<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-07 04:08:01"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E712594" ref_strand="+" ref_description="SGN-E712594 [FB05BB06]">
      <seq>taattttcctttctctaagctaaaacaattcattaaattaaaacacaaaacaaatctattctccacccaatttatgtttacttttcttttttatttttttttacaaaattgtcttggtagtgttacaaaaaattattccttggtagaaattaaaaccccttcttgagaagatagggaaacaatttcaatctatgatgtcatcaagtgagcaaaaaagggaagtaggaggaagagaaggagaaggatcatcatcaatgaccttaacacaatccgatcatcatcatcagctatcaccacctcctcaattgagtcgttacgagtctcagaaacgccgtgattggaatacttttggtcaatacttgaagaatcacaaacccccggtacctttacctcagtgcaactataatcacgtgttagattttcttcgatacctagatcaatttggaaaaactaaggtacatttaaatggatgtgtattttttggacaagtggaacaagttggaccatgtacatgtccacttagacaagcatggggaagtttagatgcactaattggaaggcttagagctgcttatgaagaaaatggaggattacaagagactaatccatttgctaatagtgctattagaatttatctacgtgaggtaagagattctcaagctaaagcaaggggaattccttataagaagaagaaaaaaaagaggaaaattcaaattaattctagtaataacaatgaggtaaattctacttgatttttcacaagaggaaaaaaaaaatgaatggaaatatttatttcttttataataagaaggttatttcaatttgctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="6024" stop="68226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6324" g_stop="7153" g_length="830"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="830" r_length="830" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E712594" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6324" e_stop="7153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTTCCTTTCTCTAAGCTAAAACAATTCATTAAATTAAAACACAAAACAAATCTATTCTCCACCCAATTTATGTTTACTTTTCTTTTTTATTTTTTTTTACAAAATTGTCTTGGTAGTGTTACAAAAAATTATTCCTGGGTAGAAATTAAAACCCCTTCTTGAGAAGATAGGGAAACAATTTCAATCTATGATGTCATCAAGTGAGCAAAAAAGGGAAGTAGGAGGAAGAGAAGGAGAAGGATCATCATCAATGACCTTAACACAATCCGATCATCATCATCAGCTATCACCACCTCCTCAATTGAGTCGTTACGAGTCTCAGAAACGCCGTGATTGGAATACTTTTGGTCAATACTTGAAGAATCACAAACCCCCGGTACCTTTACCTCAGTGCAACTATAATCACGTGTTAGATTTTCTTCGATACCTAGATCAATTTGGAAAAACTAAGGTACATTTAAATGGATGTGTATTTTTTGGACAAGTGGAACAAGTTGGACCATGTACATGTCCACTTAGACAAGCATGGGGAAGTTTAGATGCACTAATTGGAAGGCTTAGAGCTGCTTATGAAGAAAATGGAGGATTACAAGAGACTAATCCATTTGCTAATAGTGCTATTAGAATTTATCTACGTGAGGTAAGAGATTCTCAAGCTAAAGCAAGGGGAATTCCTTATAAGAAGAAGAAAAAAAAGAGGAAAATTCAAATTAATTCTAGTAATAACAATGAGGTAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>TAATTTTCCTTTCTCTAAGCTAAAACAATTCATTAAATTAAAACACAAAACAAATCTATTCTCCACCCAATTTATGTTTACTTTTCTTTTTTATTTTTTTTTACAAAATTGTCTTGGTAGTGTTACAAAAAATTATTCCTTGGTAGAAATTAAAACCCCTTCTTGAGAAGATAGGGAAACAATTTCAATCTATGATGTCATCAAGTGAGCAAAAAAGGGAAGTAGGAGGAAGAGAAGGAGAAGGATCATCATCAATGACCTTAACACAATCCGATCATCATCATCAGCTATCACCACCTCCTCAATTGAGTCGTTACGAGTCTCAGAAACGCCGTGATTGGAATACTTTTGGTCAATACTTGAAGAATCACAAACCCCCGGTACCTTTACCTCAGTGCAACTATAATCACGTGTTAGATTTTCTTCGATACCTAGATCAATTTGGAAAAACTAAGGTACATTTAAATGGATGTGTATTTTTTGGACAAGTGGAACAAGTTGGACCATGTACATGTCCACTTAGACAAGCATGGGGAAGTTTAGATGCACTAATTGGAAGGCTTAGAGCTGCTTATGAAGAAAATGGAGGATTACAAGAGACTAATCCATTTGCTAATAGTGCTATTAGAATTTATCTACGTGAGGTAAGAGATTCTCAAGCTAAAGCAAGGGGAATTCCTTATAAGAAGAAGAAAAAAAAGAGGAAAATTCAAATTAATTCTAGTAATAACAATGAGGTAAATTCTACTTGATTTTTCACAAGAGGAAAAAAAAAATGAATGGAAATATTTATTTCTTTTATAATAAGAAGGTTATTTCAATTTGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E247715" ref_strand="+" ref_description="SGN-E247715 [cLEF-42-G18]">
      <seq>ttattatatagtgaacaattctctcttgtagatcacaaatcccttgaacaaacaaagcaaaaaccaaatcatttttctaagttaaaaaaaaaaaatctgatttttgtttttcttactggaaaaaagcttcttttttttcctttcttcatcatctgggttctaaaataaatcaagattcaggattttgattttgtagtttgagtaaaaagggggttgatggctactcgtaatttggagaaatttgcatctatagatgcacagatgaggcttttggtacctactaaggtgtctgaagatgatatgcttgttgagtatgatgctttgcttttggatcgatttcttgatattcttgaggatttgcatggagagggtatcaaaacaacagtccaagaatgttatgagctttctgctgagtatgaaaacacgcatgataagaagaagctggaggagcttggcagtgtgttgacaactttggatccaggggattcaattgttgttgctaagtcgatatcccatatgcttaacatggccaacttggctgaggaggttcagattgccaacagtgggagggcaaagtcgaaaaagggcgaactttcagatgagagcaacttgatgactgaatccgacattgaagaaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="7126" stop="97506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7426" g_stop="7605" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7606" i_stop="7807" i_length="202">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7808" g_stop="8011" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="384" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8012" i_stop="8581" i_length="570">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8582" g_stop="8842" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="641" r_length="257" r_score="0.766"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E247715" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7426" e_stop="7605"/>
          <exon e_start="7808" e_stop="8011"/>
          <exon e_start="8582" e_stop="8842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTATATAGTGAACAATTCTCTCTTTTAGATCACAAATCCCTTGAACAAACAAAGCAAAAACCAAATCATTTTTCTAAGTTAAAAAAAAAAAATCTGATTTTTGTTTTTCTTACTGGAAAAAAGCTTCTTTTTTTTCCTTTCTTCATCATCTGGGTTCTAAAATAAATCAAGATTCAGGTACCCCATTATTTATAATACTCTTTTTTTCATTGCCATACGCTCAAAATTTGATCTTTTTTTCTGTTTCATGTGGACCCTTTAAAATCCCTTTTTTTAAAAAATATTCTGTTTTGATGGGGTAATTTGTATTAAAAAATTATGATGATCTTTCTGTTGTGTCCCACTATTTTATTTATTTTTTTAAAATAATTTTTTGCAGGATTTTGATTTTGTAGTTTGAGTAAAAAGGGGGTTGATGGCTACTCGTAATTTGGAGAAATTTGCATCTATAGATGCACAGATGAGGCTTTTGGTACCTACTAAGGTGTCTGAAGATGATATGCTTGTTGAGTATGATGCTTTGCTTTTGGATCGATTTCTTGATATTCTTGAGGATTTGCATGGAGAGGGTATCAAAACAACAGTATGTTTATGCATTTCAAAATTTCAATCTTTTTTTTAACTGTGTTTTAGCTGAAGATTTGATTTTTATGTGTTATAGTATTATGTATGACGCAGTGGTGAATGAAATGGTGGGAGGTGATAGGTATTCTGTGGAATTAGTCGAGGTGTGTACACGATTGTTATAAAAAAAAGAAGTTTTTAAAAAAAATAGTACTATAGTCTCAGTTGAACATTTTGTATCTTTAATAGTGGTGATTTCTTAGTATTATCAAAGGTGCGCTTAAAATGTGATTAATCCCTGAAGTGAGGTGCAAAAACATGTCAAGTGTTTTGCCTCGCTAAGATTAGTGGGCACTTTAGTGTCATTATCAGGGCTCTTAAGTATATATTTTTCCTTGCCAATGAGCGAAATCCAATTTCTTTGTTGATATGTTTGAAATAAATTCGTATATTTATTTGTCTTGGACGACACAAGCATATTTTGTAGTATTTTTTTTCCCTCCATTTCTGCGTAAAACCCCGACAGACTTTAGAACATTTTTACTCTTTTCGCCTTTGATAATGCTGGATTTGGTTGATGTGATTTTAGGTCCAAAAATGTTAT-ACCCTTTTGCTGAATTTTAAAACCCCCTTGATAACAAAAACTTGGAGGACCTTTGCAATGTTTTTAAAATTTTTGATTCTCGGGGATTCATTTGTTGTTTGCTAAAGTCAATTTTCCATTTTGCTTAACATGGCCAACTTGTCTTTAGGAGGGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>TTATTATATAGTGAACAATTCTCTCTTGTAGATCACAAATCCCTTGAACAAACAAAGCAAAAACCAAATCATTTTTCTAAGTTAAAAAAAAAAAATCTGATTTTTGTTTTTCTTACTGGAAAAAAGCTTCTTTTTTTTCCTTTCTTCATCATCTGGGTTCTAAAATAAATCAAGATTCAG..........................................................................................................................................................................................................GATTTTGATTTTGTAGTTTGAGTAAAAAGGGGGTTGATGGCTACTCGTAATTTGGAGAAATTTGCATCTATAGATGCACAGATGAGGCTTTTGGTACCTACTAAGGTGTCTGAAGATGATATGCTTGTTGAGTATGATGCTTTGCTTTTGGATCGATTTCTTGATATTCTTGAGGATTTGCATGGAGAGGGTATCAAAACAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAGAATGTTATGAGCTTTCTGCTGAGTATGAAAACACGCATGATAAGAAGAAGCTGGAGGAGCTTGGCAGTGTGTTGACAACTTTGGA-TCCAGGGGATTCAATTGTTG-TTGCT-AAGTCGATATCCCA-TATGCTTAACATGGCCAACTTGGC-TGAGGAGGTTCAGATTGCCAACAGTGGGAGGGCAAAGTCGAAAAAGGGCGAACTTTCAGATGAGAGCAACTTGATGACTGAATCCGACATTGAAGAAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E334657" ref_strand="+" ref_description="SGN-E334657 [cTOD-23-F9]">
      <seq>aacaattctctcttttagatcacaaatcccttgaacaaacaaagcaaaaaccaaatcatttttctaagttaaaaaaaaaaaatctgatttttgtttttcttactggaaaaaagcttcttttttttcctttcttcatcatctgggttctaaaataaatcaagattcaggattttgattttgtagtttgagtaaaaagggggttgatggctactcgtaatttggagaaatttgcatctatagatgcacagatgaggcttttggtacctactaaggtgtctgaagatgatatgcttgttgagtatgatgctttgcttttggatcgatttcttgatattcttgaggatttgcatggagagggtatcaaaacaacagtccaagaatgttatgagctttctgctgagtatgaaaacacgcatgataagaagaagctggaggagcttggcagtgtgttgacaactttggatccaggggattcaattgttgttgctaagtcgatatcccatatgcttaacatggccaacttggctgaggaggttcagattgccaacagtgggaaggcaaagtcgaaaaagggcgaactttcagatgagagcaacttgatgactgaatccgacattgaagaaacactcaagagacttgtagtgaacttgaacaagtctcctcgagaagtttttaatgctctgaaagatcagactgtggatttggtctttactgctcatccgactncagctatccgaagatctttgcttcagaagcatgcaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="7139" stop="97642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7439" g_stop="7605" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7606" i_stop="7807" i_length="202">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7808" g_stop="8011" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="371" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8012" i_stop="8581" i_length="570">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8582" g_stop="8865" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="649" r_length="278" r_score="0.750"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8866" i_stop="10557" i_length="1692">
            <donor d_prob="0.000" d_score="0.54"/>
            <acceptor a_prob="0.660" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10558" g_stop="10563" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="654" r_length="5" r_score="0.833"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10564" i_stop="12403" i_length="1840">
            <donor d_prob="0.188" d_score="0.00"/>
            <acceptor a_prob="0.292" a_score="0.57"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12404" g_stop="12513" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="765" r_length="111" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E334657" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7439" e_stop="7605"/>
          <exon e_start="7808" e_stop="8011"/>
          <exon e_start="8582" e_stop="8865"/>
          <exon e_start="10558" e_stop="10563"/>
          <exon e_start="12404" e_stop="12513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATTCTCTCTTTTAGATCACAAATCCCTTGAACAAACAAAGCAAAAACCAAATCATTTTTCTAAGTTAAAAAAAAAAAATCTGATTTTTGTTTTTCTTACTGGAAAAAAGCTTCTTTTTTTTCCTTTCTTCATCATCTGGGTTCTAAAATAAATCAAGATTCAGGTACCCCATTATTTATAATACTCTTTTTTTCATTGCCATACGCTCAAAATTTGATCTTTTTTTCTGTTTCATGTGGACCCTTTAAAATCCCTTTTTTTAAAAAATATTCTGTTTTGATGGGGTAATTTGTATTAAAAAATTATGATGATCTTTCTGTTGTGTCCCACTATTTTATTTATTTTTTTAAAATAATTTTTTGCAGGATTTTGATTTTGTAGTTTGAGTAAAAAGGGGGTTGATGGCTACTCGTAATTTGGAGAAATTTGCATCTATAGATGCACAGATGAGGCTTTTGGTACCTACTAAGGTGTCTGAAGATGATATGCTTGTTGAGTATGATGCTTTGCTTTTGGATCGATTTCTTGATATTCTTGAGGATTTGCATGGAGAGGGTATCAAAACAACAGTATGTTTATGCATTTCAAAATTTCAATCTTTTTTTTAACTGTGTTTTAGCTGAAGATTTGATTTTTATGTGTTATAGTATTATGTATGACGCAGTGGTGAATGAAATGGTGGGAGGTGATAGGTATTCTGTGGAATTAGTCGAGGTGTGTACACGATTGTTATAAAAAAAAGAAGTTTTTAAAAAAAATAGTACTATAGTCTCAGTTGAACATTTTGTATCTTTAATAGTGGTGATTTCTTAGTATTATCAAAGGTGCGCTTAAAATGTGATTAATCCCTGAAGTGAGGTGCAAAAACATGTCAAGTGTTTTGCCTCGCTAAGATTAGTGGGCACTTTAGTGTCATTATCAGGGCTCTTAAGTATATATTTTTCCTTGCCAATGAGCGAAATCCAATTTCTTTGTTGATATGTTTGAAATAAATTCGTATATTTATTTGTCTTGGACGACACAAGCATATTTTGTAGTATTTTTTTTCCCTCCATTTCTGCGTAAAACCCCGACAGACTTTAGAACATTTTTACTCTTTTCGCCTTTGATAATGCTGGATTTGGTTGATGTGATTTTAGGTCCAAAAATGTTAT-ACCCTTTTGCTGAATTTTAAAACCCCCTTGATAACAAAAACTTGGAGGACCTTTGCAATGTTTTTAAAATTTTTGATTCTCGGGGATTCATTTGTTGTTTGCTAAAGTCAATTTTCCATTTTGCTTAACATGGCCAACTTGTCTTTAGGAGGGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTATTCAGCTAACTAAGAATCATAGGAATTTCCCTAGCCCTAAACTAGTGTTTTAGAAACCCTAAAATTTAGACTGTAACTTTGCTCTTCTACTTGAATTTAGGAACAATAGTAATTAGTAGGCAGCCACACAATCCAAGATTTAAACCTAATGGATTTGATTTTCAAGATTTTAGTAATGAATTCATTATATTTTAAAATTATAATTTCAGATCTATTATTTACGATAAGTTAAACAAATTTATATATATAAAAAATTTAAACTCTACATTAGAAATACAGATGAAATCTCATCTATGAATATTACATCACCATTTGTCAGTGACGAAAACAGTATTTTCACCCTCAACGATACCATTAATTTCATGTTGTCACATTAATTAATTGATGAATTAAACATTTTTTTTAAAAGAGTCTGCATGAAATAGACTTACGATATGACAAGTCATTAATTAGTAATAGTAGCAATTATTATGTGTTTAGGCCCCACTACATAAAGAGACTTCTTCATTGAACAAATTTAATTTAGTCATAATCATAGCCATAAATAGAAAATAATCATGTCTTGTGCCCTTGTTAATACTTTTAATCTGTTGAAATTTAATTCACATTGTCCTAAAATTCAAACTTATACAATTGAAATGTCAAAACTATATATGTCATGACATTTAATAAAATCCTAAATTAGAACTTATAAAAGTAAATTCAAAACATGCGAAAAATTCCTAGAGTTCGACGGAGTCCCATTATCCCTAGTTGCGACCATAATTATATTAAATTTAAAATACTAACTAAAACTCGATTAGCGATTAAAAAAATAACTATTCACATATTTCTTTTAATTTTTATTCATCTAAGATTAAATTAATGTTTTTTGATTTATTCACACTCGATATTAATTAGTTGTTTGGTATGATAGTGGATGTTAAACAAATATTGTAATGAGTAAAATATATGAAAAGGTAATTTAGAGGGAGCAATATTAGATTTGGAGATCTTTGTTTATTTGATTTGGTCAACCAGAATCAAAGGTGGCTTATAAACATAAAAAGGATTAATTGGAGATTAGCAATGAGACATGCTGGGCCAAATTAATGGAATAAACATCTGGGAGAATTTTGTCTTTTTATTTTATATTATATTATACTATATAGTATTATTATTTAACATAGTGGTAGTTTGTGGTCACTTACATGATCTATTTTGCTACTTTTCTTATTTGTCAAAAATTGTTAAGTCCTGATAATGTTGCTCGTACTCTCTTAAAATATTTATGTTTTTGTGTTAAATTTTTTAAAAATGTGTTATATATAGAAGGTTCAATATGTACCTGATGACAATTTTGAGGAGTACGAATAATATAAGTAATAGTTGATGTACTGCAACAAAAAAAATTGATATCATTACTAAGGTTTAATCTTGGTGGCTTTTGCTAAAAATTCTTGTAGAATTTCAATCAAAATTTTCACAAGAACTACTTTTTATGTCTTCGTACTTGGAATAAATTATTTTTTACAAATAATTTTATGAATGGTAAAAACCGCGCTAGCTTATTCACATGTTTATGTCTTCATGAAATCTCAGGCAAGGGCAGATGAAGACTTAAAGTTACGGATCAACTCAATAGCTTTTGCCTGAATCCTATATTTCTATCTAAGAATTCACTCAATATCAATACATATTTGATCGTGAACACAGTACAGGAACCAGTAAACTTCAAATTCTGAATCTGCCTCTACTTTCGGGAACATGAAAAGGGCACTGCATTTGCATGATACTTAGAAGCTATGATACAGTATTGATCAATAATTTGCTGCAACTATGGATCACCTTGTCATAAAGCACTGTGTAATTTGAGCTGCTTATGTTCCTGAAGTAGCAGCCTTTGTCGTCGTTGTATTTGTATATCTGTTGTGTGCTCCCGACTCCACTGTCTATCGACTGATCCTTTACAAGCATACACCCCTGCGCGTTCTGCAGATTGTGAACAGAGCTGGCTGAGGATCCATACTTCAACCTCTTTTCATGGAATATCAAAGTCACATTCGAGATAGAAGCATAGCTTTTATCTCCTATCTCAACACCATCAGAGTACAAGTGAAGCTGAAACTTTTTGAAGGATTCAAGAACCTGAACAGAAAAAGACCGCGTCTTAGCATAAACAGTGTCATTAAACCTCAATAGTCTTGATCAACAACTTGCTAGTTCGCGTCATTTCCCATCACCATATAGTTACTATAGCTCAAACTCTGAGATGATGTCGTTGTGACTGTTCCATAAGATGATTTTACCCATCCAGTCATTGAGATCGATCTACGAGCATTTGTCACAAAGGAACCATCAAGACCAGTAAAATTACTCGCGAGTGAAAAAGAAAGGGGCAAACTACTATACTCCAACAACTTCCCTTCTGTTTTTACACTCTTTTTATCCAACCAAAGATGCAAATTTGCATCAACATACCACACATTCAAAGCATTTGTAACACTAAACGAAATATTATGAAAACTTCCATCTAAGATCTTCTTTAACAACGGCGTAATTTCAATATCATATGAAGGAAGATCAAATGAGTCAATTCCACTGATAGGTCTCCACAACAGAGGATTGATACCACCAGTATAAATCACAGTAAAAGGCCAAACTGAAGCAACTACACCATCATCCACACTTACTATCACCTCTCTGAAAGCAACCATTTCCCGACGATTATTTGCAGTAATATACTCATTTGGCAAATTTCCATACCAGAACTCATCATTCTCATGAAAAGACACATAAATTTCCAATACAGCCCTGTAAACATTTTGTCATCTGTTGAATTCTCAATCTCAAACCAACAAACCATCATTCAACGGCAAATTACGCGATACGGGTGCGATTAAATCAGCCACAGAATCAAATCCCTTAAAGGGGTTTCTCACTTTTTCAGTAGGATAAAAATGAACAAATATTTCTACATGATAAACCCCAGTATATTTACTATTAACAATGTTCCCAATATAAACAGCAAGTGTTTGATTAGTCAGAAGCAAAGAAGAATACCTAGTGATATCCTTCTTGACAGTCCAAATAACTCCATTTTGGCCTTGGCTCTGCAGTGCAACTCCTGAAAATTTCAACCCCACTAAGCCAAATCCCAAAAATTCTATCAAATTGTCTTCCTTTACTCATTGCTTTCCATTCAAGAATGATTTTGGAGAATTTTTTAGATGGGCAATTTGAAGGGGGTGTGTAATTTGTGAGAATTGGTGTTTTTCCATATGTGTAGGCAAAATCATGTTTGAGGATTAAGTAGGAACAAGATTTGGTTTTGGGTAATTTTATTGGATTTGTGACTTGAAAATAGGCTGTGGGATTGTCAATCTTGGGAGAAATGTCTAGTTGAGTGGTGATATTTGGTCTGATTAGAGCTGTTTTATGGATTGTTGGTGTGAAAAAAAGAGGTACTTGGAGTAATGAGAAACAAATGAAGAAGAAGAAGAAGAAAGACAGCCATTAATGGTGTATGCAAGAGAATGTGTAGTTTTGTTAATAGCTCTTCCTTAGATTGTGATC-CGAAGATTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>AACAATTCTCTCTTTTAGATCACAAATCCCTTGAACAAACAAAGCAAAAACCAAATCATTTTTCTAAGTTAAAAAAAAAAAATCTGATTTTTGTTTTTCTTACTGGAAAAAAGCTTCTTTTTTTTCCTTTCTTCATCATCTGGGTTCTAAAATAAATCAAGATTCAG..........................................................................................................................................................................................................GATTTTGATTTTGTAGTTTGAGTAAAAAGGGGGTTGATGGCTACTCGTAATTTGGAGAAATTTGCATCTATAGATGCACAGATGAGGCTTTTGGTACCTACTAAGGTGTCTGAAGATGATATGCTTGTTGAGTATGATGCTTTGCTTTTGGATCGATTTCTTGATATTCTTGAGGATTTGCATGGAGAGGGTATCAAAACAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAGAATGTTATGAGCTTTCTGCTGAGTATGAAAACACGCATGATAAGAAGAAGCTGGAGGAGCTTGGCAGTGTGTTGACAACTTTGGA-TCCAGGGGATTCAATTGTTG-TTGCT-AAGTCGATATCCCA-TATGCTTAACATGGCCAACTTGGC-TGAGGA-GGTT-CAGATTGCCAACAGTGGGAAGGCAAAGTCGAAAAAGGGCGAACTTTCAGATGAGAGCAACTTGATGACTGAATCCGACATTGAAGAAACACTCAAGAGACTTGTAGTGAACTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA-CA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTCCTCGAGAAGTTTTTAATGCTCTGAAAGATCAGACTGTGGATTTGGTCTTTACTGCTCATCCGACTNCAGCTATCCGAAGATCTTTGCTTCAGAAGCATGCAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="17818" stop="18714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18118" g_stop="18440" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18118" e_stop="18440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATATTTTT-TTTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTTACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCTTTTTTCTCTGCAATATTTGAAGTAAAATGTCTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATATAAAACAGAAACAGAA-TTATACACTTCTGTGTATAAAGTGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="17818" stop="18714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18118" g_stop="18409" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18118" e_stop="18409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATATTTTT-TTTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTTACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCTTTTTTCTCTGCAATATTTGAAGTAAAATGTCTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATATAAAACAGAAACAGA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E392727" ref_strand="+" ref_description="SGN-E392727 [TUS-37-J5]">
      <seq>taatatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtcacgctttatacaaaatttaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="17818" stop="18569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18118" g_stop="18269" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E392727" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>152</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18118" e_stop="18269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATATTTTT-TTTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTTACTGCAATTGTATAATTCGCAATT</genome_strand>
        <mrna_strand>TAATATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCACGCTTTATACAAAATTTAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="17819" stop="18867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18119" g_stop="18567" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18119" e_stop="18567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATATTTTT-TTTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTTACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCTTTTTTCTCTGCAATATTTGAAGTAAAATGTCTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATATAAAACAGAAACAGAA-TTATACACTTCTGTGTATAAAGTGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGAGAGACGCTGGCAAATTTTTAGCTAATGTTTTCTATGGAGCACAATTAAATCAAACCCTAGCTATTCTATTTATTTTAGGTTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTTA-GTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E206270" ref_strand="-" ref_description="SGN-E206270 [cLEC-23-A11]">
      <seq>aaatataccacaacattaacatatcttagacttgaaattgatggaaatttaaaggcttacacttttgttagagatgaagaggcagatgaatttcgttggaaggtaacttatcaaatgctataatttaaatgttttttttaaaaaaaatgaacaataaaacacgtaactttataagataaaggattttatttccagtaaaataagtggagaaaatgagtgggtccacagctattattttcctttttttttttggttgaagggtgtattttatcataatttctatatatttttttctgttaaaggatgtatttaattatgttttctactatttaagatgctatgacaaatgtaaagggtgtattttattatgttttcaactatttgatatgctatgcccaatacatatattccaattgagtgaaaaaaaataaatgactcgagcctagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="19500" stop="18483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19200" g_stop="18788" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="421" polyA_stop="432"/>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E206270" ref_strand="-">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206270" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="19200" e_stop="18788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATAACACAACATTAACATATCTTAGACTTGAAATTGATGGAAATTTAAAGGCTTACACTTTTGTTAGAGATGAAGAGGCAGATGAATTTCGTTGGAAGGTAACTTATCAAATGCTATAATTTAAATGTTTTTTTTAAAAAAAATAAAAAATAAAAAACGTAACTTTATAAGATAAAGGATTTTATTTCCAGTAAAATAAGTGGAGAAAATGAGTGGGTCCACAGCTATTATTTTCCTTTTTTTTTTTTGGTTGAAGGGTGTATTTTATTATAATTTCTATATATTTTTTTCTGTTAAAGGATGTATTTAATTATGTTTTCTACTATTTAAGATGCTATGACAAATGTAAAGGGTGTATTTTATTATGTTTTCTACTATTTGATATGCTATGCCAAATAGATATATTCAA</genome_strand>
        <mrna_strand>AAATATACCACAACATTAACATATCTTAGACTTGAAATTGATGGAAATTTAAAGGCTTACACTTTTGTTAGAGATGAAGAGGCAGATGAATTTCGTTGGAAGGTAACTTATCAAATGCTATAATTTAAATGTTTTTTTTAAAAAAAATGAACAATAAAACACGTAACTTTATAAGATAAAGGATTTTATTTCCAGTAAAATAAGTGGAGAAAATGAGTGGGTCCACAGCTATTATTTTCC-TTTTTTTTTTTGGTTGAAGGGTGTATTTTATCATAATTTCTATATATTTTTTTCTGTTAAAGGATGTATTTAATTATGTTTTCTACTATTTAAGATGCTATGACAAATGTAAAGGGTGTATTTTATTATGTTTTCAACTATTTGATATGCTATGCCCAATACATATATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E212605" ref_strand="+" ref_description="SGN-E212605 [cLEC-74-J20]">
      <seq>tccttcatggcctactacacttcttgcctctctatttctcttctcccaaatattttcttgcattgcccaagttccacttgaaaacacctttaaattcgtcaacgaaggcgaattaggaccttatgtcgtagaatatcaagcagattatcgcgttcttagtgttttcagtaatccattccagctctgtttctataacacaactcctaacgcatggacactagcgttacgaatgggcactgtccgttctgaatcactcatgcgttgggtgtgggaagcaaatagaggaaaccccgttaaagaaaacgcgaccctcacatttggaactaacggaaatcttgtattggcggatgctgacggtcgaatcgcttggcagaccaacacagccaataaaggagtgacagggttcaagttgttacctaatggtaacatggtgctacatgactctaaaggtaaattcgtctggcagagtttcaactatcccactgatactttactagtgagccaaactctcagattgtccggcccgaataagcttgtgagtcgggcttcggtgaaaaaaaatgcgaacgggccttatagcttggtggtgcagccaaaattgtttgctatctacaataggactaagttaggcgtggaattagcttggttcgattttggnaacagtatgttggaatccgtgaaattaaataatggaaaccaaagattgaattggattatagattggcaaaatcaacaaaaagaagtcacatgtgatggcatttactaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="20266" stop="18895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19966" g_stop="19195" g_length="772"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="770" r_length="770" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E212605" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19966" e_stop="19195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCATGGCCTACTACACTTCTTGCCTCTCTATTTCTCTTCTCCCAAATATTTTCTTGCATTGCCCAAGTTCCACTTGAAAACACCTTTAAATTCGTCAACGAAGGCGAATTAGGACCTTATGTCGTAGAATATCAAGCAGATTATCGCGTTCTTAGTGTTTTCAGTAATCCATTCCAGCTCTGTTTCTATAACACAACTCCTAACGCATGGACACTAGCGTTACGAATGGGCACTGTCCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAATAGAGGAAACCCCGTTAAAGAAAACGCGACCCTCACATTTGGAACTAACGGAAATCTTGTATTGGCGGATGCTGACGGTCGAATCGCTTGGCAGACCAACACAGCCAATAAAGGAGTGACAGGGTTCAAGTTGTTACCTAATGGTAACATGGTGCTACATGACTCTAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGATACTTTACTAGTGAGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGTCGGGCTTCGGTGAAAAAAAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCAAAATTGTTTGCTATCTACAATAGGACTAAGTTAGGCGTGGAATTAGCTTGGTTCGATTTTGGAAACAGTATGTTGGAATCCGTGAAATTAAATAATGGAAACCAAAGATTGAAATTGGATTATAGATTGGCAAAATCAACAAAAAGAAGTTCACATGTGATGGCATTTACTAAATAT</genome_strand>
        <mrna_strand>TCCTTCATGGCCTACTACACTTCTTGCCTCTCTATTTCTCTTCTCCCAAATATTTTCTTGCATTGCCCAAGTTCCACTTGAAAACACCTTTAAATTCGTCAACGAAGGCGAATTAGGACCTTATGTCGTAGAATATCAAGCAGATTATCGCGTTCTTAGTGTTTTCAGTAATCCATTCCAGCTCTGTTTCTATAACACAACTCCTAACGCATGGACACTAGCGTTACGAATGGGCACTGTCCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAATAGAGGAAACCCCGTTAAAGAAAACGCGACCCTCACATTTGGAACTAACGGAAATCTTGTATTGGCGGATGCTGACGGTCGAATCGCTTGGCAGACCAACACAGCCAATAAAGGAGTGACAGGGTTCAAGTTGTTACCTAATGGTAACATGGTGCTACATGACTCTAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGATACTTTACTAGTGAGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGTCGGGCTTCGGTGAAAAAAAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCAAAATTGTTTGCTATCTACAATAGGACTAAGTTAGGCGTGGAATTAGCTTGGTTCGATTTTGGNAACAGTATGTTGGAATCCGTGAAATTAAATAATGGAAACCAAAGATTG-AATTGGATTATAGATTGGCAAAATCAACAAAAAGAAG-TCACATGTGATGGCATTTACTAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E210863" ref_strand="+" ref_description="SGN-E210863 [cLEC-69-A11]">
      <seq>cttcatggcctactacacttcttgcctctctatttctcttctcccaaatattttcttgcattgcccaagttccacttgaaaacacctttaaattcgtcaacgaaggcgaattaggaccttatgtcgtagaatatcaagcagattatcgcgttcttagtgttttcagtaatccattccagctctgtttctataacacaactcctaacgcatggacactagcgttacgaatgggcactgtccgttctgaatcactcatgcgttgggtgtgggaagcaaatagaggaaaccccgttaaagaaaacgcgaccctcacatttggaactaacggaaatcttgtattggcggatgctgacggtcgaatcgcttggcagaccaacacagccaataaaggagtgacagggttcaagttgttacctaatggtaacatggtgctacatgactctaaaggtaaattcgtctggcagagtttcaactatcccactgatactttactagtgagccaaactctcagattgtccggcccgaataagcttgtgagtcgggcttcggtgaaaaaaaatgcgaacgggccttatagcttggtggtgcagccaaaattgtttgctatctacaataggactaagttaggcgtggaattagcttggttcgattttggaaacagtatgttggaatccgtgaaattaaataatggaaaccaaagattgaaattggattatagattggcaaaatcaacaaaaagaagttcacatgtgatggcatttacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="20264" stop="18900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19964" g_stop="19200" g_length="765"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="765" r_length="765" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E210863" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19964" e_stop="19200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATGGCCTACTACACTTCTTGCCTCTCTATTTCTCTTCTCCCAAATATTTTCTTGCATTGCCCAAGTTCCACTTGAAAACACCTTTAAATTCGTCAACGAAGGCGAATTAGGACCTTATGTCGTAGAATATCAAGCAGATTATCGCGTTCTTAGTGTTTTCAGTAATCCATTCCAGCTCTGTTTCTATAACACAACTCCTAACGCATGGACACTAGCGTTACGAATGGGCACTGTCCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAATAGAGGAAACCCCGTTAAAGAAAACGCGACCCTCACATTTGGAACTAACGGAAATCTTGTATTGGCGGATGCTGACGGTCGAATCGCTTGGCAGACCAACACAGCCAATAAAGGAGTGACAGGGTTCAAGTTGTTACCTAATGGTAACATGGTGCTACATGACTCTAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGATACTTTACTAGTGAGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGTCGGGCTTCGGTGAAAAAAAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCAAAATTGTTTGCTATCTACAATAGGACTAAGTTAGGCGTGGAATTAGCTTGGTTCGATTTTGGAAACAGTATGTTGGAATCCGTGAAATTAAATAATGGAAACCAAAGATTGAAATTGGATTATAGATTGGCAAAATCAACAAAAAGAAGTTCACATGTGATGGCATTTACTA</genome_strand>
        <mrna_strand>CTTCATGGCCTACTACACTTCTTGCCTCTCTATTTCTCTTCTCCCAAATATTTTCTTGCATTGCCCAAGTTCCACTTGAAAACACCTTTAAATTCGTCAACGAAGGCGAATTAGGACCTTATGTCGTAGAATATCAAGCAGATTATCGCGTTCTTAGTGTTTTCAGTAATCCATTCCAGCTCTGTTTCTATAACACAACTCCTAACGCATGGACACTAGCGTTACGAATGGGCACTGTCCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAATAGAGGAAACCCCGTTAAAGAAAACGCGACCCTCACATTTGGAACTAACGGAAATCTTGTATTGGCGGATGCTGACGGTCGAATCGCTTGGCAGACCAACACAGCCAATAAAGGAGTGACAGGGTTCAAGTTGTTACCTAATGGTAACATGGTGCTACATGACTCTAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGATACTTTACTAGTGAGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGTCGGGCTTCGGTGAAAAAAAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCAAAATTGTTTGCTATCTACAATAGGACTAAGTTAGGCGTGGAATTAGCTTGGTTCGATTTTGGAAACAGTATGTTGGAATCCGTGAAATTAAATAATGGAAACCAAAGATTGAAATTGGATTATAGATTGGCAAAATCAACAAAAAGAAGTTCACATGTGATGGCATTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E213192" ref_strand="+" ref_description="SGN-E213192 [cLEC-72-F19]">
      <seq>acaaactaaacatgtctccttcatggcctactacacttcttgcctctctatttctcttctcccaaatattttcttgcattgcccaagttccacttgaaaacacctttaaattcgtcaacgaaggcgaattaggaccttatgtcgtagaatatcaagcagattatcgcgttcttagtgttttcagtaatccattccagctctgtttctataacacaactcctaacgcatggacactagcgttacgaatgggcactgtccgttctgaatcactcatgcgttgggtgtgggaagcaaatagaggaaaccccgttaaagaaaacgcgaccctcacatttggaactaacggaaatcttgtattggcggatgctgacggtcgaatcgcttggcagaccaacacagccaataaaggagtgacagggttcaagttgttacctaatggtaacatggtgctacatgactctaaaggtaaattcgtctggcagagtttcaactatcccactgatactttactagtgagccaaactctcagattgtccggcccgaataagcttgtgagtcgggcttcggtgaaaaaaaatgcgaacgggccttatagcttggtggtgcagccaaaattgtttgctatctacaataggactaagttaggcgtggaattagcttggttcgattttggaaacagtatgttggaaatccgtgaattaaataatggaaaacaaagattgaaattggattatagnatggcaaaatcaacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="20282" stop="18928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19982" g_stop="19228" g_length="755"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="755" r_length="755" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E213192" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19982" e_stop="19228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACTAAACATGTCTCCTTCATGGCCTACTACACTTCTTGCCTCTCTATTTCTCTTCTCCCAAATATTTTCTTGCATTGCCCAAGTTCCACTTGAAAACACCTTTAAATTCGTCAACGAAGGCGAATTAGGACCTTATGTCGTAGAATATCAAGCAGATTATCGCGTTCTTAGTGTTTTCAGTAATCCATTCCAGCTCTGTTTCTATAACACAACTCCTAACGCATGGACACTAGCGTTACGAATGGGCACTGTCCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAATAGAGGAAACCCCGTTAAAGAAAACGCGACCCTCACATTTGGAACTAACGGAAATCTTGTATTGGCGGATGCTGACGGTCGAATCGCTTGGCAGACCAACACAGCCAATAAAGGAGTGACAGGGTTCAAGTTGTTACCTAATGGTAACATGGTGCTACATGACTCTAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGATACTTTACTAGTGAGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGTCGGGCTTCGGTGAAAAAAAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCAAAATTGTTTGCTATCTACAATAGGACTAAGTTAGGCGTGGAATTAGCTTGGTTCGATTTTGGAAACAGTATGTTGG-AATCCGTGAAATTAAATAATGGAAACCAAAGATTGAAATTGGATTATAGATTGGCAAAATCAACAAAA</genome_strand>
        <mrna_strand>ACAAACTAAACATGTCTCCTTCATGGCCTACTACACTTCTTGCCTCTCTATTTCTCTTCTCCCAAATATTTTCTTGCATTGCCCAAGTTCCACTTGAAAACACCTTTAAATTCGTCAACGAAGGCGAATTAGGACCTTATGTCGTAGAATATCAAGCAGATTATCGCGTTCTTAGTGTTTTCAGTAATCCATTCCAGCTCTGTTTCTATAACACAACTCCTAACGCATGGACACTAGCGTTACGAATGGGCACTGTCCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAATAGAGGAAACCCCGTTAAAGAAAACGCGACCCTCACATTTGGAACTAACGGAAATCTTGTATTGGCGGATGCTGACGGTCGAATCGCTTGGCAGACCAACACAGCCAATAAAGGAGTGACAGGGTTCAAGTTGTTACCTAATGGTAACATGGTGCTACATGACTCTAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGATACTTTACTAGTGAGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGTCGGGCTTCGGTGAAAAAAAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCAAAATTGTTTGCTATCTACAATAGGACTAAGTTAGGCGTGGAATTAGCTTGGTTCGATTTTGGAAACAGTATGTTGGAAATCCGTG-AATTAAATAATGGAAAACAAAGATTGAAATTGGATTATAGNATGGCAAAATCAACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E210058" ref_strand="+" ref_description="SGN-E210058 [cLEC-40-O11]">
      <seq>cttcatggcctactacacttcttgcctctctatttctcttctcccaaatattttcttgcattgcccaagttccacttgaaaacacctttaaattcgtcaacgaaggcgaattaggaccttatgtcgtagaatatcaagcagattatcgcgttcttagtgttttcagtaatccattccagctctgtttctataacacaactcctaacgcatggacactagcgttacgaatgggcactgtccgttctgaatcactcatgcgttgggtgtgggaagcaaatagaggaaaccccgttaaagaaaacgcgaccctcacatttggaactaacggaaatcttgtattggcggatgctgacggtcgaatcgcttggcagaccaacacagccaataaaggagtgacagggttcaagttgttacctaatggtaacatggtgctacatgactctaaaggtaaattcgtctggcagagtttcaactatcccactgatactttactagtgagccaaactctcagattgtccggcccgaataagcttgtgagtcgggcttcggtgaaaaaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="20264" stop="19104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19964" g_stop="19404" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E210058" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19964" e_stop="19404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATGGCCTACTACACTTCTTGCCTCTCTATTTCTCTTCTCCCAAATATTTTCTTGCATTGCCCAAGTTCCACTTGAAAACACCTTTAAATTCGTCAACGAAGGCGAATTAGGACCTTATGTCGTAGAATATCAAGCAGATTATCGCGTTCTTAGTGTTTTCAGTAATCCATTCCAGCTCTGTTTCTATAACACAACTCCTAACGCATGGACACTAGCGTTACGAATGGGCACTGTCCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAATAGAGGAAACCCCGTTAAAGAAAACGCGACCCTCACATTTGGAACTAACGGAAATCTTGTATTGGCGGATGCTGACGGTCGAATCGCTTGGCAGACCAACACAGCCAATAAAGGAGTGACAGGGTTCAAGTTGTTACCTAATGGTAACATGGTGCTACATGACTCTAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGATACTTTACTAGTGAGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGTCGGGCTTCGGTGAAAAAAAATG</genome_strand>
        <mrna_strand>CTTCATGGCCTACTACACTTCTTGCCTCTCTATTTCTCTTCTCCCAAATATTTTCTTGCATTGCCCAAGTTCCACTTGAAAACACCTTTAAATTCGTCAACGAAGGCGAATTAGGACCTTATGTCGTAGAATATCAAGCAGATTATCGCGTTCTTAGTGTTTTCAGTAATCCATTCCAGCTCTGTTTCTATAACACAACTCCTAACGCATGGACACTAGCGTTACGAATGGGCACTGTCCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAATAGAGGAAACCCCGTTAAAGAAAACGCGACCCTCACATTTGGAACTAACGGAAATCTTGTATTGGCGGATGCTGACGGTCGAATCGCTTGGCAGACCAACACAGCCAATAAAGGAGTGACAGGGTTCAAGTTGTTACCTAATGGTAACATGGTGCTACATGACTCTAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGATACTTTACTAGTGAGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGTCGGGCTTCGGTGAAAAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E211926" ref_strand="+" ref_description="SGN-E211926 [cLEC-66-E2]">
      <seq>aacatgtctccttcatggcctactacacttcttgcctctctatttctcttctcccaaatattttcttgcattgcccaagttccacttgaaaacacctttaaattcgtcaacgaaggcgaattaggaccttatgtcgtagaatatcaagcagattatcgcgttcttagtgttttcagtaatccattccagctctgtttctataacacaactcctaacgcatggacactagcgttacgaatgggcactgtccgttctgaatcactcatgcgttgggtgtgggaagcaaatagaggaaaccccgttaaagaaaacgcgaccctcacatttggaactaacggaaatcttgtattggcggatgctgacggtcgaatcgcttggcagaccaacacagccaataaaggagtgacagggttcaagttgttacctaatggtaacatggtgctacatgactctaaaggtaaattcgtctggcagagtttcaactatcccactgatactttactagtgagccaaactctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="20274" stop="19156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19974" g_stop="19456" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E211926" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19974" e_stop="19456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATGTCTCCTTCATGGCCTACTACACTTCTTGCCTCTCTATTTCTCTTCTCCCAAATATTTTCTTGCATTGCCCAAGTTCCACTTGAAAACACCTTTAAATTCGTCAACGAAGGCGAATTAGGACCTTATGTCGTAGAATATCAAGCAGATTATCGCGTTCTTAGTGTTTTCAGTAATCCATTCCAGCTCTGTTTCTATAACACAACTCCTAACGCATGGACACTAGCGTTACGAATGGGCACTGTCCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAATAGAGGAAACCCCGTTAAAGAAAACGCGACCCTCACATTTGGAACTAACGGAAATCTTGTATTGGCGGATGCTGACGGTCGAATCGCTTGGCAGACCAACACAGCCAATAAAGGAGTGACAGGGTTCAAGTTGTTACCTAATGGTAACATGGTGCTACATGACTCTAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGATACTTTACTAGTGAGCCAAACTCTC</genome_strand>
        <mrna_strand>AACATGTCTCCTTCATGGCCTACTACACTTCTTGCCTCTCTATTTCTCTTCTCCCAAATATTTTCTTGCATTGCCCAAGTTCCACTTGAAAACACCTTTAAATTCGTCAACGAAGGCGAATTAGGACCTTATGTCGTAGAATATCAAGCAGATTATCGCGTTCTTAGTGTTTTCAGTAATCCATTCCAGCTCTGTTTCTATAACACAACTCCTAACGCATGGACACTAGCGTTACGAATGGGCACTGTCCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAATAGAGGAAACCCCGTTAAAGAAAACGCGACCCTCACATTTGGAACTAACGGAAATCTTGTATTGGCGGATGCTGACGGTCGAATCGCTTGGCAGACCAACACAGCCAATAAAGGAGTGACAGGGTTCAAGTTGTTACCTAATGGTAACATGGTGCTACATGACTCTAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGATACTTTACTAGTGAGCCAAACTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E214265" ref_strand="+" ref_description="SGN-E214265 [cLEC-77-L11]">
      <seq>atgtctccttcatggcctactacacttcttgcctctctatttctcttctcccaaatattttcttgcattgcccaagttccacttgaaaacacctttaaattcgtcaacgaaggcgaattaggaccttatgtcgtagaatatcaagcagattatcgcgttcttagtgttttcagtaatccattccagctctgtttctataacacaactcctaacgcatggacactagcgttacgaatgggcactgtccgttctgaatcactcatgcgttgggtgtgggaagcaaatagaggaaaccccgttaaagaaaacgcgaccctcacatttggaactaacggaaatcttgtattggcggatgctgacggtcgaatcgcttggcagaccaacacagccaataaaggagtgacagggttcaagttgttacctaatggtaacatggtgctacatgactctaaaggtaaattcgtctggcagagtttcaactatcccactgatactttactagtgagccaaactctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="20271" stop="19156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19971" g_stop="19456" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E214265" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19971" e_stop="19456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCTCCTTCATGGCCTACTACACTTCTTGCCTCTCTATTTCTCTTCTCCCAAATATTTTCTTGCATTGCCCAAGTTCCACTTGAAAACACCTTTAAATTCGTCAACGAAGGCGAATTAGGACCTTATGTCGTAGAATATCAAGCAGATTATCGCGTTCTTAGTGTTTTCAGTAATCCATTCCAGCTCTGTTTCTATAACACAACTCCTAACGCATGGACACTAGCGTTACGAATGGGCACTGTCCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAATAGAGGAAACCCCGTTAAAGAAAACGCGACCCTCACATTTGGAACTAACGGAAATCTTGTATTGGCGGATGCTGACGGTCGAATCGCTTGGCAGACCAACACAGCCAATAAAGGAGTGACAGGGTTCAAGTTGTTACCTAATGGTAACATGGTGCTACATGACTCTAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGATACTTTACTAGTGAGCCAAACTCTC</genome_strand>
        <mrna_strand>ATGTCTCCTTCATGGCCTACTACACTTCTTGCCTCTCTATTTCTCTTCTCCCAAATATTTTCTTGCATTGCCCAAGTTCCACTTGAAAACACCTTTAAATTCGTCAACGAAGGCGAATTAGGACCTTATGTCGTAGAATATCAAGCAGATTATCGCGTTCTTAGTGTTTTCAGTAATCCATTCCAGCTCTGTTTCTATAACACAACTCCTAACGCATGGACACTAGCGTTACGAATGGGCACTGTCCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAATAGAGGAAACCCCGTTAAAGAAAACGCGACCCTCACATTTGGAACTAACGGAAATCTTGTATTGGCGGATGCTGACGGTCGAATCGCTTGGCAGACCAACACAGCCAATAAAGGAGTGACAGGGTTCAAGTTGTTACCTAATGGTAACATGGTGCTACATGACTCTAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGATACTTTACTAGTGAGCCAAACTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E213767" ref_strand="+" ref_description="SGN-E213767 [cLEC-76-G9]">
      <seq>acttgaaaacacctttaaattcgtcaacgaaggcgaattaggaccttatgtcgtagaatatcaagcagattatcgcgttcttagtgttttcagtaatccattccagctctgtttctataacacaactcctaacgcatggacactagcgttacgaatgggcactgtccgttctgaatcactcatgcgttgggtgtgggaagcaaatagaggaaaccccgttaaagaaaacgcgaccctcacatttggaactaacggaaatcttgtattggcggatgctgacggtcgaatcgcttggcagaccaacacagccaataaaggagtgacagggttcaagttgttacctaatggtaacatggtgctacatgactctaaaggtaaattcgtctggcagagtttcaactatcccactgatactttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="20191" stop="19172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19891" g_stop="19472" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E213767" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19891" e_stop="19472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGAAAACACCTTTAAATTCGTCAACGAAGGCGAATTAGGACCTTATGTCGTAGAATATCAAGCAGATTATCGCGTTCTTAGTGTTTTCAGTAATCCATTCCAGCTCTGTTTCTATAACACAACTCCTAACGCATGGACACTAGCGTTACGAATGGGCACTGTCCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAATAGAGGAAACCCCGTTAAAGAAAACGCGACCCTCACATTTGGAACTAACGGAAATCTTGTATTGGCGGATGCTGACGGTCGAATCGCTTGGCAGACCAACACAGCCAATAAAGGAGTGACAGGGTTCAAGTTGTTACCTAATGGTAACATGGTGCTACATGACTCTAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGATACTTTACT</genome_strand>
        <mrna_strand>ACTTGAAAACACCTTTAAATTCGTCAACGAAGGCGAATTAGGACCTTATGTCGTAGAATATCAAGCAGATTATCGCGTTCTTAGTGTTTTCAGTAATCCATTCCAGCTCTGTTTCTATAACACAACTCCTAACGCATGGACACTAGCGTTACGAATGGGCACTGTCCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAATAGAGGAAACCCCGTTAAAGAAAACGCGACCCTCACATTTGGAACTAACGGAAATCTTGTATTGGCGGATGCTGACGGTCGAATCGCTTGGCAGACCAACACAGCCAATAAAGGAGTGACAGGGTTCAAGTTGTTACCTAATGGTAACATGGTGCTACATGACTCTAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGATACTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E205586" ref_strand="+" ref_description="SGN-E205586 [cLEC-21-I4]">
      <seq>aacaaactaaacatgtctccttcatggcctactacacttcttgcctctctatttctcttctcccaaatattttcttgcattgcccaagttccacttgaaaacacctttaaattcgtcaacgaaggcgaattaggaccttatgtcgtagaatatcaagcagattatcgcgttcttagtgttttcagtaatccattccagctctgtttctataacacaactcctaacgcatggacactagcgttacgaatgggcactgtccgttctgaatcactcatgcgttgggtgtgggaagcaaatagaggaaaccccgttaaagaaaacgcgaccctcacatttggaactaacggaaatcttgtattggcggatgctgacggtcgaatcgcttggcagaccaacacagccaataaaggagtgacagggttcaagttgttacctaatggtaacatggtgctacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="20283" stop="19227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19983" g_stop="19527" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E205586" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19983" e_stop="19527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACTAAACATGTCTCCTTCATGGCCTACTACACTTCTTGCCTCTCTATTTCTCTTCTCCCAAATATTTTCTTGCATTGCCCAAGTTCCACTTGAAAACACCTTTAAATTCGTCAACGAAGGCGAATTAGGACCTTATGTCGTAGAATATCAAGCAGATTATCGCGTTCTTAGTGTTTTCAGTAATCCATTCCAGCTCTGTTTCTATAACACAACTCCTAACGCATGGACACTAGCGTTACGAATGGGCACTGTCCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAATAGAGGAAACCCCGTTAAAGAAAACGCGACCCTCACATTTGGAACTAACGGAAATCTTGTATTGGCGGATGCTGACGGTCGAATCGCTTGGCAGACCAACACAGCCAATAAAGGAGTGACAGGGTTCAAGTTGTTACCTAATGGTAACATGGTGCTACATG</genome_strand>
        <mrna_strand>AACAAACTAAACATGTCTCCTTCATGGCCTACTACACTTCTTGCCTCTCTATTTCTCTTCTCCCAAATATTTTCTTGCATTGCCCAAGTTCCACTTGAAAACACCTTTAAATTCGTCAACGAAGGCGAATTAGGACCTTATGTCGTAGAATATCAAGCAGATTATCGCGTTCTTAGTGTTTTCAGTAATCCATTCCAGCTCTGTTTCTATAACACAACTCCTAACGCATGGACACTAGCGTTACGAATGGGCACTGTCCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAATAGAGGAAACCCCGTTAAAGAAAACGCGACCCTCACATTTGGAACTAACGGAAATCTTGTATTGGCGGATGCTGACGGTCGAATCGCTTGGCAGACCAACACAGCCAATAAAGGAGTGACAGGGTTCAAGTTGTTACCTAATGGTAACATGGTGCTACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E203747" ref_strand="+" ref_description="SGN-E203747 [cLEC-17-E10]">
      <seq>cttcatggcctactacacttcttgcctctctatttctcttctcccaaatattttcttgcattgcccaagttccacttgaaaacacctttaaattcgtcaacgaaggcgaattaggaccttatgtcgtagaatatcaagcagattatcgcgttcttagtgttttcagtaatccattccagctctgtttctataacacaactcctaacgcatggacactagcgttacgaatgggcactgtccgttctgaatcactcatgcgttgggtgtgggaagcaaatagaggaaaccccgttaaagaaaacgcgaccctcacatttggaactaacggaaatcttgtattggcggatgctgacggtcgaatcgcttggcagaccaacacagccaataaaggagtgacagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="20264" stop="19265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19964" g_stop="19565" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E203747" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19964" e_stop="19565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATGGCCTACTACACTTCTTGCCTCTCTATTTCTCTTCTCCCAAATATTTTCTTGCATTGCCCAAGTTCCACTTGAAAACACCTTTAAATTCGTCAACGAAGGCGAATTAGGACCTTATGTCGTAGAATATCAAGCAGATTATCGCGTTCTTAGTGTTTTCAGTAATCCATTCCAGCTCTGTTTCTATAACACAACTCCTAACGCATGGACACTAGCGTTACGAATGGGCACTGTCCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAATAGAGGAAACCCCGTTAAAGAAAACGCGACCCTCACATTTGGAACTAACGGAAATCTTGTATTGGCGGATGCTGACGGTCGAATCGCTTGGCAGACCAACACAGCCAATAAAGGAGTGACAGG</genome_strand>
        <mrna_strand>CTTCATGGCCTACTACACTTCTTGCCTCTCTATTTCTCTTCTCCCAAATATTTTCTTGCATTGCCCAAGTTCCACTTGAAAACACCTTTAAATTCGTCAACGAAGGCGAATTAGGACCTTATGTCGTAGAATATCAAGCAGATTATCGCGTTCTTAGTGTTTTCAGTAATCCATTCCAGCTCTGTTTCTATAACACAACTCCTAACGCATGGACACTAGCGTTACGAATGGGCACTGTCCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAATAGAGGAAACCCCGTTAAAGAAAACGCGACCCTCACATTTGGAACTAACGGAAATCTTGTATTGGCGGATGCTGACGGTCGAATCGCTTGGCAGACCAACACAGCCAATAAAGGAGTGACAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E203719" ref_strand="+" ref_description="SGN-E203719 [cLEC-17-E9]">
      <seq>cttcatggcctactacacttcttgcctctctatttctcttctcccaaatattttcttgcattgcccaagttccacttgaaaacacctttaaattcgtcaacgaaggcgaattaggaccttatgtcgtagaatatcaagcagattatcgcgttcttagtgttttcagtaatccattccagctctgtttctataacacaactcctaacgcatggacactagcgttacgaatgggcactgtccgttctgaatcactcatgcgttgggtgtgggaagcaaatagaggaaaccccgttaaagaaaacgcgaccctcacatttggaactaacggaaatcttgtattggcggatgctgacggtcgaatcgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="20264" stop="19298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19964" g_stop="19598" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E203719" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19964" e_stop="19598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATGGCCTACTACACTTCTTGCCTCTCTATTTCTCTTCTCCCAAATATTTTCTTGCATTGCCCAAGTTCCACTTGAAAACACCTTTAAATTCGTCAACGAAGGCGAATTAGGACCTTATGTCGTAGAATATCAAGCAGATTATCGCGTTCTTAGTGTTTTCAGTAATCCATTCCAGCTCTGTTTCTATAACACAACTCCTAACGCATGGACACTAGCGTTACGAATGGGCACTGTCCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAATAGAGGAAACCCCGTTAAAGAAAACGCGACCCTCACATTTGGAACTAACGGAAATCTTGTATTGGCGGATGCTGACGGTCGAATCGCTTG</genome_strand>
        <mrna_strand>CTTCATGGCCTACTACACTTCTTGCCTCTCTATTTCTCTTCTCCCAAATATTTTCTTGCATTGCCCAAGTTCCACTTGAAAACACCTTTAAATTCGTCAACGAAGGCGAATTAGGACCTTATGTCGTAGAATATCAAGCAGATTATCGCGTTCTTAGTGTTTTCAGTAATCCATTCCAGCTCTGTTTCTATAACACAACTCCTAACGCATGGACACTAGCGTTACGAATGGGCACTGTCCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAATAGAGGAAACCCCGTTAAAGAAAACGCGACCCTCACATTTGGAACTAACGGAAATCTTGTATTGGCGGATGCTGACGGTCGAATCGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E206756" ref_strand="+" ref_description="SGN-E206756 [cLEC-31-L17]">
      <seq>cttcttgcctctctatttctcttctcccaaatattttcttgcattgcccaagttccacttgaaaacacctttaaattcgtcaacgaaggcgaattaggaccttatgtcgtagaatatcaagcagattatcgcgttcttagtgttttcagtaatccattccagctctgtttctataacacaactcctaacgcatggacactagcgttacgaatgggcactgtccgttctgaatcactcatgcgttgggtgtgggaagcaaatagaggaaaccccgttaaagaaaacgcgaccctcacatttggaactaacggaaatcttgtattggcggatgctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="20247" stop="19312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19947" g_stop="19612" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E206756" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19947" e_stop="19612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTGCCTCTCTATTTCTCTTCTCCCAAATATTTTCTTGCATTGCCCAAGTTCCACTTGAAAACACCTTTAAATTCGTCAACGAAGGCGAATTAGGACCTTATGTCGTAGAATATCAAGCAGATTATCGCGTTCTTAGTGTTTTCAGTAATCCATTCCAGCTCTGTTTCTATAACACAACTCCTAACGCATGGACACTAGCGTTACGAATGGGCACTGTCCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAATAGAGGAAACCCCGTTAAAGAAAACGCGACCCTCACATTTGGAACTAACGGAAATCTTGTATTGGCGGATGCTGAC</genome_strand>
        <mrna_strand>CTTCTTGCCTCTCTATTTCTCTTCTCCCAAATATTTTCTTGCATTGCCCAAGTTCCACTTGAAAACACCTTTAAATTCGTCAACGAAGGCGAATTAGGACCTTATGTCGTAGAATATCAAGCAGATTATCGCGTTCTTAGTGTTTTCAGTAATCCATTCCAGCTCTGTTTCTATAACACAACTCCTAACGCATGGACACTAGCGTTACGAATGGGCACTGTCCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAATAGAGGAAACCCCGTTAAAGAAAACGCGACCCTCACATTTGGAACTAACGGAAATCTTGTATTGGCGGATGCTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E201090" ref_strand="+" ref_description="SGN-E201090 [cLEC-10-M19]">
      <seq>aacatgtctccttcatggcctactacacttcttgcctctctatttctcttctcccaaatattttcttgcattgcccaagttccacttgaaaacacctttaaattcgtcaacgaaggcgaattaggaccttatgtcgtagaatatcaagcagattatcgcgttcttagtgttttcagtaatccattccagctctgtttctataacacaactcctaacgcatggacactagcgttacgaatgggcactgtccgttctgaatcactcatgcgttgggtgtgggaagcaaatagaggaaaccccgttaaagaaaacgcgaccctcacatttggaactaacggaaatcttgtattggcggatgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="20274" stop="19313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19974" g_stop="19613" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E201090" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19974" e_stop="19613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATGTCTCCTTCATGGCCTACTACACTTCTTGCCTCTCTATTTCTCTTCTCCCAAATATTTTCTTGCATTGCCCAAGTTCCACTTGAAAACACCTTTAAATTCGTCAACGAAGGCGAATTAGGACCTTATGTCGTAGAATATCAAGCAGATTATCGCGTTCTTAGTGTTTTCAGTAATCCATTCCAGCTCTGTTTCTATAACACAACTCCTAACGCATGGACACTAGCGTTACGAATGGGCACTGTCCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAATAGAGGAAACCCCGTTAAAGAAAACGCGACCCTCACATTTGGAACTAACGGAAATCTTGTATTGGCGGATGCTGA</genome_strand>
        <mrna_strand>AACATGTCTCCTTCATGGCCTACTACACTTCTTGCCTCTCTATTTCTCTTCTCCCAAATATTTTCTTGCATTGCCCAAGTTCCACTTGAAAACACCTTTAAATTCGTCAACGAAGGCGAATTAGGACCTTATGTCGTAGAATATCAAGCAGATTATCGCGTTCTTAGTGTTTTCAGTAATCCATTCCAGCTCTGTTTCTATAACACAACTCCTAACGCATGGACACTAGCGTTACGAATGGGCACTGTCCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAATAGAGGAAACCCCGTTAAAGAAAACGCGACCCTCACATTTGGAACTAACGGAAATCTTGTATTGGCGGATGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E204949" ref_strand="+" ref_description="SGN-E204949 [cLEC-16-M11]">
      <seq>acatgtctccttcatggcctactacacttcttgcctctctatttctcttctcccaaatattttcttgcattgcccaagttccacttgaaaacacctttaaattcgtcaacgaaggcgaattatgaccttatgtcgtagaatatcaagcagattatcgcgttcttagtgttttcagtaatccattccagctctgtttgtataacacaactcctaacgcatggacactagcgttacgaatgggcactgtccgttctgaatcactcatgcgttgggtgtgggaagcaaatagaggaaaccccgttaaagaaaacgcgaccctcacatttggaactaacggaaatcttgtattggcggatgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="20273" stop="19313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19973" g_stop="19613" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E204949" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19973" e_stop="19613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGTCTCCTTCATGGCCTACTACACTTCTTGCCTCTCTATTTCTCTTCTCCCAAATATTTTCTTGCATTGCCCAAGTTCCACTTGAAAACACCTTTAAATTCGTCAACGAAGGCGAATTAGGACCTTATGTCGTAGAATATCAAGCAGATTATCGCGTTCTTAGTGTTTTCAGTAATCCATTCCAGCTCTGTTTCTATAACACAACTCCTAACGCATGGACACTAGCGTTACGAATGGGCACTGTCCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAATAGAGGAAACCCCGTTAAAGAAAACGCGACCCTCACATTTGGAACTAACGGAAATCTTGTATTGGCGGATGCTGA</genome_strand>
        <mrna_strand>ACATGTCTCCTTCATGGCCTACTACACTTCTTGCCTCTCTATTTCTCTTCTCCCAAATATTTTCTTGCATTGCCCAAGTTCCACTTGAAAACACCTTTAAATTCGTCAACGAAGGCGAATTATGACCTTATGTCGTAGAATATCAAGCAGATTATCGCGTTCTTAGTGTTTTCAGTAATCCATTCCAGCTCTGTTTGTATAACACAACTCCTAACGCATGGACACTAGCGTTACGAATGGGCACTGTCCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAATAGAGGAAACCCCGTTAAAGAAAACGCGACCCTCACATTTGGAACTAACGGAAATCTTGTATTGGCGGATGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E209415" ref_strand="+" ref_description="SGN-E209415 [cLEC-53-H23]">
      <seq>aaactaaacatgtctccttcatggcctactacacttcttgcctatctatttctcttctccccaatattttcttgcattgcccaagttccacttgaaaacacctttaaattcgtcaacgaaggcgaattaggaccttatgtccgataatatcaagcagattatcgcgttcttagtgttttcagtaatccattccagctctgtttctataacacaactcctaacgcatggacactagcgttaccaatgggcactgtccgttctgaatcactcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="20280" stop="19408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19980" g_stop="19708" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E209415" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19980" e_stop="19708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTAAACATGTCTCCTTCATGGCCTACTACACTTCTTGCCTCTCTATTTCTCTTCTCCCAAATATTTTCTTGCATTGCCCAAGTTCCACTTGAAAACACCTTTAAATTCGTCAACGAAGGCGAATTAGGACCTTATGTCGTAGAATATCAAGCAGATTATCGCGTTCTTAGTGTTTTCAGTAATCCATTCCAGCTCTGTTTCTATAACACAACTCCTAACGCATGGACACTAGCGTTACGAATGGGCACTGTCCGTTCTGAATCACTCATG</genome_strand>
        <mrna_strand>AAACTAAACATGTCTCCTTCATGGCCTACTACACTTCTTGCCTATCTATTTCTCTTCTCCCCAATATTTTCTTGCATTGCCCAAGTTCCACTTGAAAACACCTTTAAATTCGTCAACGAAGGCGAATTAGGACCTTATGTCCGATAATATCAAGCAGATTATCGCGTTCTTAGTGTTTTCAGTAATCCATTCCAGCTCTGTTTCTATAACACAACTCCTAACGCATGGACACTAGCGTTACCAATGGGCACTGTCCGTTCTGAATCACTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E203512" ref_strand="+" ref_description="SGN-E203512 [cLEC-15-E11]">
      <seq>aactaaacatgtctccttcatggcctactacacttcttgcctctctatttctcttctcccaaatattttcttgcattgcccaagttccacttgaaaacacctttaaattcgtcaacgaaggcgaattaggaccttatgtcgtagaatatcaagcagattatcgcgttcttagtgttttcagtaatccattccagctctgtttctataacacaactcctaacgcatggacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="20279" stop="19449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19979" g_stop="19749" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E203512" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>231</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19979" e_stop="19749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTAAACATGTCTCCTTCATGGCCTACTACACTTCTTGCCTCTCTATTTCTCTTCTCCCAAATATTTTCTTGCATTGCCCAAGTTCCACTTGAAAACACCTTTAAATTCGTCAACGAAGGCGAATTAGGACCTTATGTCGTAGAATATCAAGCAGATTATCGCGTTCTTAGTGTTTTCAGTAATCCATTCCAGCTCTGTTTCTATAACACAACTCCTAACGCATGGACAC</genome_strand>
        <mrna_strand>AACTAAACATGTCTCCTTCATGGCCTACTACACTTCTTGCCTCTCTATTTCTCTTCTCCCAAATATTTTCTTGCATTGCCCAAGTTCCACTTGAAAACACCTTTAAATTCGTCAACGAAGGCGAATTAGGACCTTATGTCGTAGAATATCAAGCAGATTATCGCGTTCTTAGTGTTTTCAGTAATCCATTCCAGCTCTGTTTCTATAACACAACTCCTAACGCATGGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E374970" ref_strand="+" ref_description="SGN-E374970 [TUS-15-O15]">
      <seq>ttttttttttaatacaaaaataattatatatatatatatatcaaaataatacactctcttaattcaaccaaaacataatattttttttcaaaagtggaataaagaaaaataattaacattaaataggagttaccactcatttattggactactagctgcatgtggacccacttattgtactgcacacttatcctttatcttataaatttacgttcacagcacgataatataattcgtgaaaaagaatagtgtgtatgtagatttatacgtttcgtttatgaaacgttttaaatcctactgtaagttactttccaacggaattcatctgcttcttcatctctaacgaaagtataggcctttaaatttccatcaatttcaagtctaaaatatgtcaatgttgtgttgtatttagtaaatgccatcacatgtgaacttctttgtgttgattttgcaaatctataatccaatttcaatctttgattcccactatttaattttatcgattccaatgtgttatttccataatcgaaccaagctaattccacgtcaaccttgtttcccttgtagactgcaaacaatctcggctgcaccaccaagctataaggcccgttcgcattctttttcaccgaggcccggctcacaagcttattcgggccggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="24618" stop="25873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24914" g_stop="25573" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E374970" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24914" e_stop="25573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATATTTCAATACAAAAATAATTATATATATATATATATCAAAATAATACACTCTCTTAATTCAACCAAAACATAATATTTTTTTTCAAAAGTGGAATAAAGAAAAATAATTAACATTAAATAGGAGTTACCACTCATTTATTGGACTACTAGCTGCATGTGGACCCACTTATTGTACTGCACACTTATCCTTTATCTTATAGATTTACGTTCACAGCACGATAATATAATTCGTGAAAAAGAATAGTGTGTATGTAGATTTATACGTTTCGTTTATGAAACGTTTTAAATCCTACTGTAAGTTACTTTCCAACGGAATTCATCTGCTTCTTCATCTCTAACGAAAGTATAGGCCTTTAAATTTCCATCAATTTCAAGTCTAAGATATGTCAATGTTGTGTTGTATTTAGTAAATGCCATCACATGTGAACTTCTTTGTGTTGATTTTGCAAATCTATAATCCAATTTCAATCTTTGATTCCCACTATTTAATTTTATCGATTCCAATGTGTTATTTCCATAATCGAACCAAGCTAATTCCACGTCAACCTTGTTTCCCTTGTAGACTGCAAACAATCTCGGCTGCACCACCAAGCTATAAGGCCCGTTCGCATTCTTTTTCACCGAGGCCCGGCTCACAAGCTTATTCGGGCCGGAC</genome_strand>
