccagagtatggattcatgcacctcgagttgatacccatgctagtcggatttttcacttacaagattgcaacttttgtccaagcaatcgaggaaggtgtatcgatcattggaaataagtcacaagcttagctctagtttttatgattttccatcaacctctaatgaaaatagtagaggagaaaaaagttcaggaagacgttggattcgaaaaatgagctacaacatctatactcaatttatcactggatggattgaacaaatcgatgatttcctcatgtaaattcttatatatactagatcgtgctctcagtttcgttgataatctcaagtttcttatcccgttgaaggtttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="5135" stop="2079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4835" g_stop="4800" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4799" i_stop="4412" i_length="388">
            <donor d_prob="0.913" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4411" g_stop="4228" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="220" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4227" i_stop="3897" i_length="331">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3896" g_stop="3837" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="280" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3836" i_stop="2501" i_length="1336">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2500" g_stop="2388" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="393" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E282688" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282688" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="4835" e_stop="4800"/>
          <exon e_start="4411" e_stop="4228"/>
          <exon e_start="3896" e_stop="3837"/>
          <exon e_start="2500" e_stop="2388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTACTTTGGTCATGATTTTTAATCGGTGGAATGGGTAAGCTCTACCACTATTACGATATTGACCAAAAAGATATGTGTCGAGATTAACTGTTAAATAAAACTTCTCTTCTTGATTCAAGCAAATTTCTTAGAACCTCTTGTTTATTTTCTGAAAACTACTATTGGTAGCATAAATCTATCTGCAATCTGAACTCAAGGAAGTTGGGGCTATTTTATGGGGCTTCAACTTCCTCTCTTGATCCATTTTCTCGCCATTTTCCTGCTTGTACACGCCAAAAAATCCAGCCTAGTTTAACTTTTTTCCGCATTCCCCCCTTTTTACTTCTACTACACTTGCATCCAAAGAATACTTTAATGACTTCTCTTTCATTGTTATGAAGAGTTGCCTAAGCATTTGATCTTACAATTTGATTTATTTCCAGGATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAGGTATGCTTCAACTGAACCTCCCATCTACAACTTTTATCATATTTTCAAATTACCATGAATCTTAGATTTGAATAAATGTGTTCAAATTTTCGTGTTCCATCTTAGTATAGAACTTGTTTAGAACCATGCCGTGGAATAACCAGTAAAGTTGTTGTCTAGGGGGTCACGGGTTCAAGCCCTGGAAACCAGCAGGGTAAGGTTGAGTACAGTGGACCCTTGTGTCCAGCTCTTCTCCGGATATACATGGAGCTTACTGCATCAGACTGTTCTTTTTGTCACGTCAAATACTAGTATGTATGTCCTGTCTCACACTCGATATTTCTTGTTGCAGAGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCAATTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGTGTTTCGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGGAGAACAGGTTGTTCCTGCCTCTGAACTTGCTGCCGCCATGAAGCAGATTAAAGAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTATTGCCCGGGGATGGGGAGTAAGCTTAGTCAGCCGTTGTCTCCGGGTGTCGCGTGCGCAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTGAGCGAAAACCTGCTGTACCGCCATCGAAACGGGCACATACAGGCAGAGTGGCCGTGAAAGAAAGCAATCAGCGATGGTGCTCTGACGGGTTCGAGTTCTGCTGTGATAACGGAGAGAGACTGCGTGTCACGTTCGCGCTGGACTGCTGTGATCGTGAGGCACTGCACTGGGCGGTCACTACCGGCGGCTTCAACAGTGAAACAGTACAGGACGACATGCTGGGAGCGGTGGAACGCCGCTTCGGCAACGATCTTCCGTCGTCTCCAGTGGAGTGGCAGACGGATAATGGTTCATGCTACCGGGCTAATGAAACACGCCAGTTCGCCCGGATGTTGGGACTTGAACCGAAGAACACGGCGGTGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCATGTAAATTCTTATATATACTAGATCGTGCTCTCAGTTTCGTTGATAATCTCAAGTTTCTTATCCCGTTGAAG</genome_strand>
        <mrna_strand>TGTTGCTTTGGTCATGATTTTTAATCGGTGGAATGG....................................................................................................................................................................................................................................................................................................................................................................................................GATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAG...........................................................................................................................................................................................................................................................................................................................................AGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCATGTAAATTCTTATATATACTAGATCGTGCTCTCAGTTTCGTTGATAATCTCAAGTTTCTTATCCCGTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E345757" ref_strand="+" ref_description="SGN-E345757 [cTOF-18-E3]">
      <seq>tgcaactgggggcagtgacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagttgggattggtggtgttggtgtgatttcagcttatatctcttattctcctgaaataacagtaagttacactgctgggttgattggttctttgatgtacatgcgtatgcttggaaacagtgtggattctatgcagtcagatggacccagagcacttattaagggagctgttgggcagccaaggctattggttcctgttactttggtcatgatttttaatcggtggaatgggatcctagtcccagagtatggattcatgcacctcgagttgatacccatgctagtcggatttttcacttacaagattgcaacttttgtccaagcaatcgaggaaggtgtatcgatcattggaaataagtcacaagcttagctctagtttttatgattttccatcaacctctaatgaaaatagtagaggagaaaaaagttcangaagacgttggattcgaaaaatgagctacaacatctatactcaatttatcactggatggattgaacaaatcgatgatttcctcatgtaaatncttatatatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="6593" stop="2140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6293" g_stop="6278" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6277" i_stop="6140" i_length="138">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6139" g_stop="6059" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="97" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6058" i_stop="5961" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5960" g_stop="5869" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="189" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5868" i_stop="5446" i_length="423">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5445" g_stop="5350" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="285" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5349" i_stop="4869" i_length="481">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4868" g_stop="4800" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="354" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4799" i_stop="4412" i_length="388">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4411" g_stop="4228" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="538" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4227" i_stop="3897" i_length="331">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3896" g_stop="3837" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="598" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="3836" i_stop="2501" i_length="1336">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2500" g_stop="2440" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="659" r_length="61" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E345757" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6293" e_stop="6278"/>
          <exon e_start="6139" e_stop="6059"/>
          <exon e_start="5960" e_stop="5869"/>
          <exon e_start="5445" e_stop="5350"/>
          <exon e_start="4868" e_stop="4800"/>
          <exon e_start="4411" e_stop="4228"/>
          <exon e_start="3896" e_stop="3837"/>
          <exon e_start="2500" e_stop="2440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAGGTAATCCAAAACTTCCTATATGGCTATATGCTTTAATTCCTTTACACGTCAACGTTAGAATTACTCGTGTTTGATTTACTATTGTTGTAGTGGGACATGACCCCTATTTATTACAAACCGTTCCTCCAATTAGTATATTGGTCCCTTAAGTTGTCAGTTTGAAAAATTTCTTGACGAAGAGAATCTTAATTTGCTTATTTCTTCTGATTTGTGTAACTGATGCAATGTATGGAAATTTCCTCGACTGAAATATCTTTAGCTGCTAGAATTCTTGTAATGTCCTCTGTCAGGCCTGGACGTTTTTAGCTTCTCTTTGCTTAGATTTAATTAATGTAAGGAATCTTTAGTTTTTTCAAATCTGGCAATAGCACTCATGCAGAAATTGTGGTGTTAATGAACTGTTGTATTTTTTCATTCTTGCAGTTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAAGTACATTTTTTGATTGTTTATCTTTACCAAATGGCTCCTTCTATGCCATTCTTGCATTATCTCAAACCTAAACATCATTTGTTTCTTTGTGTTGCATGTGCGTGTCTTAATGGAGGCGATTGATGCCAATTGACAATAGGAAGCCCAATTTTCTTATGCGTTTTGCATGAGCTACACTGCTACTATTTTACAGCATTTTGTAAAATTGTTAATGGAGCATCCTATTACCACTTCATCACATTTAAATCGATATTGTCATTTTTGAATTGTAATTGTACGTGGTCACTCAAATAGTAGTTCTTAGCGAATTGTCAGTTTCATCGTTCCAGGATTGGAAGTCATTAACTCACAGTCATAGTAGAAGCCAAACACTTGCATGATTAAATGATGCTGTTGTTTGAGACTAAGAAGAGTAGCTATATCCCTAAAACGGACTGTTTTGAGCTCTGCTTGATAAGCTTAACCGAACTTTTAATTTCAGGGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGGGTAAGCTCTACCACTATTACGATATTGACCAAAAAGATATGTGTCGAGATTAACTGTTAAATAAAACTTCTCTTCTTGATTCAAGCAAATTTCTTAGAACCTCTTGTTTATTTTCTGAAAACTACTATTGGTAGCATAAATCTATCTGCAATCTGAACTCAAGGAAGTTGGGGCTATTTTATGGGGCTTCAACTTCCTCTCTTGATCCATTTTCTCGCCATTTTCCTGCTTGTACACGCCAAAAAATCCAGCCTAGTTTAACTTTTTTCCGCATTCCCCCCTTTTTACTTCTACTACACTTGCATCCAAAGAATACTTTAATGACTTCTCTTTCATTGTTATGAAGAGTTGCCTAAGCATTTGATCTTACAATTTGATTTATTTCCAGGATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAGGTATGCTTCAACTGAACCTCCCATCTACAACTTTTATCATATTTTCAAATTACCATGAATCTTAGATTTGAATAAATGTGTTCAAATTTTCGTGTTCCATCTTAGTATAGAACTTGTTTAGAACCATGCCGTGGAATAACCAGTAAAGTTGTTGTCTAGGGGGTCACGGGTTCAAGCCCTGGAAACCAGCAGGGTAAGGTTGAGTACAGTGGACCCTTGTGTCCAGCTCTTCTCCGGATATACATGGAGCTTACTGCATCAGACTGTTCTTTTTGTCACGTCAAATACTAGTATGTATGTCCTGTCTCACACTCGATATTTCTTGTTGCAGAGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCAATTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGTGTTTCGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGGAGAACAGGTTGTTCCTGCCTCTGAACTTGCTGCCGCCATGAAGCAGATTAAAGAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTATTGCCCGGGGATGGGGAGTAAGCTTAGTCAGCCGTTGTCTCCGGGTGTCGCGTGCGCAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTGAGCGAAAACCTGCTGTACCGCCATCGAAACGGGCACATACAGGCAGAGTGGCCGTGAAAGAAAGCAATCAGCGATGGTGCTCTGACGGGTTCGAGTTCTGCTGTGATAACGGAGAGAGACTGCGTGTCACGTTCGCGCTGGACTGCTGTGATCGTGAGGCACTGCACTGGGCGGTCACTACCGGCGGCTTCAACAGTGAAACAGTACAGGACGACATGCTGGGAGCGGTGGAACGCCGCTTCGGCAACGATCTTCCGTCGTCTCCAGTGGAGTGGCAGACGGATAATGGTTCATGCTACCGGGCTAATGAAACACGCCAGTTCGCCCGGATGTTGGGACTTGAACCGAAGAACACGGCGGTGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCATGTAAATTCTTATATATACT</genome_strand>
        <mrna_strand>TGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGG....................................................................................................................................................................................................................................................................................................................................................................................................GATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAG...........................................................................................................................................................................................................................................................................................................................................AGGAGAAAAAAGTTCANGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCATGTAAATNCTTATATATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E272934" ref_strand="+" ref_description="SGN-E272934 [cLEM-25-L12]">
      <seq>ttaagttaaagaataaattgcagctcctcacagttgggattggtggtgttggtgtgatttcagcttatatctcttattctcctgaaataacagtaagttacactgctgggttgattggttctttgatgtacatgcgtatgcttggaaacagtgtggattctatgcagtcagatggacccagagcacttattaagggagctgttgggcagccaaggctattggttcctgttactttggtcatgatttttaatcggtggaatgggatcctagtcccagagtatggattcatgcacctcgagttgatacccatgctagtcggatttttcacttacaagattgcaacttttgtccaagcaatcgaggaaggtgtatcgatcattggaaataagtcacaagcttagctctagtttttatgattttccatcaacctctaatgaaaatagtagaggagaaaaaagttcaagaagacgttggattcgaaaaatgagctacaacatctatactcaatttatcactggatggattgaacaaatcgatgatttcctcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="6262" stop="2158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6063" g_stop="6059" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6058" i_stop="5961" i_length="98">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5960" g_stop="5869" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="97" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5868" i_stop="5446" i_length="423">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5445" g_stop="5350" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="193" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5349" i_stop="4869" i_length="481">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4868" g_stop="4800" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="262" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4799" i_stop="4412" i_length="388">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4411" g_stop="4228" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="446" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4227" i_stop="3897" i_length="331">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3896" g_stop="3837" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="506" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3836" i_stop="2501" i_length="1336">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2500" g_stop="2459" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="548" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E272934" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6063" e_stop="6059"/>
          <exon e_start="5960" e_stop="5869"/>
          <exon e_start="5445" e_stop="5350"/>
          <exon e_start="4868" e_stop="4800"/>
          <exon e_start="4411" e_stop="4228"/>
          <exon e_start="3896" e_stop="3837"/>
          <exon e_start="2500" e_stop="2459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAGGTAATCCAAAACTTCCTATATGGCTATATGCTTTAATTCCTTTACACGTCAACGTTAGAATTACTCGTGTTTGATTTACTATTGTTGTAGTGGGACATGACCCCTATTTATTACAAACCGTTCCTCCAATTAGTATATTGGTCCCTTAAGTTGTCAGTTTGAAAAATTTCTTGACGAAGAGAATCTTAATTTGCTTATTTCTTCTGATTTGTGTAACTGATGCAATGTATGGAAATTTCCTCGACTGAAATATCTTTAGCTGCTAGAATTCTTGTAATGTCCTCTGTCAGGCCTGGACGTTTTTAGCTTCTCTTTGCTTAGATTTAATTAATGTAAGGAATCTTTAGTTTTTTCAAATCTGGCAATAGCACTCATGCAGAAATTGTGGTGTTAATGAACTGTTGTATTTTTTCATTCTTGCAGTTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAAGTACATTTTTTGATTGTTTATCTTTACCAAATGGCTCCTTCTATGCCATTCTTGCATTATCTCAAACCTAAACATCATTTGTTTCTTTGTGTTGCATGTGCGTGTCTTAATGGAGGCGATTGATGCCAATTGACAATAGGAAGCCCAATTTTCTTATGCGTTTTGCATGAGCTACACTGCTACTATTTTACAGCATTTTGTAAAATTGTTAATGGAGCATCCTATTACCACTTCATCACATTTAAATCGATATTGTCATTTTTGAATTGTAATTGTACGTGGTCACTCAAATAGTAGTTCTTAGCGAATTGTCAGTTTCATCGTTCCAGGATTGGAAGTCATTAACTCACAGTCATAGTAGAAGCCAAACACTTGCATGATTAAATGATGCTGTTGTTTGAGACTAAGAAGAGTAGCTATATCCCTAAAACGGACTGTTTTGAGCTCTGCTTGATAAGCTTAACCGAACTTTTAATTTCAGGGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGGGTAAGCTCTACCACTATTACGATATTGACCAAAAAGATATGTGTCGAGATTAACTGTTAAATAAAACTTCTCTTCTTGATTCAAGCAAATTTCTTAGAACCTCTTGTTTATTTTCTGAAAACTACTATTGGTAGCATAAATCTATCTGCAATCTGAACTCAAGGAAGTTGGGGCTATTTTATGGGGCTTCAACTTCCTCTCTTGATCCATTTTCTCGCCATTTTCCTGCTTGTACACGCCAAAAAATCCAGCCTAGTTTAACTTTTTTCCGCATTCCCCCCTTTTTACTTCTACTACACTTGCATCCAAAGAATACTTTAATGACTTCTCTTTCATTGTTATGAAGAGTTGCCTAAGCATTTGATCTTACAATTTGATTTATTTCCAGGATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAGGTATGCTTCAACTGAACCTCCCATCTACAACTTTTATCATATTTTCAAATTACCATGAATCTTAGATTTGAATAAATGTGTTCAAATTTTCGTGTTCCATCTTAGTATAGAACTTGTTTAGAACCATGCCGTGGAATAACCAGTAAAGTTGTTGTCTAGGGGGTCACGGGTTCAAGCCCTGGAAACCAGCAGGGTAAGGTTGAGTACAGTGGACCCTTGTGTCCAGCTCTTCTCCGGATATACATGGAGCTTACTGCATCAGACTGTTCTTTTTGTCACGTCAAATACTAGTATGTATGTCCTGTCTCACACTCGATATTTCTTGTTGCAGAGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCAATTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGTGTTTCGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGGAGAACAGGTTGTTCCTGCCTCTGAACTTGCTGCCGCCATGAAGCAGATTAAAGAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTATTGCCCGGGGATGGGGAGTAAGCTTAGTCAGCCGTTGTCTCCGGGTGTCGCGTGCGCAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTGAGCGAAAACCTGCTGTACCGCCATCGAAACGGGCACATACAGGCAGAGTGGCCGTGAAAGAAAGCAATCAGCGATGGTGCTCTGACGGGTTCGAGTTCTGCTGTGATAACGGAGAGAGACTGCGTGTCACGTTCGCGCTGGACTGCTGTGATCGTGAGGCACTGCACTGGGCGGTCACTACCGGCGGCTTCAACAGTGAAACAGTACAGGACGACATGCTGGGAGCGGTGGAACGCCGCTTCGGCAACGATCTTCCGTCGTCTCCAGTGGAGTGGCAGACGGATAATGGTTCATGCTACCGGGCTAATGAAACACGCCAGTTCGCCCGGATGTTGGGACTTGAACCGAAGAACACGGCGGTGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCAT</genome_strand>
        <mrna_strand>TTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGG....................................................................................................................................................................................................................................................................................................................................................................................................GATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAG...........................................................................................................................................................................................................................................................................................................................................AGGAGAAAAAAGTTCAAGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E280568" ref_strand="+" ref_description="SGN-E280568 [cLER-1-M6]">
      <seq>tgcaactgggggcagtgacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagttgggattggtggtgttggtgtgatttcagcttatatctcttattctcctgaaataacagtaagttacactgctgggttgattggttctttgatgtacatgcgtatgcttggaaacagtgtggattctatgcagtcagatggacccagagcacttattaagggagctgttgggcagccaaggctattggttcctgttgctttggtcatgatttttaatcggtggaatgggatcctagtcccagagtatggattcatgcacctcgagttgatacccatgctagtcggatttttcacttacaagattgcaacttttgtccaagcaatcgaggaaggtgtatcgatcattggaaataagtcacaagcttagctctagtttttatgattttccatcaacctctaatgaaaatagtagaggagaaaaaagttcaggaagacgttggattcgaaaaatgagctacaacatctatactcaatttatcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="6593" stop="3531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6293" g_stop="6278" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6277" i_stop="6140" i_length="138">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6139" g_stop="6059" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="97" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6058" i_stop="5961" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5960" g_stop="5869" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="189" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5868" i_stop="5446" i_length="423">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5445" g_stop="5350" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="285" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5349" i_stop="4869" i_length="481">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4868" g_stop="4800" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="354" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4799" i_stop="4412" i_length="388">
            <donor d_prob="0.913" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4411" g_stop="4228" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="538" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4227" i_stop="3897" i_length="331">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3896" g_stop="3831" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="604" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E280568" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6293" e_stop="6278"/>
          <exon e_start="6139" e_stop="6059"/>
          <exon e_start="5960" e_stop="5869"/>
          <exon e_start="5445" e_stop="5350"/>
          <exon e_start="4868" e_stop="4800"/>
          <exon e_start="4411" e_stop="4228"/>
          <exon e_start="3896" e_stop="3831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAGGTAATCCAAAACTTCCTATATGGCTATATGCTTTAATTCCTTTACACGTCAACGTTAGAATTACTCGTGTTTGATTTACTATTGTTGTAGTGGGACATGACCCCTATTTATTACAAACCGTTCCTCCAATTAGTATATTGGTCCCTTAAGTTGTCAGTTTGAAAAATTTCTTGACGAAGAGAATCTTAATTTGCTTATTTCTTCTGATTTGTGTAACTGATGCAATGTATGGAAATTTCCTCGACTGAAATATCTTTAGCTGCTAGAATTCTTGTAATGTCCTCTGTCAGGCCTGGACGTTTTTAGCTTCTCTTTGCTTAGATTTAATTAATGTAAGGAATCTTTAGTTTTTTCAAATCTGGCAATAGCACTCATGCAGAAATTGTGGTGTTAATGAACTGTTGTATTTTTTCATTCTTGCAGTTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAAGTACATTTTTTGATTGTTTATCTTTACCAAATGGCTCCTTCTATGCCATTCTTGCATTATCTCAAACCTAAACATCATTTGTTTCTTTGTGTTGCATGTGCGTGTCTTAATGGAGGCGATTGATGCCAATTGACAATAGGAAGCCCAATTTTCTTATGCGTTTTGCATGAGCTACACTGCTACTATTTTACAGCATTTTGTAAAATTGTTAATGGAGCATCCTATTACCACTTCATCACATTTAAATCGATATTGTCATTTTTGAATTGTAATTGTACGTGGTCACTCAAATAGTAGTTCTTAGCGAATTGTCAGTTTCATCGTTCCAGGATTGGAAGTCATTAACTCACAGTCATAGTAGAAGCCAAACACTTGCATGATTAAATGATGCTGTTGTTTGAGACTAAGAAGAGTAGCTATATCCCTAAAACGGACTGTTTTGAGCTCTGCTTGATAAGCTTAACCGAACTTTTAATTTCAGGGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGGGTAAGCTCTACCACTATTACGATATTGACCAAAAAGATATGTGTCGAGATTAACTGTTAAATAAAACTTCTCTTCTTGATTCAAGCAAATTTCTTAGAACCTCTTGTTTATTTTCTGAAAACTACTATTGGTAGCATAAATCTATCTGCAATCTGAACTCAAGGAAGTTGGGGCTATTTTATGGGGCTTCAACTTCCTCTCTTGATCCATTTTCTCGCCATTTTCCTGCTTGTACACGCCAAAAAATCCAGCCTAGTTTAACTTTTTTCCGCATTCCCCCCTTTTTACTTCTACTACACTTGCATCCAAAGAATACTTTAATGACTTCTCTTTCATTGTTATGAAGAGTTGCCTAAGCATTTGATCTTACAATTTGATTTATTTCCAGGATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAGGTATGCTTCAACTGAACCTCCCATCTACAACTTTTATCATATTTTCAAATTACCATGAATCTTAGATTTGAATAAATGTGTTCAAATTTTCGTGTTCCATCTTAGTATAGAACTTGTTTAGAACCATGCCGTGGAATAACCAGTAAAGTTGTTGTCTAGGGGGTCACGGGTTCAAGCCCTGGAAACCAGCAGGGTAAGGTTGAGTACAGTGGACCCTTGTGTCCAGCTCTTCTCCGGATATACATGGAGCTTACTGCATCAGACTGTTCTTTTTGTCACGTCAAATACTAGTATGTATGTCCTGTCTCACACTCGATATTTCTTGTTGCAGAGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCAATTTAT</genome_strand>
        <mrna_strand>TGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTGCTTTGGTCATGATTTTTAATCGGTGGAATGG....................................................................................................................................................................................................................................................................................................................................................................................................GATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAG...........................................................................................................................................................................................................................................................................................................................................AGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCAATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E269216" ref_strand="+" ref_description="SGN-E269216 [cLEI-16-D8]">
      <seq>tttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagttgggattggtggtgttggtgtgatttcagcttatatctcttattctcctgaaataacagtaagttacactgctgggttgattggttctttgatgtacatgcgtatgcttggaaacagtgtggattctatgcagtcagatggacccagagcacttattaagggagctgttgggcagccaaggctattggttcctgttactttggtcatgatttttaatcggtggaatgggatcctagtcccagagtatggattcatgcacctcgagttgatacccatgctagtcggatttttcacttacaagattgcaacttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="6667" stop="4026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6367" g_stop="6278" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6277" i_stop="6140" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6139" g_stop="6059" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="171" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6058" i_stop="5961" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5960" g_stop="5869" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="263" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5868" i_stop="5446" i_length="423">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5445" g_stop="5350" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="359" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5349" i_stop="4869" i_length="481">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4868" g_stop="4800" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="428" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4799" i_stop="4412" i_length="388">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4411" g_stop="4326" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="514" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E269216" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6367" e_stop="6278"/>
          <exon e_start="6139" e_stop="6059"/>
          <exon e_start="5960" e_stop="5869"/>
          <exon e_start="5445" e_stop="5350"/>
          <exon e_start="4868" e_stop="4800"/>
          <exon e_start="4411" e_stop="4326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAGGTAATCCAAAACTTCCTATATGGCTATATGCTTTAATTCCTTTACACGTCAACGTTAGAATTACTCGTGTTTGATTTACTATTGTTGTAGTGGGACATGACCCCTATTTATTACAAACCGTTCCTCCAATTAGTATATTGGTCCCTTAAGTTGTCAGTTTGAAAAATTTCTTGACGAAGAGAATCTTAATTTGCTTATTTCTTCTGATTTGTGTAACTGATGCAATGTATGGAAATTTCCTCGACTGAAATATCTTTAGCTGCTAGAATTCTTGTAATGTCCTCTGTCAGGCCTGGACGTTTTTAGCTTCTCTTTGCTTAGATTTAATTAATGTAAGGAATCTTTAGTTTTTTCAAATCTGGCAATAGCACTCATGCAGAAATTGTGGTGTTAATGAACTGTTGTATTTTTTCATTCTTGCAGTTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAAGTACATTTTTTGATTGTTTATCTTTACCAAATGGCTCCTTCTATGCCATTCTTGCATTATCTCAAACCTAAACATCATTTGTTTCTTTGTGTTGCATGTGCGTGTCTTAATGGAGGCGATTGATGCCAATTGACAATAGGAAGCCCAATTTTCTTATGCGTTTTGCATGAGCTACACTGCTACTATTTTACAGCATTTTGTAAAATTGTTAATGGAGCATCCTATTACCACTTCATCACATTTAAATCGATATTGTCATTTTTGAATTGTAATTGTACGTGGTCACTCAAATAGTAGTTCTTAGCGAATTGTCAGTTTCATCGTTCCAGGATTGGAAGTCATTAACTCACAGTCATAGTAGAAGCCAAACACTTGCATGATTAAATGATGCTGTTGTTTGAGACTAAGAAGAGTAGCTATATCCCTAAAACGGACTGTTTTGAGCTCTGCTTGATAAGCTTAACCGAACTTTTAATTTCAGGGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGGGTAAGCTCTACCACTATTACGATATTGACCAAAAAGATATGTGTCGAGATTAACTGTTAAATAAAACTTCTCTTCTTGATTCAAGCAAATTTCTTAGAACCTCTTGTTTATTTTCTGAAAACTACTATTGGTAGCATAAATCTATCTGCAATCTGAACTCAAGGAAGTTGGGGCTATTTTATGGGGCTTCAACTTCCTCTCTTGATCCATTTTCTCGCCATTTTCCTGCTTGTACACGCCAAAAAATCCAGCCTAGTTTAACTTTTTTCCGCATTCCCCCCTTTTTACTTCTACTACACTTGCATCCAAAGAATACTTTAATGACTTCTCTTTCATTGTTATGAAGAGTTGCCTAAGCATTTGATCTTACAATTTGATTTATTTCCAGGATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTG</genome_strand>
        <mrna_strand>TTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGG....................................................................................................................................................................................................................................................................................................................................................................................................GATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E371678" ref_strand="+" ref_description="SGN-E371678 [TUS-29-K22]">
      <seq>tgcaactgggggcagtgacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagttgggattggtggtgttggtgtgatttcagcttatatctcttattctcctgaaataacagtaagttacactgctgggttgattggttctttgatgtacatgcgtatgcttggaaacagtgtggattctatgcagacagatggacccatatcacttattaatggagctgttgggcagccaacgctattggttcctgttgcttatgatatgagcttacattggcggaacggaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="6593" stop="4500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6293" g_stop="6278" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6277" i_stop="6140" i_length="138">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6139" g_stop="6059" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="97" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6058" i_stop="5961" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5960" g_stop="5869" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="189" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5868" i_stop="5446" i_length="423">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5445" g_stop="5350" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="285" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5349" i_stop="4869" i_length="481">
            <donor d_prob="0.955" d_score="0.94"/>
            <acceptor a_prob="0.939" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4868" g_stop="4800" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="354" r_length="69" r_score="0.797"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E371678" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6293" e_stop="6278"/>
          <exon e_start="6139" e_stop="6059"/>
          <exon e_start="5960" e_stop="5869"/>
          <exon e_start="5445" e_stop="5350"/>
          <exon e_start="4868" e_stop="4800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAGGTAATCCAAAACTTCCTATATGGCTATATGCTTTAATTCCTTTACACGTCAACGTTAGAATTACTCGTGTTTGATTTACTATTGTTGTAGTGGGACATGACCCCTATTTATTACAAACCGTTCCTCCAATTAGTATATTGGTCCCTTAAGTTGTCAGTTTGAAAAATTTCTTGACGAAGAGAATCTTAATTTGCTTATTTCTTCTGATTTGTGTAACTGATGCAATGTATGGAAATTTCCTCGACTGAAATATCTTTAGCTGCTAGAATTCTTGTAATGTCCTCTGTCAGGCCTGGACGTTTTTAGCTTCTCTTTGCTTAGATTTAATTAATGTAAGGAATCTTTAGTTTTTTCAAATCTGGCAATAGCACTCATGCAGAAATTGTGGTGTTAATGAACTGTTGTATTTTTTCATTCTTGCAGTTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAAGTACATTTTTTGATTGTTTATCTTTACCAAATGGCTCCTTCTATGCCATTCTTGCATTATCTCAAACCTAAACATCATTTGTTTCTTTGTGTTGCATGTGCGTGTCTTAATGGAGGCGATTGATGCCAATTGACAATAGGAAGCCCAATTTTCTTATGCGTTTTGCATGAGCTACACTGCTACTATTTTACAGCATTTTGTAAAATTGTTAATGGAGCATCCTATTACCACTTCATCACATTTAAATCGATATTGTCATTTTTGAATTGTAATTGTACGTGGTCACTCAAATAGTAGTTCTTAGCGAATTGTCAGTTTCATCGTTCCAGGATTGGAAGTCATTAACTCACAGTCATAGTAGAAGCCAAACACTTGCATGATTAAATGATGCTGTTGTTTGAGACTAAGAAGAGTAGCTATATCCCTAAAACGGACTGTTTTGAGCTCTGCTTGATAAGCTTAACCGAACTTTTAATTTCAGGGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGG</genome_strand>
        <mrna_strand>TGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGACAGATGGACCCATATCACTTATTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCTGTTGGGCAGCCAACGCTATTGGTTCCTGTTGCTTATGATATGAGCTTACATTGGCGGAACGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E730552" ref_strand="+" ref_description="SGN-E730552 [LA24BH09]">
