<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-07 04:15:31"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_marker_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_marker_seqs" ref_id="SGN-M7101" ref_strand="+" ref_description="SGN-M7101 C2_At1g78810 [cosii_markers]">
      <seq>tttagaaagcaaaaatggcctggaaaaccgatactgaccttataaattccgaccctattccatattccggcgatgttgagaggccttgtaaacccgtcattgaatcttcaggctggcctactagttggcaaaacgacagtaacaaatcaaagctacaaacccctttacctaccgccgaaaacgaagctgcgaacaacagtcaacttccggcattgctcaaagttgctgaatatttgaactccacactcagtctagacgacgatgacgagttttctgagtatataggtgaagatggggattatttcatcaatggggatgagggttttctggatggggaagaggggtttcaggactataatttttttgtgaagttgtttaagcaggatgatgggttaagagagtactatgagaaaaatcgagagaatggggtgttttgttgtcttgtttgttgtggggttcgtgagaaagggtggaagaggtttaaggattgttcatctcttgttcagcattccataagcattgcgaaaacctctaagagacgagctcatcgtgcttactgtaaggtcgtctgtgaaattcttggctgggatgttaatagcctgccttccattgtcctctctgcaagcgttaagctcggtgaatcttctgataaaccagttaaggctcaggggaatgtagatgatgatggtggggatgacggtttgagtggtcattgcaaatccacaagttctgtaagtatcagcgatactgaagtatctctgtcgaagctgtctttgattgataaaagccaacaaggaaaagattgttgctctgcaaaattagagaactctctaagtggagccactgttgatagaagcttgggagatcccagcaaaggtacttctgaaacaaccaaagagaatgctgagggggagaattccgtgagcaaagctggtgttgatggactcttggaagatctcagctttcttactcttgaaacacaaaaattgaatgcaaagggtgcatctgatcgtgtggtgccttatgaagaaactgggggaatcctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="30648" stop="27932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30348" g_stop="29681" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="668" r_length="668" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29680" i_stop="29442" i_length="239">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.77"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29441" g_stop="29289" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="824" r_length="156" r_score="0.856"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29288" i_stop="29199" i_length="90">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29198" g_stop="29112" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="825" r_stop="911" r_length="87" r_score="0.920"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29111" i_stop="28339" i_length="773">
            <donor d_prob="0.988" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28338" g_stop="28234" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="912" r_stop="1016" r_length="105" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-M7101" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>1013</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30348" e_stop="29681"/>
          <exon e_start="29441" e_stop="29289"/>