        <mrna_strand>TTTTTTTTTTAATACAAAAATAATTATATATATATATATATCAAAATAATACACTCTCTTAATTCAACCAAAACATAATATTTTTTTTCAAAAGTGGAATAAAGAAAAATAATTAACATTAAATAGGAGTTACCACTCATTTATTGGACTACTAGCTGCATGTGGACCCACTTATTGTACTGCACACTTATCCTTTATCTTATAAATTTACGTTCACAGCACGATAATATAATTCGTGAAAAAGAATAGTGTGTATGTAGATTTATACGTTTCGTTTATGAAACGTTTTAAATCCTACTGTAAGTTACTTTCCAACGGAATTCATCTGCTTCTTCATCTCTAACGAAAGTATAGGCCTTTAAATTTCCATCAATTTCAAGTCTAAAATATGTCAATGTTGTGTTGTATTTAGTAAATGCCATCACATGTGAACTTCTTTGTGTTGATTTTGCAAATCTATAATCCAATTTCAATCTTTGATTCCCACTATTTAATTTTATCGATTCCAATGTGTTATTTCCATAATCGAACCAAGCTAATTCCACGTCAACCTTGTTTCCCTTGTAGACTGCAAACAATCTCGGCTGCACCACCAAGCTATAAGGCCCGTTCGCATTCTTTTTCACCGAGGCCCGGCTCACAAGCTTATTCGGGCCGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E395912" ref_strand="+" ref_description="SGN-E395912 [TUS-18-F17]">
      <seq>ttttttttttcttacaaaaataattatatatatatatatatcaaaataatacactctcttaattcaaccaaaacataatattttttttcaaaagtggaataaagaaaaataattaacattaaataggagttaccactcatttattggactactagctgcatgtggacccacttattgtactgcacacttatcctttatcttatagatttacgttcacagcacgataatataattcgtgaaaaagaatagtgtgtatgtaaatttatacgtttcgtttatgaaacgttttaaatcctactgtaagttactttccaacggaattcatctgcttcttcatctctaacgaaagtataggcctttaaatttccatcaatttcaagtctaagatatgtcaatgttgtgttgtatttactaaatgccaccaaatgtgaacttctttgtgttgattttgaacaacctggggggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="24626" stop="25671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24914" g_stop="25363" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E395912" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24914" e_stop="25363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATATTTCAATACAAAAATAATTATATATATATATATATCAAAATAATACACTCTCTTAATTCAACCAAAACATAATATTTTTTTTCAAAAGTGGAATAAAGAAAAATAATTAACATTAAATAGGAGTTACCACTCATTTATTGGACTACTAGCTGCATGTGGACCCACTTATTGTACTGCACACTTATCCTTTATCTTATAGATTTACGTTCACAGCACGATAATATAATTCGTGAAAAAGAATAGTGTGTATGTAGATTTATACGTTTCGTTTATGAAACGTTTTAAATCCTACTGTAAGTTACTTTCCAACGGAATTCATCTGCTTCTTCATCTCTAACGAAAGTATAGGCCTTTAAATTTCCATCAATTTCAAGTCTAAGATATGTCAATGTTGTGTTGTATTTAGTAAATGCCATCACATGTGAACTTCTTTGTGTTGATTTT</genome_strand>
        <mrna_strand>TTTTTTTTTTCTTACAAAAATAATTATATATATATATATATCAAAATAATACACTCTCTTAATTCAACCAAAACATAATATTTTTTTTCAAAAGTGGAATAAAGAAAAATAATTAACATTAAATAGGAGTTACCACTCATTTATTGGACTACTAGCTGCATGTGGACCCACTTATTGTACTGCACACTTATCCTTTATCTTATAGATTTACGTTCACAGCACGATAATATAATTCGTGAAAAAGAATAGTGTGTATGTAAATTTATACGTTTCGTTTATGAAACGTTTTAAATCCTACTGTAAGTTACTTTCCAACGGAATTCATCTGCTTCTTCATCTCTAACGAAAGTATAGGCCTTTAAATTTCCATCAATTTCAAGTCTAAGATATGTCAATGTTGTGTTGTATTTACTAAATGCCACCAAATGTGAACTTCTTTGTGTTGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E213202" ref_strand="+" ref_description="SGN-E213202 [cLEC-72-L13]">
      <seq>ttttcgatacaaaaataattatatatatatatatatcaaaataatacactctcttaattcaaccaaaacataatattttttttcaaaagtggaataaagaaaaatacttaacattaaataggagttaccactcatttattggactactagctgcatgtggacccacttattgtactgcacacttatcctttatcttatagatttacgttcacagcacgataatataattcgtgaaaaagaatagtgtgtatgtaaatttatacgtttcgtatatgaaacgttttaaatcctactgtaagttactttccaacggaattcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="24620" stop="25539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24919" g_stop="25239" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E213202" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24919" e_stop="25239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAATACAAAAATAATTATATATATATATATATCAAAATAATACACTCTCTTAATTCAACCAAAACATAATATTTTTTTTCAAAAGTGGAATAAAGAAAAATAATTAACATTAAATAGGAGTTACCACTCATTTATTGGACTACTAGCTGCATGTGGACCCACTTATTGTACTGCACACTTATCCTTTATCTTATAGATTTACGTTCACAGCACGATAATATAATTCGTGAAAAAGAATAGTGTGTATGTAGATTTATACGTTTCGTTTATGAAACGTTTTAAATCCTACTGTAAGTTACTTTCCAACGGAATTCATC</genome_strand>
        <mrna_strand>TTTTCGATACAAAAATAATTATATATATATATATATCAAAATAATACACTCTCTTAATTCAACCAAAACATAATATTTTTTTTCAAAAGTGGAATAAAGAAAAATACTTAACATTAAATAGGAGTTACCACTCATTTATTGGACTACTAGCTGCATGTGGACCCACTTATTGTACTGCACACTTATCCTTTATCTTATAGATTTACGTTCACAGCACGATAATATAATTCGTGAAAAAGAATAGTGTGTATGTAAATTTATACGTTTCGTATATGAAACGTTTTAAATCCTACTGTAAGTTACTTTCCAACGGAATTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E212716" ref_strand="-" ref_description="SGN-E212716 [cLEC-73-F15]">
      <seq>agtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttatagcttggtggtgcagccgagattgtttgcagtctacaagggaaacaaggttgacgtggaattagcttggttcgattatggaaataacacattggaatcgataaaattaaatagtgggaatcaaagattgaaattggattatagatttgcaaaatcaacacaaagaagttcacatgtgatggcatttactaaatacaacacaacattgacatatcttagacttgaaattgatggaaatttaaaggcctatactttcgttagagatgaagaagcagatgaattccgttggaaagtaacttacagtaggatttaaaacgtttcataaacgaaacgtataaatctacatacacactattctttttcacgaattatattatcgtgctgtgaacgtaaatctataagataaaggataagtgtgcagtacaataagtgggtccacatgcagctagtagtccaataaatgagtggtaactcctatttaatgttaattatttttctttattccacttttgaaaaaaaatattatgttttggttgaattaagagagtgtattattttgatatatatatatatataattatttttgtatgaaaaaaaaaaaaaaaaaaccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="25894" stop="24618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25594" g_stop="24926" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="672" polyA_stop="690"/>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E212716" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212716" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25594" e_stop="24926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTTAGACTTGAAATTGATGGAAATTTAAAGGCCTATACTTTCGTTAGAGATGAAGAAGCAGATGAATTCCGTTGGAAAGTAACTTACAGTAGGATTTAAAACGTTTCATAAACGAAACGTATAAATCTACATACACACTATTCTTTTTCACGAATTATATTATCGTGCTGTGAACGTAAATCTATAAGATAAAGGATAAGTGTGCAGTACAATAAGTGGGTCCACATGCAGCTAGTAGTCCAATAAATGAGTGGTAACTCCTATTTAATGTTAATTATTTTTCTTTATTCCACTTTTGAAAAAAAATATTATGTTTTGGTTGAATTAAGAGAGTGTATTATTTTGATATATATATATATATAATTATTTTTGTA</genome_strand>
        <mrna_strand>AGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTTAGACTTGAAATTGATGGAAATTTAAAGGCCTATACTTTCGTTAGAGATGAAGAAGCAGATGAATTCCGTTGGAAAGTAACTTACAGTAGGATTTAAAACGTTTCATAAACGAAACGTATAAATCTACATACACACTATTCTTTTTCACGAATTATATTATCGTGCTGTGAACGTAAATCTATAAGATAAAGGATAAGTGTGCAGTACAATAAGTGGGTCCACATGCAGCTAGTAGTCCAATAAATGAGTGGTAACTCCTATTTAATGTTAATTATTTTTCTTTATTCCACTTTTGAAAAAAAATATTATGTTTTGGTTGAATTAAGAGAGTGTATTATTTTGATATATATATATATATAATTATTTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E378870" ref_strand="+" ref_description="SGN-E378870 [TUS-3-A21]">
      <seq>atatatatcaaaataatacactctcataattccccgagacataatattttttttccaaagtggaataaagaaaaataattaacattaaataggagttaccactcatttattggactactagctgcatgtggacccacttattgtactgcacacttatcctttatcttatagatttacgttcacagcacgataatataattcgtgaaaaagaatagtgtgtatgtagatttatacgtttcgtttatgaaacgttttaaatcctactgtaagttactttccaacggaattcatctgcttcttcatctctaacgaaagtataggcctttaaatttccatcaatttcaagtctaagatatgtcaatgttgtgttgtatttagtaaatgccatcacatgtgaacttctttgtgttgattttgcaaatctataatccaatttcaatctttgattcccactatttaattttatcgattccaatgtgttatttccataatcgaaccaagctaattccacgtcaaccttgtttcccttgtagactgcaaacaatctcggctgcaccaccaagctataaggcccgttcgcattctttttcaccgaggcccggctcacaagcttattcgggccggacaatctgagagtttggcccactagtaaagtgtcagtgggatagttgaaactctgccagacgaatttaccttttttgtcatgtagcaccatgttaccgttaggtaacaaacttgaccctgtcacccccttattggccgtgttgctctgccaagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="24647" stop="26026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24947" g_stop="25726" g_length="780"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="779" r_length="779" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E378870" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24947" e_stop="25726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATATCAAAATAATACACTCTCTTAATTCAACCAAAACATAATATTTTTTTTCAAAAGTGGAATAAAGAAAAATAATTAACATTAAATAGGAGTTACCACTCATTTATTGGACTACTAGCTGCATGTGGACCCACTTATTGTACTGCACACTTATCCTTTATCTTATAGATTTACGTTCACAGCACGATAATATAATTCGTGAAAAAGAATAGTGTGTATGTAGATTTATACGTTTCGTTTATGAAACGTTTTAAATCCTACTGTAAGTTACTTTCCAACGGAATTCATCTGCTTCTTCATCTCTAACGAAAGTATAGGCCTTTAAATTTCCATCAATTTCAAGTCTAAGATATGTCAATGTTGTGTTGTATTTAGTAAATGCCATCACATGTGAACTTCTTTGTGTTGATTTTGCAAATCTATAATCCAATTTCAATCTTTGATTCCCACTATTTAATTTTATCGATTCCAATGTGTTATTTCCATAATCGAACCAAGCTAATTCCACGTCAACCTTGTTTCCCTTGTAGACTGCAAACAATCTCGGCTGCACCACCAAGCTATAAGGCCCGTTCGCATTCTTTTTCACCGAGGCCCGGCTCACAAGCTTATTCGGGCCGGACAATCTGAGAGTTTGGCCCACTAGTAAAGTGTCAGTGGGATAGTTGAAACTCTGCCAGACGAATTTACCTTTTTTGTCATGTAGCACCATGTTACCGTTAGGTAACAACTTGAACCCTGTCACCCCCTTATTGGCCGTGTTGCTCTGCCAAGCG</genome_strand>
        <mrna_strand>ATATATATCAAAATAATACACTCTCATAATTC-CCCGAGACATAATATTTTTTTTCCAAAGTGGAATAAAGAAAAATAATTAACATTAAATAGGAGTTACCACTCATTTATTGGACTACTAGCTGCATGTGGACCCACTTATTGTACTGCACACTTATCCTTTATCTTATAGATTTACGTTCACAGCACGATAATATAATTCGTGAAAAAGAATAGTGTGTATGTAGATTTATACGTTTCGTTTATGAAACGTTTTAAATCCTACTGTAAGTTACTTTCCAACGGAATTCATCTGCTTCTTCATCTCTAACGAAAGTATAGGCCTTTAAATTTCCATCAATTTCAAGTCTAAGATATGTCAATGTTGTGTTGTATTTAGTAAATGCCATCACATGTGAACTTCTTTGTGTTGATTTTGCAAATCTATAATCCAATTTCAATCTTTGATTCCCACTATTTAATTTTATCGATTCCAATGTGTTATTTCCATAATCGAACCAAGCTAATTCCACGTCAACCTTGTTTCCCTTGTAGACTGCAAACAATCTCGGCTGCACCACCAAGCTATAAGGCCCGTTCGCATTCTTTTTCACCGAGGCCCGGCTCACAAGCTTATTCGGGCCGGACAATCTGAGAGTTTGGCCCACTAGTAAAGTGTCAGTGGGATAGTTGAAACTCTGCCAGACGAATTTACCTTTTTTGTCATGTAGCACCATGTTACCGTTAGGTAACAAACTTGACCCTGTCACCCCCTTATTGGCCGTGTTGCTCTGCCAAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E288437" ref_strand="+" ref_description="SGN-E288437 [cLES-16-F24]">
      <seq>tatatcaaaataatacactctcttaattcaaccaaaacataatattttttttcaaaagtggaataaagaaaaataattaacattaaataggagttaccactcatttattggactactagctgcatgtggacccacttattgtactgcacacttatcctttatcttatagatttacgttcacagcacgataatataattcgtgaaaaagaatagtgtgtatgtagatttatacgtttcgtttatgaaacgttttaaatcctactgtaagttactttccaacggaattcatctgcttcttcatctctaacgaaagtataggcctttaaatgtccatcaatttcaagtctaagatatgtcaatgttgcgttgtatttagtaaatgccatcacatgtgaacttctttgtgttgattttgcaaatctataatccaatttcaatctttgattcccactatttaattttatcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="24650" stop="25717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24950" g_stop="25417" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E288437" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24950" e_stop="25417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATCAAAATAATACACTCTCTTAATTCAACCAAAACATAATATTTTTTTTCAAAAGTGGAATAAAGAAAAATAATTAACATTAAATAGGAGTTACCACTCATTTATTGGACTACTAGCTGCATGTGGACCCACTTATTGTACTGCACACTTATCCTTTATCTTATAGATTTACGTTCACAGCACGATAATATAATTCGTGAAAAAGAATAGTGTGTATGTAGATTTATACGTTTCGTTTATGAAACGTTTTAAATCCTACTGTAAGTTACTTTCCAACGGAATTCATCTGCTTCTTCATCTCTAACGAAAGTATAGGCCTTTAAATTTCCATCAATTTCAAGTCTAAGATATGTCAATGTTGTGTTGTATTTAGTAAATGCCATCACATGTGAACTTCTTTGTGTTGATTTTGCAAATCTATAATCCAATTTCAATCTTTGATTCCCACTATTTAATTTTATCGAT</genome_strand>
        <mrna_strand>TATATCAAAATAATACACTCTCTTAATTCAACCAAAACATAATATTTTTTTTCAAAAGTGGAATAAAGAAAAATAATTAACATTAAATAGGAGTTACCACTCATTTATTGGACTACTAGCTGCATGTGGACCCACTTATTGTACTGCACACTTATCCTTTATCTTATAGATTTACGTTCACAGCACGATAATATAATTCGTGAAAAAGAATAGTGTGTATGTAGATTTATACGTTTCGTTTATGAAACGTTTTAAATCCTACTGTAAGTTACTTTCCAACGGAATTCATCTGCTTCTTCATCTCTAACGAAAGTATAGGCCTTTAAATGTCCATCAATTTCAAGTCTAAGATATGTCAATGTTGCGTTGTATTTAGTAAATGCCATCACATGTGAACTTCTTTGTGTTGATTTTGCAAATCTATAATCCAATTTCAATCTTTGATTCCCACTATTTAATTTTATCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E211571" ref_strand="+" ref_description="SGN-E211571 [cLEC-67-K9]">
      <seq>ttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttatagcttggtggtgcagccgagattgtttgcagtctacaagggaaacaaggttgacgtggaattagcttggttcgattatggaaataacacattggaatcgataaaattaaatagtgggaatcaaagattgaaattggattatagatttgcaaaatcaacacaaagaagttcacatgtgatggcatttactaaatacaacacaacattgacatatcttagacttgaaattgatggaaatttaaaggcctatactttcgttagagatgaagaagcagatgaattccgttggaaagtaacttacagtaggatttaaaacgtttcataaacgaaacgtataaatctacatacacactattctttttcacgaattatattatcgtgctgtgaacgtaaatctataagataaaggataagtgtgcagtacaataagtgggtccacatgcagctagtagtccaataaatgagtggtaactcctatttaatgttaattatttttctttattccacttttgaaaaaaaatattatgttttggttngattaagagagtgtattattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="25920" stop="24655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25620" g_stop="24955" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E211571" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25620" e_stop="24955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTTAGACTTGAAATTGATGGAAATTTAAAGGCCTATACTTTCGTTAGAGATGAAGAAGCAGATGAATTCCGTTGGAAAGTAACTTACAGTAGGATTTAAAACGTTTCATAAACGAAACGTATAAATCTACATACACACTATTCTTTTTCACGAATTATATTATCGTGCTGTGAACGTAAATCTATAAGATAAAGGATAAGTGTGCAGTACAATAAGTGGGTCCACATGCAGCTAGTAGTCCAATAAATGAGTGGTAACTCCTATTTAATGTTAATTATTTTTCTTTATTCCACTTTTGAAAAAAAATATTATGTTTTGGTTGAATTAAGAGAGTGTATTATTTTG</genome_strand>
        <mrna_strand>TTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTTAGACTTGAAATTGATGGAAATTTAAAGGCCTATACTTTCGTTAGAGATGAAGAAGCAGATGAATTCCGTTGGAAAGTAACTTACAGTAGGATTTAAAACGTTTCATAAACGAAACGTATAAATCTACATACACACTATTCTTTTTCACGAATTATATTATCGTGCTGTGAACGTAAATCTATAAGATAAAGGATAAGTGTGCAGTACAATAAGTGGGTCCACATGCAGCTAGTAGTCCAATAAATGAGTGGTAACTCCTATTTAATGTTAATTATTTTTCTTTATTCCACTTTTGAAAAAAAATATTATGTTTTGGTTNGATTAAGAGAGTGTATTATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E746272" ref_strand="+" ref_description="SGN-E746272 [GI|47104782]">
      <seq>atcaaatcaaacaacaaattaaacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttatagcttggtggtgcagccgagattgtttgcagtctacaagggaaacaaggttgacgtggaattagcttggttcgattatggaaataacacattggaatcgataaaattaaatagtgggaatcaaagattgaaattggattatagatttgcaaaatcaacacaaagaagttcacatgtgatggcatttactaaatacaacacaacattgacatatcttagacttgaaattgatggaaatttaaaggcctatactttcgttagagatgaagaagcagatgaattccgttggaaagtaacttacagtaggatttaaaacgtttcataaacgaaacgtataaatctacatacacactattctttttcacgaattatattatcgtgctgtgaacgtaaatctataagataaaggataagtgtgcagtacaataagtgggtccacatgcagctagtagtccaataaatgagtggtaactcctatttaatgttaattatttttctttattccacttttgaaaaaaaatattatgttttggttgaattaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26418" stop="24668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26118" g_stop="24968" g_length="1151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1151" r_length="1151" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1152" polyA_stop="1164"/>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E746272" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1151</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26118" e_stop="24968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAATCAAACAACAAATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTTAGACTTGAAATTGATGGAAATTTAAAGGCCTATACTTTCGTTAGAGATGAAGAAGCAGATGAATTCCGTTGGAAAGTAACTTACAGTAGGATTTAAAACGTTTCATAAACGAAACGTATAAATCTACATACACACTATTCTTTTTCACGAATTATATTATCGTGCTGTGAACGTAAATCTATAAGATAAAGGATAAGTGTGCAGTACAATAAGTGGGTCCACATGCAGCTAGTAGTCCAATAAATGAGTGGTAACTCCTATTTAATGTTAATTATTTTTCTTTATTCCACTTTTGAAAAAAAATATTATGTTTTGGTTGAATTAAGAGA</genome_strand>
        <mrna_strand>ATCAAATCAAACAACAAATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTTAGACTTGAAATTGATGGAAATTTAAAGGCCTATACTTTCGTTAGAGATGAAGAAGCAGATGAATTCCGTTGGAAAGTAACTTACAGTAGGATTTAAAACGTTTCATAAACGAAACGTATAAATCTACATACACACTATTCTTTTTCACGAATTATATTATCGTGCTGTGAACGTAAATCTATAAGATAAAGGATAAGTGTGCAGTACAATAAGTGGGTCCACATGCAGCTAGTAGTCCAATAAATGAGTGGTAACTCCTATTTAATGTTAATTATTTTTCTTTATTCCACTTTTGAAAAAAAATATTATGTTTTGGTTGAATTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E540390" ref_strand="-" ref_description="SGN-E540390 [TUS-60-K6]">
      <seq>ggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttatagcttggtggtgcagccgagattgtttgcagtctacaagggaaacaaggttgacgtggaattagcttggttcgattatggaaataacacattggaatcgataaaattaaatagtgggaatcaaagattgaaattggattatagatttgcaaaatcaacccaaagaagttcacatgtgatggcattttctaaatacaacccaacattgacatattttagacttgaaattgatggaaatttaaaggcctatactttcgttagagatgaagaagcagatgaattccgttggaaagtaacttccagtaggatttaaaacgtttcataaacgaaacgtataaatctacataccccctattttttttcacgaattatattatcgtgctgtgaacgtaaatttataagataaaggataagtgtgcagtacaataagtgggtccccatgcagctagtagtccaataaatgagtggtaactcctatttaatgttaattatttttctttattccacttttgaaaaaaaatattatgttttggttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="25890" stop="24668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25590" g_stop="24977" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="616" polyA_stop="663"/>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E540390" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540390" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25590" e_stop="24977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTTAGACTTGAAATTGATGGAAATTTAAAGGCCTATACTTTCGTTAGAGATGAAGAAGCAGATGAATTCCGTTGGAAAGTAACTTACAGTAGGATTTAAAACGTTTCATAAACGAAACGTATAAATCTACATACACACTATTCTTTTTCACGAATTATATTATCGTGCTGTGAACGTAAATCTATAAGATAAAGGATAAGTGTGCAGTACAATAAGTGGGTCCACATGCAGCTAGTAGTCCAATAAATGAGTGGTAACTCCTATTTAATGTTAATTATTTTTCTTTATTCCACTTTTGAAAAAAAATATTATGTTTTGGTTGA</genome_strand>
        <mrna_strand>GGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACCCAAAGAAGTTCACATGTGATGGCATTTTCTAAATACAACCCAACATTGACATATTTTAGACTTGAAATTGATGGAAATTTAAAGGCCTATACTTTCGTTAGAGATGAAGAAGCAGATGAATTCCGTTGGAAAGTAACTTCCAGTAGGATTTAAAACGTTTCATAAACGAAACGTATAAATCTACATACCCCCTATTTTTTTTCACGAATTATATTATCGTGCTGTGAACGTAAATTTATAAGATAAAGGATAAGTGTGCAGTACAATAAGTGGGTCCCCATGCAGCTAGTAGTCCAATAAATGAGTGGTAACTCCTATTTAATGTTAATTATTTTTCTTTATTCCACTTTTGAAAAAAAATATTATGTTTTGGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E210758" ref_strand="+" ref_description="SGN-E210758 [cLEC-68-A4]">
      <seq>tgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttatagcttggtggtgcagccgagattgtttgcagtctacaagggaaacaaggttgacgtggaattagcttggttcgattatggaaataacacattggaatcgataaaattaaatagtgggaatcaaagattgaaattggattatagatttgcaaaatcaacacaaagaagttcacatgtgatggcatttactaaatacaacacaacattgacatatcttagacttgaaattgatggaaatttaaaggcctatactttcgttagagatgaagaagcagatgaattccgttggaaagtaacttacagtaggatttaaaacgtttcataaacgaaacgtataaatctacatacacactattctttttcacgaattatattatcgtgctgtgaacgtaaatctataagataaaggataagtgtgcagtacaataagtgggtccacatgcagctagtagtccaataaatgagtggtaactcctatttaatgttaattatttttctttattccacttttgaaaaaaatattatgttttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26038" stop="24680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25738" g_stop="24980" g_length="759"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="758" r_length="758" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E210758" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25738" e_stop="24980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTTAGACTTGAAATTGATGGAAATTTAAAGGCCTATACTTTCGTTAGAGATGAAGAAGCAGATGAATTCCGTTGGAAAGTAACTTACAGTAGGATTTAAAACGTTTCATAAACGAAACGTATAAATCTACATACACACTATTCTTTTTCACGAATTATATTATCGTGCTGTGAACGTAAATCTATAAGATAAAGGATAAGTGTGCAGTACAATAAGTGGGTCCACATGCAGCTAGTAGTCCAATAAATGAGTGGTAACTCCTATTTAATGTTAATTATTTTTCTTTATTCCACTTTTGAAAAAAAATATTATGTTTTGGT</genome_strand>
        <mrna_strand>TGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTTAGACTTGAAATTGATGGAAATTTAAAGGCCTATACTTTCGTTAGAGATGAAGAAGCAGATGAATTCCGTTGGAAAGTAACTTACAGTAGGATTTAAAACGTTTCATAAACGAAACGTATAAATCTACATACACACTATTCTTTTTCACGAATTATATTATCGTGCTGTGAACGTAAATCTATAAGATAAAGGATAAGTGTGCAGTACAATAAGTGGGTCCACATGCAGCTAGTAGTCCAATAAATGAGTGGTAACTCCTATTTAATGTTAATTATTTTTCTTTATTCCACTTTTG-AAAAAAATATTATGTTTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E211613" ref_strand="+" ref_description="SGN-E211613 [cLEC-67-M18]">
      <seq>ttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttatagcttggtggtgcagccgagattgtttgcagtctacaagggaaacaaggttgacgtggaattagcttggttcgattatggaaataacacattggaatcgataaaattaaatagtgggaatcaaagattgaaattggattatagatttgcaaaatcaacacaaagaagttcacatgtgatggcatttactaaatacaacacaacattgacatatcttagacttgaaattgatggaaatttaaaggcctatactttcgttagagatgaagaagcagatgaaattccgttggaagtaacttacagtaggattttaaacgtttcataaacgaaacgtataaatctacatacacactattctttttcacgaattatattatcgtgctgtgaacgtaaatctataagataaaggataagtgtgcagtacaataagtgggtccacatgcagctagtagtccaataaatgagtggtaactcctanttaatggtaattatttttctttatttcactttttgaaaaaaatattatgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="25920" stop="24683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25620" g_stop="24983" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E211613" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25620" e_stop="24983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTTAGACTTGAAATTGATGGAAATTTAAAGGCCTATACTTTCGTTAGAGATGAAGAAGCAGATG-AATTCCGTTGGAAAGTAACTTACAGTAGGATTTAAAACGTTTCATAAACGAAACGTATAAATCTACATACACACTATTCTTTTTCACGAATTATATTATCGTGCTGTGAACGTAAATCTATAAGATAAAGGATAAGTGTGCAGTACAATAAGTGGGTCCACATGCAGCTAGTAGTCCAATAAATGAGTGGTAACTCCTATTTAATGTTAATTATTTTTCTTTATTCCACTTTTGAAAAAAAATATTATGTTTT</genome_strand>
        <mrna_strand>TTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTTAGACTTGAAATTGATGGAAATTTAAAGGCCTATACTTTCGTTAGAGATGAAGAAGCAGATGAAATTCCGTTGG-AAGTAACTTACAGTAGGATTTTAAACGTTTCATAAACGAAACGTATAAATCTACATACACACTATTCTTTTTCACGAATTATATTATCGTGCTGTGAACGTAAATCTATAAGATAAAGGATAAGTGTGCAGTACAATAAGTGGGTCCACATGCAGCTAGTAGTCCAATAAATGAGTGGTAACTCCTANTTAATGGTAATTATTTTTCTTTATTTCACTTTTTGAAAAAAATATTATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E211769" ref_strand="+" ref_description="SGN-E211769 [cLEC-66-G18]">
      <seq>aggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttatagcttggtggtgcagccgagattgtttgcagtctacaagggaaacaaggttgacgtggaattagcttggttcgattatggaaataacacattggaatcgataaaattaaatagtgggaatcaaagattgaaattggattatagatttgcaaaatcaacacaaagaagttcacatgtgatggcatttactaaatacaacacaacattgacatatcttagacttgaaattgatggaaatttaaaggcctatactttcgttagagatgaagaagcagatgaattccgttggaaagtaacttacagtaggatttaaaacgtttcataaacgaaacgtataaatctacatacacactattctttttcacgaattatattatcgtgctgtgaacgtaaatctataagataaaggataagtgtgcagtacaataagtgggtccacatgcagctagtagtccaataaatgagtgggaactcctatttaatggtaattattttttcttattccacttttgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="25968" stop="24695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25669" g_stop="24995" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="675" r_length="675" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E211769" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25669" e_stop="24995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTTAGACTTGAAATTGATGGAAATTTAAAGGCCTATACTTTCGTTAGAGATGAAGAAGCAGATGAATTCCGTTGGAAAGTAACTTACAGTAGGATTTAAAACGTTTCATAAACGAAACGTATAAATCTACATACACACTATTCTTTTTCACGAATTATATTATCGTGCTGTGAACGTAAATCTATAAGATAAAGGATAAGTGTGCAGTACAATAAGTGGGTCCACATGCAGCTAGTAGTCCAATAAATGAGTGGTAACTCCTATTTAATGTTAATTATTTTTCTTTATTCCACTTTTGAAAAAAA</genome_strand>
        <mrna_strand>AGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTTAGACTTGAAATTGATGGAAATTTAAAGGCCTATACTTTCGTTAGAGATGAAGAAGCAGATGAATTCCGTTGGAAAGTAACTTACAGTAGGATTTAAAACGTTTCATAAACGAAACGTATAAATCTACATACACACTATTCTTTTTCACGAATTATATTATCGTGCTGTGAACGTAAATCTATAAGATAAAGGATAAGTGTGCAGTACAATAAGTGGGTCCACATGCAGCTAGTAGTCCAATAAATGAGTGGGAACTCCTATTTAATGGTAATTATTTTTTCTTATTCCACTTTTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E237284" ref_strand="-" ref_description="SGN-E237284 [cLEL-7-G14]">
      <seq>attagcttggttcgattatggaaataacacattggaatcgataaaattaaatagtgggaatcaaagattgaaattggattatagatttgcaaaatcaacacaaagaagttcacatgtgatggcatttactaaatacaacacaacattgacatatcttagacttgaaattgatggaaatttaaaggcctatactttcgttagagatgaagaagcagatgaattccgttggaaagtaacttacagtaggatttaaaacgtttcataaacgaaacgtataaatctacatacacactattctttttcacgaattatattatcgtgctgtgaacgtaaatctataagataaaggataagtgtgcagtacaataagtgggtccacatgcagctagtagtccaataaatgagtggtaactcctatttaatgttaattatttttctttattccaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="25753" stop="24708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25453" g_stop="25008" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="447" polyA_stop="474"/>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E237284" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237284" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25453" e_stop="25008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTTAGACTTGAAATTGATGGAAATTTAAAGGCCTATACTTTCGTTAGAGATGAAGAAGCAGATGAATTCCGTTGGAAAGTAACTTACAGTAGGATTTAAAACGTTTCATAAACGAAACGTATAAATCTACATACACACTATTCTTTTTCACGAATTATATTATCGTGCTGTGAACGTAAATCTATAAGATAAAGGATAAGTGTGCAGTACAATAAGTGGGTCCACATGCAGCTAGTAGTCCAATAAATGAGTGGTAACTCCTATTTAATGTTAATTATTTTTCTTTATTCCA</genome_strand>
        <mrna_strand>ATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTTAGACTTGAAATTGATGGAAATTTAAAGGCCTATACTTTCGTTAGAGATGAAGAAGCAGATGAATTCCGTTGGAAAGTAACTTACAGTAGGATTTAAAACGTTTCATAAACGAAACGTATAAATCTACATACACACTATTCTTTTTCACGAATTATATTATCGTGCTGTGAACGTAAATCTATAAGATAAAGGATAAGTGTGCAGTACAATAAGTGGGTCCACATGCAGCTAGTAGTCCAATAAATGAGTGGTAACTCCTATTTAATGTTAATTATTTTTCTTTATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E237377" ref_strand="-" ref_description="SGN-E237377 [cLEL-7-G2]">
      <seq>aatcgataaaattaaatagtgggaatcaaagattgaaattggattatagatttgcaaaatcaacacaaagaagttcacatgtgatggcatttactaaatacaacacaacattgacatatcttagacttgaaattgatggaaatttaaaggcctatactttcgttagagatgaagaagcagatgaattccgttggaaagtaacttacagtaggatttaaaacgtttcataaacgaaacgtataaatctacatacaccctattctttttcacgaattatattatcgtgctgtgaacgtaaatctataagataaaggataagtgtgcagtccaataagtgggtccacatgcagctagtagtccaataaatgagtggtaactcctatttaatgttaattatttttctttattcccaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="25718" stop="24709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25418" g_stop="25009" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="412" polyA_stop="439"/>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E237377" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237377" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25418" e_stop="25009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTTAGACTTGAAATTGATGGAAATTTAAAGGCCTATACTTTCGTTAGAGATGAAGAAGCAGATGAATTCCGTTGGAAAGTAACTTACAGTAGGATTTAAAACGTTTCATAAACGAAACGTATAAATCTACATACACACTATTCTTTTTCACGAATTATATTATCGTGCTGTGAACGTAAATCTATAAGATAAAGGATAAGTGTGCAGTACAATAAGTGGGTCCACATGCAGCTAGTAGTCCAATAAATGAGTGGTAACTCCTATTTAATGTTAATTATTTTTCTTTATTCC</genome_strand>
        <mrna_strand>AATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTTAGACTTGAAATTGATGGAAATTTAAAGGCCTATACTTTCGTTAGAGATGAAGAAGCAGATGAATTCCGTTGGAAAGTAACTTACAGTAGGATTTAAAACGTTTCATAAACGAAACGTATAAATCTACATACACCCTATTCTTTTTCACGAATTATATTATCGTGCTGTGAACGTAAATCTATAAGATAAAGGATAAGTGTGCAGTCCAATAAGTGGGTCCACATGCAGCTAGTAGTCCAATAAATGAGTGGTAACTCCTATTTAATGTTAATTATTTTTCTTTATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E241438" ref_strand="+" ref_description="SGN-E241438 [cLED-28-P16]">
      <seq>ttggtggtgcagccgaaattgtttgcattctacaagggaaacaaggttgacgtggaattatcttggttcgattatggaaataacacattgggatcgataaaattaaatagtgggaatcaaagattgaaattggattatagatttgcaaaatcaacacaaagaagttcacatgtgatggcatttactaaatacaacacaacattgacatatcttacacttgaaattgatggaaatttaaaggcctatactttcgttagagatgaagaagcagatgaattccgttggaaagtaacttacagtaagatttaaaacgtttcataaacgaaacgtataaatctacatacacactattctttttcacgaattatattatcgcgctgtgaacgtaaatctataagataaaggataagtgtgcagtacaataagtgggtccacatgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="25809" stop="24769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25509" g_stop="25069" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E241438" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25509" e_stop="25069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTTAGACTTGAAATTGATGGAAATTTAAAGGCCTATACTTTCGTTAGAGATGAAGAAGCAGATGAATTCCGTTGGAAAGTAACTTACAGTAGGATTTAAAACGTTTCATAAACGAAACGTATAAATCTACATACACACTATTCTTTTTCACGAATTATATTATCGTGCTGTGAACGTAAATCTATAAGATAAAGGATAAGTGTGCAGTACAATAAGTGGGTCCACATGCAG</genome_strand>
        <mrna_strand>TTGGTGGTGCAGCCGAAATTGTTTGCATTCTACAAGGGAAACAAGGTTGACGTGGAATTATCTTGGTTCGATTATGGAAATAACACATTGGGATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTTACACTTGAAATTGATGGAAATTTAAAGGCCTATACTTTCGTTAGAGATGAAGAAGCAGATGAATTCCGTTGGAAAGTAACTTACAGTAAGATTTAAAACGTTTCATAAACGAAACGTATAAATCTACATACACACTATTCTTTTTCACGAATTATATTATCGCGCTGTGAACGTAAATCTATAAGATAAAGGATAAGTGTGCAGTACAATAAGTGGGTCCACATGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E212292" ref_strand="+" ref_description="SGN-E212292 [cLEC-75-H14]">
      <seq>aaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttatagcttggtggtgcagccgagattgtttgcagtctacaagggaaacaaggttgacgtggaattagcttggttcgattatggaaataacacattggaatcgataaaattaaatagtgggaatcaaagattgaaattggattatagatttgcaaaatcaacacaaagaagttcacatgtgatggcatttactaaatacaacacaacattgacatatcttagacttgaaattgatggaaatttaaaggcctatactttcgttagagatgaagaagcagatgaattccgttggaaagtaacttacagtaggattttaaacgtttcataaacgaaacgtataaatctacatacacactattctttttcacgatttatattatcgtgctgtgaacgtaaatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26113" stop="24816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25813" g_stop="25116" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E212292" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25813" e_stop="25116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTTAGACTTGAAATTGATGGAAATTTAAAGGCCTATACTTTCGTTAGAGATGAAGAAGCAGATGAATTCCGTTGGAAAGTAACTTACAGTAGGATTTAAAACGTTTCATAAACGAAACGTATAAATCTACATACACACTATTCTTTTTCACGAATTATATTATCGTGCTGTGAACGTAAATCTA</genome_strand>
        <mrna_strand>AAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTTAGACTTGAAATTGATGGAAATTTAAAGGCCTATACTTTCGTTAGAGATGAAGAAGCAGATGAATTCCGTTGGAAAGTAACTTACAGTAGGATTTTAAACGTTTCATAAACGAAACGTATAAATCTACATACACACTATTCTTTTTCACGATTTATATTATCGTGCTGTGAACGTAAATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E211844" ref_strand="+" ref_description="SGN-E211844 [cLEC-66-F20]">
      <seq>gaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttatagcttggtggtgcagccgagattgtttgcagtctacaagggaaacaaggttgacgtggaattagcttggttcgattatggaaataacacattggaatcgataaaattaaatagtgggaatcaaagattgaaattggattatagatttgcaaaatcaacacaaagaagttcacatgtgatggcatttactaaatacaacacaacattgacatatcttagactttgaattgatgggaaatttaaggcctatactttcgttagagatgaagaagcagatgaattccgttggaaagtaacttacagtaggatttaaaacgtttcataaacgaaacgtataaatctacatacacactattcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26118" stop="24852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25818" g_stop="25152" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E211844" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25818" e_stop="25152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTTAGACTTGAAATTGATGGAAATTTAAAGGCCTATACTTTCGTTAGAGATGAAGAAGCAGATGAATTCCGTTGGAAAGTAACTTACAGTAGGATTTAAAACGTTTCATAAACGAAACGTATAAATCTACATACACACTATTCTTTTT</genome_strand>
        <mrna_strand>GAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTTAGACTTTGAATTGATGGGAAATTTAAGGCCTATACTTTCGTTAGAGATGAAGAAGCAGATGAATTCCGTTGGAAAGTAACTTACAGTAGGATTTAAAACGTTTCATAAACGAAACGTATAAATCTACATACACACTATTCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E379185" ref_strand="+" ref_description="SGN-E379185 [TUS-3-A21]">
      <seq>gtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttatagcttggtggtgcagccgagattgtttgcagtctacaagggaaacaaggttgacgtggaattagcttggttcgattatggaaataacacattggaatcgataaaattaaatagtgggaatcaaagattgaaattggattatagatttgcaaaatcaacacaaagaagttcacatgtgatggcatttactanatacaacacaacattgacatatcttagacttgaaattgatggaaatttaaggcctatactttcgttagagatgaagaagcagatgaattccgttggaaagtaacttacagtangattttaaacgtttcataaacgaaacgtataaatctacataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26204" stop="24865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25904" g_stop="25165" g_length="740"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E379185" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25904" e_stop="25165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTTAGACTTGAAATTGATGGAAATTTAAAGGCCTATACTTTCGTTAGAGATGAAGAAGCAGATGAATTCCGTTGGAAAGTAACTTACAGTAGGATTTAAAACGTTTCATAAACGAAACGTATAAATCTACATACA</genome_strand>
        <mrna_strand>GTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTANATACAACACAACATTGACATATCTTAGACTTGAAATTGATGGAAATTT-AAGGCCTATACTTTCGTTAGAGATGAAGAAGCAGATGAATTCCGTTGGAAAGTAACTTACAGTANGATTTTAAACGTTTCATAAACGAAACGTATAAATCTACATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E209495" ref_strand="+" ref_description="SGN-E209495 [cLEC-54-I2]">
      <seq>taaattcgtctggcagagtttcaactatcctactgacactttactagtgggccaaactctcagattgtgcggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttatagcttggtggtgcagccgagattgtttgcagtgtacaagggaaacaaggttgacgtggaattagctcgggttgattatggaaataacacattggaatcgataaaattaaatagtgggaatcaaagattgaaattggattatagatttgcaaaatcaacacatgagaactcacatgtgatggcatttactaactacgacacaacattgacatatcttagacttgaaattgatggagatttaaaggcctatactttcgttggagatgaagaagcagatgaattccgttggaaagtaacttacagttggatttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="25939" stop="18784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25639" g_stop="25200" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E209495" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25639" e_stop="25200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACA-AAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTTAGACTTGAAATTGATGGAAATTTAAAGGCCTATACTTTCGTTAGAGATGAAGAAGCAGATGAATTCCGTTGGAAAGTAACTTACAGTAGGATTTAAA</genome_strand>
        <mrna_strand>TAAATTCGTCTGGCAGAGTTTCAACTATCCTACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTGCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTGTACAAGGGAAACAAGGTTGACGTGGAATTAGCTCGGGTTGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACATGAGAA-CTCACATGTGATGGCATTTACTAACTACGACACAACATTGACATATCTTAGACTTGAAATTGATGGAGATTTAAAGGCCTATACTTTCGTTGGAGATGAAGAAGCAGATGAATTCCGTTGGAAAGTAACTTACAGTTGGATTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E203668" ref_strand="+" ref_description="SGN-E203668 [cLEC-15-G24]">
      <seq>tctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttatagcttggtggtgcagccgagattgtttgcagtctacaagggaaacaaggttgacgtggaattagcttggttcgattatggaaataacacattggaatcgattaaattaaatagtgggaatcaaagattgaaattggattatagatttgcaaaatcaacacaaagaagttcacatgtgatggcatttactaaatacaacacaacattgacatatcttagacttgaaattgatggaaatttaaaggcctatactttcgttagagatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26145" stop="24947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25845" g_stop="25247" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E203668" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25845" e_stop="25247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTTAGACTTGAAATTGATGGAAATTTAAAGGCCTATACTTTCGTTAGAGATGA</genome_strand>
        <mrna_strand>TCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATTAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTTAGACTTGAAATTGATGGAAATTTAAAGGCCTATACTTTCGTTAGAGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E201761" ref_strand="+" ref_description="SGN-E201761 [cLEC-11-K24]">
      <seq>taaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttatagcttggtggtgcagccgagattgtttgcagtctacaagggaaacaaggttgacgtggaattagcttggttcgattatggaaataacacattggaatcgataaaattaaatagtgggaatcaaagattgaaattggattatagatttgcaaaatcaacacaaagaagttcacatgtgatggcatttactaaatacaacacaacattgacatatcttagacttgaaattgatggaaatttaaaggcctatactttcgttagagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="25939" stop="24948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25639" g_stop="25248" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E201761" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25639" e_stop="25248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTTAGACTTGAAATTGATGGAAATTTAAAGGCCTATACTTTCGTTAGAGATG</genome_strand>
        <mrna_strand>TAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTTAGACTTGAAATTGATGGAAATTTAAAGGCCTATACTTTCGTTAGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E209301" ref_strand="+" ref_description="SGN-E209301 [cLEC-53-N11]">
      <seq>aacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttatagcttggtggtgcagccgagattgtttgcagtctacaagggaaacaaggttgacgtggaattagcttggttcgattatggaaataacacattggaatcgataaaattaaatagtgggaatcaaagattgaaattggattatagatttgcaaaatcaacacaaagaagttcacatgtgatggcatttactaaatacaacacaacattgacatatcttagacttgaaattgatggaaatttaaaggcctatactttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26013" stop="24958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25713" g_stop="25258" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E209301" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25713" e_stop="25258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTTAGACTTGAAATTGATGGAAATTTAAAGGCCTATACTTTC</genome_strand>
        <mrna_strand>AACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTTAGACTTGAAATTGATGGAAATTTAAAGGCCTATACTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E604929" ref_strand="+" ref_description="SGN-E604929 [56946]">
      <seq>tttcttgcattgctcaagttccagctgaaaacacctttaaattcgtcaatgaaggcgaattaggagattatattgtagaatacagagcaaattatcgcgttattagtattttcaataacccatttcagttctgtttctacaacacaactcctaatgcatggacattagcattgcgaatgggcactgtccgttctgaatcactcatgcgttgggtgtgggaagcaaataggggaaaccctgttaaagaaaacgcgacattcacatttggaactaacggaaatcttgtattggcggatgctgacggtcgaatcgcttggcagaccaacacggccaataagggagttaccgggttcaagttgttacctaacggtaacatggtgctacatgactccaagggtaaatttgtctggcagagtttcaactatcccactgacacattactagtgggccaaactctccgattgtccggcccgaataagcttgtgagccgggcctcgatgaaaaagaatgcgaacgggccttatagcttggtggtccagccgagattgttcgctgtctacaagggaaacaaggtagacgtggaattagcttggttcgattatgggaataacacgttggaatcgataaaattgaatagtgggaatcaaagattgaaattggattatagatttgcaaaatcaacacagagaagttcacatgtgatggcattactaaatacaacacaacattgacatatcttagacttgacattgatggaaatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26336" stop="24973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26036" g_stop="25273" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E604929" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26036" e_stop="25273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTTAGACTTGAAATTGATGGAAATTTA</genome_strand>
        <mrna_strand>TTTCTTGCATTGCTCAAGTTCCAGCTGAAAACACCTTTAAATTCGTCAATGAAGGCGAATTAGGAGATTATATTGTAGAATACAGAGCAAATTATCGCGTTATTAGTATTTTCAATAACCCATTTCAGTTCTGTTTCTACAACACAACTCCTAATGCATGGACATTAGCATTGCGAATGGGCACTGTCCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAATAGGGGAAACCCTGTTAAAGAAAACGCGACATTCACATTTGGAACTAACGGAAATCTTGTATTGGCGGATGCTGACGGTCGAATCGCTTGGCAGACCAACACGGCCAATAAGGGAGTTACCGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACTCCAAGGGTAAATTTGTCTGGCAGAGTTTCAACTATCCCACTGACACATTACTAGTGGGCCAAACTCTCCGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGATGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTCCAGCCGAGATTGTTCGCTGTCTACAAGGGAAACAAGGTAGACGTGGAATTAGCTTGGTTCGATTATGGGAATAACACGTTGGAATCGATAAAATTGAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAGAGAAGTTCACATGTGATGGCA-TTACTAAATACAACACAACATTGACATATCTTAGACTTGACATTGATGGAAATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E213661" ref_strand="+" ref_description="SGN-E213661 [cLEC-76-O20]">
      <seq>cttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttatagcttggtggtgcagccgagattgtttgcagtctacaagggaaacaaggttgacgtggaattagcttggttcgattatggaaataacacattggaatcgataaaattaaatagtgggaatcaaagattgaaattggattatagatttgcaaaatcaacacaaagaaagtcacatgtgatggcatttactaaatacaacacaacattgacatatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26370" stop="24997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26070" g_stop="25297" g_length="774"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="774" r_length="774" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E213661" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26070" e_stop="25297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTT</genome_strand>
        <mrna_strand>CTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAAGTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E272594" ref_strand="+" ref_description="SGN-E272594 [cLEM-21-F15]">
      <seq>tcaaatcaaacaacaaattaaacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttatagcttggtggtgcagccgagattgtttgcagtctacaagggaaacaaggttgacgtggaattagcttggttcgattatggaaataacacattggaatcgataaaattaaatagtgggaatcaaagattgaaattggattatagatttgcaaaatcacacaaagaaagtcacatgtgatggcatttactaaatacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26417" stop="25016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26117" g_stop="25316" g_length="802"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="801" r_length="801" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E272594" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26117" e_stop="25316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCAAACAACAAATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAA</genome_strand>
        <mrna_strand>TCAAATCAAACAACAAATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATC-ACACAAAGAAAGTCACATGTGATGGCATTTACTAAATACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E410569" ref_strand="+" ref_description="SGN-E410569 [PPI-17-M12]">
      <seq>aacaaactaaacatgtctccttcatggcctactgcacttcttgcctctctctttcttttctcccaaatattttcttgcattgctcaagttccagctgaaaacacctttaaattcgtcaatgaaggcgagttaggagattatgttgtagaatacagagcagattatcgcgttattagtattttcaataacccatttcagctctgtttctacaacacaactcctaatgcatggacattagcattgcgaatgggcactgtccgttctgaatcactgatgcgttgggtgtgggaagcaaataggggaaatctcgttaaagaaaacgcgacattcacgtttggaactaacggaaatcttgtattggcggatgctgacggtcgaatcgcttggcagaccaacacggccaataagggtgtcaccgggttcaagttgttacctaacggtaacatggtgctacatgactccaagggtaaattcgtctggcaaagtttcaactatcccactgacacattactagtgggccaaactctccgattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcaaacgggccttatagcttggtggtgcagccgagattgttcgctgtctacaaggaaacaaggtagacgtggaattagcttggttcgattatgggaataacacgttggaatcgataaaattgaatagtgggaatcaaagattgaaattggattatagatttgcaaaatcaacacagagaagttcacatgtgatggcatttactaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26406" stop="25022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26106" g_stop="25322" g_length="785"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="784" r_length="784" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E410569" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E410569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26106" e_stop="25322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAA</genome_strand>
        <mrna_strand>AACAAACTAAACATGTCTCCTTCATGGCCTACTGCACTTCTTGCCTCTCTCTTTCTTTTCTCCCAAATATTTTCTTGCATTGCTCAAGTTCCAGCTGAAAACACCTTTAAATTCGTCAATGAAGGCGAGTTAGGAGATTATGTTGTAGAATACAGAGCAGATTATCGCGTTATTAGTATTTTCAATAACCCATTTCAGCTCTGTTTCTACAACACAACTCCTAATGCATGGACATTAGCATTGCGAATGGGCACTGTCCGTTCTGAATCACTGATGCGTTGGGTGTGGGAAGCAAATAGGGGAAATCTCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTTGTATTGGCGGATGCTGACGGTCGAATCGCTTGGCAGACCAACACGGCCAATAAGGGTGTCACCGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACTCCAAGGGTAAATTCGTCTGGCAAAGTTTCAACTATCCCACTGACACATTACTAGTGGGCCAAACTCTCCGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCAAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTCGCTGTCTACAA-GGAAACAAGGTAGACGTGGAATTAGCTTGGTTCGATTATGGGAATAACACGTTGGAATCGATAAAATTGAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAGAGAAGTTCACATGTGATGGCATTTACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E211281" ref_strand="+" ref_description="SGN-E211281 [cLEC-70-I18]">
      <seq>ttaaacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttatagcttggtggtgcagccgagattgtttgcagtctacaagggaaacaaggttgacgtggaattagcttggttcgattatggaaatacacattggaatcgataaaattaaatagtgggaatcaaagattgaaatttggatatagattttgcaaatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26400" stop="25056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26100" g_stop="25356" g_length="745"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="744" r_length="744" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E211281" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26100" e_stop="25356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAA</genome_strand>
        <mrna_strand>TTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAAT-ACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTTGGATATAGATTTTGCAAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E211550" ref_strand="+" ref_description="SGN-E211550 [cLEC-67-E3]">
      <seq>aattaaacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttatagcttggtggtgcagccgagattgtttgcagtctacaagggaaacaaggttgacgtggaattagcttggttcgattatggaaataacacattggaatcgataaaattaaatagtggggatcaaagattgaaaattggattatagatttgcaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26402" stop="25059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26102" g_stop="25359" g_length="744"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="745" r_length="745" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E211550" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26102" e_stop="25359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTG-AAATTGGATTATAGATTTGCAAAAT</genome_strand>
        <mrna_strand>AATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGGATCAAAGATTGAAAATTGGATTATAGATTTGCAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E211314" ref_strand="+" ref_description="SGN-E211314 [cLEC-70-J19]">
      <seq>ttaaacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttatagcttggtggtgcagccgagattgtttgcagtctacaagggaaacaaggttgacgtggaattagcttggttcgattatggaaataacacattggaatcgataaaattaatagtgggaatcaaagattgaaattggatatagatttgcaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26400" stop="25059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26100" g_stop="25359" g_length="742"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="740" r_length="740" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E211314" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26100" e_stop="25359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAAT</genome_strand>
        <mrna_strand>TTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATT-AATAGTGGGAATCAAAGATTGAAATTGGA-TATAGATTTGCAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E212646" ref_strand="+" ref_description="SGN-E212646 [cLEC-73-G21]">
      <seq>ttaaacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttatagcttggtggtgcagccgagattgtttgcagtctacaagggaaacaaggttgacgtggaattagcttggttcgattatggaaataacacattggaatcgataaaattaaatagtgggaatcaaagattgaaattggattatagatttgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26400" stop="25062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26100" g_stop="25362" g_length="739"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E212646" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26100" e_stop="25362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAA</genome_strand>
        <mrna_strand>TTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E212299" ref_strand="+" ref_description="SGN-E212299 [cLEC-75-L10]">
      <seq>ttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttatagcttggtggtgcagccgagattgtttgcagtctacaagggaaacaaggttgacgtggaattagcttggttcgattatggaaataacacattggaatcgataaaattaatagtgggaaatcaagattgaaattggattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26269" stop="25072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25969" g_stop="25372" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E212299" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25969" e_stop="25372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTAT</genome_strand>
        <mrna_strand>TTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATT-AATAGTGGGAAATCAAGATTGAAATTGGATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E211570" ref_strand="+" ref_description="SGN-E211570 [cLEC-67-K7]">
      <seq>acaaattaaacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttatagcttggtggtgcagccgagattgtttgcagtctacaaggaaacaaggttgacgtggaattagcttggttcgattatggaaataacacattggaatcgataaaattaaatagtgggaatcaaagattgaaattggatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26405" stop="25073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26105" g_stop="25373" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="732" r_length="732" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E211570" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26105" e_stop="25373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTA</genome_strand>
        <mrna_strand>ACAAATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAA-GGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E408255" ref_strand="+" ref_description="SGN-E408255 [PPI-10-H15]">
      <seq>taaacatgtctccttcatggcctactgcacttcttgcctctctctttcttttctcccaaatattttcttgcattgctcaagttccagctgaaaacacctttaaattcgtcaatgaaggcgagttaggagaattatgttgtagaatacagagcagattatcgcgttattagtattttcaataacccatttcagctctgtttctacaacacaactcctaatgcatggacattagcattgcgaatgggcactgtccgttctgaatcactgatgcgttgggtgtgggaagcaaataggggaaatctcgttaaagaaaacgcgacattcacgtttggaactaacggaaatcttgtattggcggatgctgacggtcgaatcgcttggcagaccaacacggccaataagggtgtcaccgggttcaagttgttacctaacggtaacatggtgctacatgactccaagggtaaattcgtctggcaaagtttcaactatcccactgacacattactagtgggccaaactctccgattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcaaacgggccttantagcttggtggtgcagccgagattgttcgctgtctacaagggaaacaaggtagacgtggaattagcttggtttcgattatggggaataacacgttggaaatcgataaaattgaatagntgggaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26399" stop="25091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26099" g_stop="25391" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E408255" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26099" e_stop="25391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGA-CCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTA-TAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGG-TTCGATTAT-GGAAATAACACATTGG-AATCGATAAAATTAAATAG-TGGGAATCA</genome_strand>
        <mrna_strand>TAAACATGTCTCCTTCATGGCCTACTGCACTTCTTGCCTCTCTCTTTCTTTTCTCCCAAATATTTTCTTGCATTGCTCAAGTTCCAGCTGAAAACACCTTTAAATTCGTCAATGAAGGCGAGTTAGGAGAATTATGTTGTAGAATACAGAGCAGATTATCGCGTTATTAGTATTTTCAATAACCCATTTCAGCTCTGTTTCTACAACACAACTCCTAATGCATGGACATTAGCATTGCGAATGGGCACTGTCCGTTCTGAATCACTGATGCGTTGGGTGTGGGAAGCAAATAGGGGAAATCTCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTTGTATTGGCGGATGCTGACGGTCGAATCGCTTGGCAGACCAACACGGCCAATAAGGGTGTCACCGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACTCCAAGGGTAAATTCGTCTGGCAAAGTTTCAACTATCCCACTGACACATTACTAGTGGGCCAAACTCTCCGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCAAACGGGCCTTANTAGCTTGGTGGTGCAGCCGAGATTGTTCGCTGTCTACAAGGGAAACAAGGTAGACGTGGAATTAGCTTGGTTTCGATTATGGGGAATAACACGTTGGAAATCGATAAAATTGAATAGNTGGGAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E374971" ref_strand="+" ref_description="SGN-E374971 [TUS-15-O15]">
      <seq>ttaaacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttatagcttggtggtgcagccgagattgtttgcagtctacaagggaaacaaggttgacgtggaattagcttggttcgattattgaaataacacattggaatcgataaaattaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26400" stop="25103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26100" g_stop="25403" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E374971" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26100" e_stop="25403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAA</genome_strand>
        <mrna_strand>TTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATTGAAATAACACATTGGAATCGATAAAATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E241905" ref_strand="+" ref_description="SGN-E241905 [cLED-27-D20]">
      <seq>ttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttatagcttggtggtgcagccgagattgtttgcagtctacaagggaaacaaggttgacgtggaattagcttggttcgattatggaaataacacattggaatcgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26312" stop="25111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26012" g_stop="25411" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E241905" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26012" e_stop="25411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATA</genome_strand>
        <mrna_strand>TTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E213199" ref_strand="+" ref_description="SGN-E213199 [cLEC-72-J17]">
      <seq>aacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttatagcttggtggtgcagccgagattgtttgcagtctacaagggaaacaaggttgacgtggaattagcttnggtcgattatggaaatacacattggaatcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26397" stop="25112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26097" g_stop="25412" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="685" r_length="685" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E213199" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26097" e_stop="25412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGAT</genome_strand>
        <mrna_strand>AACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTNGGTCGATTATGGAAAT-ACACATTGGAATCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E211718" ref_strand="+" ref_description="SGN-E211718 [cLEC-66-E23]">