      <seq>ctatgatcaaaaaacacaaccccatcactccaaattgaacaaaaatgggagttctaagctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaacaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagttgggattggtggtgttggtgtgatttcagcttatatctcttattctcctgaaataacagtaagttacactgctgggttgattggttctttgatgtacatgcgtatgcttggaaacagtgtggattctatgcagtcagatggacccagagcacttattaagggagctgttgggcagccaaggctattggttcctgttgctttggtcatgatttttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8480" stop="4511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8181" g_stop="7820" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6668" g_stop="6619" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="405" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6538" g_stop="6463" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="481" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6462" i_stop="6340" i_length="123">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6339" g_stop="6278" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="543" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6277" i_stop="6140" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6139" g_stop="6059" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="624" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6058" i_stop="5961" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5960" g_stop="5869" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="716" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5868" i_stop="5446" i_length="423">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5445" g_stop="5350" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="812" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="5349" i_stop="4869" i_length="481">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4868" g_stop="4811" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="813" r_stop="870" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E730552" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8181" e_stop="7820"/>
          <exon e_start="6668" e_stop="6619"/>
          <exon e_start="6538" e_stop="6463"/>
          <exon e_start="6339" e_stop="6278"/>
          <exon e_start="6139" e_stop="6059"/>
          <exon e_start="5960" e_stop="5869"/>
          <exon e_start="5445" e_stop="5350"/>
          <exon e_start="4868" e_stop="4811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAGGTAATCCAAAACTTCCTATATGGCTATATGCTTTAATTCCTTTACACGTCAACGTTAGAATTACTCGTGTTTGATTTACTATTGTTGTAGTGGGACATGACCCCTATTTATTACAAACCGTTCCTCCAATTAGTATATTGGTCCCTTAAGTTGTCAGTTTGAAAAATTTCTTGACGAAGAGAATCTTAATTTGCTTATTTCTTCTGATTTGTGTAACTGATGCAATGTATGGAAATTTCCTCGACTGAAATATCTTTAGCTGCTAGAATTCTTGTAATGTCCTCTGTCAGGCCTGGACGTTTTTAGCTTCTCTTTGCTTAGATTTAATTAATGTAAGGAATCTTTAGTTTTTTCAAATCTGGCAATAGCACTCATGCAGAAATTGTGGTGTTAATGAACTGTTGTATTTTTTCATTCTTGCAGTTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAAGTACATTTTTTGATTGTTTATCTTTACCAAATGGCTCCTTCTATGCCATTCTTGCATTATCTCAAACCTAAACATCATTTGTTTCTTTGTGTTGCATGTGCGTGTCTTAATGGAGGCGATTGATGCCAATTGACAATAGGAAGCCCAATTTTCTTATGCGTTTTGCATGAGCTACACTGCTACTATTTTACAGCATTTTGTAAAATTGTTAATGGAGCATCCTATTACCACTTCATCACATTTAAATCGATATTGTCATTTTTGAATTGTAATTGTACGTGGTCACTCAAATAGTAGTTCTTAGCGAATTGTCAGTTTCATCGTTCCAGGATTGGAAGTCATTAACTCACAGTCATAGTAGAAGCCAAACACTTGCATGATTAAATGATGCTGTTGTTTGAGACTAAGAAGAGTAGCTATATCCCTAAAACGGACTGTTTTGAGCTCTGCTTGATAAGCTTAACCGAACTTTTAATTTCAGGGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAAT</genome_strand>
        <mrna_strand>CTATGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGA-TTT-TAT---AT--GGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA...........................................................................................................................CACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTGCTTTGGTCATGATTTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E729566" ref_strand="+" ref_description="SGN-E729566 [LA21BG08]">
      <seq>ctaatctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagttgggattggtggtgttggtgtgatttcagcttatatctcttattctcctgaaataacagtaagttacactgctgggttgattggttctttgatgtacatgcgtatgcttggaaacagtgtggattctatgcagtcagatggacccagagcacttattaagggagctgttgggcagccaaggctattggttcctgttgctttggtcatgatttttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8428" stop="4511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8128" g_stop="7820" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6668" g_stop="6619" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="359" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6538" g_stop="6463" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="435" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6462" i_stop="6374" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6373" g_stop="6278" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="531" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6277" i_stop="6140" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6139" g_stop="6059" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="612" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6058" i_stop="5961" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5960" g_stop="5869" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="704" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5868" i_stop="5446" i_length="423">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5445" g_stop="5350" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="800" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="5349" i_stop="4869" i_length="481">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4868" g_stop="4811" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="801" r_stop="858" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E729566" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8128" e_stop="7820"/>
          <exon e_start="6668" e_stop="6619"/>
          <exon e_start="6538" e_stop="6463"/>
          <exon e_start="6373" e_stop="6278"/>
          <exon e_start="6139" e_stop="6059"/>
          <exon e_start="5960" e_stop="5869"/>
          <exon e_start="5445" e_stop="5350"/>
          <exon e_start="4868" e_stop="4811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAGGTAATCCAAAACTTCCTATATGGCTATATGCTTTAATTCCTTTACACGTCAACGTTAGAATTACTCGTGTTTGATTTACTATTGTTGTAGTGGGACATGACCCCTATTTATTACAAACCGTTCCTCCAATTAGTATATTGGTCCCTTAAGTTGTCAGTTTGAAAAATTTCTTGACGAAGAGAATCTTAATTTGCTTATTTCTTCTGATTTGTGTAACTGATGCAATGTATGGAAATTTCCTCGACTGAAATATCTTTAGCTGCTAGAATTCTTGTAATGTCCTCTGTCAGGCCTGGACGTTTTTAGCTTCTCTTTGCTTAGATTTAATTAATGTAAGGAATCTTTAGTTTTTTCAAATCTGGCAATAGCACTCATGCAGAAATTGTGGTGTTAATGAACTGTTGTATTTTTTCATTCTTGCAGTTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAAGTACATTTTTTGATTGTTTATCTTTACCAAATGGCTCCTTCTATGCCATTCTTGCATTATCTCAAACCTAAACATCATTTGTTTCTTTGTGTTGCATGTGCGTGTCTTAATGGAGGCGATTGATGCCAATTGACAATAGGAAGCCCAATTTTCTTATGCGTTTTGCATGAGCTACACTGCTACTATTTTACAGCATTTTGTAAAATTGTTAATGGAGCATCCTATTACCACTTCATCACATTTAAATCGATATTGTCATTTTTGAATTGTAATTGTACGTGGTCACTCAAATAGTAGTTCTTAGCGAATTGTCAGTTTCATCGTTCCAGGATTGGAAGTCATTAACTCACAGTCATAGTAGAAGCCAAACACTTGCATGATTAAATGATGCTGTTGTTTGAGACTAAGAAGAGTAGCTATATCCCTAAAACGGACTGTTTTGAGCTCTGCTTGATAAGCTTAACCGAACTTTTAATTTCAGGGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAAT</genome_strand>
        <mrna_strand>CTAATCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTGCTTTGGTCATGATTTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E730307" ref_strand="+" ref_description="SGN-E730307 [LA23CH10]">
      <seq>gggagttctaagctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagttgggattggtggtgttggtgtgatttcagcttatatctcttattctcctgaaataacagtaagttacactgctgggttgattggttctttgatgtacatgcgtatgcttggaaacagtgtggattctatgcagtcagatggacccagagcacttattaanggagctgttgggcagcccaagctattggttcctgctgctttggtcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8435" stop="4519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8135" g_stop="7820" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6668" g_stop="6619" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="366" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6538" g_stop="6463" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="442" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6462" i_stop="6374" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6373" g_stop="6278" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="538" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6277" i_stop="6140" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6139" g_stop="6059" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="619" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6058" i_stop="5961" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5960" g_stop="5869" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="711" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5868" i_stop="5446" i_length="423">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5445" g_stop="5350" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="807" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="5349" i_stop="4869" i_length="481">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4868" g_stop="4819" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="808" r_stop="857" r_length="50" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E730307" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8135" e_stop="7820"/>
          <exon e_start="6668" e_stop="6619"/>
          <exon e_start="6538" e_stop="6463"/>
          <exon e_start="6373" e_stop="6278"/>
          <exon e_start="6139" e_stop="6059"/>
          <exon e_start="5960" e_stop="5869"/>
          <exon e_start="5445" e_stop="5350"/>
          <exon e_start="4868" e_stop="4819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAGGTAATCCAAAACTTCCTATATGGCTATATGCTTTAATTCCTTTACACGTCAACGTTAGAATTACTCGTGTTTGATTTACTATTGTTGTAGTGGGACATGACCCCTATTTATTACAAACCGTTCCTCCAATTAGTATATTGGTCCCTTAAGTTGTCAGTTTGAAAAATTTCTTGACGAAGAGAATCTTAATTTGCTTATTTCTTCTGATTTGTGTAACTGATGCAATGTATGGAAATTTCCTCGACTGAAATATCTTTAGCTGCTAGAATTCTTGTAATGTCCTCTGTCAGGCCTGGACGTTTTTAGCTTCTCTTTGCTTAGATTTAATTAATGTAAGGAATCTTTAGTTTTTTCAAATCTGGCAATAGCACTCATGCAGAAATTGTGGTGTTAATGAACTGTTGTATTTTTTCATTCTTGCAGTTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAAGTACATTTTTTGATTGTTTATCTTTACCAAATGGCTCCTTCTATGCCATTCTTGCATTATCTCAAACCTAAACATCATTTGTTTCTTTGTGTTGCATGTGCGTGTCTTAATGGAGGCGATTGATGCCAATTGACAATAGGAAGCCCAATTTTCTTATGCGTTTTGCATGAGCTACACTGCTACTATTTTACAGCATTTTGTAAAATTGTTAATGGAGCATCCTATTACCACTTCATCACATTTAAATCGATATTGTCATTTTTGAATTGTAATTGTACGTGGTCACTCAAATAGTAGTTCTTAGCGAATTGTCAGTTTCATCGTTCCAGGATTGGAAGTCATTAACTCACAGTCATAGTAGAAGCCAAACACTTGCATGATTAAATGATGCTGTTGTTTGAGACTAAGAAGAGTAGCTATATCCCTAAAACGGACTGTTTTGAGCTCTGCTTGATAAGCTTAACCGAACTTTTAATTTCAGGGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGA</genome_strand>
        <mrna_strand>GGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NGGAGCTGTTGGGCAGCCCAAGCTATTGGTTCCTGCTGCTTTGGTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E709602" ref_strand="+" ref_description="SGN-E709602 [FA52CB12]">
      <seq>gctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagttgggattggtggtgttggtgtgatttcagcttatatctcttattctcctgaaataacagtaagttacactgctgggttgattggttctttgatgtacatgcgtatgcttggaaacagtgtggattctatgcagtcagatggaccccgagcacttattaagggagctgttgggcagccaaggctattggttcctgttgctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8424" stop="4526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8124" g_stop="7820" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6668" g_stop="6619" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="355" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6538" g_stop="6463" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="431" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6462" i_stop="6374" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6373" g_stop="6278" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="527" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6277" i_stop="6140" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6139" g_stop="6059" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="608" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6058" i_stop="5961" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5960" g_stop="5869" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="700" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5868" i_stop="5446" i_length="423">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5445" g_stop="5350" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="796" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="5349" i_stop="4869" i_length="481">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4868" g_stop="4826" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="797" r_stop="839" r_length="43" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E709602" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8124" e_stop="7820"/>
          <exon e_start="6668" e_stop="6619"/>
          <exon e_start="6538" e_stop="6463"/>
          <exon e_start="6373" e_stop="6278"/>
          <exon e_start="6139" e_stop="6059"/>
          <exon e_start="5960" e_stop="5869"/>
          <exon e_start="5445" e_stop="5350"/>
          <exon e_start="4868" e_stop="4826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAGGTAATCCAAAACTTCCTATATGGCTATATGCTTTAATTCCTTTACACGTCAACGTTAGAATTACTCGTGTTTGATTTACTATTGTTGTAGTGGGACATGACCCCTATTTATTACAAACCGTTCCTCCAATTAGTATATTGGTCCCTTAAGTTGTCAGTTTGAAAAATTTCTTGACGAAGAGAATCTTAATTTGCTTATTTCTTCTGATTTGTGTAACTGATGCAATGTATGGAAATTTCCTCGACTGAAATATCTTTAGCTGCTAGAATTCTTGTAATGTCCTCTGTCAGGCCTGGACGTTTTTAGCTTCTCTTTGCTTAGATTTAATTAATGTAAGGAATCTTTAGTTTTTTCAAATCTGGCAATAGCACTCATGCAGAAATTGTGGTGTTAATGAACTGTTGTATTTTTTCATTCTTGCAGTTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAAGTACATTTTTTGATTGTTTATCTTTACCAAATGGCTCCTTCTATGCCATTCTTGCATTATCTCAAACCTAAACATCATTTGTTTCTTTGTGTTGCATGTGCGTGTCTTAATGGAGGCGATTGATGCCAATTGACAATAGGAAGCCCAATTTTCTTATGCGTTTTGCATGAGCTACACTGCTACTATTTTACAGCATTTTGTAAAATTGTTAATGGAGCATCCTATTACCACTTCATCACATTTAAATCGATATTGTCATTTTTGAATTGTAATTGTACGTGGTCACTCAAATAGTAGTTCTTAGCGAATTGTCAGTTTCATCGTTCCAGGATTGGAAGTCATTAACTCACAGTCATAGTAGAAGCCAAACACTTGCATGATTAAATGATGCTGTTGTTTGAGACTAAGAAGAGTAGCTATATCCCTAAAACGGACTGTTTTGAGCTCTGCTTGATAAGCTTAACCGAACTTTTAATTTCAGGGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTG</genome_strand>
        <mrna_strand>GCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCCGAGCACTTATTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E370518" ref_strand="+" ref_description="SGN-E370518 [TUS-29-K23]">
      <seq>tgcaactgggggcagtgacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagttgggattggtggtgttggtgtgatttcagcttatatctcttattctcctgaaataacagtaagttacactgctgggttgattggttctttgatgtacatgcgtatgcttggaaacagtgtggattctatgcagacagatggacccagagcacttattaagggagctgttgggcagccaaggctattgggtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="6593" stop="4535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6293" g_stop="6278" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6277" i_stop="6140" i_length="138">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6139" g_stop="6059" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="97" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6058" i_stop="5961" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5960" g_stop="5869" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="189" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5868" i_stop="5446" i_length="423">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5445" g_stop="5350" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="285" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5349" i_stop="4869" i_length="481">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4868" g_stop="4835" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="319" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E370518" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6293" e_stop="6278"/>
          <exon e_start="6139" e_stop="6059"/>
          <exon e_start="5960" e_stop="5869"/>
          <exon e_start="5445" e_stop="5350"/>
          <exon e_start="4868" e_stop="4835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAGGTAATCCAAAACTTCCTATATGGCTATATGCTTTAATTCCTTTACACGTCAACGTTAGAATTACTCGTGTTTGATTTACTATTGTTGTAGTGGGACATGACCCCTATTTATTACAAACCGTTCCTCCAATTAGTATATTGGTCCCTTAAGTTGTCAGTTTGAAAAATTTCTTGACGAAGAGAATCTTAATTTGCTTATTTCTTCTGATTTGTGTAACTGATGCAATGTATGGAAATTTCCTCGACTGAAATATCTTTAGCTGCTAGAATTCTTGTAATGTCCTCTGTCAGGCCTGGACGTTTTTAGCTTCTCTTTGCTTAGATTTAATTAATGTAAGGAATCTTTAGTTTTTTCAAATCTGGCAATAGCACTCATGCAGAAATTGTGGTGTTAATGAACTGTTGTATTTTTTCATTCTTGCAGTTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAAGTACATTTTTTGATTGTTTATCTTTACCAAATGGCTCCTTCTATGCCATTCTTGCATTATCTCAAACCTAAACATCATTTGTTTCTTTGTGTTGCATGTGCGTGTCTTAATGGAGGCGATTGATGCCAATTGACAATAGGAAGCCCAATTTTCTTATGCGTTTTGCATGAGCTACACTGCTACTATTTTACAGCATTTTGTAAAATTGTTAATGGAGCATCCTATTACCACTTCATCACATTTAAATCGATATTGTCATTTTTGAATTGTAATTGTACGTGGTCACTCAAATAGTAGTTCTTAGCGAATTGTCAGTTTCATCGTTCCAGGATTGGAAGTCATTAACTCACAGTCATAGTAGAAGCCAAACACTTGCATGATTAAATGATGCTGTTGTTTGAGACTAAGAAGAGTAGCTATATCCCTAAAACGGACTGTTTTGAGCTCTGCTTGATAAGCTTAACCGAACTTTTAATTTCAGGGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCT</genome_strand>
        <mrna_strand>TGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGACAGATGGACCCAGAGCACTTATTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTTGGGCAGCCAAGGCTATTGGGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E728069" ref_strand="+" ref_description="SGN-E728069 [LA16CD12]">
      <seq>tgggagttctaagctactgttacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagttgggattggtggtgttggtgtgatttcagcttatatctcttattctcctgaaataacagtaagttacactgctgggttgattggttctttgatgtacatgcgtatgcttggaaacagtgtggattctatgcagtcagatggacccagagcacttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8436" stop="5053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8136" g_stop="7820" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6668" g_stop="6619" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="367" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6538" g_stop="6463" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="443" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6462" i_stop="6374" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6373" g_stop="6278" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="539" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6277" i_stop="6140" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6139" g_stop="6059" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="620" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6058" i_stop="5961" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5960" g_stop="5869" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="712" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5868" i_stop="5446" i_length="423">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5445" g_stop="5353" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="805" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E728069" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8136" e_stop="7820"/>
          <exon e_start="6668" e_stop="6619"/>
          <exon e_start="6538" e_stop="6463"/>
          <exon e_start="6373" e_stop="6278"/>
          <exon e_start="6139" e_stop="6059"/>
          <exon e_start="5960" e_stop="5869"/>
          <exon e_start="5445" e_stop="5353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAGGTAATCCAAAACTTCCTATATGGCTATATGCTTTAATTCCTTTACACGTCAACGTTAGAATTACTCGTGTTTGATTTACTATTGTTGTAGTGGGACATGACCCCTATTTATTACAAACCGTTCCTCCAATTAGTATATTGGTCCCTTAAGTTGTCAGTTTGAAAAATTTCTTGACGAAGAGAATCTTAATTTGCTTATTTCTTCTGATTTGTGTAACTGATGCAATGTATGGAAATTTCCTCGACTGAAATATCTTTAGCTGCTAGAATTCTTGTAATGTCCTCTGTCAGGCCTGGACGTTTTTAGCTTCTCTTTGCTTAGATTTAATTAATGTAAGGAATCTTTAGTTTTTTCAAATCTGGCAATAGCACTCATGCAGAAATTGTGGTGTTAATGAACTGTTGTATTTTTTCATTCTTGCAGTTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTAT</genome_strand>
        <mrna_strand>TGGGAGTTCTAAGCTACTGTTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E343878" ref_strand="+" ref_description="SGN-E343878 [cTOF-12-L15]">
      <seq>gagggagttctaagctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagttggaattggtggtggttggtgtgatttcagcttatatctcttattctcctgaaatacagtaagttacactggctgggttgattggttctttgatgtacatgcgtatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8435" stop="5102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8137" g_stop="7820" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6668" g_stop="6619" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="368" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6538" g_stop="6463" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="444" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6462" i_stop="6374" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6373" g_stop="6278" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="540" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6277" i_stop="6140" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6139" g_stop="6059" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="621" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6058" i_stop="5961" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5960" g_stop="5869" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="713" r_length="92" r_score="0.957"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5868" i_stop="5446" i_length="423">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5445" g_stop="5402" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="758" r_length="45" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E343878" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8137" e_stop="7820"/>
          <exon e_start="6668" e_stop="6619"/>
          <exon e_start="6538" e_stop="6463"/>
          <exon e_start="6373" e_stop="6278"/>
          <exon e_start="6139" e_stop="6059"/>
          <exon e_start="5960" e_stop="5869"/>
          <exon e_start="5445" e_stop="5402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGT-GTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAGGTAATCCAAAACTTCCTATATGGCTATATGCTTTAATTCCTTTACACGTCAACGTTAGAATTACTCGTGTTTGATTTACTATTGTTGTAGTGGGACATGACCCCTATTTATTACAAACCGTTCCTCCAATTAGTATATTGGTCCCTTAAGTTGTCAGTTTGAAAAATTTCTTGACGAAGAGAATCTTAATTTGCTTATTTCTTCTGATTTGTGTAACTGATGCAATGTATGGAAATTTCCTCGACTGAAATATCTTTAGCTGCTAGAATTCTTGTAATGTCCTCTGTCAGGCCTGGACGTTTTTAGCTTCTCTTTGCTTAGATTTAATTAATGTAAGGAATCTTTAGTTTTTTCAAATCTGGCAATAGCACTCATGCAGAAATTGTGGTGTTAATGAACTGTTGTATTTTTTCATTCTTGCAGTTACACT-GCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGC</genome_strand>
        <mrna_strand>GAGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGAATTGGTGGTGGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAAT-ACAGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACTGGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E269605" ref_strand="+" ref_description="SGN-E269605 [cLEM-2-H5]">
      <seq>gctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagttgggattggtggtgttggtgtgatttcagcttatatctcttattctcctgaaataacagtaagttacactgctgggttgattggttctttgatgtacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8281" stop="5109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7981" g_stop="7820" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6668" g_stop="6619" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="212" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6538" g_stop="6463" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="288" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6462" i_stop="6374" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6373" g_stop="6278" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="384" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6277" i_stop="6140" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6139" g_stop="6059" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="465" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6058" i_stop="5961" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5960" g_stop="5869" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="557" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5868" i_stop="5446" i_length="423">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5445" g_stop="5409" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="594" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E269605" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7981" e_stop="7820"/>
          <exon e_start="6668" e_stop="6619"/>
          <exon e_start="6538" e_stop="6463"/>
          <exon e_start="6373" e_stop="6278"/>
          <exon e_start="6139" e_stop="6059"/>
          <exon e_start="5960" e_stop="5869"/>
          <exon e_start="5445" e_stop="5409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAGGTAATCCAAAACTTCCTATATGGCTATATGCTTTAATTCCTTTACACGTCAACGTTAGAATTACTCGTGTTTGATTTACTATTGTTGTAGTGGGACATGACCCCTATTTATTACAAACCGTTCCTCCAATTAGTATATTGGTCCCTTAAGTTGTCAGTTTGAAAAATTTCTTGACGAAGAGAATCTTAATTTGCTTATTTCTTCTGATTTGTGTAACTGATGCAATGTATGGAAATTTCCTCGACTGAAATATCTTTAGCTGCTAGAATTCTTGTAATGTCCTCTGTCAGGCCTGGACGTTTTTAGCTTCTCTTTGCTTAGATTTAATTAATGTAAGGAATCTTTAGTTTTTTCAAATCTGGCAATAGCACTCATGCAGAAATTGTGGTGTTAATGAACTGTTGTATTTTTTCATTCTTGCAGTTACACTGCTGGGTTGATTGGTTCTTTGATGTACATG</genome_strand>
        <mrna_strand>GCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E408453" ref_strand="+" ref_description="SGN-E408453 [PPI-11-K13]">
      <seq>ggagttctaaactactgctacctctcagttacttctacggccacacccatatctcaagattcttcaaataatccaaccccattgtcaattccaacacaatccaagcagaaacctgtgaaattgtctagtggggtggctgctactggggactatgctgctgacccacccactaccactactaagcttaggaagtattggggtgaggatgtggatcctctcacatctgatgattttatatggaatacggaatttatgggtcgaatgaagaagtacattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaacagccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctccttttactgcatctcaaaaatggcggccagcaccaacacgacgggagcaggagaagtggggcaaagctgccaaggctgcaactgggggcagtgatgttatgttcagggaaataaaacgccctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagctaaagaataaattgcagcttctcacagttgggattggtggtggttgggtgtgatttcagcttatatctcttattctcctgaaatagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8434" stop="5574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8134" g_stop="7820" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6668" g_stop="6619" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="365" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6538" g_stop="6463" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="441" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6462" i_stop="6374" i_length="89">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6373" g_stop="6278" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="537" r_length="96" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6277" i_stop="6140" i_length="138">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6139" g_stop="6059" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="618" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6058" i_stop="5961" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5960" g_stop="5874" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="707" r_length="89" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E408453" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8134" e_stop="7820"/>
          <exon e_start="6668" e_stop="6619"/>
          <exon e_start="6538" e_stop="6463"/>
          <exon e_start="6373" e_stop="6278"/>
          <exon e_start="6139" e_stop="6059"/>
          <exon e_start="5960" e_stop="5874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGT-GTT-GGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACA</genome_strand>
        <mrna_strand>GGAGTTCTAAACTACTGCTACCTCTCAGTTACTTCTACGGCCACACCCATATCTCAAGATTCTTCAAATAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAACCTGTGAAATTGTCTAGTGGGGTGGCTGCTACTGGGGACTATGCTGCTGACCCACCCACTACCACTACTAAGCTTAGGAAGTATTGGGGTGAGGATGTGGATCCTCTCACATCTGATGATTTTATATGGAATACGGAATTTATGGGTCGAATGAAGAAGTACATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACAGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTCCTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGGGAGCAGGAGAAGTGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT..........................................................................................................................................GATGTTATGTTCAGGGAAATAAAACGCCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................CTAAAGAATAAATTGCAGCTTCTCACAGTTGGGATTGGTGGTGGTTGGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E346235" ref_strand="+" ref_description="SGN-E346235 [cTOF-23-E12]">
      <seq>agctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagttgggattggtggtgtttggtgtgatttcagcttatatctcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8425" stop="5589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8125" g_stop="7820" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6668" g_stop="6619" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="356" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6538" g_stop="6463" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="432" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6462" i_stop="6374" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6373" g_stop="6278" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="528" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6277" i_stop="6140" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6139" g_stop="6059" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="609" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6058" i_stop="5961" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5960" g_stop="5889" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="682" r_length="73" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E346235" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8125" e_stop="7820"/>