          <exon e_start="29198" e_stop="29112"/>
          <exon e_start="28338" e_stop="28234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGGAAGCAAAAATGGCCTGGAAAACGGATACTGACCTCGAAAATTCCGACCCAATTTCAGAATCCGGCGATGTTGAGTGGCCTTGTAAACCCGTCGTTGAATCGTCAGGCTGGCCTACTAGCTGGCAAAACGACAGTAACAAATCAAAGCTACAAACCCCTTTACCTACCGCCGAAGACGAAGCTGCGAACAACAGTCAACTTCCGGCATTGCTCAAAGTTGCTGAATATTTGAACTCCACACTCAGTCTCGACGACGATGACGAGTTTTCTGAGTATATAGGTGAAAATGGGGATTATTTCATCAATGACGATGAGGGTTTTCTGGATGGGGAAGAGGGGTTTCAGGACTATGATTTTTTTGTGAAGTTGTTCAAGCAGGATGATGGGTTAAGAGAGTACTATGAGAAGAATCGTGAGAATGGGGTGTTTTGTTGTCTTGTTTGTTGTGGGGTTCGTGAGAAAGGGTGGAAGAGGTTTAAGGATTGTTCGTCTCTTGTTCAGCATTCCATAAGCATTGCGAAAACCTCTAAGAGACGAGCTCATCGGGCTTACTGTAAGGTCGTCTGTGAAATTCTTGGCTGGGATGTTGATAGCCTGCCTTCCATTGTCCTCTCTACAGGTGTTAAGCTCGGTGAATCTTCTGATAAACCAGTTAAGGCTCAGGTAACTGTTTACTGTAAGTTTTGGTTTTAATTTGACAAAGCTCAACAATTTGATTGTAAATCATCCCCAAATTGATAGATAGACTATTATATACTGAATATGTTAGTTAGTTTGTGTCCTATATGTACAAGCTTCGAGCTATCTAAATGCTTATGTCAAGCAGAGTGAAATAAATATGTCTGTCAAGTCATTACCTTGACATGCAAAGCCAATGTCTTTATCAGTTTGCAATCTTGCAGGGCAATGT---CGATGATGGTGGTGATGACAGTTTGAGTGGTCAATGCAAATCCACAAGTTCTGTTAGTGTCAGTGAGACTGAAGTGTCTCTGTCGAAATTGTCTTTGATTGATGAAAGGCAACCAGGAAAAGATTGTTGCTCTGCAGAATTAGAGGTTTGTTTGATGGCTAGTATTTTCTCTGTACTATGTATGTTGAATGAGATTATGCTAAGTTTTAGCTGACCTGTATTTTGTATTTAGCAGGACTCTCTAAGTGGAGCCACTGTTGATAGAAGCTTGGGCGATCTCGGCAAAGGTACTTCTGACACAATGAAAGAGAATGCTGAGGGGGTGAGTTTTTTGATATTGCATTTAGTTCCCATGGTAATGTCCTGCTATGCTAAGTTGCGCAGATGTGGGTGCGGGTGTCTGATACGGGTGTGGATCTAGAGGTAGGATCCTTCATGATCTAATTTTTAATATTCGAGGATATGGATCCGTAAATTGATACGGGTGTGGGGATTTGCCAAAAAATAATTGAAATATCTAAAAATAGAGTTATAAAACATAATTTATGAGATATTTTGTGGAGAACTTGGTGAGAATCCTAGAAGGCAATTAAAGGAAAAGGAGTGACATAGAAATTTCTATATAGAAGGTATTTCATTTTCTTCAATTTCATCTTAGCTTTTGTATTGATTATAGAAATCATTAAAACTGTCCAGTCTTTCCCCATCGATTTTGGTCGAAGTACCCATAATTGGTTGACCAAATCGGACACAGATCCCACACCCACACCCATATTGTGTACCGGCGCCAAAAGTGAAAGAGTCCGAGCAACTTAGGTATAGTCAAGTGTCTGGACTTACCATGTATGTTATTGTATTTTATCTTTTGTAATTCACTTGCAAGTGTCAACGGAAGTTGTGATGATCCCAGCAGTAGGATTACGTAAACACTAAAAAGAATTTGGAGGGGGGGGATTTGTCATGTCCGGTGAAGTTTTTGGGCTCGTATCTCTTCTTTTCAATTTCTGTGTGTGTATGTCTCTCTATTTCTTCTATGTTATGATTATTACATAGCTGGAATTTCACACCATTTGATTGGCTTGTATGTTGTTTTAGGAGAATTCTGTGAGCAAAGCTGGTGTTGATGGACTCTTGGAAGATCTCAGCCTTCTTACTCTTGAAACACAAAAATTGAATGGAAAGGGTGCATCTGATCGTGTG</genome_strand>