      <seq>ttaaacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttatagcttggtggtgcagccgagattgtttgcagtctacaagggaaacaaggttgacgtggaattagcttggttcgattatggaaataacacattggaatcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26400" stop="25113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26100" g_stop="25413" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E211718" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26100" e_stop="25413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGA</genome_strand>
        <mrna_strand>TTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E207748" ref_strand="+" ref_description="SGN-E207748 [cLEC-32-E8]">
      <seq>gtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttatagcttggtggtgcagccgagattgtttgcagtctacaagggaaacaaggttgacgtggaattagcttggttcgattatggaaataacacattggaatcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26204" stop="25113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25904" g_stop="25413" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E207748" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25904" e_stop="25413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGA</genome_strand>
        <mrna_strand>GTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E208028" ref_strand="+" ref_description="SGN-E208028 [cLEC-34-A12]">
      <seq>tacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttatagcttggtggtgcagccgagattgtttgcagtctacaaaggaaacaaggttgacgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26389" stop="25154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26089" g_stop="25454" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="636" r_length="636" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E208028" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26089" e_stop="25454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGA</genome_strand>
        <mrna_strand>TACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAAGGAAACAAGGTTGACGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E209847" ref_strand="+" ref_description="SGN-E209847 [cLEC-52-M3]">
      <seq>acaaattaaacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttatagcttggtggtgcagccgagattgtttgcagtctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26405" stop="25176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26105" g_stop="25476" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E209847" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26105" e_stop="25476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACA</genome_strand>
        <mrna_strand>ACAAATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E212296" ref_strand="+" ref_description="SGN-E212296 [cLEC-75-J14]">
      <seq>acaaattaaacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaagaatgcgaacgggccttatagcttggtggtgcagccgagattgtttgcagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26405" stop="25179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26105" g_stop="25479" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E212296" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26105" e_stop="25479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCT</genome_strand>
        <mrna_strand>ACAAATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTG-AAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E210457" ref_strand="+" ref_description="SGN-E210457 [cLEC-35-E2]">
      <seq>ctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttatagcttggtggtgcagccgagattgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26378" stop="25186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26078" g_stop="25486" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E210457" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26078" e_stop="25486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTT</genome_strand>
        <mrna_strand>CTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E407846" ref_strand="+" ref_description="SGN-E407846 [PPI-8-B20]">
      <seq>caacaaactaaacatgtcttcttcatggcctactacacttcttgcctctctctttcttttctcccaaacattttcttgcattgctcaagttccagcagaaaacacctttaaattcgtcaatgatggcgaattaggagattatgttgtagaatacagagcaaattatcgcgttattagtattttcaataacccatttcagctctgtttctacaacacaactcctaatgcatggacattagcattgcgaatgggcactgtccgttctgaatcactgatgcgttgggtgtgggaagcaaataggggaaatcccgttaaagaaaacgcgacattcacgtttggaactaacggaaatcttgtattggcggatgctgacggtcgaatcgcttggcagaccaacacggccaataagggtgtcaccgggttcaagttgttacctaacggtaacatggtgctacatgactccaagggtaaattcgtctggcaaagtttcaactatcccactgacacattactagtgggccaaactctccgattgtccggcccgaataagcttgtgagccggggcctcgtgaaaaagaatgcaaacgggccttatagcttggtggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26407" stop="25200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26107" g_stop="25500" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E407846" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26107" e_stop="25500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAAATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGC</genome_strand>
        <mrna_strand>CAACAAACTAAACATGTCTTCTTCATGGCCTACTACACTTCTTGCCTCTCTCTTTCTTTTCTCCCAAACATTTTCTTGCATTGCTCAAGTTCCAGCAGAAAACACCTTTAAATTCGTCAATGATGGCGAATTAGGAGATTATGTTGTAGAATACAGAGCAAATTATCGCGTTATTAGTATTTTCAATAACCCATTTCAGCTCTGTTTCTACAACACAACTCCTAATGCATGGACATTAGCATTGCGAATGGGCACTGTCCGTTCTGAATCACTGATGCGTTGGGTGTGGGAAGCAAATAGGGGAAATCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTTGTATTGGCGGATGCTGACGGTCGAATCGCTTGGCAGACCAACACGGCCAATAAGGGTGTCACCGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACTCCAAGGGTAAATTCGTCTGGCAAAGTTTCAACTATCCCACTGACACATTACTAGTGGGCCAAACTCTCCGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGGCCTCGTGAAAAAGAATGCAAACGGGCCTTATAGCTTGGTGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E210365" ref_strand="+" ref_description="SGN-E210365 [cLEC-35-P19]">
      <seq>ttaaacatgactacttcatggcctactacacttattgcttctctatttcttttctcccaaatattttcttgcattgccctaattccacttgaaaacacctttgaattcgtcaacgaaggcgaattaagaccttatatcgtcgaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctaaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttcaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttatagcttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26400" stop="25205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26100" g_stop="25505" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E210365" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26100" e_stop="25505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGT</genome_strand>
        <mrna_strand>TTAAACATGACTACTTCATGGCCTACTACACTTATTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAATTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAAGACCTTATATCGTCGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTAAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTCAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E214928" ref_strand="+" ref_description="SGN-E214928 [cLEC-78-H9]">
      <seq>ttaaacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagnttcaactatcccactgacactttactagtgggccaaactctcagattgtccgggccgaataagcttgtgagccgggcctcggtgaaaagaatgcgaacgggccttatagcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26400" stop="25207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26100" g_stop="25507" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E214928" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26100" e_stop="25507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTG</genome_strand>
        <mrna_strand>TTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGNTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGGCCGAATAAGCTTGTGAGCCGGGCCTCGGTG-AAAAGAATGCGAACGGGCCTTATAGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E211424" ref_strand="+" ref_description="SGN-E211424 [cLEC-67-G20]">
      <seq>ttaaacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttatagcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26400" stop="25207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26100" g_stop="25507" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E211424" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26100" e_stop="25507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTG</genome_strand>
        <mrna_strand>TTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E213092" ref_strand="+" ref_description="SGN-E213092 [cLEC-72-J16]">
      <seq>acatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttatagcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26396" stop="25207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26096" g_stop="25507" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E213092" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26096" e_stop="25507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTG</genome_strand>
        <mrna_strand>ACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E206168" ref_strand="+" ref_description="SGN-E206168 [cLEC-29-C7]">
      <seq>acaaattaaacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26405" stop="25213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26105" g_stop="25513" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E206168" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26105" e_stop="25513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTAT</genome_strand>
        <mrna_strand>ACAAATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E282611" ref_strand="+" ref_description="SGN-E282611 [cLER-15-I7]">
      <seq>cgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaatggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagccgggcctcggtgaaaaagaatgcgaacgggccttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26241" stop="25213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25941" g_stop="25513" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E282611" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25941" e_stop="25513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTAT</genome_strand>
        <mrna_strand>CGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAATGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E206811" ref_strand="+" ref_description="SGN-E206811 [cLEC-33-E1]">
      <seq>tgactactggatggcctactacacttcttgcttgtctatatcttttctcccagatattgtcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgcgttcttagtgttatcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgatctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaatatgggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatgccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26393" stop="25248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26093" g_stop="25548" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E206811" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26093" e_stop="25548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCC</genome_strand>
        <mrna_strand>TGACTACTGGATGGCCTACTACACTTCTTGCTTGTCTATATCTTTTCTCCCAGATATTGTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGCGTTCTTAGTGTTATCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGATCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATATGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATGCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E203914" ref_strand="+" ref_description="SGN-E203914 [cLEC-17-P5]">
      <seq>acatgactacttcatggcctactacacttcttgcttctcgatttcttttctcgggaatattttcttgcattgccctaattccacttgaaaacacctttgaattcgtcaacgaaggcgaattatgaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcagattgtccggcccgaataagcttgtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26396" stop="25250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26096" g_stop="25550" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E203914" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26096" e_stop="25550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAG</genome_strand>
        <mrna_strand>ACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCGATTTCTTTTCTCGGGAATATTTTCTTGCATTGCCCTAATTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTATGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E564725" ref_strand="+" ref_description="SGN-E564725 [2974]">
      <seq>gtctccttcatggcctactacacttcttggcctctctatttcttttctcccaaatattttcttgacattgctcaagttccacttgaaaacaccttcaaattcgtcaatgaaggcgaattaggaccttatgttgtagaatacagagcagactatcgcgttattggtatttttaataacccatttcagctctgtttctacaacacaactcctaatgcatggacattagcgttgcgaatgggcactgtccgttctgaatcactcatgcgttgggtgtgggaagcaaataggggaaaccccgttaaagaaaacgcgacatttacgtttggaactaacggaaatctcgtattggcggatgctgacggtcgaattgcttggcagaccaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgactccaagggtaaattcgtctaggcagagtttcaactatcccactgacacattacctatgggccaaactctccgataagtccggcccggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26392" stop="25275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26092" g_stop="25565" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E564725" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E564725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26092" e_stop="25565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTACTTCATGGCCTACTACACTTCTT-GCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTG-CATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCT-GGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGAT-TGTCCGGCCC</genome_strand>
        <mrna_strand>GTCTCCTTCATGGCCTACTACACTTCTTGGCCTCTCTATTTCTTTTCTCCCAAATATTTTCTTGACATTGCTCAAGTTCCACTTGAAAACACCTTCAAATTCGTCAATGAAGGCGAATTAGGACCTTATGTTGTAGAATACAGAGCAGACTATCGCGTTATTGGTATTTTTAATAACCCATTTCAGCTCTGTTTCTACAACACAACTCCTAATGCATGGACATTAGCGTTGCGAATGGGCACTGTCCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAATAGGGGAAACCCCGTTAAAGAAAACGCGACATTTACGTTTGGAACTAACGGAAATCTCGTATTGGCGGATGCTGACGGTCGAATTGCTTGGCAGACCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACTCCAAGGGTAAATTCGTCTAGGCAGAGTTTCAACTATCCCACTGACACATTACCTATGGGCCAAACTCTCCGATAAGTCCGGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E241997" ref_strand="+" ref_description="SGN-E241997 [cLED-27-G20]">
      <seq>ttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactntactagtgggccaaactctcagattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26312" stop="25273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26012" g_stop="25573" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E241997" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26012" e_stop="25573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTG</genome_strand>
        <mrna_strand>TTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTNTACTAGTGGGCCAAACTCTCAGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E206885" ref_strand="+" ref_description="SGN-E206885 [cLEC-33-F20]">
      <seq>ttaaacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26400" stop="25277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26100" g_stop="25577" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E206885" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26100" e_stop="25577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAG</genome_strand>
        <mrna_strand>TTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E415726" ref_strand="+" ref_description="SGN-E415726 [STM-21-H8]">
      <seq>tgtcttcttcctggcctactacacttcttgcctctctctttcttttctcccaaatattttcttgcattgctcaagttccagcagaaaacacctttaaattcgtcaatgatggcgaattaggagattatgttgtagaatacagagcaaattatcgcgttattagtattttcaataacccatttcagctctgtttctacaacacaactcctaatgcatggacattagcattgcgaatgggcactgtccgttctgaatcactcatgcgttgggtgtgggaagcaaataggggaaaccccgttaaagaaaatgcgacattcacgtttggaactaacggaaatctcgtattggcggatgctgacggtcgaatcgcttggcagaccaacacggccaataagggggtcaccgggttcaaattgttacctaacggtaacatggtgctacatgactccaagggtaaattcgtctggcagagtttcaactatcccactgacacattactagtgggccaaactctccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26393" stop="25277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26093" g_stop="25577" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E415726" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26093" e_stop="25577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAG</genome_strand>
        <mrna_strand>TGTCTTCTTCCTGGCCTACTACACTTCTTGCCTCTCTCTTTCTTTTCTCCCAAATATTTTCTTGCATTGCTCAAGTTCCAGCAGAAAACACCTTTAAATTCGTCAATGATGGCGAATTAGGAGATTATGTTGTAGAATACAGAGCAAATTATCGCGTTATTAGTATTTTCAATAACCCATTTCAGCTCTGTTTCTACAACACAACTCCTAATGCATGGACATTAGCATTGCGAATGGGCACTGTCCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAATAGGGGAAACCCCGTTAAAGAAAATGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCGGATGCTGACGGTCGAATCGCTTGGCAGACCAACACGGCCAATAAGGGGGTCACCGGGTTCAAATTGTTACCTAACGGTAACATGGTGCTACATGACTCCAAGGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACATTACTAGTGGGCCAAACTCTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E204423" ref_strand="+" ref_description="SGN-E204423 [cLEC-13-F12]">
      <seq>acacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26373" stop="25277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26073" g_stop="25577" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E204423" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26073" e_stop="25577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAG</genome_strand>
        <mrna_strand>ACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E211924" ref_strand="+" ref_description="SGN-E211924 [cLEC-66-C22]">
      <seq>tcaaatcaaacaacaaattaaacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26417" stop="25279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26117" g_stop="25579" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E211924" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26117" e_stop="25579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCAAACAACAAATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTC</genome_strand>
        <mrna_strand>TCAAATCAAACAACAAATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E202597" ref_strand="+" ref_description="SGN-E202597 [cLEC-19-L11]">
      <seq>acaaattaaacatgactacttcatggcctactacacttcttgcttcgctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26405" stop="25279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26105" g_stop="25579" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E202597" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26105" e_stop="25579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTC</genome_strand>
        <mrna_strand>ACAAATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCGCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E204219" ref_strand="+" ref_description="SGN-E204219 [cLEC-13-D15]">
      <seq>aattaaacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26402" stop="25279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26102" g_stop="25579" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E204219" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26102" e_stop="25579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTC</genome_strand>
        <mrna_strand>AATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E395913" ref_strand="+" ref_description="SGN-E395913 [TUS-18-F17]">
      <seq>tacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacgtgggggggggtgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26374" stop="25280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26074" g_stop="25580" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E395913" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26074" e_stop="25580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCT</genome_strand>
        <mrna_strand>TACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACGTGGGGGGGGGTGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E205489" ref_strand="+" ref_description="SGN-E205489 [cLEC-28-D7]">
      <seq>ctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgggccaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26378" stop="25281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26078" g_stop="25581" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E205489" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26078" e_stop="25581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTC</genome_strand>
        <mrna_strand>CTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E208963" ref_strand="+" ref_description="SGN-E208963 [cLEC-38-C6]">
      <seq>ttaaacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26400" stop="25290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26100" g_stop="25590" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E208963" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26100" e_stop="25590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGG</genome_strand>
        <mrna_strand>TTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E212002" ref_strand="+" ref_description="SGN-E212002 [cLEC-66-N1]">
      <seq>ttaaacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26400" stop="25290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26100" g_stop="25590" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E212002" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26100" e_stop="25590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGG</genome_strand>
        <mrna_strand>TTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E437573" ref_strand="+" ref_description="SGN-E437573 [cSTA-4-A2]">
      <seq>tgtcttcttcctggcctactacacttcttgcctctctctttcttttctcccaaatattttcttgcattgctcaagttccagcagaaaacacctttaaattcgtcaatgatggcgaattaggagattatgttgtagaatacagagcaaattatcgcgttattagtattttcaataacccatttcagctctgtttctacaacacaactcctaatgcatggacattagcattgcgaatgggcactgtccgttctgaatcactcatgcgttgggtgtgggaagcaaataggggaaaccccgttaaagaaaatgcgacattcacgtttggaactaacggaaatctcgtattggcggatgctgacggtcgaatcgcttggcagaccaacacggccaataagggggtcaccgggttcaaattgttacctaacggtaacatggtgctacatgactccaagggtaaattcgtctggcagagtttcaactatcccactgacacattactagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26393" stop="25291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26093" g_stop="25591" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E437573" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26093" e_stop="25591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTG</genome_strand>
        <mrna_strand>TGTCTTCTTCCTGGCCTACTACACTTCTTGCCTCTCTCTTTCTTTTCTCCCAAATATTTTCTTGCATTGCTCAAGTTCCAGCAGAAAACACCTTTAAATTCGTCAATGATGGCGAATTAGGAGATTATGTTGTAGAATACAGAGCAAATTATCGCGTTATTAGTATTTTCAATAACCCATTTCAGCTCTGTTTCTACAACACAACTCCTAATGCATGGACATTAGCATTGCGAATGGGCACTGTCCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAATAGGGGAAACCCCGTTAAAGAAAATGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCGGATGCTGACGGTCGAATCGCTTGGCAGACCAACACGGCCAATAAGGGGGTCACCGGGTTCAAATTGTTACCTAACGGTAACATGGTGCTACATGACTCCAAGGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACATTACTAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E205838" ref_strand="+" ref_description="SGN-E205838 [cLEC-20-K14]">
      <seq>aaacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26398" stop="25292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26098" g_stop="25592" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E205838" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26098" e_stop="25592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGT</genome_strand>
        <mrna_strand>AAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E202652" ref_strand="+" ref_description="SGN-E202652 [cLEC-19-F3]">
      <seq>atgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccggtccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggtcaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26394" stop="25292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26094" g_stop="25592" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E202652" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26094" e_stop="25592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGT</genome_strand>
        <mrna_strand>ATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGGTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGTCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E201105" ref_strand="+" ref_description="SGN-E201105 [cLEC-10-C22]">
      <seq>acaaattaaacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctggcagagtttcaactatcccactgacactttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26405" stop="25296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26105" g_stop="25596" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E201105" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26105" e_stop="25596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTAC</genome_strand>
        <mrna_strand>ACAAATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E207612" ref_strand="+" ref_description="SGN-E207612 [cLEC-32-G12]">
      <seq>acaaattaaacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26405" stop="25328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26105" g_stop="25628" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E207612" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26105" e_stop="25628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTG</genome_strand>
        <mrna_strand>ACAAATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E207621" ref_strand="+" ref_description="SGN-E207621 [cLEC-32-K10]">
      <seq>ttaaacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaggtaaattcgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26400" stop="25328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26100" g_stop="25628" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E207621" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26100" e_stop="25628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTG</genome_strand>
        <mrna_strand>TTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E210904" ref_strand="+" ref_description="SGN-E210904 [cLEC-69-E2]">
      <seq>atgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaaaaggaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26394" stop="25334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26094" g_stop="25634" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E210904" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26094" e_stop="25634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATT</genome_strand>
        <mrna_strand>ATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAAGGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E206303" ref_strand="+" ref_description="SGN-E206303 [cLEC-23-A4]">
      <seq>acatgactacttcatggcctactacacttcttgcttctcgatttcttttcgcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26396" stop="25343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26096" g_stop="25643" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E206303" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26096" e_stop="25643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAA</genome_strand>
        <mrna_strand>ACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCGATTTCTTTTCGCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E205064" ref_strand="+" ref_description="SGN-E205064 [cLEC-16-J12]">
      <seq>acaaattaaacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataaaggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26405" stop="25344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26105" g_stop="25644" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E205064" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26105" e_stop="25644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAA</genome_strand>
        <mrna_strand>ACAAATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAAGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E205355" ref_strand="+" ref_description="SGN-E205355 [cLEC-25-D24]">
      <seq>acaaattaaacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaacacggccaataagggggtgacagggttcaagttgttacctaacggtaacatggtgctacatgacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26405" stop="25345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26105" g_stop="25645" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E205355" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26105" e_stop="25645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAA</genome_strand>
        <mrna_strand>ACAAATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E564798" ref_strand="+" ref_description="SGN-E564798 [3047]">
      <seq>gtctccttcatggcctactacacttcttgcctctctatttcttttctcccaaatattttcttgcattgctcaagttccacttgaaaacaccttcaaattcgtcaatgaaggcgaattaggaccttatgttgtagaatacagagcagactatcgcgttattggtatttttaataacccatttcagctctgtttctacaacacaactcctaatgcatggacattagcgttgcgaatgggcactgtccgttctgaatcactcatgcgttgggtgtgggaagcaaataggggaaaccccgttaaagaaaacgcgacatttacgtttggaactaacggaaatctcgtattggcggatgctgacggtcgaattgcttggcagaccaacacggccaataagggggtgacagggttcaagttgttacctaacggtcacattggtgctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26392" stop="25352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26092" g_stop="25652" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E564798" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E564798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26092" e_stop="25652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACA-TGGTGCTACA</genome_strand>
        <mrna_strand>GTCTCCTTCATGGCCTACTACACTTCTTGCCTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCTCAAGTTCCACTTGAAAACACCTTCAAATTCGTCAATGAAGGCGAATTAGGACCTTATGTTGTAGAATACAGAGCAGACTATCGCGTTATTGGTATTTTTAATAACCCATTTCAGCTCTGTTTCTACAACACAACTCCTAATGCATGGACATTAGCGTTGCGAATGGGCACTGTCCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAATAGGGGAAACCCCGTTAAAGAAAACGCGACATTTACGTTTGGAACTAACGGAAATCTCGTATTGGCGGATGCTGACGGTCGAATTGCTTGGCAGACCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTCACATTGGTGCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E204461" ref_strand="+" ref_description="SGN-E204461 [cLEC-24-E1]">
      <seq>acatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26396" stop="25410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26096" g_stop="25710" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E204461" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26096" e_stop="25710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACA</genome_strand>
        <mrna_strand>ACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E208338" ref_strand="+" ref_description="SGN-E208338 [cLEC-37-M11]">
      <seq>atgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggcagagcaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26394" stop="25410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26094" g_stop="25710" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E208338" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26094" e_stop="25710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACA</genome_strand>
        <mrna_strand>ATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E208501" ref_strand="+" ref_description="SGN-E208501 [cLEC-39-M23]">
      <seq>atgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgacggtcgaatcgcttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26394" stop="25419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26094" g_stop="25719" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E208501" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26094" e_stop="25719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGC</genome_strand>
        <mrna_strand>ATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E203554" ref_strand="+" ref_description="SGN-E203554 [cLEC-15-N7]">
      <seq>ttaaacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26400" stop="25435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26100" g_stop="25735" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E203554" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26100" e_stop="25735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGAC</genome_strand>
        <mrna_strand>TTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E204676" ref_strand="+" ref_description="SGN-E204676 [cLEC-14-D23]">
      <seq>acaaattaaacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaagggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26405" stop="25436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26105" g_stop="25736" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E204676" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26105" e_stop="25736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGA</genome_strand>
        <mrna_strand>ACAAATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAAGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E204914" ref_strand="+" ref_description="SGN-E204914 [cLEC-14-N20]">
      <seq>ttaaacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtattggccgatgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26400" stop="25436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26100" g_stop="25736" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E204914" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26100" e_stop="25736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGA</genome_strand>
        <mrna_strand>TTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E208209" ref_strand="+" ref_description="SGN-E208209 [cLEC-37-G16]">
      <seq>aattaaacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccggtccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatctcgtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26402" stop="25448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26102" g_stop="25748" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E208209" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26102" e_stop="25748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATT</genome_strand>
        <mrna_strand>AATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGGTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E203850" ref_strand="+" ref_description="SGN-E203850 [cLEC-17-O19]">
      <seq>acaaattaaacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccccgttaaagaaaacgcgacattcacgtttggaactaacggaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26405" stop="25454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26105" g_stop="25754" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E203850" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26105" e_stop="25754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCT</genome_strand>
        <mrna_strand>ACAAATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E206340" ref_strand="+" ref_description="SGN-E206340 [cLEC-23-B5]">
      <seq>acatgactacttcatggcctactacacttcttgcttcggtatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaagcaaacaggggaaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26396" stop="25499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26096" g_stop="25799" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E206340" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26096" e_stop="25799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCC</genome_strand>
        <mrna_strand>ACATGACTACTTCATGGCCTACTACACTTCTTGCTTCGGTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E204359" ref_strand="+" ref_description="SGN-E204359 [cLEC-13-M10]">
      <seq>ttaaacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcactgttcgttctgaatcactcatgcgttgggtgtgggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26400" stop="25515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26100" g_stop="25815" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E204359" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26100" e_stop="25815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAG</genome_strand>
        <mrna_strand>TTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E208619" ref_strand="+" ref_description="SGN-E208619 [cLEC-39-I13]">
      <seq>actacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccggtccagctctgtttctacaacacaactcctaatgcgtggacattagcgttgcgaatgggcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26391" stop="25553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26091" g_stop="25853" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E208619" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26091" e_stop="25853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCAC</genome_strand>
        <mrna_strand>ACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGGTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E211093" ref_strand="+" ref_description="SGN-E211093 [cLEC-69-J19]">
      <seq>agaaacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgttttctacacacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26398" stop="25589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26100" g_stop="25889" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E211093" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>212</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26100" e_stop="25889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTG-TTTCTACAACACAAC</genome_strand>
        <mrna_strand>AGAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTTCTAC-ACACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E210583" ref_strand="+" ref_description="SGN-E210583 [cLEC-68-C1]">
      <seq>ttaaacatgactacttcatggcctactacacttcttgcttctctatttcttttctcccaaatattttcttgcattgccctagttccacttgaaaacacctttgaattcgtcaacgaaggcgaattaggaccttatatcgtagaatatcaagcagattatcgtgttcttagtgttttcaataatccgttccagctctgtttctacaacacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="26400" stop="25589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26100" g_stop="25889" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E210583" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>212</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26100" e_stop="25889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAAC</genome_strand>
        <mrna_strand>TTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E560563" ref_strand="+" ref_description="SGN-E560563 [20237]">
      <seq>ttctggatggggaagaggggtttcaggactataatttttttgtgaagttgtttaagcaggatgatgggttaagagagtactatgagaaaaatcgagagaatggggtgttttgttgtcttgtttgttgtggggttcgtgagaaagggtggaagaggtttaaggattgttcatctcttgttcagcattccataagcattgcgaaaacctctaagagacgagctcatcgtgcttactgtaaggtcgtctgtgaaattcttggctgggatgttaatagcctgccttccattgtcctctctgcaagcgttaagctcggtgaatcttctgataaaccagttaaggctcaggggaatgtagatgatgatggtggggatgacggtttgagtggtcattgcaaatccacaagttctgtaagtatcagcgatactgaagtatctctgtcgaagctgtctttgattgataaaagccaacaaggaaaagattgttgctctgcaaaattagagaactctctaagtggagccactgttgatagaagcttgggagatcccagcaaaggtacttctgaaacaaccaaagagaatgctgagggggagaattccgtgagcaaagctggtgttgatggactcttggaagatctcagctttcttactcttgaaacacaaaaattgaatgcaaagggtgcatctgatcgtgtggtgccttatgaagaaactgggggaatcctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="30324" stop="27932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30024" g_stop="29681" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29680" i_stop="29442" i_length="239">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.77"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29441" g_stop="29289" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="500" r_length="156" r_score="0.856"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29288" i_stop="29199" i_length="90">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29198" g_stop="29112" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="587" r_length="87" r_score="0.920"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29111" i_stop="28339" i_length="773">
            <donor d_prob="0.988" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28338" g_stop="28234" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="692" r_length="105" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E560563" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30024" e_stop="29681"/>
          <exon e_start="29441" e_stop="29289"/>
          <exon e_start="29198" e_stop="29112"/>
          <exon e_start="28338" e_stop="28234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGGATGGGGAAGAGGGGTTTCAGGACTATGATTTTTTTGTGAAGTTGTTCAAGCAGGATGATGGGTTAAGAGAGTACTATGAGAAGAATCGTGAGAATGGGGTGTTTTGTTGTCTTGTTTGTTGTGGGGTTCGTGAGAAAGGGTGGAAGAGGTTTAAGGATTGTTCGTCTCTTGTTCAGCATTCCATAAGCATTGCGAAAACCTCTAAGAGACGAGCTCATCGGGCTTACTGTAAGGTCGTCTGTGAAATTCTTGGCTGGGATGTTGATAGCCTGCCTTCCATTGTCCTCTCTACAGGTGTTAAGCTCGGTGAATCTTCTGATAAACCAGTTAAGGCTCAGGTAACTGTTTACTGTAAGTTTTGGTTTTAATTTGACAAAGCTCAACAATTTGATTGTAAATCATCCCCAAATTGATAGATAGACTATTATATACTGAATATGTTAGTTAGTTTGTGTCCTATATGTACAAGCTTCGAGCTATCTAAATGCTTATGTCAAGCAGAGTGAAATAAATATGTCTGTCAAGTCATTACCTTGACATGCAAAGCCAATGTCTTTATCAGTTTGCAATCTTGCAGGGCAATGT---CGATGATGGTGGTGATGACAGTTTGAGTGGTCAATGCAAATCCACAAGTTCTGTTAGTGTCAGTGAGACTGAAGTGTCTCTGTCGAAATTGTCTTTGATTGATGAAAGGCAACCAGGAAAAGATTGTTGCTCTGCAGAATTAGAGGTTTGTTTGATGGCTAGTATTTTCTCTGTACTATGTATGTTGAATGAGATTATGCTAAGTTTTAGCTGACCTGTATTTTGTATTTAGCAGGACTCTCTAAGTGGAGCCACTGTTGATAGAAGCTTGGGCGATCTCGGCAAAGGTACTTCTGACACAATGAAAGAGAATGCTGAGGGGGTGAGTTTTTTGATATTGCATTTAGTTCCCATGGTAATGTCCTGCTATGCTAAGTTGCGCAGATGTGGGTGCGGGTGTCTGATACGGGTGTGGATCTAGAGGTAGGATCCTTCATGATCTAATTTTTAATATTCGAGGATATGGATCCGTAAATTGATACGGGTGTGGGGATTTGCCAAAAAATAATTGAAATATCTAAAAATAGAGTTATAAAACATAATTTATGAGATATTTTGTGGAGAACTTGGTGAGAATCCTAGAAGGCAATTAAAGGAAAAGGAGTGACATAGAAATTTCTATATAGAAGGTATTTCATTTTCTTCAATTTCATCTTAGCTTTTGTATTGATTATAGAAATCATTAAAACTGTCCAGTCTTTCCCCATCGATTTTGGTCGAAGTACCCATAATTGGTTGACCAAATCGGACACAGATCCCACACCCACACCCATATTGTGTACCGGCGCCAAAAGTGAAAGAGTCCGAGCAACTTAGGTATAGTCAAGTGTCTGGACTTACCATGTATGTTATTGTATTTTATCTTTTGTAATTCACTTGCAAGTGTCAACGGAAGTTGTGATGATCCCAGCAGTAGGATTACGTAAACACTAAAAAGAATTTGGAGGGGGGGGATTTGTCATGTCCGGTGAAGTTTTTGGGCTCGTATCTCTTCTTTTCAATTTCTGTGTGTGTATGTCTCTCTATTTCTTCTATGTTATGATTATTACATAGCTGGAATTTCACACCATTTGATTGGCTTGTATGTTGTTTTAGGAGAATTCTGTGAGCAAAGCTGGTGTTGATGGACTCTTGGAAGATCTCAGCCTTCTTACTCTTGAAACACAAAAATTGAATGGAAAGGGTGCATCTGATCGTGTG</genome_strand>
        <mrna_strand>TTCTGGATGGGGAAGAGGGGTTTCAGGACTATAATTTTTTTGTGAAGTTGTTTAAGCAGGATGATGGGTTAAGAGAGTACTATGAGAAAAATCGAGAGAATGGGGTGTTTTGTTGTCTTGTTTGTTGTGGGGTTCGTGAGAAAGGGTGGAAGAGGTTTAAGGATTGTTCATCTCTTGTTCAGCATTCCATAAGCATTGCGAAAACCTCTAAGAGACGAGCTCATCGTGCTTACTGTAAGGTCGTCTGTGAAATTCTTGGCTGGGATGTTAATAGCCTGCCTTCCATTGTCCTCTCTGCAAGCGTTAAGCTCGGTGAATCTTCTGATAAACCAGTTAAGGCTCAG...............................................................................................................................................................................................................................................GGGAATGTAGATGATGATGGTGGGGATGACGGTTTGAGTGGTCATTGCAAATCCACAAGTTCTGTAAGTATCAGCGATACTGAAGTATCTCTGTCGAAGCTGTCTTTGATTGATAAAAGCCAACAAGGAAAAGATTGTTGCTCTGCAAAATTAGAG..........................................................................................AACTCTCTAAGTGGAGCCACTGTTGATAGAAGCTTGGGAGATCCCAGCAAAGGTACTTCTGAAACAACCAAAGAGAATGCTGAGGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAATTCCGTGAGCAAAGCTGGTGTTGATGGACTCTTGGAAGATCTCAGCTTTCTTACTCTTGAAACACAAAAATTGAATGCAAAGGGTGCATCTGATCGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E217171" ref_strand="+" ref_description="SGN-E217171 [cLEL-1-O22]">
      <seq>tgtgaatgttgtgttttgttgtcttgtttgttgtggggttcgtgagaaagggtggaagaggtttaaggattgttcgtctcttgttcagcattccataagcattgcgaaaacctctaagagacgagctcatcgggcttactgtaaggtcgtctgtgaaattcttggctgggatgttgatagcctgccttccattgtcctctctacaggtgttaagctcggtgaatcttctgataaaccagttaaggctcagggcaatgtcgatgatggtggtgatgacagtttgagtggtcaatgcaaatccacaagttctgttagtgtcagtgagactgaagtgtctctgtcgaaattgtctttgattgatgaaaggcaaccaggaaaagattgctgctctgcagaattagaggactctctaagtggagccactgttgatagaagcttgggcgatctcggcaaaggtacttctgacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="30230" stop="28833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29930" g_stop="29681" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29680" i_stop="29442" i_length="239">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29441" g_stop="29289" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="403" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29288" i_stop="29199" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29198" g_stop="29133" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="469" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E217171" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29930" e_stop="29681"/>
          <exon e_start="29441" e_stop="29289"/>
          <exon e_start="29198" e_stop="29133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAATGGGGTGTTTTGTTGTCTTGTTTGTTGTGGGGTTCGTGAGAAAGGGTGGAAGAGGTTTAAGGATTGTTCGTCTCTTGTTCAGCATTCCATAAGCATTGCGAAAACCTCTAAGAGACGAGCTCATCGGGCTTACTGTAAGGTCGTCTGTGAAATTCTTGGCTGGGATGTTGATAGCCTGCCTTCCATTGTCCTCTCTACAGGTGTTAAGCTCGGTGAATCTTCTGATAAACCAGTTAAGGCTCAGGTAACTGTTTACTGTAAGTTTTGGTTTTAATTTGACAAAGCTCAACAATTTGATTGTAAATCATCCCCAAATTGATAGATAGACTATTATATACTGAATATGTTAGTTAGTTTGTGTCCTATATGTACAAGCTTCGAGCTATCTAAATGCTTATGTCAAGCAGAGTGAAATAAATATGTCTGTCAAGTCATTACCTTGACATGCAAAGCCAATGTCTTTATCAGTTTGCAATCTTGCAGGGCAATGTCGATGATGGTGGTGATGACAGTTTGAGTGGTCAATGCAAATCCACAAGTTCTGTTAGTGTCAGTGAGACTGAAGTGTCTCTGTCGAAATTGTCTTTGATTGATGAAAGGCAACCAGGAAAAGATTGTTGCTCTGCAGAATTAGAGGTTTGTTTGATGGCTAGTATTTTCTCTGTACTATGTATGTTGAATGAGATTATGCTAAGTTTTAGCTGACCTGTATTTTGTATTTAGCAGGACTCTCTAAGTGGAGCCACTGTTGATAGAAGCTTGGGCGATCTCGGCAAAGGTACTTCTGACACA</genome_strand>
        <mrna_strand>TGTGAATGTTGTGTTTTGTTGTCTTGTTTGTTGTGGGGTTCGTGAGAAAGGGTGGAAGAGGTTTAAGGATTGTTCGTCTCTTGTTCAGCATTCCATAAGCATTGCGAAAACCTCTAAGAGACGAGCTCATCGGGCTTACTGTAAGGTCGTCTGTGAAATTCTTGGCTGGGATGTTGATAGCCTGCCTTCCATTGTCCTCTCTACAGGTGTTAAGCTCGGTGAATCTTCTGATAAACCAGTTAAGGCTCAG...............................................................................................................................................................................................................................................GGCAATGTCGATGATGGTGGTGATGACAGTTTGAGTGGTCAATGCAAATCCACAAGTTCTGTTAGTGTCAGTGAGACTGAAGTGTCTCTGTCGAAATTGTCTTTGATTGATGAAAGGCAACCAGGAAAAGATTGCTGCTCTGCAGAATTAGAG..........................................................................................GACTCTCTAAGTGGAGCCACTGTTGATAGAAGCTTGGGCGATCTCGGCAAAGGTACTTCTGACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E476119" ref_strand="+" ref_description="SGN-E476119 [cSTB-43-K14]">
      <seq>tttagaaagcaaaaatggcctggaaaaccgatactgaccttataaattccgaccctattccatattccggcgatgttgagaggccttgtaaacccgtcattgaatcttcaggctggcctactagttggcaaaacgacagtaacaaatcaaagctacaaacccctttacctaccgccgaaaacgaagctgcgaacaacagtcaacttccggcattgctcaaagttgctgaatatttgaactccacactcagtctagacgacgatgacgagttttctgagtatataggtgaagatggggattatttcatcaatggggatgagggttttctggatggggaagaggggtttcaggactatgatttttttgtgaagttgtttaagcaggatgatgggttaagaaagtactatgagaaaaatcgagagaatggagtgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="30648" stop="29615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30348" g_stop="29915" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E476119" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30348" e_stop="29915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGGAAGCAAAAATGGCCTGGAAAACGGATACTGACCTCGAAAATTCCGACCCAATTTCAGAATCCGGCGATGTTGAGTGGCCTTGTAAACCCGTCGTTGAATCGTCAGGCTGGCCTACTAGCTGGCAAAACGACAGTAACAAATCAAAGCTACAAACCCCTTTACCTACCGCCGAAGACGAAGCTGCGAACAACAGTCAACTTCCGGCATTGCTCAAAGTTGCTGAATATTTGAACTCCACACTCAGTCTCGACGACGATGACGAGTTTTCTGAGTATATAGGTGAAAATGGGGATTATTTCATCAATGACGATGAGGGTTTTCTGGATGGGGAAGAGGGGTTTCAGGACTATGATTTTTTTGTGAAGTTGTTCAAGCAGGATGATGGGTTAAGAGAGTACTATGAGAAGAATCGTGAGAATGGGGTGTTT</genome_strand>
        <mrna_strand>TTTAGAAAGCAAAAATGGCCTGGAAAACCGATACTGACCTTATAAATTCCGACCCTATTCCATATTCCGGCGATGTTGAGAGGCCTTGTAAACCCGTCATTGAATCTTCAGGCTGGCCTACTAGTTGGCAAAACGACAGTAACAAATCAAAGCTACAAACCCCTTTACCTACCGCCGAAAACGAAGCTGCGAACAACAGTCAACTTCCGGCATTGCTCAAAGTTGCTGAATATTTGAACTCCACACTCAGTCTAGACGACGATGACGAGTTTTCTGAGTATATAGGTGAAGATGGGGATTATTTCATCAATGGGGATGAGGGTTTTCTGGATGGGGAAGAGGGGTTTCAGGACTATGATTTTTTTGTGAAGTTGTTTAAGCAGGATGATGGGTTAAGAAAGTACTATGAGAAAAATCGAGAGAATGGAGTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E223625" ref_strand="+" ref_description="SGN-E223625 [cLEL-14-L10]">
      <seq>aacatttcataaaaccctttattttctacatcgcccaagaagaaattttaggaagcaaaaatggcctggaaaacggatactgacctcgaaaattccgacccaatttcagaatccggcgatgttgagtggccttgtaaacccgccgatgaatcgtcaggctggcctactagctggcaaaacgacagtaacaaatcaaagctacaaacccctttacctaccgccgaagacgaagctgcgaacaacagtcaacttccggcattgctcaaagttgctgaatatttgaactccacactcagtctcgacgacgatgacgagttttctgagtatataggtgaaaatggggattatttcatcaatgacgatgagggttttctggatggggagagggggttttaggactatgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="30694" stop="29688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30394" g_stop="29988" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E223625" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30394" e_stop="29988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTTCATAAAACCCTTCAAATTCTACATCGCCCAAGAAGAAATTTTAGGAAGCAAAAATGGCCTGGAAAACGGATACTGACCTCGAAAATTCCGACCCAATTTCAGAATCCGGCGATGTTGAGTGGCCTTGTAAACCCGTCGTTGAATCGTCAGGCTGGCCTACTAGCTGGCAAAACGACAGTAACAAATCAAAGCTACAAACCCCTTTACCTACCGCCGAAGACGAAGCTGCGAACAACAGTCAACTTCCGGCATTGCTCAAAGTTGCTGAATATTTGAACTCCACACTCAGTCTCGACGACGATGACGAGTTTTCTGAGTATATAGGTGAAAATGGGGATTATTTCATCAATGACGATGAGGGTTTTCTGGATGGGGAAGAGGGGTTTCAGGACTATGATTT</genome_strand>
        <mrna_strand>AACATTTCATAAAACCCTTTATTTTCTACATCGCCCAAGAAGAAATTTTAGGAAGCAAAAATGGCCTGGAAAACGGATACTGACCTCGAAAATTCCGACCCAATTTCAGAATCCGGCGATGTTGAGTGGCCTTGTAAACCCGCCGATGAATCGTCAGGCTGGCCTACTAGCTGGCAAAACGACAGTAACAAATCAAAGCTACAAACCCCTTTACCTACCGCCGAAGACGAAGCTGCGAACAACAGTCAACTTCCGGCATTGCTCAAAGTTGCTGAATATTTGAACTCCACACTCAGTCTCGACGACGATGACGAGTTTTCTGAGTATATAGGTGAAAATGGGGATTATTTCATCAATGACGATGAGGGTTTTCTGGATGGGGAGAGGGGGTTTTAGGACTATGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E223275" ref_strand="+" ref_description="SGN-E223275 [cLEL-14-L10]">
      <seq>aacatttcataaaacccttcaaattctacatcgcccaagaagaaattttaggaagcaaaaatggcctggaaaacggatactgacctcgaaaattccgacccactttcagaattcggcgatgtcgagtggccttgtaaacccgacgctgaatcgtcaggctggcctactagctggcaaaacgacagtaacaaatcaaagctacaaacccctttacctaccgccgaagacgaagctgcgaacaacagtcaacttccggcattgctcaaagttgctgaatatttgaactccacactcagtctcgacgacgatgacgagttttctgagtatataggtgaaaatggggattatttcatcaatgacgatgagggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="30694" stop="29726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30394" g_stop="30026" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E223275" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30394" e_stop="30026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTTCATAAAACCCTTCAAATTCTACATCGCCCAAGAAGAAATTTTAGGAAGCAAAAATGGCCTGGAAAACGGATACTGACCTCGAAAATTCCGACCCAATTTCAGAATCCGGCGATGTTGAGTGGCCTTGTAAACCCGTCGTTGAATCGTCAGGCTGGCCTACTAGCTGGCAAAACGACAGTAACAAATCAAAGCTACAAACCCCTTTACCTACCGCCGAAGACGAAGCTGCGAACAACAGTCAACTTCCGGCATTGCTCAAAGTTGCTGAATATTTGAACTCCACACTCAGTCTCGACGACGATGACGAGTTTTCTGAGTATATAGGTGAAAATGGGGATTATTTCATCAATGACGATGAGGGT</genome_strand>
        <mrna_strand>AACATTTCATAAAACCCTTCAAATTCTACATCGCCCAAGAAGAAATTTTAGGAAGCAAAAATGGCCTGGAAAACGGATACTGACCTCGAAAATTCCGACCCACTTTCAGAATTCGGCGATGTCGAGTGGCCTTGTAAACCCGACGCTGAATCGTCAGGCTGGCCTACTAGCTGGCAAAACGACAGTAACAAATCAAAGCTACAAACCCCTTTACCTACCGCCGAAGACGAAGCTGCGAACAACAGTCAACTTCCGGCATTGCTCAAAGTTGCTGAATATTTGAACTCCACACTCAGTCTCGACGACGATGACGAGTTTTCTGAGTATATAGGTGAAAATGGGGATTATTTCATCAATGACGATGAGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E229159" ref_strand="-" ref_description="SGN-E229159 [cLEL-29-H23]">
      <seq>gtctcattgccaatgatcttattgcatcatgataaagatatatggggtgaagatgcaaacgagttcaatccagagagatttagagaaggaatatcaagtgcaacaaaaggtaaagttacatattttccattttcatggggtccaagaatatgcattggacaaaattttgccatgttagaagcaaagatggctttgtgtatgatcctacaaagcttctcttttgaattgtctccatcttacacacatgctcctaaatccttagtaaccatgcagcctcagtatggtgctccacttattttgcacaaactttagttttgtaatgtaatgtaacaagaattaatataaagactcaaataaggggtggagtttgcaatattaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="35161" stop="34180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34861" g_stop="34483" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34482" i_stop="34190" i_length="293">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34189" g_stop="34180" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="389" r_length="10" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E229159" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229159" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="34861" e_stop="34483"/>