          <exon e_start="6668" e_stop="6619"/>
          <exon e_start="6538" e_stop="6463"/>
          <exon e_start="6373" e_stop="6278"/>
          <exon e_start="6139" e_stop="6059"/>
          <exon e_start="5960" e_stop="5889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTG-TTGGTGTGATTTCAGCTTATATCTCTTAT</genome_strand>
        <mrna_strand>AGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTTGGTGTGATTTCAGCTTATATCTCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E372562" ref_strand="+" ref_description="SGN-E372562 [TUS-31-E5]">
      <seq>ttttcccttgtctataagatcaaaaaacacaaccccatcactccaaattgaacaaaaatgggagttctaagctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8494" stop="5631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8194" g_stop="7820" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6668" g_stop="6619" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="425" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6538" g_stop="6463" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="501" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6462" i_stop="6374" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6373" g_stop="6278" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="597" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6277" i_stop="6140" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6139" g_stop="6059" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="678" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6058" i_stop="5961" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5960" g_stop="5931" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="708" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E372562" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8194" e_stop="7820"/>
          <exon e_start="6668" e_stop="6619"/>
          <exon e_start="6538" e_stop="6463"/>
          <exon e_start="6373" e_stop="6278"/>
          <exon e_start="6139" e_stop="6059"/>
          <exon e_start="5960" e_stop="5931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCCTTGTCTATAAGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTT</genome_strand>
        <mrna_strand>TTTTCCCTTGTCTATAAGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E339390" ref_strand="+" ref_description="SGN-E339390 [cTOF-4-M23]">
      <seq>ggagttctaagctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgtacgtcattgaagcttgcaattagttcattgcttgtaacttaatttataatatttctttgctcacctcgtctctaactaataagatagagaaatatggttctctaagttgtagttccgaaatttttttatcatccangacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8434" stop="5782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8134" g_stop="7820" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6668" g_stop="6619" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="365" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6538" g_stop="6463" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="441" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6462" i_stop="6374" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6373" g_stop="6082" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="733" r_length="292" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E339390" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8134" e_stop="7820"/>
          <exon e_start="6668" e_stop="6619"/>
          <exon e_start="6538" e_stop="6463"/>
          <exon e_start="6373" e_stop="6082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTC</genome_strand>
        <mrna_strand>GGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCANGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E339371" ref_strand="+" ref_description="SGN-E339371 [cTOF-4-G9]">
      <seq>ggagttctaagctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgtacgtcattgaagcttgcaattagttcattgcttgtaacttaatttataatatttctttgctcacctcgtctctaactaataagatagagaaatatggttctctaagttgtagttccgaaatttttttatcatccaggacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8434" stop="5782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8134" g_stop="7820" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6668" g_stop="6619" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="365" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6538" g_stop="6463" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="441" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6462" i_stop="6374" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6373" g_stop="6082" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="733" r_length="292" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E339371" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8134" e_stop="7820"/>
          <exon e_start="6668" e_stop="6619"/>
          <exon e_start="6538" e_stop="6463"/>
          <exon e_start="6373" e_stop="6082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTC</genome_strand>
        <mrna_strand>GGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E298590" ref_strand="+" ref_description="SGN-E298590 [cLET-41-J18]">
      <seq>aatgggagttctaagctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcacgatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagcgacgtgatgttgagggaaataaaacgtcctcaagggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8438" stop="5802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8138" g_stop="7820" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6668" g_stop="6619" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="369" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6538" g_stop="6463" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="445" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6462" i_stop="6374" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6373" g_stop="6278" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="541" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6277" i_stop="6140" i_length="138">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6139" g_stop="6102" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="579" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E298590" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8138" e_stop="7820"/>
          <exon e_start="6668" e_stop="6619"/>
          <exon e_start="6538" e_stop="6463"/>
          <exon e_start="6373" e_stop="6278"/>
          <exon e_start="6139" e_stop="6102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGA</genome_strand>
        <mrna_strand>AATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCACGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGC..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E325944" ref_strand="+" ref_description="SGN-E325944 [cTOC-12-B20]">
      <seq>tacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgacgtgatgttgagggaaataaaacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8416" stop="5813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8116" g_stop="7820" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6668" g_stop="6619" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="347" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6538" g_stop="6463" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="423" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6462" i_stop="6374" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6373" g_stop="6278" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="519" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6277" i_stop="6140" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6139" g_stop="6113" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="546" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E325944" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8116" e_stop="7820"/>
          <exon e_start="6668" e_stop="6619"/>
          <exon e_start="6538" e_stop="6463"/>
          <exon e_start="6373" e_stop="6278"/>
          <exon e_start="6139" e_stop="6113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGT</genome_strand>
        <mrna_strand>TACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E295492" ref_strand="+" ref_description="SGN-E295492 [cLET-23-I8]">
      <seq>ttctaagctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgacgtgatgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8430" stop="5966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8130" g_stop="7820" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6668" g_stop="6619" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="361" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6538" g_stop="6463" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="437" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6462" i_stop="6374" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6373" g_stop="6278" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="533" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6277" i_stop="6140" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6139" g_stop="6127" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="546" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E295492" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8130" e_stop="7820"/>
          <exon e_start="6668" e_stop="6619"/>
          <exon e_start="6538" e_stop="6463"/>
          <exon e_start="6373" e_stop="6278"/>
          <exon e_start="6139" e_stop="6127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGA</genome_strand>
        <mrna_strand>TTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E326268" ref_strand="+" ref_description="SGN-E326268 [cTOC-14-G13]">
      <seq>aattacctctacagccacacgcatatctgaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcatgatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgacgtgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8408" stop="5967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8108" g_stop="7820" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6668" g_stop="6619" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="339" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6538" g_stop="6463" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="415" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6462" i_stop="6374" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6373" g_stop="6278" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="511" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6277" i_stop="6140" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6139" g_stop="6130" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="521" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E326268" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8108" e_stop="7820"/>
          <exon e_start="6668" e_stop="6619"/>
          <exon e_start="6538" e_stop="6463"/>
          <exon e_start="6373" e_stop="6278"/>
          <exon e_start="6139" e_stop="6130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGT</genome_strand>
        <mrna_strand>AATTACCTCTACAGCCACACGCATATCTGAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCATGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E268104" ref_strand="+" ref_description="SGN-E268104 [cLEI-15-G15]">
      <seq>acggctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcatgatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgacgtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8413" stop="5969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8117" g_stop="7820" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6668" g_stop="6619" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="348" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6538" g_stop="6463" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="424" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6462" i_stop="6374" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6373" g_stop="6278" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="520" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6277" i_stop="6140" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6139" g_stop="6131" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="529" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E268104" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8117" e_stop="7820"/>
          <exon e_start="6668" e_stop="6619"/>
          <exon e_start="6538" e_stop="6463"/>
          <exon e_start="6373" e_stop="6278"/>
          <exon e_start="6139" e_stop="6131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATG</genome_strand>
        <mrna_strand>ACGGCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCATGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E282503" ref_strand="+" ref_description="SGN-E282503 [cLER-18-I22]">
      <seq>tactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8422" stop="5977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8122" g_stop="7820" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6668" g_stop="6619" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="353" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6538" g_stop="6463" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="429" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6462" i_stop="6374" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6373" g_stop="6278" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="525" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E282503" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8122" e_stop="7820"/>
          <exon e_start="6668" e_stop="6619"/>
          <exon e_start="6538" e_stop="6463"/>
          <exon e_start="6373" e_stop="6278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT</genome_strand>
        <mrna_strand>TACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E266099" ref_strand="+" ref_description="SGN-E266099 [cLEI-6-D21]">
      <seq>ttctaagctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8430" stop="6004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8130" g_stop="7820" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6668" g_stop="6619" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="361" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6538" g_stop="6463" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="437" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6462" i_stop="6374" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6373" g_stop="6304" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="507" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E266099" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8130" e_stop="7820"/>
          <exon e_start="6668" e_stop="6619"/>
          <exon e_start="6538" e_stop="6463"/>
          <exon e_start="6373" e_stop="6304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAG</genome_strand>
        <mrna_strand>TTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E325845" ref_strand="+" ref_description="SGN-E325845 [cTOC-12-B12]">
      <seq>ggagttctaagctacttctacctcccaattacctctacagccacacgcatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8434" stop="6008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8134" g_stop="7820" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6668" g_stop="6619" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="365" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6538" g_stop="6463" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="441" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6462" i_stop="6374" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6373" g_stop="6308" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="507" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E325845" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8134" e_stop="7820"/>
          <exon e_start="6668" e_stop="6619"/>
          <exon e_start="6538" e_stop="6463"/>
          <exon e_start="6373" e_stop="6308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGC</genome_strand>
        <mrna_strand>GGAGTTCTAAGCTACTTCTACCTCCCAATTACCTCTACAGCCACACGCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E269645" ref_strand="+" ref_description="SGN-E269645 [cLEM-2-L18]">
      <seq>aaacacaaccccatcactccaaattgaacaaaaatgggagttctaagctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8470" stop="6021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8170" g_stop="7820" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6668" g_stop="6619" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="401" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6538" g_stop="6463" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="477" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6462" i_stop="6374" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6373" g_stop="6321" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="530" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E269645" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8170" e_stop="7820"/>
          <exon e_start="6668" e_stop="6619"/>
          <exon e_start="6538" e_stop="6463"/>
          <exon e_start="6373" e_stop="6321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCA</genome_strand>
        <mrna_strand>AAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E271858" ref_strand="+" ref_description="SGN-E271858 [cLEM-8-J19]">
      <seq>tactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaagagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8422" stop="6030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8122" g_stop="7820" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6668" g_stop="6619" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="353" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6538" g_stop="6463" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="429" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6462" i_stop="6374" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6373" g_stop="6330" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="473" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E271858" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8122" e_stop="7820"/>
          <exon e_start="6668" e_stop="6619"/>
          <exon e_start="6538" e_stop="6463"/>
          <exon e_start="6373" e_stop="6330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACG</genome_strand>
        <mrna_strand>TACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAAGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E419260" ref_strand="+" ref_description="SGN-E419260 [STM-29-C8]">
      <seq>caaacttttttcatggccaaacaataaaaaggaagcaatgtcatcatcaaccagggtccacccttatcatatacttgctaccaattgacactaagatatttgtttttccttgtctataagatcaagaaacacaaccccatcactccaaattgaacaaaaatgggagttctaaactactgctacctctcagttacctctacagccacacccatatctcaagattctttaaataatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctactggggactatgctgctgacccacccactaccactactaagctcaggaagtattggggtgaggatgtggatcctctcacctctgatgattttatatggaatacggaatttatgggtcgcatgaagaagtacattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaacagccccttcacaacctgttctagaaccagaagtcgaaaatactcaggctccttttactgcatctcaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8590" stop="6049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8292" g_stop="7820" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6668" g_stop="6619" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="527" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6538" g_stop="6463" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="603" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6462" i_stop="6374" i_length="89">
            <donor d_prob="0.938" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6373" g_stop="6349" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="628" r_length="25" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E419260" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E419260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8292" e_stop="7820"/>
          <exon e_start="6668" e_stop="6619"/>
          <exon e_start="6538" e_stop="6463"/>
          <exon e_start="6373" e_stop="6349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACTTTTTCATAGCCAAACAATAAAAAGGAAGCAATGTTATCATCAAAAAGGGTCCACCCTTATC--AT--TTACTACCAATTGGCACTAAGATATTTATTTTCCCTTGTCTATAAGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAAT</genome_strand>
        <mrna_strand>CAAACTTTTTTCATGGCCAAACAATAAAAAGGAAGCAATGTCATCATCAACCAGGGTCCACCCTTATCATATACTTGCTACCAATTGACACTAAGATATTTGTTTTTCCTTGTCTATAAGATCAAGAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAACTACTGCTACCTCTCAGTTACCTCTACAGCCACACCCATATCTCAAGATTCTTTAAATAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTACTGGGGACTATGCTGCTGACCCACCCACTACCACTACTAAGCTCAGGAAGTATTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATACGGAATTTATGGGTCGCATGAAGAAGTACATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACAGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAG.........................................................................................GCTCCTTTTACTGCATCTCAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E267697" ref_strand="+" ref_description="SGN-E267697 [cLEI-12-G2]">
      <seq>aatgggagttctaagctactgctacctcccaattacctctacagccacacccatatctcaagattctgcaaacaatgcaaccccattgtcaattccaacacagtccaagcagaaatctgagaaatgagtctagcggggtggctgctaatggggactatgctgctgaccggccgactaccactactaagcttaggaagtactggggtgaggatgtggatgctctcacctctgatgatatgatatggaataaggaatttatgggtcgcatgaagaggcatattcaggatcctcaagaaaatgcccctgctgctgctgaaaaggaagagatatcaggaatacttagcttaaacagagtcatgaatctcgacagtttggaagttgacttgaccaatgagctaactgccccttcacaacctgttctagaaccagaagtcgaaaagactcaagctggttttactgcatatgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8438" stop="6050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8138" g_stop="7820" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6668" g_stop="6619" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="370" r_length="50" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.041" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6538" g_stop="6463" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="446" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6462" i_stop="6374" i_length="89">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6373" g_stop="6350" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="470" r_length="24" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E267697" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8138" e_stop="7820"/>
          <exon e_start="6668" e_stop="6619"/>
          <exon e_start="6538" e_stop="6463"/>
          <exon e_start="6373" e_stop="6350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAAT-TGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAA</genome_strand>
        <mrna_strand>AATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTGCAAACAATGCAACCCCATTGTCAATTCCAACACAGTCCAAGCAGAAATCTGAGAAATGAGTCTAGCGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCGGCCGACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATGCTCTCACCTCTGATGATATGATATGGAATAAGGAATTTATGGGTCGCATGAAGAGGCATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGAATACTTAGCTTAAACAGAGTCATGAATCTCGACAG................................................................................TTTGGAAGTTGACTTGACCAATGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAAGACTCAA.........................................................................................GCTGGTTTTACTGCATATGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E477157" ref_strand="+" ref_description="SGN-E477157 [cSTB-47-K4]">
      <seq>cggaagcaatgttatcatcaaccagggtccacccttatcatatacttgctaccaattgacactaagatatttgtttttccttgtctataagatcaagaaacacaaccccatcactccaaattgcacaaaaatgggagttctaaactactgctacctctcagttacttctacggccacacccatatctcaagattcttcaaataatccaaccccattgtcaattccaacacaatccaagcagaaacctgtgaaattgtctagtggggtggctgctactggggactatgctgctgacccacccactaccactactaagcttacgaagtattggggtgaggatgcggatcctctcacatctgatgattttatatggaatacggaatttatgggtcgaatgaagaagtacattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaacagccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctccttttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8562" stop="6162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8263" g_stop="7820" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6668" g_stop="6619" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="498" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6538" g_stop="6463" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="574" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6462" i_stop="6374" i_length="89">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6373" g_stop="6362" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="586" r_length="12" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E477157" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8263" e_stop="7820"/>
          <exon e_start="6668" e_stop="6619"/>
          <exon e_start="6538" e_stop="6463"/>
          <exon e_start="6373" e_stop="6362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGCAATGTTATCATCAAAAAGGGTCCACCCTTATCAT-T---TACTACCAATTGGCACTAAGATATTTATTTTCCCTTGTCTATAAGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACT</genome_strand>
        <mrna_strand>CGGAAGCAATGTTATCATCAACCAGGGTCCACCCTTATCATATACTTGCTACCAATTGACACTAAGATATTTGTTTTTCCTTGTCTATAAGATCAAGAAACACAACCCCATCACTCCAAATTGCACAAAAATGGGAGTTCTAAACTACTGCTACCTCTCAGTTACTTCTACGGCCACACCCATATCTCAAGATTCTTCAAATAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAACCTGTGAAATTGTCTAGTGGGGTGGCTGCTACTGGGGACTATGCTGCTGACCCACCCACTACCACTACTAAGCTTACGAAGTATTGGGGTGAGGATGCGGATCCTCTCACATCTGATGATTTTATATGGAATACGGAATTTATGGGTCGAATGAAGAAGTACATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACAGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTCCTTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E280181" ref_strand="+" ref_description="SGN-E280181 [cLEL-7-M20]">
      <seq>gcacgagctacagccacacccatatctcaagattcttcaaacaatccagccccattgtcaattccaacacactccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8400" stop="6162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8106" g_stop="7820" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6668" g_stop="6619" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="338" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6538" g_stop="6463" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="414" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E280181" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8106" e_stop="7820"/>
          <exon e_start="6668" e_stop="6619"/>
          <exon e_start="6538" e_stop="6463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAC-CTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA</genome_strand>
        <mrna_strand>GCACGAGCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAGCCCCATTGTCAATTCCAACACACTCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E281764" ref_strand="+" ref_description="SGN-E281764 [cLER-14-O9]">
      <seq>ttctaagctactgctacctcccaattacctgtacagccacacccatatctcaagattcttcaaacaatccaaccccattgttaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8430" stop="6189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8130" g_stop="7820" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6668" g_stop="6619" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="361" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6538" g_stop="6489" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="411" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E281764" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8130" e_stop="7820"/>
          <exon e_start="6668" e_stop="6619"/>
          <exon e_start="6538" e_stop="6489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTC</genome_strand>
        <mrna_strand>TTCTAAGCTACTGCTACCTCCCAATTACCTGTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTTAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E443752" ref_strand="+" ref_description="SGN-E443752 [cSTA-39-N5]">
      <seq>caaacttttttcatggccaaacaatttaaaggaagcaatgtcatcatcaaccagggtccacccttatcatatacttgctaccaattgacactaagatatttgtttttccttgtctataagatcaagaaacacaaccccatcactccaaattgaacaaaaatgggagttctaaactactgctacctctcagttacctctacagccacacccatatctcaagattctttaaataatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctactggggactatgctgctgacccacccactaccactactaagctcaggaagtattggggtgaggatgtggatcctctcacctctgatgattttatatggaatacggaatttatgggtcgcatgaagaagtacattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcangatttcttagcttaaacagagtcatgaatcttgacagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8590" stop="6314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8292" g_stop="7820" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6668" g_stop="6619" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="527" r_length="50" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E443752" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8292" e_stop="7820"/>
          <exon e_start="6668" e_stop="6619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACTTTTTCATAGCCAAACAATAAAAAGGAAGCAATGTTATCATCAAAAAGGGTCCACCCTTATC--AT--TTACTACCAATTGGCACTAAGATATTTATTTTCCCTTGTCTATAAGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG</genome_strand>
        <mrna_strand>CAAACTTTTTTCATGGCCAAACAATTTAAAGGAAGCAATGTCATCATCAACCAGGGTCCACCCTTATCATATACTTGCTACCAATTGACACTAAGATATTTGTTTTTCCTTGTCTATAAGATCAAGAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAACTACTGCTACCTCTCAGTTACCTCTACAGCCACACCCATATCTCAAGATTCTTTAAATAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTACTGGGGACTATGCTGCTGACCCACCCACTACCACTACTAAGCTCAGGAAGTATTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATACGGAATTTATGGGTCGCATGAAGAAGTACATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCANGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E270686" ref_strand="+" ref_description="SGN-E270686 [cLEM-6-K16]">