        <mrna_strand>TTTAGAAAGCAAAAATGGCCTGGAAAACCGATACTGACCTTATAAATTCCGACCCTATTCCATATTCCGGCGATGTTGAGAGGCCTTGTAAACCCGTCATTGAATCTTCAGGCTGGCCTACTAGTTGGCAAAACGACAGTAACAAATCAAAGCTACAAACCCCTTTACCTACCGCCGAAAACGAAGCTGCGAACAACAGTCAACTTCCGGCATTGCTCAAAGTTGCTGAATATTTGAACTCCACACTCAGTCTAGACGACGATGACGAGTTTTCTGAGTATATAGGTGAAGATGGGGATTATTTCATCAATGGGGATGAGGGTTTTCTGGATGGGGAAGAGGGGTTTCAGGACTATAATTTTTTTGTGAAGTTGTTTAAGCAGGATGATGGGTTAAGAGAGTACTATGAGAAAAATCGAGAGAATGGGGTGTTTTGTTGTCTTGTTTGTTGTGGGGTTCGTGAGAAAGGGTGGAAGAGGTTTAAGGATTGTTCATCTCTTGTTCAGCATTCCATAAGCATTGCGAAAACCTCTAAGAGACGAGCTCATCGTGCTTACTGTAAGGTCGTCTGTGAAATTCTTGGCTGGGATGTTAATAGCCTGCCTTCCATTGTCCTCTCTGCAAGCGTTAAGCTCGGTGAATCTTCTGATAAACCAGTTAAGGCTCAG...............................................................................................................................................................................................................................................GGGAATGTAGATGATGATGGTGGGGATGACGGTTTGAGTGGTCATTGCAAATCCACAAGTTCTGTAAGTATCAGCGATACTGAAGTATCTCTGTCGAAGCTGTCTTTGATTGATAAAAGCCAACAAGGAAAAGATTGTTGCTCTGCAAAATTAGAG..........................................................................................AACTCTCTAAGTGGAGCCACTGTTGATAGAAGCTTGGGAGATCCCAGCAAAGGTACTTCTGAAACAACCAAAGAGAATGCTGAGGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAATTCCGTGAGCAAAGCTGGTGTTGATGGACTCTTGGAAGATCTCAGCTTTCTTACTCTTGAAACACAAAAATTGAATGCAAAGGGTGCATCTGATCGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>1</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="30348" PGL_stop="28234"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30348" e_stop="29681"/>
            <exon e_start="29441" e_stop="29289"/>
            <exon e_start="29198" e_stop="29112"/>
            <exon e_start="28338" e_stop="28234"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="0.958"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="0.856"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="0.920"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="30348" e_stop="29681" e_length="668"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="29680" i_stop="29442" i_length="239"/>
          </intron>
          <exon e_serial="2" e_score="0.856">
            <gDNA_exon_boundary e_start="29441" e_stop="29289" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="29288" i_stop="29199" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="0.920">
            <gDNA_exon_boundary e_start="29198" e_stop="29112" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29111" i_stop="28339" i_length="773"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="28338" e_stop="28234" e_length="105"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30348" stop="29681"/>
              <exon start="29441" stop="29289"/>
              <exon start="29198" stop="29112"/>