          <exon e_start="34189" e_stop="34180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCATTGCCAATGATCTTATGNCATCATGATAAAGATATATGGGGTGAAGATGC-AACGAGTTTCAATCCAGAGAGATTTAGAGAAGGAATATCAAGTGCAACAAAAGGTAAAGTTACATATTTTCCATTTTCATGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATGTTAGAAGCAAAGATGGCTTTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCTTACACACATGCTCCTAAATCCTTAGTAACCATGCAGCCTCAGTATGGTGCTCCACTTATTTTGCACAAACTTTAGTTTTGTAATGTAATGTAACAAGAATTAATATAAAGACTCAAATAAGGGGTGGAGTTTGCAATATTAAATATGGATCGTTTGTGAGAGATGTCTTGTAATATAGGTAAGAGTTAAAAGGGATGAAGTTGCAATTTTTTAGGGCTCGTTTAAATATGTGATATGAAATTATGATTTTAATTTGTTTAGACGTAATATGAATCATCACTTATACATTAATAATCTGCCTGTGATTTTAATATTTTTCTTAATTAGTTCTTATCTTAGTCTAATTATTTATTTGTCATGTATTTTTTTTAAATTTTACAAACGGTAGCTAATATTTTTATCTTTGTATTTTGCTTTTATTCTTTAAATAAATAGACAAAGGGAC</genome_strand>
        <mrna_strand>GTCTCATTGCCAATGATCTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAAACGAG-TTCAATCCAGAGAGATTTAGAGAAGGAATATCAAGTGCAACAAAAGGTAAAGTTACATATTTTCCATTTTCATGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATGTTAGAAGCAAAGATGGCTTTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCTTACACACATGCTCCTAAATCCTTAGTAACCATGCAGCCTCAGTATGGTGCTCCACTTATTTTGCACAAACTTTAGTTTTGTAATGTAATGTAACAAGAATTAATATAAAGACTCAAATAAGGGGTGGAGTTTGCAATATTAA.....................................................................................................................................................................................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E228679" ref_strand="-" ref_description="SGN-E228679 [cLEL-29-H23]">
      <seq>tagtattaggagaattgtgtctaccagctggtgtactagtctcattgccaatgatcttattgcatcatgataaagatatatggggtgaagatgcaaacgagttcaatccagagagatttagagaaggaatatcaagtgcaacaaaaggtaaagttacatattttccattttcatggggtccaagaatatgcattggacaaaattttgccatgttagaagcaaagatggctttgtgtatgatcctacaaagcttctcttttgaattgtctccatcttacacacatgctcctaaatccttagtaaccatgcagcctcagtatggtgctccacttattttgcacaaactttagttttgtaatgtaatgtaacaagaattaatataaagactcaaataaggggtggagtttgcaatattaaccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="35199" stop="34183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34899" g_stop="34483" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34482" i_stop="34190" i_length="293">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34189" g_stop="34183" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="424" r_length="7" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="425" polyA_stop="435"/>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E228679" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228679" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="34899" e_stop="34483"/>
          <exon e_start="34189" e_stop="34183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTATTAGGAGAATTGTGTCTACCAGCTGGTGTACTAGTCTCATTGCCAATGATCTTATGNCATCATGATAAAGATATATGGGGTGAAGATGC-AACGAGTTTCAATCCAGAGAGATTTAGAGAAGGAATATCAAGTGCAACAAAAGGTAAAGTTACATATTTTCCATTTTCATGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATGTTAGAAGCAAAGATGGCTTTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCTTACACACATGCTCCTAAATCCTTAGTAACCATGCAGCCTCAGTATGGTGCTCCACTTATTTTGCACAAACTTTAGTTTTGTAATGTAATGTAACAAGAATTAATATAAAGACTCAAATAAGGGGTGGAGTTTGCAATATTAAATATGGATCGTTTGTGAGAGATGTCTTGTAATATAGGTAAGAGTTAAAAGGGATGAAGTTGCAATTTTTTAGGGCTCGTTTAAATATGTGATATGAAATTATGATTTTAATTTGTTTAGACGTAATATGAATCATCACTTATACATTAATAATCTGCCTGTGATTTTAATATTTTTCTTAATTAGTTCTTATCTTAGTCTAATTATTTATTTGTCATGTATTTTTTTTAAATTTTACAAACGGTAGCTAATATTTTTATCTTTGTATTTTGCTTTTATTCTTTAAATAAATAGACAAAGG</genome_strand>
        <mrna_strand>TAGTATTAGGAGAATTGTGTCTACCAGCTGGTGTACTAGTCTCATTGCCAATGATCTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAAACGAG-TTCAATCCAGAGAGATTTAGAGAAGGAATATCAAGTGCAACAAAAGGTAAAGTTACATATTTTCCATTTTCATGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATGTTAGAAGCAAAGATGGCTTTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCTTACACACATGCTCCTAAATCCTTAGTAACCATGCAGCCTCAGTATGGTGCTCCACTTATTTTGCACAAACTTTAGTTTTGTAATGTAATGTAACAAGAATTAATATAAAGACTCAAATAAGGGGTGGAGTTTGCAATATTAA.....................................................................................................................................................................................................................................................................................................CCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E350838" ref_strand="+" ref_description="SGN-E350838 [cTOS-7-I23]">
      <seq>ttggaagtagttatgaagaaggtagaaagatttttgaacttcaaacggaacaagctcagaattttatcgacgctgtacgtgaagtttatatcccagggcggagatttttgccaacaaagaggaacagaagaatgaaggaaataaaaaacgaagttcggacctcagttaaaggtattatcgataaaagaatgaaggcaatgaaagcagggaatgccgataataatgaggatctgttaggcatattgcttgaatcaaatttcaaagaaattgaacagcacggtaacaaggattttggaatgagcatcgaagaagtcatcgaagaatgcaagttattctattttgctggccaagaaactacatcagtcttactcgtgtggactctggtgttgttgagtcggtatcaagattggcagacacaggccagagaagaagtcttgcaagtgtttgagagtcggaaaccagattttgatggattaaatcatctaaaagttgtaacaatgatcttgtacgagtcattacggctatatcccccattgataacacttaatcgacaggttaacgaagacatagtattaggagaattgtgtctaccagctggtgtactagtctcattgccaatgatcttattgcatcatgataaagatatatgggggtgaagatgcaaacgagttcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="36220" stop="34492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35920" g_stop="35818" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35817" i_stop="35544" i_length="274">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35543" g_stop="35156" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="491" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35155" i_stop="34976" i_length="180">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34975" g_stop="34792" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="676" r_length="185" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E350838" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35920" e_stop="35818"/>
          <exon e_start="35543" e_stop="35156"/>
          <exon e_start="34975" e_stop="34792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAAGTAGTTATGAAGAAGGTAGAAAGATTTTTGAACTTCAAACGGAACAAGCTCAGAATTTTATCGACGCTGTACGTGAAGTTTATATCCCAGGGCGGAGGTAAGTTAATTTATCCTAGGAATTGAAAAACGGTAGTCATAGCTATGTTGTTCAAACCCTTCAAAAATGATGACAGTTGGAATTCCGATCCTCCAAAAATAGCGTTTTTTTGGAGGATCCGACATGAATGCAGTAACGTTTTTTTGGAGAGTCGGAACAACATAGAGCCAAAGTGGTCTATTATAAACTACAAAGTTCATTAGGAGATGCACATAGCTTTTACTTCATCTAATTAATGCATTTTGGTTTTCTGGCTTATAATATAATCTCAAAGATTTTTGCCAACAAAGAGGAACAGAAGAATGAAGGAAATAAAAAACGAAGTTCGGACCTCAGTTAAAGGTATTATCGATAAAAGAATGAAGGCAATGAAAGCAGGGAATGCCGATAATAATGAGGATCTGTTAGGCATATTGCTTGAATCAAATTTCAAAGAAATTGAACAGCACGGTAACAAGGATTTTGGAATGAGCATCGAAGAAGTCATCGAAGAATGCAAGTTATTCTATTTTGCTGGCCAAGAAACTACATCAGTCTTACTCGTGTGGACTCTGGTGTTGTTGAGTCGGTATCAAGATTGGCAGACACAGGCCAGAGAAGAAGTCTTGCAAGTGTTTGAGAGTCGGAAACCAGATTTTGATGGATTAAATCATCTAAAAGTTGTGAGTATTCTGTTTTTTTTTGTTTGTTTTTGGTTTACTTCATCTAAAAGCAGAAGTAGTACTTTGGTAGAGGTGATTAGACAAGGCATAACGCAACTTCAGTTTACCGAGGACCTGACTTTAGTACTCTAGTGAATTCATGCTAAGATATACACCTAAAGGAGAAGCAATTTTTCGCAGGTAACAATGATCTTGTACGAGTCATTACGGCTATATCCCCCATTGATAACACTTAATCGACAGGTTAACGAAGACATAGTATTAGGAGAATTGTGTCTACCAGCTGGTGTACTAGTCTCATTGCCAATGATCTTATGNCATCATGATAAAGATATAT-GGGGTGAAGATGC-AACGAGTTTCAATC</genome_strand>
        <mrna_strand>TTGGAAGTAGTTATGAAGAAGGTAGAAAGATTTTTGAACTTCAAACGGAACAAGCTCAGAATTTTATCGACGCTGTACGTGAAGTTTATATCCCAGGGCGGAG..................................................................................................................................................................................................................................................................................ATTTTTGCCAACAAAGAGGAACAGAAGAATGAAGGAAATAAAAAACGAAGTTCGGACCTCAGTTAAAGGTATTATCGATAAAAGAATGAAGGCAATGAAAGCAGGGAATGCCGATAATAATGAGGATCTGTTAGGCATATTGCTTGAATCAAATTTCAAAGAAATTGAACAGCACGGTAACAAGGATTTTGGAATGAGCATCGAAGAAGTCATCGAAGAATGCAAGTTATTCTATTTTGCTGGCCAAGAAACTACATCAGTCTTACTCGTGTGGACTCTGGTGTTGTTGAGTCGGTATCAAGATTGGCAGACACAGGCCAGAGAAGAAGTCTTGCAAGTGTTTGAGAGTCGGAAACCAGATTTTGATGGATTAAATCATCTAAAAGTT....................................................................................................................................................................................GTAACAATGATCTTGTACGAGTCATTACGGCTATATCCCCCATTGATAACACTTAATCGACAGGTTAACGAAGACATAGTATTAGGAGAATTGTGTCTACCAGCTGGTGTACTAGTCTCATTGCCAATGATCTTATTGCATCATGATAAAGATATATGGGGGTGAAGATGCAAACGAG-TTCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E235989" ref_strand="+" ref_description="SGN-E235989 [cLED-16-E20]">
      <seq>cgaaaacctatttgtatcaaaagcccggtggaaatccatttgcagcattattggtacaaggactagcaacctatgaagaagataaatgggccaaacatagaaaaattatcaatcccgctttccatctagagaagcttaagcatatgctcccagcttttcacttgagctgtactgaaatgctgagcaaatgggaagatgctgttccacttggcagctctcgtgagatagatgtatggcctcaccttcagcaattaacttgtgatgtaatctctcggacagcttttggaagtagttatgaagaaggtagaaagatttttgaacttcaaacggaacaagctcagaattttatcgacgctgtacgtgaagtttatatcccagggcggagatttttgccaacaaagaggaacagaagaatgaaggaaataaaaaacgaagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="37039" stop="35191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36739" g_stop="36600" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36599" i_stop="36063" i_length="537">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36062" g_stop="35818" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="385" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35817" i_stop="35544" i_length="274">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35543" g_stop="35491" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="438" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E235989" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36739" e_stop="36600"/>
          <exon e_start="36062" e_stop="35818"/>
          <exon e_start="35543" e_stop="35491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACCTATTTGTATCAAAAGCCCGGTGGAAATCCATTTGCAGCATTATTGGTACAAGGACTAGCAACCTATGAAGAAGATAAATGGGCCAAACATAGAAAAATTATCAATCCCGCTTTCCATCTAGAGAAGCTTAAGGTTGCTTTTCTTCCGCGCCCTCCTTCAAACTTTGTGATTGGTCAACTAGAAATTATTATGTTTGTACACGACGGATAAAATGCTGGCTCATGCTTCTTTAGCTACTGCTCTCTACAAGTCTTTCTATCCCCTTTAATTCGCTATCCTTATCTTTCTATCTAATGTTTTATGTATTCTGCATATGACTATTGCAATTAAATCCTGATATTTAACTTGAGTTAGACAAGTATAGAAGGGTCTTATGGTTCTTCAGTGTCAAATCTCGTCTGCATCAGCGTTCAATGTTCTAGTTTTTTCATCCACTAAACTATAAAAATGCTCACTCTTGCTTCTCTGGCTACATTTGTTGTGTAATGTCTTAGATATATTATGGATCTGTTTTTATTATAAAGAGATTTGTAATATTCCTGACCGTGTTTCGCCTTATTTGTTATTTGAACTCTGTTCTTTTTTATCGAACTAGATACTGACGGTATCACTATATCTGTATTAGCTAATTCTGTTTTAAGTGTTGTCTCGTTGACATTTGTCGAACAGCATATGCTCCCAGCTTTTCACTTGAGCTGTACTGAAATGCTGAGCAAATGGGAAGATGCTGTTCCACTTGGCAGCTCTCGTGAGATAGATGTATGGCCTCACCTTCAGCAATTAACTTGTGATGTAATCTCTCGGACAGCTTTTGGAAGTAGTTATGAAGAAGGTAGAAAGATTTTTGAACTTCAAACGGAACAAGCTCAGAATTTTATCGACGCTGTACGTGAAGTTTATATCCCAGGGCGGAGGTAAGTTAATTTATCCTAGGAATTGAAAAACGGTAGTCATAGCTATGTTGTTCAAACCCTTCAAAAATGATGACAGTTGGAATTCCGATCCTCCAAAAATAGCGTTTTTTTGGAGGATCCGACATGAATGCAGTAACGTTTTTTTGGAGAGTCGGAACAACATAGAGCCAAAGTGGTCTATTATAAACTACAAAGTTCATTAGGAGATGCACATAGCTTTTACTTCATCTAATTAATGCATTTTGGTTTTCTGGCTTATAATATAATCTCAAAGATTTTTGCCAACAAAGAGGAACAGAAGAATGAAGGAAATAAAAAACGAAGTTC</genome_strand>
        <mrna_strand>CGAAAACCTATTTGTATCAAAAGCCCGGTGGAAATCCATTTGCAGCATTATTGGTACAAGGACTAGCAACCTATGAAGAAGATAAATGGGCCAAACATAGAAAAATTATCAATCCCGCTTTCCATCTAGAGAAGCTTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGCTCCCAGCTTTTCACTTGAGCTGTACTGAAATGCTGAGCAAATGGGAAGATGCTGTTCCACTTGGCAGCTCTCGTGAGATAGATGTATGGCCTCACCTTCAGCAATTAACTTGTGATGTAATCTCTCGGACAGCTTTTGGAAGTAGTTATGAAGAAGGTAGAAAGATTTTTGAACTTCAAACGGAACAAGCTCAGAATTTTATCGACGCTGTACGTGAAGTTTATATCCCAGGGCGGAG..................................................................................................................................................................................................................................................................................ATTTTTGCCAACAAAGAGGAACAGAAGAATGAAGGAAATAAAAAACGAAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E239701" ref_strand="+" ref_description="SGN-E239701 [cLED-33-I8]">
      <seq>cgaaaacctatttgtatcaaaagcccggtggaaatccatttgcagcattattggtacaaggactagcaacctatgaagaagataaatgggccaaacatagaaaaattatcaatcccgctttccatctagagaagcttaagcatatgctcccagcttttcacttgagctgtactgaaatgctgagcaaatgggaagatgctgttccacttggcagctctcgtgagatagatgtatggcctcaccttcagcaattaacttgtgatgtaatctctcggacagcttttggaagtagttatgaagaaggtagaaagatttttgaacttcaaacggaacaagctcagaattttatcgacgctgtacgtgaagtttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="37039" stop="35531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36739" g_stop="36600" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36599" i_stop="36063" i_length="537">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36062" g_stop="35831" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="372" r_length="232" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E239701" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36739" e_stop="36600"/>
          <exon e_start="36062" e_stop="35831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACCTATTTGTATCAAAAGCCCGGTGGAAATCCATTTGCAGCATTATTGGTACAAGGACTAGCAACCTATGAAGAAGATAAATGGGCCAAACATAGAAAAATTATCAATCCCGCTTTCCATCTAGAGAAGCTTAAGGTTGCTTTTCTTCCGCGCCCTCCTTCAAACTTTGTGATTGGTCAACTAGAAATTATTATGTTTGTACACGACGGATAAAATGCTGGCTCATGCTTCTTTAGCTACTGCTCTCTACAAGTCTTTCTATCCCCTTTAATTCGCTATCCTTATCTTTCTATCTAATGTTTTATGTATTCTGCATATGACTATTGCAATTAAATCCTGATATTTAACTTGAGTTAGACAAGTATAGAAGGGTCTTATGGTTCTTCAGTGTCAAATCTCGTCTGCATCAGCGTTCAATGTTCTAGTTTTTTCATCCACTAAACTATAAAAATGCTCACTCTTGCTTCTCTGGCTACATTTGTTGTGTAATGTCTTAGATATATTATGGATCTGTTTTTATTATAAAGAGATTTGTAATATTCCTGACCGTGTTTCGCCTTATTTGTTATTTGAACTCTGTTCTTTTTTATCGAACTAGATACTGACGGTATCACTATATCTGTATTAGCTAATTCTGTTTTAAGTGTTGTCTCGTTGACATTTGTCGAACAGCATATGCTCCCAGCTTTTCACTTGAGCTGTACTGAAATGCTGAGCAAATGGGAAGATGCTGTTCCACTTGGCAGCTCTCGTGAGATAGATGTATGGCCTCACCTTCAGCAATTAACTTGTGATGTAATCTCTCGGACAGCTTTTGGAAGTAGTTATGAAGAAGGTAGAAAGATTTTTGAACTTCAAACGGAACAAGCTCAGAATTTTATCGACGCTGTACGTGAAGTTTATA</genome_strand>
        <mrna_strand>CGAAAACCTATTTGTATCAAAAGCCCGGTGGAAATCCATTTGCAGCATTATTGGTACAAGGACTAGCAACCTATGAAGAAGATAAATGGGCCAAACATAGAAAAATTATCAATCCCGCTTTCCATCTAGAGAAGCTTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGCTCCCAGCTTTTCACTTGAGCTGTACTGAAATGCTGAGCAAATGGGAAGATGCTGTTCCACTTGGCAGCTCTCGTGAGATAGATGTATGGCCTCACCTTCAGCAATTAACTTGTGATGTAATCTCTCGGACAGCTTTTGGAAGTAGTTATGAAGAAGGTAGAAAGATTTTTGAACTTCAAACGGAACAAGCTCAGAATTTTATCGACGCTGTACGTGAAGTTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E316873" ref_strand="+" ref_description="SGN-E316873 [cTOA-27-E22]">
      <seq>aaaatggacgaaattcaaatattagtaagagtgtgttgttctgccatagcaattgctctgtttgtgtgtctgtggaaagtactaaattgggtttggctcaatccgaagaagttggagaatttgttgaggaaacaagggctaaatgggaactcttacaaaatattgtatggggatttgaatgattttattggaatgattagggaagctagttcaaaacctatgaatttgtctgatgatatagctccaagattggtgcctttctttcttgagaccaccaagaaatatgggaaaaaatgttttatatggttgggtccaaaaccacaagtaataatcatggaccctgagcttattaaggaagtactctcgaaaacctatttgtatcaaaagcccggtggaaatccatttgcagcattattggtacaaggactagcaacctatgaagaagataaatgggccaaacatagaaaaattatcaatcccgctttccatctagagaagcttaagcatatgctcccagcttttcacttgagctgtactgaaatgctgagcaaatgggaagatgctgttccacttggcagctctcgtgagatagatgtatggcctcaccttcagcaattaacttgtgatgtaatctctcggacagcttttggaagtagttatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="38374" stop="35605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38074" g_stop="37789" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37788" i_stop="36818" i_length="971">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.793" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36817" g_stop="36600" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="504" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36599" i_stop="36063" i_length="537">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36062" g_stop="35905" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="662" r_length="158" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E316873" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38074" e_stop="37789"/>
          <exon e_start="36817" e_stop="36600"/>
          <exon e_start="36062" e_stop="35905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGACGAAATTCAAATATTAGTAAGAGTGTGTTGTTCTGCCATAGCAATTGCTCTGTTTGTGTGTCTGTGGAAAGTACTAAATTGGGTTTGGCTCAATCCGAAGAAGTTGGAGAATTTGTTGAGGAAACAAGGGCTAAATGGGAACTCTTACAAAATATTGTATGGGGATTTGAATGATTTTATTGGAATGATTAGGGAAGCTAGTTCAAAACCTATGAATTTGTCTGATGATATAGCTCCAAGATTGGTGCCTTTCTTTCTTGAGACCACCAAGAAATATGGTACTCCTGTATACTTTGCTTATTACTCTAATTTCTCTAGACCGCACTCGTAGAGTTACACCGTATTTTAAATTTTTCGGTCAATCATAATTTGATACACGAGTAGGTAGAAGTTGTTATAGTAGGTCAAAGTCTATTTATATGGACTTGAACAATTCTCCTCTCATGAGCTAGCTTTAGGTTAAGTTAAGCCCAATGTTATATCTTTGCATGTTGTAGTATTAGAGTCAGGTTCATCCCCGTTTGAGCATCACACAACACTCTAGTTGGGCCTAGGCATGATAGGGGTGTTAGGATAGGTCAAAGTGCTATATTGGTTAGGGATTAGACTAGTGGTCTGCTTATATGGCTATGGCAATTCCTTTCTCATGAGCTAGCTTTTGGTTGAGTTAAGGCTAGTTGTAGTATCAGAGTCGGGTTCATCCCCGTTTGAGCATCGGTCTACACTATAGTTAGGCCTAGGCGTGATAGGGATGCAGGGGTGCACCCACAGAGGTTCAAGTGGGTTCATAAATAACACCATATATATATATATATATATGATCAGTTTTTAAAATTTTATATCTATATATTAACTTTTGACTCCACTAACACAAGTGTGACCCATGGCACAGTGGTGAAAAGGGCTTAATTTGCCCAGCCTGCCCGAGTTTGAATCCCTATTTCCCACATTTTAGATTTAGGATAGGTCAAAGTGTCATATCGGTTGGGGATTAGACTGGTGGTTTGCTTATATGGCTATGAGCTTTGATAATCCTTTTCTCATGAGCTAACTTTTACAGTTGAGTTAGACTCAGGTGTCGTATCTTTACAGAGGTCCTGGTTTGAGTATTACCGCCACACACCTATTATCGCAAGGATATACACATGTTTGGTTCTTAAAGTGAATCAAACAATGATTGTGATTAATGAAGCTGATTTAATTGAGAATGATTTGTACTAGTAGTTAATCCTAAGACATATGCTTGCAGGGAAAAAATGTTTTATATGGTTGGGTCCAAAACCACAAGTAATAATCATGGACCCTGAGCTTATTAAGGAAGTACTCTCGAAAACCTATTTGTATCAAAAGCCCGGTGGAAATCCATTTGCAGCATTATTGGTACAAGGACTAGCAACCTATGAAGAAGATAAATGGGCCAAACATAGAAAAATTATCAATCCCGCTTTCCATCTAGAGAAGCTTAAGGTTGCTTTTCTTCCGCGCCCTCCTTCAAACTTTGTGATTGGTCAACTAGAAATTATTATGTTTGTACACGACGGATAAAATGCTGGCTCATGCTTCTTTAGCTACTGCTCTCTACAAGTCTTTCTATCCCCTTTAATTCGCTATCCTTATCTTTCTATCTAATGTTTTATGTATTCTGCATATGACTATTGCAATTAAATCCTGATATTTAACTTGAGTTAGACAAGTATAGAAGGGTCTTATGGTTCTTCAGTGTCAAATCTCGTCTGCATCAGCGTTCAATGTTCTAGTTTTTTCATCCACTAAACTATAAAAATGCTCACTCTTGCTTCTCTGGCTACATTTGTTGTGTAATGTCTTAGATATATTATGGATCTGTTTTTATTATAAAGAGATTTGTAATATTCCTGACCGTGTTTCGCCTTATTTGTTATTTGAACTCTGTTCTTTTTTATCGAACTAGATACTGACGGTATCACTATATCTGTATTAGCTAATTCTGTTTTAAGTGTTGTCTCGTTGACATTTGTCGAACAGCATATGCTCCCAGCTTTTCACTTGAGCTGTACTGAAATGCTGAGCAAATGGGAAGATGCTGTTCCACTTGGCAGCTCTCGTGAGATAGATGTATGGCCTCACCTTCAGCAATTAACTTGTGATGTAATCTCTCGGACAGCTTTTGGAAGTAGTTATGA</genome_strand>
        <mrna_strand>AAAATGGACGAAATTCAAATATTAGTAAGAGTGTGTTGTTCTGCCATAGCAATTGCTCTGTTTGTGTGTCTGTGGAAAGTACTAAATTGGGTTTGGCTCAATCCGAAGAAGTTGGAGAATTTGTTGAGGAAACAAGGGCTAAATGGGAACTCTTACAAAATATTGTATGGGGATTTGAATGATTTTATTGGAATGATTAGGGAAGCTAGTTCAAAACCTATGAATTTGTCTGATGATATAGCTCCAAGATTGGTGCCTTTCTTTCTTGAGACCACCAAGAAATATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAAAATGTTTTATATGGTTGGGTCCAAAACCACAAGTAATAATCATGGACCCTGAGCTTATTAAGGAAGTACTCTCGAAAACCTATTTGTATCAAAAGCCCGGTGGAAATCCATTTGCAGCATTATTGGTACAAGGACTAGCAACCTATGAAGAAGATAAATGGGCCAAACATAGAAAAATTATCAATCCCGCTTTCCATCTAGAGAAGCTTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGCTCCCAGCTTTTCACTTGAGCTGTACTGAAATGCTGAGCAAATGGGAAGATGCTGTTCCACTTGGCAGCTCTCGTGAGATAGATGTATGGCCTCACCTTCAGCAATTAACTTGTGATGTAATCTCTCGGACAGCTTTTGGAAGTAGTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E316935" ref_strand="+" ref_description="SGN-E316935 [cTOA-27-J23]">
      <seq>atggacgaaattcaaatattagtaagagtgtgttgttctgccatagcaatttctctgtttgtgtgtctgtggaaagtactaaattgggtttggctcaatccgaagaagttggagaatttgttgaggaaacaagggctaaatgggaactcttacaaaatattgtatggggatttgaatgattttattggaatgattagggaagctagttcaaaacctatgaatttgtctgatgatatagctccaagattggtgcctttctttcttgagaccaccaagaaatatgggaaaaaatgttttatatggttgggtccaaaaccacaagtaataatcatggaccctgagcttattaaggaagtactctcgaaaacctatttgtatcaaaagcccggtggaaatccatttgcagcattattggtacaaggactagcaacctatgaagaagataaatgggccaaacatagaaaaattatcaatcccgctttccatctagagaagcttaagcatatgctcccagcttttcacttgagctgtactgaaatgctgagcaaatgggaagatgctgttccacttggcagctctcgtgagatagatgtatggcctcaccttcagcaattaacttgtgatgtaatctctcggacagcttttggaagtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="38371" stop="35611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38071" g_stop="37789" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37788" i_stop="36818" i_length="971">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.793" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36817" g_stop="36600" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="501" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36599" i_stop="36063" i_length="537">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36062" g_stop="35911" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="653" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E316935" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38071" e_stop="37789"/>
          <exon e_start="36817" e_stop="36600"/>
          <exon e_start="36062" e_stop="35911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGACGAAATTCAAATATTAGTAAGAGTGTGTTGTTCTGCCATAGCAATTGCTCTGTTTGTGTGTCTGTGGAAAGTACTAAATTGGGTTTGGCTCAATCCGAAGAAGTTGGAGAATTTGTTGAGGAAACAAGGGCTAAATGGGAACTCTTACAAAATATTGTATGGGGATTTGAATGATTTTATTGGAATGATTAGGGAAGCTAGTTCAAAACCTATGAATTTGTCTGATGATATAGCTCCAAGATTGGTGCCTTTCTTTCTTGAGACCACCAAGAAATATGGTACTCCTGTATACTTTGCTTATTACTCTAATTTCTCTAGACCGCACTCGTAGAGTTACACCGTATTTTAAATTTTTCGGTCAATCATAATTTGATACACGAGTAGGTAGAAGTTGTTATAGTAGGTCAAAGTCTATTTATATGGACTTGAACAATTCTCCTCTCATGAGCTAGCTTTAGGTTAAGTTAAGCCCAATGTTATATCTTTGCATGTTGTAGTATTAGAGTCAGGTTCATCCCCGTTTGAGCATCACACAACACTCTAGTTGGGCCTAGGCATGATAGGGGTGTTAGGATAGGTCAAAGTGCTATATTGGTTAGGGATTAGACTAGTGGTCTGCTTATATGGCTATGGCAATTCCTTTCTCATGAGCTAGCTTTTGGTTGAGTTAAGGCTAGTTGTAGTATCAGAGTCGGGTTCATCCCCGTTTGAGCATCGGTCTACACTATAGTTAGGCCTAGGCGTGATAGGGATGCAGGGGTGCACCCACAGAGGTTCAAGTGGGTTCATAAATAACACCATATATATATATATATATATGATCAGTTTTTAAAATTTTATATCTATATATTAACTTTTGACTCCACTAACACAAGTGTGACCCATGGCACAGTGGTGAAAAGGGCTTAATTTGCCCAGCCTGCCCGAGTTTGAATCCCTATTTCCCACATTTTAGATTTAGGATAGGTCAAAGTGTCATATCGGTTGGGGATTAGACTGGTGGTTTGCTTATATGGCTATGAGCTTTGATAATCCTTTTCTCATGAGCTAACTTTTACAGTTGAGTTAGACTCAGGTGTCGTATCTTTACAGAGGTCCTGGTTTGAGTATTACCGCCACACACCTATTATCGCAAGGATATACACATGTTTGGTTCTTAAAGTGAATCAAACAATGATTGTGATTAATGAAGCTGATTTAATTGAGAATGATTTGTACTAGTAGTTAATCCTAAGACATATGCTTGCAGGGAAAAAATGTTTTATATGGTTGGGTCCAAAACCACAAGTAATAATCATGGACCCTGAGCTTATTAAGGAAGTACTCTCGAAAACCTATTTGTATCAAAAGCCCGGTGGAAATCCATTTGCAGCATTATTGGTACAAGGACTAGCAACCTATGAAGAAGATAAATGGGCCAAACATAGAAAAATTATCAATCCCGCTTTCCATCTAGAGAAGCTTAAGGTTGCTTTTCTTCCGCGCCCTCCTTCAAACTTTGTGATTGGTCAACTAGAAATTATTATGTTTGTACACGACGGATAAAATGCTGGCTCATGCTTCTTTAGCTACTGCTCTCTACAAGTCTTTCTATCCCCTTTAATTCGCTATCCTTATCTTTCTATCTAATGTTTTATGTATTCTGCATATGACTATTGCAATTAAATCCTGATATTTAACTTGAGTTAGACAAGTATAGAAGGGTCTTATGGTTCTTCAGTGTCAAATCTCGTCTGCATCAGCGTTCAATGTTCTAGTTTTTTCATCCACTAAACTATAAAAATGCTCACTCTTGCTTCTCTGGCTACATTTGTTGTGTAATGTCTTAGATATATTATGGATCTGTTTTTATTATAAAGAGATTTGTAATATTCCTGACCGTGTTTCGCCTTATTTGTTATTTGAACTCTGTTCTTTTTTATCGAACTAGATACTGACGGTATCACTATATCTGTATTAGCTAATTCTGTTTTAAGTGTTGTCTCGTTGACATTTGTCGAACAGCATATGCTCCCAGCTTTTCACTTGAGCTGTACTGAAATGCTGAGCAAATGGGAAGATGCTGTTCCACTTGGCAGCTCTCGTGAGATAGATGTATGGCCTCACCTTCAGCAATTAACTTGTGATGTAATCTCTCGGACAGCTTTTGGAAGTAG</genome_strand>
        <mrna_strand>ATGGACGAAATTCAAATATTAGTAAGAGTGTGTTGTTCTGCCATAGCAATTTCTCTGTTTGTGTGTCTGTGGAAAGTACTAAATTGGGTTTGGCTCAATCCGAAGAAGTTGGAGAATTTGTTGAGGAAACAAGGGCTAAATGGGAACTCTTACAAAATATTGTATGGGGATTTGAATGATTTTATTGGAATGATTAGGGAAGCTAGTTCAAAACCTATGAATTTGTCTGATGATATAGCTCCAAGATTGGTGCCTTTCTTTCTTGAGACCACCAAGAAATATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAAAATGTTTTATATGGTTGGGTCCAAAACCACAAGTAATAATCATGGACCCTGAGCTTATTAAGGAAGTACTCTCGAAAACCTATTTGTATCAAAAGCCCGGTGGAAATCCATTTGCAGCATTATTGGTACAAGGACTAGCAACCTATGAAGAAGATAAATGGGCCAAACATAGAAAAATTATCAATCCCGCTTTCCATCTAGAGAAGCTTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGCTCCCAGCTTTTCACTTGAGCTGTACTGAAATGCTGAGCAAATGGGAAGATGCTGTTCCACTTGGCAGCTCTCGTGAGATAGATGTATGGCCTCACCTTCAGCAATTAACTTGTGATGTAATCTCTCGGACAGCTTTTGGAAGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E482210" ref_strand="+" ref_description="SGN-E482210 [cSTD-21-G16]">
      <seq>cgacatcgtttgttaattccgacagacatagaccatagtagatataaatagtgtaattcatagtggcacagaaattcaactcaaacaaaaatggacaaaattcaaatgattgtaacagtatgttgttctgccatagcaattgctctgtttgtgtgtctatggaaagtactaaattgggtttggttcaatccaaagaagttggagaatttgttgaggaaacaagggctaaatgggaattcttacaaaatattgtatggggatttgaatgattttattgggatgattagggaagctacttcaaagcctatgaatttgtctgatgaaatagctccaagattggtccctttctttcttgagaccatcaagaaatatgggaaaaaatgttttatatggctgggtccaaaaccacaagtaataatcatggaccctgagcttattaaggaagtactctcgaaaacctatttgtatcaaaagcctggtggaaatccatttgcagcattattggtacaaggactagcaacctatgaagaagataaatgggccaaacatcgaaaaattatcaatcccactttccatctagagaagcttaagcatatgctcccagcttttcacttgagctgtactgaaatgctgggcaaattagaagatgctattccagttggcagctctcatgagatagatgtatggcctcaccttcagcaattaacttgtgatgtaatctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="38394" stop="35631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38093" g_stop="37789" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="373" r_length="306" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37788" i_stop="36818" i_length="971">
            <donor d_prob="0.916" d_score="0.94"/>
            <acceptor a_prob="0.793" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36817" g_stop="36600" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="591" r_length="218" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36599" i_stop="36063" i_length="537">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.859" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36062" g_stop="35931" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="723" r_length="132" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E482210" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38093" e_stop="37789"/>
          <exon e_start="36817" e_stop="36600"/>
          <exon e_start="36062" e_stop="35931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAAATTCAACTCAAACAAAA-TGGACGAAATTCAAATATTAGTAAGAGTGTGTTGTTCTGCCATAGCAATTGCTCTGTTTGTGTGTCTGTGGAAAGTACTAAATTGGGTTTGGCTCAATCCGAAGAAGTTGGAGAATTTGTTGAGGAAACAAGGGCTAAATGGGAACTCTTACAAAATATTGTATGGGGATTTGAATGATTTTATTGGAATGATTAGGGAAGCTAGTTCAAAACCTATGAATTTGTCTGATGATATAGCTCCAAGATTGGTGCCTTTCTTTCTTGAGACCACCAAGAAATATGGTACTCCTGTATACTTTGCTTATTACTCTAATTTCTCTAGACCGCACTCGTAGAGTTACACCGTATTTTAAATTTTTCGGTCAATCATAATTTGATACACGAGTAGGTAGAAGTTGTTATAGTAGGTCAAAGTCTATTTATATGGACTTGAACAATTCTCCTCTCATGAGCTAGCTTTAGGTTAAGTTAAGCCCAATGTTATATCTTTGCATGTTGTAGTATTAGAGTCAGGTTCATCCCCGTTTGAGCATCACACAACACTCTAGTTGGGCCTAGGCATGATAGGGGTGTTAGGATAGGTCAAAGTGCTATATTGGTTAGGGATTAGACTAGTGGTCTGCTTATATGGCTATGGCAATTCCTTTCTCATGAGCTAGCTTTTGGTTGAGTTAAGGCTAGTTGTAGTATCAGAGTCGGGTTCATCCCCGTTTGAGCATCGGTCTACACTATAGTTAGGCCTAGGCGTGATAGGGATGCAGGGGTGCACCCACAGAGGTTCAAGTGGGTTCATAAATAACACCATATATATATATATATATATGATCAGTTTTTAAAATTTTATATCTATATATTAACTTTTGACTCCACTAACACAAGTGTGACCCATGGCACAGTGGTGAAAAGGGCTTAATTTGCCCAGCCTGCCCGAGTTTGAATCCCTATTTCCCACATTTTAGATTTAGGATAGGTCAAAGTGTCATATCGGTTGGGGATTAGACTGGTGGTTTGCTTATATGGCTATGAGCTTTGATAATCCTTTTCTCATGAGCTAACTTTTACAGTTGAGTTAGACTCAGGTGTCGTATCTTTACAGAGGTCCTGGTTTGAGTATTACCGCCACACACCTATTATCGCAAGGATATACACATGTTTGGTTCTTAAAGTGAATCAAACAATGATTGTGATTAATGAAGCTGATTTAATTGAGAATGATTTGTACTAGTAGTTAATCCTAAGACATATGCTTGCAGGGAAAAAATGTTTTATATGGTTGGGTCCAAAACCACAAGTAATAATCATGGACCCTGAGCTTATTAAGGAAGTACTCTCGAAAACCTATTTGTATCAAAAGCCCGGTGGAAATCCATTTGCAGCATTATTGGTACAAGGACTAGCAACCTATGAAGAAGATAAATGGGCCAAACATAGAAAAATTATCAATCCCGCTTTCCATCTAGAGAAGCTTAAGGTTGCTTTTCTTCCGCGCCCTCCTTCAAACTTTGTGATTGGTCAACTAGAAATTATTATGTTTGTACACGACGGATAAAATGCTGGCTCATGCTTCTTTAGCTACTGCTCTCTACAAGTCTTTCTATCCCCTTTAATTCGCTATCCTTATCTTTCTATCTAATGTTTTATGTATTCTGCATATGACTATTGCAATTAAATCCTGATATTTAACTTGAGTTAGACAAGTATAGAAGGGTCTTATGGTTCTTCAGTGTCAAATCTCGTCTGCATCAGCGTTCAATGTTCTAGTTTTTTCATCCACTAAACTATAAAAATGCTCACTCTTGCTTCTCTGGCTACATTTGTTGTGTAATGTCTTAGATATATTATGGATCTGTTTTTATTATAAAGAGATTTGTAATATTCCTGACCGTGTTTCGCCTTATTTGTTATTTGAACTCTGTTCTTTTTTATCGAACTAGATACTGACGGTATCACTATATCTGTATTAGCTAATTCTGTTTTAAGTGTTGTCTCGTTGACATTTGTCGAACAGCATATGCTCCCAGCTTTTCACTTGAGCTGTACTGAAATGCTGAGCAAATGGGAAGATGCTGTTCCACTTGGCAGCTCTCGTGAGATAGATGTATGGCCTCACCTTCAGCAATTAACTTGTGATGTAATCTCT</genome_strand>
        <mrna_strand>ACAGAAATTCAACTCAAACAAAAATGGACAAAATTCAAATGATTGTAACAGTATGTTGTTCTGCCATAGCAATTGCTCTGTTTGTGTGTCTATGGAAAGTACTAAATTGGGTTTGGTTCAATCCAAAGAAGTTGGAGAATTTGTTGAGGAAACAAGGGCTAAATGGGAATTCTTACAAAATATTGTATGGGGATTTGAATGATTTTATTGGGATGATTAGGGAAGCTACTTCAAAGCCTATGAATTTGTCTGATGAAATAGCTCCAAGATTGGTCCCTTTCTTTCTTGAGACCATCAAGAAATATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAAAATGTTTTATATGGCTGGGTCCAAAACCACAAGTAATAATCATGGACCCTGAGCTTATTAAGGAAGTACTCTCGAAAACCTATTTGTATCAAAAGCCTGGTGGAAATCCATTTGCAGCATTATTGGTACAAGGACTAGCAACCTATGAAGAAGATAAATGGGCCAAACATCGAAAAATTATCAATCCCACTTTCCATCTAGAGAAGCTTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGCTCCCAGCTTTTCACTTGAGCTGTACTGAAATGCTGGGCAAATTAGAAGATGCTATTCCAGTTGGCAGCTCTCATGAGATAGATGTATGGCCTCACCTTCAGCAATTAACTTGTGATGTAATCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E486183" ref_strand="+" ref_description="SGN-E486183 [cSTE-21-G16]">
      <seq>cgacatcgtttgttaattccgacagacatagaccatagtagatataaatagtgtaattcatagtggcacagaaattcaactcaaacaaaaatggacaaaattcaaatgattgtaacagtatgttgttctgccatagcaattgctctgtttgtgtgtctatggaaagtactaaattgggtttggttcaatccaaagaagttggagaatttgttgaggaaacaagggctaaatgggaattcttacaaaatattgtatggggatttgaatgattttattgggatgattagggaagctacttcaaagcctatgaatttgtctgatgaaatagctccaagattggtccctttctttcttgagaccatcaagaaatatgggaaaaaatgttttatatggctgggtccaaaaccacaagtaataatcatggaccctgagcttattaaggaagtactctcgaaaacctatttgtatcaaaagcctggtggaaatccatttgcagcattattggtacaaggactagcaacctatgaagaagataaatgggccaaacatcgaaaaatatcaatcccactttccatctagagaagcttaagcatatgctcccagcttttcacttgagctgtactgaaatgctgggcaaattagaagatgctattccagttggcagctctcatgagatagatgtatggcctcaccttcagcaattaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="38394" stop="35645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38093" g_stop="37789" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="373" r_length="306" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37788" i_stop="36818" i_length="971">
            <donor d_prob="0.916" d_score="0.94"/>
            <acceptor a_prob="0.793" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36817" g_stop="36600" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="590" r_length="217" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36599" i_stop="36063" i_length="537">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.859" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36062" g_stop="35945" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="708" r_length="118" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E486183" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38093" e_stop="37789"/>
          <exon e_start="36817" e_stop="36600"/>
          <exon e_start="36062" e_stop="35945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAAATTCAACTCAAACAAAA-TGGACGAAATTCAAATATTAGTAAGAGTGTGTTGTTCTGCCATAGCAATTGCTCTGTTTGTGTGTCTGTGGAAAGTACTAAATTGGGTTTGGCTCAATCCGAAGAAGTTGGAGAATTTGTTGAGGAAACAAGGGCTAAATGGGAACTCTTACAAAATATTGTATGGGGATTTGAATGATTTTATTGGAATGATTAGGGAAGCTAGTTCAAAACCTATGAATTTGTCTGATGATATAGCTCCAAGATTGGTGCCTTTCTTTCTTGAGACCACCAAGAAATATGGTACTCCTGTATACTTTGCTTATTACTCTAATTTCTCTAGACCGCACTCGTAGAGTTACACCGTATTTTAAATTTTTCGGTCAATCATAATTTGATACACGAGTAGGTAGAAGTTGTTATAGTAGGTCAAAGTCTATTTATATGGACTTGAACAATTCTCCTCTCATGAGCTAGCTTTAGGTTAAGTTAAGCCCAATGTTATATCTTTGCATGTTGTAGTATTAGAGTCAGGTTCATCCCCGTTTGAGCATCACACAACACTCTAGTTGGGCCTAGGCATGATAGGGGTGTTAGGATAGGTCAAAGTGCTATATTGGTTAGGGATTAGACTAGTGGTCTGCTTATATGGCTATGGCAATTCCTTTCTCATGAGCTAGCTTTTGGTTGAGTTAAGGCTAGTTGTAGTATCAGAGTCGGGTTCATCCCCGTTTGAGCATCGGTCTACACTATAGTTAGGCCTAGGCGTGATAGGGATGCAGGGGTGCACCCACAGAGGTTCAAGTGGGTTCATAAATAACACCATATATATATATATATATATGATCAGTTTTTAAAATTTTATATCTATATATTAACTTTTGACTCCACTAACACAAGTGTGACCCATGGCACAGTGGTGAAAAGGGCTTAATTTGCCCAGCCTGCCCGAGTTTGAATCCCTATTTCCCACATTTTAGATTTAGGATAGGTCAAAGTGTCATATCGGTTGGGGATTAGACTGGTGGTTTGCTTATATGGCTATGAGCTTTGATAATCCTTTTCTCATGAGCTAACTTTTACAGTTGAGTTAGACTCAGGTGTCGTATCTTTACAGAGGTCCTGGTTTGAGTATTACCGCCACACACCTATTATCGCAAGGATATACACATGTTTGGTTCTTAAAGTGAATCAAACAATGATTGTGATTAATGAAGCTGATTTAATTGAGAATGATTTGTACTAGTAGTTAATCCTAAGACATATGCTTGCAGGGAAAAAATGTTTTATATGGTTGGGTCCAAAACCACAAGTAATAATCATGGACCCTGAGCTTATTAAGGAAGTACTCTCGAAAACCTATTTGTATCAAAAGCCCGGTGGAAATCCATTTGCAGCATTATTGGTACAAGGACTAGCAACCTATGAAGAAGATAAATGGGCCAAACATAGAAAAATTATCAATCCCGCTTTCCATCTAGAGAAGCTTAAGGTTGCTTTTCTTCCGCGCCCTCCTTCAAACTTTGTGATTGGTCAACTAGAAATTATTATGTTTGTACACGACGGATAAAATGCTGGCTCATGCTTCTTTAGCTACTGCTCTCTACAAGTCTTTCTATCCCCTTTAATTCGCTATCCTTATCTTTCTATCTAATGTTTTATGTATTCTGCATATGACTATTGCAATTAAATCCTGATATTTAACTTGAGTTAGACAAGTATAGAAGGGTCTTATGGTTCTTCAGTGTCAAATCTCGTCTGCATCAGCGTTCAATGTTCTAGTTTTTTCATCCACTAAACTATAAAAATGCTCACTCTTGCTTCTCTGGCTACATTTGTTGTGTAATGTCTTAGATATATTATGGATCTGTTTTTATTATAAAGAGATTTGTAATATTCCTGACCGTGTTTCGCCTTATTTGTTATTTGAACTCTGTTCTTTTTTATCGAACTAGATACTGACGGTATCACTATATCTGTATTAGCTAATTCTGTTTTAAGTGTTGTCTCGTTGACATTTGTCGAACAGCATATGCTCCCAGCTTTTCACTTGAGCTGTACTGAAATGCTGAGCAAATGGGAAGATGCTGTTCCACTTGGCAGCTCTCGTGAGATAGATGTATGGCCTCACCTTCAGCAATTAACTT</genome_strand>
        <mrna_strand>ACAGAAATTCAACTCAAACAAAAATGGACAAAATTCAAATGATTGTAACAGTATGTTGTTCTGCCATAGCAATTGCTCTGTTTGTGTGTCTATGGAAAGTACTAAATTGGGTTTGGTTCAATCCAAAGAAGTTGGAGAATTTGTTGAGGAAACAAGGGCTAAATGGGAATTCTTACAAAATATTGTATGGGGATTTGAATGATTTTATTGGGATGATTAGGGAAGCTACTTCAAAGCCTATGAATTTGTCTGATGAAATAGCTCCAAGATTGGTCCCTTTCTTTCTTGAGACCATCAAGAAATATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAAAATGTTTTATATGGCTGGGTCCAAAACCACAAGTAATAATCATGGACCCTGAGCTTATTAAGGAAGTACTCTCGAAAACCTATTTGTATCAAAAGCCTGGTGGAAATCCATTTGCAGCATTATTGGTACAAGGACTAGCAACCTATGAAGAAGATAAATGGGCCAAACATCGAAAAA-TATCAATCCCACTTTCCATCTAGAGAAGCTTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGCTCCCAGCTTTTCACTTGAGCTGTACTGAAATGCTGGGCAAATTAGAAGATGCTATTCCAGTTGGCAGCTCTCATGAGATAGATGTATGGCCTCACCTTCAGCAATTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E426132" ref_strand="+" ref_description="SGN-E426132 [STM-46-G23]">
      <seq>attcaaatgattgtaacagtatgttgttctgccatagcaattgctctgtttgtgtgtctatggaaagtactaaattgggtttggttcaatccaaagaagttggagaatttgttgaggaaacaagggctaaatgggaattcttacaaaatattgtatggggatttgaatgattttattgggatgattagggaagctacttcaaagcctatgaatttgtctgatgaaatagctccaagattggtccctttctttcttgagaccatcaagaaatatgggaaaaaatgttttatatggctgggtccaaaaccacaagtaataatcatggaccctgagcttattaaggaagtactctcgaaaacctatttgtatcaaaagcctggtggaaatccatttgcagcattattggtacaaggactagcaacctatgaagaagataaatgggccaaacatcgaaaaattatcaatcccactttccatctagagaagcttaaggttgcttttcttccgcgccctccttcaaaatttgtgattggtcaaccagaaattattatgttcggacacgatggataaaatattgggctcttgctttcttggctactgctccctctaagtctttctatcccctttgatgtgctatccttatctttncatcgaatatttttctgtattctgcatatgactattgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="38362" stop="36106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38062" g_stop="37789" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37788" i_stop="36818" i_length="971">
            <donor d_prob="0.916" d_score="0.94"/>
            <acceptor a_prob="0.793" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36817" g_stop="36406" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="688" r_length="414" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E426132" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38062" e_stop="37789"/>
          <exon e_start="36817" e_stop="36406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAAATATTAGTAAGAGTGTGTTGTTCTGCCATAGCAATTGCTCTGTTTGTGTGTCTGTGGAAAGTACTAAATTGGGTTTGGCTCAATCCGAAGAAGTTGGAGAATTTGTTGAGGAAACAAGGGCTAAATGGGAACTCTTACAAAATATTGTATGGGGATTTGAATGATTTTATTGGAATGATTAGGGAAGCTAGTTCAAAACCTATGAATTTGTCTGATGATATAGCTCCAAGATTGGTGCCTTTCTTTCTTGAGACCACCAAGAAATATGGTACTCCTGTATACTTTGCTTATTACTCTAATTTCTCTAGACCGCACTCGTAGAGTTACACCGTATTTTAAATTTTTCGGTCAATCATAATTTGATACACGAGTAGGTAGAAGTTGTTATAGTAGGTCAAAGTCTATTTATATGGACTTGAACAATTCTCCTCTCATGAGCTAGCTTTAGGTTAAGTTAAGCCCAATGTTATATCTTTGCATGTTGTAGTATTAGAGTCAGGTTCATCCCCGTTTGAGCATCACACAACACTCTAGTTGGGCCTAGGCATGATAGGGGTGTTAGGATAGGTCAAAGTGCTATATTGGTTAGGGATTAGACTAGTGGTCTGCTTATATGGCTATGGCAATTCCTTTCTCATGAGCTAGCTTTTGGTTGAGTTAAGGCTAGTTGTAGTATCAGAGTCGGGTTCATCCCCGTTTGAGCATCGGTCTACACTATAGTTAGGCCTAGGCGTGATAGGGATGCAGGGGTGCACCCACAGAGGTTCAAGTGGGTTCATAAATAACACCATATATATATATATATATATGATCAGTTTTTAAAATTTTATATCTATATATTAACTTTTGACTCCACTAACACAAGTGTGACCCATGGCACAGTGGTGAAAAGGGCTTAATTTGCCCAGCCTGCCCGAGTTTGAATCCCTATTTCCCACATTTTAGATTTAGGATAGGTCAAAGTGTCATATCGGTTGGGGATTAGACTGGTGGTTTGCTTATATGGCTATGAGCTTTGATAATCCTTTTCTCATGAGCTAACTTTTACAGTTGAGTTAGACTCAGGTGTCGTATCTTTACAGAGGTCCTGGTTTGAGTATTACCGCCACACACCTATTATCGCAAGGATATACACATGTTTGGTTCTTAAAGTGAATCAAACAATGATTGTGATTAATGAAGCTGATTTAATTGAGAATGATTTGTACTAGTAGTTAATCCTAAGACATATGCTTGCAGGGAAAAAATGTTTTATATGGTTGGGTCCAAAACCACAAGTAATAATCATGGACCCTGAGCTTATTAAGGAAGTACTCTCGAAAACCTATTTGTATCAAAAGCCCGGTGGAAATCCATTTGCAGCATTATTGGTACAAGGACTAGCAACCTATGAAGAAGATAAATGGGCCAAACATAGAAAAATTATCAATCCCGCTTTCCATCTAGAGAAGCTTAAGGTTGCTTTTCTTCCGCGCCCTCCTTCAAACTTTGTGATTGGTCAACTAGAAATTATTATGTTTGTACACGACGGATAAAATGCT-GGCTCATGCTTCTTTAGCTACTGCTCTCTACAAGTCTTTCTATCCCCTTTAATTCGCTATCCTTATCTTTCTATCTAAT-GTTTTATGTATTCTGCATATGACTATTGCAA</genome_strand>
        <mrna_strand>ATTCAAATGATTGTAACAGTATGTTGTTCTGCCATAGCAATTGCTCTGTTTGTGTGTCTATGGAAAGTACTAAATTGGGTTTGGTTCAATCCAAAGAAGTTGGAGAATTTGTTGAGGAAACAAGGGCTAAATGGGAATTCTTACAAAATATTGTATGGGGATTTGAATGATTTTATTGGGATGATTAGGGAAGCTACTTCAAAGCCTATGAATTTGTCTGATGAAATAGCTCCAAGATTGGTCCCTTTCTTTCTTGAGACCATCAAGAAATATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAAAATGTTTTATATGGCTGGGTCCAAAACCACAAGTAATAATCATGGACCCTGAGCTTATTAAGGAAGTACTCTCGAAAACCTATTTGTATCAAAAGCCTGGTGGAAATCCATTTGCAGCATTATTGGTACAAGGACTAGCAACCTATGAAGAAGATAAATGGGCCAAACATCGAAAAATTATCAATCCCACTTTCCATCTAGAGAAGCTTAAGGTTGCTTTTCTTCCGCGCCCTCCTTCAAAATTTGTGATTGGTCAACCAGAAATTATTATGTTCGGACACGATGGATAAAATATTGGGCTCTTGCTTTCTTGGCTACTGCTCCCTCTAAGTCTTTCTATCCCCTTTGATGTGCTATCCTTATCTTTNCATCGAATATTTTTCTGTATTCTGCATATGACTATTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E456151" ref_strand="+" ref_description="SGN-E456151 [cSTS-28-N19]">
      <seq>ttcaaagcctattgaatttgtctgatgaaatagctccaagattggtccctttctttcttgagaccatcaagaaatatgggaaaaaaatgttttatatggctgggtccaaaaccacaagtaataatcatggaccctgagcttattaaggaagtactctcgaaaacctatttgtatcaaaagcctggtggaaatccatttgcagcattattggtacaaggactagcaacctatgaagaagataaatgggccaaacatcgaaaaattatcaatcccactttccatctagagaagcttaaggttgcttttcttccgcgccctccttcaaaatttgtgattggtcaaccagaaattattatgttcggacacgatggataaaatattgggctcttgcttctttggctactgctccctctaagtctttctatccccttttgatgtgctatccttatctttcaatcgaatattttttctgtattctgcatatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="38165" stop="36113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37865" g_stop="37789" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37788" i_stop="36818" i_length="971">
            <donor d_prob="0.916" d_score="0.94"/>
            <acceptor a_prob="0.793" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36817" g_stop="36413" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="488" r_length="410" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E456151" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37865" e_stop="37789"/>
          <exon e_start="36817" e_stop="36413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAACCTAT-GAATTTGTCTGATGATATAGCTCCAAGATTGGTGCCTTTCTTTCTTGAGACCACCAAGAAATATGGTACTCCTGTATACTTTGCTTATTACTCTAATTTCTCTAGACCGCACTCGTAGAGTTACACCGTATTTTAAATTTTTCGGTCAATCATAATTTGATACACGAGTAGGTAGAAGTTGTTATAGTAGGTCAAAGTCTATTTATATGGACTTGAACAATTCTCCTCTCATGAGCTAGCTTTAGGTTAAGTTAAGCCCAATGTTATATCTTTGCATGTTGTAGTATTAGAGTCAGGTTCATCCCCGTTTGAGCATCACACAACACTCTAGTTGGGCCTAGGCATGATAGGGGTGTTAGGATAGGTCAAAGTGCTATATTGGTTAGGGATTAGACTAGTGGTCTGCTTATATGGCTATGGCAATTCCTTTCTCATGAGCTAGCTTTTGGTTGAGTTAAGGCTAGTTGTAGTATCAGAGTCGGGTTCATCCCCGTTTGAGCATCGGTCTACACTATAGTTAGGCCTAGGCGTGATAGGGATGCAGGGGTGCACCCACAGAGGTTCAAGTGGGTTCATAAATAACACCATATATATATATATATATATGATCAGTTTTTAAAATTTTATATCTATATATTAACTTTTGACTCCACTAACACAAGTGTGACCCATGGCACAGTGGTGAAAAGGGCTTAATTTGCCCAGCCTGCCCGAGTTTGAATCCCTATTTCCCACATTTTAGATTTAGGATAGGTCAAAGTGTCATATCGGTTGGGGATTAGACTGGTGGTTTGCTTATATGGCTATGAGCTTTGATAATCCTTTTCTCATGAGCTAACTTTTACAGTTGAGTTAGACTCAGGTGTCGTATCTTTACAGAGGTCCTGGTTTGAGTATTACCGCCACACACCTATTATCGCAAGGATATACACATGTTTGGTTCTTAAAGTGAATCAAACAATGATTGTGATTAATGAAGCTGATTTAATTGAGAATGATTTGTACTAGTAGTTAATCCTAAGACATATGCTTGCAGGG-AAAAAATGTTTTATATGGTTGGGTCCAAAACCACAAGTAATAATCATGGACCCTGAGCTTATTAAGGAAGTACTCTCGAAAACCTATTTGTATCAAAAGCCCGGTGGAAATCCATTTGCAGCATTATTGGTACAAGGACTAGCAACCTATGAAGAAGATAAATGGGCCAAACATAGAAAAATTATCAATCCCGCTTTCCATCTAGAGAAGCTTAAGGTTGCTTTTCTTCCGCGCCCTCCTTCAAACTTTGTGATTGGTCAACTAGAAATTATTATGTTTGTACACGACGGATAAAATGCT-GGCTCATGCTTCTTTAGCTACTGCTCTCTACAAGTCTTTCTATCCCC-TTTAATTCGCTATCCTTATCTTTCTATC-TA-ATGTTTTATGTATTCTGCATATGACT</genome_strand>
        <mrna_strand>TTCAAAGCCTATTGAATTTGTCTGATGAAATAGCTCCAAGATTGGTCCCTTTCTTTCTTGAGACCATCAAGAAATATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAAAAATGTTTTATATGGCTGGGTCCAAAACCACAAGTAATAATCATGGACCCTGAGCTTATTAAGGAAGTACTCTCGAAAACCTATTTGTATCAAAAGCCTGGTGGAAATCCATTTGCAGCATTATTGGTACAAGGACTAGCAACCTATGAAGAAGATAAATGGGCCAAACATCGAAAAATTATCAATCCCACTTTCCATCTAGAGAAGCTTAAGGTTGCTTTTCTTCCGCGCCCTCCTTCAAAATTTGTGATTGGTCAACCAGAAATTATTATGTTCGGACACGATGGATAAAATATTGGGCTCTTGCTTCTTTGGCTACTGCTCCCTCTAAGTCTTTCTATCCCCTTTTGATGTGCTATCCTTATCTTTCAATCGAATATTTTTTCTGTATTCTGCATATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E545933" ref_strand="-" ref_description="SGN-E545933 [TUS-69-A15]">
      <seq>tgaagcagggtgatgccaataataatgaggatctgttaggcatatgncttgagtcaaattttaaagaaattgaacagcacggaaacaaggattttggaatgagcatcgaagaagtcatcgaagaatgcaagttattctattttgctggccaagaagctacatcagtcttactcgtgtggactctggtgttgttgagcagacatccagattggcagaaacgggccagagaagaagtcttgcaagtgtttgggagtcgaaaaccagattttgatgggttaactaatcatctaaaagttgtgacgatgatcttgtacgagtcactaaggctatattccccatcaataacacaaatgcgacaggcgagtgaagacatagtattaggagaagtatctctaccagctggtgtgctagtctcattgccaataatcttattgcatcatgataaagatatatggggtgaagatgcaaccaagttcaatccagagagatttagtgaaggaatatcaagtgcaacaaagggtcaagttgcatattttccatttgcttggggtccaagaatatgcattggacaaaattttgccatattagaagcaaaaatgactctctgtatgatcctacaaagcttctcttttgaattgtctccatcctacacacatgctcctcaacccatatttaccattcagcctcagtatggtgctccacttattttccacaaactataatttcatattacgtgaggtatcttcagacctcatttgtataactatattagatatgttattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="39944" stop="38293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39665" g_stop="39373" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39372" i_stop="39045" i_length="328">
            <donor d_prob="0.807" d_score="0.83"/>
            <acceptor a_prob="0.979" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39044" g_stop="38603" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="738" r_length="442" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E545933" ref_strand="-">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545933" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39665" e_stop="39373"/>
          <exon e_start="39044" e_stop="38603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGCAGGTCATGATGCCGATAATGAGGATCTGTTAGGCGTATTGCTTGAATCAAATTTCAAAGAAATTGAACAGCACGGAAACAAGGATTTTGGAATGAGCATCGAAGAAGTCATCGAAGAATGCAAGTTATTCTATTTTGCTGGCCAAGAAACTATAGCAGTCTTACTCGTGTGGACTCTGGTGTTGTTAAGTAGGTATCAAGATTGGCAGACACAGGCCAGAGAAGAAGTCTTGCAAGTGTTTGGGAGTCGGAAACCAGATTTTGATGGATT-A--AATCATCTAAAAGTTGTGAGTATTCTGTTTTTTTTAATTCTTGGTTTAGTTCATGTGCCATGAGTTCCTTCTCTCATTGTTATTGCTATTGCTTGAGAGCTTTGTGATACTAATGTTTCATTGTCCACGCACCAGATTCTAAGCACTGGGCGTGAGGTGGGGTGTTAAAAGATGGAGCAGATTCCTTATAAAGCTTGGTCAATCCTCCTCTCTTTGAGCTAGCTTTTGCGGTGTGAGTTAGACCTAAGACCTAATTTCACAATTACAACTTGTAACTTACAAGCTAACGATGATCTTGTACGAGTCATTAGATATAACTGAAGAAGAAGCCTTTTTTTTGCAGGTAACGATGATCTTGTACGAGTCACTAAGGCTATATTCCCCATTATTTACACATAACAGACAGGCAAGTGAAGACACAGTATTAGTAGAATTGTGTCTACCAGCTGATGTGCTAGTTTCATTGCCCACGATCATATTGCATCATGACAAAGATATATGGGGTGAAGACGCAAACAAGTTCAATCCAGAGAGATTTAGAGAAGGAATATCAAGTGCAACAATGGGTAAAGTTACATATTTTCCATTTTCATGGGGTCCAAGAATATGCATTGGACAAAATTTTGCAATGTTAGAGGCAAAGATGACTCTCTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCGCCTCAACCCCTACTTACCATTCATCCTCAGTATGGTGCTCCTCTTATTTTCCACAAACTATAATTTCATATTACGTGAG</genome_strand>
        <mrna_strand>TGAAGCAGGGTGATGCCAATAATAATGAGGATCTGTTAGGCATATGNCTTGAGTCAAATTTTAAAGAAATTGAACAGCACGGAAACAAGGATTTTGGAATGAGCATCGAAGAAGTCATCGAAGAATGCAAGTTATTCTATTTTGCTGGCCAAGAAGCTACATCAGTCTTACTCGTGTGGACTCTGGTGTTGTTGAGCAGACATCCAGATTGGCAGAAACGGGCCAGAGAAGAAGTCTTGCAAGTGTTTGGGAGTCGAAAACCAGATTTTGATGGGTTAACTAATCATCTAAAAGTT........................................................................................................................................................................................................................................................................................................................................GTGACGATGATCTTGTACGAGTCACTAAGGCTATATTCCCCATCAATAACACAAATGCGACAGGCGAGTGAAGACATAGTATTAGGAGAAGTATCTCTACCAGCTGGTGTGCTAGTCTCATTGCCAATAATCTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCAACAAAGGGTCAAGTTGCATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAGAAGCAAAAATGACTCTCTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCTCCTCAACCCATATTTACCATTCAGCCTCAGTATGGTGCTCCACTTATTTTCCACAAACTATAATTTCATATTACGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E546138" ref_strand="+" ref_description="SGN-E546138 [TUS-69-F14]">
      <seq>aaaaaattcaaatattagttacagcatgttgttgtgccataacaattactctgtttgtttgtttatggaaagtactgaattgggtttggttcagtccaaagaagttggagaaattgttgaggaaacaagggctaaatgggaattcatacagattattgtatggagacatgaaagatttttctaagatgattaaagaagctaattcaaagcccatgaatttgtctgatgatataactccaagattggtgcctttctttcttgaaaccatcaagaaatatgggaaaaaatcttttatatggttgggtccaaaaccacatgtactaatcatggacccggagcttataaaggaagtattctcgaaaaactatttgtatcaaaagcctcatggaaatccatttgcagcattatttgtacaaggactaccagcctatgaggaagacaaatgggccaaacatagaaaaattatcgatcccgctttccatctagagaagctaaagcatatgcttccagcatttcacttgagctgcaatgagatgttgagcaaatgggaagacgttgttccagttgaaggctctcgtgagatagatgtatggcctcaccttcagcaattaacttgcgatgtaatatctcgtacagcttttggtagtagttacgaagatggtagaaagatttttgaactcaaaggggaacagctcagcattttatcgacactgtacactcagtttatatccccaggatggagatttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="42162" stop="39704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41874" g_stop="41597" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41596" i_stop="40808" i_length="789">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.428" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40590" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="497" r_length="218" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40589" i_stop="40245" i_length="345">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.164" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40244" g_stop="40006" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="742" r_length="245" r_score="0.866"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40005" i_stop="39761" i_length="245">
            <donor d_prob="0.984" d_score="0.90"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39760" g_stop="39753" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="750" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E546138" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41874" e_stop="41597"/>
          <exon e_start="40807" e_stop="40590"/>
          <exon e_start="40244" e_stop="40006"/>
          <exon e_start="39760" e_stop="39753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAAATGGA-ATTAGTTACAGCATGTTGTTGTGCCATAACAATTACTCTGTTTGTTTGTTTATGGAAAGTACTGAATTGGGTTTGGTTCAGACCAAAGAAGTTGGAGAAATTGTTGAGGAAACAAGGGCTAAATGGGAATTCATACAGATTATTGTATGGAGACATGAAAGATTTTTCTAAGATGATTAAAGAAGCTAATTCAAAGCCCATGAATTTGTCTAATGATATAACTCCAAGATTGGTACCTTTCTTTCTTGAAACCATCAAGAAATATGGTATGTACTTTATTTTTTGTTTATTTCGAGAATGATTTGTCATGCTTTACTTAGTATCTGCTTTGATATATTTTTCCTTTTAAGTCAGACGTGTTTATCAGAAACAATGTCTCTACCCAAGGTATGGTAAGGTCGGCATATGCTCTCCTCGAGACTCTACTAGTAGGATTACACAAAATCTGTTAAAAGAAAAATAAGTCCCTTAATTTTAGGTATTTTTGAGAAGACTGAAGTTCTTATAAGAAAACGTTAGATCATGCTCTAAAGTTTTGTACGTTGATGCAGGCGTTATAAGTAAATTTTATGTTTTGTCGGTAAGATTAGGTAATTTATAAGCAAAAGATGTATGAAGTGTACATAAAGATGCTTCTTAGGTAGAGGAGGGGATGAATTTGTTCGAGAGTTGAAGATATGTTTAAGTAAATAAAAATTGTGCTTTATTTGATACCTTAAACTTTTAGATGAGTTGATTACTCACAACATGATGTACGAGTAGATAGAGGTAGTTAGAAGTGTCCAGTGGGTCAAAGTCCCACATTAGTTGGAGAATGAACTGGTGGTCTGCTTATATGAACTTGAGTAATCTTCATCTCATGAACTAGCTTTTTCGGTTGAGTCAGACTCCAATATTATACTGGGGTCTTGGATTGAGTCTGACGGCCAAACATCTCTATTATCAAGAAGAACAAACAATGATTGTGATTACTGAAGCTGATTTAATTGAGGATGATGATATAAGCTAAACATAATCCAAATTAAACGCGTTCTTAGTTATACATATGCTTGCAGGGAAAAAGTCTTTTATTTGGTTGTGTCCAAAACCACAAGTACTAATCATGGATCCGGAGCTTATAAAGGAAGTATTCTCGAAAAATTATTTTTATCAAAAGCCTCATGGAAATCCATTTGCAGCGTTATTGGTACAAGGACTAGCAGCCTATGAGGAAGACAAATGGGCCAAACATAGAAAAATTATCAATCCCGCTTTCCATCTAGAGAAGCTAAAGGTTTGTCAGACGTTTCTTCGTTTTTCCTCCTTTAACGTATGACTATTTCTAGTAAATTCATCATTTGTCAAGACTCTTCTACAGTTCTATGTAAGTTCATAGGCTTGGACGGGGCATTTAGTCTATGTAAGTTGATAATGTCTTAGATATATTACCGTAAAATGAATCTTTTTTATATTAAAGAGATTTGTAATATTGCTGAACGTGTTTCACCTTAATTGTTGTTTGAACGCTCTTTCTTTTTATTAAACTAGATGGTGATGGTATCACTATATCTGTATTCCTAATTCTGTTTCAAGTGTTGTGTCATCGTTATATGTTCCCTTACATCATTTTCTCGAACAGCATATGCTTCCAGCTTTTCACTTGAGTTGTAGTGAGATGTTGAGTAAATGGGAAGAC---G---CTGTTGAAGGCTCTTGTGAGATAGATGTATGGCCTCACCTTCAGCAATTAACTTGTGATGTGATCTCTCGTACAGCTTTTGGTAGTAGTTACGAAGAAGGTAGAAAGATTTTTGAACTTCAAAGGGAACAAGCTCAGCATTTTATCGACACTGTACGCTCAGTTAATAT-CCCAAGATGGAGGTAAATTAATTTGCCTGAGAATCGAAAAATTGTAGCCAAAGCTATGTTGTTCGGACTCTTAAAAATGATGATGGTTGCATGTTGGATCTTCCAAATATTAGTGCATTTCTATAGAATCCGACATGGTTGCAGGAACTATTTTGGAGAGTCCGAACAACATAGAACCAAAGTTCATCAGGAGATGCACATAGCTTTTACTTCATCTAATGCATTTTGGTTTTCTGTCTTATAATATAATTTCAAAGATTTTTGC</genome_strand>
        <mrna_strand>AAAAAATTCAAATATTAGTTACAGCATGTTGTTGTGCCATAACAATTACTCTGTTTGTTTGTTTATGGAAAGTACTGAATTGGGTTTGGTTCAGTCCAAAGAAGTTGGAGAAATTGTTGAGGAAACAAGGGCTAAATGGGAATTCATACAGATTATTGTATGGAGACATGAAAGATTTTTCTAAGATGATTAAAGAAGCTAATTCAAAGCCCATGAATTTGTCTGATGATATAACTCCAAGATTGGTGCCTTTCTTTCTTGAAACCATCAAGAAATATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAAAATCTTTTATATGGTTGGGTCCAAAACCACATGTACTAATCATGGACCCGGAGCTTATAAAGGAAGTATTCTCGAAAAACTATTTGTATCAAAAGCCTCATGGAAATCCATTTGCAGCATTATTTGTACAAGGACTACCAGCCTATGAGGAAGACAAATGGGCCAAACATAGAAAAATTATCGATCCCGCTTTCCATCTAGAGAAGCTAAAG.........................................................................................................................................................................................................................................................................................................................................................CATATGCTTCCAGCATTTCACTTGAGCTGCAATGAGATGTTGAGCAAATGGGAAGACGTTGTTCCAGTTGAAGGCTCTCGTGAGATAGATGTATGGCCTCACCTTCAGCAATTAACTTGCGATGTAATATCTCGTACAGCTTTTGGTAGTAGTTACGAAGATGGTAGAAAGATTTTTGAAC-TCAAAGGGGAACAGCTCAGCATTTTATCGACACTGTACACTCAGTTTATATCCCCAGGATGGAG.....................................................................................................................................................................................................................................................ATTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E545974" ref_strand="+" ref_description="SGN-E545974 [TUS-69-B15]">
      <seq>aatattagttacagcatgttgttgtgccataacaattactctgtttgtttgtttatggaaagtactgaattgggtttggttcagtccaaagaagttggagaaattgttgaggaaacaagggctaaatgggaattcatacagattattgtatggagacatgaaagatttttctaagatgattaaagaagctaattcaaagcccatgaatttgtctgatgatataactccaagattggtgcctttctttcttgaaaccatcaagaaatatgggaaaaaatcttttatatggttgggtccaaaaccacatgtactaatcatggacccggagcttataaaggaagtattctcgaaaaactatttgtatcaaaagcctcatggaaatccatttgcagcattatttgtacaaggactaccagcctatgaggaagacaaatgggccaaacatagaaaaattatcgatcccgctttccatctagagaagctaaagcatatgcttccagcatttcacttgagctgcaatgagatgttgagcaaatgggaagacgttgttccagttgaaggctctcgtgagatagatgtatggcctcaccttcagcaattaacttgcgatgtaatatctcgtacagcttttggtagtagttatgaagatggtagaaagatttttgaacttcaaagggaacaagctcagcattttatcgacactgtacactcagtttatatcccaggatggagatttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="42162" stop="39704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41865" g_stop="41597" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41596" i_stop="40808" i_length="789">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.428" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40590" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="487" r_length="218" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40589" i_stop="40245" i_length="345">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.164" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40244" g_stop="40006" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="732" r_length="245" r_score="0.887"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40005" i_stop="39761" i_length="245">