      <seq>aaacacaaccccatcactccaaattgaacaaaaatgggagtgtctaagctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8470" stop="7579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8170" g_stop="7879" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E270686" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8170" e_stop="7879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGT-TCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGG</genome_strand>
        <mrna_strand>AAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTGTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E270852" ref_strand="+" ref_description="SGN-E270852 [cLEM-6-K8]">
      <seq>atatttattttcccttgtctataagatcaaaaaacacaaccccatcactccaaattgaacaaaaatgggagttctaagctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8501" stop="7607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8201" g_stop="7907" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E270852" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8201" e_stop="7907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTATTTTCCCTTGTCTATAAGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGAT</genome_strand>
        <mrna_strand>ATATTTATTTTCCCTTGTCTATAAGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E287842" ref_strand="+" ref_description="SGN-E287842 [cLES-19-C11]">
      <seq>ttttcccttgtctataagatcaaaaaacacaaccccatcactccaaattgaacaaaaatgggagttctaagctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8494" stop="7656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8194" g_stop="7956" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E287842" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8194" e_stop="7956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCCTTGTCTATAAGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTAC</genome_strand>
        <mrna_strand>TTTTCCCTTGTCTATAAGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E348765" ref_strand="+" ref_description="SGN-E348765 [cTOF-29-A12]">
      <seq>aagacccgagattttattgaacaatttttctccttctttccactcaaaaactccattgaagcagccaagagcttatactacacagtaatcaatatatttggaagtggcggatccagtctctcacaaagcaaggcagccgtttgttctcatcaagtgaatcggaatattgagcttctttttggatccaagaaatgaacttagggagactgaaaaatgtggtagctgctgcagcgattgaaggattagccgaggtaagggccaagatatttggtcatgtaattaatccaactgggcagcgatctgctcacaaggttttacgcaagaagctgatcggtgaaaaggtctcacaatggtacccacacgatatcatgaaagatgaccctcttgtgatggctcgtcaagagcaagagcgtctcagcaagcttgaaatgttgaaacgtcgtggaaaggggccacctaagaagggccagggcaaacaggctaagaaacgcaacaaatagagatgatagtctcactggtttgaaaaaaggggtatctaggattactatttgcaatttgattactaacttttctcatcagccacttgctttctagtgaacatcatctgcatactcttctacaatttttttccatatagtttgggctggtcgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="13122" stop="10418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12822" g_stop="12669" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12668" i_stop="11218" i_length="1451">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11217" g_stop="10718" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="653" r_length="499" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E348765" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12822" e_stop="12669"/>
          <exon e_start="11217" e_stop="10718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACCCGAGATTTTATTGAACAATTTTTCTCCTTCTTTCCACTCAAAAACTCCATTGAAGCAGCCAAGAGCTTATACTACACAGTAATCAATATATTTGGAAGTGGCGGATCCAGTCTCTCACAAAGCAAGGCAGCCGTTTGTTCTCATCAAGGTTCGCTCCATTCTACATTCTTCATTTTCTTTTTCTTTTTTTTCTAATTTAAATTTGAATGTGTACATTTTCTGTCGTAACCTCCTTCGCAACGAGTAAATTAGTTTGTGCTTTCCATTTTTTCTAAAGTTGAAATTTAGCTTGTTGTTTACATTTCTCTGATTTTGCTTAGTTGTTGTTTACATGTTATCAATGAAATGATTTACTTCATAAAGTTCACTGTTTTTGTGGATTAGTTTCATATTTTCAATAGGTTAATTTGAATAGTTCTATGTTCTGTGCATATTTCAGCTAACTCTGTCCACCAAAGCTCAAATAAATAGGAAAAAGTGGATACTTCTTTGTAAAATAATTATTGGACTGATTTAGGCTTACAAAATAGGGGTTCAAATAAACTTGGTATGCATTAGAAGCCTGAAAATTGAAAAATCATTTACATTTCTTGAGTTAGGATGCATACCGGCATATGCATTCACTATTTGATTTCCCAGGTCAAAAGAATTAATTTCCCTTGCACATATGTTGTGCTAGTGAACAAATAAGAAGGTTGATGTCTCTTTGGAATGTTGTAATTTTTTTTTTCTTCAAAAATACGTAAAGAAAGTGATGTCTCGTAACTCTTCTTGATATATAGGCGATTTAGAAGTTTTTGGGATGATGGAATATACAATGGGAATGAGATTTTGTGATTGAGTCGGGGACTGATGGCGTTATTCAGGAAGCCTTTTCATGATTTTCCTTTTGAGAATTTAGAAGCATGTCTAAGGTTTCAAGCTGAGGTTGTGTCGAGCTTTCTGTTCTGTTTTCCTTTTTAGAGTCTTCCGGTCCATCGTTTGTTTCTATAGTTGGAGAACTTTGTATTCTGGTCATTCCCAGCATACTAATGGAAAAGCATGACCAACGATATCTTGTTGTTCCTGTAAAGCGGAGAATATGCATCTAATTCTTTGTATTTATCTGAGAGCAACTTGTGATATTTTTATCAGAGAAATAGAATGAATGTGATATAGAGGGGACTAATGTGACAATCTGTGTCGACGTTTTGAGTAGGTAATACACAATCTGTGTTGGTTACTTTGATTCTTTTTTTTCTTAAACGGAAGTTTTGTTTGAATTTTGATCATTGTTTGGACCAAATATAAATAGGATGTTATCAATCCGAAATGTGATATAAACTATAAACTGAGGGGTGCTTGAAATATGACTGGTTTTGTATGTATACTTATTTTGTAATTCTGTTGTCCATCAAAGACAAGCAAAGTTTTAATTCGTGATGAATTTATATATGTTTAGTATTTCTTTAGTTTTCGATTGATTGCATGCTGCACTTAAGGACCTTAGCCTTTTTTTGTTGCAATTTTTACTTTCAAGAACAATGAGTCTGATATATTTACAATTGTGTTAGGCTTCTCACTGAACCTTCTTTGAGACTCTGCTTCTCCTTTGTGCAGTGAATCGGAATATTGAGCTTCTTTTTGGATCCAAGAAATGAACTTAGGGAGACTGAAAAATGTGGTAGCTGCTGCAGCGATTGAAGGATTAGCCGAGGTAAGGGCCAAGATATTTGGTCATGTAATTAATCCAACTGGGCAGCGATCTGCTCACAAGGTTTTACGCAAGAAGCTGATCGGTGAAAAGGTCTCACAATGGTACCCACACGATATCATGAAAGATGACCCTCTTGTGATGGCTCGTCAAGAGCAAGAGCGTCTCAGCAAGCTTGAAATGTTGAAACGTCGTGGAAAGGGGCCACCTAAGAAGGGCCAGGGCAAACAGGCTAAGAAACGCAACAAATAGAGATGATAGTCTCACTGGTTTGAAATAAAGGGGTATCTAGGATTACTATTTGCAATTTGATTACTAACTTTTCTCATCAGCCACTTGCTTTCTAGTGAACATCATCTGCATACTCTTCTACAATTTTTTTCCATATAGTTTGGGCTGTTCGAGC</genome_strand>
        <mrna_strand>AAGACCCGAGATTTTATTGAACAATTTTTCTCCTTCTTTCCACTCAAAAACTCCATTGAAGCAGCCAAGAGCTTATACTACACAGTAATCAATATATTTGGAAGTGGCGGATCCAGTCTCTCACAAAGCAAGGCAGCCGTTTGTTCTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATCGGAATATTGAGCTTCTTTTTGGATCCAAGAAATGAACTTAGGGAGACTGAAAAATGTGGTAGCTGCTGCAGCGATTGAAGGATTAGCCGAGGTAAGGGCCAAGATATTTGGTCATGTAATTAATCCAACTGGGCAGCGATCTGCTCACAAGGTTTTACGCAAGAAGCTGATCGGTGAAAAGGTCTCACAATGGTACCCACACGATATCATGAAAGATGACCCTCTTGTGATGGCTCGTCAAGAGCAAGAGCGTCTCAGCAAGCTTGAAATGTTGAAACGTCGTGGAAAGGGGCCACCTAAGAAGGGCCAGGGCAAACAGGCTAAGAAACGCAACAAATAGAGATGATAGTCTCACTGGTTTGAAA-AAAGGGGTATCTAGGATTACTATTTGCAATTTGATTACTAACTTTTCTCATCAGCCACTTGCTTTCTAGTGAACATCATCTGCATACTCTTCTACAATTTTTTTCCATATAGTTTGGGCTGGTCGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E309276" ref_strand="+" ref_description="SGN-E309276 [cLEY-22-O18]">
      <seq>caaagcaaggcagccgtttgttctcatcaagtgaatcggaatattgagcttctttttggatccaagaaatgaacttagggagactgaaaaatgtggtagctgctgcagcgattgaaggattagccgaggtaagggccaagatatttggtcatgtaattaatccaactgggcagcgatctgctcacaaggttttacgcaagaagctgatcggtgaaaaggtctcacaatggtacccacacgatatcatgaaagatgaccctcttgtgatggctcgtcaagagcaagagcgtctcagcaagcttgaaatgttgaaacgtcgtggaaaggggccacctaagaagggccagggcaaacaggctaagaaacgcaacaaatagagatgatagtctcactggtttgaaataaaggggtatctaggattactatttgcaatttgattactaacttttctcatcagccacttgctttctagtgaacatcatctgcatanctcttctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="12999" stop="10449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12699" g_stop="12669" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12668" i_stop="11218" i_length="1451">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11217" g_stop="10750" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="500" r_length="469" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="501" polyA_stop="514"/>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E309276" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12699" e_stop="12669"/>
          <exon e_start="11217" e_stop="10750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCAAGGCAGCCGTTTGTTCTCATCAAGGTTCGCTCCATTCTACATTCTTCATTTTCTTTTTCTTTTTTTTCTAATTTAAATTTGAATGTGTACATTTTCTGTCGTAACCTCCTTCGCAACGAGTAAATTAGTTTGTGCTTTCCATTTTTTCTAAAGTTGAAATTTAGCTTGTTGTTTACATTTCTCTGATTTTGCTTAGTTGTTGTTTACATGTTATCAATGAAATGATTTACTTCATAAAGTTCACTGTTTTTGTGGATTAGTTTCATATTTTCAATAGGTTAATTTGAATAGTTCTATGTTCTGTGCATATTTCAGCTAACTCTGTCCACCAAAGCTCAAATAAATAGGAAAAAGTGGATACTTCTTTGTAAAATAATTATTGGACTGATTTAGGCTTACAAAATAGGGGTTCAAATAAACTTGGTATGCATTAGAAGCCTGAAAATTGAAAAATCATTTACATTTCTTGAGTTAGGATGCATACCGGCATATGCATTCACTATTTGATTTCCCAGGTCAAAAGAATTAATTTCCCTTGCACATATGTTGTGCTAGTGAACAAATAAGAAGGTTGATGTCTCTTTGGAATGTTGTAATTTTTTTTTTCTTCAAAAATACGTAAAGAAAGTGATGTCTCGTAACTCTTCTTGATATATAGGCGATTTAGAAGTTTTTGGGATGATGGAATATACAATGGGAATGAGATTTTGTGATTGAGTCGGGGACTGATGGCGTTATTCAGGAAGCCTTTTCATGATTTTCCTTTTGAGAATTTAGAAGCATGTCTAAGGTTTCAAGCTGAGGTTGTGTCGAGCTTTCTGTTCTGTTTTCCTTTTTAGAGTCTTCCGGTCCATCGTTTGTTTCTATAGTTGGAGAACTTTGTATTCTGGTCATTCCCAGCATACTAATGGAAAAGCATGACCAACGATATCTTGTTGTTCCTGTAAAGCGGAGAATATGCATCTAATTCTTTGTATTTATCTGAGAGCAACTTGTGATATTTTTATCAGAGAAATAGAATGAATGTGATATAGAGGGGACTAATGTGACAATCTGTGTCGACGTTTTGAGTAGGTAATACACAATCTGTGTTGGTTACTTTGATTCTTTTTTTTCTTAAACGGAAGTTTTGTTTGAATTTTGATCATTGTTTGGACCAAATATAAATAGGATGTTATCAATCCGAAATGTGATATAAACTATAAACTGAGGGGTGCTTGAAATATGACTGGTTTTGTATGTATACTTATTTTGTAATTCTGTTGTCCATCAAAGACAAGCAAAGTTTTAATTCGTGATGAATTTATATATGTTTAGTATTTCTTTAGTTTTCGATTGATTGCATGCTGCACTTAAGGACCTTAGCCTTTTTTTGTTGCAATTTTTACTTTCAAGAACAATGAGTCTGATATATTTACAATTGTGTTAGGCTTCTCACTGAACCTTCTTTGAGACTCTGCTTCTCCTTTGTGCAGTGAATCGGAATATTGAGCTTCTTTTTGGATCCAAGAAATGAACTTAGGGAGACTGAAAAATGTGGTAGCTGCTGCAGCGATTGAAGGATTAGCCGAGGTAAGGGCCAAGATATTTGGTCATGTAATTAATCCAACTGGGCAGCGATCTGCTCACAAGGTTTTACGCAAGAAGCTGATCGGTGAAAAGGTCTCACAATGGTACCCACACGATATCATGAAAGATGACCCTCTTGTGATGGCTCGTCAAGAGCAAGAGCGTCTCAGCAAGCTTGAAATGTTGAAACGTCGTGGAAAGGGGCCACCTAAGAAGGGCCAGGGCAAACAGGCTAAGAAACGCAACAAATAGAGATGATAGTCTCACTGGTTTGAAATAAAGGGGTATCTAGGATTACTATTTGCAATTTGATTACTAACTTTTCTCATCAGCCACTTGCTTTCTAGTGAACATCATCTGCATA-CTCTTCTACA</genome_strand>
        <mrna_strand>CAAAGCAAGGCAGCCGTTTGTTCTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATCGGAATATTGAGCTTCTTTTTGGATCCAAGAAATGAACTTAGGGAGACTGAAAAATGTGGTAGCTGCTGCAGCGATTGAAGGATTAGCCGAGGTAAGGGCCAAGATATTTGGTCATGTAATTAATCCAACTGGGCAGCGATCTGCTCACAAGGTTTTACGCAAGAAGCTGATCGGTGAAAAGGTCTCACAATGGTACCCACACGATATCATGAAAGATGACCCTCTTGTGATGGCTCGTCAAGAGCAAGAGCGTCTCAGCAAGCTTGAAATGTTGAAACGTCGTGGAAAGGGGCCACCTAAGAAGGGCCAGGGCAAACAGGCTAAGAAACGCAACAAATAGAGATGATAGTCTCACTGGTTTGAAATAAAGGGGTATCTAGGATTACTATTTGCAATTTGATTACTAACTTTTCTCATCAGCCACTTGCTTTCTAGTGAACATCATCTGCATANCTCTTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E323076" ref_strand="+" ref_description="SGN-E323076 [cTOB-28-G22]">
      <seq>gaagtggcggatccagtctctcacaaagcaaggcagccgtttgttctcatcaaggcgatttagaagtttttgggatgatggaatatacaatgggaatgagattttgtgattgagtcggggactgatggcgttattcaggaagccttttcatgattttccttttgagaatttagaagcatgtctaaggtttcaagctgaggttgtgtcgagctttctgttctgttttcctttttagagtcttccggtccatcgtttgtttctatagttggagaactttgtattctggtcattcccagcatactaatggaaaagcatgaccaacgatatcttgttgttcctgtaaagcggagaatatgcatctaattctttgtatttatctgagagcaacttgtgatatttttatcagagaaatagaatgaatgtgatatagaggggactaatgtgacaatctgtgtcgacgttttgagtaggtaatacacaatctgtgttggttactttgattctttttttcttaaacggaagttttgtttgaattttgatcattgtttgggacaaatataaataggatgttatcaatccgaaatgtgatataaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="13022" stop="11193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12722" g_stop="12669" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12668" i_stop="12035" i_length="634">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12034" g_stop="11493" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="595" r_length="541" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E323076" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12722" e_stop="12669"/>
          <exon e_start="12034" e_stop="11493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTGGCGGATCCAGTCTCTCACAAAGCAAGGCAGCCGTTTGTTCTCATCAAGGTTCGCTCCATTCTACATTCTTCATTTTCTTTTTCTTTTTTTTCTAATTTAAATTTGAATGTGTACATTTTCTGTCGTAACCTCCTTCGCAACGAGTAAATTAGTTTGTGCTTTCCATTTTTTCTAAAGTTGAAATTTAGCTTGTTGTTTACATTTCTCTGATTTTGCTTAGTTGTTGTTTACATGTTATCAATGAAATGATTTACTTCATAAAGTTCACTGTTTTTGTGGATTAGTTTCATATTTTCAATAGGTTAATTTGAATAGTTCTATGTTCTGTGCATATTTCAGCTAACTCTGTCCACCAAAGCTCAAATAAATAGGAAAAAGTGGATACTTCTTTGTAAAATAATTATTGGACTGATTTAGGCTTACAAAATAGGGGTTCAAATAAACTTGGTATGCATTAGAAGCCTGAAAATTGAAAAATCATTTACATTTCTTGAGTTAGGATGCATACCGGCATATGCATTCACTATTTGATTTCCCAGGTCAAAAGAATTAATTTCCCTTGCACATATGTTGTGCTAGTGAACAAATAAGAAGGTTGATGTCTCTTTGGAATGTTGTAATTTTTTTTTTCTTCAAAAATACGTAAAGAAAGTGATGTCTCGTAACTCTTCTTGATATATAGGCGATTTAGAAGTTTTTGGGATGATGGAATATACAATGGGAATGAGATTTTGTGATTGAGTCGGGGACTGATGGCGTTATTCAGGAAGCCTTTTCATGATTTTCCTTTTGAGAATTTAGAAGCATGTCTAAGGTTTCAAGCTGAGGTTGTGTCGAGCTTTCTGTTCTGTTTTCCTTTTTAGAGTCTTCCGGTCCATCGTTTGTTTCTATAGTTGGAGAACTTTGTATTCTGGTCATTCCCAGCATACTAATGGAAAAGCATGACCAACGATATCTTGTTGTTCCTGTAAAGCGGAGAATATGCATCTAATTCTTTGTATTTATCTGAGAGCAACTTGTGATATTTTTATCAGAGAAATAGAATGAATGTGATATAGAGGGGACTAATGTGACAATCTGTGTCGACGTTTTGAGTAGGTAATACACAATCTGTGTTGGTTACTTTGATTCTTTTTTTTCTTAAACGGAAGTTTTGTTTGAATTTTGATCATTGTTTGGACCAAATATAAATAGGATGTTATCAATCCGAAATGTGATATAAAC</genome_strand>
        <mrna_strand>GAAGTGGCGGATCCAGTCTCTCACAAAGCAAGGCAGCCGTTTGTTCTCATCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATTTAGAAGTTTTTGGGATGATGGAATATACAATGGGAATGAGATTTTGTGATTGAGTCGGGGACTGATGGCGTTATTCAGGAAGCCTTTTCATGATTTTCCTTTTGAGAATTTAGAAGCATGTCTAAGGTTTCAAGCTGAGGTTGTGTCGAGCTTTCTGTTCTGTTTTCCTTTTTAGAGTCTTCCGGTCCATCGTTTGTTTCTATAGTTGGAGAACTTTGTATTCTGGTCATTCCCAGCATACTAATGGAAAAGCATGACCAACGATATCTTGTTGTTCCTGTAAAGCGGAGAATATGCATCTAATTCTTTGTATTTATCTGAGAGCAACTTGTGATATTTTTATCAGAGAAATAGAATGAATGTGATATAGAGGGGACTAATGTGACAATCTGTGTCGACGTTTTGAGTAGGTAATACACAATCTGTGTTGGTTACTTTGATTC-TTTTTTTCTTAAACGGAAGTTTTGTTTGAATTTTGATCATTGTTTGGGACAAATATAAATAGGATGTTATCAATCCGAAATGTGATATAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E392793" ref_strand="+" ref_description="SGN-E392793 [TUS-36-N12]">
      <seq>cttctgttaagttacaattttcaagtcagctactttagtttttgatcaaatctggcttaatcttctcaaggttgtttcttccaattttccaggttagctacttcttcaattctccgtctaacatttttttttttgaatgttgtctgatccgtgtctatctattttgggagagctagctcagatacgagggaaacattcctatattccttactgccatctttatatgtaaaaggatatctttcttgacgtttggttatgataaatatatttctctaagttcttttgttgcaatttttgcattgaaatcaatcttctcttaggagttggaattggaagtgaccaagcatatgcgactcataccctatcgctctgctaagtagggctcttaacaaaaggaaggtaaaatcgatattggttgtcaattagaacagcaagtccaaacttttattgttttaggtatattggctccctgacagtaccacaggatgttatctggaatattaatagaaaggaaattaactattaaggccaatttttgttaatgaaaatgaaatatgcaaccatttccatttgaagtaaattttgctttttagttttacaggtgaaagccaaatgaaactgatcccagatgctgttcatgacgcgagttgctgccaatttgtaagtgttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="14868" stop="13604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14577" g_stop="13904" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E392793" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14577" e_stop="13904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATTGCAGTTACAATTTTCAAGTCAGCTACTTTAGTTTTTGATCAAATCTGGCTTAATCTTCTCAAGGTTGTTTCTTCCAATTTTCCAGGTTAGCTACTTCTTCAATTCTCCGTCTAACA-TTTTTTTTTTGAATGTTGTCTGATCCGTGTCTATCTATTTTGGGAGAGCTAGCTCAGATACGAGGGAAACATTCCTATATTCCTTACTGCCATCTTTATATGTAAAAGGATATCTTTCTTGACGTTTGGTTATGATAAATATATTTCTCTAAGTTCTTTTGTTGCAATTTTTGCATTGAAATCAATCTTCTCTTAGGAGTTGGAATTGGAAGTGACCAAGCATATGCGACTCATACCCTATCGCTCTGCTAAGTAGGGCTCTTAACAAAAGGAAGGTAAAATCGATATTGGTTGTCAATTAGAACAGCAAGTCCAAACTTTTATTGTTTTAGGTATATTGGCTCCCTGACAGTACCACAGGATGTTATCTGGAATATTAATAGAAAGGAAATTAACTATTAAGGCCAATTTTTGTTAATGAAAATGAAATATGCAACCATTTCCATTTGAAGTAAATTTTGCTTTTTAGTTTTACAGGTGAAAGCCAAATGAAACTGATCCCAGATGCTGTTCATGACGCGAGTTGCTGCCAAATTTGTAAGTGTTTTTTT</genome_strand>
        <mrna_strand>CTTCTGTTAAGTTACAATTTTCAAGTCAGCTACTTTAGTTTTTGATCAAATCTGGCTTAATCTTCTCAAGGTTGTTTCTTCCAATTTTCCAGGTTAGCTACTTCTTCAATTCTCCGTCTAACATTTTTTTTTTTGAATGTTGTCTGATCCGTGTCTATCTATTTTGGGAGAGCTAGCTCAGATACGAGGGAAACATTCCTATATTCCTTACTGCCATCTTTATATGTAAAAGGATATCTTTCTTGACGTTTGGTTATGATAAATATATTTCTCTAAGTTCTTTTGTTGCAATTTTTGCATTGAAATCAATCTTCTCTTAGGAGTTGGAATTGGAAGTGACCAAGCATATGCGACTCATACCCTATCGCTCTGCTAAGTAGGGCTCTTAACAAAAGGAAGGTAAAATCGATATTGGTTGTCAATTAGAACAGCAAGTCCAAACTTTTATTGTTTTAGGTATATTGGCTCCCTGACAGTACCACAGGATGTTATCTGGAATATTAATAGAAAGGAAATTAACTATTAAGGCCAATTTTTGTTAATGAAAATGAAATATGCAACCATTTCCATTTGAAGTAAATTTTGCTTTTTAGTTTTACAGGTGAAAGCCAAATGAAACTGATCCCAGATGCTGTTCATGACGCGAGTTGCTGCC-AATTTGTAAGTGTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E241488" ref_strand="+" ref_description="SGN-E241488 [cLED-28-D19]">
      <seq>ttctgttaagttacaattttcaagtcagctactttagtttttgatcaaatctggcttaatcttctcaaggttgtttcttccaattttccaggttagctacttcttcaattctccgtctaacatttttttttttgaatgttgtctgatccgtgtctatctattttgggagagctagctcagatacgagggaaacattcctatattccttactgccatctttatatgtaaaaggatatctttcttgacgtttggttatgataaatatatttctctaagttcttttgttgcaatttttgcattgaaatcaatcttctcttaggagttggaattggaagtgaccaagcatatgcgactcataccctatcgctctgctaagtagggctcttaacaaaaggaaggtaaaatcgatattggttgtcaattaaaacagcaagtccaaacttttattgttttaggtatattggctccctgacagtaccacaggatgttatctggaatattaatagaaaggaaattaactattaaggcccatttttgttaatgaaaatgaaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="14868" stop="13722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14576" g_stop="14022" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E241488" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14576" e_stop="14022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTGCAGTTACAATTTTCAAGTCAGCTACTTTAGTTTTTGATCAAATCTGGCTTAATCTTCTCAAGGTTGTTTCTTCCAATTTTCCAGGTTAGCTACTTCTTCAATTCTCCGTCTAACA-TTTTTTTTTTGAATGTTGTCTGATCCGTGTCTATCTATTTTGGGAGAGCTAGCTCAGATACGAGGGAAACATTCCTATATTCCTTACTGCCATCTTTATATGTAAAAGGATATCTTTCTTGACGTTTGGTTATGATAAATATATTTCTCTAAGTTCTTTTGTTGCAATTTTTGCATTGAAATCAATCTTCTCTTAGGAGTTGGAATTGGAAGTGACCAAGCATATGCGACTCATACCCTATCGCTCTGCTAAGTAGGGCTCTTAACAAAAGGAAGGTAAAATCGATATTGGTTGTCAATTAGAACAGCAAGTCCAAACTTTTATTGTTTTAGGTATATTGGCTCCCTGACAGTACCACAGGATGTTATCTGGAATATTAATAGAAAGGAAATTAACTATTAAGGCCAATTTTTGTTAATGAAAATGAAATATG</genome_strand>
        <mrna_strand>TTCTGTTAAGTTACAATTTTCAAGTCAGCTACTTTAGTTTTTGATCAAATCTGGCTTAATCTTCTCAAGGTTGTTTCTTCCAATTTTCCAGGTTAGCTACTTCTTCAATTCTCCGTCTAACATTTTTTTTTTTGAATGTTGTCTGATCCGTGTCTATCTATTTTGGGAGAGCTAGCTCAGATACGAGGGAAACATTCCTATATTCCTTACTGCCATCTTTATATGTAAAAGGATATCTTTCTTGACGTTTGGTTATGATAAATATATTTCTCTAAGTTCTTTTGTTGCAATTTTTGCATTGAAATCAATCTTCTCTTAGGAGTTGGAATTGGAAGTGACCAAGCATATGCGACTCATACCCTATCGCTCTGCTAAGTAGGGCTCTTAACAAAAGGAAGGTAAAATCGATATTGGTTGTCAATTAAAACAGCAAGTCCAAACTTTTATTGTTTTAGGTATATTGGCTCCCTGACAGTACCACAGGATGTTATCTGGAATATTAATAGAAAGGAAATTAACTATTAAGGCCCATTTTTGTTAATGAAAATGAAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E377326" ref_strand="+" ref_description="SGN-E377326 [TUS-21-A18]">
      <seq>ttctgttaagatacaattttcaagtcagctactttactttttgatcaaatctggcttaatcttctcaaggttgtttcttccaattttccaggttagctacttcttcaattctccgtctaacatttttttttttgaatgttgtctgatccgtgtctatctattttgggagagctagctcagatacgagggaaacattcctatattccttactgccatctttatatgtaaaaggatatctttcttgacgtttggttatgataaatatatttctctaagttcttttgttgcaatttttgcattgaaatcaatcttctcttaggagttggaattggaagtgaccaagcatatgcgactcataccctatcgctctgctaagtaaggctcttaacaaaaggaaggtaaaatcgatattggttgtcaattacaacagcaagtccaaacttttattgttttaggtatattggctccctgacagtaccacaggatgttatctggaatattaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="14868" stop="13773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14576" g_stop="14073" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E377326" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14576" e_stop="14073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTGCAGTTACAATTTTCAAGTCAGCTACTTTAGTTTTTGATCAAATCTGGCTTAATCTTCTCAAGGTTGTTTCTTCCAATTTTCCAGGTTAGCTACTTCTTCAATTCTCCGTCTAACA-TTTTTTTTTTGAATGTTGTCTGATCCGTGTCTATCTATTTTGGGAGAGCTAGCTCAGATACGAGGGAAACATTCCTATATTCCTTACTGCCATCTTTATATGTAAAAGGATATCTTTCTTGACGTTTGGTTATGATAAATATATTTCTCTAAGTTCTTTTGTTGCAATTTTTGCATTGAAATCAATCTTCTCTTAGGAGTTGGAATTGGAAGTGACCAAGCATATGCGACTCATACCCTATCGCTCTGCTAAGTAGGGCTCTTAACAAAAGGAAGGTAAAATCGATATTGGTTGTCAATTAGAACAGCAAGTCCAAACTTTTATTGTTTTAGGTATATTGGCTCCCTGACAGTACCACAGGATGTTATCTGGAATATTAATA</genome_strand>
        <mrna_strand>TTCTGTTAAGATACAATTTTCAAGTCAGCTACTTTACTTTTTGATCAAATCTGGCTTAATCTTCTCAAGGTTGTTTCTTCCAATTTTCCAGGTTAGCTACTTCTTCAATTCTCCGTCTAACATTTTTTTTTTTGAATGTTGTCTGATCCGTGTCTATCTATTTTGGGAGAGCTAGCTCAGATACGAGGGAAACATTCCTATATTCCTTACTGCCATCTTTATATGTAAAAGGATATCTTTCTTGACGTTTGGTTATGATAAATATATTTCTCTAAGTTCTTTTGTTGCAATTTTTGCATTGAAATCAATCTTCTCTTAGGAGTTGGAATTGGAAGTGACCAAGCATATGCGACTCATACCCTATCGCTCTGCTAAGTAAGGCTCTTAACAAAAGGAAGGTAAAATCGATATTGGTTGTCAATTACAACAGCAAGTCCAAACTTTTATTGTTTTAGGTATATTGGCTCCCTGACAGTACCACAGGATGTTATCTGGAATATTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E231937" ref_strand="+" ref_description="SGN-E231937 [cLED-7-L8]">
      <seq>ttctgttaagttacaattttcaagtcagctactttagtttttgatcaaatctggcttaatcttctgaaggttgtttcttccaattttccaggttagctacttcttcaattctccgtctaacatttttttttttgaatgttgtctgatccgcgtctatctattttgggagagctagctcagatacgagggaaacattcctatattccttactgccatctttatatgtaaaaggatatctttcttgacgtttggttatgataaatatatttctctaagttcttttgttgcaatttttgcattgaaatcaatcttctcttaggagttggaattggaagtgaccaagcatatgcgactcataccctatcgctctgctaagtagggctcttaacaaaaggaaggtaaaatcgatattggttgtcaattagaacagcaagtccaaacttttattgttttaggtatattggctccctgacagtaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="14868" stop="13797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14576" g_stop="14097" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E231937" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14576" e_stop="14097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTGCAGTTACAATTTTCAAGTCAGCTACTTTAGTTTTTGATCAAATCTGGCTTAATCTTCTCAAGGTTGTTTCTTCCAATTTTCCAGGTTAGCTACTTCTTCAATTCTCCGTCTAACA-TTTTTTTTTTGAATGTTGTCTGATCCGTGTCTATCTATTTTGGGAGAGCTAGCTCAGATACGAGGGAAACATTCCTATATTCCTTACTGCCATCTTTATATGTAAAAGGATATCTTTCTTGACGTTTGGTTATGATAAATATATTTCTCTAAGTTCTTTTGTTGCAATTTTTGCATTGAAATCAATCTTCTCTTAGGAGTTGGAATTGGAAGTGACCAAGCATATGCGACTCATACCCTATCGCTCTGCTAAGTAGGGCTCTTAACAAAAGGAAGGTAAAATCGATATTGGTTGTCAATTAGAACAGCAAGTCCAAACTTTTATTGTTTTAGGTATATTGGCTCCCTGACAGTACCAC</genome_strand>
        <mrna_strand>TTCTGTTAAGTTACAATTTTCAAGTCAGCTACTTTAGTTTTTGATCAAATCTGGCTTAATCTTCTGAAGGTTGTTTCTTCCAATTTTCCAGGTTAGCTACTTCTTCAATTCTCCGTCTAACATTTTTTTTTTTGAATGTTGTCTGATCCGCGTCTATCTATTTTGGGAGAGCTAGCTCAGATACGAGGGAAACATTCCTATATTCCTTACTGCCATCTTTATATGTAAAAGGATATCTTTCTTGACGTTTGGTTATGATAAATATATTTCTCTAAGTTCTTTTGTTGCAATTTTTGCATTGAAATCAATCTTCTCTTAGGAGTTGGAATTGGAAGTGACCAAGCATATGCGACTCATACCCTATCGCTCTGCTAAGTAGGGCTCTTAACAAAAGGAAGGTAAAATCGATATTGGTTGTCAATTAGAACAGCAAGTCCAAACTTTTATTGTTTTAGGTATATTGGCTCCCTGACAGTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E332589" ref_strand="+" ref_description="SGN-E332589 [cTOD-18-I18]">
      <seq>ttaatttgcagaaattcagctccagtgaagagatccgtcgccggtgagaaatgtcggattatttgcctcaagaattattggttgatatcttcacaaaactaccagtcaaatcaatcctccgatgcagaagtgtttgcaagtcatggtattctcttcttactagccctagctttaccttcacacatctcaatcgaaaacgagatgatcatatgctgattaggaattatggtagaagcactcgattagatatgtatcctttgtttggtaacaatgagaggttggatcccgaccatttcttagatttttcatttcgtagaggttccgttagtatagtgggtagtgttaatggtattttgtgcctcgccgacaccgacaccgacgccgacaccgacaccgacgccgacgccgataccgatgccgacgccgactccgccatcttgacccatttatatttttgtaacctatccatcagaaagtcggtaaaactccctgaaccagttcgtagtacctatcgtttcacactggggtttgggtttgattcggttactaatgactacaaggtggtaagagtagtacacgctatgggacaatcaaagccacatgctgatctttataagttaagtactggtgtttgggaagacatttccaatgtccctgagccttacatattaattttcattgagccacagggcccacaggtgtatgtgaacggcgcttgtcattggatactactaaattggagttacaccagctcggaggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="-" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="23773" stop="22410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23473" g_stop="22710" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="762" r_length="762" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="-" ref_id="SGN-E332589" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23473" e_stop="22710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTTGCAGAAATTCAGCTCCAGTGAAGAGATCCGTCGCCGGTGAGAAATGTCGGATTATTTGCCTCAAGAATTATTGGTTGATATCTTCACAAAACTACCAGTCAAATCAATCCTCCGATGCAGAAGTGTTTGCAAGTCATGGTATTCTCTTCTTACTAGCCCTAGCTTTACCTTCACACATCTCAATCGAAAACGAGATGATCATATGCTGATTAGGAATTATGGTAGAAGCACTCGATTAGATATGTATCCTTTGTTTGGTAACAATGAGAGGTTGGATCCCGACCATTTCTTAGATTTTTCATTTCGTAGAGGTTCCGTTAGTATAGTGGGTAGTGTTAATGGTATTTTGTGCCTCGCCGACACCGACACCGACGCCGACACCGACACCGACGCCGACGCCGATACCGATGCCGACGCCGACTCCGCCATCTTGACCCATTTATATTTTTGTAACCTATCCATCAGAAAGTCGGTAAAACTCCCTGAACCAGTTCGTAGTACCTATCGTTTCACACTGGGGTTTGGGTTTGATTCGGTTACTAATGACTACAAGGTGGTAAGAGTAGTACACGCTATGGGACAATCAAAGCCACATGCTGATCTTTATAAGTTAAGTACTGGTGTTTGGGAAGACATTTCCAATGTCCCTGAGCCTTACATATTAATTTCCATTGAGCCACAGGGCCCACAGGTGTATGTGAACGGCGCTTGTCATTGGATTACTACTAAATTGGAGTTTACACCAGCTCGGAGGAAT</genome_strand>
        <mrna_strand>TTAATTTGCAGAAATTCAGCTCCAGTGAAGAGATCCGTCGCCGGTGAGAAATGTCGGATTATTTGCCTCAAGAATTATTGGTTGATATCTTCACAAAACTACCAGTCAAATCAATCCTCCGATGCAGAAGTGTTTGCAAGTCATGGTATTCTCTTCTTACTAGCCCTAGCTTTACCTTCACACATCTCAATCGAAAACGAGATGATCATATGCTGATTAGGAATTATGGTAGAAGCACTCGATTAGATATGTATCCTTTGTTTGGTAACAATGAGAGGTTGGATCCCGACCATTTCTTAGATTTTTCATTTCGTAGAGGTTCCGTTAGTATAGTGGGTAGTGTTAATGGTATTTTGTGCCTCGCCGACACCGACACCGACGCCGACACCGACACCGACGCCGACGCCGATACCGATGCCGACGCCGACTCCGCCATCTTGACCCATTTATATTTTTGTAACCTATCCATCAGAAAGTCGGTAAAACTCCCTGAACCAGTTCGTAGTACCTATCGTTTCACACTGGGGTTTGGGTTTGATTCGGTTACTAATGACTACAAGGTGGTAAGAGTAGTACACGCTATGGGACAATCAAAGCCACATGCTGATCTTTATAAGTTAAGTACTGGTGTTTGGGAAGACATTTCCAATGTCCCTGAGCCTTACATATTAATTTTCATTGAGCCACAGGGCCCACAGGTGTATGTGAACGGCGCTTGTCATTGGA-TACTACTAAATTGGAG-TTACACCAGCTCGGAGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7du8xM/sgn_ests_tomato_potato" ref_id="SGN-E711490" ref_strand="+" ref_description="SGN-E711490 [FB02AF03]">
      <seq>ggacgaggccagttaaatttctaaagttcattagcaagagcttgaagatgacctcgatgacagagatgagagtacacatggattgtgccggatgtgagagcaaggtcagaaaatctctcgagaaagttaaaggtgttgataatgtagaaatagatatgtctatgcaaaaggtgacagtaacaggatgggctgatcaaaagaaaatactcaaaacagttagaagaactggtaaaagagctgaaatatggcaatttcctcataatcctgagatgagaaataaccctacttatgtaaccgatcattattatcaacaacaaggctgcagtggtccgaccacttattatgccggagaaccaccggcttcctcctataactatcgcaaacacggctacgataactatggccgtgcctatagtctttacaggggcaattcaaacacatttggtagtcgtgttggtgatgcttttagtgatgagaatcctcgtggttgtaatattatgtaattgttgtttgatgttgtcgattattaaatgtaagagcctgtttgaattgacttcgttaaaaaaatgtataatacataaatatgactttaatttgacgtcagttgataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-LtJMu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0076O09.2" temp_strand="+" temp_description="C07HBa0076O09.2  AC212625.2 htgs_phase:2 submitted_to_sgn_as:gi|167860208|gb|AC212625.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="33286" stop="35054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33572" g_stop="33628" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.789"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33629" i_stop="33751" i_length="123">
            <donor d_prob="1.000" d_score="0.82"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33752" g_stop="33827" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="132" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33828" i_stop="34275" i_length="448">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34276" g_stop="34754" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="611" r_length="479" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="612" polyA_stop="622"/>
      <MATCH_line gen_id="C07HBa0076O09.2" gen_strand="+" ref_id="SGN-E711490" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33572" e_stop="33628"/>
          <exon e_start="33752" e_stop="33827"/>
          <exon e_start="34276" e_stop="34754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCAGAAAAAGAAACATTTCTAAAGTTCATTAGCAAGAGCTTGAAGATGACAACGGTAATCACTATCTCCTCTATCTTTAATTTTTCTCTATAATTTTTATATAATTCGATCGTAATATAAGGAAAGATTTTGAACCAATTTTATATGCCTTAATACGCACTATGTTTTGGTTTACAGATGACAGAGATGAGAGTACACATGGATTGTGCCGGATGTGAGAGCAAGGTCAGAAAATCTCTCGAGAAAGTTAAAGGTAATATACTTATAAGTTACATCACTGGCGGACACTGTTTCGCTGAAAAATTACTTATAGTGGTTAAATTTTAGTTTTATAAATATAAATATATAAATTGACACATTTTGAATTAAAGGGTTGATCTATTGATTAGGAGCTTAGAAACACTATATGAGATCGTGTGTTTGCCCTACTAGCCTATTTATTTATAATTTTTTTACTATAACCTTTGACACCTCTTAATAAATTTTTTTACTTTGATTCTTAACATTCCTTAATGAAAATTCTGTGTCCGTCACTATGCACTAATACACAATAGATTCGAGCTCAAAAAAACTTCTATCTGCTCTGAGATTCGATCTCAAAAAAACTTCTATCTGCTTTGATCTTGTTGTCTGACCATCTCATCTAAAAGTTTAAGCTGTTAGAGATATATTGTGAACATAATTTTTGACGTCAAATTCAGGTGTTGATAATGTAGAAATAGATATGTCTATGCAAAAGGTGACAGTAACAGGATGGGCTGATCAAAAGAAAATACTCAAAACAGTTAGAAGAACTGGTAAAAGAGCTGAAATATGGCAATTTCCTCATAATCCTGAGATGAGAAATAACCCTACTTATGTAACCGATCATTATTATCAACAACAAGGCTGCAGTGGTCCGACCACTTATTATGCCGGAGAACCACCGGCTTCCTCCTATAACTATCGCAAACACGGCTACGATAACTATGGCCGTGCCTATAGTCTTTACAGGGGCAATTCAAACACATTTGGTAGTCGTGTTGGTGATGCTTTTAGTGATGAGAATCCTCGTGGTTGTAATATTATGTAATTGTTGTTTGATGTTGTCGATTATTAAATGTAAGAGCCTGTTTGAATTGACTTCTTTAAAAAAATGTATAATACATAAATATGACTTTAATTTGACGTCAGTTGATAA</genome_strand>
        <mrna_strand>GGACGAG-GCCAGTTAAATTTCTAAAGTTCATTAGCAAGAGCTTGAAGATGACCTCG...........................................................................................................................ATGACAGAGATGAGAGTACACATGGATTGTGCCGGATGTGAGAGCAAGGTCAGAAAATCTCTCGAGAAAGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGATAATGTAGAAATAGATATGTCTATGCAAAAGGTGACAGTAACAGGATGGGCTGATCAAAAGAAAATACTCAAAACAGTTAGAAGAACTGGTAAAAGAGCTGAAATATGGCAATTTCCTCATAATCCTGAGATGAGAAATAACCCTACTTATGTAACCGATCATTATTATCAACAACAAGGCTGCAGTGGTCCGACCACTTATTATGCCGGAGAACCACCGGCTTCCTCCTATAACTATCGCAAACACGGCTACGATAACTATGGCCGTGCCTATAGTCTTTACAGGGGCAATTCAAACACATTTGGTAGTCGTGTTGGTGATGCTTTTAGTGATGAGAATCCTCGTGGTTGTAATATTATGTAATTGTTGTTTGATGTTGTCGATTATTAAATGTAAGAGCCTGTTTGAATTGACTTCGTTAAAAAAATGTATAATACATAAATATGACTTTAATTTGACGTCAGTTGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>80</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1" PGL_stop="2312"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1" e_stop="534"/>
            <exon e_start="817" e_stop="1203"/>
            <exon e_start="1292" e_stop="1754"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.891" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1" e_stop="534" e_length="534"/>
          </exon>
          <intron i_serial="1" don_prob="0.891" acc_prob="0.999">
            <gDNA_intron_boundary i_start="535" i_stop="816" i_length="282"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="817" e_stop="1203" e_length="387"/>
          </exon>
          <intron i_serial="2" don_prob="0.957" acc_prob="0.987">
            <gDNA_intron_boundary i_start="1204" i_stop="1291" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="0.907">