              <exon start="28338" stop="28234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7101" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAGGAAGCAAAAATGGCCTGGAAAACGGATACTGACCTCGAAAATTCCGACCCAATTTCAGAATCCGGCGATGTTGAGTGGCCTTGTAAACCCGTCGTTGAATCGTCAGGCTGGCCTACTAGCTGGCAAAACGACAGTAACAAATCAAAGCTACAAACCCCTTTACCTACCGCCGAAGACGAAGCTGCGAACAACAGTCAACTTCCGGCATTGCTCAAAGTTGCTGAATATTTGAACTCCACACTCAGTCTCGACGACGATGACGAGTTTTCTGAGTATATAGGTGAAAATGGGGATTATTTCATCAATGACGATGAGGGTTTTCTGGATGGGGAAGAGGGGTTTCAGGACTATGATTTTTTTGTGAAGTTGTTCAAGCAGGATGATGGGTTAAGAGAGTACTATGAGAAGAATCGTGAGAATGGGGTGTTTTGTTGTCTTGTTTGTTGTGGGGTTCGTGAGAAAGGGTGGAAGAGGTTTAAGGATTGTTCGTCTCTTGTTCAGCATTCCATAAGCATTGCGAAAACCTCTAAGAGACGAGCTCATCGGGCTTACTGTAAGGTCGTCTGTGAAATTCTTGGCTGGGATGTTGATAGCCTGCCTTCCATTGTCCTCTCTACAGGTGTTAAGCTCGGTGAATCTTCTGATAAACCAGTTAAGGCTCAG : GGCAATGTCGATGATGGTGGTGATGACAGTTTGAGTGGTCAATGCAAATCCACAAGTTCTGTTAGTGTCAGTGAGACTGAAGTGTCTCTGTCGAAATTGTCTTTGATTGATGAAAGGCAACCAGGAAAAGATTGTTGCTCTGCAGAATTAGAG : GACTCTCTAAGTGGAGCCACTGTTGATAGAAGCTTGGGCGATCTCGGCAAAGGTACTTCTGACACAATGAAAGAGAATGCTGAGGGG : GAGAATTCTGTGAGCAAAGCTGGTGTTGATGGACTCTTGGAAGATCTCAGCCTTCTTACTCTTGAAACACAAAAATTGAATGGAAAGGGTGCATCTGATCGTGTG</gDNA_template>
            <first_frame> F  R  K  Q  K  W  P  G  K  R  I  L  T  S  K  I  P  T  Q  F  Q  N  P  A  M  L  S  G  L  V  N  P  S  L  N  R  Q  A  G  L  L  A  G  K  T  T  V  T  N  Q  S  Y  K  P  L  Y  L  P  P  K  T  K  L  R  T  T  V  N  F  R  H  C  S  K  L  L  N  I  *  T  P  H  S  V  S  T  T  M  T  S  F  L  S  I  *  V  K  M  G  I  I  S  S  M  T  M  R  V  F  W  M  G  K  R  G  F  R  T  M  I  F  L  *  S  C  S  S  R  M  M  G  *  E  S  T  M  R  R  I  V  R  M  G  C  F  V  V  L  F  V  V  G  F  V  R  K  G  G  R  G  L  R  I  V  R  L  L  F  S  I  P  *  A  L  R  K  P  L  R  D  E  L  I  G  L  T  V  R  S  S  V  K  F  L  A  G  M  L  I  A  C  L  P  L  S  S  L  Q  V  L  S  S  V  N  L  L  I  N  Q  L  R  L  R :   A  M  S  M  M  V  V  M  T  V  *  V  V  N  A  N  P  Q  V  L  L  V  S  V  R  L  K  C  L  C  R  N  C  L  *  L  M  K  G  N  Q  E  K  I  V  A  L  Q  N  *  R :   T  L  *  V  E  P  L  L  I  E  A  W  A  I  S  A  K  V  L  L  T  Q  *  K  R  M  L  R  G :   R  I  L  *  A  K  L  V  L  M  D  S  W  K  I  S  A  F  L  L  L  K  H  K  N  *  M  E  R  V  H  L  I  V   </first_frame>
            <second_frame>  L  G  S  K  N  G  L  E  N  G  Y  *  P  R  K  F  R  P  N  F  R  I  R  R  C  *  V  A  L  *  T  R  R  *  I  V  R  L  A  Y  *  L  A  K  R  Q  *  Q  I  K  A  T  N  P  F  T  Y  R  R  R  R  S  C  E  Q  Q  S  T  S  G  I  A  Q  S  C  *  I  F  E  L  H  T  Q  S  R  R  R  *  R  V  F  *  V  Y  R  *  K  W  G  L  F  H  Q  *  R  *  G  F  S  G  W  G  R  G  V  S  G  L  *  F  F  C  E  V  V  Q  A  G  *  W  V  K  R  V  L  *  E  E  S  *  E  W  G  V  L  L  S  C  L  L  W  G  S  *  E  R  V  E  E  V  *  G  L  F  V  S  C  S  A  F  H  K  H  C  E  N  L  *  E  T  S  S  S  G  L  L  *  G  R  L  *  N  S  W  L  G  C  *  *  P  A  F  H  C  