            <donor d_prob="0.984" d_score="0.94"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39760" g_stop="39753" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="733" r_stop="740" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E545974" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41865" e_stop="41597"/>
          <exon e_start="40807" e_stop="40590"/>
          <exon e_start="40244" e_stop="40006"/>
          <exon e_start="39760" e_stop="39753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTAGTTACAGCATGTTGTTGTGCCATAACAATTACTCTGTTTGTTTGTTTATGGAAAGTACTGAATTGGGTTTGGTTCAGACCAAAGAAGTTGGAGAAATTGTTGAGGAAACAAGGGCTAAATGGGAATTCATACAGATTATTGTATGGAGACATGAAAGATTTTTCTAAGATGATTAAAGAAGCTAATTCAAAGCCCATGAATTTGTCTAATGATATAACTCCAAGATTGGTACCTTTCTTTCTTGAAACCATCAAGAAATATGGTATGTACTTTATTTTTTGTTTATTTCGAGAATGATTTGTCATGCTTTACTTAGTATCTGCTTTGATATATTTTTCCTTTTAAGTCAGACGTGTTTATCAGAAACAATGTCTCTACCCAAGGTATGGTAAGGTCGGCATATGCTCTCCTCGAGACTCTACTAGTAGGATTACACAAAATCTGTTAAAAGAAAAATAAGTCCCTTAATTTTAGGTATTTTTGAGAAGACTGAAGTTCTTATAAGAAAACGTTAGATCATGCTCTAAAGTTTTGTACGTTGATGCAGGCGTTATAAGTAAATTTTATGTTTTGTCGGTAAGATTAGGTAATTTATAAGCAAAAGATGTATGAAGTGTACATAAAGATGCTTCTTAGGTAGAGGAGGGGATGAATTTGTTCGAGAGTTGAAGATATGTTTAAGTAAATAAAAATTGTGCTTTATTTGATACCTTAAACTTTTAGATGAGTTGATTACTCACAACATGATGTACGAGTAGATAGAGGTAGTTAGAAGTGTCCAGTGGGTCAAAGTCCCACATTAGTTGGAGAATGAACTGGTGGTCTGCTTATATGAACTTGAGTAATCTTCATCTCATGAACTAGCTTTTTCGGTTGAGTCAGACTCCAATATTATACTGGGGTCTTGGATTGAGTCTGACGGCCAAACATCTCTATTATCAAGAAGAACAAACAATGATTGTGATTACTGAAGCTGATTTAATTGAGGATGATGATATAAGCTAAACATAATCCAAATTAAACGCGTTCTTAGTTATACATATGCTTGCAGGGAAAAAGTCTTTTATTTGGTTGTGTCCAAAACCACAAGTACTAATCATGGATCCGGAGCTTATAAAGGAAGTATTCTCGAAAAATTATTTTTATCAAAAGCCTCATGGAAATCCATTTGCAGCGTTATTGGTACAAGGACTAGCAGCCTATGAGGAAGACAAATGGGCCAAACATAGAAAAATTATCAATCCCGCTTTCCATCTAGAGAAGCTAAAGGTTTGTCAGACGTTTCTTCGTTTTTCCTCCTTTAACGTATGACTATTTCTAGTAAATTCATCATTTGTCAAGACTCTTCTACAGTTCTATGTAAGTTCATAGGCTTGGACGGGGCATTTAGTCTATGTAAGTTGATAATGTCTTAGATATATTACCGTAAAATGAATCTTTTTTATATTAAAGAGATTTGTAATATTGCTGAACGTGTTTCACCTTAATTGTTGTTTGAACGCTCTTTCTTTTTATTAAACTAGATGGTGATGGTATCACTATATCTGTATTCCTAATTCTGTTTCAAGTGTTGTGTCATCGTTATATGTTCCCTTACATCATTTTCTCGAACAGCATATGCTTCCAGCTTTTCACTTGAGTTGTAGTGAGATGTTGAGTAAATGGGAAGAC---G---CTGTTGAAGGCTCTTGTGAGATAGATGTATGGCCTCACCTTCAGCAATTAACTTGTGATGTGATCTCTCGTACAGCTTTTGGTAGTAGTTACGAAGAAGGTAGAAAGATTTTTGAACTTCAAAGGGAACAAGCTCAGCATTTTATCGACACTGTACGCTCAGTTAATATCCCAAGATGGAGGTAAATTAATTTGCCTGAGAATCGAAAAATTGTAGCCAAAGCTATGTTGTTCGGACTCTTAAAAATGATGATGGTTGCATGTTGGATCTTCCAAATATTAGTGCATTTCTATAGAATCCGACATGGTTGCAGGAACTATTTTGGAGAGTCCGAACAACATAGAACCAAAGTTCATCAGGAGATGCACATAGCTTTTACTTCATCTAATGCATTTTGGTTTTCTGTCTTATAATATAATTTCAAAGATTTTTGC</genome_strand>
        <mrna_strand>AATATTAGTTACAGCATGTTGTTGTGCCATAACAATTACTCTGTTTGTTTGTTTATGGAAAGTACTGAATTGGGTTTGGTTCAGTCCAAAGAAGTTGGAGAAATTGTTGAGGAAACAAGGGCTAAATGGGAATTCATACAGATTATTGTATGGAGACATGAAAGATTTTTCTAAGATGATTAAAGAAGCTAATTCAAAGCCCATGAATTTGTCTGATGATATAACTCCAAGATTGGTGCCTTTCTTTCTTGAAACCATCAAGAAATATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAAAATCTTTTATATGGTTGGGTCCAAAACCACATGTACTAATCATGGACCCGGAGCTTATAAAGGAAGTATTCTCGAAAAACTATTTGTATCAAAAGCCTCATGGAAATCCATTTGCAGCATTATTTGTACAAGGACTACCAGCCTATGAGGAAGACAAATGGGCCAAACATAGAAAAATTATCGATCCCGCTTTCCATCTAGAGAAGCTAAAG.........................................................................................................................................................................................................................................................................................................................................................CATATGCTTCCAGCATTTCACTTGAGCTGCAATGAGATGTTGAGCAAATGGGAAGACGTTGTTCCAGTTGAAGGCTCTCGTGAGATAGATGTATGGCCTCACCTTCAGCAATTAACTTGCGATGTAATATCTCGTACAGCTTTTGGTAGTAGTTATGAAGATGGTAGAAAGATTTTTGAACTTCAAAGGGAACAAGCTCAGCATTTTATCGACACTGTACACTCAGTTTATATCCCAGGATGGAG.....................................................................................................................................................................................................................................................ATTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E391293" ref_strand="-" ref_description="SGN-E391293 [TUS-47-J5]">
      <seq>cgttgaggttatattccccaataacagtacttacgcgacgagtttatgaagacattacactaggagaagtatctctaccaactggtgtgctagtctcattgccaatgattttattgcatcatgataaagatatatggggtgaagatgcaaccaagttcaatccagagagatttagtgaaggaatatcaagtgcaacaaaaggtcaagttacatattttccatttgcttggggtccaagaatatgcattggacaaaattttgccatattagaagcaaagatgactctgtgtatgatcctacaaagcttctcttttgaattgtctccatcctacacacatgctcctcaatccttggtaaccactcagcctcagtatggtgctccacttattttccacaaactataatttcacaatctcgtgaagagtttattcagactcgattcagtgatggagttacaatatcgaaatacgggttcagaaacagtttctctatttcataaagacaggggattatgtgttgtactctccactctcccctgaccctcatattgggtatgttgtttttgttattcggacaaactcagtagttttcgttaaaagcttgcatttgtttgagcaaatccactaaaaatactatacaacatccgtgctagcacgaactcaatatatattgctttatgtgaaatagttgaaatttggagaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="43984" stop="42683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43684" g_stop="42984" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="702" polyA_stop="713"/>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E391293" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391293" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43684" e_stop="42984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCAACAAAAGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCTCCTCAATCCTTGGTAACCACTCAGCCTCAGTATGGTGCTCCACTTATTTTCCACAAACTATAATTTCACAATCTCGTGAAGAGTTTATTCAGACTCGATTCAGTGATGGAGTTACAATATCGAAATACGGGTTCAGAAACAGTTTCTCTATTTCATAAAGACAGGGGATTATGTGTTGTACTCTCCACTCTCCCCTGACCCTCATATTGGGTATGTTGTTTTTGTTATTCGGACAAACTCAGTAGTTTTCGTTAAAAGCTTGCATTTGTTTGAGCAAATCCACTAAAAATACTATACAACATCCGTGCTAGCACGAACTCAATATATATTGCTTTATGTGAAATAGTTGAAATTTGGAGA</genome_strand>
        <mrna_strand>CGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCAACAAAAGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCTCCTCAATCCTTGGTAACCACTCAGCCTCAGTATGGTGCTCCACTTATTTTCCACAAACTATAATTTCACAATCTCGTGAAGAGTTTATTCAGACTCGATTCAGTGATGGAGTTACAATATCGAAATACGGGTTCAGAAACAGTTTCTCTATTTCATAAAGACAGGGGATTATGTGTTGTACTCTCCACTCTCCCCTGACCCTCATATTGGGTATGTTGTTTTTGTTATTCGGACAAACTCAGTAGTTTTCGTTAAAAGCTTGCATTTGTTTGAGCAAATCCACTAAAAATACTATACAACATCCGTGCTAGCACGAACTCAATATATATTGCTTTATGTGAAATAGTTGAAATTTGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E308364" ref_strand="+" ref_description="SGN-E308364 [cLEY-25-D23]">
      <seq>gtttctctatttcataaagacaggggattatgtgttgtactctccactctcccctgaccctcatattgggtatgttgtttttgttattcggacaaactcagtagttttcgttaaaagcttgcatttgtttgagcaaatccactaaaaattctattcatcatccgtgctagcacgaactcaatatatattgctttatgtgaaatagttgaaatttggagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="43502" stop="42683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43202" g_stop="42984" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="220" polyA_stop="234"/>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E308364" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>219</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43202" e_stop="42984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTCTATTTCATAAAGACAGGGGATTATGTGTTGTACTCTCCACTCTCCCCTGACCCTCATATTGGGTATGTTGTTTTTGTTATTCGGACAAACTCAGTAGTTTTCGTTAAAAGCTTGCATTTGTTTGAGCAAATCCACTAAAAATACTATACAACATCCGTGCTAGCACGAACTCAATATATATTGCTTTATGTGAAATAGTTGAAATTTGGAGA</genome_strand>
        <mrna_strand>GTTTCTCTATTTCATAAAGACAGGGGATTATGTGTTGTACTCTCCACTCTCCCCTGACCCTCATATTGGGTATGTTGTTTTTGTTATTCGGACAAACTCAGTAGTTTTCGTTAAAAGCTTGCATTTGTTTGAGCAAATCCACTAAAAATTCTATTCATCATCCGTGCTAGCACGAACTCAATATATATTGCTTTATGTGAAATAGTTGAAATTTGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E351983" ref_strand="+" ref_description="SGN-E351983 [cTOS-13-I1]">
      <seq>ccatattagaagcaaagatgactctgtgtatgatcctacaaagcttctcttttgaattgtctccatcctacacacatgctcctcaatccttggtaaccactcagcctcagtatggtgctccacttattttccacaaactataatttcacaatctcgtgaagagtttattcagactcgattcagtgatggagttacaatatcgaaatacgggttcagaaacagtttctctatttcataaagacaggggattatgtgttgtactctccactctcccctgaccctcatattgggtatgttgtttttgttattcggacaaactcagtagttttcgttaaaagcttgcatttgtttgagcaaatccactaaaaatactatacaacatccgtgctagcacgaactcaatatatattgctttatgtgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="43723" stop="42699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43423" g_stop="42995" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E351983" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43423" e_stop="42995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCTCCTCAATCCTTGGTAACCACTCAGCCTCAGTATGGTGCTCCACTTATTTTCCACAAACTATAATTTCACAATCTCGTGAAGAGTTTATTCAGACTCGATTCAGTGATGGAGTTACAATATCGAAATACGGGTTCAGAAACAGTTTCTCTATTTCATAAAGACAGGGGATTATGTGTTGTACTCTCCACTCTCCCCTGACCCTCATATTGGGTATGTTGTTTTTGTTATTCGGACAAACTCAGTAGTTTTCGTTAAAAGCTTGCATTTGTTTGAGCAAATCCACTAAAAATACTATACAACATCCGTGCTAGCACGAACTCAATATATATTGCTTTATGTGAAATAGTTG</genome_strand>
        <mrna_strand>CCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCTCCTCAATCCTTGGTAACCACTCAGCCTCAGTATGGTGCTCCACTTATTTTCCACAAACTATAATTTCACAATCTCGTGAAGAGTTTATTCAGACTCGATTCAGTGATGGAGTTACAATATCGAAATACGGGTTCAGAAACAGTTTCTCTATTTCATAAAGACAGGGGATTATGTGTTGTACTCTCCACTCTCCCCTGACCCTCATATTGGGTATGTTGTTTTTGTTATTCGGACAAACTCAGTAGTTTTCGTTAAAAGCTTGCATTTGTTTGAGCAAATCCACTAAAAATACTATACAACATCCGTGCTAGCACGAACTCAATATATATTGCTTTATGTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E352938" ref_strand="+" ref_description="SGN-E352938 [cTOS-11-N14]">
      <seq>tgcttgggagtcgaaaaccagattttgatggattaaatcatctaaaagttgtaacaatgatcttgtacgagtcgttgaggttatattccccaataacagtacttacgcgacgagtttatgaagacattacactaggagaagtatctctaccaactggtgtgctagtctcattgccaatgattttattgcatcatgataaagatatatggggtgaagatgcaaccaagttcaatccagagagatttagtgaaggaatatcaagtgcaacaaaaggtcaagttacatattttccatttgcttggggtccaagaatatgcattggacaaaattttgccatattagaagcaaagatgactctgtgtatgatcctacaaagcttctcttttgaattgtctccatcctacacacatgctcctcaatccttggtaaccactcagcctcagtatggtgctccacttattttccacaaactataatttcacaatctcgtgaagagtttattcagactcgattcagtgatggagttacaatatcgaaatacgggttcagaaacagtttctctatttcataaagacaggggattatgtgttgtactctccactctcccctgaccctcatattgggtatgttgtttttgttattcggacaaactcagtagttttcgttaaaagcttgcatttgtttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="44147" stop="42771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43847" g_stop="43798" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43797" i_stop="43707" i_length="91">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.584" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43706" g_stop="43071" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="686" r_length="636" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E352938" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43847" e_stop="43798"/>
          <exon e_start="43706" e_stop="43071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTGGGAGTCGAAAACCAGATTTTGATGGATTAAATCATCTAAAAGTTGTAAGTATTCTTGTTCTGCCATTGGTACAAAAAGCACGTGTGAATTTCTTTTGATCATCTCGTTCATGCTAGAGGAGCATCTCTGTTACAGGTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCAACAAAAGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCTCCTCAATCCTTGGTAACCACTCAGCCTCAGTATGGTGCTCCACTTATTTTCCACAAACTATAATTTCACAATCTCGTGAAGAGTTTATTCAGACTCGATTCAGTGATGGAGTTACAATATCGAAATACGGGTTCAGAAACAGTTTCTCTATTTCATAAAGACAGGGGATTATGTGTTGTACTCTCCACTCTCCCCTGACCCTCATATTGGGTATGTTGTTTTTGTTATTCGGACAAACTCAGTAGTTTTCGTTAAAAGCTTGCATTTGTTTGA</genome_strand>
        <mrna_strand>TGCTTGGGAGTCGAAAACCAGATTTTGATGGATTAAATCATCTAAAAGTT...........................................................................................GTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCAACAAAAGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCTCCTCAATCCTTGGTAACCACTCAGCCTCAGTATGGTGCTCCACTTATTTTCCACAAACTATAATTTCACAATCTCGTGAAGAGTTTATTCAGACTCGATTCAGTGATGGAGTTACAATATCGAAATACGGGTTCAGAAACAGTTTCTCTATTTCATAAAGACAGGGGATTATGTGTTGTACTCTCCACTCTCCCCTGACCCTCATATTGGGTATGTTGTTTTTGTTATTCGGACAAACTCAGTAGTTTTCGTTAAAAGCTTGCATTTGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E353416" ref_strand="+" ref_description="SGN-E353416 [cTOS-15-D8]">
      <seq>ttatgaagacattacactaggagaagtatctctaccaactggtgtgctagtctcattgccaatgattttattgcatcatgataaagatatatggggtgaagatgcaaccaagttcaatccagagagatttagtgaaggaatatcaagtgcaacaaaaggtcaagttacatattttccatttgcttggggtccaagaatatgcattggacaaaattttgccatattagaagcaaagatgactctgtgtatgatcctacaaagcttctcttttgaattgtctccatcctacacacatgctcctcaatccttggtaaccactcagcctcagtatggtgctccacttattttccacaaactataatttcacaatctcgtgaagagtttattcagactcgattcagtgatggagttacaatatcgaaatacgggttcagaaacagtttctctatttcataaagacaggggattatgtgttgtactctccactctcccctgancctcatattggggatggtgnttttgttattcggacaaactcagtagttttcgttaaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="43941" stop="42784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43641" g_stop="43084" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E353416" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43641" e_stop="43084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCAACAAAAGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCTCCTCAATCCTTGGTAACCACTCAGCCTCAGTATGGTGCTCCACTTATTTTCCACAAACTATAATTTCACAATCTCGTGAAGAGTTTATTCAGACTCGATTCAGTGATGGAGTTACAATATCGAAATACGGGTTCAGAAACAGTTTCTCTATTTCATAAAGACAGGGGATTATGTGTTGTACTCTCCACTCTCCCCTGACCCTCATATTGGGTATGTTGTTTTTGTTATTCGGACAAACTCAGTAGTTTTCGTTAAAAGCT</genome_strand>
        <mrna_strand>TTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCAACAAAAGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCTCCTCAATCCTTGGTAACCACTCAGCCTCAGTATGGTGCTCCACTTATTTTCCACAAACTATAATTTCACAATCTCGTGAAGAGTTTATTCAGACTCGATTCAGTGATGGAGTTACAATATCGAAATACGGGTTCAGAAACAGTTTCTCTATTTCATAAAGACAGGGGATTATGTGTTGTACTCTCCACTCTCCCCTGANCCTCATATTGGGGATGGTGNTTTTGTTATTCGGACAAACTCAGTAGTTTTCGTTAAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E723082" ref_strand="+" ref_description="SGN-E723082 [FC19BC06]">
      <seq>attttgatggattaaatcatctaaaagttgtaacaatgatcttgtacgagtcgttgaggttatattccccaataacagtacttacgcgacgagtttatgaagacattacactaggagaagtatctctaccaactggtgtgctagtctcattgccaatgattttattgcatcatgataaagatatatggggtgaagatgcaaccaagttcaatccaaagagatttagtgaaggaatatcatgtgcagcaaagggtcaagttacatattttccatttgcttggggtccaagaatatgcattggacaaaattttgccatattagaagcaaagatgactctgtgtatgatcctacaaagcttctcttttgaattgtctccatcctacacacatgctcctcaatccttggtaaccactcagcctcagtatggggctccacttattttccacaaactataatttcgaaaagtttattcagactcgattcagtgatggagttacaatatcaaaatacgggttcagaaacagtttctctatttcataaagacaggggattatgtgttgtactctccactctcccctgaccctcatattgggaatgttgtttttgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="44126" stop="42817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43826" g_stop="43798" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43797" i_stop="43707" i_length="91">
            <donor d_prob="0.916" d_score="0.00"/>
            <acceptor a_prob="0.584" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43706" g_stop="43117" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="609" r_length="580" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E723082" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43826" e_stop="43798"/>
          <exon e_start="43706" e_stop="43117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGATGGATTAAATCATCTAAAAGTTGTAAGTATTCTTGTTCTGCCATTGGTACAAAAAGCACGTGTGAATTTCTTTTGATCATCTCGTTCATGCTAGAGGAGCATCTCTGTTACAGGTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCAACAAAAGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCTCCTCAATCCTTGGTAACCACTCAGCCTCAGTATGGTGCTCCACTTATTTTCCACAAACTATAATTTCACAATCTCGTGAAGAGTTTATTCAGACTCGATTCAGTGATGGAGTTACAATATCGAAATACGGGTTCAGAAACAGTTTCTCTATTTCATAAAGACAGGGGATTATGTGTTGTACTCTCCACTCTCCCCTGACCCTCATATTGGGTATGTTGTTTTTGTTA</genome_strand>
        <mrna_strand>ATTTTGATGGATTAAATCATCTAAAAGTT...........................................................................................GTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATCCAAAGAGATTTAGTGAAGGAATATCATGTGCAGCAAAGGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCTCCTCAATCCTTGGTAACCACTCAGCCTCAGTATGGGGCTCCACTTATTTTCCACAAACTATAA--T-----T-TC--GAAAAGTTTATTCAGACTCGATTCAGTGATGGAGTTACAATATCAAAATACGGGTTCAGAAACAGTTTCTCTATTTCATAAAGACAGGGGATTATGTGTTGTACTCTCCACTCTCCCCTGACCCTCATATTGGGAATGTTGTTTTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E405506" ref_strand="+" ref_description="SGN-E405506 [PPC-18-B17]">
      <seq>tatcgaagaagtcattgaagaatgcaagctattctattttgctggcgcagaaactacatcagtgtggattctgtggactctggtgttgttgagcagatatccagattggcaggcacgggccagagaagaagtcttgcaagtgtttgggagtcggaaaccagattttgatggattaaatcatctaaaagttgtaacgatgatcttaaacgagtcattaaggctatattccccgataacagtactttcacgacgaatttatgaagacattacgctaggagaagtatctctaccaactggtgtgctagtcacattgccaatgatattattgcatcatgataaagatatatggggtgaagatgcaaacaagttcaatccagatagatttagagaaggaatatcaagtgcaacaaagggtcaagttacatattttccatttgcttggggtcctagaatgtgcattggacaaaattttgccatgttagaggcaaagatgactttgtctatgatcctacaaagcttctcttttgaattgtctccatcctacacccattctcctgagtcctcggtaaccactcagcctcagtatggtgctccacttattttccacaaactataatttcatatttttgtgaagagtttattgagactcgattcanggggtggagttacaatattaattatgggttcagaaacatgtttctctacgtcataaagataggggattatatggtgtactctccactctcccttgacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="44287" stop="42844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43987" g_stop="43798" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43797" i_stop="43707" i_length="91">
            <donor d_prob="0.916" d_score="0.96"/>
            <acceptor a_prob="0.584" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43706" g_stop="43143" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="755" r_length="565" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E405506" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43987" e_stop="43798"/>
          <exon e_start="43706" e_stop="43143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCGAAGAAGTCATTGAAGAATGCAAGCTGTTCTATTTTGCTGGTGCAGAAACTACATCAGTGTGGATTCTGTGGACGCTGGTGTTGTTGAGCAGACATCCAGATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTTTGATGGATTAAATCATCTAAAAGTTGTAAGTATTCTTGTTCTGCCATTGGTACAAAAAGCACGTGTGAATTTCTTTTGATCATCTCGTTCATGCTAGAGGAGCATCTCTGTTACAGGTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCAACAAAAGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCTCCTCAATCCTTGGTAACCACTCAGCCTCAGTATGGTGCTCCACTTATTTTCCACAAACTATAATTTCACAATCTCGTGAAGAGTTTATTCAGACTCGATTCA-GTGATGGAGTTACAATATCGAAATACGGGTTCAGAAACA-GTTTCTCTATTTCATAAAGACAGGGGATTATGTGTTGTACTCTCCACTCTCCCCTGACCC</genome_strand>
        <mrna_strand>TATCGAAGAAGTCATTGAAGAATGCAAGCTATTCTATTTTGCTGGCGCAGAAACTACATCAGTGTGGATTCTGTGGACTCTGGTGTTGTTGAGCAGATATCCAGATTGGCAGGCACGGGCCAGAGAAGAAGTCTTGCAAGTGTTTGGGAGTCGGAAACCAGATTTTGATGGATTAAATCATCTAAAAGTT...........................................................................................GTAACGATGATCTTAAACGAGTCATTAAGGCTATATTCCCCGATAACAGTACTTTCACGACGAATTTATGAAGACATTACGCTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCACATTGCCAATGATATTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAAACAAGTTCAATCCAGATAGATTTAGAGAAGGAATATCAAGTGCAACAAAGGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCTAGAATGTGCATTGGACAAAATTTTGCCATGTTAGAGGCAAAGATGACTTTGTCTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACCCATTCTCCTGAGTCCTCGGTAACCACTCAGCCTCAGTATGGTGCTCCACTTATTTTCCACAAACTATAATTTCATATTTTTGTGAAGAGTTTATTGAGACTCGATTCANGGGGTGGAGTTACAATAT-TAATTATGGGTTCAGAAACATGTTTCTCTACGTCATAAAGATAGGGGATTATATGGTGTACTCTCCACTCTCCCTTGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E401926" ref_strand="-" ref_description="SGN-E401926 [PPC-5-D8]">
      <seq>cattgccaattatcttattgcatcatgacaaagatatatggggtgaagatgcaaacaagttcaatccagagagatttagagaaggaatatcaggtgcaacaaagggtcaagttacatattttccatttgcttggggtccaagaatatgcattggacaaaattttgccatgttagaggcaaaggtgactttgtgtgtgatcctacaaagcttctcttttgaattgtctccatcctacacacatgctcctcagtcctcagtgaccactcagcctcagtatggtgctccacttattttccataaactataatttcatattctgtgaagagttcattcagactcgattcatgggtggagttacaatattaaatatgggttcagaaacagtttctctatttcataaagataggggattccgtggtgtactccccactctcccctaaaaaaaaaaaaaaaaaaaaaaaaactcgagactagttctctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="43888" stop="42846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43588" g_stop="43148" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="440" polyA_stop="465"/>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E401926" ref_strand="-">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401926" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43588" e_stop="43148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCAACAAAAGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCTCCTCAATCCTTGGTAACCACTCAGCCTCAGTATGGTGCTCCACTTATTTTCCACAAACTATAATTTCACAATCTCGTGAAGAGTTTATTCAGACTCGATTCAGTGATGGAGTTACAATATCGAAATACGGGTTCAGAAACAGTTTCTCTATTTCATAAAGACAGGGGATTATGTGTTGTACTCTCCACTCTCCCCT</genome_strand>
        <mrna_strand>CATTGCCAATTATCTTATTGCATCATGACAAAGATATATGGGGTGAAGATGCAAACAAGTTCAATCCAGAGAGATTTAGAGAAGGAATATCAGGTGCAACAAAGGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATGTTAGAGGCAAAGGTGACTTTGTGTGTGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCTCCTCAGTCCTCAGTGACCACTCAGCCTCAGTATGGTGCTCCACTTATTTTCCATAAACTATAATTTCATATTCT-GTGAAGAGTTCATTCAGACTCGATTCATGGGTGGAGTTACAATAT-TAAATATGGGTTCAGAAACAGTTTCTCTATTTCATAAAGATAGGGGATTCCGTGGTGTACTCCCCACTCTCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E230945" ref_strand="+" ref_description="SGN-E230945 [cLED-5-C5]">
      <seq>ttaaatcatctaaaagttgtaacaatgatcttgtacgagtcgttgaggttatattccccaataacagtacttacgcgacgagtttatgaagacattacactaggagaagtatctctaccaactggtgtgctagtctcattgccaatgattttattgcatcatgataaagatatatggggtgaagatgcaaccaagttcaatccagagagatttagtgaaggaatatcaagtgcaacaaaaggtcaagttacatattttccatttgcttggggtccaagaatatgcattggacaaaattttgccatattagaagcaaagatgactctgtgtatgatcctacaaagcttctcttttgaattgtctccatcctacacacatgctcctcaatccttggtaaccactcagcctcagtatggtgctccacttattttccacaaactataatttcacaatctcgtgaagagtttattcagactcgattcagtgatggagttacaatatcgaaatacgggttcagaaacagtttctctatttcataaagacaggggattatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="44115" stop="42870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43815" g_stop="43798" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43797" i_stop="43707" i_length="91">
            <donor d_prob="0.916" d_score="0.00"/>
            <acceptor a_prob="0.584" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43706" g_stop="43170" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="555" r_length="537" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E230945" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43815" e_stop="43798"/>
          <exon e_start="43706" e_stop="43170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATCATCTAAAAGTTGTAAGTATTCTTGTTCTGCCATTGGTACAAAAAGCACGTGTGAATTTCTTTTGATCATCTCGTTCATGCTAGAGGAGCATCTCTGTTACAGGTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCAACAAAAGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCTCCTCAATCCTTGGTAACCACTCAGCCTCAGTATGGTGCTCCACTTATTTTCCACAAACTATAATTTCACAATCTCGTGAAGAGTTTATTCAGACTCGATTCAGTGATGGAGTTACAATATCGAAATACGGGTTCAGAAACAGTTTCTCTATTTCATAAAGACAGGGGATTATGT</genome_strand>
        <mrna_strand>TTAAATCATCTAAAAGTT...........................................................................................GTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCAACAAAAGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCTCCTCAATCCTTGGTAACCACTCAGCCTCAGTATGGTGCTCCACTTATTTTCCACAAACTATAATTTCACAATCTCGTGAAGAGTTTATTCAGACTCGATTCAGTGATGGAGTTACAATATCGAAATACGGGTTCAGAAACAGTTTCTCTATTTCATAAAGACAGGGGATTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E353629" ref_strand="+" ref_description="SGN-E353629 [cTOS-10-O17]">
      <seq>ggcatattgctggaatcgaattttaaagaaattgaactgcacggtaacaaggactttggaatgagtatcgaagaagtcattgaagaatgcaagctgttctattttgctggtgcagaaactacatcagtgtggattctgtggacgctggtgttgttgagcagacatccagattggcaggaacgggccagagaagaagtattgcaagtgcttgggagtcgaaaaccagattttgatggattaaatcatctaaaagttgtaacaatgatcttgtacgagtcgttgaggttatattccccaataacagtacttacgcgacgagtttatgaagacattacactaggagaagtatctctaccaactggtgtgctagtctcattgccaatgattttattgcatcatgataaagatatatggggtgaagatgcaaccaagttcaatccagagagatttagtgaaggaatatcaagtgcaacaaaaggtcaagttacatattttccatttgcttggggtccaagaatatgcattggacaaaattttgccatattagaagcaaagatgactctgtgtatgatcctacaaagcttctcttttgaattgtctccatcctacacacatgctcctcaatccttggtaaccactcagcctcagtatggtgctccacttattttccacaaactataatttcacaatctcgtgaagagtttattcagactcgattcagtgatggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="44352" stop="42932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44052" g_stop="43798" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43797" i_stop="43707" i_length="91">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.584" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43706" g_stop="43232" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="730" r_length="475" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E353629" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44052" e_stop="43798"/>
          <exon e_start="43706" e_stop="43232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATATTGCTGGAATCGAATTTTAAAGAAATTGAACTGCACGGTAACAAGGACTTTGGAATGAGTATCGAAGAAGTCATTGAAGAATGCAAGCTGTTCTATTTTGCTGGTGCAGAAACTACATCAGTGTGGATTCTGTGGACGCTGGTGTTGTTGAGCAGACATCCAGATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTTTGATGGATTAAATCATCTAAAAGTTGTAAGTATTCTTGTTCTGCCATTGGTACAAAAAGCACGTGTGAATTTCTTTTGATCATCTCGTTCATGCTAGAGGAGCATCTCTGTTACAGGTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCAACAAAAGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCTCCTCAATCCTTGGTAACCACTCAGCCTCAGTATGGTGCTCCACTTATTTTCCACAAACTATAATTTCACAATCTCGTGAAGAGTTTATTCAGACTCGATTCAGTGATGGAGT</genome_strand>
        <mrna_strand>GGCATATTGCTGGAATCGAATTTTAAAGAAATTGAACTGCACGGTAACAAGGACTTTGGAATGAGTATCGAAGAAGTCATTGAAGAATGCAAGCTGTTCTATTTTGCTGGTGCAGAAACTACATCAGTGTGGATTCTGTGGACGCTGGTGTTGTTGAGCAGACATCCAGATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTTTGATGGATTAAATCATCTAAAAGTT...........................................................................................GTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCAACAAAAGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCTCCTCAATCCTTGGTAACCACTCAGCCTCAGTATGGTGCTCCACTTATTTTCCACAAACTATAATTTCACAATCTCGTGAAGAGTTTATTCAGACTCGATTCAGTGATGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E709105" ref_strand="+" ref_description="SGN-E709105 [FA42CH02]">
      <seq>cggtagaatgaagaaattaaaaaatgatgttcggtcttcaattagaggtattattgataaaagattgaaggcaatggaagcagggaacgcggataatgaggatctattgggcatattgctggaatcgaattttaaagaaattgaactgcacggtaacaaggactttggaatgagtatcgaagaagtcattgaagaatgcaagctgttctattttgctggtgcagaaactacatcagtgtggattctgtggacgctggtgttgttgagcagacatccagattggcaggaacgggccagagaagaagtattgcaagtgcttgggagtcgaaaaccagattttgatggattaaatcatctaaaagttgtaacaatgatcttgtacgagtcgttgaggttatattccccaataacagtacttacgcgacgagtttatgaagacattacactaggagaagtatctctaccaactggtgtgctagtctcattgccaatgattttattgcatcatgataaagatatatggggtgaagatgcaaccaagttcaatccagagagatttagtgaaggaatatcaagtgcagcaaagggtcaagttacatattttccatttgcttggggtccaagaatatgcattggacaaaattttgccatattagaagcaaagatgactctgtgtatgatcctacaaagcttctcttttgaattgtctccatcctacacacatgctcctcaatccttggtaaccactcagcctcagtatggtgctccacttattttccacaaactataatttcgaagagtttattcagactcgattcagtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="44461" stop="42952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44161" g_stop="43798" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43797" i_stop="43707" i_length="91">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.584" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43706" g_stop="43237" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="824" r_length="460" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E709105" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44161" e_stop="43798"/>
          <exon e_start="43706" e_stop="43237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGAATGAAGGAATTAAAAAATGATGTTCGGTCTTCAATTAGAGGTATTATTGATAAAAGATTGAAGGCAATGGAAGCAGGGAACGCGGATAATGAGGATCTATTGGGCATATTGCTGGAATCGAATTTTAAAGAAATTGAACTGCACGGTAACAAGGACTTTGGAATGAGTATCGAAGAAGTCATTGAAGAATGCAAGCTGTTCTATTTTGCTGGTGCAGAAACTACATCAGTGTGGATTCTGTGGACGCTGGTGTTGTTGAGCAGACATCCAGATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTTTGATGGATTAAATCATCTAAAAGTTGTAAGTATTCTTGTTCTGCCATTGGTACAAAAAGCACGTGTGAATTTCTTTTGATCATCTCGTTCATGCTAGAGGAGCATCTCTGTTACAGGTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCAACAAAAGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCTCCTCAATCCTTGGTAACCACTCAGCCTCAGTATGGTGCTCCACTTATTTTCCACAAACTATAATTTCACAATCTCGTGAAGAGTTTATTCAGACTCGATTCAGTGAT</genome_strand>
        <mrna_strand>CGGTAGAATGAAGAAATTAAAAAATGATGTTCGGTCTTCAATTAGAGGTATTATTGATAAAAGATTGAAGGCAATGGAAGCAGGGAACGCGGATAATGAGGATCTATTGGGCATATTGCTGGAATCGAATTTTAAAGAAATTGAACTGCACGGTAACAAGGACTTTGGAATGAGTATCGAAGAAGTCATTGAAGAATGCAAGCTGTTCTATTTTGCTGGTGCAGAAACTACATCAGTGTGGATTCTGTGGACGCTGGTGTTGTTGAGCAGACATCCAGATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTTTGATGGATTAAATCATCTAAAAGTT...........................................................................................GTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCAGCAAAGGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCTCCTCAATCCTTGGTAACCACTCAGCCTCAGTATGGTGCTCCACTTATTTTCCACAAACTATAA--T-----T-TC--GAAGAGTTTATTCAGACTCGATTCAGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E231531" ref_strand="+" ref_description="SGN-E231531 [cLED-4-H21]">
      <seq>cagattggcaggaacgggccagagaagaagtattgcaagtgcttgggagtcgaaaaccagattttgatggattaaatcatctaaaagttgtaacaatgatcttgtacgagtcgttgaggttatattccccaataacagtacttacgcgacgagtttatgaagacattacactaggagaagtatctctaccaactggtgtgctagtctcattgccaatgattttattgcatcatgataaagatatatggggtgaagatgcaaccaagttcaatccagagagatttagtgaaggaatatcaagtgcaacaaaaggtcaagttacatattttccatttgcttggggtccaagaatatgcattggacaaaattttgccatattagaagcaaagatgactctgtgtatgatcctacaaagcttctcttttgaattgtctccatcctacacacatgctcctcaatccttggtaaccactcagcctcagtatggtgctccacttattttccacaaactataatttcacaatctcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="44186" stop="42966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43886" g_stop="43798" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43797" i_stop="43707" i_length="91">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.584" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43706" g_stop="43266" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="530" r_length="441" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E231531" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43886" e_stop="43798"/>
          <exon e_start="43706" e_stop="43266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTTTGATGGATTAAATCATCTAAAAGTTGTAAGTATTCTTGTTCTGCCATTGGTACAAAAAGCACGTGTGAATTTCTTTTGATCATCTCGTTCATGCTAGAGGAGCATCTCTGTTACAGGTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCAACAAAAGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCTCCTCAATCCTTGGTAACCACTCAGCCTCAGTATGGTGCTCCACTTATTTTCCACAAACTATAATTTCACAATCTCGTG</genome_strand>
        <mrna_strand>CAGATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTTTGATGGATTAAATCATCTAAAAGTT...........................................................................................GTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCAACAAAAGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCTCCTCAATCCTTGGTAACCACTCAGCCTCAGTATGGTGCTCCACTTATTTTCCACAAACTATAATTTCACAATCTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E243512" ref_strand="+" ref_description="SGN-E243512 [cLED-34-F24]">
      <seq>ttaaatcatctaaaagttgtaacaatgatcttgtacgagtcgttgaggttatattccccaataacagtacttacgcgacgagtttatgaagacattacactaggagaagtatctctaccaactggtgtgctagtctcattgccaatgattttattgcatcatgataaagatatatggggtgaagatgcaaccaagttcaattcagagagatttagtgaaggaatatcaagtgcaacaaaaggtcaagttacatattttgcatttgcttggggtccacgaatatgcattggacaaaattttgccatattagaagcaaagatgactctgtgtatgatcctacaaagcttctcttatgaattgtctccatcctacacacatgctcctcaatccttggtaaccactcagcctcagtatggtgctccacttattttccacaaactataatttcacaatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="44115" stop="42969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43815" g_stop="43798" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43797" i_stop="43707" i_length="91">
            <donor d_prob="0.916" d_score="0.00"/>
            <acceptor a_prob="0.584" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43706" g_stop="43269" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="456" r_length="438" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E243512" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43815" e_stop="43798"/>
          <exon e_start="43706" e_stop="43269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATCATCTAAAAGTTGTAAGTATTCTTGTTCTGCCATTGGTACAAAAAGCACGTGTGAATTTCTTTTGATCATCTCGTTCATGCTAGAGGAGCATCTCTGTTACAGGTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCAACAAAAGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCTCCTCAATCCTTGGTAACCACTCAGCCTCAGTATGGTGCTCCACTTATTTTCCACAAACTATAATTTCACAATCTC</genome_strand>
        <mrna_strand>TTAAATCATCTAAAAGTT...........................................................................................GTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATTCAGAGAGATTTAGTGAAGGAATATCAAGTGCAACAAAAGGTCAAGTTACATATTTTGCATTTGCTTGGGGTCCACGAATATGCATTGGACAAAATTTTGCCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTATGAATTGTCTCCATCCTACACACATGCTCCTCAATCCTTGGTAACCACTCAGCCTCAGTATGGTGCTCCACTTATTTTCCACAAACTATAATTTCACAATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E242842" ref_strand="+" ref_description="SGN-E242842 [cLED-31-J14]">
      <seq>cagattggcaggaacgggccagagaagaagtattgcaagtgcttgggagtcgaaaaccagattttgatggattaaatcatctaaaagttgtaacaatgatcttgtacgagtcgttgaggttatattccccaataacagtacttacgcgacgagtttatgaagacattacactaggagaagtatctctaccaactggtgtgctagtctcattgccaatgattttattgcatcatgataaagatatatggggtgaagatgcaaccaagttcaatccagagagatttagtgaaggaatatcaagtgcaacaaaaggtcaagttacatattttccatttgcttggggtccaagaatatgcattggacaaaattttgccatattagaagcaaagatgactctgtgtatgatcctacaaagcttctcttttgaattgtctccatcctacacacatgctcctcaatccttggtaaccactcagcctcagtatggtgctccacttattttccacaaactataatttcacaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="44186" stop="42971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43886" g_stop="43798" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43797" i_stop="43707" i_length="91">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.584" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43706" g_stop="43271" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="525" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E242842" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43886" e_stop="43798"/>
          <exon e_start="43706" e_stop="43271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTTTGATGGATTAAATCATCTAAAAGTTGTAAGTATTCTTGTTCTGCCATTGGTACAAAAAGCACGTGTGAATTTCTTTTGATCATCTCGTTCATGCTAGAGGAGCATCTCTGTTACAGGTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCAACAAAAGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCTCCTCAATCCTTGGTAACCACTCAGCCTCAGTATGGTGCTCCACTTATTTTCCACAAACTATAATTTCACAATC</genome_strand>
        <mrna_strand>CAGATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTTTGATGGATTAAATCATCTAAAAGTT...........................................................................................GTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCAACAAAAGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCTCCTCAATCCTTGGTAACCACTCAGCCTCAGTATGGTGCTCCACTTATTTTCCACAAACTATAATTTCACAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E241836" ref_strand="+" ref_description="SGN-E241836 [cLED-27-M23]">
      <seq>cagattggcaggaacgggccagagaagaagtattgcaagtgcttgggagtcgaaaaccatattttgatggattaaatcatctaaaagttgtaacaatgatcttgtacgagtcgttgaggttatattccccaataacagtacttacgcgacgagtttatgaagacattacactaggagaagtatctctaccaactggtgtgctagtctcattgcccatgattttattgcatcatgataaacatatatggggtgaagatgcaaccaagttcaatccagagagatttagtgaaggaatatcaagtgccacaaaaggtcaaggtacatattttccatttgcttggggtgcaagaatatgcattggacaaaactttgccatattataagcacagatgactctgtgtatgatcctacaaagcttctcttttgaattgtctgcatcctacacacatgctcctcaatccttggtaaccactcagcctcagtatggtgctccacttattttccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="44186" stop="42990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43886" g_stop="43798" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43797" i_stop="43707" i_length="91">
            <donor d_prob="0.916" d_score="0.98"/>
            <acceptor a_prob="0.584" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43706" g_stop="43290" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="506" r_length="417" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E241836" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43886" e_stop="43798"/>
          <exon e_start="43706" e_stop="43290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTTTGATGGATTAAATCATCTAAAAGTTGTAAGTATTCTTGTTCTGCCATTGGTACAAAAAGCACGTGTGAATTTCTTTTGATCATCTCGTTCATGCTAGAGGAGCATCTCTGTTACAGGTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCAACAAAAGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCTCCTCAATCCTTGGTAACCACTCAGCCTCAGTATGGTGCTCCACTTATTTTCCAC</genome_strand>
        <mrna_strand>CAGATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCATATTTTGATGGATTAAATCATCTAAAAGTT...........................................................................................GTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCCATGATTTTATTGCATCATGATAAACATATATGGGGTGAAGATGCAACCAAGTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCCACAAAAGGTCAAGGTACATATTTTCCATTTGCTTGGGGTGCAAGAATATGCATTGGACAAAACTTTGCCATATTATAAGCACAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTGCATCCTACACACATGCTCCTCAATCCTTGGTAACCACTCAGCCTCAGTATGGTGCTCCACTTATTTTCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E243850" ref_strand="+" ref_description="SGN-E243850 [cLED-35-I21]">
      <seq>cagattggcaggaacgggccatagaagaagtattgcaagtgcttgggagtcgaaaaccagattttgatggattaaatcatctaaaagttgtaacaatgatcttgtacgagtcgttgaggttatattccccaataacagtacttacgcgacgagtttatgaagacattacactaggagaagtatctctaccaactggtgtgctagtctcattgccaatgattttattgcatcatgataaagatatatggggtgaagatgcaaccaagttcaatccagagagatttagtgaaggaatatcaagtgcaacaaaaggtcaagttacatattttccatttgcttggggtccaagaatatgcattggacaaaattttgccatattagaagcaaagatgactctgtgtatgatcctacaaagcttctcttttgaattgtctccatcctacacacatgctcctcaatccttggtaaccactcagcctcagtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="44186" stop="43010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43886" g_stop="43798" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43797" i_stop="43707" i_length="91">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.584" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43706" g_stop="43310" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="486" r_length="397" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E243850" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43886" e_stop="43798"/>
          <exon e_start="43706" e_stop="43310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTTTGATGGATTAAATCATCTAAAAGTTGTAAGTATTCTTGTTCTGCCATTGGTACAAAAAGCACGTGTGAATTTCTTTTGATCATCTCGTTCATGCTAGAGGAGCATCTCTGTTACAGGTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCAACAAAAGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCTCCTCAATCCTTGGTAACCACTCAGCCTCAGTATG</genome_strand>
        <mrna_strand>CAGATTGGCAGGAACGGGCCATAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTTTGATGGATTAAATCATCTAAAAGTT...........................................................................................GTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCAACAAAAGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCTCCTCAATCCTTGGTAACCACTCAGCCTCAGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E710034" ref_strand="+" ref_description="SGN-E710034 [FA54AA10]">
      <seq>cggatttttgaacttcaaaaggaacaagctcagcattttctccaagttatacgctcagtttatatcccaggatggagatttttgccaacaaagaggaacagaagaatgaagaaattaaaaaatgatgttcggtcttcaattagaggtattattgataaaagattgaaggcaatggaagcagggaacgcggataatgaggatctattgggcatattgctggaatcgaattttaaagaaattgaactgcacggtaacaaggactttggaatgagtatcgaagaagtcattgaagaatgcaagctgttctattttgctggtgcagaaactacatcagtgtggattctgtggacgctggtgttgttgagcagacatccagattggcaggaacgggccagagaagaagtattgcaagtgcttgggagtcgaaaaccagattttgatggattaaatcatctaaaagttgtaacaatgatcttgtacgagtcgttgaggttatattccccaataacagtacttacgcgacgagtttatgaagacattacactaggagaagtatctctaccaactggtgtgctagtctcattgccaatgattttattgcatcatgataaagatatatggggtgaagatgcaaccaagttcaatccagagagatttagtgaaggaatatcaagtgcagcaaagggtcaagttacatattttccatttgcttggggtccaagaatatgcattggacaaaattttgccatattagaagcaaagatgactctgtgtatgatcctacaaagcttctcttttgaaatgtctccatcctacacacatgctcctcaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="44652" stop="43035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44354" g_stop="44278" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44277" i_stop="44183" i_length="95">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44182" g_stop="43798" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="462" r_length="385" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43797" i_stop="43707" i_length="91">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.584" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43706" g_stop="43335" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="834" r_length="372" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E710034" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44354" e_stop="44278"/>
          <exon e_start="44182" e_stop="43798"/>
          <exon e_start="43706" e_stop="43335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTTTTGAACTTCAAAAGGAACAAGCTCAGCATTTTCTCGAAGTTATACGCTCAGTTTATATCCCAGGATGGAGGTAAACTTATTGCTCCAAAGAATCCGAAAAATGTAGCTATAGGAAATGATTAGTTCTAATATTTGTTAATACGTTTTGGTTTTGTGTTTTCAAAGATTTTTACCAACAAAGAGGAACAGAAGAATGAAGGAATTAAAAAATGATGTTCGGTCTTCAATTAGAGGTATTATTGATAAAAGATTGAAGGCAATGGAAGCAGGGAACGCGGATAATGAGGATCTATTGGGCATATTGCTGGAATCGAATTTTAAAGAAATTGAACTGCACGGTAACAAGGACTTTGGAATGAGTATCGAAGAAGTCATTGAAGAATGCAAGCTGTTCTATTTTGCTGGTGCAGAAACTACATCAGTGTGGATTCTGTGGACGCTGGTGTTGTTGAGCAGACATCCAGATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTTTGATGGATTAAATCATCTAAAAGTTGTAAGTATTCTTGTTCTGCCATTGGTACAAAAAGCACGTGTGAATTTCTTTTGATCATCTCGTTCATGCTAGAGGAGCATCTCTGTTACAGGTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCAACAAAAGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCTCCTCAATCC</genome_strand>
        <mrna_strand>CGGATTTTTGAACTTCAAAAGGAACAAGCTCAGCATTTTCTCCAAGTTATACGCTCAGTTTATATCCCAGGATGGAG...............................................................................................ATTTTTGCCAACAAAGAGGAACAGAAGAATGAAGAAATTAAAAAATGATGTTCGGTCTTCAATTAGAGGTATTATTGATAAAAGATTGAAGGCAATGGAAGCAGGGAACGCGGATAATGAGGATCTATTGGGCATATTGCTGGAATCGAATTTTAAAGAAATTGAACTGCACGGTAACAAGGACTTTGGAATGAGTATCGAAGAAGTCATTGAAGAATGCAAGCTGTTCTATTTTGCTGGTGCAGAAACTACATCAGTGTGGATTCTGTGGACGCTGGTGTTGTTGAGCAGACATCCAGATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTTTGATGGATTAAATCATCTAAAAGTT...........................................................................................GTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCAGCAAAGGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAAATGTCTCCATCCTACACACATGCTCCTCAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E444480" ref_strand="+" ref_description="SGN-E444480 [cSTA-43-G5]">
      <seq>gctggaatcgaattttaaagaaattgaactgcacggaaataaggactttggaatgagcattgaagaagtcattgaagaatgcaagctattctattttgctggcgcagaaactacatcagtgtggattctgtggactctggtgttgttgagcagatatccagattggcaggcacgggccagagaagaagtcttgcaagtgtttgggagtcggaaaccagattttgatggcttaaatcatctaaaagttgtaacgatgatcttgtacgagtcgttaaggctatattccccaataacagtacttgcccgacgaatttatgaagacattacgctaggagaagtatctctaccaactggtgtgctagtctcattgccaattatcttattgcatcatgataaagatatatggggtgaagatgcaaacaagttcaatccagagagatttagagaaggaatatcaagtgcaacaaagggtcaagttacatattttccatttgcttggggtccaagaatatgcattggacaaaattttgccatgttagaggcaaagatgactgtgtgtatgatcctacaaagcttcttttttgaattgtctncatcctacacacatgctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="44344" stop="43042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44044" g_stop="43798" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43797" i_stop="43707" i_length="91">
            <donor d_prob="0.916" d_score="0.94"/>
            <acceptor a_prob="0.584" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43706" g_stop="43342" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="612" r_length="365" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E444480" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44044" e_stop="43798"/>
          <exon e_start="43706" e_stop="43342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGAATCGAATTTTAAAGAAATTGAACTGCACGGTAACAAGGACTTTGGAATGAGTATCGAAGAAGTCATTGAAGAATGCAAGCTGTTCTATTTTGCTGGTGCAGAAACTACATCAGTGTGGATTCTGTGGACGCTGGTGTTGTTGAGCAGACATCCAGATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTTTGATGGATTAAATCATCTAAAAGTTGTAAGTATTCTTGTTCTGCCATTGGTACAAAAAGCACGTGTGAATTTCTTTTGATCATCTCGTTCATGCTAGAGGAGCATCTCTGTTACAGGTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCAACAAAAGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCTCC</genome_strand>
        <mrna_strand>GCTGGAATCGAATTTTAAAGAAATTGAACTGCACGGAAATAAGGACTTTGGAATGAGCATTGAAGAAGTCATTGAAGAATGCAAGCTATTCTATTTTGCTGGCGCAGAAACTACATCAGTGTGGATTCTGTGGACTCTGGTGTTGTTGAGCAGATATCCAGATTGGCAGGCACGGGCCAGAGAAGAAGTCTTGCAAGTGTTTGGGAGTCGGAAACCAGATTTTGATGGCTTAAATCATCTAAAAGTT...........................................................................................GTAACGATGATCTTGTACGAGTCGTTAAGGCTATATTCCCCAATAACAGTACTTGCCCGACGAATTTATGAAGACATTACGCTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATTATCTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAAACAAGTTCAATCCAGAGAGATTTAGAGAAGGAATATCAAGTGCAACAAAGGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATGTTAGAGGCAAAGATGACTGTGTGTATGATCCTACAAAGCTTCTTTTTTGAATTGTCTNCATCCTACACACATGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E239924" ref_strand="+" ref_description="SGN-E239924 [cLED-29-O15]">
      <seq>attggcaggaacgggccagagaagaagtattgcaagtgcttgggagtcgaaaaccagattttgatggattaaatcatctaaaagttgtaacaatgatcttgtacgagtcgttgaggttatattccccaataacagtacttacgcgacgagtttatgaagacattacactaggagaagtatctctaccaactggtgtgctagtctcattgccaatgattttattgcatcatgataaagatatatggggtgaacatgcacaccaatgataatatcatagagatttagtgaaggaatatcaagtgcagcaaaaggtcaagttacatattttccatttgcttggggtccaagaatatgcattggacaaaattttgccatattagaagcaaagatgactctgtgtatgatcctacaaagcttctcttttgaattgtctacatcctacacacatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="44183" stop="43044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43883" g_stop="43798" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43797" i_stop="43707" i_length="91">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.584" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43706" g_stop="43344" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="451" r_length="365" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E239924" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43883" e_stop="43798"/>
          <exon e_start="43706" e_stop="43344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTTTGATGGATTAAATCATCTAAAAGTTGTAAGTATTCTTGTTCTGCCATTGGTACAAAAAGCACGTGTGAATTTCTTTTGATCATCTCGTTCATGCTAGAGGAGCATCTCTGTTACAGGTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCA-ACCAA-GTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCAACAAAAGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCT</genome_strand>
        <mrna_strand>ATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTTTGATGGATTAAATCATCTAAAAGTT...........................................................................................GTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAACATGCACACCAATGATAATATCATAGAGATTTAGTGAAGGAATATCAAGTGCAGCAAAAGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTACATCCTACACACATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E231270" ref_strand="+" ref_description="SGN-E231270 [cLED-5-D10]">
      <seq>cagattggcaggaacgggccagagaagaagtattgcaagtgcttgggagtcgaaaaccagattttgatggattaaatcatctaaaagttgtaacaatgatcttgtacgagtcgttgaggttatattccccaataacagtacttacgcgacgagtttatgaagacattacactaggagaagtatctctaccaactggtgtgctagtctcattgccaatgattttattgcatcatgataaagatatatggggtgaagatgcaaccaagttcaatccagagagatttagtgaaggaatatcaagtgcaacaaaaggtcaagttacatattttccatttgcttggggtccaagaatatgcattggacaaaattttgccatattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="44186" stop="43115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43886" g_stop="43798" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43797" i_stop="43707" i_length="91">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.584" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43706" g_stop="43415" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="381" r_length="292" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E231270" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43886" e_stop="43798"/>
          <exon e_start="43706" e_stop="43415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTTTGATGGATTAAATCATCTAAAAGTTGTAAGTATTCTTGTTCTGCCATTGGTACAAAAAGCACGTGTGAATTTCTTTTGATCATCTCGTTCATGCTAGAGGAGCATCTCTGTTACAGGTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCAACAAAAGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAG</genome_strand>
        <mrna_strand>CAGATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTTTGATGGATTAAATCATCTAAAAGTT...........................................................................................GTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCAACAAAAGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E455181" ref_strand="+" ref_description="SGN-E455181 [cSTS-25-F23]">
      <seq>atttttgccaacaaagaggaacagaagaatgaaggaaataaaaaaggatgttcggtcctcaattagaggtattatcgataaaagattgaaggcaatggaagctgggaacgcggataatgaggatctattgggcatattgctggaatcgaattttaaagaaattgaactgcacggaaataaggactttggaatgagcatcgaagaagtcattgaagaatgcaagctattctattttgctggcgcagaaactacatcagtgtggattctgtggactctggtgttgttgagcagatatccagattggcaggcacgggccagagaagaagtcttgcaagtgtttgggagtcggaaaccagattttgatggcttaaatcatctaaaagttgtaacgatgatcttgtacgagtcgttaaggctatattccccaataacagtacttgcccgacgaatttatgaagacattacgctaggagaagtatctctaccaactggtgtgctagtctcattgccaattatcttattgcatcatgataaagatatatggggtgaagatgcaaacaagttcaatccagagagatttagagaaggaatatcaagtgcaacaaagggtcaagttacatattttccatttgcttggggtccaagaatatgcattggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="44482" stop="43135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44182" g_stop="43798" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43797" i_stop="43707" i_length="91">
            <donor d_prob="0.916" d_score="0.94"/>
            <acceptor a_prob="0.584" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43706" g_stop="43434" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="658" r_length="273" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E455181" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44182" e_stop="43798"/>
          <exon e_start="43706" e_stop="43434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTACCAACAAAGAGGAACAGAAGAATGAAGGAATTAAAAAATGATGTTCGGTCTTCAATTAGAGGTATTATTGATAAAAGATTGAAGGCAATGGAAGCAGGGAACGCGGATAATGAGGATCTATTGGGCATATTGCTGGAATCGAATTTTAAAGAAATTGAACTGCACGGTAACAAGGACTTTGGAATGAGTATCGAAGAAGTCATTGAAGAATGCAAGCTGTTCTATTTTGCTGGTGCAGAAACTACATCAGTGTGGATTCTGTGGACGCTGGTGTTGTTGAGCAGACATCCAGATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTTTGATGGATTAAATCATCTAAAAGTTGTAAGTATTCTTGTTCTGCCATTGGTACAAAAAGCACGTGTGAATTTCTTTTGATCATCTCGTTCATGCTAGAGGAGCATCTCTGTTACAGGTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCAACAAAAGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGA</genome_strand>
        <mrna_strand>ATTTTTGCCAACAAAGAGGAACAGAAGAATGAAGGAAATAAAAAAGGATGTTCGGTCCTCAATTAGAGGTATTATCGATAAAAGATTGAAGGCAATGGAAGCTGGGAACGCGGATAATGAGGATCTATTGGGCATATTGCTGGAATCGAATTTTAAAGAAATTGAACTGCACGGAAATAAGGACTTTGGAATGAGCATCGAAGAAGTCATTGAAGAATGCAAGCTATTCTATTTTGCTGGCGCAGAAACTACATCAGTGTGGATTCTGTGGACTCTGGTGTTGTTGAGCAGATATCCAGATTGGCAGGCACGGGCCAGAGAAGAAGTCTTGCAAGTGTTTGGGAGTCGGAAACCAGATTTTGATGGCTTAAATCATCTAAAAGTT...........................................................................................GTAACGATGATCTTGTACGAGTCGTTAAGGCTATATTCCCCAATAACAGTACTTGCCCGACGAATTTATGAAGACATTACGCTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATTATCTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAAACAAGTTCAATCCAGAGAGATTTAGAGAAGGAATATCAAGTGCAACAAAGGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E239835" ref_strand="+" ref_description="SGN-E239835 [cLED-29-J13]">