            <gDNA_exon_boundary e_start="1292" e_stop="1754" e_length="463"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="534"/>
              <exon start="817" stop="931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80" stop="534"/>
              <exon start="817" stop="1203"/>
              <exon start="1292" stop="1358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86" stop="418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126" stop="534"/>
              <exon start="817" stop="931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137" stop="471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="182" stop="534"/>
              <exon start="817" stop="1040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="206" stop="534"/>
              <exon start="817" stop="1136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="274" stop="534"/>
              <exon start="817" stop="1132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="305" stop="534"/>
              <exon start="817" stop="1164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="316" stop="534"/>
              <exon start="817" stop="1164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="326" stop="534"/>
              <exon start="817" stop="1203"/>
              <exon start="1292" stop="1373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="347" stop="534"/>
              <exon start="817" stop="1203"/>
              <exon start="1292" stop="1694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="430" stop="534"/>
              <exon start="817" stop="1203"/>
              <exon start="1292" stop="1530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="450" stop="534"/>
              <exon start="817" stop="1199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="872" stop="1203"/>
              <exon start="1292" stop="1583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="889" stop="1203"/>
              <exon start="1292" stop="1709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="889" stop="1203"/>
              <exon start="1292" stop="1707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="889" stop="1203"/>
              <exon start="1292" stop="1704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="984" stop="1203"/>
              <exon start="1292" stop="1687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1015" stop="1203"/>
              <exon start="1292" stop="1574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1042" stop="1203"/>
              <exon start="1292" stop="1754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1049" stop="1203"/>
              <exon start="1292" stop="1614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1049" stop="1203"/>
              <exon start="1292" stop="1475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1164" stop="1203"/>
              <exon start="1292" stop="1715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221623" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1200" stop="1203"/>
              <exon start="1292" stop="1439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1331" stop="1697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1373" stop="1691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234407" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGCTTGCTGATCTCGAGTCTGCACCTGCTTCTGTTGCTCGGTTGTTCTCCATAGATTGGTACAGAAACCGTATCAATGGGAAACAAGAAGTTATGATTGGGTATTCTGATTCCGGTAAGGATGCTGGCCGACTATCTGCAGCTTGGCAATTGTACAAGGCTCAAGAGGAACTTGTAAAGGTGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTT : GCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAG : GTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGGATTTGAGTGTGTGATTTTTGATTCATACGTTCTTGAATATTATACATGGAGTAATTTAAAAAA</gDNA_template>
            <first_frame> K  L  A  D  L  E  S  A  P  A  S  V  A  R  L  F  S  I  D  W  Y  R  N  R  I  N  G  K  Q  E  V  M  I  G  Y  S  D  S  G  K  D  A  G  R  L  S  A  A  W  Q  L  Y  K  A  Q  E  E  L  V  K  V  A  K  E  F  G  V  K  L  T  M  F  H  G  R  G  G  T  V  G  R  G  G  G  P  T  H  L  A  I  L  S  Q  P  P  D  T  I  H  G  S  L  R  V  T  V  Q  G  E  V  I  E  Q  S  F  G  E  E  H  L  C  F  R  T  L  Q  R  F  T  A  A  T  L  E  H  G  M  N  P  P  V  A  P  N  P  E  W  R  A  L  L  D  E  M  S  V  V  A  T  K  E  Y  R  S  L  V  F  Q  D  P  R  F  V  E  Y  F  R  L  :  A  T  P  E  L  E  Y  G  R  M  N  I  G  S  R  P  A  K  R  K  P  S  G  G  I  E  S  L  R  A  I  P  W  I  F  A  W  T  Q  T  R  F  H  L  P  V  W  L  G  F  G  A  A  F  K  H  V  I  E  K  D  I  R  N  L  Q  M  L  K  D  M  Y  N  G  W  P  F  F  R  V  T  L  D  L  L  E  M  V  F  A  K  G  D  P  G  I  A  A  L  Y  D  K  L  L  V  S  E  D  L  W  P  L  G  E  R  L  R  S  K  Y  E  E  T  K  G  F  L  L  Q  :  V  A  G  H  K  D  L  L  E  G  D  P  Y  L  R  Q  R  L  K  L  R  D  S  Y  I  T  T  L  N  V  S  Q  A  Y  T  L  K  R  I  R  D  P  N  Y  N  V  K  V  R  P  H  L  D  K  E  I  M  E  S  S  K  P  A  A  E  L  V  K  L  N  P  T  S  E  Y  A  P  G  L  E  D  T  L  I  L  T  M  K  G  I  A  A  G  M  Q  N  T  G  *  G  *  G  Y  Y  V  C  I  I  I  S  D  I  V  F  Q  L  L  *  I  L  C  L  F  K  N  N  N  D  E  M  F  L  K  D  L  S  V  *  F  L  I  H  T  F  L  N  I  I  H  G  V  I  *  K  </first_frame>
            <second_frame>  S  L  L  I  S  S  L  H  L  L  L  L  L  G  C  S  P  *  I  G  T  E  T  V  S  M  G  N  K  K  L  *  L  G  I  L  I  P  V  R  M  L  A  D  Y  L  Q  L  G  N  C  T  R  L  K  R  N  L  *  R  W  Q  K  N  L  E  *  S  *  Q  C  S  M  A  E  V  G  L  *  E  G  E  G  V  P  P  T  L  L  F  Y  H  N  P  Q  T  Q  F  M  A  H  F  V  *  L  F  K  V  K  L  L  N  S  H  L  G  R  N  T  C  A  L  E  L  F  S  V  S  Q  Q  L  H  L  S  M  E  *  T  P  L  W  L  L  I  Q  S  G  V  P  S  W  M  R  C  L  L  L  L  R  K  S  I  G  L  *  C  S  R  I  H  D  L  L  N  T  S  A  L :   Q  P  Q  N  *  N  M  V  A  *  T  L  E  V  A  Q  P  K  G  S  Q  V  V  G  L  N  L  F  E  L  F  H  G  S  L  H  G  L  R  Q  G  F  I  S  Q  S  G  L  A  L  G  L  H  S  S  T  L  L  R  R  I  *  E  I  C  K  C  S  R  I  C  T  M  D  G  L  S  L  E  *  H  L  T  C  S  K  W  S  S  L  R  E  T  L  V  L  L  H  C  M  I  N  F  *  Y  P  K  I  C  G  R  L  E  S  D  *  D  P  N  T  K  K  Q  R  A  F  S  F  R :   L  L  G  T  R  I  Y  W  K  E  I  H  T  *  G  K  G  S  N  F  V  I  L  T  S  R  P  L  T  *  A  K  H  T  H  *  N  E  F  V  T  P  T  T  M  *  R  S  D  L  T  *  T  R  R  S  W  N  Q  A  N  Q  L  L  N  *  *  S  *  I  L  R  A  S  M  R  L  A  W  K  T  P  S  S  *  P  *  K  V  L  L  L  E  C  R  T  L  V  K  A  K  A  I  M  Y  V  *  *  *  V  I  L  S  F  N  F  Y  K  S  Y  V  C  S  R  I  I  M  M  R  C  F  *  R  I  *  V  C  D  F  *  F  I  R  S  *  I  L  Y  M  E  *  F  K  K </second_frame>
            <third_frame>   A  C  *  S  R  V  C  T  C  F  C  C  S  V  V  L  H  R  L  V  Q  K  P  Y  Q  W  E  T  R  S  Y  D  W  V  F  *  F  R  *  G  C  W  P  T  I  C  S  L  A  I  V  Q  G  S  R  G  T  C  K  G  G  K  R  I  W  S  K  A  N  N  V  P  W  P  R  W  D  C  R  K  G  R  G  S  H  P  P  C  Y  F  I  T  T  P  R  H  N  S  W  L  T  S  C  D  C  S  R  *  S  Y  *  T  V  I  W  G  G  T  P  V  L  *  N  S  S  A  F  H  S  S  Y  T  *  A  W  N  E  P  P  C  G  S  *  S  R  V  A  C  P  L  G  *  D  V  C  C  C  Y  E  R  V  S  V  F  S  V  P  G  S  T  I  C  *  I  L  P  P   : C  N  P  R  I  R  I  W  S  H  E  H  W  K  S  P  S  Q  K  E  A  K  W  W  D  *  I  S  S  S  Y  S  M  D  L  C  M  D  S  D  K  V  S  S  P  S  L  A  W  L  W  G  C  I  Q  A  R  Y  *  E  G  Y  K  K  S  A  N  A  Q  G  Y  V  Q  W  M  A  F  L  *  S  D  T  *  L  A  R  N  G  L  R  *  G  R  P  W  Y  C  C  I  V  *  *  T  F  S  I  R  R  S  V  A  A  W  R  A  I  E  I  Q  I  R  R  N  K  G  L  S  P  S   : G  C  W  A  Q  G  S  I  G  R  R  S  I  L  E  A  K  A  Q  T  S  *  F  L  H  H  D  P  *  R  K  P  S  I  H  I  E  T  N  S  *  P  Q  L  Q  C  E  G  Q  T  S  P  R  Q  G  D  H  G  I  K  Q  T  S  C  *  I  S  E  A  E  S  Y  E  R  V  C  A  W  L  G  R  H  P  H  L  D  H  E  R  Y  C  C  W  N  A  E  H  W  L  R  L  R  L  L  C  M  Y  N  N  K  *  Y  C  L  S  T  F  I  N  P  M  S  V  Q  E  *  *  *  *  D  V  S  E  G  F  E  C  V  I  F  D  S  Y  V  L  E  Y  Y  T  W  S  N  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0076O09.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1" stop="534"/>
                    <exon start="817" stop="1203"/>
                    <exon start="1292" stop="1588"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1215</number_coding_nucleotides>
                  <number_encoded_amino_acids>405</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLADLESAPASVARLFSIDWYRNRINGKQEVMIGYSDSGKDAGRLSAAWQLYKAQEELVKVAKEFGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMNPPVAPNPEWRALLDEMSVVATKEYRSLVFQDPRFVEYFRLATPELEYGRMNIGSRPAKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIEKDIRNLQMLKDMYNGWPFFRVTLDLLEMVFAKGDPGIAALYDKLLVSEDLWPLGERLRSKYEETKGFLLQVAGHKDLLEGDPYLRQRLKLRDSYITTLNVSQAYTLKRIRDPNYNVKVRPHLDKEIMESSKPAAELVKLNPTSEYAPGLEDTLILTMKGIAAGMQNTG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="1" e_stop="534"/>
            <exon e_start="817" e_stop="1203"/>
            <exon e_start="1292" e_stop="1712"/>
            <exon e_start="2298" e_stop="2312"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.891" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.736" e_score="1.000"/>
          <exon-only e_score="0.533"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1" e_stop="534" e_length="534"/>
          </exon>
          <intron i_serial="1" don_prob="0.891" acc_prob="0.999">
            <gDNA_intron_boundary i_start="535" i_stop="816" i_length="282"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="817" e_stop="1203" e_length="387"/>
          </exon>
          <intron i_serial="2" don_prob="0.957" acc_prob="0.987">
            <gDNA_intron_boundary i_start="1204" i_stop="1291" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1292" e_stop="1712" e_length="421"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.736">
            <gDNA_intron_boundary i_start="1713" i_stop="2297" i_length="585"/>
          </intron>
          <exon e_serial="4" e_score="0.533">
            <gDNA_exon_boundary e_start="2298" e_stop="2312" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="534"/>
              <exon start="817" stop="931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80" stop="534"/>
              <exon start="817" stop="1203"/>
              <exon start="1292" stop="1358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86" stop="418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126" stop="534"/>
              <exon start="817" stop="931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137" stop="471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="182" stop="534"/>
              <exon start="817" stop="1040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="206" stop="534"/>
              <exon start="817" stop="1136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="274" stop="534"/>
              <exon start="817" stop="1132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="305" stop="534"/>
              <exon start="817" stop="1164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="316" stop="534"/>
              <exon start="817" stop="1164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="326" stop="534"/>
              <exon start="817" stop="1203"/>
              <exon start="1292" stop="1373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="347" stop="534"/>
              <exon start="817" stop="1203"/>
              <exon start="1292" stop="1694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="430" stop="534"/>
              <exon start="817" stop="1203"/>
              <exon start="1292" stop="1530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="450" stop="534"/>
              <exon start="817" stop="1199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="872" stop="1203"/>
              <exon start="1292" stop="1583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="889" stop="1203"/>
              <exon start="1292" stop="1709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="889" stop="1203"/>
              <exon start="1292" stop="1707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="889" stop="1203"/>
              <exon start="1292" stop="1704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="916" stop="1203"/>
              <exon start="1292" stop="1712"/>
              <exon start="2298" stop="2312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="984" stop="1203"/>
              <exon start="1292" stop="1687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1015" stop="1203"/>
              <exon start="1292" stop="1574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1049" stop="1203"/>
              <exon start="1292" stop="1614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1049" stop="1203"/>
              <exon start="1292" stop="1475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1200" stop="1203"/>
              <exon start="1292" stop="1439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1331" stop="1697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1373" stop="1691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234407" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGCTTGCTGATCTCGAGTCTGCACCTGCTTCTGTTGCTCGGTTGTTCTCCATAGATTGGTACAGAAACCGTATCAATGGGAAACAAGAAGTTATGATTGGGTATTCTGATTCCGGTAAGGATGCTGGCCGACTATCTGCAGCTTGGCAATTGTACAAGGCTCAAGAGGAACTTGTAAAGGTGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTT : GCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAG : GTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGGATTTGAGTGTGTGATTTTTGA : AAAGTGGCACAAAAT</gDNA_template>
            <first_frame> K  L  A  D  L  E  S  A  P  A  S  V  A  R  L  F  S  I  D  W  Y  R  N  R  I  N  G  K  Q  E  V  M  I  G  Y  S  D  S  G  K  D  A  G  R  L  S  A  A  W  Q  L  Y  K  A  Q  E  E  L  V  K  V  A  K  E  F  G  V  K  L  T  M  F  H  G  R  G  G  T  V  G  R  G  G  G  P  T  H  L  A  I  L  S  Q  P  P  D  T  I  H  G  S  L  R  V  T  V  Q  G  E  V  I  E  Q  S  F  G  E  E  H  L  C  F  R  T  L  Q  R  F  T  A  A  T  L  E  H  G  M  N  P  P  V  A  P  N  P  E  W  R  A  L  L  D  E  M  S  V  V  A  T  K  E  Y  R  S  L  V  F  Q  D  P  R  F  V  E  Y  F  R  L  :  A  T  P  E  L  E  Y  G  R  M  N  I  G  S  R  P  A  K  R  K  P  S  G  G  I  E  S  L  R  A  I  P  W  I  F  A  W  T  Q  T  R  F  H  L  P  V  W  L  G  F  G  A  A  F  K  H  V  I  E  K  D  I  R  N  L  Q  M  L  K  D  M  Y  N  G  W  P  F  F  R  V  T  L  D  L  L  E  M  V  F  A  K  G  D  P  G  I  A  A  L  Y  D  K  L  L  V  S  E  D  L  W  P  L  G  E  R  L  R  S  K  Y  E  E  T  K  G  F  L  L  Q  :  V  A  G  H  K  D  L  L  E  G  D  P  Y  L  R  Q  R  L  K  L  R  D  S  Y  I  T  T  L  N  V  S  Q  A  Y  T  L  K  R  I  R  D  P  N  Y  N  V  K  V  R  P  H  L  D  K  E  I  M  E  S  S  K  P  A  A  E  L  V  K  L  N  P  T  S  E  Y  A  P  G  L  E  D  T  L  I  L  T  M  K  G  I  A  A  G  M  Q  N  T  G  *  G  *  G  Y  Y  V  C  I  I  I  S  D  I  V  F  Q  L  L  *  I  L  C  L  F  K  N  N  N  D  E  M  F  L  K  D  L  S  V  *  F  L   : K  S  G  T  K  </first_frame>
            <second_frame>  S  L  L  I  S  S  L  H  L  L  L  L  L  G  C  S  P  *  I  G  T  E  T  V  S  M  G  N  K  K  L  *  L  G  I  L  I  P  V  R  M  L  A  D  Y  L  Q  L  G  N  C  T  R  L  K  R  N  L  *  R  W  Q  K  N  L  E  *  S  *  Q  C  S  M  A  E  V  G  L  *  E  G  E  G  V  P  P  T  L  L  F  Y  H  N  P  Q  T  Q  F  M  A  H  F  V  *  L  F  K  V  K  L  L  N  S  H  L  G  R  N  T  C  A  L  E  L  F  S  V  S  Q  Q  L  H  L  S  M  E  *  T  P  L  W  L  L  I  Q  S  G  V  P  S  W  M  R  C  L  L  L  L  R  K  S  I  G  L  *  C  S  R  I  H  D  L  L  N  T  S  A  L :   Q  P  Q  N  *  N  M  V  A  *  T  L  E  V  A  Q  P  K  G  S  Q  V  V  G  L  N  L  F  E  L  F  H  G  S  L  H  G  L  R  Q  G  F  I  S  Q  S  G  L  A  L  G  L  H  S  S  T  L  L  R  R  I  *  E  I  C  K  C  S  R  I  C  T  M  D  G  L  S  L  E  *  H  L  T  C  S  K  W  S  S  L  R  E  T  L  V  L  L  H  C  M  I  N  F  *  Y  P  K  I  C  G  R  L  E  S  D  *  D  P  N  T  K  K  Q  R  A  F  S  F  R :   L  L  G  T  R  I  Y  W  K  E  I  H  T  *  G  K  G  S  N  F  V  I  L  T  S  R  P  L  T  *  A  K  H  T  H  *  N  E  F  V  T  P  T  T  M  *  R  S  D  L  T  *  T  R  R  S  W  N  Q  A  N  Q  L  L  N  *  *  S  *  I  L  R  A  S  M  R  L  A  W  K  T  P  S  S  *  P  *  K  V  L  L  L  E  C  R  T  L  V  K  A  K  A  I  M  Y  V  *  *  *  V  I  L  S  F  N  F  Y  K  S  Y  V  C  S  R  I  I  M  M  R  C  F  *  R  I  *  V  C  D  F  *  :  K  V  A  Q  N </second_frame>
            <third_frame>   A  C  *  S  R  V  C  T  C  F  C  C  S  V  V  L  H  R  L  V  Q  K  P  Y  Q  W  E  T  R  S  Y  D  W  V  F  *  F  R  *  G  C  W  P  T  I  C  S  L  A  I  V  Q  G  S  R  G  T  C  K  G  G  K  R  I  W  S  K  A  N  N  V  P  W  P  R  W  D  C  R  K  G  R  G  S  H  P  P  C  Y  F  I  T  T  P  R  H  N  S  W  L  T  S  C  D  C  S  R  *  S  Y  *  T  V  I  W  G  G  T  P  V  L  *  N  S  S  A  F  H  S  S  Y  T  *  A  W  N  E  P  P  C  G  S  *  S  R  V  A  C  P  L  G  *  D  V  C  C  C  Y  E  R  V  S  V  F  S  V  P  G  S  T  I  C  *  I  L  P  P   : C  N  P  R  I  R  I  W  S  H  E  H  W  K  S  P  S  Q  K  E  A  K  W  W  D  *  I  S  S  S  Y  S  M  D  L  C  M  D  S  D  K  V  S  S  P  S  L  A  W  L  W  G  C  I  Q  A  R  Y  *  E  G  Y  K  K  S  A  N  A  Q  G  Y  V  Q  W  M  A  F  L  *  S  D  T  *  L  A  R  N  G  L  R  *  G  R  P  W  Y  C  C  I  V  *  *  T  F  S  I  R  R  S  V  A  A  W  R  A  I  E  I  Q  I  R  R  N  K  G  L  S  P  S   : G  C  W  A  Q  G  S  I  G  R  R  S  I  L  E  A  K  A  Q  T  S  *  F  L  H  H  D  P  *  R  K  P  S  I  H  I  E  T  N  S  *  P  Q  L  Q  C  E  G  Q  T  S  P  R  Q  G  D  H  G  I  K  Q  T  S  C  *  I  S  E  A  E  S  Y  E  R  V  C  A  W  L  G  R  H  P  H  L  D  H  E  R  Y  C  C  W  N  A  E  H  W  L  R  L  R  L  L  C  M  Y  N  N  K  *  Y  C  L  S  T  F  I  N  P  M  S  V  Q  E  *  *  *  *  D  V  S  E  G  F  E  C  V  I  F  E :   K  W  H  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0076O09.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1" stop="534"/>
                    <exon start="817" stop="1203"/>
                    <exon start="1292" stop="1588"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1215</number_coding_nucleotides>
                  <number_encoded_amino_acids>405</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLADLESAPASVARLFSIDWYRNRINGKQEVMIGYSDSGKDAGRLSAAWQLYKAQEELVKVAKEFGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMNPPVAPNPEWRALLDEMSVVATKEYRSLVFQDPRFVEYFRLATPELEYGRMNIGSRPAKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIEKDIRNLQMLKDMYNGWPFFRVTLDLLEMVFAKGDPGIAALYDKLLVSEDLWPLGERLRSKYEETKGFLLQVAGHKDLLEGDPYLRQRLKLRDSYITTLNVSQAYTLKRIRDPNYNVKVRPHLDKEIMESSKPAAELVKLNPTSEYAPGLEDTLILTMKGIAAGMQNTG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="64" e_stop="279"/>
            <exon e_start="415" e_stop="534"/>
            <exon e_start="817" e_stop="1203"/>
            <exon e_start="1292" e_stop="1754"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.986"/>
          <exon-intron don_prob="0.891" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="64" e_stop="279" e_length="216"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="280" i_stop="414" i_length="135"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="415" e_stop="534" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.891" acc_prob="0.999">
            <gDNA_intron_boundary i_start="535" i_stop="816" i_length="282"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="817" e_stop="1203" e_length="387"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="0.987">
            <gDNA_intron_boundary i_start="1204" i_stop="1291" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="0.907">
            <gDNA_exon_boundary e_start="1292" e_stop="1754" e_length="463"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64" stop="279"/>
              <exon start="415" stop="534"/>
              <exon start="817" stop="1085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="430" stop="534"/>
              <exon start="817" stop="1203"/>
              <exon start="1292" stop="1530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="450" stop="534"/>
              <exon start="817" stop="1199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="872" stop="1203"/>
              <exon start="1292" stop="1583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="889" stop="1203"/>
              <exon start="1292" stop="1709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="889" stop="1203"/>
              <exon start="1292" stop="1707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="889" stop="1203"/>
              <exon start="1292" stop="1704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="984" stop="1203"/>
              <exon start="1292" stop="1687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1015" stop="1203"/>
              <exon start="1292" stop="1574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1042" stop="1203"/>
              <exon start="1292" stop="1754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1049" stop="1203"/>
              <exon start="1292" stop="1614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1049" stop="1203"/>
              <exon start="1292" stop="1475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1164" stop="1203"/>
              <exon start="1292" stop="1715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221623" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1200" stop="1203"/>
              <exon start="1292" stop="1439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1331" stop="1697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1373" stop="1691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234407" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAACCGTATCAATGGGAAACAAGAAGTTATGATTGGGTATTCTGATTCCGGTAAGGATGCTGGCCGACTATCTGCAGCTTGGCAATTGTACAAGGCTCAAGAGGAACTTGTAAAGGTGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAA : CCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTT : GCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAG : GTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGGATTTGAGTGTGTGATTTTTGATTCATACGTTCTTGAATATTATACATGGAGTAATTTAAAAAA</gDNA_template>
            <first_frame> R  N  R  I  N  G  K  Q  E  V  M  I  G  Y  S  D  S  G  K  D  A  G  R  L  S  A  A  W  Q  L  Y  K  A  Q  E  E  L  V  K  V  A  K  E  F  G  V  K  L  T  M  F  H  G  R  G  G  T  V  G  R  G  G  G  P  T  H  L  A  I  L  S  Q  :  P  P  V  A  P  N  P  E  W  R  A  L  L  D  E  M  S  V  V  A  T  K  E  Y  R  S  L  V  F  Q  D  P  R  F  V  E  Y  F  R  L  :  A  T  P  E  L  E  Y  G  R  M  N  I  G  S  R  P  A  K  R  K  P  S  G  G  I  E  S  L  R  A  I  P  W  I  F  A  W  T  Q  T  R  F  H  L  P  V  W  L  G  F  G  A  A  F  K  H  V  I  E  K  D  I  R  N  L  Q  M  L  K  D  M  Y  N  G  W  P  F  F  R  V  T  L  D  L  L  E  M  V  F  A  K  G  D  P  G  I  A  A  L  Y  D  K  L  L  V  S  E  D  L  W  P  L  G  E  R  L  R  S  K  Y  E  E  T  K  G  F  L  L  Q  :  V  A  G  H  K  D  L  L  E  G  D  P  Y  L  R  Q  R  L  K  L  R  D  S  Y  I  T  T  L  N  V  S  Q  A  Y  T  L  K  R  I  R  D  P  N  Y  N  V  K  V  R  P  H  L  D  K  E  I  M  E  S  S  K  P  A  A  E  L  V  K  L  N  P  T  S  E  Y  A  P  G  L  E  D  T  L  I  L  T  M  K  G  I  A  A  G  M  Q  N  T  G  *  G  *  G  Y  Y  V  C  I  I  I  S  D  I  V  F  Q  L  L  *  I  L  C  L  F  K  N  N  N  D  E  M  F  L  K  D  L  S  V  *  F  L  I  H  T  F  L  N  I  I  H  G  V  I  *  K  </first_frame>
            <second_frame>  E  T  V  S  M  G  N  K  K  L  *  L  G  I  L  I  P  V  R  M  L  A  D  Y  L  Q  L  G  N  C  T  R  L  K  R  N  L  *  R  W  Q  K  N  L  E  *  S  *  Q  C  S  M  A  E  V  G  L  *  E  G  E  G  V  P  P  T  L  L  F  Y  H  N :   P  L  W  L  L  I  Q  S  G  V  P  S  W  M  R  C  L  L  L  L  R  K  S  I  G  L  *  C  S  R  I  H  D  L  L  N  T  S  A  L :   Q  P  Q  N  *  N  M  V  A  *  T  L  E  V  A  Q  P  K  G  S  Q  V  V  G  L  N  L  F  E  L  F  H  G  S  L  H  G  L  R  Q  G  F  I  S  Q  S  G  L  A  L  G  L  H  S  S  T  L  L  R  R  I  *  E  I  C  K  C  S  R  I  C  T  M  D  G  L  S  L  E  *  H  L  T  C  S  K  W  S  S  L  R  E  T  L  V  L  L  H  C  M  I  N  F  *  Y  P  K  I  C  G  R  L  E  S  D  *  D  P  N  T  K  K  Q  R  A  F  S  F  R :   L  L  G  T  R  I  Y  W  K  E  I  H  T  *  G  K  G  S  N  F  V  I  L  T  S  R  P  L  T  *  A  K  H  T  H  *  N  E  F  V  T  P  T  T  M  *  R  S  D  L  T  *  T  R  R  S  W  N  Q  A  N  Q  L  L  N  *  *  S  *  I  L  R  A  S  M  R  L  A  W  K  T  P  S  S  *  P  *  K  V  L  L  L  E  C  R  T  L  V  K  A  K  A  I  M  Y  V  *  *  *  V  I  L  S  F  N  F  Y  K  S  Y  V  C  S  R  I  I  M  M  R  C  F  *  R  I  *  V  C  D  F  *  F  I  R  S  *  I  L  Y  M  E  *  F  K  K </second_frame>
            <third_frame>   K  P  Y  Q  W  E  T  R  S  Y  D  W  V  F  *  F  R  *  G  C  W  P  T  I  C  S  L  A  I  V  Q  G  S  R  G  T  C  K  G  G  K  R  I  W  S  K  A  N  N  V  P  W  P  R  W  D  C  R  K  G  R  G  S  H  P  P  C  Y  F  I  T   : T  P  C  G  S  *  S  R  V  A  C  P  L  G  *  D  V  C  C  C  Y  E  R  V  S  V  F  S  V  P  G  S  T  I  C  *  I  L  P  P   : C  N  P  R  I  R  I  W  S  H  E  H  W  K  S  P  S  Q  K  E  A  K  W  W  D  *  I  S  S  S  Y  S  M  D  L  C  M  D  S  D  K  V  S  S  P  S  L  A  W  L  W  G  C  I  Q  A  R  Y  *  E  G  Y  K  K  S  A  N  A  Q  G  Y  V  Q  W  M  A  F  L  *  S  D  T  *  L  A  R  N  G  L  R  *  G  R  P  W  Y  C  C  I  V  *  *  T  F  S  I  R  R  S  V  A  A  W  R  A  I  E  I  Q  I  R  R  N  K  G  L  S  P  S   : G  C  W  A  Q  G  S  I  G  R  R  S  I  L  E  A  K  A  Q  T  S  *  F  L  H  H  D  P  *  R  K  P  S  I  H  I  E  T  N  S  *  P  Q  L  Q  C  E  G  Q  T  S  P  R  Q  G  D  H  G  I  K  Q  T  S  C  *  I  S  E  A  E  S  Y  E  R  V  C  A  W  L  G  R  H  P  H  L  D  H  E  R  Y  C  C  W  N  A  E  H  W  L  R  L  R  L  L  C  M  Y  N  N  K  *  Y  C  L  S  T  F  I  N  P  M  S  V  Q  E  *  *  *  *  D  V  S  E  G  F  E  C  V  I  F  D  S  Y  V  L  E  Y  Y  T  W  S  N  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0076O09.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64" stop="279"/>
                    <exon start="415" stop="534"/>
                    <exon start="817" stop="1203"/>
                    <exon start="1292" stop="1588"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1017</number_coding_nucleotides>
                  <number_encoded_amino_acids>339</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNRINGKQEVMIGYSDSGKDAGRLSAAWQLYKAQEELVKVAKEFGVKLTMFHGRGGTVGRGGGPTHLAILSQPPVAPNPEWRALLDEMSVVATKEYRSLVFQDPRFVEYFRLATPELEYGRMNIGSRPAKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIEKDIRNLQMLKDMYNGWPFFRVTLDLLEMVFAKGDPGIAALYDKLLVSEDLWPLGERLRSKYEETKGFLLQVAGHKDLLEGDPYLRQRLKLRDSYITTLNVSQAYTLKRIRDPNYNVKVRPHLDKEIMESSKPAAELVKLNPTSEYAPGLEDTLILTMKGIAAGMQNTG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="8292" PGL_stop="963"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8292" e_stop="7820"/>
            <exon e_start="6668" e_stop="6619"/>
            <exon e_start="6538" e_stop="6463"/>
            <exon e_start="6373" e_stop="6278"/>
            <exon e_start="6139" e_stop="6059"/>
            <exon e_start="5960" e_stop="5869"/>
            <exon e_start="5445" e_stop="5350"/>
            <exon e_start="4868" e_stop="4800"/>
            <exon e_start="4411" e_stop="4228"/>
            <exon e_start="3896" e_stop="3837"/>
            <exon e_start="2500" e_stop="2281"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.937"/>
          <exon-intron don_prob="0.997" acc_prob="0.041" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.913" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="8292" e_stop="7820" e_length="473"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6668" e_stop="6619" e_length="50"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.041">
            <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6538" e_stop="6463" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.938" acc_prob="0.994">
            <gDNA_intron_boundary i_start="6462" i_stop="6374" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6373" e_stop="6278" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.983">
            <gDNA_intron_boundary i_start="6277" i_stop="6140" i_length="138"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6139" e_stop="6059" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="6058" i_stop="5961" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="5960" e_stop="5869" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="5868" i_stop="5446" i_length="423"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="5445" e_stop="5350" e_length="96"/>
          </exon>
          <intron i_serial="7" don_prob="0.955" acc_prob="0.939">
            <gDNA_intron_boundary i_start="5349" i_stop="4869" i_length="481"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="4868" e_stop="4800" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.913" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4799" i_stop="4412" i_length="388"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="4411" e_stop="4228" e_length="184"/>
          </exon>
          <intron i_serial="9" don_prob="0.975" acc_prob="0.987">
            <gDNA_intron_boundary i_start="4227" i_stop="3897" i_length="331"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="3896" e_stop="3837" e_length="60"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3836" i_stop="2501" i_length="1336"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="2500" e_stop="2281" e_length="220"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8292" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8292" stop="7820"/>
              <exon start="6668" stop="6619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8263" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8201" stop="7907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8200" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5350"/>