P  L  Y  R  C  *  A  R  *  I  F  *  *  T  S  *  G  S   : G  Q  C  R  *  W  W  *  *  Q  F  E  W  S  M  Q  I  H  K  F  C  *  C  Q  *  D  *  S  V  S  V  E  I  V  F  D  *  *  K  A  T  R  K  R  L  L  L  C  R  I  R   : G  L  S  K  W  S  H  C  *  *  K  L  G  R  S  R  Q  R  Y  F  *  H  N  E  R  E  C  *  G   : G  E  F  C  E  Q  S  W  C  *  W  T  L  G  R  S  Q  P  S  Y  S  *  N  T  K  I  E  W  K  G  C  I  *  S  C  </second_frame>
            <third_frame>   *  E  A  K  M  A  W  K  T  D  T  D  L  E  N  S  D  P  I  S  E  S  G  D  V  E  W  P  C  K  P  V  V  E  S  S  G  W  P  T  S  W  Q  N  D  S  N  K  S  K  L  Q  T  P  L  P  T  A  E  D  E  A  A  N  N  S  Q  L  P  A  L  L  K  V  A  E  Y  L  N  S  T  L  S  L  D  D  D  D  E  F  S  E  Y  I  G  E  N  G  D  Y  F  I  N  D  D  E  G  F  L  D  G  E  E  G  F  Q  D  Y  D  F  F  V  K  L  F  K  Q  D  D  G  L  R  E  Y  Y  E  K  N  R  E  N  G  V  F  C  C  L  V  C  C  G  V  R  E  K  G  W  K  R  F  K  D  C  S  S  L  V  Q  H  S  I  S  I  A  K  T  S  K  R  R  A  H  R  A  Y  C  K  V  V  C  E  I  L  G  W  D  V  D  S  L  P  S  I  V  L  S  T  G  V  K  L  G  E  S  S  D  K  P  V  K  A  Q  :  G  N  V  D  D  G  G  D  D  S  L  S  G  Q  C  K  S  T  S  S  V  S  V  S  E  T  E  V  S  L  S  K  L  S  L  I  D  E  R  Q  P  G  K  D  C  C  S  A  E  L  E  :  D  S  L  S  G  A  T  V  D  R  S  L  G  D  L  G  K  G  T  S  D  T  M  K  E  N  A  E  G  :  E  N  S  V  S  K  A  G  V  D  G  L  L  E  D  L  S  L  L  T  L  E  T  Q  K  L  N  G  K  G  A  S  D  R  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30343" stop="29681"/>
                    <exon start="29441" stop="29289"/>
                    <exon start="29198" stop="29112"/>
                    <exon start="28338" stop="28234"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1008</number_coding_nucleotides>
                  <number_encoded_amino_acids>336</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAKMAWKTDTDLENSDPISESGDVEWPCKPVVESSGWPTSWQNDSNKSKLQTPLPTAEDEAANNSQLPALLKVAEYLNSTLSLDDDDEFSEYIGENGDYFINDDEGFLDGEEGFQDYDFFVKLFKQDDGLREYYEKNRENGVFCCLVCCGVREKGWKRFKDCSSLVQHSISIAKTSKRRAHRAYCKVVCEILGWDVDSLPSIVLSTGVKLGESSDKPVKAQGNVDDGGDDSLSGQCKSTSSVSVSETEVSLSKLSLIDERQPGKDCCSAELEDSLSGATVDRSLGDLGKGTSDTMKENAEGENSVSKAGVDGLLEDLSLLTLETQKLNGKGASDRV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 55 chains have been computed
$ 
$ memory statistics:
$ 2024 bytes spliced alignments in total
$ 1 spliced alignments have been stored
$ 2024 bytes was the average size of a spliced alignment
$ 5624 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5624 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 55 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-07 04:15:36
-->