      <seq>cagattggcaggaacgggccagagaagaagtattgcaagtgcttgggagtcgaaaaccagattttgatggattaaatcatctaaaagttgtaacaatgatcttgtacgagtcgttgaggttatattccccaataacagtacttacgcgacgagtttatgaagacattacactaggagaagtatctctaccaactggtgtgctagtctcattgccaatgattttattgcatcatgataaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="44186" stop="43254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43886" g_stop="43798" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43797" i_stop="43707" i_length="91">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.584" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43706" g_stop="43554" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="242" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E239835" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43886" e_stop="43798"/>
          <exon e_start="43706" e_stop="43554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTTTGATGGATTAAATCATCTAAAAGTTGTAAGTATTCTTGTTCTGCCATTGGTACAAAAAGCACGTGTGAATTTCTTTTGATCATCTCGTTCATGCTAGAGGAGCATCTCTGTTACAGGTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGAT</genome_strand>
        <mrna_strand>CAGATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTTTGATGGATTAAATCATCTAAAAGTT...........................................................................................GTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E577061" ref_strand="+" ref_description="SGN-E577061 [32438]">
      <seq>attttctcgaagttatacgctcagtttatatcccaggatgttagatttttgccaacaaagaggaacagaagaatgaaggaaataaaaaaggatgttcggtcctcaattagaggtattatcgataaaagattgaaggcaatggaagctgggaatgcggataatgaggatctattgggcatattgctggaatcaaattttaaagaaattgaactgcacggttacaaggactttggaatgagtatcgacagaagtcattgaagactgcaagctattctattttgctggcgcagaaactacatcagtgtggattctgtggactctggtgtgttgagcagatatccagattggcaggcacgggccagagaagaagtcttgcaagtgtttgggagtcggaaaccagatttctgatggattaaatcatctaaaagttgtaacgatgatcttcaaacgagtcattaaggctatattccccgataacagtactttcacgacgaattatgaagacattacgctaggagaagtatctctaccaaatggtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="44620" stop="43296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44320" g_stop="44278" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44277" i_stop="44183" i_length="95">
            <donor d_prob="0.000" d_score="0.93"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44182" g_stop="43798" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="430" r_length="386" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43797" i_stop="43707" i_length="91">
            <donor d_prob="0.916" d_score="0.92"/>
            <acceptor a_prob="0.584" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43706" g_stop="43596" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="541" r_length="111" r_score="0.865"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E577061" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44320" e_stop="44278"/>
          <exon e_start="44182" e_stop="43798"/>
          <exon e_start="43706" e_stop="43596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCTCGAAGTTATACGCTCAGTTTATATCCCAGGATG-GAGGTAAACTTATTGCTCCAAAGAATCCGAAAAATGTAGCTATAGGAAATGATTAGTTCTAATATTTGTTAATACGTTTTGGTTTTGTGTTTTCAAAGATTTTTACCAACAAAGAGGAACAGAAGAATGAAGGAATTAAAAAATGATGTTCGGTCTTCAATTAGAGGTATTATTGATAAAAGATTGAAGGCAATGGAAGCAGGGAACGCGGATAATGAGGATCTATTGGGCATATTGCTGGAATCGAATTTTAAAGAAATTGAACTGCACGGTAACAAGGACTTTGGAATGAGTATCGA-AGAAGTCATTGAAGAATGCAAGCTGTTCTATTTTGCTGGTGCAGAAACTACATCAGTGTGGATTCTGTGGACGCTGGTGTTGTTGAGCAGACATCCAGATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTT-TGATGGATTAAATCATCTAAAAGTTGTAAGTATTCTTGTTCTGCCATTGGTACAAAAAGCACGTGTGAATTTCTTTTGATCATCTCGTTCATGCTAGAGGAGCATCTCTGTTACAGGTAACAATGATCTT-GTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTG</genome_strand>
        <mrna_strand>ATTTTCTCGAAGTTATACGCTCAGTTTATATCCCAGGATGTTAG...............................................................................................ATTTTTGCCAACAAAGAGGAACAGAAGAATGAAGGAAATAAAAAAGGATGTTCGGTCCTCAATTAGAGGTATTATCGATAAAAGATTGAAGGCAATGGAAGCTGGGAATGCGGATAATGAGGATCTATTGGGCATATTGCTGGAATCAAATTTTAAAGAAATTGAACTGCACGGTTACAAGGACTTTGGAATGAGTATCGACAGAAGTCATTGAAGACTGCAAGCTATTCTATTTTGCTGGCGCAGAAACTACATCAGTGTGGATTCTGTGGACTCTGGTG-TGTTGAGCAGATATCCAGATTGGCAGGCACGGGCCAGAGAAGAAGTCTTGCAAGTGTTTGGGAGTCGGAAACCAGATTTCTGATGGATTAAATCATCTAAAAGTT...........................................................................................GTAACGATGATCTTCAAACGAGTCATTAAGGCTATATTCCCCGATAACAGTACTTTCACGACGA-ATTATGAAGACATTACGCTAGGAGAAGTATCTCTACCAAATGGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E401983" ref_strand="+" ref_description="SGN-E401983 [PPC-5-N4]">
      <seq>gttttgtgtttcataaaacaatttcaaagatttttgccaacaaagaggaacagaagaatgaaggaaataaaaaaggatgttcggtcctcaattagaggtattatcgataaaagattgaaggcaatggaagctgggaatgcggataatgaggatctattgggcatattgctggaatcaaattttaaagaaattgaactgcacggaaacaaggactttggaatgagtatcgaagaagtcattgaagaatgcaagctattctattttgctggcgcagaaactacatcagtgtggattctgtggactctggtgttgttgagcagatatccagattggcaggcacgggccagagaagaagtcttgcaagtgtttgggagtcggaaaccagattttgatggattaaatcatctaaaagttgtaacgatgatcttaaacgagtcattaaggctatattccccgataacagtactttcacgacgaatttatgaagacattacgctaggagaagtatctctaccaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="44490" stop="43302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44182" g_stop="43798" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="414" r_length="385" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43797" i_stop="43707" i_length="91">
            <donor d_prob="0.916" d_score="0.96"/>
            <acceptor a_prob="0.584" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43706" g_stop="43602" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="519" r_length="105" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E401983" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44182" e_stop="43798"/>
          <exon e_start="43706" e_stop="43602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTACCAACAAAGAGGAACAGAAGAATGAAGGAATTAAAAAATGATGTTCGGTCTTCAATTAGAGGTATTATTGATAAAAGATTGAAGGCAATGGAAGCAGGGAACGCGGATAATGAGGATCTATTGGGCATATTGCTGGAATCGAATTTTAAAGAAATTGAACTGCACGGTAACAAGGACTTTGGAATGAGTATCGAAGAAGTCATTGAAGAATGCAAGCTGTTCTATTTTGCTGGTGCAGAAACTACATCAGTGTGGATTCTGTGGACGCTGGTGTTGTTGAGCAGACATCCAGATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTTTGATGGATTAAATCATCTAAAAGTTGTAAGTATTCTTGTTCTGCCATTGGTACAAAAAGCACGTGTGAATTTCTTTTGATCATCTCGTTCATGCTAGAGGAGCATCTCTGTTACAGGTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACT</genome_strand>
        <mrna_strand>ATTTTTGCCAACAAAGAGGAACAGAAGAATGAAGGAAATAAAAAAGGATGTTCGGTCCTCAATTAGAGGTATTATCGATAAAAGATTGAAGGCAATGGAAGCTGGGAATGCGGATAATGAGGATCTATTGGGCATATTGCTGGAATCAAATTTTAAAGAAATTGAACTGCACGGAAACAAGGACTTTGGAATGAGTATCGAAGAAGTCATTGAAGAATGCAAGCTATTCTATTTTGCTGGCGCAGAAACTACATCAGTGTGGATTCTGTGGACTCTGGTGTTGTTGAGCAGATATCCAGATTGGCAGGCACGGGCCAGAGAAGAAGTCTTGCAAGTGTTTGGGAGTCGGAAACCAGATTTTGATGGATTAAATCATCTAAAAGTT...........................................................................................GTAACGATGATCTTAAACGAGTCATTAAGGCTATATTCCCCGATAACAGTACTTTCACGACGAATTTATGAAGACATTACGCTAGGAGAAGTATCTCTACCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E207353" ref_strand="+" ref_description="SGN-E207353 [cLEC-36-G19]">
      <seq>tcgagttgaaggctctcatgagatagatgtatggcctcacctgcagcaattgacttgtgacgtgatctctcggacagcttttggcagtagttatgaagaaggtagaaagatttttgaacttcaaaaggaacaagctcagcattttctcgaagttatacgctcagtttatatcccaggatggagatttttaccaacaaagaggaacagaagaatgaaggaattaaaaaatgatgttcggtcttcaattagaggtattattgataaaagattgaaggcaatggaagcagggaacgcggataatgaggatctattgggcatattgctggaatcgaattttaaagaaattgaactgcacggtaacaaggactttggaatgagtatcgaagaagtcattgaagaatgcaagctgttctattttgctggtgcagaaactacatcagtgtggattctgtggacgctggtgttgttgagcagacatccagattggcaggaacgggccagagaagaagtattgcaagtgcttgggagtcgaaaaccagattttgatggattaaatcatctaaaagttgtaacaatgatcttgtacgagtcgttgaggttatattccccaataacagtacttacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="44760" stop="43350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44460" g_stop="44278" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44277" i_stop="44183" i_length="95">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44182" g_stop="43798" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="568" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43797" i_stop="43707" i_length="91">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.584" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43706" g_stop="43650" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="625" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E207353" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44460" e_stop="44278"/>
          <exon e_start="44182" e_stop="43798"/>
          <exon e_start="43706" e_stop="43650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGTTGAAGGCTCTCATGAGATAGATGTATGGCCTCACCTGCAGCAATTGACTTGTGACGTGATCTCTCGGACAGCTTTTGGCAGTAGTTATGAAGAAGGTAGAAAGATTTTTGAACTTCAAAAGGAACAAGCTCAGCATTTTCTCGAAGTTATACGCTCAGTTTATATCCCAGGATGGAGGTAAACTTATTGCTCCAAAGAATCCGAAAAATGTAGCTATAGGAAATGATTAGTTCTAATATTTGTTAATACGTTTTGGTTTTGTGTTTTCAAAGATTTTTACCAACAAAGAGGAACAGAAGAATGAAGGAATTAAAAAATGATGTTCGGTCTTCAATTAGAGGTATTATTGATAAAAGATTGAAGGCAATGGAAGCAGGGAACGCGGATAATGAGGATCTATTGGGCATATTGCTGGAATCGAATTTTAAAGAAATTGAACTGCACGGTAACAAGGACTTTGGAATGAGTATCGAAGAAGTCATTGAAGAATGCAAGCTGTTCTATTTTGCTGGTGCAGAAACTACATCAGTGTGGATTCTGTGGACGCTGGTGTTGTTGAGCAGACATCCAGATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTTTGATGGATTAAATCATCTAAAAGTTGTAAGTATTCTTGTTCTGCCATTGGTACAAAAAGCACGTGTGAATTTCTTTTGATCATCTCGTTCATGCTAGAGGAGCATCTCTGTTACAGGTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACG</genome_strand>
        <mrna_strand>TCGAGTTGAAGGCTCTCATGAGATAGATGTATGGCCTCACCTGCAGCAATTGACTTGTGACGTGATCTCTCGGACAGCTTTTGGCAGTAGTTATGAAGAAGGTAGAAAGATTTTTGAACTTCAAAAGGAACAAGCTCAGCATTTTCTCGAAGTTATACGCTCAGTTTATATCCCAGGATGGAG...............................................................................................ATTTTTACCAACAAAGAGGAACAGAAGAATGAAGGAATTAAAAAATGATGTTCGGTCTTCAATTAGAGGTATTATTGATAAAAGATTGAAGGCAATGGAAGCAGGGAACGCGGATAATGAGGATCTATTGGGCATATTGCTGGAATCGAATTTTAAAGAAATTGAACTGCACGGTAACAAGGACTTTGGAATGAGTATCGAAGAAGTCATTGAAGAATGCAAGCTGTTCTATTTTGCTGGTGCAGAAACTACATCAGTGTGGATTCTGTGGACGCTGGTGTTGTTGAGCAGACATCCAGATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTTTGATGGATTAAATCATCTAAAAGTT...........................................................................................GTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E200105" ref_strand="+" ref_description="SGN-E200105 [cLEC-8-O8]">
      <seq>aaagaggaacagaagaatgaaggaattaaaaaatgatgttcggtcttcaattagaggtattattgataaaagattgaaggcaatggaagcagggaacgcggataatgaggatctattgggcatattgctggaatcgaattttaaagaaattgaactgcacggtaacaaggactttggaatgagtatcgaagaagtcattgaagaatgcaagctgttctattttgctggtgcagaaactacatcagtgtggattctgtggacgctggtgttgttgagcagacatccagattggcaggaacgggccagagaagaagtattgcaagtgcttgggagtcgaaaaccagattttgatggattaaatcatctaaaagttgtaagtattcttgttctgccattggtacaaaaagcacgtgtgaatttcttttgatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="44470" stop="43439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44170" g_stop="43739" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E200105" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44170" e_stop="43739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGGAACAGAAGAATGAAGGAATTAAAAAATGATGTTCGGTCTTCAATTAGAGGTATTATTGATAAAAGATTGAAGGCAATGGAAGCAGGGAACGCGGATAATGAGGATCTATTGGGCATATTGCTGGAATCGAATTTTAAAGAAATTGAACTGCACGGTAACAAGGACTTTGGAATGAGTATCGAAGAAGTCATTGAAGAATGCAAGCTGTTCTATTTTGCTGGTGCAGAAACTACATCAGTGTGGATTCTGTGGACGCTGGTGTTGTTGAGCAGACATCCAGATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTTTGATGGATTAAATCATCTAAAAGTTGTAAGTATTCTTGTTCTGCCATTGGTACAAAAAGCACGTGTGAATTTCTTTTGATCATC</genome_strand>
        <mrna_strand>AAAGAGGAACAGAAGAATGAAGGAATTAAAAAATGATGTTCGGTCTTCAATTAGAGGTATTATTGATAAAAGATTGAAGGCAATGGAAGCAGGGAACGCGGATAATGAGGATCTATTGGGCATATTGCTGGAATCGAATTTTAAAGAAATTGAACTGCACGGTAACAAGGACTTTGGAATGAGTATCGAAGAAGTCATTGAAGAATGCAAGCTGTTCTATTTTGCTGGTGCAGAAACTACATCAGTGTGGATTCTGTGGACGCTGGTGTTGTTGAGCAGACATCCAGATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTTTGATGGATTAAATCATCTAAAAGTTGTAAGTATTCTTGTTCTGCCATTGGTACAAAAAGCACGTGTGAATTTCTTTTGATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E464888" ref_strand="+" ref_description="SGN-E464888 [cPRO-19-M6]">
      <seq>ctcgaagttatacgctcagtttatatcccaggatggagatttttgccaacaaagaggaacagaagaatgaaggaaataaaaaaggatgttcggtcctcaattagaggtattatcgataaaagattgaaggcaatggaagctgggaacgcggataatgaggatctattgggcatattgctggaatcgaattttaaagaaattgaactgcacggaaataaggactttggaatgagcatccaagaagtcattgaagaatgcaagctattctattttgctggcgcagaaactacatcagtgtggattctgtggactctggtgttgttgagcagatatccagattggcaggcacgggccagagaaaaaatcttgcaagtgtttgggagtcggaaaacagattttgatggcttaaatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="44615" stop="43506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44315" g_stop="44278" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44277" i_stop="44183" i_length="95">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44182" g_stop="43806" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="415" r_length="377" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E464888" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44315" e_stop="44278"/>
          <exon e_start="44182" e_stop="43806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGAAGTTATACGCTCAGTTTATATCCCAGGATGGAGGTAAACTTATTGCTCCAAAGAATCCGAAAAATGTAGCTATAGGAAATGATTAGTTCTAATATTTGTTAATACGTTTTGGTTTTGTGTTTTCAAAGATTTTTACCAACAAAGAGGAACAGAAGAATGAAGGAATTAAAAAATGATGTTCGGTCTTCAATTAGAGGTATTATTGATAAAAGATTGAAGGCAATGGAAGCAGGGAACGCGGATAATGAGGATCTATTGGGCATATTGCTGGAATCGAATTTTAAAGAAATTGAACTGCACGGTAACAAGGACTTTGGAATGAGTATCGAAGAAGTCATTGAAGAATGCAAGCTGTTCTATTTTGCTGGTGCAGAAACTACATCAGTGTGGATTCTGTGGACGCTGGTGTTGTTGAGCAGACATCCAGATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTTTGATGGATTAAATCATC</genome_strand>
        <mrna_strand>CTCGAAGTTATACGCTCAGTTTATATCCCAGGATGGAG...............................................................................................ATTTTTGCCAACAAAGAGGAACAGAAGAATGAAGGAAATAAAAAAGGATGTTCGGTCCTCAATTAGAGGTATTATCGATAAAAGATTGAAGGCAATGGAAGCTGGGAACGCGGATAATGAGGATCTATTGGGCATATTGCTGGAATCGAATTTTAAAGAAATTGAACTGCACGGAAATAAGGACTTTGGAATGAGCATCCAAGAAGTCATTGAAGAATGCAAGCTATTCTATTTTGCTGGCGCAGAAACTACATCAGTGTGGATTCTGTGGACTCTGGTGTTGTTGAGCAGATATCCAGATTGGCAGGCACGGGCCAGAGAAAAAATCTTGCAAGTGTTTGGGAGTCGGAAAACAGATTTTGATGGCTTAAATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E289950" ref_strand="+" ref_description="SGN-E289950 [cLET-9-L7]">
      <seq>tgaaggcaatggaagcagggaacgcggataatgaggatctattgggcatattgctggaatcgaattttaaagaaattgaactgcacggtaacaaggactttggaatgagtatcgaagaagtcattgaagaatgcaagctgttctattttgctggtgcagaaactacatcagtgtggattctgtggacgctggtgttgttgagcagacatccagattggcaggaacgggccagagaagaagtattgcaagtgcttgggagtcgaaaaccagattttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="44396" stop="43519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44096" g_stop="43819" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E289950" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44096" e_stop="43819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGGCAATGGAAGCAGGGAACGCGGATAATGAGGATCTATTGGGCATATTGCTGGAATCGAATTTTAAAGAAATTGAACTGCACGGTAACAAGGACTTTGGAATGAGTATCGAAGAAGTCATTGAAGAATGCAAGCTGTTCTATTTTGCTGGTGCAGAAACTACATCAGTGTGGATTCTGTGGACGCTGGTGTTGTTGAGCAGACATCCAGATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTTTGAT</genome_strand>
        <mrna_strand>TGAAGGCAATGGAAGCAGGGAACGCGGATAATGAGGATCTATTGGGCATATTGCTGGAATCGAATTTTAAAGAAATTGAACTGCACGGTAACAAGGACTTTGGAATGAGTATCGAAGAAGTCATTGAAGAATGCAAGCTGTTCTATTTTGCTGGTGCAGAAACTACATCAGTGTGGATTCTGTGGACGCTGGTGTTGTTGAGCAGACATCCAGATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E575312" ref_strand="+" ref_description="SGN-E575312 [34917]">
      <seq>tatggttccagctttttacttgagctgtagtgagatgctgagcaaatgggaagaggctgttcaagttgaaggctctcatgagatagatgtatggccgcacctgcagcaattgacttgtgatgtgatctctcggacagcttttggcagtagttatgaagaaggtagaaagatttttgaacttcaacaggaacaagctcagcattttctcgaagttatacgctcagtttatatcccaggatggagatttttgccacacaaagaggaacagaagaatgaaggaaataaaaaaggatgttcggtcctcaattagaggtattatcgataaaagattgaaggcaatggaagctgggaatgcggataatgaggatctattgggcatattgctggaatcaaattttaaagaaattgaactgcacggaaacaaggactttggaatgagtatcgaagaagtcattgaagactgcaagctattctattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="44820" stop="43649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44520" g_stop="44278" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44277" i_stop="44183" i_length="95">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44182" g_stop="43949" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="478" r_length="235" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E575312" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E575312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44520" e_stop="44278"/>
          <exon e_start="44182" e_stop="43949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGCTTCCAGCTTTTTACTTGAGCTGTAGTGAGATGCTGAGCAAATGGGAAGACGTTGTTCGAGTTGAAGGCTCTCATGAGATAGATGTATGGCCTCACCTGCAGCAATTGACTTGTGACGTGATCTCTCGGACAGCTTTTGGCAGTAGTTATGAAGAAGGTAGAAAGATTTTTGAACTTCAAAAGGAACAAGCTCAGCATTTTCTCGAAGTTATACGCTCAGTTTATATCCCAGGATGGAGGTAAACTTATTGCTCCAAAGAATCCGAAAAATGTAGCTATAGGAAATGATTAGTTCTAATATTTGTTAATACGTTTTGGTTTTGTGTTTTCAAAGATTTTTACCA-ACAAAGAGGAACAGAAGAATGAAGGAATTAAAAAATGATGTTCGGTCTTCAATTAGAGGTATTATTGATAAAAGATTGAAGGCAATGGAAGCAGGGAACGCGGATAATGAGGATCTATTGGGCATATTGCTGGAATCGAATTTTAAAGAAATTGAACTGCACGGTAACAAGGACTTTGGAATGAGTATCGAAGAAGTCATTGAAGAATGCAAGCTGTTCTATTT</genome_strand>
        <mrna_strand>TATGGTTCCAGCTTTTTACTTGAGCTGTAGTGAGATGCTGAGCAAATGGGAAGAGGCTGTTCAAGTTGAAGGCTCTCATGAGATAGATGTATGGCCGCACCTGCAGCAATTGACTTGTGATGTGATCTCTCGGACAGCTTTTGGCAGTAGTTATGAAGAAGGTAGAAAGATTTTTGAACTTCAACAGGAACAAGCTCAGCATTTTCTCGAAGTTATACGCTCAGTTTATATCCCAGGATGGAG...............................................................................................ATTTTTGCCACACAAAGAGGAACAGAAGAATGAAGGAAATAAAAAAGGATGTTCGGTCCTCAATTAGAGGTATTATCGATAAAAGATTGAAGGCAATGGAAGCTGGGAATGCGGATAATGAGGATCTATTGGGCATATTGCTGGAATCAAATTTTAAAGAAATTGAACTGCACGGAAACAAGGACTTTGGAATGAGTATCGAAGAAGTCATTGAAGACTGCAAGCTATTCTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E394952" ref_strand="+" ref_description="SGN-E394952 [TUS-34-E20]">
      <seq>tgtatgtagtttgtctcaactttcttcgaattcgatgaaattggaaaaaatgttttacatggatgggtccaagaccacaagtattgatcatggaccctgagcttataaaggaagtactctcgaaaacttattcgtatcaaaagcctcgtggaaatccattaggcaccttatttgtacaaggattagttagctatgagaaagacaaatgggccaaacatagaaaaatcatcaatcctgcgttccatctagagaagttaaagcatatgcttccagctgaagtgagatgctgagcaaatgggaagacattgttccagttgaaggctctcatgagatagatgtatggcctcacctgcagcagttgactagtgatgtgatctctcggacagcttttggcagtagttatgaagaaggtagaaagatatttgaacttcaaaacgaacaagctcagcatttcattgaagctatacgctcagtttatatcccaggagggagatttttgccaacaaagaggagcagaagagtgaaggaaataaacaaggatgtttggtccttaattagaggtattattaataaaagattgaaagcaatggaagctgggtacgcccataatgaggatctattaggcatattgctggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="45551" stop="43737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45251" g_stop="45034" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="260" r_length="218" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45033" i_stop="44510" i_length="524">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44509" g_stop="44278" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="492" r_length="232" r_score="0.914"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44277" i_stop="44183" i_length="95">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.992" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44182" g_stop="44037" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="638" r_length="146" r_score="0.890"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E394952" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45251" e_stop="45034"/>
          <exon e_start="44509" e_stop="44278"/>
          <exon e_start="44182" e_stop="44037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAAATGTTTTACATGGATGGGTCCAAGACCACAAATACTAATCATGGATCCTGAGCTTATAAAGGAAGTACTTTCGAAAACCTACGTGTATCAAAAGCCTCATGGAAATCCGTTAGGCACGTTATTTGTACAAGGATTAGTAAGCTATGAGAAAGATAAATGGGCCAAACATAGAAAAATCATCAATCCCGCGTTCCATCTAGAGAAGTTAAAGGTTTGTCATTCAACTTCGTGATTTGCCTTCCTTATCGTTCAATCTTAACTTTTATGTCATATGACTATTTCGAGTAATGTGGTATCTGCTGCCTGACTTGATGTAGACAATAGTGGTTCTATAGGGACGCGAATCTCACCTGGATCAATGATTCAATGTTCTAGATTGTTCTTCCACCAATCGATAATATGTTCACTCTTGCTTCTTGTATGTTCCACATATGGCTATATTGAGTGATTTCTGCTATACCTTAGCTTGAGTTAGACAATCCGAGAGTGAATCTATGGTTCAAAGAAGTCGAATATTGTCTGGATCATTATTTGTCAGGACGCTCTTTGCGTAAGTTTCTTGGCTTGGACAGAGTACGTGTTTAGTCCATGTTGTGTTCCTACAGACTAAGTTCAATTTTATTTGATATATTTACTATATGGTGATTGAATATGTGTTACTAATTATGTTCAAAGTGCAAGTGTTATTGACGTTTTCCCTGATTCACTATTTTCTCGAACAGCATATGCTTCCAGCTTTTTACTTGAGCTGTAGTGAGATGCTGAGCAAATGGGAAGACGTTGTTCGAGTTGAAGGCTCTCATGAGATAGATGTATGGCCTCACCTGCAGCAATTGACTTGTGACGTGATCTCTCGGACAGCTTTTGGCAGTAGTTATGAAGAAGGTAGAAAGATTTTTGAACTTCAAAAGGAACAAGCTCAGCATTTTCTCGAAGTTATACGCTCAGTTTATATCCCAGGATGGAGGTAAACTTATTGCTCCAAAGAATCCGAAAAATGTAGCTATAGGAAATGATTAGTTCTAATATTTGTTAATACGTTTTGGTTTTGTGTTTTCAAAGATTTTTACCAACAAAGAGGAACAGAAGAATGAAGGAATTAAAAAATGATGTTCGGTCTTCAATTAGAGGTATTATTGATAAAAGATTGAAGGCAATGGAAGCAGGGAACGCGGATAATGAGGATCTATTGGGCATATTGCTGGAAT</genome_strand>
        <mrna_strand>GGAAAAAATGTTTTACATGGATGGGTCCAAGACCACAAGTATTGATCATGGACCCTGAGCTTATAAAGGAAGTACTCTCGAAAACTTATTCGTATCAAAAGCCTCGTGGAAATCCATTAGGCACCTTATTTGTACAAGGATTAGTTAGCTATGAGAAAGACAAATGGGCCAAACATAGAAAAATCATCAATCCTGCGTTCCATCTAGAGAAGTTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGCTTCCAGCTGAAGTGAGATGCTGAGCAAATGGGAAGACATTGTTCCAGTTGAAGGCTCTCATGAGATAGATGTATGGCCTCACCTGCAGCAGTTGACTAGTGATGTGATCTCTCGGACAGCTTTTGGCAGTAGTTATGAAGAAGGTAGAAAGATATTTGAACTTCAAAACGAACAAGCTCAGCATTTCATTGAAGCTATACGCTCAGTTTATATCCCAGGAGGGAG...............................................................................................ATTTTTGCCAACAAAGAGGAGCAGAAGAGTGAAGGAAATAAACAAGGATGTTTGGTCCTTAATTAGAGGTATTATTAATAAAAGATTGAAAGCAATGGAAGCTGGGTACGCCCATAATGAGGATCTATTAGGCATATTGCTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E244682" ref_strand="+" ref_description="SGN-E244682 [cLED-38-C8]">
      <seq>ggaaaaaatgttttacatggatgggtccaagaccacaaatactaatcatggatcctgagcttataaaggaagtactttcgaaaacctacgtgtatcaaaagcctcatggaaatccgttaggcacgttatttgtacaaggattagtaagctatgagaaagataaatgggccaaacatagaaaaatcatcaatcccgcgttccatctagagaagttaaagcatatgcttccagctttttacttgagctgtagtgagatgctgagcaaatgggaagacgttgttcgagttgaaggctctcatgagatagatgtatggcctcacctgcagcaattgacttgtgacgtgatctctcggacagcttttggcagtanttatgaagaaggtagaaagatttttgaacttcaaaaggaacaagctcagcattttctcgaagttatacgctcagtttatatcccaggatggagatttttaccaacaaagaggaacagaagaatgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="45551" stop="43849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45251" g_stop="45034" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45033" i_stop="44523" i_length="511">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.210" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44522" g_stop="44278" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="463" r_length="245" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44277" i_stop="44183" i_length="95">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44182" g_stop="44149" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="497" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E244682" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45251" e_stop="45034"/>
          <exon e_start="44522" e_stop="44278"/>
          <exon e_start="44182" e_stop="44149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAAATGTTTTACATGGATGGGTCCAAGACCACAAATACTAATCATGGATCCTGAGCTTATAAAGGAAGTACTTTCGAAAACCTACGTGTATCAAAAGCCTCATGGAAATCCGTTAGGCACGTTATTTGTACAAGGATTAGTAAGCTATGAGAAAGATAAATGGGCCAAACATAGAAAAATCATCAATCCCGCGTTCCATCTAGAGAAGTTAAAGGTTTGTCATTCAACTTCGTGATTTGCCTTCCTTATCGTTCAATCTTAACTTTTATGTCATATGACTATTTCGAGTAATGTGGTATCTGCTGCCTGACTTGATGTAGACAATAGTGGTTCTATAGGGACGCGAATCTCACCTGGATCAATGATTCAATGTTCTAGATTGTTCTTCCACCAATCGATAATATGTTCACTCTTGCTTCTTGTATGTTCCACATATGGCTATATTGAGTGATTTCTGCTATACCTTAGCTTGAGTTAGACAATCCGAGAGTGAATCTATGGTTCAAAGAAGTCGAATATTGTCTGGATCATTATTTGTCAGGACGCTCTTTGCGTAAGTTTCTTGGCTTGGACAGAGTACGTGTTTAGTCCATGTTGTGTTCCTACAGACTAAGTTCAATTTTATTTGATATATTTACTATATGGTGATTGAATATGTGTTACTAATTATGTTCAAAGTGCAAGTGTTATTGACGTTTTCCCTGATTCACTATTTTCTCGAACAGCATATGCTTCCAGCTTTTTACTTGAGCTGTAGTGAGATGCTGAGCAAATGGGAAGACGTTGTTCGAGTTGAAGGCTCTCATGAGATAGATGTATGGCCTCACCTGCAGCAATTGACTTGTGACGTGATCTCTCGGACAGCTTTTGGCAGTAGTTATGAAGAAGGTAGAAAGATTTTTGAACTTCAAAAGGAACAAGCTCAGCATTTTCTCGAAGTTATACGCTCAGTTTATATCCCAGGATGGAGGTAAACTTATTGCTCCAAAGAATCCGAAAAATGTAGCTATAGGAAATGATTAGTTCTAATATTTGTTAATACGTTTTGGTTTTGTGTTTTCAAAGATTTTTACCAACAAAGAGGAACAGAAGAATGAAG</genome_strand>
        <mrna_strand>GGAAAAAATGTTTTACATGGATGGGTCCAAGACCACAAATACTAATCATGGATCCTGAGCTTATAAAGGAAGTACTTTCGAAAACCTACGTGTATCAAAAGCCTCATGGAAATCCGTTAGGCACGTTATTTGTACAAGGATTAGTAAGCTATGAGAAAGATAAATGGGCCAAACATAGAAAAATCATCAATCCCGCGTTCCATCTAGAGAAGTTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGCTTCCAGCTTTTTACTTGAGCTGTAGTGAGATGCTGAGCAAATGGGAAGACGTTGTTCGAGTTGAAGGCTCTCATGAGATAGATGTATGGCCTCACCTGCAGCAATTGACTTGTGACGTGATCTCTCGGACAGCTTTTGGCAGTANTTATGAAGAAGGTAGAAAGATTTTTGAACTTCAAAAGGAACAAGCTCAGCATTTTCTCGAAGTTATACGCTCAGTTTATATCCCAGGATGGAG...............................................................................................ATTTTTACCAACAAAGAGGAACAGAAGAATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E244704" ref_strand="+" ref_description="SGN-E244704 [cLED-38-K6]">
      <seq>ggaaaaaatgttttacatggatgggtccaagaccacaaatactaatcatggatcctgagcttataaaggaagtactttcgaaaacctacgtgtatcaaaagcctcatggaaatccgttaggcacgttatttgtacaaggattagtaagctatgagaaagataaatgggccaaacatagaaaaatcatcaatcccgcgttccatctagagaagttaaagcatatgcttccagctttttacttgagctgtagtgagatgctgagcaaatgggaagacgttgttcgagttgaaggctctcatgagatagatgtatggcctcacctgcagcaattgacttgtgacgtgatctctcggacagcttttggcagtagttatgaagaaggtagaaagatttttgaacttcaaaaggaacaagctcagcattttctcgaagttatacgctcagtttatatcccaggatggagattttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="45551" stop="43976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45251" g_stop="45034" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45033" i_stop="44523" i_length="511">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.210" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44522" g_stop="44278" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="463" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44277" i_stop="44183" i_length="95">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44182" g_stop="44176" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="470" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E244704" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45251" e_stop="45034"/>
          <exon e_start="44522" e_stop="44278"/>
          <exon e_start="44182" e_stop="44176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAAATGTTTTACATGGATGGGTCCAAGACCACAAATACTAATCATGGATCCTGAGCTTATAAAGGAAGTACTTTCGAAAACCTACGTGTATCAAAAGCCTCATGGAAATCCGTTAGGCACGTTATTTGTACAAGGATTAGTAAGCTATGAGAAAGATAAATGGGCCAAACATAGAAAAATCATCAATCCCGCGTTCCATCTAGAGAAGTTAAAGGTTTGTCATTCAACTTCGTGATTTGCCTTCCTTATCGTTCAATCTTAACTTTTATGTCATATGACTATTTCGAGTAATGTGGTATCTGCTGCCTGACTTGATGTAGACAATAGTGGTTCTATAGGGACGCGAATCTCACCTGGATCAATGATTCAATGTTCTAGATTGTTCTTCCACCAATCGATAATATGTTCACTCTTGCTTCTTGTATGTTCCACATATGGCTATATTGAGTGATTTCTGCTATACCTTAGCTTGAGTTAGACAATCCGAGAGTGAATCTATGGTTCAAAGAAGTCGAATATTGTCTGGATCATTATTTGTCAGGACGCTCTTTGCGTAAGTTTCTTGGCTTGGACAGAGTACGTGTTTAGTCCATGTTGTGTTCCTACAGACTAAGTTCAATTTTATTTGATATATTTACTATATGGTGATTGAATATGTGTTACTAATTATGTTCAAAGTGCAAGTGTTATTGACGTTTTCCCTGATTCACTATTTTCTCGAACAGCATATGCTTCCAGCTTTTTACTTGAGCTGTAGTGAGATGCTGAGCAAATGGGAAGACGTTGTTCGAGTTGAAGGCTCTCATGAGATAGATGTATGGCCTCACCTGCAGCAATTGACTTGTGACGTGATCTCTCGGACAGCTTTTGGCAGTAGTTATGAAGAAGGTAGAAAGATTTTTGAACTTCAAAAGGAACAAGCTCAGCATTTTCTCGAAGTTATACGCTCAGTTTATATCCCAGGATGGAGGTAAACTTATTGCTCCAAAGAATCCGAAAAATGTAGCTATAGGAAATGATTAGTTCTAATATTTGTTAATACGTTTTGGTTTTGTGTTTTCAAAGATTTTTA</genome_strand>
        <mrna_strand>GGAAAAAATGTTTTACATGGATGGGTCCAAGACCACAAATACTAATCATGGATCCTGAGCTTATAAAGGAAGTACTTTCGAAAACCTACGTGTATCAAAAGCCTCATGGAAATCCGTTAGGCACGTTATTTGTACAAGGATTAGTAAGCTATGAGAAAGATAAATGGGCCAAACATAGAAAAATCATCAATCCCGCGTTCCATCTAGAGAAGTTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGCTTCCAGCTTTTTACTTGAGCTGTAGTGAGATGCTGAGCAAATGGGAAGACGTTGTTCGAGTTGAAGGCTCTCATGAGATAGATGTATGGCCTCACCTGCAGCAATTGACTTGTGACGTGATCTCTCGGACAGCTTTTGGCAGTAGTTATGAAGAAGGTAGAAAGATTTTTGAACTTCAAAAGGAACAAGCTCAGCATTTTCTCGAAGTTATACGCTCAGTTTATATCCCAGGATGGAG...............................................................................................ATTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E549780" ref_strand="+" ref_description="SGN-E549780 [TUS-6-P5]">
      <seq>cttttcttggaaactaggttgcagttatggtgcagctttgtttcagtaattaaccagaattatgatgagatttattatttgggagtacattttcctaccaaaagatttagaatcctagggctgagatggataggactaagaaaacccgggttgtgagaagaactgtttgtcaaacttggatttgctgctgtaattctatgtttttttttagagaattctatcaaataattctcaaaaaaaaaaatctctgttattcttttttttttatagataattctatcaaatatgaacttacgacagggattcatatggacatgtgctgtgtgagggtttcttggatttattatgtttagttggtattcagacttacaatccatttgtataattgaatataaaggatgtcatgaccttatttgtgccatggacagtccttaaaatgctagggttccctagtttttttttgtagatgcctgaaaatactaaatcgggatgttaaataaaaatatttccccttttcctgggtgcttttcatggtacgtttttagatgaagaacctggtgttgctaccttttgctggaagcttacttttcaaatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="47363" stop="48559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47663" g_stop="48259" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E549780" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47663" e_stop="48259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTTGGAAACTAGGTTGCAGTTATGGTGCAGCTTTGTTTCAGTAATTAAACAGAATTATGATGAGATTTATTATTTGGGAGTACATTTTCCTACCAAAAGATTTAGAATCCTAGGGCTGAGATGGATAGGACTAAGAAAACCCGGGTTGTGAGAAGAACTGTTTGTCAAACTTGGATTTGCTGCTGTAATTCTATGTTTTTTTTTAGAGAATTCTATCAAATAATTCTC-AAAAAAAAAATCTCTGTTATTCTTTTTTTTTTATAGATAATTCTATCAAATATGAACTTACGACAGTGATTCATATGGACATGTGCTGTGTGAGGGTTTCTTGGATTTATTATGTTTAGTTGGTATTCAGACTTACAATCCATTTGTATAATTGAATATAAAGGATGTCATGACCTTAATTGTGCCATGGACAGTCCTTAAAATGCTAGGGTTCCCTAGTTTTTTTTTGTAGATGCCTGAAGATACTAAATCTGGATGTTAGATAAAAATATTTCCACTTTTCCTGGGTGCTTTTCATGGTACGTTTTTAGATGTAGTACCTGGTGTTGCTAGCTTTTGCTGGAAGCTTACTTTTCAAATGATT</genome_strand>
        <mrna_strand>CTTTTCTTGGAAACTAGGTTGCAGTTATGGTGCAGCTTTGTTTCAGTAATTAACCAGAATTATGATGAGATTTATTATTTGGGAGTACATTTTCCTACCAAAAGATTTAGAATCCTAGGGCTGAGATGGATAGGACTAAGAAAACCCGGGTTGTGAGAAGAACTGTTTGTCAAACTTGGATTTGCTGCTGTAATTCTATGTTTTTTTTTAGAGAATTCTATCAAATAATTCTCAAAAAAAAAAATCTCTGTTATTCTTTTTTTTTTATAGATAATTCTATCAAATATGAACTTACGACAGGGATTCATATGGACATGTGCTGTGTGAGGGTTTCTTGGATTTATTATGTTTAGTTGGTATTCAGACTTACAATCCATTTGTATAATTGAATATAAAGGATGTCATGACCTTATTTGTGCCATGGACAGTCCTTAAAATGCTAGGGTTCCCTAGTTTTTTTTTGTAGATGCCTGAAAATACTAAATCGGGATGTTAAATAAAAATATTTCCCCTTTTCCTGGGTGCTTTTCATGGTACGTTTTTAGATGAAGAACCTGGTGTTGCTACCTTTTGCTGGAAGCTTACTTTTCAAATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E368386" ref_strand="+" ref_description="SGN-E368386 [TUS-23-L11]">
      <seq>ttttcttggaaactaggttgcagttatggtgcagctttgtttcagtaattaaacagaattatgatgagatttattatttgggagtacattttcctaccaaaagatttagaatcctagggctgagatggataggactaagaaaacccgggttgtgagaagaactgtttgtcaaacttggatttgctgctgtaattctatgtttttttttagagaattctatcaaataattctcaaaaaaaaaaatctctgttattcttttttttttatagataattctatcaaatatgaacttacgacagtgattcatatggacatgtgctgtgtgagggtttcttggatttattatgtttagttggtattcagacttacaatccatttgtataattgaatataaaggatgtcatgaccttaattgtgccatggacagtccttaaaatgctagggttccctagtttttttttgtagatgcctgaagatactaaatctggatgttagataaaaatatttccacttttcctgggtgcttttcatggtacgtttttagatgtagtacctggtgttgctagcttttgctggaagcttacttttcaaatgattctggacttcttaaacatgacatgtacccttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="47364" stop="48591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47664" g_stop="48291" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E368386" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47664" e_stop="48291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTGGAAACTAGGTTGCAGTTATGGTGCAGCTTTGTTTCAGTAATTAAACAGAATTATGATGAGATTTATTATTTGGGAGTACATTTTCCTACCAAAAGATTTAGAATCCTAGGGCTGAGATGGATAGGACTAAGAAAACCCGGGTTGTGAGAAGAACTGTTTGTCAAACTTGGATTTGCTGCTGTAATTCTATGTTTTTTTTTAGAGAATTCTATCAAATAATTCTC-AAAAAAAAAATCTCTGTTATTCTTTTTTTTTTATAGATAATTCTATCAAATATGAACTTACGACAGTGATTCATATGGACATGTGCTGTGTGAGGGTTTCTTGGATTTATTATGTTTAGTTGGTATTCAGACTTACAATCCATTTGTATAATTGAATATAAAGGATGTCATGACCTTAATTGTGCCATGGACAGTCCTTAAAATGCTAGGGTTCCCTAGTTTTTTTTTGTAGATGCCTGAAGATACTAAATCTGGATGTTAGATAAAAATATTTCCACTTTTCCTGGGTGCTTTTCATGGTACGTTTTTAGATGTAGTACCTGGTGTTGCTAGCTTTTGCTGGAAGCTTACTTTTCAAATGATTCTGGACTTCTTAAACATGACATGTACCCTTCA</genome_strand>
        <mrna_strand>TTTTCTTGGAAACTAGGTTGCAGTTATGGTGCAGCTTTGTTTCAGTAATTAAACAGAATTATGATGAGATTTATTATTTGGGAGTACATTTTCCTACCAAAAGATTTAGAATCCTAGGGCTGAGATGGATAGGACTAAGAAAACCCGGGTTGTGAGAAGAACTGTTTGTCAAACTTGGATTTGCTGCTGTAATTCTATGTTTTTTTTTAGAGAATTCTATCAAATAATTCTCAAAAAAAAAAATCTCTGTTATTCTTTTTTTTTTATAGATAATTCTATCAAATATGAACTTACGACAGTGATTCATATGGACATGTGCTGTGTGAGGGTTTCTTGGATTTATTATGTTTAGTTGGTATTCAGACTTACAATCCATTTGTATAATTGAATATAAAGGATGTCATGACCTTAATTGTGCCATGGACAGTCCTTAAAATGCTAGGGTTCCCTAGTTTTTTTTTGTAGATGCCTGAAGATACTAAATCTGGATGTTAGATAAAAATATTTCCACTTTTCCTGGGTGCTTTTCATGGTACGTTTTTAGATGTAGTACCTGGTGTTGCTAGCTTTTGCTGGAAGCTTACTTTTCAAATGATTCTGGACTTCTTAAACATGACATGTACCCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E246279" ref_strand="+" ref_description="SGN-E246279 [cLEF-40-M10]">
      <seq>ttttcttggaaactaggttgcagttatggtgcagctttgtttcagtaattaaacagaattatgatgagatttattatttgggagtacattttcctaccaaaagatttagaatcctagggctgagatggataggactaagaaaacccgggttgtgagaagaactgtttgtcaaacttggatttgctgctgtaattctatgtttttttttagagaattctatcaaataattctcaaaaaaaaaaatctctgttattcttttttttttatagataattctatcaaatatgaacttacgacagtgattcatatggacatgtgctgtgtgagggtttcttggatttattatgtttagttggtattcagacttacaatccatttgtataattgaatataaaggatgtcatgaccttaattgtgccatggacagtccttaaaatgctagggttccctagtttttttttgtagatgcctgaagatactaaatctggatgttagataaaaatatttccacttttcctgggtgcttttcatggtacgtttttagatgtagtacctggtgttgctagcttttgctggaagcttacttttcaaatgattctggacttcttaaacatgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="47364" stop="48581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47664" g_stop="48281" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E246279" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47664" e_stop="48281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTGGAAACTAGGTTGCAGTTATGGTGCAGCTTTGTTTCAGTAATTAAACAGAATTATGATGAGATTTATTATTTGGGAGTACATTTTCCTACCAAAAGATTTAGAATCCTAGGGCTGAGATGGATAGGACTAAGAAAACCCGGGTTGTGAGAAGAACTGTTTGTCAAACTTGGATTTGCTGCTGTAATTCTATGTTTTTTTTTAGAGAATTCTATCAAATAATTCTC-AAAAAAAAAATCTCTGTTATTCTTTTTTTTTTATAGATAATTCTATCAAATATGAACTTACGACAGTGATTCATATGGACATGTGCTGTGTGAGGGTTTCTTGGATTTATTATGTTTAGTTGGTATTCAGACTTACAATCCATTTGTATAATTGAATATAAAGGATGTCATGACCTTAATTGTGCCATGGACAGTCCTTAAAATGCTAGGGTTCCCTAGTTTTTTTTTGTAGATGCCTGAAGATACTAAATCTGGATGTTAGATAAAAATATTTCCACTTTTCCTGGGTGCTTTTCATGGTACGTTTTTAGATGTAGTACCTGGTGTTGCTAGCTTTTGCTGGAAGCTTACTTTTCAAATGATTCTGGACTTCTTAAACATGACAT</genome_strand>
        <mrna_strand>TTTTCTTGGAAACTAGGTTGCAGTTATGGTGCAGCTTTGTTTCAGTAATTAAACAGAATTATGATGAGATTTATTATTTGGGAGTACATTTTCCTACCAAAAGATTTAGAATCCTAGGGCTGAGATGGATAGGACTAAGAAAACCCGGGTTGTGAGAAGAACTGTTTGTCAAACTTGGATTTGCTGCTGTAATTCTATGTTTTTTTTTAGAGAATTCTATCAAATAATTCTCAAAAAAAAAAATCTCTGTTATTCTTTTTTTTTTATAGATAATTCTATCAAATATGAACTTACGACAGTGATTCATATGGACATGTGCTGTGTGAGGGTTTCTTGGATTTATTATGTTTAGTTGGTATTCAGACTTACAATCCATTTGTATAATTGAATATAAAGGATGTCATGACCTTAATTGTGCCATGGACAGTCCTTAAAATGCTAGGGTTCCCTAGTTTTTTTTTGTAGATGCCTGAAGATACTAAATCTGGATGTTAGATAAAAATATTTCCACTTTTCCTGGGTGCTTTTCATGGTACGTTTTTAGATGTAGTACCTGGTGTTGCTAGCTTTTGCTGGAAGCTTACTTTTCAAATGATTCTGGACTTCTTAAACATGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E368385" ref_strand="-" ref_description="SGN-E368385 [TUS-23-L11]">
      <seq>tgtgccatggacagtccttaaaatgctagggttccctagtttttttttgtagatgcctgaagatactaaatctggatgttagataaaaatatttccacttttcctgggtgcttttcatggtacgtttttagatgtagtacctggtgttgctagcttttgctggaagcttacttttcaaatgattctggacttcttaaacatgacatgtacccttcatcttaataattgtagattatatatgcttgtgcacacttttattttctgtacgcatttaacatgttgtaaagttttgctatgcgtatagtgtctattagtcattgatcaatttgcatcccaacaggttcgattcctcaccaaaatctaccatccgaacatcgataagcttggaaggatatgccttgatattctcaaagacaaatggagtcctgctcttcagatccgtactgtacttttgagcattcaagcacttttgagtgctccaaatccagatgatccactctctgaaaacattgctaagcactggaagtcaaatgaggttgaagctgttgaaacggctaaggagtggacacgcctatatgctagtggtgcatgaagatatagcaacgaaatgttcaaaataacaaaaatcatggaatgtaatcaatattgactggcttatcaatatgaacctggatagcaccctccaaatttgtataattgaatgtgacaaccctttagttttttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="47776" stop="49451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48076" g_stop="48457" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48458" i_stop="48545" i_length="88">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48546" g_stop="48619" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="456" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48620" i_stop="48753" i_length="134">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48754" g_stop="48851" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="554" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48852" i_stop="48980" i_length="129">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48981" g_stop="49162" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="736" r_length="182" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E368385" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368385" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48076" e_stop="48457"/>
          <exon e_start="48546" e_stop="48619"/>
          <exon e_start="48754" e_stop="48851"/>
          <exon e_start="48981" e_stop="49162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGCCATGGACAGTCCTTAAAATGCTAGGGTTCCCTAGTTTTTTTTTGTAGATGCCTGAAGATACTAAATCTGGATGTTAGATAAAAATATTTCCACTTTTCCTGGGTGCTTTTCATGGTACGTTTTTAGATGTAGTACCTGGTGTTGCTAGCTTTTGCTGGAAGCTTACTTTTCAAATGATTCTGGACTTCTTAAACATGACATGTACCCTTCATCTTAATAATTGTAGATTATATATGCTTGTGCACACTTTTATTTTCTGTACGCATTTAACATGTTGTAAAGTTTTGCTATGCGTATAGTGTCTATTAGTCATTGATCAATTTGCATCCCAACAGGTTCGATTCCTCACCAAAATCTACCATCCGAACATCGATAAGGTCTGTTGTCCTCGTCAAGTTTTTCATATCCATACATATAGATACAAGCCATAAAATACCTTGCTTATTTATGCCTTTTGATGTGAAGCTTGGAAGGATATGCCTTGATATTCTCAAAGACAAATGGAGTCCTGCTCTTCAGATCCGTACTGTACTTTTGAGGTATTAATAATTTATCATGCTTTGAAATATGTTTCTCATCTCTGTGTACATCAAAAGATGCAAGACTGATGTTAATGAGAACCATACTAAGCTTTTAAGGTGTTAGAAGTTCAAAAAGTTTACTACTGTTTCAGCATTCAAGCACTTTTGAGTGCTCCAAATCCAGATGATCCACTCTCTGAAAACATTGCTAAGCACTGGAAGTCAAATGAGGTTGAAGCTGTTGAAACGGGTAAGTTGTGTCCTGGTCTTCCAATCTAGAGCTGTAAATGTCAAGTAGAAAATGTTAATCTTATGCAAATCTGTATACGCATTCTTGTTCAATCCTTGATTTGACTTTCGTTTTTCTTCAATGATCCAGCTAAGGAGTGGACACGCCTATATGCTAGTGGTGCATGAAGATATAGCAACGAAATGTTCAAAATAACAAAAATCATGGAATGTAATCAATATTGACTGGCTTATCAATATGAACCTGGATAGCACCCTCCAAATTTGTATAATTGAATGTGACAACCCTTTAGTTTTTTAATGTTCAGGAAT</genome_strand>
        <mrna_strand>TGTGCCATGGACAGTCCTTAAAATGCTAGGGTTCCCTAGTTTTTTTTTGTAGATGCCTGAAGATACTAAATCTGGATGTTAGATAAAAATATTTCCACTTTTCCTGGGTGCTTTTCATGGTACGTTTTTAGATGTAGTACCTGGTGTTGCTAGCTTTTGCTGGAAGCTTACTTTTCAAATGATTCTGGACTTCTTAAACATGACATGTACCCTTCATCTTAATAATTGTAGATTATATATGCTTGTGCACACTTTTATTTTCTGTACGCATTTAACATGTTGTAAAGTTTTGCTATGCGTATAGTGTCTATTAGTCATTGATCAATTTGCATCCCAACAGGTTCGATTCCTCACCAAAATCTACCATCCGAACATCGATAAG........................................................................................CTTGGAAGGATATGCCTTGATATTCTCAAAGACAAATGGAGTCCTGCTCTTCAGATCCGTACTGTACTTTTGAG......................................................................................................................................CATTCAAGCACTTTTGAGTGCTCCAAATCCAGATGATCCACTCTCTGAAAACATTGCTAAGCACTGGAAGTCAAATGAGGTTGAAGCTGTTGAAACGG.................................................................................................................................CTAAGGAGTGGACACGCCTATATGCTAGTGGTGCATGAAGATATAGCAACGAAATGTTCAAAATAACAAAAATCATGGAATGTAATCAATATTGACTGGCTTATCAATATGAACCTGGATAGCACCCTCCAAATTTGTATAATTGAATGTGACAACCCTTTAGTTTTTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E236979" ref_strand="-" ref_description="SGN-E236979 [cLEL-7-J23]">
      <seq>aaggttcgattcctcaccaaaatctccatccgaacatcgaatagcttggaaggatatgccttgatattctcaaagacaaatggagtcctgctcttcagatccgtactgtacttttgagcattcaagcacttttgagtgctccaaatccagatgatccactctctgaaaacattgctaagcactggaagtcaaatgaggttgaagctgttgaaacggctaaggagtggacacgcctatatgctagtggtgcatgaagatatagcaacgaaatgttcaaaataacaaaaatcatggaatgtaatcaatattgactggcttatcaatatgaacctggatagctccctccaaatttgtataattgaatgtgtcaaccctttagttttttaatgttcaggaatgaactttgttgcagcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="48213" stop="70250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48416" g_stop="48457" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="44" r_length="41" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48458" i_stop="48545" i_length="88">
            <donor d_prob="0.983" d_score="0.93"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48546" g_stop="48619" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="118" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48620" i_stop="48753" i_length="134">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48754" g_stop="48851" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="216" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48852" i_stop="48980" i_length="129">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48981" g_stop="49190" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="426" r_length="210" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E236979" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236979" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48416" e_stop="48457"/>
          <exon e_start="48546" e_stop="48619"/>
          <exon e_start="48754" e_stop="48851"/>
          <exon e_start="48981" e_stop="49190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGATTCCTCACCAAAATCTACCATCCGAACATCGATAAGGTCTGTTGTCCTCGTCAAGTTTTTCATATCCATACATATAGATACAAGCCATAAAATACCTTGCTTATTTATGCCTTTTGATGTGAAGCTTGGAAGGATATGCCTTGATATTCTCAAAGACAAATGGAGTCCTGCTCTTCAGATCCGTACTGTACTTTTGAGGTATTAATAATTTATCATGCTTTGAAATATGTTTCTCATCTCTGTGTACATCAAAAGATGCAAGACTGATGTTAATGAGAACCATACTAAGCTTTTAAGGTGTTAGAAGTTCAAAAAGTTTACTACTGTTTCAGCATTCAAGCACTTTTGAGTGCTCCAAATCCAGATGATCCACTCTCTGAAAACATTGCTAAGCACTGGAAGTCAAATGAGGTTGAAGCTGTTGAAACGGGTAAGTTGTGTCCTGGTCTTCCAATCTAGAGCTGTAAATGTCAAGTAGAAAATGTTAATCTTATGCAAATCTGTATACGCATTCTTGTTCAATCCTTGATTTGACTTTCGTTTTTCTTCAATGATCCAGCTAAGGAGTGGACACGCCTATATGCTAGTGGTGCATGAAGATATAGCAACGAAATGTTCAAAATAACAAAAATCATGGAATGTAATCAATATTGACTGGCTTATCAATATGAACCTGGATAGCACCCTCCAAATTTGTATAATTGAATGTGACAACCCTTTAGTTTTTTAATGTTCAGGAATGAACTTTGTTACAACAAAACTGGAAATG</genome_strand>
        <mrna_strand>GTTCGATTCCTCACCAAAATCT-CCATCCGAACATCGAATAG........................................................................................CTTGGAAGGATATGCCTTGATATTCTCAAAGACAAATGGAGTCCTGCTCTTCAGATCCGTACTGTACTTTTGAG......................................................................................................................................CATTCAAGCACTTTTGAGTGCTCCAAATCCAGATGATCCACTCTCTGAAAACATTGCTAAGCACTGGAAGTCAAATGAGGTTGAAGCTGTTGAAACGG.................................................................................................................................CTAAGGAGTGGACACGCCTATATGCTAGTGGTGCATGAAGATATAGCAACGAAATGTTCAAAATAACAAAAATCATGGAATGTAATCAATATTGACTGGCTTATCAATATGAACCTGGATAGCTCCCTCCAAATTTGTATAATTGAATGTGTCAACCCTTTAGTTTTTTAATGTTCAGGAATGAACTTTGTTGCAGCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E236824" ref_strand="-" ref_description="SGN-E236824 [cLEL-7-J23]">
      <seq>accatccgaacatcgataagcttggaaggatatgccttgatattctcaaagacaaatggagtcctgctcttcagatccgtactgtacttttgagcattcaagcacttttgagtgctccaaatccagatgatccactctctaaaacattgctaagcactggaagtcaaatgaggttgaagctgttgaaacggctaaggagtggacacgcctatatgctagtggtgcatgaagatatagcaacgaaatgttcaaaataacaaaaatcatggaatgtaatcaatattgactggcttatcaatatgaacctggatagcaccctccaaatttgtataattgaatgtgacaaccctttagttttttaatgttcaggaatgaactttgtttcaacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="48138" stop="70249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48438" g_stop="48457" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48458" i_stop="48545" i_length="88">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48546" g_stop="48619" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="94" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48620" i_stop="48753" i_length="134">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48754" g_stop="48851" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="191" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48852" i_stop="48980" i_length="129">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48981" g_stop="49190" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="401" r_length="210" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E236824" ref_strand="-">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236824" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48438" e_stop="48457"/>
          <exon e_start="48546" e_stop="48619"/>
          <exon e_start="48754" e_stop="48851"/>
          <exon e_start="48981" e_stop="49190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATCCGAACATCGATAAGGTCTGTTGTCCTCGTCAAGTTTTTCATATCCATACATATAGATACAAGCCATAAAATACCTTGCTTATTTATGCCTTTTGATGTGAAGCTTGGAAGGATATGCCTTGATATTCTCAAAGACAAATGGAGTCCTGCTCTTCAGATCCGTACTGTACTTTTGAGGTATTAATAATTTATCATGCTTTGAAATATGTTTCTCATCTCTGTGTACATCAAAAGATGCAAGACTGATGTTAATGAGAACCATACTAAGCTTTTAAGGTGTTAGAAGTTCAAAAAGTTTACTACTGTTTCAGCATTCAAGCACTTTTGAGTGCTCCAAATCCAGATGATCCACTCTCTGAAAACATTGCTAAGCACTGGAAGTCAAATGAGGTTGAAGCTGTTGAAACGGGTAAGTTGTGTCCTGGTCTTCCAATCTAGAGCTGTAAATGTCAAGTAGAAAATGTTAATCTTATGCAAATCTGTATACGCATTCTTGTTCAATCCTTGATTTGACTTTCGTTTTTCTTCAATGATCCAGCTAAGGAGTGGACACGCCTATATGCTAGTGGTGCATGAAGATATAGCAACGAAATGTTCAAAATAACAAAAATCATGGAATGTAATCAATATTGACTGGCTTATCAATATGAACCTGGATAGCACCCTCCAAATTTGTATAATTGAATGTGACAACCCTTTAGTTTTTTAATGTTCAGGAATGAACTTTGTTACAACAAAACTGGAAATG</genome_strand>
        <mrna_strand>ACCATCCGAACATCGATAAG........................................................................................CTTGGAAGGATATGCCTTGATATTCTCAAAGACAAATGGAGTCCTGCTCTTCAGATCCGTACTGTACTTTTGAG......................................................................................................................................CATTCAAGCACTTTTGAGTGCTCCAAATCCAGATGATCCACTCTCT-AAAACATTGCTAAGCACTGGAAGTCAAATGAGGTTGAAGCTGTTGAAACGG.................................................................................................................................CTAAGGAGTGGACACGCCTATATGCTAGTGGTGCATGAAGATATAGCAACGAAATGTTCAAAATAACAAAAATCATGGAATGTAATCAATATTGACTGGCTTATCAATATGAACCTGGATAGCACCCTCCAAATTTGTATAATTGAATGTGACAACCCTTTAGTTTTTTAATGTTCAGGAATGAACTTTGTTTCAACAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E614576" ref_strand="+" ref_description="SGN-E614576 [64364]">
      <seq>catccgaacatcgataagcttggaaggatatgtcttgatattcttaaagacaaatggagtcctgctcttcagatccgtacagtacttttgagcattcaagcacttttgagtgctccaaatccagatgatccactctctgaaaacattgctaagcactggaagtcaaatgaagttgaagctgttgaaacggctaaggagtggacacgcctatatgctagtggtgcatgaagatatagcaacgaaatattcaaaataacaaaaatcatggaatgtaatcaatattgactggcttatcaatatgacgcccgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="48140" stop="49392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48440" g_stop="48457" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48458" i_stop="48545" i_length="88">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.859" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48546" g_stop="48619" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="92" r_length="74" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48620" i_stop="48753" i_length="134">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48754" g_stop="48851" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="190" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48852" i_stop="48980" i_length="129">
            <donor d_prob="0.942" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48981" g_stop="49099" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="310" r_length="120" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E614576" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E614576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48440" e_stop="48457"/>
          <exon e_start="48546" e_stop="48619"/>
          <exon e_start="48754" e_stop="48851"/>
          <exon e_start="48981" e_stop="49099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCGAACATCGATAAGGTCTGTTGTCCTCGTCAAGTTTTTCATATCCATACATATAGATACAAGCCATAAAATACCTTGCTTATTTATGCCTTTTGATGTGAAGCTTGGAAGGATATGCCTTGATATTCTCAAAGACAAATGGAGTCCTGCTCTTCAGATCCGTACTGTACTTTTGAGGTATTAATAATTTATCATGCTTTGAAATATGTTTCTCATCTCTGTGTACATCAAAAGATGCAAGACTGATGTTAATGAGAACCATACTAAGCTTTTAAGGTGTTAGAAGTTCAAAAAGTTTACTACTGTTTCAGCATTCAAGCACTTTTGAGTGCTCCAAATCCAGATGATCCACTCTCTGAAAACATTGCTAAGCACTGGAAGTCAAATGAGGTTGAAGCTGTTGAAACGGGTAAGTTGTGTCCTGGTCTTCCAATCTAGAGCTGTAAATGTCAAGTAGAAAATGTTAATCTTATGCAAATCTGTATACGCATTCTTGTTCAATCCTTGATTTGACTTTCGTTTTTCTTCAATGATCCAGCTAAGGAGTGGACACGCCTATATGCTAGTGGTGCATGAAGATATAGCAACGAAATGTTCAAAATAACAAAAATCATGGAATGTAATCAATATTGACTGGCTTATCAATATGA-ACCTGGA</genome_strand>
        <mrna_strand>CATCCGAACATCGATAAG........................................................................................CTTGGAAGGATATGTCTTGATATTCTTAAAGACAAATGGAGTCCTGCTCTTCAGATCCGTACAGTACTTTTGAG......................................................................................................................................CATTCAAGCACTTTTGAGTGCTCCAAATCCAGATGATCCACTCTCTGAAAACATTGCTAAGCACTGGAAGTCAAATGAAGTTGAAGCTGTTGAAACGG.................................................................................................................................CTAAGGAGTGGACACGCCTATATGCTAGTGGTGCATGAAGATATAGCAACGAAATATTCAAAATAACAAAAATCATGGAATGTAATCAATATTGACTGGCTTATCAATATGACGCCCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E618675" ref_strand="+" ref_description="SGN-E618675 [69356]">
      <seq>tgaatccactctctgaaaacattgctaagcactggaagtcaaatgaagttgaagctgttgaaacggctaaggagtggacacgcctatatgctagtggtgcatgaagatatagcaacgaaatattcaaaataacaaaaatcatggaatgtaatcaatattgactggcttatcaatatgacgcccggattgcacccttgaaattgtataattgaacatgacaccctttggttttttaatgttcaggaatgaactttgttgcaacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="48487" stop="70253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48787" g_stop="48851" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48852" i_stop="48980" i_length="129">
            <donor d_prob="0.942" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48981" g_stop="49190" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="275" r_length="209" r_score="0.905"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49191" i_stop="52130" i_length="2940">
            <donor d_prob="0.251" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52131" g_stop="52152" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="297" r_length="22" r_score="0.773"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E618675" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E618675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48787" e_stop="48851"/>
          <exon e_start="48981" e_stop="49190"/>