              <exon start="4868" stop="4800"/>
              <exon start="4411" stop="4228"/>
              <exon start="3896" stop="3837"/>
              <exon start="2500" stop="2353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8194" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8194" stop="7956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8170" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8170" stop="7879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8138" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8138" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8137" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8136" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8135" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5350"/>
              <exon start="4868" stop="4819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8134" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8134" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8130" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8130" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8130" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8128" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5350"/>
              <exon start="4868" stop="4811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8125" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8124" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5350"/>
              <exon start="4868" stop="4826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8122" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8122" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8117" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8116" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8108" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8106" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7981" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6367" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5350"/>
              <exon start="4868" stop="4800"/>
              <exon start="4411" stop="4326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6293" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5350"/>
              <exon start="4868" stop="4800"/>
              <exon start="4411" stop="4228"/>
              <exon start="3896" stop="3837"/>
              <exon start="2500" stop="2440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6293" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5350"/>
              <exon start="4868" stop="4800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6293" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5350"/>
              <exon start="4868" stop="4835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6063" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5350"/>
              <exon start="4868" stop="4800"/>
              <exon start="4411" stop="4228"/>
              <exon start="3896" stop="3837"/>
              <exon start="2500" stop="2459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5445" stop="5350"/>
              <exon start="4868" stop="4800"/>
              <exon start="4411" stop="4228"/>
              <exon start="3896" stop="3837"/>
              <exon start="2500" stop="2281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372627" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4835" stop="4800"/>
              <exon start="4411" stop="4228"/>
              <exon start="3896" stop="3837"/>
              <exon start="2500" stop="2388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282688" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAACTTTTTCATAGCCAAACAATAAAAAGGAAGCAATGTTATCATCAAAAAGGGTCCACCCTTATCATTTACTACCAATTGGCACTAAGATATTTATTTTCCCTTGTCTATAAGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG : GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG : TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA : GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT : GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG : TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG : TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAA : GGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGG : GATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAG : AGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCA : ATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCATGTAAATTCTTATATATACTAGATCGTGCTCTCAGTTTCGTTGATAATCTCAAGTTTCTTATCCCGTTGAAGGTTTATGAATCGTTTTCCATAAAAAAAAAAAAGAGTGTAAATTCTTCTAGTTAATTACGATTATCAGGAGTTTCCATTTTGTGCCACTTTCTATTATACAAGAGCAA</gDNA_template>
            <first_frame> Q  N  F  F  I  A  K  Q  *  K  G  S  N  V  I  I  K  K  G  P  P  L  S  F  T  T  N  W  H  *  D  I  Y  F  P  L  S  I  R  S  K  N  T  T  P  S  L  Q  I  E  Q  K  W  E  F  *  A  T  A  T  S  Q  L  P  L  Q  P  H  P  Y  L  K  I  L  Q  T  I  Q  P  H  C  Q  F  Q  H  N  P  S  R  N  L  *  N  C  L  V  G  W  L  L  M  G  T  M  L  L  T  R  P  L  P  L  L  S  L  G  S  T  G  V  R  M  W  I  L  S  P  L  M  I  L  Y  G  I  R  N  L  W  V  A  *  R  S  I  F  R  I  L  K  K  M  P  L  L  L  L  *  R :   K  R  Y  Q  D  F  L  A  *  T  E  S  *  I  L  T   : V  W  K  L  T  *  P  R  S  *  L  P  L  H  N  L  F  *  N  Q  K  S  K  I  L  K :   L  V  L  L  H  L  K  N  G  G  Q  H  Q  H  D  A  S  R  R  N  G  A  K  L  P  R  L  Q  L  G  A  V :   T  *  C  *  G  K  *  N  V  L  K  G  I  Q  R  L  W  L  L  S  Q  G  N  S  I  L  S :   *  R  I  N  C  S  S  S  Q  L  G  L  V  V  L  V  *  F  Q  L  I  S  L  I  L  L  K  *  Q  *   : V  T  L  L  G  *  L  V  L  *  C  T  C  V  C  L  E  T  V  W  I  L  C  S  Q  M  D  P  E  H  L  L   : R  E  L  L  G  S  Q  G  Y  W  F  L  L  L  W  S  *  F  L  I  G  G  M   : G  S  *  S  Q  S  M  D  S  C  T  S  S  *  Y  P  C  *  S  D  F  S  L  T  R  L  Q  L  L  S  K  Q  S  R  K  V  Y  R  S  L  E  I  S  H  K  L  S  S  S  F  Y  D  F  P  S  T  S  N  E  N  S  R :   G  E  K  S  S  G  R  R  W  I  R  K  M  S  Y  N  I  Y  T  Q :   F  I  T  G  W  I  E  Q  I  D  D  F  L  M  *  I  L  I  Y  T  R  S  C  S  Q  F  R  *  *  S  Q  V  S  Y  P  V  E  G  L  *  I  V  F  H  K  K  K  K  E  C  K  F  F  *  L  I  T  I  I  R  S  F  H  F  V  P  L  S  I  I  Q  E  Q </first_frame>
            <second_frame>  K  T  F  S  *  P  N  N  K  K  E  A  M  L  S  S  K  R  V  H  P  Y  H  L  L  P  I  G  T  K  I  F  I  F  P  C  L  *  D  Q  K  T  Q  P  H  H  S  K  L  N  K  N  G  S  S  K  L  L  L  P  P  N  Y  L  Y  S  H  T  H  I  S  R  F  F  K  Q  S  N  P  I  V  N  S  N  T  I  Q  A  E  I  C  E  I  V  *  W  G  G  C  *  W  G  L  C  C  *  P  A  H  Y  H  Y  *  A  *  E  V  L  G  *  G  C  G  S  S  H  L  *  *  F  Y  M  E  *  G  I  Y  G  S  H  E  E  V  Y  S  G  S  S  R  K  C  P  C  C  C  C  K   : G  R  D  I  R  I  S  *  L  K  Q  S  H  E  S  *  Q  :  F  G  S  *  L  D  Q  G  A  N  C  P  F  T  T  C  S  R  T  R  S  R  K  Y  S   : S  W  F  Y  C  I  S  K  M  A  A  S  T  N  T  T  R  A  G  E  M  G  Q  S  C  Q  G  C  N  W  G  Q   : *  R  D  V  E  G  N  K  T  S  S  R  G  S  K  G  Y  G  C  S  V  K  G  T  V  S  *   : V  K  E  *  I  A  A  P  H  S  W  D  W  W  C  W  C  D  F  S  L  Y  L  L  F  S  *  N  N  S  K  :  L  H  C  W  V  D  W  F  F  D  V  H  A  Y  A  W  K  Q  C  G  F  Y  A  V  R  W  T  Q  S  T  Y  *  :  G  S  C  W  A  A  K  A  I  G  S  C  Y  F  G  H  D  F  *  S  V  E  W  :  D  P  S  P  R  V  W  I  H  A  P  R  V  D  T  H  A  S  R  I  F  H  L  Q  D  C  N  F  C  P  S  N  R  G  R  C  I  D  H  W  K  *  V  T  S  L  A  L  V  F  M  I  F  H  Q  P  L  M  K  I  V   : E  E  K  K  V  Q  E  D  V  G  F  E  K  *  A  T  T  S  I  L   : N  L  S  L  D  G  L  N  K  S  M  I  S  S  C  K  F  L  Y  I  L  D  R  A  L  S  F  V  D  N  L  K  F  L  I  P  L  K  V  Y  E  S  F  S  I  K  K  K  K  S  V  N  S  S  S  *  L  R  L  S  G  V  S  I  L  C  H  F  L  L  Y  K  S   </second_frame>
            <third_frame>   K  L  F  H  S  Q  T  I  K  R  K  Q  C  Y  H  Q  K  G  S  T  L  I  I  Y  Y  Q  L  A  L  R  Y  L  F  S  L  V  Y  K  I  K  K  H  N  P  I  T  P  N  *  T  K  M  G  V  L  S  Y  C  Y  L  P  I  T  S  T  A  T  P  I  S  Q  D  S  S  N  N  P  T  P  L  S  I  P  T  Q  S  K  Q  K  S  V  K  L  S  S  G  V  A  A  N  G  D  Y  A  A  D  P  P  T  T  T  T  K  L  R  K  Y  W  G  E  D  V  D  P  L  T  S  D  D  F  I  W  N  K  E  F  M  G  R  M  K  K  Y  I  Q  D  P  Q  E  N  A  P  A  A  A  V  K  :  E  E  I  S  G  F  L  S  L  N  R  V  M  N  L  D  S :   L  E  V  D  L  T  K  E  L  T  A  P  S  Q  P  V  L  E  P  E  V  E  N  T  Q  :  A  G  F  T  A  S  Q  K  W  R  P  A  P  T  R  R  E  Q  E  K  W  G  K  A  A  K  A  A  T  G  G  S  :  D  V  M  L  R  E  I  K  R  P  Q  G  D  P  K  V  M  A  A  Q  S  R  E  Q  Y  L  K  :  L  K  N  K  L  Q  L  L  T  V  G  I  G  G  V  G  V  I  S  A  Y  I  S  Y  S  P  E  I  T  V  S :   Y  T  A  G  L  I  G  S  L  M  Y  M  R  M  L  G  N  S  V  D  S  M  Q  S  D  G  P  R  A  L  I  K :   G  A  V  G  Q  P  R  L  L  V  P  V  T  L  V  M  I  F  N  R  W  N  G :   I  L  V  P  E  Y  G  F  M  H  L  E  L  I  P  M  L  V  G  F  F  T  Y  K  I  A  T  F  V  Q  A  I  E  E  G  V  S  I  I  G  N  K  S  Q  A  *  L  *  F  L  *  F  S  I  N  L  *  *  K  *  *  :  R  R  K  K  F  R  K  T  L  D  S  K  N  E  L  Q  H  L  Y  S  :  I  Y  H  W  M  D  *  T  N  R  *  F  P  H  V  N  S  Y  I  Y  *  I  V  L  S  V  S  L  I  I  S  S  F  L  S  R  *  R  F  M  N  R  F  P  *  K  K  K  R  V  *  I  L  L  V  N  Y  D  Y  Q  E  F  P  F  C  A  T  F  Y  Y  T  R  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0076O09.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8143" stop="7820"/>
                    <exon start="6668" stop="6619"/>
                    <exon start="6538" stop="6463"/>
                    <exon start="6373" stop="6278"/>
                    <exon start="6139" stop="6059"/>
                    <exon start="5960" stop="5869"/>
                    <exon start="5445" stop="5350"/>
                    <exon start="4868" stop="4800"/>
                    <exon start="4411" stop="4273"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1020</number_coding_nucleotides>
                  <number_encoded_amino_acids>340</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKMGVLSYCYLPITSTATPISQDSSNNPTPLSIPTQSKQKSVKLSSGVAANGDYAADPPTTTTKLRKYWGEDVDPLTSDDFIWNKEFMGRMKKYIQDPQENAPAAAVKEEISGFLSLNRVMNLDSLEVDLTKELTAPSQPVLEPEVENTQAGFTASQKWRPAPTRREQEKWGKAAKAATGGSDVMLREIKRPQGDPKVMAAQSREQYLKLKNKLQLLTVGIGGVGVISAYISYSPEITVSYTAGLIGSLMYMRMLGNSVDSMQSDGPRALIKGAVGQPRLLVPVTLVMIFNRWNGILVPEYGFMHLELIPMLVGFFTYKIATFVQAIEEGVSIIGNKSQA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="8292" e_stop="7820"/>
            <exon e_start="6668" e_stop="6619"/>
            <exon e_start="6538" e_stop="6463"/>
            <exon e_start="6373" e_stop="6278"/>
            <exon e_start="6139" e_stop="6059"/>
            <exon e_start="5960" e_stop="5869"/>
            <exon e_start="5445" e_stop="5350"/>
            <exon e_start="4868" e_stop="4800"/>
            <exon e_start="4411" e_stop="4228"/>
            <exon e_start="3896" e_stop="3837"/>
            <exon e_start="2500" e_stop="2459"/>
            <exon e_start="1697" e_stop="1325"/>
            <exon e_start="997" e_stop="963"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.937"/>
          <exon-intron don_prob="0.997" acc_prob="0.041" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.913" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.983"/>
          <exon-intron don_prob="0.926" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.922"/>
          <exon-only e_score="0.886"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="8292" e_stop="7820" e_length="473"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6668" e_stop="6619" e_length="50"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.041">
            <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80"/>
          </intron>
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        </exon-intron_info>
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          <PGS_line>
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              <exon start="8263" stop="7820"/>
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            <referenceDNA id="SGN-E477157" strand="+"/>
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            <referenceDNA id="SGN-E372562" strand="+"/>
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          <PGS_line>
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              <exon start="8194" stop="7956"/>
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            <referenceDNA id="SGN-E287842" strand="+"/>
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          <PGS_line>
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              <exon start="8170" stop="7820"/>
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            <referenceDNA id="SGN-E269645" strand="+"/>
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          <PGS_line>
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              <exon start="8170" stop="7879"/>
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            <referenceDNA id="SGN-E270686" strand="+"/>
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            <referenceDNA id="SGN-E298590" strand="+"/>
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          <PGS_line>
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              <exon start="8138" stop="7820"/>
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            <referenceDNA id="SGN-E267697" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E343878" strand="+"/>
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            <referenceDNA id="SGN-E728069" strand="+"/>
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            <referenceDNA id="SGN-E709602" strand="+"/>
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            <referenceDNA id="SGN-E271858" strand="+"/>
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            <referenceDNA id="SGN-E268104" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E325944" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E326268" strand="+"/>
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            <referenceDNA id="SGN-E280181" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E269605" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E269216" strand="+"/>
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          <PGS_line>
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              <exon start="6293" stop="6278"/>
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            <referenceDNA id="SGN-E371678" strand="+"/>
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          <PGS_line>
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              <exon start="6293" stop="6278"/>
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            <referenceDNA id="SGN-E370518" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6063" stop="6059"/>
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              <exon start="3896" stop="3837"/>
              <exon start="2500" stop="2459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2467" stop="2459"/>
              <exon start="1697" stop="1325"/>
              <exon start="997" stop="963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416617" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAACTTTTTCATAGCCAAACAATAAAAAGGAAGCAATGTTATCATCAAAAAGGGTCCACCCTTATCATTTACTACCAATTGGCACTAAGATATTTATTTTCCCTTGTCTATAAGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG : GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG : TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA : GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT : GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG : TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG : TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAA : GGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGG : GATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAG : AGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCA : ATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCAT : TCAAATCCTTCAGAAACATCTCATCATTATTATTCTTGAACAGACATAGGATTTATAAAAGTTGAAAGACAATATCACTTATTATTATACATACATAATAGCCTTAGCCTTAACCAGTGTTCTGCATTCCAGCAGCAATACCTTTCATGGTCAAGATGAGGGTGTCTTCCAAGCCAGGCGCATACTCGCTCGTAGGATTCAGCTTCACTAATTCAGCAGCTGGTTTGCTTGATTCCATGATCTCCTTGTCTAGGTGAGGTCTGACCTTCACATTGTAGTTGGGGTCACGAATTCGTTTCAATGTGTATGCTTGGCTTACGTTAAGGGTCGTGATGTAAGAATCACGAAGTTTGAGCCTTTGCCTCAAGTATGG : CCTTCTCAATAACGTGCTTGAATGCAGCCCCAAAG</gDNA_template>
            <first_frame> Q  N  F  F  I  A  K  Q  *  K  G  S  N  V  I  I  K  K  G  P  P  L  S  F  T  T  N  W  H  *  D  I  Y  F  P  L  S  I  R  S  K  N  T  T  P  S  L  Q  I  E  Q  K  W  E  F  *  A  T  A  T  S  Q  L  P  L  Q  P  H  P  Y  L  K  I  L  Q  T  I  Q  P  H  C  Q  F  Q  H  N  P  S  R  N  L  *  N  C  L  V  G  W  L  L  M  G  T  M  L  L  T  R  P  L  P  L  L  S  L  G  S  T  G  V  R  M  W  I  L  S  P  L  M  I  L  Y  G  I  R  N  L  W  V  A  *  R  S  I  F  R  I  L  K  K  M  P  L  L  L  L  *  R :   K  R  Y  Q  D  F  L  A  *  T  E  S  *  I  L  T   : V  W  K  L  T  *  P  R  S  *  L  P  L  H  N  L  F  *  N  Q  K  S  K  I  L  K :   L  V  L  L  H  L  K  N  G  G  Q  H  Q  H  D  A  S  R  R  N  G  A  K  L  P  R  L  Q  L  G  A  V :   T  *  C  *  G  K  *  N  V  L  K  G  I  Q  R  L  W  L  L  S  Q  G  N  S  I  L  S :   *  R  I  N  C  S  S  S  Q  L  G  L  V  V  L  V  *  F  Q  L  I  S  L  I  L  L  K  *  Q  *   : V  T  L  L  G  *  L  V  L  *  C  T  C  V  C  L  E  T  V  W  I  L  C  S  Q  M  D  P  E  H  L  L   : R  E  L  L  G  S  Q  G  Y  W  F  L  L  L  W  S  *  F  L  I  G  G  M   : G  S  *  S  Q  S  M  D  S  C  T  S  S  *  Y  P  C  *  S  D  F  S  L  T  R  L  Q  L  L  S  K  Q  S  R  K  V  Y  R  S  L  E  I  S  H  K  L  S  S  S  F  Y  D  F  P  S  T  S  N  E  N  S  R :   G  E  K  S  S  G  R  R  W  I  R  K  M  S  Y  N  I  Y  T  Q :   F  I  T  G  W  I  E  Q  I  D  D  F  L  I :   Q  I  L  Q  K  H  L  I  I  I  I  L  E  Q  T  *  D  L  *  K  L  K  D  N  I  T  Y  Y  Y  T  Y  I  I  A  L  A  L  T  S  V  L  H  S  S  S  N  T  F  H  G  Q  D  E  G  V  F  Q  A  R  R  I  L  A  R  R  I  Q  L  H  *  F  S  S  W  F  A  *  F  H  D  L  L  V  *  V  R  S  D  L  H  I  V  V  G  V  T  N  S  F  Q  C  V  C  L  A  Y  V  K  G  R  D  V  R  I  T  K  F  E  P  L  P  Q  V  W  :  P  S  Q  *  R  A  *  M  Q  P  Q   </first_frame>
            <second_frame>  K  T  F  S  *  P  N  N  K  K  E  A  M  L  S  S  K  R  V  H  P  Y  H  L  L  P  I  G  T  K  I  F  I  F  P  C  L  *  D  Q  K  T  Q  P  H  H  S  K  L  N  K  N  G  S  S  K  L  L  L  P  P  N  Y  L  Y  S  H  T  H  I  S  R  F  F  K  Q  S  N  P  I  V  N  S  N  T  I  Q  A  E  I  C  E  I  V  *  W  G  G  C  *  W  G  L  C  C  *  P  A  H  Y  H  Y  *  A  *  E  V  L  G  *  G  C  G  S  S  H  L  *  *  F  Y  M  E  *  G  I  Y  G  S  H  E  E  V  Y  S  G  S  S  R  K  C  P  C  C  C  C  K   : G  R  D  I  R  I  S  *  L  K  Q  S  H  E  S  *  Q  :  F  G  S  *  L  D  Q  G  A  N  C  P  F  T  T  C  S  R  T  R  S  R  K  Y  S   : S  W  F  Y  C  I  S  K  M  A  A  S  T  N  T  T  R  A  G  E  M  G  Q  S  C  Q  G  C  N  W  G  Q   : *  R  D  V  E  G  N  K  T  S  S  R  G  S  K  G  Y  G  C  S  V  K  G  T  V  S  *   : V  K  E  *  I  A  A  P  H  S  W  D  W  W  C  W  C  D  F  S  L  Y  L  L  F  S  *  N  N  S  K  :  L  H  C  W  V  D  W  F  F  D  V  H  A  Y  A  W  K  Q  C  G  F  Y  A  V  R  W  T  Q  S  T  Y  *  :  G  S  C  W  A  A  K  A  I  G  S  C  Y  F  G  H  D  F  *  S  V  E  W  :  D  P  S  P  R  V  W  I  H  A  P  R  V  D  T  H  A  S  R  I  F  H  L  Q  D  C  N  F  C  P  S  N  R  G  R  C  I  D  H  W  K  *  V  T  S  L  A  L  V  F  M  I  F  H  Q  P  L  M  K  I  V   : E  E  K  K  V  Q  E  D  V  G  F  E  K  *  A  T  T  S  I  L   : N  L  S  L  D  G  L  N  K  S  M  I  S  S   : F  K  S  F  R  N  I  S  S  L  L  F  L  N  R  H  R  I  Y  K  S  *  K  T  I  S  L  I  I  I  H  T  *  *  P  *  P  *  P  V  F  C  I  P  A  A  I  P  F  M  V  K  M  R  V  S  S  K  P  G  A  Y  S  L  V  G  F  S  F  T  N  S  A  A  G  L  L  D  S  M  I  S  L  S  R  *  G  L  T  F  T  L  *  L  G  S  R  I  R  F  N  V  Y  A  W  L  T  L  R  V  V  M  *  E  S  R  S  L  S  L  C  L  K  Y  G :   L  L  N  N  V  L  E  C  S  P  K  </second_frame>
            <third_frame>   K  L  F  H  S  Q  T  I  K  R  K  Q  C  Y  H  Q  K  G  S  T  L  I  I  Y  Y  Q  L  A  L  R  Y  L  F  S  L  V  Y  K  I  K  K  H  N  P  I  T  P  N  *  T  K  M  G  V  L  S  Y  C  Y  L  P  I  T  S  T  A  T  P  I  S  Q  D  S  S  N  N  P  T  P  L  S  I  P  T  Q  S  K  Q  K  S  V  K  L  S  S  G  V  A  A  N  G  D  Y  A  A  D  P  P  T  T  T  T  K  L  R  K  Y  W  G  E  D  V  D  P  L  T  S  D  D  F  I  W  N  K  E  F  M  G  R  M  K  K  Y  I  Q  D  P  Q  E  N  A  P  A  A  A  V  K  :  E  E  I  S  G  F  L  S  L  N  R  V  M  N  L  D  S :   L  E  V  D  L  T  K  E  L  T  A  P  S  Q  P  V  L  E  P  E  V  E  N  T  Q  :  A  G  F  T  A  S  Q  K  W  R  P  A  P  T  R  R  E  Q  E  K  W  G  K  A  A  K  A  A  T  G  G  S  :  D  V  M  L  R  E  I  K  R  P  Q  G  D  P  K  V  M  A  A  Q  S  R  E  Q  Y  L  K  :  L  K  N  K  L  Q  L  L  T  V  G  I  G  G  V  G  V  I  S  A  Y  I  S  Y  S  P  E  I  T  V  S :   Y  T  A  G  L  I  G  S  L  M  Y  M  R  M  L  G  N  S  V  D  S  M  Q  S  D  G  P  R  A  L  I  K :   G  A  V  G  Q  P  R  L  L  V  P  V  T  L  V  M  I  F  N  R  W  N  G :   I  L  V  P  E  Y  G  F  M  H  L  E  L  I  P  M  L  V  G  F  F  T  Y  K  I  A  T  F  V  Q  A  I  E  E  G  V  S  I  I  G  N  K  S  Q  A  *  L  *  F  L  *  F  S  I  N  L  *  *  K  *  *  :  R  R  K  K  F  R  K  T  L  D  S  K  N  E  L  Q  H  L  Y  S  :  I  Y  H  W  M  D  *  T  N  R  *  F  P  H  :  S  N  P  S  E  T  S  H  H  Y  Y  S  *  T  D  I  G  F  I  K  V  E  R  Q  Y  H  L  L  L  Y  I  H  N  S  L  S  L  N  Q  C  S  A  F  Q  Q  Q  Y  L  S  W  S  R  *  G  C  L  P  S  Q  A  H  T  R  S  *  D  S  A  S  L  I  Q  Q  L  V  C  L  I  P  *  S  P  C  L  G  E  V  *  P  S  H  C  S  W  G  H  E  F  V  S  M  C  M  L  G  L  R  *  G  S  *  C  K  N  H  E  V  *  A  F  A  S  S  M   : A  F  S  I  T  C  L  N  A  A  P  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0076O09.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8143" stop="7820"/>
                    <exon start="6668" stop="6619"/>
                    <exon start="6538" stop="6463"/>
                    <exon start="6373" stop="6278"/>
                    <exon start="6139" stop="6059"/>
                    <exon start="5960" stop="5869"/>
                    <exon start="5445" stop="5350"/>
                    <exon start="4868" stop="4800"/>
                    <exon start="4411" stop="4273"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1020</number_coding_nucleotides>
                  <number_encoded_amino_acids>340</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKMGVLSYCYLPITSTATPISQDSSNNPTPLSIPTQSKQKSVKLSSGVAANGDYAADPPTTTTKLRKYWGEDVDPLTSDDFIWNKEFMGRMKKYIQDPQENAPAAAVKEEISGFLSLNRVMNLDSLEVDLTKELTAPSQPVLEPEVENTQAGFTASQKWRPAPTRREQEKWGKAAKAATGGSDVMLREIKRPQGDPKVMAAQSREQYLKLKNKLQLLTVGIGGVGVISAYISYSPEITVSYTAGLIGSLMYMRMLGNSVDSMQSDGPRALIKGAVGQPRLLVPVTLVMIFNRWNGILVPEYGFMHLELIPMLVGFFTYKIATFVQAIEEGVSIIGNKSQA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="8292" e_stop="7820"/>
            <exon e_start="6668" e_stop="6619"/>
            <exon e_start="6538" e_stop="6463"/>
            <exon e_start="6373" e_stop="6278"/>
            <exon e_start="6139" e_stop="6059"/>
            <exon e_start="5960" e_stop="5869"/>
            <exon e_start="5445" e_stop="5350"/>
            <exon e_start="4868" e_stop="4800"/>
            <exon e_start="4411" e_stop="4228"/>
            <exon e_start="3896" e_stop="3833"/>
            <exon e_start="2496" e_stop="2357"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.937"/>
          <exon-intron don_prob="0.997" acc_prob="0.041" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.913" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="8292" e_stop="7820" e_length="473"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6668" e_stop="6619" e_length="50"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.041">
            <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6538" e_stop="6463" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.938" acc_prob="0.994">
            <gDNA_intron_boundary i_start="6462" i_stop="6374" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6373" e_stop="6278" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.983">
            <gDNA_intron_boundary i_start="6277" i_stop="6140" i_length="138"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6139" e_stop="6059" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="6058" i_stop="5961" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="5960" e_stop="5869" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="5868" i_stop="5446" i_length="423"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="5445" e_stop="5350" e_length="96"/>
          </exon>
          <intron i_serial="7" don_prob="0.955" acc_prob="0.939">
            <gDNA_intron_boundary i_start="5349" i_stop="4869" i_length="481"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="4868" e_stop="4800" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.913" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4799" i_stop="4412" i_length="388"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="4411" e_stop="4228" e_length="184"/>
          </exon>
          <intron i_serial="9" don_prob="0.975" acc_prob="0.987">
            <gDNA_intron_boundary i_start="4227" i_stop="3897" i_length="331"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="3896" e_stop="3833" e_length="64"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3832" i_stop="2497" i_length="1336"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="2496" e_stop="2357" e_length="140"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8292" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8292" stop="7820"/>
              <exon start="6668" stop="6619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8263" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8201" stop="7907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8194" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8194" stop="7956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8170" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8170" stop="7879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8138" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8138" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8137" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8136" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8135" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5350"/>
              <exon start="4868" stop="4819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8134" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8134" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8130" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8130" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8130" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8128" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5350"/>
              <exon start="4868" stop="4811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8125" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8124" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5350"/>
              <exon start="4868" stop="4826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8122" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8122" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8117" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8116" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8108" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8106" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7981" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6367" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5350"/>
              <exon start="4868" stop="4800"/>
              <exon start="4411" stop="4326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6293" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5350"/>
              <exon start="4868" stop="4800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6293" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5350"/>
              <exon start="4868" stop="4835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6128" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5350"/>
              <exon start="4868" stop="4800"/>
              <exon start="4411" stop="4228"/>
              <exon start="3896" stop="3833"/>
              <exon start="2496" stop="2357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370517" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAACTTTTTCATAGCCAAACAATAAAAAGGAAGCAATGTTATCATCAAAAAGGGTCCACCCTTATCATTTACTACCAATTGGCACTAAGATATTTATTTTCCCTTGTCTATAAGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG : GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG : TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA : GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT : GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG : TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG : TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAA : GGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGG : GATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAG : AGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCAATTT : ATCACTGGATGGATTGAACAAATCGATGATTTCCTCATGTAAATTCTTATATATACTAGATCGTGCTCTCAGTTTCGTTGATAATCTCAAGTTTCTTATCCCGTTGAAGGTTTATGAATCGTTTTCCATAAAAAAAAAAA</gDNA_template>