          <exon e_start="52131" e_stop="52152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TG-ATCCACTCTCTGAAAACATTGCTAAGCACTGGAAGTCAAATGAGGTTGAAGCTGTTGAAACGGGTAAGTTGTGTCCTGGTCTTCCAATCTAGAGCTGTAAATGTCAAGTAGAAAATGTTAATCTTATGCAAATCTGTATACGCATTCTTGTTCAATCCTTGATTTGACTTTCGTTTTTCTTCAATGATCCAGCTAAGGAGTGGACACGCCTATATGCTAGTGGTGCATGAAGATATAGCAACGAAATGTTCAAAATAACAAAAATCATGGAATGTAATCAATATTGACTGGCTTATCAATATGA-ACCTGGATAGCACCCTCCAAATTTGTATAATTGAATGTGACAACCCTTTAGTTTTTTAATGTTCAGGAATGAACTTTGTTACAACAAAACTGGAAATGGTAAGGATTTTGTCACTGCAAAGAGTAGTAAGTGATTCAGATCTGTGGGTTTGGAATTGAAAAGTACTGTTGCTGCACAGCTTCTATCAACCTCCATAGATTTTGTTTCAGAAAATTGAATTTTCCAAGGGAAATCCTTTTGTTTGACCCTTTTTGTTCTCTCTTTTCTTTCTTTTCCTCCCTATCCTGCATCGTTTGTTCCGGTTCTGTATGCTGCTTTTTTACTCTTTTCAGATAAATTATCCTTCATTCAACCTTTTTGTCCTACCTTTCCCTATCTAAAGACCCCAAAGACGATAATCAAACTGTAAATATGCACTCATGGGCTTTTTTTGTCTGGTTGTATTGTCAAAGAACAAGTATGTTTACAAGGTCTACCATGACTAAAGTGGATGCATTATCTATTGGTAGTTCCCCAAAATGCATCTTTGCCATATTATTCATATTAAGGTCCTTTTCAAGTGATTAGGTCCATTGCAATTGTTATATTTCTAAAAAGTACTTTGAATTAATTTGCTAAATTCCGAGACCAATAAAATGGAGTATATTTTGATTAATAGGATAGATTATATAGCTTTAACGTGTTTTGACGGATTAGACTATTGTCTAATTTCATTTATAGTCAAACTGAAGATTATTAATTGAGCATTTAACCATCTGATAAAAGCATTTTTATTTAATCTTTGAAACTTTCTAGTTGCGTGTGTTTTGAAATGTTTCCAATTACTTGAGCTGACAAAATCTCAAACATGTCGCAATTAAAAATCACATATTACATGTTTTAATGGCGATTTAAGTTTACTAATTTGTGGGAATAATACGTAGATATTAGAAACAACAACCGTTGCTTCTAATACTTGCCTTCGTGACAGCAACAACAAAAGTTGCTAATAATGCTAAGCAACAACAAAAGGCAATAAATATGTGTTTTCAAGACGATAAAAGTTGCTATTATCACAAATTTTTAGTAATGATTTATGTCTTTAAGCGGGACTGAAGTTGCCACTGATAAATACTTTAGGGAGACAAATATAACTATTTCTGGCGACTAAACTTGCCACAAAATTTTCATGGCGACAAGTAAATCCTTTAGCGGCGACAGCAGCTTCCTTTTATGGCAACAATGATGACCGTTAGCGGCGACAAGGGTTGCCAATAAAAACCTATGGTGGCAACACTTCTTGTGGCGACATTTATAATTTCAGCGGCAATAGCCACTAATAAAATACTTCTCGAAGCGACATTTACAGCCTTTAGCAGCGTTTGGAGTTGGCAATAACTACTTTTGGTGGCGACAGATATAACTTATAGCGGCAACTACAACTGCCACTAATACAAACTTTTAATGGCAACGGTTAAAACCTTTAGCGGCATTTGTTGTTGCCACAATAACAATTTTTAGTGGCGATAGACATAACTTATAGCGGCAGCTATAGTTGCCCTAGTAACAACTTTTAGTAGCGGAAGTTGTAACCTTTAGCAGCGAATGCAGTTGTCATTAAAAATAACTTTCCATTGTAGTTGCCACCAATAACAAACTTTAAGTGGCGACAGTTATAACCTTTAGCGGCGATTATAGTTGCGACTAAAAAACTACTTTTCGTGGCGGCAGATATAACTTATAGCGGCGACCAGGTTGCCACTAATTACTATTTTTAGTGGCGACTGATATAACGTATAGCGTCGACCACAGTTGCCAATAATACTAACTTTTAGTGGCGACATTGGCGGCGATTGTAGTTGCTACTAATAACAGCTTTTAGTGGCGACAGTATAACTTATAGCGTCGACCATAGTTGACACTAATACACAGCAGCAATGGATGAAATTGTCACTAATAATTCCTTTTAGTTGCAATAAATATAACTTATAGCGGCAACTAAAATTGCAACTAATACATCCTTTAGTTCGCGACAGCTAAAAAATCTTTGGAGCGACTTGATTATTTTTGGTGGCGACAAGAAATACTTTTAGTGGCGACATATAATAAATACAAGAAATACTTTTAGTGACGACATATAATAAATAGTGGCGACTGTATTTAGGACTAACAATTACTTTTATTGGCAACAAATATAACTTATAGCGGTAACTAAAGTTGCCACTAATACGAACTTTATTGGCGAGTTATAATGCTGCCATAAAAGACGTCAACATACATTCTTTTAGTGGTGACTTATATATCTTTTAGCAGACTAAAGTTGCTAGTAATGCTGACTTTGTAGTGGTAGGAGTATATAAATAGTTGCCACTTCAGTTTTTGGTTGCGACTAGTTAATACCAACTTTTAGTGGCTTTATAATTGATCTAATGGTTTTCGTTGGTGGCGGGGTCTATTTGATGAGCATTTGTAAAGTTATATTATTGTTTTATCGCATAAAATTTATTAGAGAAATCATAGATTTATTTTATAAGTATTTTCTATTGATTAAATCGAAAACTGAAACCGTTAAGAATGAAAATTGTAAGCCGAAAATCAATAAAAATATTTTATTGATTTAGTTATTGACTTAGCGTATTGGTTGTCTTGTAGCTTATATCGTCTTTTTTCTTGTCTTAATGCTTCTTGTTCCACTTTTCCCCAATACATCCTTCAACAAATGTGGTACTTTTTTACCCGTAAAAAAAAATAAAAACTTATCCAAAATTGATTTATCCATCAACTTATTTTAGCTAATTTAATACTTATAGTTGAATGTAAAATTGTGGTGTAGATGTTAATTTACGCAGAAAAGTGTATTAATAACTACCTTTTTGTCTTAATTTATAGTAATTTATTTTCTTTTAATTTGTCTTTAAAAAATATTATTTTCTATAATTATGATCAATTTAATGTTAGAATTTTTTTTTTTAATTTTAATAAAATATTTCATAATCACACGAATATTTAAAATTCGATAAAGACACCTAGGGAGGCAGACATGCCATTCTCTTAATTACAAAAAGAAAACAAATAAAATAT</genome_strand>
        <mrna_strand>TGAATCCACTCTCTGAAAACATTGCTAAGCACTGGAAGTCAAATGAAGTTGAAGCTGTTGAAACGG.................................................................................................................................CTAAGGAGTGGACACGCCTATATGCTAGTGGTGCATGAAGATATAGCAACGAAATATTCAAAATAACAAAAATCATGGAATGTAATCAATATTGACTGGCTTATCAATATGACGCCCGGATTGCACCCTTGAAA-TTGTATAATTGAACATGAC-ACCCTTTGGTTTTTTAATGTTCAGGAATGAACTTTGTTGCAACAAAAAAAAAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E222801" ref_strand="-" ref_description="SGN-E222801 [cLEL-16-K5]">
      <seq>gctaagcactggaagtcaaatgaggttgaagctgttgaaacggcctaaggagtggacacgcnctatatgctagtggtgcatgaagatatagcaacgaaatgttcaaaataacaaaaatcatggaatgtaatcaatattgactggcttatcaatatgaacctggatagcaccctccaaatttgtataattgaatgtgacaaccctttagttttttaatggttcaggaatgaactttgttacaacaaaactggaaatggtaaggattttgtccctgcaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="48509" stop="70253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48809" g_stop="48851" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48852" i_stop="48980" i_length="129">
            <donor d_prob="0.942" d_score="0.95"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48981" g_stop="49217" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="283" r_length="239" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49218" i_stop="50015" i_length="798">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.889" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50016" g_stop="50032" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="300" r_length="17" r_score="0.588"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E222801" ref_strand="-">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222801" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48809" e_stop="48851"/>
          <exon e_start="48981" e_stop="49217"/>
          <exon e_start="50016" e_stop="50032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAGCACTGGAAGTCAAATGAGGTTGAAGCTGTTGAAACGG-GTAAGTTGTGTCCTGGTCTTCCAATCTAGAGCTGTAAATGTCAAGTAGAAAATGTTAATCTTATGCAAATCTGTATACGCATTCTTGTTCAATCCTTGATTTGACTTTCGTTTTTCTTCAATGATCCAGCTAAGGAGTGGACACGC-CTATATGCTAGTGGTGCATGAAGATATAGCAACGAAATGTTCAAAATAACAAAAATCATGGAATGTAATCAATATTGACTGGCTTATCAATATGAACCTGGATAGCACCCTCCAAATTTGTATAATTGAATGTGACAACCCTTTAGTTTTTTAAT-GTTCAGGAATGAACTTTGTTACAACAAAACTGGAAATGGTAAGGATTTTGTCACTGCAAAGAGTAGTAAGTGATTCAGATCTGTGGGTTTGGAATTGAAAAGTACTGTTGCTGCACAGCTTCTATCAACCTCCATAGATTTTGTTTCAGAAAATTGAATTTTCCAAGGGAAATCCTTTTGTTTGACCCTTTTTGTTCTCTCTTTTCTTTCTTTTCCTCCCTATCCTGCATCGTTTGTTCCGGTTCTGTATGCTGCTTTTTTACTCTTTTCAGATAAATTATCCTTCATTCAACCTTTTTGTCCTACCTTTCCCTATCTAAAGACCCCAAAGACGATAATCAAACTGTAAATATGCACTCATGGGCTTTTTTTGTCTGGTTGTATTGTCAAAGAACAAGTATGTTTACAAGGTCTACCATGACTAAAGTGGATGCATTATCTATTGGTAGTTCCCCAAAATGCATCTTTGCCATATTATTCATATTAAGGTCCTTTTCAAGTGATTAGGTCCATTGCAATTGTTATATTTCTAAAAAGTACTTTGAATTAATTTGCTAAATTCCGAGACCAATAAAATGGAGTATATTTTGATTAATAGGATAGATTATATAGCTTTAACGTGTTTTGACGGATTAGACTATTGTCTAATTTCATTTATAGTCAAACTGAAGATTATTAATTGAGCATTTAACCATCTGATAAAAGCATTTTTATTTAATCTTTGAAACTTTCTAGTTGCGTGTGTTTTGAAATGTTTCCAATTACTTGAGCTGACAAAATCTCAAACATGTCGCAATTAAAAATCACATATTACATGTTTTAATGGCGATTTAAGTTTACTAATTTGTGGGAATAATACGTAGATATTAGAAACAACAAC</genome_strand>
        <mrna_strand>GCTAAGCACTGGAAGTCAAATGAGGTTGAAGCTGTTGAAACGGC.................................................................................................................................CTAAGGAGTGGACACGCNCTATATGCTAGTGGTGCATGAAGATATAGCAACGAAATGTTCAAAATAACAAAAATCATGGAATGTAATCAATATTGACTGGCTTATCAATATGAACCTGGATAGCACCCTCCAAATTTGTATAATTGAATGTGACAACCCTTTAGTTTTTTAATGGTTCAGGAATGAACTTTGTTACAACAAAACTGGAAATGGTAAGGATTTTGTCCCTGCAAAAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E222211" ref_strand="-" ref_description="SGN-E222211 [cLEL-16-K5]">
      <seq>gctaagcactggaagtcaaatgaggttgaagctgttgaaacggctaaggagtggacacgcctatatgctagtggtgcatgaagatatagcaacgaaatgttcaaaataacaaaaatcatggaatgtaatcaatattgactggcttatcaatatgaacctggatagcaccctccaaatttgtataattgaatgtgacaaccctttagttttttaatgttcaggaatgaactttgttacaacaaaactggaaatggtaaggattttgtcactgcaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="48509" stop="70253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48809" g_stop="48851" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48852" i_stop="48980" i_length="129">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48981" g_stop="49217" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="280" r_length="237" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49218" i_stop="50015" i_length="798">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.889" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50016" g_stop="50032" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="297" r_length="17" r_score="0.588"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E222211" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222211" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48809" e_stop="48851"/>
          <exon e_start="48981" e_stop="49217"/>
          <exon e_start="50016" e_stop="50032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAGCACTGGAAGTCAAATGAGGTTGAAGCTGTTGAAACGGGTAAGTTGTGTCCTGGTCTTCCAATCTAGAGCTGTAAATGTCAAGTAGAAAATGTTAATCTTATGCAAATCTGTATACGCATTCTTGTTCAATCCTTGATTTGACTTTCGTTTTTCTTCAATGATCCAGCTAAGGAGTGGACACGCCTATATGCTAGTGGTGCATGAAGATATAGCAACGAAATGTTCAAAATAACAAAAATCATGGAATGTAATCAATATTGACTGGCTTATCAATATGAACCTGGATAGCACCCTCCAAATTTGTATAATTGAATGTGACAACCCTTTAGTTTTTTAATGTTCAGGAATGAACTTTGTTACAACAAAACTGGAAATGGTAAGGATTTTGTCACTGCAAAGAGTAGTAAGTGATTCAGATCTGTGGGTTTGGAATTGAAAAGTACTGTTGCTGCACAGCTTCTATCAACCTCCATAGATTTTGTTTCAGAAAATTGAATTTTCCAAGGGAAATCCTTTTGTTTGACCCTTTTTGTTCTCTCTTTTCTTTCTTTTCCTCCCTATCCTGCATCGTTTGTTCCGGTTCTGTATGCTGCTTTTTTACTCTTTTCAGATAAATTATCCTTCATTCAACCTTTTTGTCCTACCTTTCCCTATCTAAAGACCCCAAAGACGATAATCAAACTGTAAATATGCACTCATGGGCTTTTTTTGTCTGGTTGTATTGTCAAAGAACAAGTATGTTTACAAGGTCTACCATGACTAAAGTGGATGCATTATCTATTGGTAGTTCCCCAAAATGCATCTTTGCCATATTATTCATATTAAGGTCCTTTTCAAGTGATTAGGTCCATTGCAATTGTTATATTTCTAAAAAGTACTTTGAATTAATTTGCTAAATTCCGAGACCAATAAAATGGAGTATATTTTGATTAATAGGATAGATTATATAGCTTTAACGTGTTTTGACGGATTAGACTATTGTCTAATTTCATTTATAGTCAAACTGAAGATTATTAATTGAGCATTTAACCATCTGATAAAAGCATTTTTATTTAATCTTTGAAACTTTCTAGTTGCGTGTGTTTTGAAATGTTTCCAATTACTTGAGCTGACAAAATCTCAAACATGTCGCAATTAAAAATCACATATTACATGTTTTAATGGCGATTTAAGTTTACTAATTTGTGGGAATAATACGTAGATATTAGAAACAACAAC</genome_strand>
        <mrna_strand>GCTAAGCACTGGAAGTCAAATGAGGTTGAAGCTGTTGAAACGG.................................................................................................................................CTAAGGAGTGGACACGCCTATATGCTAGTGGTGCATGAAGATATAGCAACGAAATGTTCAAAATAACAAAAATCATGGAATGTAATCAATATTGACTGGCTTATCAATATGAACCTGGATAGCACCCTCCAAATTTGTATAATTGAATGTGACAACCCTTTAGTTTTTTAATGTTCAGGAATGAACTTTGTTACAACAAAACTGGAAATGGTAAGGATTTTGTCACTGCAAAAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E218866" ref_strand="+" ref_description="SGN-E218866 [cLEL-18-E14]">
      <seq>tttttttttttttttttgtaacaaagttcattcctgaacattaaaaaactaaagggttgtcacattcaattatacaaatttggagggtgctatccaggttcatattgataagccagtcaatattgattacattccatgatttttgttattttgaacatttcgttgctatatcttcatgcaccactagcatataggcgtgtccactctcgtgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="70247" stop="48680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49191" g_stop="48979" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E218866" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>213</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49191" e_stop="48979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTCCAGTTTTGTTGTAACAAAGTTCATTCCTGAACATTAAAAAACTAAAGGGTTGTCACATTCAATTATACAAATTTGGAGGGTGCTATCCAGGTTCATATTGATAAGCCAGTCAATATTGATTACATTCCATGATTTTTGTTATTTTGAACATTTCGTTGCTATATCTTCATGCACCACTAGCATATAGGCGTGTCCACTCCTTAGCT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTGTAACAAAGTTCATTCCTGAACATTAAAAAACTAAAGGGTTGTCACATTCAATTATACAAATTTGGAGGGTGCTATCCAGGTTCATATTGATAAGCCAGTCAATATTGATTACATTCCATGATTTTTGTTATTTTGAACATTTCGTTGCTATATCTTCATGCACCACTAGCATATAGGCGTGTCCACTCTCGTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E293976" ref_strand="+" ref_description="SGN-E293976 [cLET-13-J9]">
      <seq>acgcctatatgctagtggtgcatgaagatatagcaacgaaatgttcaaaataacaaaaatcatggaatgtaatcaatattgactggcttatcaatatgaacctggatagcaccctccaaatttgtataattgaatgtgacaaccctttagttttttaatgttcaggaatgaactttgttacaacaaaactggaaatggtaaggattttgtcactgcaaagagtagtaagtgattcagatctgtgggtttggaattgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattaaggggggggcgggaaaccaaaaaaaccctcgggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="48694" stop="70257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48994" g_stop="49253" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49254" i_stop="52745" i_length="3492">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52746" g_stop="52829" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="344" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E293976" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48994" e_stop="49253"/>
          <exon e_start="52746" e_stop="52829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCCTATATGCTAGTGGTGCATGAAGATATAGCAACGAAATGTTCAAAATAACAAAAATCATGGAATGTAATCAATATTGACTGGCTTATCAATATGAACCTGGATAGCACCCTCCAAATTTGTATAATTGAATGTGACAACCCTTTAGTTTTTTAATGTTCAGGAATGAACTTTGTTACAACAAAACTGGAAATGGTAAGGATTTTGTCACTGCAAAGAGTAGTAAGTGATTCAGATCTGTGGGTTTGGAATTGAAAAGTACTGTTGCTGCACAGCTTCTATCAACCTCCATAGATTTTGTTTCAGAAAATTGAATTTTCCAAGGGAAATCCTTTTGTTTGACCCTTTTTGTTCTCTCTTTTCTTTCTTTTCCTCCCTATCCTGCATCGTTTGTTCCGGTTCTGTATGCTGCTTTTTTACTCTTTTCAGATAAATTATCCTTCATTCAACCTTTTTGTCCTACCTTTCCCTATCTAAAGACCCCAAAGACGATAATCAAACTGTAAATATGCACTCATGGGCTTTTTTTGTCTGGTTGTATTGTCAAAGAACAAGTATGTTTACAAGGTCTACCATGACTAAAGTGGATGCATTATCTATTGGTAGTTCCCCAAAATGCATCTTTGCCATATTATTCATATTAAGGTCCTTTTCAAGTGATTAGGTCCATTGCAATTGTTATATTTCTAAAAAGTACTTTGAATTAATTTGCTAAATTCCGAGACCAATAAAATGGAGTATATTTTGATTAATAGGATAGATTATATAGCTTTAACGTGTTTTGACGGATTAGACTATTGTCTAATTTCATTTATAGTCAAACTGAAGATTATTAATTGAGCATTTAACCATCTGATAAAAGCATTTTTATTTAATCTTTGAAACTTTCTAGTTGCGTGTGTTTTGAAATGTTTCCAATTACTTGAGCTGACAAAATCTCAAACATGTCGCAATTAAAAATCACATATTACATGTTTTAATGGCGATTTAAGTTTACTAATTTGTGGGAATAATACGTAGATATTAGAAACAACAACCGTTGCTTCTAATACTTGCCTTCGTGACAGCAACAACAAAAGTTGCTAATAATGCTAAGCAACAACAAAAGGCAATAAATATGTGTTTTCAAGACGATAAAAGTTGCTATTATCACAAATTTTTAGTAATGATTTATGTCTTTAAGCGGGACTGAAGTTGCCACTGATAAATACTTTAGGGAGACAAATATAACTATTTCTGGCGACTAAACTTGCCACAAAATTTTCATGGCGACAAGTAAATCCTTTAGCGGCGACAGCAGCTTCCTTTTATGGCAACAATGATGACCGTTAGCGGCGACAAGGGTTGCCAATAAAAACCTATGGTGGCAACACTTCTTGTGGCGACATTTATAATTTCAGCGGCAATAGCCACTAATAAAATACTTCTCGAAGCGACATTTACAGCCTTTAGCAGCGTTTGGAGTTGGCAATAACTACTTTTGGTGGCGACAGATATAACTTATAGCGGCAACTACAACTGCCACTAATACAAACTTTTAATGGCAACGGTTAAAACCTTTAGCGGCATTTGTTGTTGCCACAATAACAATTTTTAGTGGCGATAGACATAACTTATAGCGGCAGCTATAGTTGCCCTAGTAACAACTTTTAGTAGCGGAAGTTGTAACCTTTAGCAGCGAATGCAGTTGTCATTAAAAATAACTTTCCATTGTAGTTGCCACCAATAACAAACTTTAAGTGGCGACAGTTATAACCTTTAGCGGCGATTATAGTTGCGACTAAAAAACTACTTTTCGTGGCGGCAGATATAACTTATAGCGGCGACCAGGTTGCCACTAATTACTATTTTTAGTGGCGACTGATATAACGTATAGCGTCGACCACAGTTGCCAATAATACTAACTTTTAGTGGCGACATTGGCGGCGATTGTAGTTGCTACTAATAACAGCTTTTAGTGGCGACAGTATAACTTATAGCGTCGACCATAGTTGACACTAATACACAGCAGCAATGGATGAAATTGTCACTAATAATTCCTTTTAGTTGCAATAAATATAACTTATAGCGGCAACTAAAATTGCAACTAATACATCCTTTAGTTCGCGACAGCTAAAAAATCTTTGGAGCGACTTGATTATTTTTGGTGGCGACAAGAAATACTTTTAGTGGCGACATATAATAAATACAAGAAATACTTTTAGTGACGACATATAATAAATAGTGGCGACTGTATTTAGGACTAACAATTACTTTTATTGGCAACAAATATAACTTATAGCGGTAACTAAAGTTGCCACTAATACGAACTTTATTGGCGAGTTATAATGCTGCCATAAAAGACGTCAACATACATTCTTTTAGTGGTGACTTATATATCTTTTAGCAGACTAAAGTTGCTAGTAATGCTGACTTTGTAGTGGTAGGAGTATATAAATAGTTGCCACTTCAGTTTTTGGTTGCGACTAGTTAATACCAACTTTTAGTGGCTTTATAATTGATCTAATGGTTTTCGTTGGTGGCGGGGTCTATTTGATGAGCATTTGTAAAGTTATATTATTGTTTTATCGCATAAAATTTATTAGAGAAATCATAGATTTATTTTATAAGTATTTTCTATTGATTAAATCGAAAACTGAAACCGTTAAGAATGAAAATTGTAAGCCGAAAATCAATAAAAATATTTTATTGATTTAGTTATTGACTTAGCGTATTGGTTGTCTTGTAGCTTATATCGTCTTTTTTCTTGTCTTAATGCTTCTTGTTCCACTTTTCCCCAATACATCCTTCAACAAATGTGGTACTTTTTTACCCGTAAAAAAAAATAAAAACTTATCCAAAATTGATTTATCCATCAACTTATTTTAGCTAATTTAATACTTATAGTTGAATGTAAAATTGTGGTGTAGATGTTAATTTACGCAGAAAAGTGTATTAATAACTACCTTTTTGTCTTAATTTATAGTAATTTATTTTCTTTTAATTTGTCTTTAAAAAATATTATTTTCTATAATTATGATCAATTTAATGTTAGAATTTTTTTTTTTAATTTTAATAAAATATTTCATAATCACACGAATATTTAAAATTCGATAAAGACACCTAGGGAGGCAGACATGCCATTCTCTTAATTACAAAAAGAAAACAAATAAAATATCATAGGATACAAGGTGGAGGTATTAGGTATACGACTAGTGATATTTATAAAATGAAAAAAAGAAGAAGAAATATTAAAGCAAAAACAAATAAATAAATAGACTATAGTACATAAAATGATATTTTATAAGTTTAAAGAATATCACGTTTCCCCAGCCGAAAGGTATTTGTCATTTTCAGCCGCCCAAATATTTTTTAATAATATTTAAATACTTATTCAACCACCTTTTTGCATTTTAGTTCTTAAGTATATAGGCACAAAATACTTTGTATTGGATCCTCTTCAGCTAATTATTGAGATCAAATTACCCCTACTCATATGTTTATATTGATTTCGAATTCGATTAATTTAGATTTTTACGAAATAATTTTATTTTAAAAGATTTTTAAAAAAAAATTATTTTTAAGATAAGATAATTTCTTTTTTTAAGACACCTTTTTTCAATCGTTATAATCAAAACTTGTATGTAATATTTGTACAAAACATCAAAAGGTTCGAAACTCTTTTCTTATCTAAAATTTAAGAATTACTCTATTCTCGAACCCTTTATTAAGCTCTATTTTATTCGCATTTCCTCGTGTTTTTAAATGGAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>ACGCCTATATGCTAGTGGTGCATGAAGATATAGCAACGAAATGTTCAAAATAACAAAAATCATGGAATGTAATCAATATTGACTGGCTTATCAATATGAACCTGGATAGCACCCTCCAAATTTGTATAATTGAATGTGACAACCCTTTAGTTTTTTAATGTTCAGGAATGAACTTTGTTACAACAAAACTGGAAATGGTAAGGATTTTGTCACTGCAAAGAGTAGTAAGTGATTCAGATCTGTGGGTTTGGAATTGAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAGGGGGGGGCGGGAAACCAAAAAAACCCTCGGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E472697" ref_strand="+" ref_description="SGN-E472697 [cSTB-29-J11]">
      <seq>agaagttgggaattggaaccaagcagtctttaatggcgggaaaaggaatccctaaaatctccattatttactcttaaatgctaagcataaacatctccagcttcttcaaagttccttacagacccaacaattttagccctagatttgttctactatttgtttcttcaatggcgtcttcaacaaaagtcacagttgagtacgcgaaatccggtcgatcgtcatgtaagaaatgcgacgagaagattccggcgaaatccgtaaggctgggattggtgtcaaaacatcctcaaggctttgaccagacaaaatggcatcatctcgattgtttccctttcagttctgatttcgtttcctctgtggaagacatcactggattctcattgcttcagaacaaagataaagaaacattggagaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="54936" stop="56678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55205" g_stop="55603" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55604" i_stop="56348" i_length="745">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56349" g_stop="56378" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="419" r_length="30" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E472697" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.024" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55205" e_stop="55603"/>
          <exon e_start="56349" e_stop="56378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTTGGGAATCAGAACCAACAAATACTATCTTTAATGGGCGGGAAAAGGAATCCCTAAAATCTCCCATTATTTACTCTTAAATGCTAAGCATAAACATCTCCAGCTTCTTCTTCAAAGTTCCTTCCAGAACCAACAATTTTAACCCTAGATTAATTCTACTATTTTTTTCTCCAATGGCGTCTTCTACAAAAGTCACAGTTGAGTATGCGAAATCCGGTCGATCGTCATGTAAGAAATGCGATGAGAAGATTCCGGCGAAATCAGTAAGGCTGGGATTAGTGTCAAAACACCCTCAAGGCTTTGACCAGACGAAATGGCATCATCTCGATTGTTTCCCTTTCAATTCTGATTTCGTTTCCTCTGTGGAAGACATCGCTGGTTTCTCATTGCTCCAGGTATACATTTCTAAAACTCTGACTAAATTTAAGCTTAATTTTGCAATTTGCATGTGGAGTATTTACTGAATTATTTGGAGTGACGAGTCAAAAATACATGTCTCCATTTTTTTTTTTGAGTTTGATATGTGAACTGAACTATCACGTGTGTGAGTTTTTTAGCTAAACTATAACCAATTATTTATCAAAATACACCTTAACTATCAATTGTTCCTATTTCCTACATTAACTTGGTGATATTTTAGGTAGTAAAAGAGAACAACTTATGTATGAATGTCTTTTGATAAATAGTTGATTATAGTTGAGTAGTAAACTCACAAATAATTTAGATATGAAACTTGAAAAACCTCAATACTTTAGGGGTATTTTTTTATCATTATTTTCCAATATGCATTTGTAGCCGTTTGTTTGATTTTCCATTCATGTGAAAAAAAGTATCTTCTTTTAGTTGTATCTATAGGTGAGCATGGCATAAATTATCTTTCGCTAGAGCTACGTGTATGAACTTTTGTTAAATATATACCTGCAGTCCTGCACTAAGTCAATTTTGTTATCAAATAGTTGTAGGTGCATGCGATTGTATTTGACACCACCTGACTTGGAGCAGCTTTATTTCATTATAGAGTCTTTTTGCCATCTTGATAAACTATCTTTATTCTCAGTGTTTTATTTGATAACTAAAAGGTTTTCTTTTAGTTGATAATATTCTTCGTTGCAGCTAAGCTTGTCTTTCTGATTTATGCAGAACAAAGATAAAGAAACTTTGGAGAAACTG</genome_strand>
        <mrna_strand>AGAAGTTGGGAATTGGAA-C--CAA-G-CAGTCTTTAATG-GCGGGAAAAGGAATCCCTAAAATCT-CCATTATTTACTCTTAAATGCTAAGCATAAACATCTCCAGC---TTCTTCAAAGTTCCTTACAGACCCAACAATTTTAGCCCTAGATTTGTTCTACTATTTGTTTCTTCAATGGCGTCTTCAACAAAAGTCACAGTTGAGTACGCGAAATCCGGTCGATCGTCATGTAAGAAATGCGACGAGAAGATTCCGGCGAAATCCGTAAGGCTGGGATTGGTGTCAAAACATCCTCAAGGCTTTGACCAGACAAAATGGCATCATCTCGATTGTTTCCCTTTCAGTTCTGATTTCGTTTCCTCTGTGGAAGACATCACTGGATTCTCATTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAAGATAAAGAAACATTGGAGAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E563858" ref_strand="+" ref_description="SGN-E563858 [2299]">
      <seq>cccggctgcaggaatcggcacgagaaacagtctttaatggcgggaaaaggaatccctaaaatctccattatttactcttaaatgctaagcataaacatctccagcttcttcaaagttccttacagacccaacaattttagccctaggatttgttctactatttgtttcttcaatggcgtcttcaacaaaagtcacagttgagtacgcgaaatccggtcgatcgtcatgtaagaaatgcgacgagaagattccggcgaaatccgtaaggctgggattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="54926" stop="55787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55236" g_stop="55487" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="278" r_length="248" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E563858" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>252</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E563858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55236" e_stop="55487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTAATGGGCGGGAAAAGGAATCCCTAAAATCTCCCATTATTTACTCTTAAATGCTAAGCATAAACATCTCCAGCTTCTTCTTCAAAGTTCCTTCCAGAACCAACAATTTTAACCCTA-GATTAATTCTACTATTTTTTTCTCCAATGGCGTCTTCTACAAAAGTCACAGTTGAGTATGCGAAATCCGGTCGATCGTCATGTAAGAAATGCGATGAGAAGATTCCGGCGAAATCAGTAAGGCTGGGATTAG</genome_strand>
        <mrna_strand>TCTTTAAT-GGCGGGAAAAGGAATCCCTAAAATCT-CCATTATTTACTCTTAAATGCTAAGCATAAACATCTCCAGCTTC---TTCAAAGTTCCTTACAGACCCAACAATTTTAGCCCTAGGATTTGTTCTACTATTTGTTTCTTCAATGGCGTCTTCAACAAAAGTCACAGTTGAGTACGCGAAATCCGGTCGATCGTCATGTAAGAAATGCGACGAGAAGATTCCGGCGAAATCCGTAAGGCTGGGATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E398449" ref_strand="+" ref_description="SGN-E398449 [TUS-16-K6]">
      <seq>ggaaaaggaatccctaaaatctcccattatttactcttaaatgctaagcataaacatctccagcttcttcttcaaagttccttccagaaccaacaattttaaccctagattaattctactatttttttctccaatggcgtcttctacaaaagtcacagttgagtatgcgaaatccggtcgatcgtcatgtaagaaatgcgatgagaagattccggcgaaatcagtaaggctgggattagtgtcaaaacaccctcaaggctttgaccagacgaaatggcatcatctcgattgtttccctttcaattctgatttcgtttcctctgtggaagacatcgctggtttctcattgctccagaacaaagataaagaaactttggagaaactgattagcaccgagattgcaactttgcagaaggtttctgatgcagactcagataagattgacagaaaacaaaaggaaacccgtgcacaggaagactcggagcacgaactgagcaagcaaaagcgactaaagctgtcggccactgaagaggaacctgtgttggagatagcattctccatttctgatgtgagggacacttataaggatgctaaattgttaccaaaatggagggcgtttcagactattatatatcttgaacagggtgatgggcgtcatgcttcaagtaaaattgccgcctttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="54949" stop="59888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55249" g_stop="55603" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55604" i_stop="56348" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56349" g_stop="56408" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="415" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56409" i_stop="56811" i_length="403">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.430" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56812" g_stop="56868" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="472" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56869" i_stop="56961" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.508" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56962" g_stop="57003" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="514" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57004" i_stop="58526" i_length="1523">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58527" g_stop="58598" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="586" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58599" i_stop="58976" i_length="378">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58977" g_stop="59033" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="643" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="59034" i_stop="59547" i_length="514">
            <donor d_prob="0.631" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="59548" g_stop="59588" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="684" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E398449" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55249" e_stop="55603"/>
          <exon e_start="56349" e_stop="56408"/>
          <exon e_start="56812" e_stop="56868"/>
          <exon e_start="56962" e_stop="57003"/>
          <exon e_start="58527" e_stop="58598"/>
          <exon e_start="58977" e_stop="59033"/>
          <exon e_start="59548" e_stop="59588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGGAATCCCTAAAATCTCCCATTATTTACTCTTAAATGCTAAGCATAAACATCTCCAGCTTCTTCTTCAAAGTTCCTTCCAGAACCAACAATTTTAACCCTAGATTAATTCTACTATTTTTTTCTCCAATGGCGTCTTCTACAAAAGTCACAGTTGAGTATGCGAAATCCGGTCGATCGTCATGTAAGAAATGCGATGAGAAGATTCCGGCGAAATCAGTAAGGCTGGGATTAGTGTCAAAACACCCTCAAGGCTTTGACCAGACGAAATGGCATCATCTCGATTGTTTCCCTTTCAATTCTGATTTCGTTTCCTCTGTGGAAGACATCGCTGGTTTCTCATTGCTCCAGGTATACATTTCTAAAACTCTGACTAAATTTAAGCTTAATTTTGCAATTTGCATGTGGAGTATTTACTGAATTATTTGGAGTGACGAGTCAAAAATACATGTCTCCATTTTTTTTTTTGAGTTTGATATGTGAACTGAACTATCACGTGTGTGAGTTTTTTAGCTAAACTATAACCAATTATTTATCAAAATACACCTTAACTATCAATTGTTCCTATTTCCTACATTAACTTGGTGATATTTTAGGTAGTAAAAGAGAACAACTTATGTATGAATGTCTTTTGATAAATAGTTGATTATAGTTGAGTAGTAAACTCACAAATAATTTAGATATGAAACTTGAAAAACCTCAATACTTTAGGGGTATTTTTTTATCATTATTTTCCAATATGCATTTGTAGCCGTTTGTTTGATTTTCCATTCATGTGAAAAAAAGTATCTTCTTTTAGTTGTATCTATAGGTGAGCATGGCATAAATTATCTTTCGCTAGAGCTACGTGTATGAACTTTTGTTAAATATATACCTGCAGTCCTGCACTAAGTCAATTTTGTTATCAAATAGTTGTAGGTGCATGCGATTGTATTTGACACCACCTGACTTGGAGCAGCTTTATTTCATTATAGAGTCTTTTTGCCATCTTGATAAACTATCTTTATTCTCAGTGTTTTATTTGATAACTAAAAGGTTTTCTTTTAGTTGATAATATTCTTCGTTGCAGCTAAGCTTGTCTTTCTGATTTATGCAGAACAAAGATAAAGAAACTTTGGAGAAACTGATTAGCACCGAGATTGCAACTTTGCAGAAGGTGCTGTCTTCTTTAGTGTTTAAATTCTTTAGGCATTTGTAATGCAAGTATAAAGTGCTTGTTATGGTAGCATAGTAGCAGCTTACCATTTACAAATATATGTAGGCTGAAATTGACTCCACTTAGAATTCCCTCTATTTGAAACTCGAGACATGAGTTTGACCAAGTCTGCTGCTTCAAATCCTTTTCTAGTTTTCTTTAATTTAGAAATGTTTCAACTTATCTGGTCATAGTTGCCAAATTTTCACCTGTTGCTTTTACTTCCTGAAGTATGAAGCTTTGCTGGACTTATTTTATTCCCGAGTTTGTACTATTATGTAAATTTTAAAGTTGAGGTACCCTGTCGAACAAGTCAGTTTGTTGGAACTTCACTTGTGCTGACAATGAAGCGATTAATCAACAGGTTTCTGATGCAGACTCAGATAAGATTGACAGAAAACAAAAGGAAACCCGTGCACAGGTAAAGTCAAGTGATAGTGAATCTGTTATTTTTTGCTATTAACTTATTTATTATCACTGCTTTCCTGCATCTGGCTTATAAACATATGAGAAGGAAGACTCGGAGCACGAACTGAGCAAGCAAAAGCGACTAAAGGTAAATATTGCTGTTCCCACTTGAAGTTTCCAGTAGATTTTTTATGAGTAAAAGGAAACTAGAAGCCACAACTTGAATTTATTTTTGTATCCAGTTGCATTACTTTGATTTAGTCTTATTTGATTATAGCTGTATAGGTAATTTTATCTGTTGTTTAGTCTTATTTGTTCATCAGTGTTTATTATTACTATTTATTGCTGTATTTGCTTTGTATTCTGTTAATTTTTTCTGTTTTATTGTCTTATAATTATGTTTCGGATTCTTCTTTTATTATGAGCCGATGTTCTTTCAATAACAGTTTCTACCCCATAAAGGTAGGGGTAAGGTCTGCGTACATCCTACCTTTCCTAGACCCCACTTGTGGGATTGCACTAGGAATGTTGTTGTTGCTGCTGAGTATAGGTGATGATATTGAGTACAGGTAGTGGTATCAAGTTAACTATGTAATATTCGTATATGAGAATGTGCATACCAGGTTAAGCACTCTCCTATGGAAAGCTTATTTGGTACTATTGTTTGCCAAAATTGTCCTCCCATCAATTTAGCATGTCTGAGTACTACGTTATTTGAGTAGTAGAATTATGGAGAATTTTAATTGCAGATGAATGCATTAATTTTTTCATTTCATAGATGTTTTCTAATATGCTGTTCCACTATTGGTTTTTTGTTTCTCATTTGATTTTTTCAGGCCCTCTGTGTCTCCCTTTTAACAAATCAAACTCCATTGAAATATTAAGCATATTATGTTGATTCCATAAAGCATCATGCACCTAGATGTTTTTTTATTTGTTTGATAATGTGCACCTAGATGTTATTGTAGTGCTTCCTTCTTTCCCAAGATATCCTAGAGCCAACTATAGAAGCAATTGGTCTTGTATAACAATTTTCTAAAGTATACCCTTCTTAGAAGCTTGTGAACTGTAGAAGAACCGTGACCAGGAAATGAGATGTCAAGAGTTTTCACCAATCTTTTGTACTTATTTCTGTGGATTTTTAGTGAATCAGAAGCATCATTCTCTATGGCATGTCAACAGGTTTATGGTAAATACGGGAGAATAATCGGGAGACATTATATTCTTTGGTCTTTCTGCACTATGTTTGCACTTGTCAGGGCAAACATTAACATGCATGTACAAATCATCTAGCCAGTCCAGAATGCAGATATTGTTTTTGGTGCTTGCATGCTTACAACTAAAATTGTTTTTGGTCATACAAAGTAGAGATGATTAGCATCTTCCCTTACATGGTCGGGATAGCCTTCAGGCTTTACCTGATCCGAGCAGTTGTCTCTGCTTTTCATTTTTGGTATCGCTATCCCGCACTGAAGTTGGCAATAAGATAAACTTAAACCACCGATAAACTTTGAATAGATCTTGAAATGAAAGATGACTTTGTTGATTAGTCTGCACGATTCCATAAGCAGTAAGTTCTCGTGTTATTGTAGCATCTCTTTATGGTTGTCTCCTTTCCATTTTAGTTGAACCGACTCTCTAAGCATGTCTTGCATGGCAAAATTCTTTTAGCTGTCGGCCACTGAAGAGGAACCTGTGTTGGAGATAGCATTCTCCATTTCTGATGTGAGGGACACTTATAAGGTACGATATCTGGCATCTCTCAGAATCAGTAATCCCCTGTCTCCACTTCTTAGAGCAGTAAAAATTGAATGGAAAGGATAGAACCGGAAAAGATTTTGTTTGTATTCCTTTATTATTTTTTCTCTATAGGTTTTGATTTTTCATAGGATGGCATTTTAACGGCAATGTTTTAAGATATAGCTGCTTATTGATTTGGCTTTTAACTAATTAACTGATTCCCTTGCTGCCTCATTTTGACGATATGAAAATGAATGGTCTTTTTTAGCTTCTGTGCTACCTTTTATTTTTTACTGCAGTTTTATATTTGTATTAAAAACAAGGGCCACTGATCAGATATTTGGCACTTTGTTCTGATGGGAGCACTATTTCTTTTCTCAGGATGCTAAATTGTTACCAAAATGGAGGGCGTTTCAGACTATTATATATCTTGAACAGGTTAGTTGATTAATTATTTGATGAATACGTTGACCAAGTTGTATGGGGTTTTCCATTGAGTACATGAAGATAGCATTTTGCTGTGGTAGTAGTGGGGCCAGGGTGTTGTTGAGTAGATATTCAACATATTCACTCTGTGTGATGCTAGTATGTAGGTGTACTCTTCTTTGCCAGCATCTCACAGCTGCAATTTCTCTCATAATTCTCATTCTACACTTGAAAATTTTCCTTCTCCAATTTTATATGACATCTTTTTGACATATTATTCAACCTTGTTCATTGTTTGAACTTTTATTTTGACCACTACTTTGGTCAATGAGTCAATGATGAAATAATAATCTCTTCATACTTCTTTTGATTGATGTTCTAGTCTAACTTGTATGACCTCTAATGGGATGGAATATTATCAGATACAGAGCTAGACGCATGGCGTGGAGGCTTGTATTCTAGCACTGATTTGGCATGTGATCAAAAGACCTCCTTTTCACCTTTATGTACTTTTTTGGGTTTTTAGGGTGATGGGCGTCATGCTTCAAGTAAAATTGCCGCCTTTGA</genome_strand>
        <mrna_strand>GGAAAAGGAATCCCTAAAATCTCCCATTATTTACTCTTAAATGCTAAGCATAAACATCTCCAGCTTCTTCTTCAAAGTTCCTTCCAGAACCAACAATTTTAACCCTAGATTAATTCTACTATTTTTTTCTCCAATGGCGTCTTCTACAAAAGTCACAGTTGAGTATGCGAAATCCGGTCGATCGTCATGTAAGAAATGCGATGAGAAGATTCCGGCGAAATCAGTAAGGCTGGGATTAGTGTCAAAACACCCTCAAGGCTTTGACCAGACGAAATGGCATCATCTCGATTGTTTCCCTTTCAATTCTGATTTCGTTTCCTCTGTGGAAGACATCGCTGGTTTCTCATTGCTCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAAGATAAAGAAACTTTGGAGAAACTGATTAGCACCGAGATTGCAACTTTGCAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTGATGCAGACTCAGATAAGATTGACAGAAAACAAAAGGAAACCCGTGCACAG.............................................................................................GAAGACTCGGAGCACGAACTGAGCAAGCAAAAGCGACTAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCGGCCACTGAAGAGGAACCTGTGTTGGAGATAGCATTCTCCATTTCTGATGTGAGGGACACTTATAAG..........................................................................................................................................................................................................................................................................................................................................................................................GATGCTAAATTGTTACCAAAATGGAGGGCGTTTCAGACTATTATATATCTTGAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATGGGCGTCATGCTTCAAGTAAAATTGCCGCCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E206354" ref_strand="+" ref_description="SGN-E206354 [cLEC-23-F23]">
      <seq>ggaaaaggaatccctaaaatctcccattatttactcttaaatgctaagcataaacatctccagcttcttcttcaaagttccttccagaaccaacaatcttaaccctagattaatactactatttttttctccaatggcgacttctacaaaagtcacagttgagtatgcgaaatccggtcgatcgtcatgtgagaaatgcgatgagaagatttcggcgaaatcagtaaggctgggattagtgtcaaaacaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="54949" stop="55800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55249" g_stop="55500" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E206354" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>252</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55249" e_stop="55500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGGAATCCCTAAAATCTCCCATTATTTACTCTTAAATGCTAAGCATAAACATCTCCAGCTTCTTCTTCAAAGTTCCTTCCAGAACCAACAATTTTAACCCTAGATTAATTCTACTATTTTTTTCTCCAATGGCGTCTTCTACAAAAGTCACAGTTGAGTATGCGAAATCCGGTCGATCGTCATGTAAGAAATGCGATGAGAAGATTCCGGCGAAATCAGTAAGGCTGGGATTAGTGTCAAAACACCC</genome_strand>
        <mrna_strand>GGAAAAGGAATCCCTAAAATCTCCCATTATTTACTCTTAAATGCTAAGCATAAACATCTCCAGCTTCTTCTTCAAAGTTCCTTCCAGAACCAACAATCTTAACCCTAGATTAATACTACTATTTTTTTCTCCAATGGCGACTTCTACAAAAGTCACAGTTGAGTATGCGAAATCCGGTCGATCGTCATGTGAGAAATGCGATGAGAAGATTTCGGCGAAATCAGTAAGGCTGGGATTAGTGTCAAAACACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E269552" ref_strand="+" ref_description="SGN-E269552 [cLEM-2-O17]">
      <seq>cctaaaatctcccattatttactcttaaatgctaagcataaacatctccagcttcttcttcaaagttccttccagaaccaacaattttaaccctagattaattctactatttttttctccaatggcgtcttctacaaaagtcacagttgagtatgcgaaatccggtcgatcgtcatgtaagaaatgcgatgagaagattccggcgaaatcagtaaggctgggattagtgtcaaaacaccctcaaggctttgaccagacgaaatggcatcatctcgattgtttccctttcaattctgatttcgtttcctctgtggaagacatcgctggtttctcattgctccagaacaaagataaagaaactttggagaaactgattagcaccgagattgcaactttgcagaaggtttctgatgcagactcagataagattgacagaaaacaaaaggaaacccgtgcacaggaagactcggagcacgaactgagcaagcaaaagcgactaaagctgtcggccactgaagaggaacctgtgttggagatagcattctccatttctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="54961" stop="58880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55261" g_stop="55603" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55604" i_stop="56348" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56349" g_stop="56408" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="403" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56409" i_stop="56811" i_length="403">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.430" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56812" g_stop="56868" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="460" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56869" i_stop="56961" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.508" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56962" g_stop="57003" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="502" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57004" i_stop="58526" i_length="1523">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58527" g_stop="58580" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="556" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E269552" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55261" e_stop="55603"/>
          <exon e_start="56349" e_stop="56408"/>
          <exon e_start="56812" e_stop="56868"/>
          <exon e_start="56962" e_stop="57003"/>
          <exon e_start="58527" e_stop="58580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAAATCTCCCATTATTTACTCTTAAATGCTAAGCATAAACATCTCCAGCTTCTTCTTCAAAGTTCCTTCCAGAACCAACAATTTTAACCCTAGATTAATTCTACTATTTTTTTCTCCAATGGCGTCTTCTACAAAAGTCACAGTTGAGTATGCGAAATCCGGTCGATCGTCATGTAAGAAATGCGATGAGAAGATTCCGGCGAAATCAGTAAGGCTGGGATTAGTGTCAAAACACCCTCAAGGCTTTGACCAGACGAAATGGCATCATCTCGATTGTTTCCCTTTCAATTCTGATTTCGTTTCCTCTGTGGAAGACATCGCTGGTTTCTCATTGCTCCAGGTATACATTTCTAAAACTCTGACTAAATTTAAGCTTAATTTTGCAATTTGCATGTGGAGTATTTACTGAATTATTTGGAGTGACGAGTCAAAAATACATGTCTCCATTTTTTTTTTTGAGTTTGATATGTGAACTGAACTATCACGTGTGTGAGTTTTTTAGCTAAACTATAACCAATTATTTATCAAAATACACCTTAACTATCAATTGTTCCTATTTCCTACATTAACTTGGTGATATTTTAGGTAGTAAAAGAGAACAACTTATGTATGAATGTCTTTTGATAAATAGTTGATTATAGTTGAGTAGTAAACTCACAAATAATTTAGATATGAAACTTGAAAAACCTCAATACTTTAGGGGTATTTTTTTATCATTATTTTCCAATATGCATTTGTAGCCGTTTGTTTGATTTTCCATTCATGTGAAAAAAAGTATCTTCTTTTAGTTGTATCTATAGGTGAGCATGGCATAAATTATCTTTCGCTAGAGCTACGTGTATGAACTTTTGTTAAATATATACCTGCAGTCCTGCACTAAGTCAATTTTGTTATCAAATAGTTGTAGGTGCATGCGATTGTATTTGACACCACCTGACTTGGAGCAGCTTTATTTCATTATAGAGTCTTTTTGCCATCTTGATAAACTATCTTTATTCTCAGTGTTTTATTTGATAACTAAAAGGTTTTCTTTTAGTTGATAATATTCTTCGTTGCAGCTAAGCTTGTCTTTCTGATTTATGCAGAACAAAGATAAAGAAACTTTGGAGAAACTGATTAGCACCGAGATTGCAACTTTGCAGAAGGTGCTGTCTTCTTTAGTGTTTAAATTCTTTAGGCATTTGTAATGCAAGTATAAAGTGCTTGTTATGGTAGCATAGTAGCAGCTTACCATTTACAAATATATGTAGGCTGAAATTGACTCCACTTAGAATTCCCTCTATTTGAAACTCGAGACATGAGTTTGACCAAGTCTGCTGCTTCAAATCCTTTTCTAGTTTTCTTTAATTTAGAAATGTTTCAACTTATCTGGTCATAGTTGCCAAATTTTCACCTGTTGCTTTTACTTCCTGAAGTATGAAGCTTTGCTGGACTTATTTTATTCCCGAGTTTGTACTATTATGTAAATTTTAAAGTTGAGGTACCCTGTCGAACAAGTCAGTTTGTTGGAACTTCACTTGTGCTGACAATGAAGCGATTAATCAACAGGTTTCTGATGCAGACTCAGATAAGATTGACAGAAAACAAAAGGAAACCCGTGCACAGGTAAAGTCAAGTGATAGTGAATCTGTTATTTTTTGCTATTAACTTATTTATTATCACTGCTTTCCTGCATCTGGCTTATAAACATATGAGAAGGAAGACTCGGAGCACGAACTGAGCAAGCAAAAGCGACTAAAGGTAAATATTGCTGTTCCCACTTGAAGTTTCCAGTAGATTTTTTATGAGTAAAAGGAAACTAGAAGCCACAACTTGAATTTATTTTTGTATCCAGTTGCATTACTTTGATTTAGTCTTATTTGATTATAGCTGTATAGGTAATTTTATCTGTTGTTTAGTCTTATTTGTTCATCAGTGTTTATTATTACTATTTATTGCTGTATTTGCTTTGTATTCTGTTAATTTTTTCTGTTTTATTGTCTTATAATTATGTTTCGGATTCTTCTTTTATTATGAGCCGATGTTCTTTCAATAACAGTTTCTACCCCATAAAGGTAGGGGTAAGGTCTGCGTACATCCTACCTTTCCTAGACCCCACTTGTGGGATTGCACTAGGAATGTTGTTGTTGCTGCTGAGTATAGGTGATGATATTGAGTACAGGTAGTGGTATCAAGTTAACTATGTAATATTCGTATATGAGAATGTGCATACCAGGTTAAGCACTCTCCTATGGAAAGCTTATTTGGTACTATTGTTTGCCAAAATTGTCCTCCCATCAATTTAGCATGTCTGAGTACTACGTTATTTGAGTAGTAGAATTATGGAGAATTTTAATTGCAGATGAATGCATTAATTTTTTCATTTCATAGATGTTTTCTAATATGCTGTTCCACTATTGGTTTTTTGTTTCTCATTTGATTTTTTCAGGCCCTCTGTGTCTCCCTTTTAACAAATCAAACTCCATTGAAATATTAAGCATATTATGTTGATTCCATAAAGCATCATGCACCTAGATGTTTTTTTATTTGTTTGATAATGTGCACCTAGATGTTATTGTAGTGCTTCCTTCTTTCCCAAGATATCCTAGAGCCAACTATAGAAGCAATTGGTCTTGTATAACAATTTTCTAAAGTATACCCTTCTTAGAAGCTTGTGAACTGTAGAAGAACCGTGACCAGGAAATGAGATGTCAAGAGTTTTCACCAATCTTTTGTACTTATTTCTGTGGATTTTTAGTGAATCAGAAGCATCATTCTCTATGGCATGTCAACAGGTTTATGGTAAATACGGGAGAATAATCGGGAGACATTATATTCTTTGGTCTTTCTGCACTATGTTTGCACTTGTCAGGGCAAACATTAACATGCATGTACAAATCATCTAGCCAGTCCAGAATGCAGATATTGTTTTTGGTGCTTGCATGCTTACAACTAAAATTGTTTTTGGTCATACAAAGTAGAGATGATTAGCATCTTCCCTTACATGGTCGGGATAGCCTTCAGGCTTTACCTGATCCGAGCAGTTGTCTCTGCTTTTCATTTTTGGTATCGCTATCCCGCACTGAAGTTGGCAATAAGATAAACTTAAACCACCGATAAACTTTGAATAGATCTTGAAATGAAAGATGACTTTGTTGATTAGTCTGCACGATTCCATAAGCAGTAAGTTCTCGTGTTATTGTAGCATCTCTTTATGGTTGTCTCCTTTCCATTTTAGTTGAACCGACTCTCTAAGCATGTCTTGCATGGCAAAATTCTTTTAGCTGTCGGCCACTGAAGAGGAACCTGTGTTGGAGATAGCATTCTCCATTTCTGAT</genome_strand>
        <mrna_strand>CCTAAAATCTCCCATTATTTACTCTTAAATGCTAAGCATAAACATCTCCAGCTTCTTCTTCAAAGTTCCTTCCAGAACCAACAATTTTAACCCTAGATTAATTCTACTATTTTTTTCTCCAATGGCGTCTTCTACAAAAGTCACAGTTGAGTATGCGAAATCCGGTCGATCGTCATGTAAGAAATGCGATGAGAAGATTCCGGCGAAATCAGTAAGGCTGGGATTAGTGTCAAAACACCCTCAAGGCTTTGACCAGACGAAATGGCATCATCTCGATTGTTTCCCTTTCAATTCTGATTTCGTTTCCTCTGTGGAAGACATCGCTGGTTTCTCATTGCTCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAAGATAAAGAAACTTTGGAGAAACTGATTAGCACCGAGATTGCAACTTTGCAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTGATGCAGACTCAGATAAGATTGACAGAAAACAAAAGGAAACCCGTGCACAG.............................................................................................GAAGACTCGGAGCACGAACTGAGCAAGCAAAAGCGACTAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCGGCCACTGAAGAGGAACCTGTGTTGGAGATAGCATTCTCCATTTCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E589633" ref_strand="-" ref_description="SGN-E589633 [43211]">
      <seq>gaagaggaacctgtgttggagatggcctttctattttgatgtgagggacacttataaggatgctatattgttaccaaagtggagggcatttcagacgattatatatcttgaacaggacgatgggcttcatgcttcaagtaaaattgctgcctttgattttgatggttgtcttgcaaatacaaatgtgagaagagttggtgcagatgcttggtctctgatgcatccttcaatcccggagaagctgcagagcttgtacaatgatggctataagctggtaatttttactaatgaatccaacattgagcgctggaagaaaagtaggcaggcagctgtggactcgaaaattggacgacttgaacaattcatcaaagttgctggcgttccaattcaggttttcatcgcttgtggcttgagtaagatcaagccagaagatccctttcgcaagcctaagacggggatgtggaatattatgaaaaagcagttcaattctggagttcccatagacatggaccagtctttctatgttggtgatgctgctggcagacaaggtgaccatagtgatgctgatattagatttgcgcaggctattggactaaaattttatgttnccagaggaattctttgagaaggaaacttgacaatgacaatgagaaagagcattttgtttcgtgtaacatctactacagtagaaagtaactgtctgagctaaagtagaaggaacatgcgtacaactctttccctgcaaanggggttgacatttgtgttaacagttcttccgttatctacccttggattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="58239" stop="62266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58539" g_stop="58598" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58599" i_stop="58976" i_length="378">
            <donor d_prob="0.983" d_score="0.90"/>
            <acceptor a_prob="0.808" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58977" g_stop="59033" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="115" r_length="57" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59034" i_stop="59547" i_length="514">
            <donor d_prob="0.631" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59548" g_stop="59624" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="192" r_length="77" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59625" i_stop="60707" i_length="1083">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.899" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60708" g_stop="60789" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="274" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60790" i_stop="60933" i_length="144">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60934" g_stop="61050" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="391" r_length="117" r_score="0.949"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61051" i_stop="61382" i_length="332">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61383" g_stop="61504" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="513" r_length="122" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="61505" i_stop="61599" i_length="95">
            <donor d_prob="0.784" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="61600" g_stop="61669" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="583" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="61670" i_stop="61762" i_length="93">
            <donor d_prob="0.945" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="61763" g_stop="61966" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="798" r_length="215" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E589633" ref_strand="-">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589633" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="58539" e_stop="58598"/>
          <exon e_start="58977" e_stop="59033"/>
          <exon e_start="59548" e_stop="59624"/>
          <exon e_start="60708" e_stop="60789"/>
          <exon e_start="60934" e_stop="61050"/>
          <exon e_start="61383" e_stop="61504"/>
          <exon e_start="61600" e_stop="61669"/>
          <exon e_start="61763" e_stop="61966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGGAACCTGTGTTGGAGATAGCATTCTCCATTTCTGATGTGAGGGACACTTATAAGGTACGATATCTGGCATCTCTCAGAATCAGTAATCCCCTGTCTCCACTTCTTAGAGCAGTAAAAATTGAATGGAAAGGATAGAACCGGAAAAGATTTTGTTTGTATTCCTTTATTATTTTTTCTCTATAGGTTTTGATTTTTCATAGGATGGCATTTTAACGGCAATGTTTTAAGATATAGCTGCTTATTGATTTGGCTTTTAACTAATTAACTGATTCCCTTGCTGCCTCATTTTGACGATATGAAAATGAATGGTCTTTTTTAGCTTCTGTGCTACCTTTTATTTTTTACTGCAGTTTTATATTTGTATTAAAAACAAGGGCCACTGATCAGATATTTGGCACTTTGTTCTGATGGGAGCACTATTTCTTTTCTCAGGATGCTAAATTGTTACCAAAATGGAGGGCGTTTCAGACTATTATATATCTTGAACAGGTTAGTTGATTAATTATTTGATGAATACGTTGACCAAGTTGTATGGGGTTTTCCATTGAGTACATGAAGATAGCATTTTGCTGTGGTAGTAGTGGGGCCAGGGTGTTGTTGAGTAGATATTCAACATATTCACTCTGTGTGATGCTAGTATGTAGGTGTACTCTTCTTTGCCAGCATCTCACAGCTGCAATTTCTCTCATAATTCTCATTCTACACTTGAAAATTTTCCTTCTCCAATTTTATATGACATCTTTTTGACATATTATTCAACCTTGTTCATTGTTTGAACTTTTATTTTGACCACTACTTTGGTCAATGAGTCAATGATGAAATAATAATCTCTTCATACTTCTTTTGATTGATGTTCTAGTCTAACTTGTATGACCTCTAATGGGATGGAATATTATCAGATACAGAGCTAGACGCATGGCGTGGAGGCTTGTATTCTAGCACTGATTTGGCATGTGATCAAAAGACCTCCTTTTCACCTTTATGTACTTTTTTGGGTTTTTAGGGTGATGGGCGTCATGCTTCAAGTAAAATTGCCGCCTTTGATTTTGATGGTTGTCTTGCAAATACAAATGTGAGAAGGTATGGTTTCTTCCTGTGTTTCATATTATTAAAAACTCTTCTTGAGATGAGAGCGTGTATATGATAATTATTGCAACTCTAAATAATGCATGATTGGAGCTTAAGCTAACTCTAGAATGTATGAAAATACAGGATTTAATAGGAAACGAATTGTCATGTTTTTAACAAGTCTAAACAGTTATTGCTTGTCCCAAAGTAGTAGCTGTGTTACAATGATGAATATTATATTAAGCATTTAAGACATACATCCAACTATCTGTATATAGAGATATCCTTGCCCTAAAATAACCCAAAAAAAAAGGAGCACTTAATTCTCCACTAAGGCCTCTCATTTCTAGTTTTTCCTCTTTAAGTCTCCCAGAATATACATGTAGGCATAAAGGCACTACTTCCCTGATGCAATCTCTCTTCCTAGTTCCTAGTGTTGCTTTCTCCAAGTTGTTGAGTTCTCATTCACTGTTTTTTGGAAGTACTTAAGTCTAAAGTAATCAAAATACGTATAAATAGAACTCTATAAGGTAGGCAAATCACAGTGTAAAAAAGTTTTTTGTGTGTTCCCTCCATTATTGACCTACCCTTTCTTTCTAAAGTTGTAGCTATGAGAGTGCATGTCAACTTGTGACTTTTTGTGAAAAAAAATTGATTTCCTTGAACCTTGGCTTTCTAAATGATTTATGCGAGAACCTTTTACTAGTAGCCATATTATTTTGCTTTCTACCACCCAAAATTCATAACTAAAGATTTTAGCTAGGAATTCCTCCATGCCTTCCATTTTCATTTTTAAACTGTTCGGTGTATTTTTTTTCTTCAAAAAAGGGATGTGGAGATGTACTGATTTCTTCAATAGTTCTATTGACACCAAATACACAGCTATTTGTTTGCATCGTTTATTAGTGTATTGGTGACTTTGTCAAAAAGAGAAGTACTCCGTCTAGGGTGAATACTATGTTTTAACATCCTCTCTCTCTTTATTAGTTTTCTGGATGGACTATGTATACCAATGTCATAAATATTCTAGAATTAGATTATTGCTTTTAAAGTCGAACTTCTCTTTTTGATGTGATGGAGTTCCATTTTTCTCAGAGTTGGTGCAGATGCTTGGTCTCTGATGCATCCTTCAATCCCAGAGAAGCTGCAGAGCTTGTACAATGAAGGCTATAAGCTGGTGGGCATCCCTTTTGTAGTGTCTAAATATCATGTTTAATTCTTATGCTGCTGTATATTAAGTCACTAAGTGGATTTAAGTATGTTTGATAAGTTCATCACATTCTCTGCAAATCAGCCATCTTATTTTTATTAATACGTGCAGGTAATTTTTACCAATGAATCCAACATTGAGCGGTGGAAAAAAAGTAGGCAGGCAGCTGTGGACTCTAAAATTGGACGACTTGAACAATTTATCAAAGTTGCTGGTGTTCCAATTCAGGTGATTGGATCTGTTAGTATGTATCAACATTTTGGATCTAGCTAGTATTTTTCTTATGATGTAACGAGGGCCAATTCACTTTTAAATAGTAGCTGATAAGTTGCTTATTAGTGCCTGATCCTTCTGCAGCCCCTCACCCCCAGCAGAGTATAGGAAAATGGAGAAAAAGGAAGTGTCCTCTCAGATTAATCTCTTTTTGACTTTTATTTGTTGTTGGTGATGGGTCATGCTTTGTGGGTGGGGTGGCAGGTTCCTTCATAAGTGTGAAAATAGCAGAGAGAATAATCTGCTAGAACTCTCTGTAAATAGTTCTCATAGCTCTGTTGATGCAGGTTTTCATCGCTTGTGGCTTGAGTAAGATCAAGCCAGAAGATCCATTTCGCAAGCCTAAGACCGGGATGTGGAATATAATGAAAAAGCAGTTCAATTCTGGAGTTCCCATAGACATGGACCAGTTATTTCCTCTTCCTTGGTCGATAGCCCAATTTTAAATATATTACTTCCTAATCATTGACAAATCTAACAGAGCTTTTCTTATTGTCATTCTAGGTCTTTCTATGTTGGTGATGCTGCTGGCAGACAAGGTGACCACAGTGATGCTGATATTAGATTTGCGCAGGTACCTAATTCTGCTGACGTTTTAAGATGACACACCTTCAATGCACTTGACCAACAAATTACACCATGGGCTTCCATTTGTTTTTTGTTGCAGGCGATTGGACTAAAATTTTATGTT-CCAGAGGAATTCTTTGAGAAGGAAACTTGACAATGACAAT------GAGCATTTTG-TT-GTGTAACATCTACTACAGTAGAAAGAAACTGTCTGAGCTGAAGTAGAAGGAACATGCGTTCAACTCTTTCCCAGCTAA-GGGGTTGACATTTGTGGAAATAGTTCTTTCCATATCTA-CCTTGGATTCTT</genome_strand>
        <mrna_strand>GAAGAGGAACCTGTGTTGGAGATGGCCTT-TCTATTT-TGATGTGAGGGACACTTATAAG..........................................................................................................................................................................................................................................................................................................................................................................................GATGCTATATTGTTACCAAAGTGGAGGGCATTTCAGACGATTATATATCTTGAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGATGGGCTTCATGCTTCAAGTAAAATTGCTGCCTTTGATTTTGATGGTTGTCTTGCAAATACAAATGTGAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTGCAGATGCTTGGTCTCTGATGCATCCTTCAATCCCGGAGAAGCTGCAGAGCTTGTACAATGATGGCTATAAGCTG................................................................................................................................................GTAATTTTTACTAATGAATCCAACATTGAGCGCTGGAAGAAAAGTAGGCAGGCAGCTGTGGACTCGAAAATTGGACGACTTGAACAATTCATCAAAGTTGCTGGCGTTCCAATTCAG............................................................................................................................................................................................................................................................................................................................................GTTTTCATCGCTTGTGGCTTGAGTAAGATCAAGCCAGAAGATCCCTTTCGCAAGCCTAAGACGGGGATGTGGAATATTATGAAAAAGCAGTTCAATTCTGGAGTTCCCATAGACATGGACCA...............................................................................................GTCTTTCTATGTTGGTGATGCTGCTGGCAGACAAGGTGACCATAGTGATGCTGATATTAGATTTGCGCAG.............................................................................................GCTATTGGACTAAAATTTTATGTTNCCAGAGGAATTCTTTGAGAAGGAAACTTGACAATGACAATGAGAAAGAGCATTTTGTTTCGTGTAACATCTACTACAGTAGAAAGTAACTGTCTGAGCTAAAGTAGAAGGAACATGCGTACAACTCTTTCCCTGCAAANGGGGTTGACATTTGTGTTAACAGTTCTTCCGTTATCTACCCTTGGATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E349252" ref_strand="+" ref_description="SGN-E349252 [cTOS-2-L7]">
      <seq>tcaatcccagagaagctgcagagcttgtacaatgaaggctataagctggtaatttttaccaatgaatccaacattgagcggtggaaaaaaagtaggcaggcagctgtggactctaaaattggacgacttgaacaatttatcaaagttgctggtgttccaattcaggttttcatcgcttgtggcttgagtaagatcaagccagaagatccatttcgcaagcctaagaccgggatgtggaatataatgaaaaagcagttcaattctggagttcccatagacatggaccagtctttctatgttggtgatgctgctggcagacaaggtgaccacagtgatgctgatattagatttgcgcaggcgattggactaaaattttatgttccagaggaattctttgagaaggaaacttgacaatgacaatgagcattttgttgtgtaacatctactacagtagaaagaaactgtctgagctgaagtagaaggaacatgcgttcaactctttcccagctaaggggttgacatttgtggaaatagttctttccatatctaccttggattcttatttaaatttatcgcctttttcatccttttggtgagatttctgcaaatacatacctcagtcctttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="60442" stop="62334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60742" g_stop="60789" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60790" i_stop="60933" i_length="144">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60934" g_stop="61050" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="165" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61051" i_stop="61382" i_length="332">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61383" g_stop="61504" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="287" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61505" i_stop="61599" i_length="95">
            <donor d_prob="0.784" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61600" g_stop="61669" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="357" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61670" i_stop="61762" i_length="93">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61763" g_stop="62034" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="629" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E349252" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60742" e_stop="60789"/>
          <exon e_start="60934" e_stop="61050"/>
          <exon e_start="61383" e_stop="61504"/>
          <exon e_start="61600" e_stop="61669"/>
          <exon e_start="61763" e_stop="62034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCCCAGAGAAGCTGCAGAGCTTGTACAATGAAGGCTATAAGCTGGTGGGCATCCCTTTTGTAGTGTCTAAATATCATGTTTAATTCTTATGCTGCTGTATATTAAGTCACTAAGTGGATTTAAGTATGTTTGATAAGTTCATCACATTCTCTGCAAATCAGCCATCTTATTTTTATTAATACGTGCAGGTAATTTTTACCAATGAATCCAACATTGAGCGGTGGAAAAAAAGTAGGCAGGCAGCTGTGGACTCTAAAATTGGACGACTTGAACAATTTATCAAAGTTGCTGGTGTTCCAATTCAGGTGATTGGATCTGTTAGTATGTATCAACATTTTGGATCTAGCTAGTATTTTTCTTATGATGTAACGAGGGCCAATTCACTTTTAAATAGTAGCTGATAAGTTGCTTATTAGTGCCTGATCCTTCTGCAGCCCCTCACCCCCAGCAGAGTATAGGAAAATGGAGAAAAAGGAAGTGTCCTCTCAGATTAATCTCTTTTTGACTTTTATTTGTTGTTGGTGATGGGTCATGCTTTGTGGGTGGGGTGGCAGGTTCCTTCATAAGTGTGAAAATAGCAGAGAGAATAATCTGCTAGAACTCTCTGTAAATAGTTCTCATAGCTCTGTTGATGCAGGTTTTCATCGCTTGTGGCTTGAGTAAGATCAAGCCAGAAGATCCATTTCGCAAGCCTAAGACCGGGATGTGGAATATAATGAAAAAGCAGTTCAATTCTGGAGTTCCCATAGACATGGACCAGTTATTTCCTCTTCCTTGGTCGATAGCCCAATTTTAAATATATTACTTCCTAATCATTGACAAATCTAACAGAGCTTTTCTTATTGTCATTCTAGGTCTTTCTATGTTGGTGATGCTGCTGGCAGACAAGGTGACCACAGTGATGCTGATATTAGATTTGCGCAGGTACCTAATTCTGCTGACGTTTTAAGATGACACACCTTCAATGCACTTGACCAACAAATTACACCATGGGCTTCCATTTGTTTTTTGTTGCAGGCGATTGGACTAAAATTTTATGTTCCAGAGGAATTCTTTGAGAAGGAAACTTGACAATGACAATGAGCATTTTGTTGTGTAACATCTACTACAGTAGAAAGAAACTGTCTGAGCTGAAGTAGAAGGAACATGCGTTCAACTCTTTCCCAGCTAAGGGGTTGACATTTGTGGAAATAGTTCTTTCCATATCTACCTTGGATTCTTATTTAAATTTATCGCCTTTTTCATCCTTTTGGTGAGATTTCTGCAAATACATACCTCAGTCCTTTTTG</genome_strand>
        <mrna_strand>TCAATCCCAGAGAAGCTGCAGAGCTTGTACAATGAAGGCTATAAGCTG................................................................................................................................................GTAATTTTTACCAATGAATCCAACATTGAGCGGTGGAAAAAAAGTAGGCAGGCAGCTGTGGACTCTAAAATTGGACGACTTGAACAATTTATCAAAGTTGCTGGTGTTCCAATTCAG............................................................................................................................................................................................................................................................................................................................................GTTTTCATCGCTTGTGGCTTGAGTAAGATCAAGCCAGAAGATCCATTTCGCAAGCCTAAGACCGGGATGTGGAATATAATGAAAAAGCAGTTCAATTCTGGAGTTCCCATAGACATGGACCA...............................................................................................GTCTTTCTATGTTGGTGATGCTGCTGGCAGACAAGGTGACCACAGTGATGCTGATATTAGATTTGCGCAG.............................................................................................GCGATTGGACTAAAATTTTATGTTCCAGAGGAATTCTTTGAGAAGGAAACTTGACAATGACAATGAGCATTTTGTTGTGTAACATCTACTACAGTAGAAAGAAACTGTCTGAGCTGAAGTAGAAGGAACATGCGTTCAACTCTTTCCCAGCTAAGGGGTTGACATTTGTGGAAATAGTTCTTTCCATATCTACCTTGGATTCTTATTTAAATTTATCGCCTTTTTCATCCTTTTGGTGAGATTTCTGCAAATACATACCTCAGTCCTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E308517" ref_strand="+" ref_description="SGN-E308517 [cLEY-21-J3]">
      <seq>taaaattggacgacttgaacaatttatcaaagttgctggtgttccaattcaggttttcatcgcttgtggcttgagtaagatcaagccagaagatccatttcgcaagcctaagaccgggatgtggaatataatgaaaaagcagttcaattctggagttcccatagacatggaccagtctttctatgttggtgatgctgctggcagacaaggtgaccacagtgatgctgatattagatttgcgcaggcgattggactaaaattttatgttccagaggaattctttgagaaggaaacttgacaatgacaatgagcattttgttgtgtaacatctactacagtagaaagaaactgtctgagctgaagtagaaggaacatgcgttcaactctttcccagctaaggggttgacatttgtggaaatagttctttccatatctaccttggattcttatttaaatttatcgcctttttcatccttttggtgagatttctgcaaatacatacctcagtcctttttgctttgtagacggatcaaagtttgcatgaaaccatttatccttcaaaattatgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="60699" stop="62388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60999" g_stop="61050" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61051" i_stop="61382" i_length="332">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61383" g_stop="61504" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="174" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61505" i_stop="61599" i_length="95">