            <first_frame> Q  N  F  F  I  A  K  Q  *  K  G  S  N  V  I  I  K  K  G  P  P  L  S  F  T  T  N  W  H  *  D  I  Y  F  P  L  S  I  R  S  K  N  T  T  P  S  L  Q  I  E  Q  K  W  E  F  *  A  T  A  T  S  Q  L  P  L  Q  P  H  P  Y  L  K  I  L  Q  T  I  Q  P  H  C  Q  F  Q  H  N  P  S  R  N  L  *  N  C  L  V  G  W  L  L  M  G  T  M  L  L  T  R  P  L  P  L  L  S  L  G  S  T  G  V  R  M  W  I  L  S  P  L  M  I  L  Y  G  I  R  N  L  W  V  A  *  R  S  I  F  R  I  L  K  K  M  P  L  L  L  L  *  R :   K  R  Y  Q  D  F  L  A  *  T  E  S  *  I  L  T   : V  W  K  L  T  *  P  R  S  *  L  P  L  H  N  L  F  *  N  Q  K  S  K  I  L  K :   L  V  L  L  H  L  K  N  G  G  Q  H  Q  H  D  A  S  R  R  N  G  A  K  L  P  R  L  Q  L  G  A  V :   T  *  C  *  G  K  *  N  V  L  K  G  I  Q  R  L  W  L  L  S  Q  G  N  S  I  L  S :   *  R  I  N  C  S  S  S  Q  L  G  L  V  V  L  V  *  F  Q  L  I  S  L  I  L  L  K  *  Q  *   : V  T  L  L  G  *  L  V  L  *  C  T  C  V  C  L  E  T  V  W  I  L  C  S  Q  M  D  P  E  H  L  L   : R  E  L  L  G  S  Q  G  Y  W  F  L  L  L  W  S  *  F  L  I  G  G  M   : G  S  *  S  Q  S  M  D  S  C  T  S  S  *  Y  P  C  *  S  D  F  S  L  T  R  L  Q  L  L  S  K  Q  S  R  K  V  Y  R  S  L  E  I  S  H  K  L  S  S  S  F  Y  D  F  P  S  T  S  N  E  N  S  R :   G  E  K  S  S  G  R  R  W  I  R  K  M  S  Y  N  I  Y  T  Q  F  :  I  T  G  W  I  E  Q  I  D  D  F  L  M  *  I  L  I  Y  T  R  S  C  S  Q  F  R  *  *  S  Q  V  S  Y  P  V  E  G  L  *  I  V  F  H  K  K  K   </first_frame>
            <second_frame>  K  T  F  S  *  P  N  N  K  K  E  A  M  L  S  S  K  R  V  H  P  Y  H  L  L  P  I  G  T  K  I  F  I  F  P  C  L  *  D  Q  K  T  Q  P  H  H  S  K  L  N  K  N  G  S  S  K  L  L  L  P  P  N  Y  L  Y  S  H  T  H  I  S  R  F  F  K  Q  S  N  P  I  V  N  S  N  T  I  Q  A  E  I  C  E  I  V  *  W  G  G  C  *  W  G  L  C  C  *  P  A  H  Y  H  Y  *  A  *  E  V  L  G  *  G  C  G  S  S  H  L  *  *  F  Y  M  E  *  G  I  Y  G  S  H  E  E  V  Y  S  G  S  S  R  K  C  P  C  C  C  C  K   : G  R  D  I  R  I  S  *  L  K  Q  S  H  E  S  *  Q  :  F  G  S  *  L  D  Q  G  A  N  C  P  F  T  T  C  S  R  T  R  S  R  K  Y  S   : S  W  F  Y  C  I  S  K  M  A  A  S  T  N  T  T  R  A  G  E  M  G  Q  S  C  Q  G  C  N  W  G  Q   : *  R  D  V  E  G  N  K  T  S  S  R  G  S  K  G  Y  G  C  S  V  K  G  T  V  S  *   : V  K  E  *  I  A  A  P  H  S  W  D  W  W  C  W  C  D  F  S  L  Y  L  L  F  S  *  N  N  S  K  :  L  H  C  W  V  D  W  F  F  D  V  H  A  Y  A  W  K  Q  C  G  F  Y  A  V  R  W  T  Q  S  T  Y  *  :  G  S  C  W  A  A  K  A  I  G  S  C  Y  F  G  H  D  F  *  S  V  E  W  :  D  P  S  P  R  V  W  I  H  A  P  R  V  D  T  H  A  S  R  I  F  H  L  Q  D  C  N  F  C  P  S  N  R  G  R  C  I  D  H  W  K  *  V  T  S  L  A  L  V  F  M  I  F  H  Q  P  L  M  K  I  V   : E  E  K  K  V  Q  E  D  V  G  F  E  K  *  A  T  T  S  I  L  N  L :   S  L  D  G  L  N  K  S  M  I  S  S  C  K  F  L  Y  I  L  D  R  A  L  S  F  V  D  N  L  K  F  L  I  P  L  K  V  Y  E  S  F  S  I  K  K  K  </second_frame>
            <third_frame>   K  L  F  H  S  Q  T  I  K  R  K  Q  C  Y  H  Q  K  G  S  T  L  I  I  Y  Y  Q  L  A  L  R  Y  L  F  S  L  V  Y  K  I  K  K  H  N  P  I  T  P  N  *  T  K  M  G  V  L  S  Y  C  Y  L  P  I  T  S  T  A  T  P  I  S  Q  D  S  S  N  N  P  T  P  L  S  I  P  T  Q  S  K  Q  K  S  V  K  L  S  S  G  V  A  A  N  G  D  Y  A  A  D  P  P  T  T  T  T  K  L  R  K  Y  W  G  E  D  V  D  P  L  T  S  D  D  F  I  W  N  K  E  F  M  G  R  M  K  K  Y  I  Q  D  P  Q  E  N  A  P  A  A  A  V  K  :  E  E  I  S  G  F  L  S  L  N  R  V  M  N  L  D  S :   L  E  V  D  L  T  K  E  L  T  A  P  S  Q  P  V  L  E  P  E  V  E  N  T  Q  :  A  G  F  T  A  S  Q  K  W  R  P  A  P  T  R  R  E  Q  E  K  W  G  K  A  A  K  A  A  T  G  G  S  :  D  V  M  L  R  E  I  K  R  P  Q  G  D  P  K  V  M  A  A  Q  S  R  E  Q  Y  L  K  :  L  K  N  K  L  Q  L  L  T  V  G  I  G  G  V  G  V  I  S  A  Y  I  S  Y  S  P  E  I  T  V  S :   Y  T  A  G  L  I  G  S  L  M  Y  M  R  M  L  G  N  S  V  D  S  M  Q  S  D  G  P  R  A  L  I  K :   G  A  V  G  Q  P  R  L  L  V  P  V  T  L  V  M  I  F  N  R  W  N  G :   I  L  V  P  E  Y  G  F  M  H  L  E  L  I  P  M  L  V  G  F  F  T  Y  K  I  A  T  F  V  Q  A  I  E  E  G  V  S  I  I  G  N  K  S  Q  A  *  L  *  F  L  *  F  S  I  N  L  *  *  K  *  *  :  R  R  K  K  F  R  K  T  L  D  S  K  N  E  L  Q  H  L  Y  S  I   : Y  H  W  M  D  *  T  N  R  *  F  P  H  V  N  S  Y  I  Y  *  I  V  L  S  V  S  L  I  I  S  S  F  L  S  R  *  R  F  M  N  R  F  P  *  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0076O09.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8143" stop="7820"/>
                    <exon start="6668" stop="6619"/>
                    <exon start="6538" stop="6463"/>
                    <exon start="6373" stop="6278"/>
                    <exon start="6139" stop="6059"/>
                    <exon start="5960" stop="5869"/>
                    <exon start="5445" stop="5350"/>
                    <exon start="4868" stop="4800"/>
                    <exon start="4411" stop="4273"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1020</number_coding_nucleotides>
                  <number_encoded_amino_acids>340</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKMGVLSYCYLPITSTATPISQDSSNNPTPLSIPTQSKQKSVKLSSGVAANGDYAADPPTTTTKLRKYWGEDVDPLTSDDFIWNKEFMGRMKKYIQDPQENAPAAAVKEEISGFLSLNRVMNLDSLEVDLTKELTAPSQPVLEPEVENTQAGFTASQKWRPAPTRREQEKWGKAAKAATGGSDVMLREIKRPQGDPKVMAAQSREQYLKLKNKLQLLTVGIGGVGVISAYISYSPEITVSYTAGLIGSLMYMRMLGNSVDSMQSDGPRALIKGAVGQPRLLVPVTLVMIFNRWNGILVPEYGFMHLELIPMLVGFFTYKIATFVQAIEEGVSIIGNKSQA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="8292" e_stop="7820"/>
            <exon e_start="6668" e_stop="6619"/>
            <exon e_start="6538" e_stop="6463"/>
            <exon e_start="6373" e_stop="6278"/>
            <exon e_start="6139" e_stop="6059"/>
            <exon e_start="5960" e_stop="5869"/>
            <exon e_start="5445" e_stop="5350"/>
            <exon e_start="4868" e_stop="4800"/>
            <exon e_start="4411" e_stop="4228"/>
            <exon e_start="3896" e_stop="3831"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.937"/>
          <exon-intron don_prob="0.997" acc_prob="0.041" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.913" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="8292" e_stop="7820" e_length="473"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6668" e_stop="6619" e_length="50"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.041">
            <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6538" e_stop="6463" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.938" acc_prob="0.994">
            <gDNA_intron_boundary i_start="6462" i_stop="6374" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6373" e_stop="6278" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.983">
            <gDNA_intron_boundary i_start="6277" i_stop="6140" i_length="138"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6139" e_stop="6059" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="6058" i_stop="5961" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="5960" e_stop="5869" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="5868" i_stop="5446" i_length="423"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="5445" e_stop="5350" e_length="96"/>
          </exon>
          <intron i_serial="7" don_prob="0.955" acc_prob="0.939">
            <gDNA_intron_boundary i_start="5349" i_stop="4869" i_length="481"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="4868" e_stop="4800" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.913" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4799" i_stop="4412" i_length="388"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="4411" e_stop="4228" e_length="184"/>
          </exon>
          <intron i_serial="9" don_prob="0.975" acc_prob="0.987">
            <gDNA_intron_boundary i_start="4227" i_stop="3897" i_length="331"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="3896" e_stop="3831" e_length="66"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8292" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8292" stop="7820"/>
              <exon start="6668" stop="6619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8263" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8201" stop="7907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8194" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8194" stop="7956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8170" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8170" stop="7879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8138" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8138" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8137" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8136" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8135" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5350"/>
              <exon start="4868" stop="4819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8134" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8134" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8130" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8130" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8130" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8128" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5350"/>
              <exon start="4868" stop="4811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8125" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8124" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5350"/>
              <exon start="4868" stop="4826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8122" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8122" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8117" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8116" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8108" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8106" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7981" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6367" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5350"/>
              <exon start="4868" stop="4800"/>
              <exon start="4411" stop="4326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6293" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5350"/>
              <exon start="4868" stop="4800"/>
              <exon start="4411" stop="4228"/>
              <exon start="3896" stop="3831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6293" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5350"/>
              <exon start="4868" stop="4800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6293" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5350"/>
              <exon start="4868" stop="4835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370518" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAACTTTTTCATAGCCAAACAATAAAAAGGAAGCAATGTTATCATCAAAAAGGGTCCACCCTTATCATTTACTACCAATTGGCACTAAGATATTTATTTTCCCTTGTCTATAAGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG : GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG : TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA : GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT : GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG : TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG : TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAA : GGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGG : GATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAG : AGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCAATTTAT</gDNA_template>
            <first_frame> Q  N  F  F  I  A  K  Q  *  K  G  S  N  V  I  I  K  K  G  P  P  L  S  F  T  T  N  W  H  *  D  I  Y  F  P  L  S  I  R  S  K  N  T  T  P  S  L  Q  I  E  Q  K  W  E  F  *  A  T  A  T  S  Q  L  P  L  Q  P  H  P  Y  L  K  I  L  Q  T  I  Q  P  H  C  Q  F  Q  H  N  P  S  R  N  L  *  N  C  L  V  G  W  L  L  M  G  T  M  L  L  T  R  P  L  P  L  L  S  L  G  S  T  G  V  R  M  W  I  L  S  P  L  M  I  L  Y  G  I  R  N  L  W  V  A  *  R  S  I  F  R  I  L  K  K  M  P  L  L  L  L  *  R :   K  R  Y  Q  D  F  L  A  *  T  E  S  *  I  L  T   : V  W  K  L  T  *  P  R  S  *  L  P  L  H  N  L  F  *  N  Q  K  S  K  I  L  K :   L  V  L  L  H  L  K  N  G  G  Q  H  Q  H  D  A  S  R  R  N  G  A  K  L  P  R  L  Q  L  G  A  V :   T  *  C  *  G  K  *  N  V  L  K  G  I  Q  R  L  W  L  L  S  Q  G  N  S  I  L  S :   *  R  I  N  C  S  S  S  Q  L  G  L  V  V  L  V  *  F  Q  L  I  S  L  I  L  L  K  *  Q  *   : V  T  L  L  G  *  L  V  L  *  C  T  C  V  C  L  E  T  V  W  I  L  C  S  Q  M  D  P  E  H  L  L   : R  E  L  L  G  S  Q  G  Y  W  F  L  L  L  W  S  *  F  L  I  G  G  M   : G  S  *  S  Q  S  M  D  S  C  T  S  S  *  Y  P  C  *  S  D  F  S  L  T  R  L  Q  L  L  S  K  Q  S  R  K  V  Y  R  S  L  E  I  S  H  K  L  S  S  S  F  Y  D  F  P  S  T  S  N  E  N  S  R :   G  E  K  S  S  G  R  R  W  I  R  K  M  S  Y  N  I  Y  T  Q  F   </first_frame>
            <second_frame>  K  T  F  S  *  P  N  N  K  K  E  A  M  L  S  S  K  R  V  H  P  Y  H  L  L  P  I  G  T  K  I  F  I  F  P  C  L  *  D  Q  K  T  Q  P  H  H  S  K  L  N  K  N  G  S  S  K  L  L  L  P  P  N  Y  L  Y  S  H  T  H  I  S  R  F  F  K  Q  S  N  P  I  V  N  S  N  T  I  Q  A  E  I  C  E  I  V  *  W  G  G  C  *  W  G  L  C  C  *  P  A  H  Y  H  Y  *  A  *  E  V  L  G  *  G  C  G  S  S  H  L  *  *  F  Y  M  E  *  G  I  Y  G  S  H  E  E  V  Y  S  G  S  S  R  K  C  P  C  C  C  C  K   : G  R  D  I  R  I  S  *  L  K  Q  S  H  E  S  *  Q  :  F  G  S  *  L  D  Q  G  A  N  C  P  F  T  T  C  S  R  T  R  S  R  K  Y  S   : S  W  F  Y  C  I  S  K  M  A  A  S  T  N  T  T  R  A  G  E  M  G  Q  S  C  Q  G  C  N  W  G  Q   : *  R  D  V  E  G  N  K  T  S  S  R  G  S  K  G  Y  G  C  S  V  K  G  T  V  S  *   : V  K  E  *  I  A  A  P  H  S  W  D  W  W  C  W  C  D  F  S  L  Y  L  L  F  S  *  N  N  S  K  :  L  H  C  W  V  D  W  F  F  D  V  H  A  Y  A  W  K  Q  C  G  F  Y  A  V  R  W  T  Q  S  T  Y  *  :  G  S  C  W  A  A  K  A  I  G  S  C  Y  F  G  H  D  F  *  S  V  E  W  :  D  P  S  P  R  V  W  I  H  A  P  R  V  D  T  H  A  S  R  I  F  H  L  Q  D  C  N  F  C  P  S  N  R  G  R  C  I  D  H  W  K  *  V  T  S  L  A  L  V  F  M  I  F  H  Q  P  L  M  K  I  V   : E  E  K  K  V  Q  E  D  V  G  F  E  K  *  A  T  T  S  I  L  N  L  </second_frame>
            <third_frame>   K  L  F  H  S  Q  T  I  K  R  K  Q  C  Y  H  Q  K  G  S  T  L  I  I  Y  Y  Q  L  A  L  R  Y  L  F  S  L  V  Y  K  I  K  K  H  N  P  I  T  P  N  *  T  K  M  G  V  L  S  Y  C  Y  L  P  I  T  S  T  A  T  P  I  S  Q  D  S  S  N  N  P  T  P  L  S  I  P  T  Q  S  K  Q  K  S  V  K  L  S  S  G  V  A  A  N  G  D  Y  A  A  D  P  P  T  T  T  T  K  L  R  K  Y  W  G  E  D  V  D  P  L  T  S  D  D  F  I  W  N  K  E  F  M  G  R  M  K  K  Y  I  Q  D  P  Q  E  N  A  P  A  A  A  V  K  :  E  E  I  S  G  F  L  S  L  N  R  V  M  N  L  D  S :   L  E  V  D  L  T  K  E  L  T  A  P  S  Q  P  V  L  E  P  E  V  E  N  T  Q  :  A  G  F  T  A  S  Q  K  W  R  P  A  P  T  R  R  E  Q  E  K  W  G  K  A  A  K  A  A  T  G  G  S  :  D  V  M  L  R  E  I  K  R  P  Q  G  D  P  K  V  M  A  A  Q  S  R  E  Q  Y  L  K  :  L  K  N  K  L  Q  L  L  T  V  G  I  G  G  V  G  V  I  S  A  Y  I  S  Y  S  P  E  I  T  V  S :   Y  T  A  G  L  I  G  S  L  M  Y  M  R  M  L  G  N  S  V  D  S  M  Q  S  D  G  P  R  A  L  I  K :   G  A  V  G  Q  P  R  L  L  V  P  V  T  L  V  M  I  F  N  R  W  N  G :   I  L  V  P  E  Y  G  F  M  H  L  E  L  I  P  M  L  V  G  F  F  T  Y  K  I  A  T  F  V  Q  A  I  E  E  G  V  S  I  I  G  N  K  S  Q  A  *  L  *  F  L  *  F  S  I  N  L  *  *  K  *  *  :  R  R  K  K  F  R  K  T  L  D  S  K  N  E  L  Q  H  L  Y  S  I  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0076O09.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8143" stop="7820"/>
                    <exon start="6668" stop="6619"/>
                    <exon start="6538" stop="6463"/>
                    <exon start="6373" stop="6278"/>
                    <exon start="6139" stop="6059"/>
                    <exon start="5960" stop="5869"/>
                    <exon start="5445" stop="5350"/>
                    <exon start="4868" stop="4800"/>
                    <exon start="4411" stop="4273"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1020</number_coding_nucleotides>
                  <number_encoded_amino_acids>340</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKMGVLSYCYLPITSTATPISQDSSNNPTPLSIPTQSKQKSVKLSSGVAANGDYAADPPTTTTKLRKYWGEDVDPLTSDDFIWNKEFMGRMKKYIQDPQENAPAAAVKEEISGFLSLNRVMNLDSLEVDLTKELTAPSQPVLEPEVENTQAGFTASQKWRPAPTRREQEKWGKAAKAATGGSDVMLREIKRPQGDPKVMAAQSREQYLKLKNKLQLLTVGIGGVGVISAYISYSPEITVSYTAGLIGSLMYMRMLGNSVDSMQSDGPRALIKGAVGQPRLLVPVTLVMIFNRWNGILVPEYGFMHLELIPMLVGFFTYKIATFVQAIEEGVSIIGNKSQA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="8292" e_stop="7820"/>
            <exon e_start="6668" e_stop="6619"/>
            <exon e_start="6538" e_stop="6463"/>
            <exon e_start="6373" e_stop="6059"/>
            <exon e_start="5960" e_stop="5869"/>
            <exon e_start="5445" e_stop="5350"/>
            <exon e_start="4868" e_stop="4800"/>
            <exon e_start="4411" e_stop="4228"/>
            <exon e_start="3896" e_stop="3833"/>
            <exon e_start="2496" e_stop="2357"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.937"/>
          <exon-intron don_prob="0.997" acc_prob="0.041" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="0.997"/>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.913" acc_prob="0.999" e_score="0.986"/>
          <exon-intron don_prob="0.975" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="8292" e_stop="7820" e_length="473"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6668" e_stop="6619" e_length="50"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.041">
            <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6538" e_stop="6463" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.938" acc_prob="0.994">
            <gDNA_intron_boundary i_start="6462" i_stop="6374" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="6373" e_stop="6059" e_length="315"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="6058" i_stop="5961" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5960" e_stop="5869" e_length="92"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="5868" i_stop="5446" i_length="423"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="5445" e_stop="5350" e_length="96"/>
          </exon>
          <intron i_serial="6" don_prob="0.955" acc_prob="0.939">
            <gDNA_intron_boundary i_start="5349" i_stop="4869" i_length="481"/>
          </intron>
          <exon e_serial="7" e_score="0.986">
            <gDNA_exon_boundary e_start="4868" e_stop="4800" e_length="69"/>
          </exon>
          <intron i_serial="7" don_prob="0.913" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4799" i_stop="4412" i_length="388"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="4411" e_stop="4228" e_length="184"/>
          </exon>
          <intron i_serial="8" don_prob="0.975" acc_prob="0.987">
            <gDNA_intron_boundary i_start="4227" i_stop="3897" i_length="331"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="3896" e_stop="3833" e_length="64"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3832" i_stop="2497" i_length="1336"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="2496" e_stop="2357" e_length="140"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8292" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8292" stop="7820"/>
              <exon start="6668" stop="6619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8263" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8201" stop="7907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8194" stop="7956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8170" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8170" stop="7879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8138" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8134" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8134" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8134" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8130" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8130" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8122" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8122" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6373" stop="6330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8106" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6128" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5350"/>
              <exon start="4868" stop="4800"/>
              <exon start="4411" stop="4228"/>
              <exon start="3896" stop="3833"/>
              <exon start="2496" stop="2357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370517" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAACTTTTTCATAGCCAAACAATAAAAAGGAAGCAATGTTATCATCAAAAAGGGTCCACCCTTATCATTTACTACCAATTGGCACTAAGATATTTATTTTCCCTTGTCTATAAGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG : GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG : TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA : GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG : TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG : TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAA : GGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGG : GATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAG : AGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCAATTT : ATCACTGGATGGATTGAACAAATCGATGATTTCCTCATGTAAATTCTTATATATACTAGATCGTGCTCTCAGTTTCGTTGATAATCTCAAGTTTCTTATCCCGTTGAAGGTTTATGAATCGTTTTCCATAAAAAAAAAAA</gDNA_template>
            <first_frame> Q  N  F  F  I  A  K  Q  *  K  G  S  N  V  I  I  K  K  G  P  P  L  S  F  T  T  N  W  H  *  D  I  Y  F  P  L  S  I  R  S  K  N  T  T  P  S  L  Q  I  E  Q  K  W  E  F  *  A  T  A  T  S  Q  L  P  L  Q  P  H  P  Y  L  K  I  L  Q  T  I  Q  P  H  C  Q  F  Q  H  N  P  S  R  N  L  *  N  C  L  V  G  W  L  L  M  G  T  M  L  L  T  R  P  L  P  L  L  S  L  G  S  T  G  V  R  M  W  I  L  S  P  L  M  I  L  Y  G  I  R  N  L  W  V  A  *  R  S  I  F  R  I  L  K  K  M  P  L  L  L  L  *  R :   K  R  Y  Q  D  F  L  A  *  T  E  S  *  I  L  T   : V  W  K  L  T  *  P  R  S  *  L  P  L  H  N  L  F  *  N  Q  K  S  K  I  L  K :   L  V  L  L  H  L  K  N  G  G  Q  H  Q  H  D  A  S  R  R  N  G  A  K  L  P  R  L  Q  L  G  A  V  Y  V  I  E  A  C  N  *  F  I  A  C  N  L  I  Y  N  I  S  L  L  T  S  S  L  T  N  K  I  E  K  Y  G  S  L  S  C  S  S  E  I  F  L  S  S  R  T  *  C  *  G  K  *  N  V  L  K  G  I  Q  R  L  W  L  L  S  Q  G  N  S  I  L  S :   *  R  I  N  C  S  S  S  Q  L  G  L  V  V  L  V  *  F  Q  L  I  S  L  I  L  L  K  *  Q  *   : V  T  L  L  G  *  L  V  L  *  C  T  C  V  C  L  E  T  V  W  I  L  C  S  Q  M  D  P  E  H  L  L   : R  E  L  L  G  S  Q  G  Y  W  F  L  L  L  W  S  *  F  L  I  G  G  M   : G  S  *  S  Q  S  M  D  S  C  T  S  S  *  Y  P  C  *  S  D  F  S  L  T  R  L  Q  L  L  S  K  Q  S  R  K  V  Y  R  S  L  E  I  S  H  K  L  S  S  S  F  Y  D  F  P  S  T  S  N  E  N  S  R :   G  E  K  S  S  G  R  R  W  I  R  K  M  S  Y  N  I  Y  T  Q  F  :  I  T  G  W  I  E  Q  I  D  D  F  L  M  *  I  L  I  Y  T  R  S  C  S  Q  F  R  *  *  S  Q  V  S  Y  P  V  E  G  L  *  I  V  F  H  K  K  K   </first_frame>
            <second_frame>  K  T  F  S  *  P  N  N  K  K  E  A  M  L  S  S  K  R  V  H  P  Y  H  L  L  P  I  G  T  K  I  F  I  F  P  C  L  *  D  Q  K  T  Q  P  H  H  S  K  L  N  K  N  G  S  S  K  L  L  L  P  P  N  Y  L  Y  S  H  T  H  I  S  R  F  F  K  Q  S  N  P  I  V  N  S  N  T  I  Q  A  E  I  C  E  I  V  *  W  G  G  C  *  W  G  L  C  C  *  P  A  H  Y  H  Y  *  A  *  E  V  L  G  *  G  C  G  S  S  H  L  *  *  F  Y  M  E  *  G  I  Y  G  S  H  E  E  V  Y  S  G  S  S  R  K  C  P  C  C  C  C  K   : G  R  D  I  R  I  S  *  L  K  Q  S  H  E  S  *  Q  :  F  G  S  *  L  D  Q  G  A  N  C  P  F  T  T  C  S  R  T  R  S  R  K  Y  S   : S  W  F  Y  C  I  S  K  M  A  A  S  T  N  T  T  R  A  G  E  M  G  Q  S  C  Q  G  C  N  W  G  Q  C  T  S  L  K  L  A  I  S  S  L  L  V  T  *  F  I  I  F  L  C  S  P  R  L  *  L  I  R  *  R  N  M  V  L  *  V  V  V  P  K  F  F  Y  H  P  G  R  D  V  E  G  N  K  T  S  S  R  G  S  K  G  Y  G  C  S  V  K  G  T  V  S  *   : V  K  E  *  I  A  A  P  H  S  W  D  W  W  C  W  C  D  F  S  L  Y  L  L  F  S  *  N  N  S  K  :  L  H  C  W  V  D  W  F  F  D  V  H  A  Y  A  W  K  Q  C  G  F  Y  A  V  R  W  T  Q  S  T  Y  *  :  G  S  C  W  A  A  K  A  I  G  S  C  Y  F  G  H  D  F  *  S  V  E  W  :  D  P  S  P  R  V  W  I  H  A  P  R  V  D  T  H  A  S  R  I  F  H  L  Q  D  C  N  F  C  P  S  N  R  G  R  C  I  D  H  W  K  *  V  T  S  L  A  L  V  F  M  I  F  H  Q  P  L  M  K  I  V   : E  E  K  K  V  Q  E  D  V  G  F  E  K  *  A  T  T  S  I  L  N  L :   S  L  D  G  L  N  K  S  M  I  S  S  C  K  F  L  Y  I  L  D  R  A  L  S  F  V  D  N  L  K  F  L  I  P  L  K  V  Y  E  S  F  S  I  K  K  K  </second_frame>
            <third_frame>   K  L  F  H  S  Q  T  I  K  R  K  Q  C  Y  H  Q  K  G  S  T  L  I  I  Y  Y  Q  L  A  L  R  Y  L  F  S  L  V  Y  K  I  K  K  H  N  P  I  T  P  N  *  T  K  M  G  V  L  S  Y  C  Y  L  P  I  T  S  T  A  T  P  I  S  Q  D  S  S  N  N  P  T  P  L  S  I  P  T  Q  S  K  Q  K  S  V  K  L  S  S  G  V  A  A  N  G  D  Y  A  A  D  P  P  T  T  T  T  K  L  R  K  Y  W  G  E  D  V  D  P  L  T  S  D  D  F  I  W  N  K  E  F  M  G  R  M  K  K  Y  I  Q  D  P  Q  E  N  A  P  A  A  A  V  K  :  E  E  I  S  G  F  L  S  L  N  R  V  M  N  L  D  S :   L  E  V  D  L  T  K  E  L  T  A  P  S  Q  P  V  L  E  P  E  V  E  N  T  Q  :  A  G  F  T  A  S  Q  K  W  R  P  A  P  T  R  R  E  Q  E  K  W  G  K  A  A  K  A  A  T  G  G  S  V  R  H  *  S  L  Q  L  V  H  C  L  *  L  N  L  *  Y  F  F  A  H  L  V  S  N  *  *  D  R  E  I  W  F  S  K  L  *  F  R  N  F  F  I  I  Q  D  V  M  L  R  E  I  K  R  P  Q  G  D  P  K  V  M  A  A  Q  S  R  E  Q  Y  L  K  :  L  K  N  K  L  Q  L  L  T  V  G  I  G  G  V  G  V  I  S  A  Y  I  S  Y  S  P  E  I  T  V  S :   Y  T  A  G  L  I  G  S  L  M  Y  M  R  M  L  G  N  S  V  D  S  M  Q  S  D  G  P  R  A  L  I  K :   G  A  V  G  Q  P  R  L  L  V  P  V  T  L  V  M  I  F  N  R  W  N  G :   I  L  V  P  E  Y  G  F  M  H  L  E  L  I  P  M  L  V  G  F  F  T  Y  K  I  A  T  F  V  Q  A  I  E  E  G  V  S  I  I  G  N  K  S  Q  A  *  L  *  F  L  *  F  S  I  N  L  *  *  K  *  *  :  R  R  K  K  F  R  K  T  L  D  S  K  N  E  L  Q  H  L  Y  S  I   : Y  H  W  M  D  *  T  N  R  *  F  P  H  V  N  S  Y  I  Y  *  I  V  L  S  V  S  L  I  I  S  S  F  L  S  R  *  R  F  M  N  R  F  P  *  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0076O09.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8143" stop="7820"/>
                    <exon start="6668" stop="6619"/>
                    <exon start="6538" stop="6463"/>
                    <exon start="6373" stop="6266"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKMGVLSYCYLPITSTATPISQDSSNNPTPLSIPTQSKQKSVKLSSGVAANGDYAADPPTTTTKLRKYWGEDVDPLTSDDFIWNKEFMGRMKKYIQDPQENAPAAAVKEEISGFLSLNRVMNLDSLEVDLTKELTAPSQPVLEPEVENTQAGFTASQKWRPAPTRREQEKWGKAAKAATGGSVRH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0076O09.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6163" stop="6059"/>
                    <exon start="5960" stop="5869"/>
                    <exon start="5445" stop="5350"/>
                    <exon start="4868" stop="4800"/>
                    <exon start="4411" stop="4273"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRNFFIIQDVMLREIKRPQGDPKVMAAQSREQYLKLKNKLQLLTVGIGGVGVISAYISYSPEITVSYTAGLIGSLMYMRMLGNSVDSMQSDGPRALIKGAVGQPRLLVPVTLVMIFNRWNGILVPEYGFMHLELIPMLVGFFTYKIATFVQAIEEGVSIIGNKSQA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="8292" e_stop="7820"/>
            <exon e_start="6668" e_stop="6619"/>
            <exon e_start="6538" e_stop="6463"/>
            <exon e_start="6339" e_stop="6278"/>
            <exon e_start="6139" e_stop="6059"/>
            <exon e_start="5960" e_stop="5869"/>
            <exon e_start="5445" e_stop="5350"/>
            <exon e_start="4868" e_stop="4800"/>
            <exon e_start="4411" e_stop="4228"/>
            <exon e_start="3896" e_stop="3837"/>
            <exon e_start="2500" e_stop="2281"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.932"/>
          <exon-intron don_prob="0.997" acc_prob="0.041" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.913" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="8292" e_stop="7820" e_length="473"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7819" i_stop="6669" i_length="1151"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6668" e_stop="6619" e_length="50"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.041">
            <gDNA_intron_boundary i_start="6618" i_stop="6539" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6538" e_stop="6463" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.938" acc_prob="0.000">
            <gDNA_intron_boundary i_start="6462" i_stop="6340" i_length="123"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6339" e_stop="6278" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.983">
            <gDNA_intron_boundary i_start="6277" i_stop="6140" i_length="138"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6139" e_stop="6059" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="6058" i_stop="5961" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="5960" e_stop="5869" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="5868" i_stop="5446" i_length="423"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="5445" e_stop="5350" e_length="96"/>
          </exon>
          <intron i_serial="7" don_prob="0.955" acc_prob="0.939">
            <gDNA_intron_boundary i_start="5349" i_stop="4869" i_length="481"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="4868" e_stop="4800" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.913" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4799" i_stop="4412" i_length="388"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="4411" e_stop="4228" e_length="184"/>
          </exon>
          <intron i_serial="9" don_prob="0.975" acc_prob="0.987">
            <gDNA_intron_boundary i_start="4227" i_stop="3897" i_length="331"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="3896" e_stop="3837" e_length="60"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3836" i_stop="2501" i_length="1336"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="2500" e_stop="2281" e_length="220"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8292" stop="7820"/>
              <exon start="6668" stop="6619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8201" stop="7907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8194" stop="7956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8181" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
              <exon start="6339" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5350"/>
              <exon start="4868" stop="4811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8170" stop="7879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8130" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8106" stop="7820"/>
              <exon start="6668" stop="6619"/>
              <exon start="6538" stop="6463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6293" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5350"/>
              <exon start="4868" stop="4800"/>
              <exon start="4411" stop="4228"/>
              <exon start="3896" stop="3837"/>
              <exon start="2500" stop="2440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6293" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5350"/>
              <exon start="4868" stop="4800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6293" stop="6278"/>
              <exon start="6139" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5350"/>
              <exon start="4868" stop="4835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6063" stop="6059"/>
              <exon start="5960" stop="5869"/>
              <exon start="5445" stop="5350"/>
              <exon start="4868" stop="4800"/>
              <exon start="4411" stop="4228"/>
              <exon start="3896" stop="3837"/>
              <exon start="2500" stop="2459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5445" stop="5350"/>
              <exon start="4868" stop="4800"/>
              <exon start="4411" stop="4228"/>
              <exon start="3896" stop="3837"/>
              <exon start="2500" stop="2281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372627" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4835" stop="4800"/>
              <exon start="4411" stop="4228"/>
              <exon start="3896" stop="3837"/>
              <exon start="2500" stop="2388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282688" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAACTTTTTCATAGCCAAACAATAAAAAGGAAGCAATGTTATCATCAAAAAGGGTCCACCCTTATCATTTACTACCAATTGGCACTAAGATATTTATTTTCCCTTGTCTATAAGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG : GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG : TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA : CACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT : GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG : TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG : TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAA : GGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGG : GATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAG : AGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCA : ATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCATGTAAATTCTTATATATACTAGATCGTGCTCTCAGTTTCGTTGATAATCTCAAGTTTCTTATCCCGTTGAAGGTTTATGAATCGTTTTCCATAAAAAAAAAAAAGAGTGTAAATTCTTCTAGTTAATTACGATTATCAGGAGTTTCCATTTTGTGCCACTTTCTATTATACAAGAGCAA</gDNA_template>
            <first_frame> Q  N  F  F  I  A  K  Q  *  K  G  S  N  V  I  I  K  K  G  P  P  L  S  F  T  T  N  W  H  *  D  I  Y  F  P  L  S  I  R  S  K  N  T  T  P  S  L  Q  I  E  Q  K  W  E  F  *  A  T  A  T  S  Q  L  P  L  Q  P  H  P  Y  L  K  I  L  Q  T  I  Q  P  H  C  Q  F  Q  H  N  P  S  R  N  L  *  N  C  L  V  G  W  L  L  M  G  T  M  L  L  T  R  P  L  P  L  L  S  L  G  S  T  G  V  R  M  W  I  L  S  P  L  M  I  L  Y  G  I  R  N  L  W  V  A  *  R  S  I  F  R  I  L  K  K  M  P  L  L  L  L  *  R :   K  R  Y  Q  D  F  L  A  *  T  E  S  *  I  L  T   : V  W  K  L  T  *  P  R  S  *  L  P  L  H  N  L  F  *  N  Q  K  S  K  I  L  N :   T  N  T  T  R  A  G  E  M  G  Q  S  C  Q  G  C  N  W  G  Q   : *  R  D  V  E  G  N  K  T  S  S  R  G  S  K  G  Y  G  C  S  V  K  G  T  V  S  *   : V  K  E  *  I  A  A  P  H  S  W  D  W  W  C  W  C  D  F  S  L  Y  L  L  F  S  *  N  N  S  K  :  L  H  C  W  V  D  W  F  F  D  V  H  A  Y  A  W  K  Q  C  G  F  Y  A  V  R  W  T  Q  S  T  Y  *  :  G  S  C  W  A  A  K  A  I  G  S  C  Y  F  G  H  D  F  *  S  V  E  W  :  D  P  S  P  R  V  W  I  H  A  P  R  V  D  T  H  A  S  R  I  F  H  L  Q  D  C  N  F  C  P  S  N  R  G  R  C  I  D  H  W  K  *  V  T  S  L  A  L  V  F  M  I  F  H  Q  P  L  M  K  I  V   : E  E  K  K  V  Q  E  D  V  G  F  E  K  *  A  T  T  S  I  L   : N  L  S  L  D  G  L  N  K  S  M  I  S  S  C  K  F  L  Y  I  L  D  R  A  L  S  F  V  D  N  L  K  F  L  I  P  L  K  V  Y  E  S  F  S  I  K  K  K  K  S  V  N  S  S  S  *  L  R  L  S  G  V  S  I  L  C  H  F  L  L  Y  K  S   </first_frame>
            <second_frame>  K  T  F  S  *  P  N  N  K  K  E  A  M  L  S  S  K  R  V  H  P  Y  H  L  L  P  I  G  T  K  I  F  I  F  P  C  L  *  D  Q  K  T  Q  P  H  H  S  K  L  N  K  N  G  S  S  K  L  L  L  P  P  N  Y  L  Y  S  H  T  H  I  S  R  F  F  K  Q  S  N  P  I  V  N  S  N  T  I  Q  A  E  I  C  E  I  V  *  W  G  G  C  *  W  G  L  C  C  *  P  A  H  Y  H  Y  *  A  *  E  V  L  G  *  G  C  G  S  S  H  L  *  *  F  Y  M  E  *  G  I  Y  G  S  H  E  E  V  Y  S  G  S  S  R  K  C  P  C  C  C  C  K   : G  R  D  I  R  I  S  *  L  K  Q  S  H  E  S  *  Q  :  F  G  S  *  L  D  Q  G  A  N  C  P  F  T  T  C  S  R  T  R  S  R  K  Y  S   : T  P  T  R  R  E  Q  E  K  W  G  K  A  A  K  A  A  T  G  G  S  :  D  V  M  L  R  E  I  K  R  P  Q  G  D  P  K  V  M  A  A  Q  S  R  E  Q  Y  L  K  :  L  K  N  K  L  Q  L  L  T  V  G  I  G  G  V  G  V  I  S  A  Y  I  S  Y  S  P  E  I  T  V  S :   Y  T  A  G  L  I  G  S  L  M  Y  M  R  M  L  G  N  S  V  D  S  M  Q  S  D  G  P  R  A  L  I  K :   G  A  V  G  Q  P  R  L  L  V  P  V  T  L  V  M  I  F  N  R  W  N  G :   I  L  V  P  E  Y  G  F  M  H  L  E  L  I  P  M  L  V  G  F  F  T  Y  K  I  A  T  F  V  Q  A  I  E  E  G  V  S  I  I  G  N  K  S  Q  A  *  L  *  F  L  *  F  S  I  N  L  *  *  K  *  *  :  R  R  K  K  F  R  K  T  L  D  S  K  N  E  L  Q  H  L  Y  S  :  I  Y  H  W  M  D  *  T  N  R  *  F  P  H  V  N  S  Y  I  Y  *  I  V  L  S  V  S  L  I  I  S  S  F  L  S  R  *  R  F  M  N  R  F  P  *  K  K  K  R  V  *  I  L  L  V  N  Y  D  Y  Q  E  F  P  F  C  A  T  F  Y  Y  T  R  A  </second_frame>
            <third_frame>   K  L  F  H  S  Q  T  I  K  R  K  Q  C  Y  H  Q  K  G  S  T  L  I  I  Y  Y  Q  L  A  L  R  Y  L  F  S  L  V  Y  K  I  K  K  H  N  P  I  T  P  N  *  T  K  M  G  V  L  S  Y  C  Y  L  P  I  T  S  T  A  T  P  I  S  Q  D  S  S  N  N  P  T  P  L  S  I  P  T  Q  S  K  Q  K  S  V  K  L  S  S  G  V  A  A  N  G  D  Y  A  A  D  P  P  T  T  T  T  K  L  R  K  Y  W  G  E  D  V  D  P  L  T  S  D  D  F  I  W  N  K  E  F  M  G  R  M  K  K  Y  I  Q  D  P  Q  E  N  A  P  A  A  A  V  K  :  E  E  I  S  G  F  L  S  L  N  R  V  M  N  L  D  S :   L  E  V  D  L  T  K  E  L  T  A  P  S  Q  P  V  L  E  P  E  V  E  N  T  Q  :  H  Q  H  D  A  S  R  R  N  G  A  K  L  P  R  L  Q  L  G  A  V :   T  *  C  *  G  K  *  N  V  L  K  G  I  Q  R  L  W  L  L  S  Q  G  N  S  I  L  S :   *  R  I  N  C  S  S  S  Q  L  G  L  V  V  L  V  *  F  Q  L  I  S  L  I  L  L  K  *  Q  *   : V  T  L  L  G  *  L  V  L  *  C  T  C  V  C  L  E  T  V  W  I  L  C  S  Q  M  D  P  E  H  L  L   : R  E  L  L  G  S  Q  G  Y  W  F  L  L  L  W  S  *  F  L  I  G  G  M   : G  S  *  S  Q  S  M  D  S  C  T  S  S  *  Y  P  C  *  S  D  F  S  L  T  R  L  Q  L  L  S  K  Q  S  R  K  V  Y  R  S  L  E  I  S  H  K  L  S  S  S  F  Y  D  F  P  S  T  S  N  E  N  S  R :   G  E  K  S  S  G  R  R  W  I  R  K  M  S  Y  N  I  Y  T  Q :   F  I  T  G  W  I  E  Q  I  D  D  F  L  M  *  I  L  I  Y  T  R  S  C  S  Q  F  R  *  *  S  Q  V  S  Y  P  V  E  G  L  *  I  V  F  H  K  K  K  K  E  C  K  F  F  *  L  I  T  I  I  R  S  F  H  F  V  P  L  S  I  I  Q  E  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0076O09.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6526" stop="6463"/>
                    <exon start="6339" stop="6278"/>
                    <exon start="6139" stop="6059"/>
                    <exon start="5960" stop="5869"/>
                    <exon start="5445" stop="5350"/>
                    <exon start="4868" stop="4800"/>
                    <exon start="4411" stop="4273"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDQGANCPFTTCSRTRSRKYSTPTRREQEKWGKAAKAATGGSDVMLREIKRPQGDPKVMAAQSREQYLKLKNKLQLLTVGIGGVGVISAYISYSPEITVSYTAGLIGSLMYMRMLGNSVDSMQSDGPRALIKGAVGQPRLLVPVTLVMIFNRWNGILVPEYGFMHLELIPMLVGFFTYKIATFVQAIEEGVSIIGNKSQA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0076O09.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8143" stop="7820"/>
                    <exon start="6668" stop="6619"/>
                    <exon start="6538" stop="6463"/>
                    <exon start="6339" stop="6278"/>
                    <exon start="6139" stop="6133"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKMGVLSYCYLPITSTATPISQDSSNNPTPLSIPTQSKQKSVKLSSGVAANGDYAADPPTTTTKLRKYWGEDVDPLTSDDFIWNKEFMGRMKKYIQDPQENAPAAAVKEEISGFLSLNRVMNLDSLEVDLTKELTAPSQPVLEPEVENTQHQHDASRRNGAKLPRLQLGAVT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="12822" PGL_stop="10718"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12822" e_stop="12669"/>
            <exon e_start="11217" e_stop="10718"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.935" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12822" e_stop="12669" e_length="154"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.935">
            <gDNA_intron_boundary i_start="12668" i_stop="11218" i_length="1451"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="11217" e_stop="10718" e_length="500"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12822" stop="12669"/>
              <exon start="11217" stop="10718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12699" stop="12669"/>
              <exon start="11217" stop="10750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309276" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGACCCGAGATTTTATTGAACAATTTTTCTCCTTCTTTCCACTCAAAAACTCCATTGAAGCAGCCAAGAGCTTATACTACACAGTAATCAATATATTTGGAAGTGGCGGATCCAGTCTCTCACAAAGCAAGGCAGCCGTTTGTTCTCATCAAG : TGAATCGGAATATTGAGCTTCTTTTTGGATCCAAGAAATGAACTTAGGGAGACTGAAAAATGTGGTAGCTGCTGCAGCGATTGAAGGATTAGCCGAGGTAAGGGCCAAGATATTTGGTCATGTAATTAATCCAACTGGGCAGCGATCTGCTCACAAGGTTTTACGCAAGAAGCTGATCGGTGAAAAGGTCTCACAATGGTACCCACACGATATCATGAAAGATGACCCTCTTGTGATGGCTCGTCAAGAGCAAGAGCGTCTCAGCAAGCTTGAAATGTTGAAACGTCGTGGAAAGGGGCCACCTAAGAAGGGCCAGGGCAAACAGGCTAAGAAACGCAACAAATAGAGATGATAGTCTCACTGGTTTGAAATAAAGGGGTATCTAGGATTACTATTTGCAATTTGATTACTAACTTTTCTCATCAGCCACTTGCTTTCTAGTGAACATCATCTGCATACTCTTCTACAATTTTTTTCCATATAGTTTGGGCTGTTCGAGC</gDNA_template>
            <first_frame> K  T  R  D  F  I  E  Q  F  F  S  F  F  P  L  K  N  S  I  E  A  A  K  S  L  Y  Y  T  V  I  N  I  F  G  S  G  G  S  S  L  S  Q  S  K  A  A  V  C  S  H  Q   : V  N  R  N  I  E  L  L  F  G  S  K  K  *  T  *  G  D  *  K  M  W  *  L  L  Q  R  L  K  D  *  P  R  *  G  P  R  Y  L  V  M  *  L  I  Q  L  G  S  D  L  L  T  R  F  Y  A  R  S  *  S  V  K  R  S  H  N  G  T  H  T  I  S  *  K  M  T  L  L  *  W  L  V  K  S  K  S  V  S  A  S  L  K  C  *  N  V  V  E  R  G  H  L  R  R  A  R  A  N  R  L  R  N  A  T  N  R  D  D  S  L  T  G  L  K  *  R  G  I  *  D  Y  Y  L  Q  F  D  Y  *  L  F  S  S  A  T  C  F  L  V  N  I  I  C  I  L  F  Y  N  F  F  P  Y  S  L  G  C  S  S </first_frame>
            <second_frame>  R  P  E  I  L  L  N  N  F  S  P  S  F  H  S  K  T  P  L  K  Q  P  R  A  Y  T  T  Q  *  S  I  Y  L  E  V  A  D  P  V  S  H  K  A  R  Q  P  F  V  L  I  K  :  *  I  G  I  L  S  F  F  L  D  P  R  N  E  L  R  E  T  E  K  C  G  S  C  C  S  D  *  R  I  S  R  G  K  G  Q  D  I  W  S  C  N  *  S  N  W  A  A  I  C  S  Q  G  F  T  Q  E  A  D  R  *  K  G  L  T  M  V  P  T  R  Y  H  E  R  *  P  S  C  D  G  S  S  R  A  R  A  S  Q  Q  A  *  N  V  E  T  S  W  K  G  A  T  *  E  G  P  G  Q  T  G  *  E  T  Q  Q  I  E  M  I  V  S  L  V  *  N  K  G  V  S  R  I  T  I  C  N  L  I  T  N  F  S  H  Q  P  L  A  F  *  *  T  S  S  A  Y  S  S  T  I  F  F  H  I  V  W  A  V  R   </second_frame>
            <third_frame>   D  P  R  F  Y  *  T  I  F  L  L  L  S  T  Q  K  L  H  *  S  S  Q  E  L  I  L  H  S  N  Q  Y  I  W  K  W  R  I  Q  S  L  T  K  Q  G  S  R  L  F  S  S  S :   E  S  E  Y  *  A  S  F  W  I  Q  E  M  N  L  G  R  L  K  N  V  V  A  A  A  A  I  E  G  L  A  E  V  R  A  K  I  F  G  H  V  I  N  P  T  G  Q  R  S  A  H  K  V  L  R  K  K  L  I  G  E  K  V  S  Q  W  Y  P  H  D  I  M  K  D  D  P  L  V  M  A  R  Q  E  Q  E  R  L  S  K  L  E  M  L  K  R  R  G  K  G  P  P  K  K  G  Q  G  K  Q  A  K  K  R  N  K  *  R  *  *  S  H  W  F  E  I  K  G  Y  L  G  L  L  F  A  I  *  L  L  T  F  L  I  S  H  L  L  S  S  E  H  H  L  H  T  L  L  Q  F  F  S  I  *  F  G  L  F  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0076O09.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11201" stop="10872"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASFWIQEMNLGRLKNVVAAAAIEGLAEVRAKIFGHVINPTGQRSAHKVLRKKLIGEKVSQWYPHDIMKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGKQAKKRNK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0076O09.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12822" stop="12669"/>
                    <exon start="11217" stop="11177"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTRDFIEQFFSFFPLKNSIEAAKSLYYTVINIFGSGGSSLSQSKAAVCSHQVNRNIELLFGSKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="12722" e_stop="12669"/>
            <exon e_start="12034" e_stop="11493"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.854" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12722" e_stop="12669" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.854">
            <gDNA_intron_boundary i_start="12668" i_stop="12035" i_length="634"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="12034" e_stop="11493" e_length="542"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12722" stop="12669"/>
              <exon start="12034" stop="11493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323076" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGTGGCGGATCCAGTCTCTCACAAAGCAAGGCAGCCGTTTGTTCTCATCAAG : GCGATTTAGAAGTTTTTGGGATGATGGAATATACAATGGGAATGAGATTTTGTGATTGAGTCGGGGACTGATGGCGTTATTCAGGAAGCCTTTTCATGATTTTCCTTTTGAGAATTTAGAAGCATGTCTAAGGTTTCAAGCTGAGGTTGTGTCGAGCTTTCTGTTCTGTTTTCCTTTTTAGAGTCTTCCGGTCCATCGTTTGTTTCTATAGTTGGAGAACTTTGTATTCTGGTCATTCCCAGCATACTAATGGAAAAGCATGACCAACGATATCTTGTTGTTCCTGTAAAGCGGAGAATATGCATCTAATTCTTTGTATTTATCTGAGAGCAACTTGTGATATTTTTATCAGAGAAATAGAATGAATGTGATATAGAGGGGACTAATGTGACAATCTGTGTCGACGTTTTGAGTAGGTAATACACAATCTGTGTTGGTTACTTTGATTCTTTTTTTTCTTAAACGGAAGTTTTGTTTGAATTTTGATCATTGTTTGGACCAAATATAAATAGGATGTTATCAATCCGAAATGTGATATAAAC</gDNA_template>
            <first_frame> E  V  A  D  P  V  S  H  K  A  R  Q  P  F  V  L  I  K  :  A  I  *  K  F  L  G  *  W  N  I  Q  W  E  *  D  F  V  I  E  S  G  T  D  G  V  I  Q  E  A  F  S  *  F  S  F  *  E  F  R  S  M  S  K  V  S  S  *  G  C  V  E  L  S  V  L  F  S  F  L  E  S  S  G  P  S  F  V  S  I  V  G  E  L  C  I  L  V  I  P  S  I  L  M  E  K  H  D  Q  R  Y  L  V  V  P  V  K  R  R  I  C  I  *  F  F  V  F  I  *  E  Q  L  V  I  F  L  S  E  K  *  N  E  C  D  I  E  G  T  N  V  T  I  C  V  D  V  L  S  R  *  Y  T  I  C  V  G  Y  F  D  S  F  F  S  *  T  E  V  L  F  E  F  *  S  L  F  G  P  N  I  N  R  M  L  S  I  R  N  V  I  *   </first_frame>
            <second_frame>  K  W  R  I  Q  S  L  T  K  Q  G  S  R  L  F  S  S  R :   R  F  R  S  F  W  D  D  G  I  Y  N  G  N  E  I  L  *  L  S  R  G  L  M  A  L  F  R  K  P  F  H  D  F  P  F  E  N  L  E  A  C  L  R  F  Q  A  E  V  V  S  S  F  L  F  C  F  P  F  *  S  L  P  V  H  R  L  F  L  *  L  E  N  F  V  F  W  S  F  P  A  Y  *  W  K  S  M  T  N  D  I  L  L  F  L  *  S  G  E  Y  A  S  N  S  L  Y  L  S  E  S  N  L  *  Y  F  Y  Q  R  N  R  M  N  V  I  *  R  G  L  M  *  Q  S  V  S  T  F  *  V  G  N  T  Q  S  V  L  V  T  L  I  L  F  F  L  K  R  K  F  C  L  N  F  D  H  C  L  D  Q  I  *  I  G  C  Y  Q  S  E  M  *  Y  K  </second_frame>
            <third_frame>   S  G  G  S  S  L  S  Q  S  K  A  A  V  C  S  H  Q   : G  D  L  E  V  F  G  M  M  E  Y  T  M  G  M  R  F  C  D  *  V  G  D  *  W  R  Y  S  G  S  L  F  M  I  F  L  L  R  I  *  K  H  V  *  G  F  K  L  R  L  C  R  A  F  C  S  V  F  L  F  R  V  F  R  S  I  V  C  F  Y  S  W  R  T  L  Y  S  G  H  S  Q  H  T  N  G  K  A  *  P  T  I  S  C  C  S  C  K  A  E  N  M  H  L  I  L  C  I  Y  L  R  A  T  C  D  I  F  I  R  E  I  E  *  M  *  Y  R  G  D  *  C  D  N  L  C  R  R  F  E  *  V  I  H  N  L  C  W  L  L  *  F  F  F  F  L  N  G  S  F  V  *  I  L  I  I  V  W  T  K  Y  K  *  D  V  I  N  P  K  C  D  I  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0076O09.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="14577" PGL_stop="13904"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14577" e_stop="13904"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="14577" e_stop="13904" e_length="674"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14577" stop="13904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14576" stop="14022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14576" stop="14073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14576" stop="14097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAATTGCAGTTACAATTTTCAAGTCAGCTACTTTAGTTTTTGATCAAATCTGGCTTAATCTTCTCAAGGTTGTTTCTTCCAATTTTCCAGGTTAGCTACTTCTTCAATTCTCCGTCTAACATTTTTTTTTTGAATGTTGTCTGATCCGTGTCTATCTATTTTGGGAGAGCTAGCTCAGATACGAGGGAAACATTCCTATATTCCTTACTGCCATCTTTATATGTAAAAGGATATCTTTCTTGACGTTTGGTTATGATAAATATATTTCTCTAAGTTCTTTTGTTGCAATTTTTGCATTGAAATCAATCTTCTCTTAGGAGTTGGAATTGGAAGTGACCAAGCATATGCGACTCATACCCTATCGCTCTGCTAAGTAGGGCTCTTAACAAAAGGAAGGTAAAATCGATATTGGTTGTCAATTAGAACAGCAAGTCCAAACTTTTATTGTTTTAGGTATATTGGCTCCCTGACAGTACCACAGGATGTTATCTGGAATATTAATAGAAAGGAAATTAACTATTAAGGCCAATTTTTGTTAATGAAAATGAAATATGCAACCATTTCCATTTGAAGTAAATTTTGCTTTTTAGTTTTACAGGTGAAAGCCAAATGAAACTGATCCCAGATGCTGTTCATGACGCGAGTTGCTGCCAAATTTGTAAGTGTTTTTTT</gDNA_template>
            <first_frame> F  N  C  S  Y  N  F  Q  V  S  Y  F  S  F  *  S  N  L  A  *  S  S  Q  G  C  F  F  Q  F  S  R  L  A  T  S  S  I  L  R  L  T  F  F  F  *  M  L  S  D  P  C  L  S  I  L  G  E  L  A  Q  I  R  G  K  H  S  Y  I  P  Y  C  H  L  Y  M  *  K  D  I  F  L  D  V  W  L  *  *  I  Y  F  S  K  F  F  C  C  N  F  C  I  E  I  N  L  L  L  G  V  G  I  G  S  D  Q  A  Y  A  T  H  T  L  S  L  C  *  V  G  L  L  T  K  G  R  *  N  R  Y  W  L  S  I  R  T  A  S  P  N  F  Y  C  F  R  Y  I  G  S  L  T  V  P  Q  D  V  I  W  N  I  N  R  K  E  I  N  Y  *  G  Q  F  L  L  M  K  M  K  Y  A  T  I  S  I  *  S  K  F  C  F  L  V  L  Q  V  K  A  K  *  N  *  S  Q  M  L  F  M  T  R  V  A  A  K  F  V  S  V  F   </first_frame>
            <second_frame>  L  I  A  V  T  I  F  K  S  A  T  L  V  F  D  Q  I  W  L  N  L  L  K  V  V  S  S  N  F  P  G  *  L  L  L  Q  F  S  V  *  H  F  F  F  E  C  C  L  I  R  V  Y  L  F  W  E  S  *  L  R  Y  E  G  N  I  P  I  F  L  T  A  I  F  I  C  K  R  I  S  F  L  T  F  G  Y  D  K  Y  I  S  L  S  S  F  V  A  I  F  A  L  K  S  I  F  S  *  E  L  E  L  E  V  T  K  H  M  R  L  I  P  Y  R  S  A  K  *  G  S  *  Q  K  E  G  K  I  D  I  G  C  Q  L  E  Q  Q  V  Q  T  F  I  V  L  G  I  L  A  P  *  Q  Y  H  R  M  L  S  G  I  L  I  E  R  K  L  T  I  K  A  N  F  C  *  *  K  *  N  M  Q  P  F  P  F  E  V  N  F  A  F  *  F  Y  R  *  K  P  N  E  T  D  P  R  C  C  S  *  R  E  L  L  P  N  L  *  V  F  F  </second_frame>
            <third_frame>   *  L  Q  L  Q  F  S  S  Q  L  L  *  F  L  I  K  S  G  L  I  F  S  R  L  F  L  P  I  F  Q  V  S  Y  F  F  N  S  P  S  N  I  F  F  L  N  V  V  *  S  V  S  I  Y  F  G  R  A  S  S  D  T  R  E  T  F  L  Y  S  L  L  P  S  L  Y  V  K  G  Y  L  S  *  R  L  V  M  I  N  I  F  L  *  V  L  L  L  Q  F  L  H  *  N  Q  S  S  L  R  S  W  N  W  K  *  P  S  I  C  D  S  Y  P  I  A  L  L  S  R  A  L  N  K  R  K  V  K  S  I  L  V  V  N  *  N  S  K  S  K  L  L  L  F  *  V  Y  W  L  P  D  S  T  T  G  C  Y  L  E  Y  *  *  K  G  N  *  L  L  R  P  I  F  V  N  E  N  E  I  C  N  H  F  H  L  K  *  I  L  L  F  S  F  T  G  E  S  Q  M  K  L  I  P  D  A  V  H  D  A  S  C  C  Q  I  C  K  C  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0076O09.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="23473" PGL_stop="22710"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23473" e_stop="22710"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="23473" e_stop="22710" e_length="764"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23473" stop="22710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332589" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAATTTGCAGAAATTCAGCTCCAGTGAAGAGATCCGTCGCCGGTGAGAAATGTCGGATTATTTGCCTCAAGAATTATTGGTTGATATCTTCACAAAACTACCAGTCAAATCAATCCTCCGATGCAGAAGTGTTTGCAAGTCATGGTATTCTCTTCTTACTAGCCCTAGCTTTACCTTCACACATCTCAATCGAAAACGAGATGATCATATGCTGATTAGGAATTATGGTAGAAGCACTCGATTAGATATGTATCCTTTGTTTGGTAACAATGAGAGGTTGGATCCCGACCATTTCTTAGATTTTTCATTTCGTAGAGGTTCCGTTAGTATAGTGGGTAGTGTTAATGGTATTTTGTGCCTCGCCGACACCGACACCGACGCCGACACCGACACCGACGCCGACGCCGATACCGATGCCGACGCCGACTCCGCCATCTTGACCCATTTATATTTTTGTAACCTATCCATCAGAAAGTCGGTAAAACTCCCTGAACCAGTTCGTAGTACCTATCGTTTCACACTGGGGTTTGGGTTTGATTCGGTTACTAATGACTACAAGGTGGTAAGAGTAGTACACGCTATGGGACAATCAAAGCCACATGCTGATCTTTATAAGTTAAGTACTGGTGTTTGGGAAGACATTTCCAATGTCCCTGAGCCTTACATATTAATTTCCATTGAGCCACAGGGCCCACAGGTGTATGTGAACGGCGCTTGTCATTGGATTACTACTAAATTGGAGTTTACACCAGCTCGGAGGAAT</gDNA_template>
            <first_frame> L  I  C  R  N  S  A  P  V  K  R  S  V  A  G  E  K  C  R  I  I  C  L  K  N  Y  W  L  I  S  S  Q  N  Y  Q  S  N  Q  S  S  D  A  E  V  F  A  S  H  G  I  L  F  L  L  A  L  A  L  P  S  H  I  S  I  E  N  E  M  I  I  C  *  L  G  I  M  V  E  A  L  D  *  I  C  I  L  C  L  V  T  M  R  G  W  I  P  T  I  S  *  I  F  H  F  V  E  V  P  L  V  *  W  V  V  L  M  V  F  C  A  S  P  T  P  T  P  T  P  T  P  T  P  T  P  T  P  I  P  M  P  T  P  T  P  P  S  *  P  I  Y  I  F  V  T  Y  P  S  E  S  R  *  N  S  L  N  Q  F  V  V  P  I  V  S  H  W  G  L  G  L  I  R  L  L  M  T  T  R  W  *  E  *  Y  T  L  W  D  N  Q  S  H  M  L  I  F  I  S  *  V  L  V  F  G  K  T  F  P  M  S  L  S  L  T  Y  *  F  P  L  S  H  R  A  H  R  C  M  *  T  A  L  V  I  G  L  L  L  N  W  S  L  H  Q  L  G  G   </first_frame>
            <second_frame>  *  F  A  E  I  Q  L  Q  *  R  D  P  S  P  V  R  N  V  G  L  F  A  S  R  I  I  G  *  Y  L  H  K  T  T  S  Q  I  N  P  P  M  Q  K  C  L  Q  V  M  V  F  S  S  Y  *  P  *  L  Y  L  H  T  S  Q  S  K  T  R  *  S  Y  A  D  *  E  L  W  *  K  H  S  I  R  Y  V  S  F  V  W  *  Q  *  E  V  G  S  R  P  F  L  R  F  F  I  S  *  R  F  R  *  Y  S  G  *  C  *  W  Y  F  V  P  R  R  H  R  H  R  R  R  H  R  H  R  R  R  R  R  Y  R  C  R  R  R  L  R  H  L  D  P  F  I  F  L  *  P  I  H  Q  K  V  G  K  T  P  *  T  S  S  *  Y  L  S  F  H  T  G  V  W  V  *  F  G  Y  *  *  L  Q  G  G  K  S  S  T  R  Y  G  T  I  K  A  T  C  *  S  L  *  V  K  Y  W  C  L  G  R  H  F  Q  C  P  *  A  L  H  I  N  F  H  *  A  T  G  P  T  G  V  C  E  R  R  L  S  L  D  Y  Y  *  I  G  V  Y  T  S  S  E  E  </second_frame>
            <third_frame>   N  L  Q  K  F  S  S  S  E  E  I  R  R  R  *  E  M  S  D  Y  L  P  Q  E  L  L  V  D  I  F  T  K  L  P  V  K  S  I  L  R  C  R  S  V  C  K  S  W  Y  S  L  L  T  S  P  S  F  T  F  T  H  L  N  R  K  R  D  D  H  M  L  I  R  N  Y  G  R  S  T  R  L  D  M  Y  P  L  F  G  N  N  E  R  L  D  P  D  H  F  L  D  F  S  F  R  R  G  S  V  S  I  V  G  S  V  N  G  I  L  C  L  A  D  T  D  T  D  A  D  T  D  T  D  A  D  A  D  T  D  A  D  A  D  S  A  I  L  T  H  L  Y  F  C  N  L  S  I  R  K  S  V  K  L  P  E  P  V  R  S  T  Y  R  F  T  L  G  F  G  F  D  S  V  T  N  D  Y  K  V  V  R  V  V  H  A  M  G  Q  S  K  P  H  A  D  L  Y  K  L  S  T  G  V  W  E  D  I  S  N  V  P  E  P  Y  I  L  I  S  I  E  P  Q  G  P  Q  V  Y  V  N  G  A  C  H  W  I  T  T  K  L  E  F  T  P  A  R  R  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0076O09.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23426" stop="22710"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMSDYLPQELLVDIFTKLPVKSILRCRSVCKSWYSLLTSPSFTFTHLNRKRDDHMLIRNYGRSTRLDMYPLFGNNERLDPDHFLDFSFRRGSVSIVGSVNGILCLADTDTDADTDTDADADTDADADSAILTHLYFCNLSIRKSVKLPEPVRSTYRFTLGFGFDSVTNDYKVVRVVHAMGQSKPHADLYKLSTGVWEDISNVPEPYILISIEPQGPQVYVNGACHWITTKLEFTPARRN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="33572" PGL_stop="34754"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33572" e_stop="33628"/>
            <exon e_start="33752" e_stop="33827"/>
            <exon e_start="34276" e_stop="34754"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.789"/>
          <exon-intron don_prob="0.894" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.789">
            <gDNA_exon_boundary e_start="33572" e_stop="33628" e_length="57"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33629" i_stop="33751" i_length="123"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33752" e_stop="33827" e_length="76"/>
          </exon>
          <intron i_serial="2" don_prob="0.894" acc_prob="0.993">
            <gDNA_intron_boundary i_start="33828" i_stop="34275" i_length="448"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="34276" e_stop="34754" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33572" stop="33628"/>
              <exon start="33752" stop="33827"/>
              <exon start="34276" stop="34754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711490" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGCAGAAAAAGAAACATTTCTAAAGTTCATTAGCAAGAGCTTGAAGATGACAACG : ATGACAGAGATGAGAGTACACATGGATTGTGCCGGATGTGAGAGCAAGGTCAGAAAATCTCTCGAGAAAGTTAAAG : GTGTTGATAATGTAGAAATAGATATGTCTATGCAAAAGGTGACAGTAACAGGATGGGCTGATCAAAAGAAAATACTCAAAACAGTTAGAAGAACTGGTAAAAGAGCTGAAATATGGCAATTTCCTCATAATCCTGAGATGAGAAATAACCCTACTTATGTAACCGATCATTATTATCAACAACAAGGCTGCAGTGGTCCGACCACTTATTATGCCGGAGAACCACCGGCTTCCTCCTATAACTATCGCAAACACGGCTACGATAACTATGGCCGTGCCTATAGTCTTTACAGGGGCAATTCAAACACATTTGGTAGTCGTGTTGGTGATGCTTTTAGTGATGAGAATCCTCGTGGTTGTAATATTATGTAATTGTTGTTTGATGTTGTCGATTATTAAATGTAAGAGCCTGTTTGAATTGACTTCTTTAAAAAAATGTATAATACATAAATATGACTTTAATTTGACGTCAGTTGATAA</gDNA_template>
            <first_frame> E  A  E  K  E  T  F  L  K  F  I  S  K  S  L  K  M  T  T  :  M  T  E  M  R  V  H  M  D  C  A  G  C  E  S  K  V  R  K  S  L  E  K  V  K   : G  V  D  N  V  E  I  D  M  S  M  Q  K  V  T  V  T  G  W  A  D  Q  K  K  I  L  K  T  V  R  R  T  G  K  R  A  E  I  W  Q  F  P  H  N  P  E  M  R  N  N  P  T  Y  V  T  D  H  Y  Y  Q  Q  Q  G  C  S  G  P  T  T  Y  Y  A  G  E  P  P  A  S  S  Y  N  Y  R  K  H  G  Y  D  N  Y  G  R  A  Y  S  L  Y  R  G  N  S  N  T  F  G  S  R  V  G  D  A  F  S  D  E  N  P  R  G  C  N  I  M  *  L  L  F  D  V  V  D  Y  *  M  *  E  P  V  *  I  D  F  F  K  K  M  Y  N  T  *  I  *  L  *  F  D  V  S  *  * </first_frame>
            <second_frame>  K  Q  K  K  K  H  F  *  S  S  L  A  R  A  *  R  *  Q  R :   *  Q  R  *  E  Y  T  W  I  V  P  D  V  R  A  R  S  E  N  L  S  R  K  L  K  :  V  L  I  M  *  K  *  I  C  L  C  K  R  *  Q  *  Q  D  G  L  I  K  R  K  Y  S  K  Q  L  E  E  L  V  K  E  L  K  Y  G  N  F  L  I  I  L  R  *  E  I  T  L  L  M  *  P  I  I  I  I  N  N  K  A  A  V  V  R  P  L  I  M  P  E  N  H  R  L  P  P  I  T  I  A  N  T  A  T  I  T  M  A  V  P  I  V  F  T  G  A  I  Q  T  H  L  V  V  V  L  V  M  L  L  V  M  R  I  L  V  V  V  I  L  C  N  C  C  L  M  L  S  I  I  K  C  K  S  L  F  E  L  T  S  L  K  K  C  I  I  H  K  Y  D  F  N  L  T  S  V  D   </second_frame>
            <third_frame>   S  R  K  R  N  I  S  K  V  H  *  Q  E  L  E  D  D  N   : D  D  R  D  E  S  T  H  G  L  C  R  M  *  E  Q  G  Q  K  I  S  R  E  S  *  R :   C  *  *  C  R  N  R  Y  V  Y  A  K  G  D  S  N  R  M  G  *  S  K  E  N  T  Q  N  S  *  K  N  W  *  K  S  *  N  M  A  I  S  S  *  S  *  D  E  K  *  P  Y  L  C  N  R  S  L  L  S  T  T  R  L  Q  W  S  D  H  L  L  C  R  R  T  T  G  F  L  L  *  L  S  Q  T  R  L  R  *  L  W  P  C  L  *  S  L  Q  G  Q  F  K  H  I  W  *  S  C  W  *  C  F  *  *  *  E  S  S  W  L  *  Y  Y  V  I  V  V  *  C  C  R  L  L  N  V  R  A  C  L  N  *  L  L  *  K  N  V  *  Y  I  N  M  T  L  I  *  R  Q  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0076O09.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33572" stop="33628"/>
                    <exon start="33752" stop="33827"/>
                    <exon start="34276" stop="34646"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAEKETFLKFISKSLKMTTMTEMRVHMDCAGCESKVRKSLEKVKGVDNVEIDMSMQKVTVTGWADQKKILKTVRRTGKRAEIWQFPHNPEMRNNPTYVTDHYYQQQGCSGPTTYYAGEPPASSYNYRKHGYDNYGRAYSLYRGNSNTFGSRVGDAFSDENPRGCNIM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 140 chains have been computed
$ 
$ memory statistics:
$ 272592 bytes spliced alignments in total
$ 80 spliced alignments have been stored
$ 3407 bytes was the average size of a spliced alignment
$ 16208 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 2701 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 168 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-18 00:00:54
-->