            <donor d_prob="0.784" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61600" g_stop="61669" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="244" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61670" i_stop="61762" i_length="93">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61763" g_stop="62088" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="570" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="571" polyA_stop="581"/>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E308517" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60999" e_stop="61050"/>
          <exon e_start="61383" e_stop="61504"/>
          <exon e_start="61600" e_stop="61669"/>
          <exon e_start="61763" e_stop="62088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATTGGACGACTTGAACAATTTATCAAAGTTGCTGGTGTTCCAATTCAGGTGATTGGATCTGTTAGTATGTATCAACATTTTGGATCTAGCTAGTATTTTTCTTATGATGTAACGAGGGCCAATTCACTTTTAAATAGTAGCTGATAAGTTGCTTATTAGTGCCTGATCCTTCTGCAGCCCCTCACCCCCAGCAGAGTATAGGAAAATGGAGAAAAAGGAAGTGTCCTCTCAGATTAATCTCTTTTTGACTTTTATTTGTTGTTGGTGATGGGTCATGCTTTGTGGGTGGGGTGGCAGGTTCCTTCATAAGTGTGAAAATAGCAGAGAGAATAATCTGCTAGAACTCTCTGTAAATAGTTCTCATAGCTCTGTTGATGCAGGTTTTCATCGCTTGTGGCTTGAGTAAGATCAAGCCAGAAGATCCATTTCGCAAGCCTAAGACCGGGATGTGGAATATAATGAAAAAGCAGTTCAATTCTGGAGTTCCCATAGACATGGACCAGTTATTTCCTCTTCCTTGGTCGATAGCCCAATTTTAAATATATTACTTCCTAATCATTGACAAATCTAACAGAGCTTTTCTTATTGTCATTCTAGGTCTTTCTATGTTGGTGATGCTGCTGGCAGACAAGGTGACCACAGTGATGCTGATATTAGATTTGCGCAGGTACCTAATTCTGCTGACGTTTTAAGATGACACACCTTCAATGCACTTGACCAACAAATTACACCATGGGCTTCCATTTGTTTTTTGTTGCAGGCGATTGGACTAAAATTTTATGTTCCAGAGGAATTCTTTGAGAAGGAAACTTGACAATGACAATGAGCATTTTGTTGTGTAACATCTACTACAGTAGAAAGAAACTGTCTGAGCTGAAGTAGAAGGAACATGCGTTCAACTCTTTCCCAGCTAAGGGGTTGACATTTGTGGAAATAGTTCTTTCCATATCTACCTTGGATTCTTATTTAAATTTATCGCCTTTTTCATCCTTTTGGTGAGATTTCTGCAAATACATACCTCAGTCCTTTTTGCTTTGTAGACGGATCAAAGTTTGCATGAAACCATTTATCCTTCAAAATTATGAA</genome_strand>
        <mrna_strand>TAAAATTGGACGACTTGAACAATTTATCAAAGTTGCTGGTGTTCCAATTCAG............................................................................................................................................................................................................................................................................................................................................GTTTTCATCGCTTGTGGCTTGAGTAAGATCAAGCCAGAAGATCCATTTCGCAAGCCTAAGACCGGGATGTGGAATATAATGAAAAAGCAGTTCAATTCTGGAGTTCCCATAGACATGGACCA...............................................................................................GTCTTTCTATGTTGGTGATGCTGCTGGCAGACAAGGTGACCACAGTGATGCTGATATTAGATTTGCGCAG.............................................................................................GCGATTGGACTAAAATTTTATGTTCCAGAGGAATTCTTTGAGAAGGAAACTTGACAATGACAATGAGCATTTTGTTGTGTAACATCTACTACAGTAGAAAGAAACTGTCTGAGCTGAAGTAGAAGGAACATGCGTTCAACTCTTTCCCAGCTAAGGGGTTGACATTTGTGGAAATAGTTCTTTCCATATCTACCTTGGATTCTTATTTAAATTTATCGCCTTTTTCATCCTTTTGGTGAGATTTCTGCAAATACATACCTCAGTCCTTTTTGCTTTGTAGACGGATCAAAGTTTGCATGAAACCATTTATCCTTCAAAATTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E212647" ref_strand="+" ref_description="SGN-E212647 [cLEC-73-G23]">
      <seq>ttgcattagccaaccgttcgcttgttctcattctacattggtccgaaggatccgacccggtaggaaaccgggtgaagattgtacctgatctctctccgatcgaggctgagtatatatctgcgatcgagtggttagtgtttgatgatatcaaagttctagctttgggcacttctcgtgggtatttgttgatttattctctccgtggtgatctgattcataaacagatagtaagccctggaaagattcttagattgagagtccgtgataccaagagagatctaacccaagatgcatcatcagaagaggtctgtgttgttatgtcaggtgttattgctcggtttgatggatcagatattcagaatatgcttcagaggtggtttagagaaagacactctcagttctgggatgagacagaatctgaaaattctgcagatacttttgggaggcttccataccagctatggaatgttaataaatatggttcttgtgttgatgctgctatcactggtctgatgccccctcctctgctggagctacagtcaagtcagcgttattattgtgcaatcactgttggagctgacgctgtgatttctgcttatcgactttctgtagaccgaagcagatcaatagtaggggctattctctccaaggttgtgcctgcgactttttcaacataacttncatctcaaaatgttatggagaagtgatccatctccctacaaaagaccagaaccaaagcctcagccttttgctcgagcttcacctttgactttgcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="64850" stop="67370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65150" g_stop="65373" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65374" i_stop="66002" i_length="629">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66003" g_stop="66137" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="359" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66138" i_stop="66307" i_length="170">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66308" g_stop="66487" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="539" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66488" i_stop="66727" i_length="240">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66728" g_stop="66789" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="601" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66790" i_stop="66910" i_length="121">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66911" g_stop="67068" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="757" r_length="156" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E212647" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65150" e_stop="65373"/>
          <exon e_start="66003" e_stop="66137"/>
          <exon e_start="66308" e_stop="66487"/>
          <exon e_start="66728" e_stop="66789"/>
          <exon e_start="66911" e_stop="67068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCATTAGCCAACCGTTCGCTTGTTCTCATTCTACATTGGTCCGAAGGATCCGACCCGGTAGGAAACCGGGTGAAGATTGTACCTGATCTCTCTCCGATCGAGGCTGAGTATATATCTGCGATCGAGTGGTTAGTGTTTGATGATATCAAAGTTCTAGCTTTGGGCACTTCTCGTGGGTATTTGTTGATTTATTCTCTCCGTGGTGATCTGATTCATAAACAGGTATTCGTATTTTCAGTTCATAGTTAGCAAATGCAGTGGAGTTAGTAAATGTAGTTGTTAATTTGATTGTTATGTGAAGAAGCTATTTAAAGGGGAAAGATTGGATTTAGGCAAGCTAGGTAATTGTAGGAATTGATGAAGCTGTGGAATTTACATTCAGAAAGAATTTTAGCGAAGTTGCATTGCGCTTGGATTATATTAGACATTATTATTTGTCACTGGATCACGCTACTGTTAGTTTTGCTATTTAAAAGTTTTATGCTTTCTCATTTGTCATTTATGATAAATTTGTCGTTGAGGTGAGGTTATATCGGGAACAACCTCTTTACCTTCCACACCCCAATTGTGTAAGATTGTCCTACCTGCTACCCTTTCTAGACTCCACTTGTAGGATTGCATCGGATATGTTGTTGTTTGTTTTTAGTGTTATTCTCAAAGAAAACAAAAGAGTTTGTTGATGATGGTCATTATGTACTTTTTCTTTTAGTTTAACATCTTAACTGATTATGCAATGTAGTAAAACTAGATATTTTGGAACCTATAAGCGTTTGGTTTAAGATTGTTTTTTTTGTTTTATTTAGTGGTGCCATATGATGATTAGCAAACTTACCAGAACTTTTGTGTGGCAGATAGTAAGCCCTGGAAAGATTCTTAGATTGAGAGTCCGTGATACCAAGAGAGATCTAACCCAAGATGCATCATCAGAAGAGGTCTGTGTTGTTATGTCAGGTGTTATTGCTCGGTTTGATGGATCAGATATTCAGGTATTGGAATTTTCTCGTAGTTACAATTAATGTTATTTTTTTTTCTAAATCAACTATGATACGAGGACATTTAATTTTCAATTTTTACATCTCCATTTTGATGTCGAACCATGAAGTTTAGGTTCTCATATGTCATACTGCTAAATGCTAATGTCCGTATTAAAATGCAGAATATGCTTCAGAGGTGGTTTAGAGAAAGACACTCTCAGTTCTGGGATGAGACAGAATCTGAAAATTCTGCAGATACTTTTGGGAGGCTTCCATACCAGCTATGGAATGTTAATAAATATGGTTCTTGTGTTGATGCTGCTATCACTGGTCTGATGCCCCCTCCTCTGCTGGAGCTACAGGTAATATTTTATTTTCTCATTCTATCATGTTGCAGTACTTTCTTCTCTTACTTTTAAACAAGGCATACTTTTCTACTGGGATTTGTTGTTTCCTCAACCCTAAACCTTCTCCTACAGTTCTGCACACACCAAAAAGAATTTTTAGTGCTCTTATGAAATGCTATTTTTTGTCCTATGACTTCCGGAAATTTTCTGAAGTTATTCTGGTATTTGAATTCAGCTGCTTTTATTGTTGGGCAGTCAAGTCAGCGTTATTATTGTGCAATCACTGTTGGAGCTGACGCTGTGATTTCTGCTTATCGGTTAGTCTGCAGTATATTATACTATGATTCTTTTTTCAAGTATTTTTTAACTAAAGTCTCCGTCTGCACTCCCATTTCTTACTTTGTTTTACTAAATTGGATTTCTCTTTACACTTTCAAGACTTTCTGTAGACCGAAGCAGATCAATAGTAGGGGCTATTCTCTCCAAGGTTGTGCCTGCGACTTTTTCAACAATAACTTCAATCTCAAAAATGTTATGGAGAAGTGATCCATCTCCTACAAAAAGACCAGAACCAAAGCCTCAGCCTTTTGCTCGAG</genome_strand>
        <mrna_strand>TTGCATTAGCCAACCGTTCGCTTGTTCTCATTCTACATTGGTCCGAAGGATCCGACCCGGTAGGAAACCGGGTGAAGATTGTACCTGATCTCTCTCCGATCGAGGCTGAGTATATATCTGCGATCGAGTGGTTAGTGTTTGATGATATCAAAGTTCTAGCTTTGGGCACTTCTCGTGGGTATTTGTTGATTTATTCTCTCCGTGGTGATCTGATTCATAAACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTAAGCCCTGGAAAGATTCTTAGATTGAGAGTCCGTGATACCAAGAGAGATCTAACCCAAGATGCATCATCAGAAGAGGTCTGTGTTGTTATGTCAGGTGTTATTGCTCGGTTTGATGGATCAGATATTCAG..........................................................................................................................................................................AATATGCTTCAGAGGTGGTTTAGAGAAAGACACTCTCAGTTCTGGGATGAGACAGAATCTGAAAATTCTGCAGATACTTTTGGGAGGCTTCCATACCAGCTATGGAATGTTAATAAATATGGTTCTTGTGTTGATGCTGCTATCACTGGTCTGATGCCCCCTCCTCTGCTGGAGCTACAG................................................................................................................................................................................................................................................TCAAGTCAGCGTTATTATTGTGCAATCACTGTTGGAGCTGACGCTGTGATTTCTGCTTATCG.........................................................................................................................ACTTTCTGTAGACCGAAGCAGATCAATAGTAGGGGCTATTCTCTCCAAGGTTGTGCCTGCGACTTTTTCAAC-ATAACTTNCATCTC-AAAATGTTATGGAGAAGTGATCCATCTCCCTACAAAAGACCAGAACCAAAGCCTCAGCCTTTTGCTCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E246172" ref_strand="+" ref_description="SGN-E246172 [cLEF-40-J23]">
      <seq>tctccttcacactctaatttacagtttcaaaaaaaaaaaaaaaaaaaaaaattcatcaaaatgtcacttcgtcgttcatttctctctcgaagaatcatcagtcgatcttttacattttccaaatcattcaaagaattcaaacttccagaaccttctactagagatgatttcgctgttggagatgaacaaaacggcgccgccggtgaatcggattccggcgatgcaacgtcgtcgtggtcgaatatgttgccggagctgttgagagagattatacagagagtggaagctacggaggacagttggcctctacgtcaaaacgtcgtcgcttgtggatgtgtgtgtaagagatggaggcaagttactgaggatgtagttgagtcgtctcttcaggctgggaaaattacttttccgtcttgccttaaacagccagggcctcgggaccctcctcttcaatgtttcatcaagcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="69603" stop="71407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69903" g_stop="70328" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70329" i_stop="71064" i_length="736">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71065" g_stop="71107" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="469" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E246172" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69903" e_stop="70328"/>
          <exon e_start="71065" e_stop="71107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTTCACACTCTAATTTACAGTTTCAAAAAAAAAAAAAAAAAAAAAAATTCATCAAAATGTCACTTCGTCGTTCATTTCTCTCTCGAAGAATCATCAGTCGATCTTTTACATTTTCCAAATCATTCAAAGAATTCAAACTTCCAGAACCTTCTACTAGAGATGATTTCGCTGTTGGAGATGAACAAAACGGCGCCGCCGGTGAATCGGATTCCGGCGATGCAACGTCGTCGTGGTCGAATATGTTGCCGGAGCTGTTGAGAGAGATTATACAGAGAGTGGAAGCTACGGAGGACAGTTGGCCTCTACGTCAAAACGTCGTCGCTTGTGGATGTGTGTGTAAGAGATGGAGGCAAGTTACTGAGGATGTAGTTGAGTCGTCTCTTCAGGCTGGGAAAATTACTTTTCCGTCTTGCCTTAAACAGGTGCAAATTACTTTAGCTTTTTTTTTATGACCTCAATTTTTGTTAATTGTTTTTTTTTTCTGTGATTGTAATTTAGGTCGTTTGAGGTTTGATTCCGTAAAATTTGTGTGTAGTTGTGTTGTTCTCATTGTTGCATAAGCTTAATTGTTGTGGTGTTGTGATAAGTGAAACACTGAAGAAAGGAAAAGAAGGGAAGTTCTGGAGTTGGTAATTTTGTGTGGGAGTGGAAATGTGAAATAGGGCTGATTATAGAGAGGAATAGAAATAGAGGATTTGTATAACTGTTCAGACTATTTTTGGATCAAGGCGTAGTTGATCGATTGTAGTTTTGTAGTTTAGTGAACTTGTTGTTTTTGAGCTGGGAGTACAATGGGATTTCCTTTCTGAGCTTGCGGATTGTCACGGTTGTATACGCGTTAGGGTAGATTAACTTCTTCCATTTTGAATTTGATCAGCTCTAACAACAATGAGTTCCCTGTATGTGGTAAAGGTGCAGCACCGTTGCTAGTTCAAGTAGATAAGCAAGCCGATGGAAGAAAAAAAAGGAAATATTTTTATTGATCTTTTCGAATACTGGGTTGATATTAGTGATAATTCAGCTGAAAGAAATACTGTAGCCTGATTATCTGTATAATGTAGGTAATTAGGAGTTCAGTTTACTTCATTTTTGTATTTTTATCTATAATGTTTAATGCAGCTGTTAATGATGCCTTCTTTCTCCAATTTTCTTCTGCAGCCAGGGCCTCGGGACCCTCCTCTTCAATGTTTCATCAAGCGTG</genome_strand>
        <mrna_strand>TCTCCTTCACACTCTAATTTACAGTTTCAAAAAAAAAAAAAAAAAAAAAAATTCATCAAAATGTCACTTCGTCGTTCATTTCTCTCTCGAAGAATCATCAGTCGATCTTTTACATTTTCCAAATCATTCAAAGAATTCAAACTTCCAGAACCTTCTACTAGAGATGATTTCGCTGTTGGAGATGAACAAAACGGCGCCGCCGGTGAATCGGATTCCGGCGATGCAACGTCGTCGTGGTCGAATATGTTGCCGGAGCTGTTGAGAGAGATTATACAGAGAGTGGAAGCTACGGAGGACAGTTGGCCTCTACGTCAAAACGTCGTCGCTTGTGGATGTGTGTGTAAGAGATGGAGGCAAGTTACTGAGGATGTAGTTGAGTCGTCTCTTCAGGCTGGGAAAATTACTTTTCCGTCTTGCCTTAAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGGCCTCGGGACCCTCCTCTTCAATGTTTCATCAAGCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E369201" ref_strand="+" ref_description="SGN-E369201 [TUS-23-K22]">
      <seq>tctccttcacactctaatttacagtttcaaaaaaaaaaaaaaaaaaaaaaattcatcaaaatgtcacttcgtcgttcatttctctctcgaagaatcatcagtcgatcttttacattttccaaatcattcaaagaattcaaacttccagaaccttctactagagatgatttcgctgttggagatgaacaaaacggcgccgccggtgaatcggattccggcgatgcaacgtcgtcgtggtcaaatatgttgccggagctgttgagagagattatacagagagtggaagctacggaggacagttggcctctacgtcaaaacgtcgtcgcttgtggatgtgtgtgtaagagatggaggcaagttactgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="69603" stop="70568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69903" g_stop="70268" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E369201" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69903" e_stop="70268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTTCACACTCTAATTTACAGTTTCAAAAAAAAAAAAAAAAAAAAAAATTCATCAAAATGTCACTTCGTCGTTCATTTCTCTCTCGAAGAATCATCAGTCGATCTTTTACATTTTCCAAATCATTCAAAGAATTCAAACTTCCAGAACCTTCTACTAGAGATGATTTCGCTGTTGGAGATGAACAAAACGGCGCCGCCGGTGAATCGGATTCCGGCGATGCAACGTCGTCGTGGTCGAATATGTTGCCGGAGCTGTTGAGAGAGATTATACAGAGAGTGGAAGCTACGGAGGACAGTTGGCCTCTACGTCAAAACGTCGTCGCTTGTGGATGTGTGTGTAAGAGATGGAGGCAAGTTACTGAG</genome_strand>
        <mrna_strand>TCTCCTTCACACTCTAATTTACAGTTTCAAAAAAAAAAAAAAAAAAAAAAATTCATCAAAATGTCACTTCGTCGTTCATTTCTCTCTCGAAGAATCATCAGTCGATCTTTTACATTTTCCAAATCATTCAAAGAATTCAAACTTCCAGAACCTTCTACTAGAGATGATTTCGCTGTTGGAGATGAACAAAACGGCGCCGCCGGTGAATCGGATTCCGGCGATGCAACGTCGTCGTGGTCAAATATGTTGCCGGAGCTGTTGAGAGAGATTATACAGAGAGTGGAAGCTACGGAGGACAGTTGGCCTCTACGTCAAAACGTCGTCGCTTGTGGATGTGTGTGTAAGAGATGGAGGCAAGTTACTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E436720" ref_strand="+" ref_description="SGN-E436720 [STM-63-M18]">
      <seq>caaacaaaaaaaaaagagaaaaaaaatttcatcaacatgtcacttcgtcgttcatttctctcacgaagaatcatcagtcgatcttttacattttccaaatcattcaaagaattcaaacttccagaaccttctaccagagatgatttcgctgttggagatgaccgaaacggcgccgccggtgaatcagattccggcgatgcaacgtcgtcgtggtcgaatatgttgccggagctgttgagagagattatacagcgagtggaagcttcggaggacagttggcctctacgtcaaaacgtcgtcgcttgtggatgtgtgtgtaagagatggaggcaagttactgaggatgtagttgagtcgtctcttcaggctgggaaaattactttcccgtcttgccttaaacagccagggcctcgggaccctcctcttcaatgtttcatcaaacgtgacaagaagaacgcaaccttttacctatatctcgctctttcaccctcgttaatggaccaggggaagttcctcttagcagcccggaggtacagaagtggtgctcacattgaatatataatatctcttgatgcagatgatttgtctcagagaagtaaggcgtatgttgggaagttaagatcggactttcttggaccaattttaccatatatgatagtcaacccccacacaatggggcaaggccatcaagcagccggtcttgtcgacgttttgcaagtaagcaaattagtccccattaccagctgggtattttgaaagtgggaatggtttctacaagttaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="69630" stop="74397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69927" g_stop="70328" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70329" i_stop="71064" i_length="736">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71065" g_stop="71152" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="490" r_length="88" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71153" i_stop="71892" i_length="740">
            <donor d_prob="0.911" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71893" g_stop="72022" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="620" r_length="130" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72023" i_stop="73931" i_length="1909">
            <donor d_prob="0.939" d_score="0.94"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73932" g_stop="74097" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="784" r_length="164" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E436720" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E436720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69927" e_stop="70328"/>
          <exon e_start="71065" e_stop="71152"/>
          <exon e_start="71893" e_stop="72022"/>
          <exon e_start="73932" e_stop="74097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAAAAAAAAAAAAAAAAAAAAAATTCATCAAAATGTCACTTCGTCGTTCATTTCTCTCTCGAAGAATCATCAGTCGATCTTTTACATTTTCCAAATCATTCAAAGAATTCAAACTTCCAGAACCTTCTACTAGAGATGATTTCGCTGTTGGAGATGAACAAAACGGCGCCGCCGGTGAATCGGATTCCGGCGATGCAACGTCGTCGTGGTCGAATATGTTGCCGGAGCTGTTGAGAGAGATTATACAGAGAGTGGAAGCTACGGAGGACAGTTGGCCTCTACGTCAAAACGTCGTCGCTTGTGGATGTGTGTGTAAGAGATGGAGGCAAGTTACTGAGGATGTAGTTGAGTCGTCTCTTCAGGCTGGGAAAATTACTTTTCCGTCTTGCCTTAAACAGGTGCAAATTACTTTAGCTTTTTTTTTATGACCTCAATTTTTGTTAATTGTTTTTTTTTTCTGTGATTGTAATTTAGGTCGTTTGAGGTTTGATTCCGTAAAATTTGTGTGTAGTTGTGTTGTTCTCATTGTTGCATAAGCTTAATTGTTGTGGTGTTGTGATAAGTGAAACACTGAAGAAAGGAAAAGAAGGGAAGTTCTGGAGTTGGTAATTTTGTGTGGGAGTGGAAATGTGAAATAGGGCTGATTATAGAGAGGAATAGAAATAGAGGATTTGTATAACTGTTCAGACTATTTTTGGATCAAGGCGTAGTTGATCGATTGTAGTTTTGTAGTTTAGTGAACTTGTTGTTTTTGAGCTGGGAGTACAATGGGATTTCCTTTCTGAGCTTGCGGATTGTCACGGTTGTATACGCGTTAGGGTAGATTAACTTCTTCCATTTTGAATTTGATCAGCTCTAACAACAATGAGTTCCCTGTATGTGGTAAAGGTGCAGCACCGTTGCTAGTTCAAGTAGATAAGCAAGCCGATGGAAGAAAAAAAAGGAAATATTTTTATTGATCTTTTCGAATACTGGGTTGATATTAGTGATAATTCAGCTGAAAGAAATACTGTAGCCTGATTATCTGTATAATGTAGGTAATTAGGAGTTCAGTTTACTTCATTTTTGTATTTTTATCTATAATGTTTAATGCAGCTGTTAATGATGCCTTCTTTCTCCAATTTTCTTCTGCAGCCAGGGCCTCGGGACCCTCCTCTTCAATGTTTCATCAAGCGTGACAAGAAGAACGCGACCTTTTACCTATATCTTGCACTTTCACCCTGTGAGTTGTTACTTTGACAAATATTATTTTCAGGAATTTAGCCTTGGGAAATTAGCTACTAGCTGCAGTAATTGATGTTTGACTTCATGAAAATCTGGTTGGGACTGTACTTTAGGTGGTTGCTTAGCAAACTGAATTGCATATGCTTTAAATTGCCTTTGAATCTTTCTGGGTCAATGACTTGGTCAGTATGTTTTGTTTAGACTTTATATCAGCATTGACTATTCAACTAAACACTCATTGACTTATCAATGGAAGTCTCAATCGTCTATTGTCTACATGTTCGCACCTATCTTTATCGTGCTCCCATCTTTCTTTCAACAAGATTTGAAATCTTCTATAATCAGTTTTAATATCTTAATTACTTTAAGATAGAATAGTCTAAAACACTTGAAAGTTTGTCTGTACTTTCTTAACAATTTACAAAGTCTAAAGGCATGCACAGTTTTATTATCTTTTTTTTTGAGCATGACGTGAAAAATCATTCATGATTATTTATTTTAATTTCACATTTTATCTGGGCTCCTCGTAATAAAAGACTGTTGTATTCTATTTTTCATTCCTATATCACGAAAGCTATTAGCTTGATGGATGGTTTGAGTCTGATACTCCAATTGCTAATACAGATACTGTTTCAAAGATGTGTAGACTCATCAGTCAATAGTCATTATATGTTGCTCCTAGTTGTTAGAAATTTCTATATTATTTTTTAACGATTTCTTGGTATTTATATTTGGCAGCATTAATGGACCAGGGGAAGTTCCTCTTAGCAGCCCGGAGGTACAGAAATGGTGCTCACATTGAATATATAATATCTCTCGACGCAGATGATTTGTCACAGAGAAGTAAGGCATATGTTGGGAAGTTAAGGTATAAATTAGTTGCCCCTTAAAATTAAGACTGATGAAGGCCATTTCTTTGTTGTTATATGTGTTCAAAGTTGTCAGGCAAAAAGAGTCTGAAGGGCTAAAGCTAGGCTGTATCCTAAAAAGTCCTAATAACCAGAAAATCAAAATTCTCACTTCTCACTAACACGTCTAGTTTCATATATGTAGCTTGACGACTAGATGCCGATGTTGACTTTAGGAAAAATGATGTTTATAGAAAAATATAGAATGACATGGCTAGAACTGATAGAGTGCAAGTGTATTATACTCATTATATTTCTTCTTTGAGATTGACATAACCTAAGTTCGAAGAAAAGATTCCGTGGATATATTATATATATTTGTTGTGGTATAAAGTAACATGCACATACTTATTGTGAACACAAGGTATTTCAACCTTATGTTGCTTCTTCTTGCTGCATGTTTGGTTGATCCTGTAGAAGTTCAAAAGGTTCTAACTTCCAGTTCGTGATTCACAAGAGAATGAGAAGAATACAGGAATACCAAACCTTACCAATACATATGATATCAGATAAAAAAAATTAAAATCTAGATGGGCAATAAGAGTTACTAGTATAGTGTCAAATGTGTCTTCCTTCTAGCTGTATCAGATACAAAACTTCTTTTGTTGGGAGATATTCAGTTTCACACATTAGAAGCCAAATTGTGAGGCGACATGTTGCTACAAAGCAGAATGGGTTGAGCAGGAGGCTGCTTAGTGATCTAGAATGCTAAGAGAAGAGGGTGCATCACGACTTAATTGTGGTTTTGAGGTGGGACGAGAATATTTGTCACTTGTGAGGCATTCCAAATAGTCTTGCTGATTATACCTTTAGATTTTTTTATTTGCATACCTTTTTGGTGTCCCTCATGCAATTTCTCTATTAATATCTTGCTAGAAAGAAGAATCCTGGCATGGTGAAATTCAACTCTTAGGGATAAAAATTCTGGCTATATTCTTAAGCTATAATCTATGTGATAGTCCACCTAATTTCACAGATCTTGTTACTTTTTTTCCCCAGCTAACTGAACTGTTTTTAGGCTGGCAACTGCTGATAATACCGTTGACAAAATTCTGTCAGTTTTCTTACTTTAAAAAGATAACTTTGGTGCTATTTCTTCCTCTCTTTCTTTCCAAATGTTACGTCAAGATATCTAAGTCTTGGAACATAAATTGTTTGGTATCTAGACGTTTACCCGTCTTTGCTGCCATGCAACACTAATCTTGATACAATGAATTAACGTGCAATTGTACGCTTCTGATCATGCAGATAAGGTAAACTTCAATGTTATCTGCTAGTTAGTTTTTCATCAAACAATTACATAAATTGAAATATGAGACATCAATACGGAAGGAAATCTACACATCTTATTTGGAACTGTACTAAGGAAGGAAATGTACACTTTCCTTTTATGGATGGTCATTATGGAATCTGTTCAACCTCCGGTATAAAAAAAATGATGATGCTGGCAGCTGGAAGTGCATAGCTGTATTGCCCCCCTTAACAAAAGTGTGATAGTACTCTTTCCATTTAGTGGCCCATAGAAGGTTCTTAAAGATAGCCCCATTAATGTTGTATCTTTGTTGTTAAGGTTTCTGTCCTTGAGAGGAAGTTAGAAATTTGAATGCTTTACTTAGACTTTTTTGTTGTTTCTTTTACTCTCCTCTCCTGACCAGATTCTCCGTTTGAGTCTTGTGTTCAATGTCGTTAGCAGGAGAAACAAACATCTAAATACATTACTAGAAACAATATCCTACCCTAATACCTGTGTTTCCATGCAATTATGATAGATACAACTCTTAGAGTAAGGGGAGAAGAAAAGATGTGTTCTGATTTCATTTTTGTTTTTTCCTTCATGTTCTAACCTTCCCACTGAATCCAACTTGACAGATCGGACTTTCTTGGAACCAATTTTACCATATATGATAGTCAAGCCCCACACAATGGGGCAAGGCCATCAAGCAGCCGGTCTTGTCGACGTTTTGCAAGTAAGCAAATTAGTCCCCAATTACCAGCTGGTAATTTTG-AAGTGGGAAGTGTTTCCTACAAGTTAAAC</genome_strand>
        <mrna_strand>CAAACAAAAAAAAAAGAGAAAAAAAATTTCATCAACATGTCACTTCGTCGTTCATTTCTCTCACGAAGAATCATCAGTCGATCTTTTACATTTTCCAAATCATTCAAAGAATTCAAACTTCCAGAACCTTCTACCAGAGATGATTTCGCTGTTGGAGATGACCGAAACGGCGCCGCCGGTGAATCAGATTCCGGCGATGCAACGTCGTCGTGGTCGAATATGTTGCCGGAGCTGTTGAGAGAGATTATACAGCGAGTGGAAGCTTCGGAGGACAGTTGGCCTCTACGTCAAAACGTCGTCGCTTGTGGATGTGTGTGTAAGAGATGGAGGCAAGTTACTGAGGATGTAGTTGAGTCGTCTCTTCAGGCTGGGAAAATTACTTTCCCGTCTTGCCTTAAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGGCCTCGGGACCCTCCTCTTCAATGTTTCATCAAACGTGACAAGAAGAACGCAACCTTTTACCTATATCTCGCTCTTTCACCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTAATGGACCAGGGGAAGTTCCTCTTAGCAGCCCGGAGGTACAGAAGTGGTGCTCACATTGAATATATAATATCTCTTGATGCAGATGATTTGTCTCAGAGAAGTAAGGCGTATGTTGGGAAGTTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGGACTTTCTTGG-ACCAATTTTACCATATATGATAGTCAACCCCCACACAATGGGGCAAGGCCATCAAGCAGCCGGTCTTGTCGACGTTTTGCAAGTAAGCAAATTAGTCCCC-ATTACCAGCTGGGTATTTTGAAAGTGGGAA-TGGTTTCTACAAGTTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E336590" ref_strand="+" ref_description="SGN-E336590 [cTOE-4-I8]">
      <seq>cgatcttttacattttccaaatcattcaaagaattcaaacttccagaaccttctactagagatgatttcgctgttggagatgaacaaaacggcgccgccggtgaatcggattnccggatgcaacgtcgtcgtggtcgaatatgttgccggagctgttgagagagattatacagagagtggaagctacggaggacagttggcctctacgtcaaaacgtcgtcgcttgtggatgtgtgtgtaagagatggagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="69705" stop="70556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70005" g_stop="70256" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E336590" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>252</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70005" e_stop="70256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATCTTTTACATTTTCCAAATCATTCAAAGAATTCAAACTTCCAGAACCTTCTACTAGAGATGATTTCGCTGTTGGAGATGAACAAAACGGCGCCGCCGGTGAATCGGATTCCGGCGATGCAACGTCGTCGTGGTCGAATATGTTGCCGGAGCTGTTGAGAGAGATTATACAGAGAGTGGAAGCTACGGAGGACAGTTGGCCTCTACGTCAAAACGTCGTCGCTTGTGGATGTGTGTGTAAGAGATGGAGG</genome_strand>
        <mrna_strand>CGATCTTTTACATTTTCCAAATCATTCAAAGAATTCAAACTTCCAGAACCTTCTACTAGAGATGATTTCGCTGTTGGAGATGAACAAAACGGCGCCGCCGGTGAATCGGATTNCCG-GATGCAACGTCGTCGTGGTCGAATATGTTGCCGGAGCTGTTGAGAGAGATTATACAGAGAGTGGAAGCTACGGAGGACAGTTGGCCTCTACGTCAAAACGTCGTCGCTTGTGGATGTGTGTGTAAGAGATGGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E203479" ref_strand="+" ref_description="SGN-E203479 [cLEC-15-J19]">
      <seq>cttgctgattatacctttagatttttttatttgcatacctttttggtgtccctcatgcaatttctctattaatatcttgctagaaagaagaatcctggcatggtgaaattcaactcttagggataaaaattctggctatattcttaagctataatctatgtgatagtccacctaatttcacagatcttgttactttttttccccagctaactgaactgtttttaggctggcaactgctgataataccgttgacaaaattctgtcagttttcttactttaaaaagataactttggtgctatttcttcctctctttctttccaaatgttacgtcaagatatctaagtcttggaacataaattgtttggtatctagacgtttacccgtctttgctgccatgcaacactaatcttgatacaatgaattaacgtgcaattgtacgcttctgatcatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="72556" stop="73608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72856" g_stop="73308" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E203479" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72856" e_stop="73308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTGATTATACCTTTAGATTTTTTTATTTGCATACCTTTTTGGTGTCCCTCATGCAATTTCTCTATTAATATCTTGCTAGAAAGAAGAATCCTGGCATGGTGAAATTCAACTCTTAGGGATAAAAATTCTGGCTATATTCTTAAGCTATAATCTATGTGATAGTCCACCTAATTTCACAGATCTTGTTACTTTTTTTCCCCAGCTAACTGAACTGTTTTTAGGCTGGCAACTGCTGATAATACCGTTGACAAAATTCTGTCAGTTTTCTTACTTTAAAAAGATAACTTTGGTGCTATTTCTTCCTCTCTTTCTTTCCAAATGTTACGTCAAGATATCTAAGTCTTGGAACATAAATTGTTTGGTATCTAGACGTTTACCCGTCTTTGCTGCCATGCAACACTAATCTTGATACAATGAATTAACGTGCAATTGTACGCTTCTGATCATGC</genome_strand>
        <mrna_strand>CTTGCTGATTATACCTTTAGATTTTTTTATTTGCATACCTTTTTGGTGTCCCTCATGCAATTTCTCTATTAATATCTTGCTAGAAAGAAGAATCCTGGCATGGTGAAATTCAACTCTTAGGGATAAAAATTCTGGCTATATTCTTAAGCTATAATCTATGTGATAGTCCACCTAATTTCACAGATCTTGTTACTTTTTTTCCCCAGCTAACTGAACTGTTTTTAGGCTGGCAACTGCTGATAATACCGTTGACAAAATTCTGTCAGTTTTCTTACTTTAAAAAGATAACTTTGGTGCTATTTCTTCCTCTCTTTCTTTCCAAATGTTACGTCAAGATATCTAAGTCTTGGAACATAAATTGTTTGGTATCTAGACGTTTACCCGTCTTTGCTGCCATGCAACACTAATCTTGATACAATGAATTAACGTGCAATTGTACGCTTCTGATCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E426467" ref_strand="+" ref_description="SGN-E426467 [STM-46-J11]">
      <seq>caatctttttttagagaatactagattaaatattagtgtcattgtgcacccaaagaaaaagaagacgaaagcaaactaggaagcatattacaagttattaagaatctattcacaggccaattttgtaccaaaactggtcaggcaaattgcaaacgcttggaaagcagacaacggtttcctgtagtccattgtaaaaacatcatctcctactttcccaaactggaggataactgtatcttcgtcgccttttccatcaggttggctttggtccatcgttgcaactagctgaaagtttttcacagatgcaacggtgacccttccgtggaaatttaaacaccaacattgcaaatgctcatgccatcgtggagctttgtttttcagaactgtagagttggcttctgcggaaccaggttgcttcttcttcggagcatcctgagatttgtcaataacagcttctccaggacaggggcacttgagtgagcatatcatcctccttggtcctctagacttcaacaggtttaacttgtaagaaacatttcccacttcaaaattaccagctggtaattggggactaatttgcttacttgcaaaacgtcgacaagaccggctgcttgatggccttgccccattgtgtgggggttgactatcatatatggtaaaattggttccaagaaagtccgatctgtcagttggattcaataggaaggttagaaaatgaaggaacnaaacagaatgaaaataagaacacttcttttcttctccccttacttggnaagatacttatctatcataatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="74903" stop="73545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74603" g_stop="73821" g_length="783"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="795" r_length="784" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E426467" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74603" e_stop="73821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGAATACTAGATTAAACA--AGTGTCACTGTGCACCCGAAGAAAACGAAAAAACGAAAAGCAAACTAGGAAGTATATTACAAGTTCTAAAGAATCTATTCACAGGCCAATTTAGTGCCAAAACTGGTCAGGCAAATTGCAAACGCTTGGAAAGCAGACAAAGGCTTCCTGTAGTCCATTGTAAAAACATCATCTCCTACTTTTCCAAACTGGAGGATAACTGTATCCTCGTCACCTTTTCCATCAGGTTGGCTTTGGTCCATCGTTGCCACTAGCTGAAAGTTTTTCACAGATGCAACGGTGACCCTTCCATGGAAATTTAAACACCAACATTGCAAATGCTCATGCCATCTTGGAGCTTTGTTTTTCAGAACTGTAGAGTTGGCTTCTGCGGAACCAACCAGCTTCTTCTTCAGAGCATCCTGAGATTTGTCCGAGGCAGCTTCTCCAGGACAGGGGCAATTGAGCGAACAAATCATCCTCCTTGGTCCTCTTGACTTCAGCAGGTTTAACTTGTAGGAAACACTTCCCACTTCAAAATTACCAGCTGGTAATTGGGGACTAATTTGCTTACTTGCAAAACGTCGACAAGACCGGCTGCTTGATGGCCTTGCCCCATTGTGTGGGGCTTGACTATCATATATGGTAAAATTGGTTCCAAGAAAGTCCGATCTGTCAAGTTGGATTCAGTGGGAAGGTTAGAACATGAAGGAA-AAAACAAAAATGAAATCAGAACACATCTTTTCTTCTCCCCTTAC-T-CTAAGAGTTGTATCTATCATAATT</genome_strand>
        <mrna_strand>TAGAGAATACTAGATTAAATATTAGTGTCATTGTGCACCCAAAGAAAA--AGAAGACGAA-AGCAAACTAGGAAGCATATTACAAGTTATTAAGAATCTATTCACAGGCCAATTTTGTACCAAAACTGGTCAGGCAAATTGCAAACGCTTGGAAAGCAGACAACGGTTTCCTGTAGTCCATTGTAAAAACATCATCTCCTACTTTCCCAAACTGGAGGATAACTGTATCTTCGTCGCCTTTTCCATCAGGTTGGCTTTGGTCCATCGTTGCAACTAGCTGAAAGTTTTTCACAGATGCAACGGTGACCCTTCCGTGGAAATTTAAACACCAACATTGCAAATGCTCATGCCATCGTGGAGCTTTGTTTTTCAGAACTGTAGAGTTGGCTTCTGCGGAACCAGGTTGCTTCTTCTTCGGAGCATCCTGAGATTTGTCAATAACAGCTTCTCCAGGACAGGGGCACTTGAGTGAGCATATCATCCTCCTTGGTCCTCTAGACTTCAACAGGTTTAACTTGTAAGAAACATTTCCCACTTCAAAATTACCAGCTGGTAATTGGGGACTAATTTGCTTACTTGCAAAACGTCGACAAGACCGGCTGCTTGATGGCCTTGCCCCATTGTGTGGGGGTTGACTATCATATATGGTAAAATTGGTTCCAAGAAAGTCCGATCTGTC-AGTTGGATTCAATAGGAAGGTTAGAAAATGAAGGAACNAAACAGAATGAAAATAAGAACACTTCTTTTCTTCTCCCCTTACTTGGNAAGATACTTATCTATCATAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E436721" ref_strand="-" ref_description="SGN-E436721 [STM-63-M18]">
      <seq>caagtaagcaaattagtccccaattaccagctggtaatttgnaagtgggaaatgtttcntacaagttaaacctgttgaagtctagaggaccaaggagaatgatatgttcactcaagtgcccctgtcctggagaagctgttatggacaaatctcaggatgctccaaagaagaagcagcctggttccgcagaagccaactctacagttctgaaaaacaaagctccacgatggcatgagcatttgcaatgttggtgtttaaatttccacggaagggtcaccgttgcatctgtgaaaaactttcagctagttgcaacgatggaccaaagccaacctgatggaaaaggtgacgaagatacagttatcctccagtttgggaaagtaggagatgatgtttttacaatggactataggaagccgttgtctgctttccaagcgtttgcaatttgcctgaccagttttggtacaaaattggcctgtgaatagattcttattaacttgtaatatgcttcctagtttgctttcgtcttctttttctttaggtgcacaatgacacttttatttaatctagtattctctactcgtgctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="73727" stop="74912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74027" g_stop="74623" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E436721" ref_strand="-">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E436721" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="74027" e_stop="74623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTAAGCAAATTAGTCCCCAATTACCAGCTGGTAATTTTGAAGTGGGAAGTGTTTCCTACAAGTTAAACCTGCTGAAGTCAAGAGGACCAAGGAGGATGATTTGTTCGCTCAATTGCCCCTGTCCTGGAGAAGCTGCCTCGGACAAATCTCAGGATGCTCTGAAGAAGAAGCTGGTTGGTTCCGCAGAAGCCAACTCTACAGTTCTGAAAAACAAAGCTCCAAGATGGCATGAGCATTTGCAATGTTGGTGTTTAAATTTCCATGGAAGGGTCACCGTTGCATCTGTGAAAAACTTTCAGCTAGTGGCAACGATGGACCAAAGCCAACCTGATGGAAAAGGTGACGAGGATACAGTTATCCTCCAGTTTGGAAAAGTAGGAGATGATGTTTTTACAATGGACTACAGGAAGCCTTTGTCTGCTTTCCAAGCGTTTGCAATTTGCCTGACCAGTTTTGGCACTAAATTGGCCTGTGAATAGATTCTTTAGAACTTGTAATATACTTCCTAGTTTGCTTTTCGTTTTTTCGTTTTCTTCGGGTGCACAGTGACAC--TTGTTTAATCTAGTATTCTCTACTCGTGCTATTTAGTAAATG</genome_strand>
        <mrna_strand>CAAGTAAGCAAATTAGTCCCCAATTACCAGCTGGTAATTTGNAAGTGGGAAATGTTTCNTACAAGTTAAACCTGTTGAAGTCTAGAGGACCAAGGAGAATGATATGTTCACTCAAGTGCCCCTGTCCTGGAGAAGCTGTTATGGACAAATCTCAGGATGCTCCAAAGAAGAAGCAGCCTGGTTCCGCAGAAGCCAACTCTACAGTTCTGAAAAACAAAGCTCCACGATGGCATGAGCATTTGCAATGTTGGTGTTTAAATTTCCACGGAAGGGTCACCGTTGCATCTGTGAAAAACTTTCAGCTAGTTGCAACGATGGACCAAAGCCAACCTGATGGAAAAGGTGACGAAGATACAGTTATCCTCCAGTTTGGGAAAGTAGGAGATGATGTTTTTACAATGGACTATAGGAAGCCGTTGTCTGCTTTCCAAGCGTTTGCAATTTGCCTGACCAGTTTTGGTACAAAATTGGCCTGTGAATAGATTCTTATTAACTTGTAATATGCTTCCTAGTTTGC-TTTCG--TCTTCTTTTTCTTTAGGTGCACAATGACACTTTTATTTAATCTAGTATTCTCTACTCGTGCTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E369200" ref_strand="+" ref_description="SGN-E369200 [TUS-23-K22]">
      <seq>tttttttttacagaaaactccgctatttgttacattgatgttgaaattctaataaaggttaaattacacttggtcccaacatctgctacatttactaaatagcacgagtagagaatacgtagattaaacaagtgtcactgtgcacccgaagaaaacgaaaaaacgaaaagcaaactaggaagtatattacaagttctaaagaatctattcacaggccaatttagtgccaaaactggtcaggcaaattgcaaacgcttggaaagcagacaaaggcttcctgtagtccattgtaaaaacatcatctcctacttttccaaactggaggataactgtatcctcgtcaccttttccatcaggttggatttggtccatcgttgccactagctgaaagattgttacagatgcaacggtgacccttccatggaaatttaaacaccaacattgcaaatgctcatgccatcttggagctttgttttttagaactgtagagttggcttttgcggaaccaaccagcttcttcttcagagcatcctgagatttgtccgaggcagcttctccaggacaggggcaattgagcgaacaaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="75003" stop="73826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74703" g_stop="74126" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="587" r_length="579" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E369200" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74703" e_stop="74126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGAAAACTCCGCTATTTGTTACATTGATGTTGAAATTCTCATAAAGGTTAAATTACACTTGGTCCCAACATCTGCTACATTTACTAAATAGCACGAGTAGAGAATAC-TAGATTAAACAAGTGTCACTGTGCACCCGAAGAAAACGAAAAAACGAAAAGCAAACTAGGAAGTATATTACAAGTTCTAAAGAATCTATTCACAGGCCAATTTAGTGCCAAAACTGGTCAGGCAAATTGCAAACGCTTGGAAAGCAGACAAAGGCTTCCTGTAGTCCATTGTAAAAACATCATCTCCTACTTTTCCAAACTGGAGGATAACTGTATCCTCGTCACCTTTTCCATCAGGTTGGCTTTGGTCCATCGTTGCCACTAGCTGAAAGTTTTTCACAGATGCAACGGTGACCCTTCCATGGAAATTTAAACACCAACATTGCAAATGCTCATGCCATCTTGGAGCTTTGTTTTTCAGAACTGTAGAGTTGGCTTCTGCGGAACCAACCAGCTTCTTCTTCAGAGCATCCTGAGATTTGTCCGAGGCAGCTTCTCCAGGACAGGGGCAATTGAGCGAACAAATCA</genome_strand>
        <mrna_strand>TACAGAAAACTCCGCTATTTGTTACATTGATGTTGAAATTCTAATAAAGGTTAAATTACACTTGGTCCCAACATCTGCTACATTTACTAAATAGCACGAGTAGAGAATACGTAGATTAAACAAGTGTCACTGTGCACCCGAAGAAAACGAAAAAACGAAAAGCAAACTAGGAAGTATATTACAAGTTCTAAAGAATCTATTCACAGGCCAATTTAGTGCCAAAACTGGTCAGGCAAATTGCAAACGCTTGGAAAGCAGACAAAGGCTTCCTGTAGTCCATTGTAAAAACATCATCTCCTACTTTTCCAAACTGGAGGATAACTGTATCCTCGTCACCTTTTCCATCAGGTTGGATTTGGTCCATCGTTGCCACTAGCTGAAAGATTGTTACAGATGCAACGGTGACCCTTCCATGGAAATTTAAACACCAACATTGCAAATGCTCATGCCATCTTGGAGCTTTGTTTTTTAGAACTGTAGAGTTGGCTTTTGCGGAACCAACCAGCTTCTTCTTCAGAGCATCCTGAGATTTGTCCGAGGCAGCTTCTCCAGGACAGGGGCAATTGAGCGAACAAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E623498" ref_strand="+" ref_description="SGN-E623498 [88591]">
      <seq>taaaaacaaagctccacgatggcatgagcatttgcaatgttggtgtttaaatttccacggaagggtcacggttgcatctgtgaaaaactttcagctagttgcaacgatggaccaaagccaacctgatggaaaaggtgacgaagatacagttatactccagtttgggaaagtaggagatgatgtttttacaatggactacaggaagccgttatctgctttccaagcgtttgcaatttgcctgaccagttttggtacaaaattggcctgtgaatagattcttaataacttgtaatatgcttcctagtttgctttcatcttctttttctttgggtgcacaatgacacttttatttaatctagtattctctactcgtgctatatctaaatttagtaaatgttgggaccaagtgtaatttaacctttatgagaatttcaacatcaatgtaacaaatagcggagttctctgtactacacggggtaatttcctcgaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="73936" stop="75031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74235" g_stop="74712" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="489" polyA_stop="515"/>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E623498" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E623498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74235" e_stop="74712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACAAAGCTCCAAGATGGCATGAGCATTTGCAATGTTGGTGTTTAAATTTCCATGGAAGGGTCACCGTTGCATCTGTGAAAAACTTTCAGCTAGTGGCAACGATGGACCAAAGCCAACCTGATGGAAAAGGTGACGAGGATACAGTTATCCTCCAGTTTGGAAAAGTAGGAGATGATGTTTTTACAATGGACTACAGGAAGCCTTTGTCTGCTTTCCAAGCGTTTGCAATTTGCCTGACCAGTTTTGGCACTAAATTGGCCTGTGAATAGATTCTTTAGAACTTGTAATATACTTCCTAGTTTGCTTTTCGTTTTTTCGTTTTCTTCGGGTGCACAGTGACAC--TTGTTTAATCTAGTATTCTCTACTCGTGCTATTTAGTAAATGTAGCAGATGTTGGGACCAAGTGTAATTTAACCTTTATGAGAATTTCAACATCAATGTAACAAATAGCGGAGTTTTCTGTACTACTCGGG</genome_strand>
        <mrna_strand>TAAAAACAAAGCTCCACGATGGCATGAGCATTTGCAATGTTGGTGTTTAAATTTCCACGGAAGGGTCACGGTTGCATCTGTGAAAAACTTTCAGCTAGTTGCAACGATGGACCAAAGCCAACCTGATGGAAAAGGTGACGAAGATACAGTTATACTCCAGTTTGGGAAAGTAGGAGATGATGTTTTTACAATGGACTACAGGAAGCCGTTATCTGCTTTCCAAGCGTTTGCAATTTGCCTGACCAGTTTTGGTACAAAATTGGCCTGTGAATAGATTCTTAATAACTTGTAATATGCTTCCTAGTTTGC-TTTC--ATCTTCTTTTTCTTTGGGTGCACAATGACACTTTTATTTAATCTAGTATTCTCTACTCGTGCTATAT-CTAAATTTAGTAAATGTTGGGACCAAGTGTAATTTAACCTTTATGAGAATTTCAACATCAATGTAACAAATAGCGGAGTTCTCTGTACTACACGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E393360" ref_strand="+" ref_description="SGN-E393360 [TUS-38-B23]">
      <seq>tttttttttttagggcaattattattatttttatatagaagaggtaacatctccaccattatagaattgtagcatcaaattatattccacaaagcaaatggatatacttgacatattcccatatgccacctatgtcttccattatatctcaagtgctgatctgaagaatgacggggatgtcatgcttcaagagactgagaacttttttctcaagaaaacgggaagcacaagataacatcccttgcacaagcataaacgtcttatttttccacagaaataacacccatgtagccaagaaaatccagaaccatcgatccatacaaaggcacaagcacccataatggctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="74552" stop="75488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74842" g_stop="75188" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E393360" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74842" e_stop="75188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTCACATAGGGCAATTATTATTATTTTTATATAGAAGAGGTAACATCTCCATTAGTATAGAATTGTAGCATCAAATTATATTCCACAAAGCAAATGGATATACTTGACATATTCCCATATGCCAATTATGTCTTCCATTATATCTCAAGTGCTGATCTGAAGAATGACGGGGATGTCATGCTTCAAGAGACTGAGAACTTTTTTCTCAAGAAAACGGGAAGCACAAGATAACATCCCTTGCACAAGCATAAACGTCTTATTTTTCCACAGAAATAACACCCATGTAGCCAAG-AAATCCAGAACCATCGATCCATACAAAGGCACAAGCACCCATAGTGGCTAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTAGGGCAATTATTATTATTTTTATATAGAAGAGGTAACATCTCCACCATTATAGAATTGTAGCATCAAATTATATTCCACAAAGCAAATGGATATACTTGACATATTCCCATATGCCACCTATGTCTTCCATTATATCTCAAGTGCTGATCTGAAGAATGACGGGGATGTCATGCTTCAAGAGACTGAGAACTTTTTTCTCAAGAAAACGGGAAGCACAAGATAACATCCCTTGCACAAGCATAAACGTCTTATTTTTCCACAGAAATAACACCCATGTAGCCAAGAAAATCCAGAACCATCGATCCATACAAAGGCACAAGCACCCATAATGGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E373474" ref_strand="-" ref_description="SGN-E373474 [TUS-31-P18]">
      <seq>accttgaacaccaggaaacttgatgaagatactgagaatctggctcatcaaaaagtaccgactgagctgaagaaagccatcatgcaagctcgacaagataagaagctgactcagtctcaacttgctcagctgataaatgagaagcctcaaatcatccaggagtacgagtcaggaaaggcaattccaaatcaacaaatcatctctaaactggagagagctcttggtgccaaacttagaggaaagaaatgaagagcctcttggcttctcaaatctctattccagttctaactgtagttatgtacatggacaactttttctgttagccctctttctatagccactatgggtgcttgtgcctttgtatggatcgatggttctggatttcttggctacatgggtgttatttctgtggaaaaataagacgtttatgcttgtgcaagggatgttatcttgtgcttcccgttttcttgagaaaaaagttctcagtctcttgaagcatgacatccccgtcattcttcagatcagcacttgagatataatggaagacataattggcatatgggaatatgtcaagtatatccatttgctttgtggaatataatttgatgctacaattctatactaatggagatgttacctcttctatataaaaataataataattgccctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="76676" stop="74552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76376" g_stop="76331" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76330" i_stop="75621" i_length="710">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75620" g_stop="75538" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="129" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75537" i_stop="75393" i_length="145">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75392" g_stop="74843" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="679" r_length="550" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E373474" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373474" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="76376" e_stop="76331"/>
          <exon e_start="75620" e_stop="75538"/>
          <exon e_start="75392" e_stop="74843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTGAACACCAGGAAACTTGATGAAGATACTGAGAATCTGGCTCGTAAGTTAAAGCAACACCTTTTACAACTTAATTAGAAATGTGTGTACGAGCATACATATTTATGTTGTGTTCTTTTGGTTGAAGTCATGCTTGCTTATAATTGTTCTTTGGTGTTAACTTTGATCTCCTCTACATTATTTTGATGGTATTATGTTAACTACTTCTGATGTTTCAAACACATACTTCCATCATTGAATGTGTATGCAAGATTTTGAAATTTCTTTGAACTTCATTATAATGAGAAGAAGATGCCTTCTTAAGGTCTGTGAATCTAAATGTTTTGGGAACACATCTACCCTGTCAAATGAAAATCATCCTTAATATTCTCTCTGCATCTCTACTGCTTTATTCATAAACACATTACGCAGTCTGCTCTATTCGTTCCCGCTAGAAATCGTTTTATTCAACATCCATAATTCTTATGCATGTGATGTCACGTTGCTGGAGATAGTGGTTAATAACTTTATTTCATTTGTGTTCTCGCTCTTCTCTTTTATATGTTCTCTTTCTTCCGTTCTGATAGATCTCCTGCTATTTAATGATCTAATTTTGTTATTTGAGCTGTGTTTGAGTTCTGTATCTGTTTCTACTCGTTTATGTATGCATTTCATCCTCAGCAAACAATATAGTAATATTTTTTACCACAACTAACTCATTCTTCCGTATGACATTTTCTGTTTGAAATTTTTCATTTTTTACCTTGTTGTCAGATCAAAAAGTACCGACTGAGCTGAAGAAAGCCATCATGCAAGCTCGACAAGATAAGAAGCTGACTCAGTCTCAACTTGCTCAGGTATACCATTTTTCTGTCTCCCTGCTCCCCTCCTGCCACCCAAAGACTTAAGAGAGGGGGGTGGGGGGTTGAACAGATTGAGAGTACCAGATGACTGATTCGATAATCTGTGAAAATGGTTCTGATATTCCTTGTTGTTTTGCAGCTGATAAATGAGAAGCCTCAAATCATCCAGGAGTACGAGTCAGGAAAGGCAATTCCAAATCAACAAATCATCTCTAAACTGGAGAGAGCTCTTGGTGCCAAACTTAGAGGAAAGAAATGAAGAGCCTCTTGGCTTCTCAAATCTCTATTCCAGTTCTAACTGTAGTTATGTACATGGACAACTTTTTCTGTTAGCCCTCTTTCTATAGCCACTATGGGTGCTTGTGCCTTTGTATGGATCGATGGTTCTGGATTTCTTGGCTACATGGGTGTTATTTCTGTGGAAAAATAAGACGTTTATGCTTGTGCAAGGGATGTTATCTTGTGCTTCCCGTTTTCTTGAGAAAAAAGTTCTCAGTCTCTTGAAGCATGACATCCCCGTCATTCTTCAGATCAGCACTTGAGATATAATGGAAGACATAATTGGCATATGGGAATATGTCAAGTATATCCATTTGCTTTGTGGAATATAATTTGATGCTACAATTCTATACTAATGGAGATGTTACCTCTTCTATATAAAAATAATAATAATTGCCCTATGTGAATGA</genome_strand>
        <mrna_strand>ACCTTGAACACCAGGAAACTTGATGAAGATACTGAGAATCTGGCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAAGTACCGACTGAGCTGAAGAAAGCCATCATGCAAGCTCGACAAGATAAGAAGCTGACTCAGTCTCAACTTGCTCAG.................................................................................................................................................CTGATAAATGAGAAGCCTCAAATCATCCAGGAGTACGAGTCAGGAAAGGCAATTCCAAATCAACAAATCATCTCTAAACTGGAGAGAGCTCTTGGTGCCAAACTTAGAGGAAAGAAATGAAGAGCCTCTTGGCTTCTCAAATCTCTATTCCAGTTCTAACTGTAGTTATGTACATGGACAACTTTTTCTGTTAGCCCTCTTTCTATAGCCACTATGGGTGCTTGTGCCTTTGTATGGATCGATGGTTCTGGATTTCTTGGCTACATGGGTGTTATTTCTGTGGAAAAATAAGACGTTTATGCTTGTGCAAGGGATGTTATCTTGTGCTTCCCGTTTTCTTGAGAAAAAAGTTCTCAGTCTCTTGAAGCATGACATCCCCGTCATTCTTCAGATCAGCACTTGAGATATAATGGAAGACATAATTGGCATATGGGAATATGTCAAGTATATCCATTTGCTTTGTGGAATATAATTTGATGCTACAATTCTATACTAATGGAGATGTTACCTCTTCTATATAAAAATAATAATAATTGCCCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E373388" ref_strand="-" ref_description="SGN-E373388 [TUS-31-P17]">
      <seq>aagccatcatgcaagctcgacaagataagaagctgactcagtctcaacttgctcagctgataaatgagaagcctcaaatcatccaggagtacgagtcaggaaaggcaattccaaatcaacaaatcatctctaaactggagagagctcttggtgccaaacttagaggaaagaaatgaagagcctcttggcttctcaaatctctattccagttctaactgtagttatgtacatggacaactttttctgttagccctctttctatagccactatgggtgcttgtgcctttgtatggatcgatggttctggatttcttggctacatgggtgttatttctgtggaaaaataagacgtttatgcttgtgcaagggatgttatcttgtgcttcccgttttcttgagaaaaaagttctcagtctcttgaagcatgacatccccgtcattcttcagatcagcacttgagatataatggaagacataattggcatatgggaatatgtcaagtatatccatttgctttgtggaatataatttgatgctacaattctatactaatggagatgttacctcttctatattaaaataataataattgccctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="75893" stop="74552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75593" g_stop="75538" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75537" i_stop="75393" i_length="145">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75392" g_stop="74843" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="606" r_length="550" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E373388" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373388" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75593" e_stop="75538"/>
          <exon e_start="75392" e_stop="74843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCATCATGCAAGCTCGACAAGATAAGAAGCTGACTCAGTCTCAACTTGCTCAGGTATACCATTTTTCTGTCTCCCTGCTCCCCTCCTGCCACCCAAAGACTTAAGAGAGGGGGGTGGGGGGTTGAACAGATTGAGAGTACCAGATGACTGATTCGATAATCTGTGAAAATGGTTCTGATATTCCTTGTTGTTTTGCAGCTGATAAATGAGAAGCCTCAAATCATCCAGGAGTACGAGTCAGGAAAGGCAATTCCAAATCAACAAATCATCTCTAAACTGGAGAGAGCTCTTGGTGCCAAACTTAGAGGAAAGAAATGAAGAGCCTCTTGGCTTCTCAAATCTCTATTCCAGTTCTAACTGTAGTTATGTACATGGACAACTTTTTCTGTTAGCCCTCTTTCTATAGCCACTATGGGTGCTTGTGCCTTTGTATGGATCGATGGTTCTGGATTTCTTGGCTACATGGGTGTTATTTCTGTGGAAAAATAAGACGTTTATGCTTGTGCAAGGGATGTTATCTTGTGCTTCCCGTTTTCTTGAGAAAAAAGTTCTCAGTCTCTTGAAGCATGACATCCCCGTCATTCTTCAGATCAGCACTTGAGATATAATGGAAGACATAATTGGCATATGGGAATATGTCAAGTATATCCATTTGCTTTGTGGAATATAATTTGATGCTACAATTCTATACTAATGGAGATGTTACCTCTTCTATATAAAAATAATAATAATTGCCCTATGTGAATGA</genome_strand>
        <mrna_strand>AAGCCATCATGCAAGCTCGACAAGATAAGAAGCTGACTCAGTCTCAACTTGCTCAG.................................................................................................................................................CTGATAAATGAGAAGCCTCAAATCATCCAGGAGTACGAGTCAGGAAAGGCAATTCCAAATCAACAAATCATCTCTAAACTGGAGAGAGCTCTTGGTGCCAAACTTAGAGGAAAGAAATGAAGAGCCTCTTGGCTTCTCAAATCTCTATTCCAGTTCTAACTGTAGTTATGTACATGGACAACTTTTTCTGTTAGCCCTCTTTCTATAGCCACTATGGGTGCTTGTGCCTTTGTATGGATCGATGGTTCTGGATTTCTTGGCTACATGGGTGTTATTTCTGTGGAAAAATAAGACGTTTATGCTTGTGCAAGGGATGTTATCTTGTGCTTCCCGTTTTCTTGAGAAAAAAGTTCTCAGTCTCTTGAAGCATGACATCCCCGTCATTCTTCAGATCAGCACTTGAGATATAATGGAAGACATAATTGGCATATGGGAATATGTCAAGTATATCCATTTGCTTTGTGGAATATAATTTGATGCTACAATTCTATACTAATGGAGATGTTACCTCTTCTATATTAAAATAATAATAATTGCCCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E738748" ref_strand="+" ref_description="SGN-E738748 [LC14DD10]">
      <seq>gcgaagagaagcaagagagagatttttcgagcaaagaaaaaaaaaatatgagtggaggattatcacaagactgggagccggtggtgatccggaagaaggcaccgaccgccgccgcacgcaaggatgagaaagctgtcaacgctgcccgtcgctccggtgctgagatcgaaactatcagaaaatcaactgctggctcaaacagggctgcctctagtagtacgaccttgaacaccaggaaacttgatgaagatactgagaatctggctcatcaaaaagtaccgactgagctgaagaaagccatcatgcaagctcgacaagataagaagctgactcagtctcaacttgctcagctgataaatgagaagcctcaaatcatccaggagtacgagtcaggaaaggccattccaaatcaacaaatcatctctaaactggagagagctcttggtgccaaacttagaggaaagaaatgaagagcctcttggcttctcaaatctctattccagttctaactgtagttatgtacatggacaactttttctgttagccctctttctatagccactatggtgcttgtgcctttgtagggatcgatggttctggatttcttggctacttgggtgttatttctgtggaaaaataagacgtttatgcttgtgcaagggatgttatcttgtgcttcccgttttcttgagaaaaaagttctcagtctcttgaagcatgacatccccgtcattcttcagatcagcacttgagatataatggaagacataattggcatatgggaatatgtcaagtatatccatttgctttgtggaatataatttgatgctacaattctatactaatggagatgttacctcttctatataaaaataataataattgccctatgtgaatgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="77969" stop="74543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77669" g_stop="77487" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77486" i_stop="76415" i_length="1072">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76414" g_stop="76331" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="267" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76330" i_stop="75621" i_length="710">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75620" g_stop="75538" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="350" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75537" i_stop="75393" i_length="145">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75392" g_stop="74844" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="898" r_length="548" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E738748" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>899</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77669" e_stop="77487"/>
          <exon e_start="76414" e_stop="76331"/>
          <exon e_start="75620" e_stop="75538"/>
          <exon e_start="75392" e_stop="74844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAAGAGAAGCAAGAGAGAGATTTTTCGAGCAAAGAAAAAAAAAATATGAGTGGAGGATTATCACAAGACTGGGAGCCGGTGGTGATCCGGAAGAAGGCACCGACCGCCGCCGCACGCAAGGATGAGAAAGCTGTCAACGCTGCCCGTCGCTCCGGTGCTGAGATCGAAACTATCAGAAAATGTTCGTATTCTCGTCGCTGCTTCGTTTTTTTCATCTCTACAAAGCTCATATATATGATGATGTTCTAACTATAAACGTTAGCTTAATCATTTCTTCGATTGATCGTATAATCTGTTAATTTTATTTCGATAGAGATTTTCAGCTCGATTATTGTTGCTGGCTCTTGTATTGCTTAATTTTCTTATTTCTATATGCAGGTCCGATTATGCTAAGTCTTCAGCTAGGGTTTTCATTTTTTATTTTTTTTTTGGTTAGGATTGTTTGATTGATTGATGTACATGCCTATTTTAAGCTATTTCAAGTATGTACGTTGTTTAGTTGACATGTTTCTTGGTATATGGATAGCTTAAGGACTGGTGTATTATCTCTGCTGTGGTGTAGGGTTGCTTATGAAGACCAAACTTGTTGATTTTCATGAGAATCAGAGCTTCCGGTTGCTGGAAATAACTGTTTTCTGCTTATTTTGTGTAGATTGAAGTCTTATATCATCCTTCCCGTGCCGGTCTAATTTCCATATTCTTGCGTACACATGTAACTAAGAAAGTTGAGTAGAAGTATAATCCTTAAACGTGTCTTCCTATCCTTTCATACTAGAATTTAAATAATTGTTGTATTGCATCATGCTACCTTCTTTCATTTGAAACTCGAAGTTTCTTTCAATCTACATTGATTCTGGAGATCTATAGTTGAATCTGGTTACGAGAAACCGTAAGGTGTGAATGAAAATGAATTCCCTATTTGTAGAGATGGTATATTTGATGGCACATATCTAACATTTCTTGATTTTGATATACATTTTTCCAGTGCGTTGCAGTTACTTTAGAATATATTCTTTGTTGTTAGAATGTAAACTTTTACAAATATGAGGGTCCTTGCATGGCAATATGATGAGTTCTATTGAATACTCTCTTTTGAGCTCCCCCACCCCCCACAGACACACAAATCTTTCCATCCAGAGTCCCTTCCTTTTTTTTTCCCAATTTCTATGTTGCCCGGTTTTCCTATTAGTAAACTTGTGCGTAATTTTTTTTGAGTGATTGTTGGTGCTTACAATATCTATCTTCTATTGCAGCAACTGCTGGCTCAAACAGGGCTGCCTCTAGTAGTACGACCTTGAACACCAGGAAACTTGATGAAGATACTGAGAATCTGGCTCGTAAGTTAAAGCAACACCTTTTACAACTTAATTAGAAATGTGTGTACGAGCATACATATTTATGTTGTGTTCTTTTGGTTGAAGTCATGCTTGCTTATAATTGTTCTTTGGTGTTAACTTTGATCTCCTCTACATTATTTTGATGGTATTATGTTAACTACTTCTGATGTTTCAAACACATACTTCCATCATTGAATGTGTATGCAAGATTTTGAAATTTCTTTGAACTTCATTATAATGAGAAGAAGATGCCTTCTTAAGGTCTGTGAATCTAAATGTTTTGGGAACACATCTACCCTGTCAAATGAAAATCATCCTTAATATTCTCTCTGCATCTCTACTGCTTTATTCATAAACACATTACGCAGTCTGCTCTATTCGTTCCCGCTAGAAATCGTTTTATTCAACATCCATAATTCTTATGCATGTGATGTCACGTTGCTGGAGATAGTGGTTAATAACTTTATTTCATTTGTGTTCTCGCTCTTCTCTTTTATATGTTCTCTTTCTTCCGTTCTGATAGATCTCCTGCTATTTAATGATCTAATTTTGTTATTTGAGCTGTGTTTGAGTTCTGTATCTGTTTCTACTCGTTTATGTATGCATTTCATCCTCAGCAAACAATATAGTAATATTTTTTACCACAACTAACTCATTCTTCCGTATGACATTTTCTGTTTGAAATTTTTCATTTTTTACCTTGTTGTCAGATCAAAAAGTACCGACTGAGCTGAAGAAAGCCATCATGCAAGCTCGACAAGATAAGAAGCTGACTCAGTCTCAACTTGCTCAGGTATACCATTTTTCTGTCTCCCTGCTCCCCTCCTGCCACCCAAAGACTTAAGAGAGGGGGGTGGGGGGTTGAACAGATTGAGAGTACCAGATGACTGATTCGATAATCTGTGAAAATGGTTCTGATATTCCTTGTTGTTTTGCAGCTGATAAATGAGAAGCCTCAAATCATCCAGGAGTACGAGTCAGGAAAGGCAATTCCAAATCAACAAATCATCTCTAAACTGGAGAGAGCTCTTGGTGCCAAACTTAGAGGAAAGAAATGAAGAGCCTCTTGGCTTCTCAAATCTCTATTCCAGTTCTAACTGTAGTTATGTACATGGACAACTTTTTCTGTTAGCCCTCTTTCTATAGCCACTATGGGTGCTTGTGCCTTTGTATGGATCGATGGTTCTGGATTTCTTGGCTACATGGGTGTTATTTCTGTGGAAAAATAAGACGTTTATGCTTGTGCAAGGGATGTTATCTTGTGCTTCCCGTTTTCTTGAGAAAAAAGTTCTCAGTCTCTTGAAGCATGACATCCCCGTCATTCTTCAGATCAGCACTTGAGATATAATGGAAGACATAATTGGCATATGGGAATATGTCAAGTATATCCATTTGCTTTGTGGAATATAATTTGATGCTACAATTCTATACTAATGGAGATGTTACCTCTTCTATATAAAAATAATAATAATTGCCCTATGTGAATG</genome_strand>
        <mrna_strand>GCGAAGAGAAGCAAGAGAGAGATTTTTCGAGCAAAGAAAAAAAAAATATGAGTGGAGGATTATCACAAGACTGGGAGCCGGTGGTGATCCGGAAGAAGGCACCGACCGCCGCCGCACGCAAGGATGAGAAAGCTGTCAACGCTGCCCGTCGCTCCGGTGCTGAGATCGAAACTATCAGAAAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTGCTGGCTCAAACAGGGCTGCCTCTAGTAGTACGACCTTGAACACCAGGAAACTTGATGAAGATACTGAGAATCTGGCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAAGTACCGACTGAGCTGAAGAAAGCCATCATGCAAGCTCGACAAGATAAGAAGCTGACTCAGTCTCAACTTGCTCAG.................................................................................................................................................CTGATAAATGAGAAGCCTCAAATCATCCAGGAGTACGAGTCAGGAAAGGCCATTCCAAATCAACAAATCATCTCTAAACTGGAGAGAGCTCTTGGTGCCAAACTTAGAGGAAAGAAATGAAGAGCCTCTTGGCTTCTCAAATCTCTATTCCAGTTCTAACTGTAGTTATGTACATGGACAACTTTTTCTGTTAGCCCTCTTTCTATAGCCACTAT-GGTGCTTGTGCCTTTGTAGGGATCGATGGTTCTGGATTTCTTGGCTACTTGGGTGTTATTTCTGTGGAAAAATAAGACGTTTATGCTTGTGCAAGGGATGTTATCTTGTGCTTCCCGTTTTCTTGAGAAAAAAGTTCTCAGTCTCTTGAAGCATGACATCCCCGTCATTCTTCAGATCAGCACTTGAGATATAATGGAAGACATAATTGGCATATGGGAATATGTCAAGTATATCCATTTGCTTTGTGGAATATAATTTGATGCTACAATTCTATACTAATGGAGATGTTACCTCTTCTATATAAAAATAATAATAATTGCCCTATGTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E292122" ref_strand="-" ref_description="SGN-E292122 [cLET-1-K9]">
      <seq>tccaaatcaacaaatcatctctaaactggagagagctcttggtgccaaacttagaggaaagaaatgaagagcctcttggcttctcaaatctctattccagttctaactgtagttatgtacatggacaactttttctgttagccctctttctatagccactatgggtgcttgtgcctttgtatggatcgatggttctggatttcttggctacatgggtgttatttctgtggaaaaataagacgtttatgcttgtgcaagggatgttatcttgtgcttcccgttttcttgagaaaaaagttctcagtctcttgaagcatgacatccccgtcattcttcagatcagcacttgagatataatggaagacataattggcatatgggaatatgtcaagtatatccatttgctttgtggaatataatttgatgctacaattctatactaatggagatgttacctcttcaatataaaaataataataattgccctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="75639" stop="74552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75339" g_stop="74853" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="488" polyA_stop="500"/>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E292122" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292122" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75339" e_stop="74853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAATCAACAAATCATCTCTAAACTGGAGAGAGCTCTTGGTGCCAAACTTAGAGGAAAGAAATGAAGAGCCTCTTGGCTTCTCAAATCTCTATTCCAGTTCTAACTGTAGTTATGTACATGGACAACTTTTTCTGTTAGCCCTCTTTCTATAGCCACTATGGGTGCTTGTGCCTTTGTATGGATCGATGGTTCTGGATTTCTTGGCTACATGGGTGTTATTTCTGTGGAAAAATAAGACGTTTATGCTTGTGCAAGGGATGTTATCTTGTGCTTCCCGTTTTCTTGAGAAAAAAGTTCTCAGTCTCTTGAAGCATGACATCCCCGTCATTCTTCAGATCAGCACTTGAGATATAATGGAAGACATAATTGGCATATGGGAATATGTCAAGTATATCCATTTGCTTTGTGGAATATAATTTGATGCTACAATTCTATACTAATGGAGATGTTACCTCTTCTATATAAAAATAATAATAATTGCCCT</genome_strand>
        <mrna_strand>TCCAAATCAACAAATCATCTCTAAACTGGAGAGAGCTCTTGGTGCCAAACTTAGAGGAAAGAAATGAAGAGCCTCTTGGCTTCTCAAATCTCTATTCCAGTTCTAACTGTAGTTATGTACATGGACAACTTTTTCTGTTAGCCCTCTTTCTATAGCCACTATGGGTGCTTGTGCCTTTGTATGGATCGATGGTTCTGGATTTCTTGGCTACATGGGTGTTATTTCTGTGGAAAAATAAGACGTTTATGCTTGTGCAAGGGATGTTATCTTGTGCTTCCCGTTTTCTTGAGAAAAAAGTTCTCAGTCTCTTGAAGCATGACATCCCCGTCATTCTTCAGATCAGCACTTGAGATATAATGGAAGACATAATTGGCATATGGGAATATGTCAAGTATATCCATTTGCTTTGTGGAATATAATTTGATGCTACAATTCTATACTAATGGAGATGTTACCTCTTCAATATAAAAATAATAATAATTGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E233934" ref_strand="-" ref_description="SGN-E233934 [cLEL-8-E12]">
      <seq>atggttctggatttcttggctacatgggtgttatttctgggaaaaaataagacgtttatgcttgtgcaagggatgttatcttgtgcttcccgttttcttgagaaaaaagttctcagtctcttgaagcatgacatccccgtcattcttcagatcagcacttgagatataatggaagacataattggcatatgggaatatgtcaagtatatccatttgctttgtggaatataatttgatgctacaattctatactaatggagatgttacctcttctatataaaaataataataattgccctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="75451" stop="74552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75151" g_stop="74853" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="300" polyA_stop="317"/>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E233934" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233934" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75151" e_stop="74853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTCTGGATTTCTTGGCTACATGGGTGTTATTTCTGTGGAAAAATAAGACGTTTATGCTTGTGCAAGGGATGTTATCTTGTGCTTCCCGTTTTCTTGAGAAAAAAGTTCTCAGTCTCTTGAAGCATGACATCCCCGTCATTCTTCAGATCAGCACTTGAGATATAATGGAAGACATAATTGGCATATGGGAATATGTCAAGTATATCCATTTGCTTTGTGGAATATAATTTGATGCTACAATTCTATACTAATGGAGATGTTACCTCTTCTATATAAAAATAATAATAATTGCCCT</genome_strand>
        <mrna_strand>ATGGTTCTGGATTTCTTGGCTACATGGGTGTTATTTCTGGGAAAAAATAAGACGTTTATGCTTGTGCAAGGGATGTTATCTTGTGCTTCCCGTTTTCTTGAGAAAAAAGTTCTCAGTCTCTTGAAGCATGACATCCCCGTCATTCTTCAGATCAGCACTTGAGATATAATGGAAGACATAATTGGCATATGGGAATATGTCAAGTATATCCATTTGCTTTGTGGAATATAATTTGATGCTACAATTCTATACTAATGGAGATGTTACCTCTTCTATATAAAAATAATAATAATTGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E711097" ref_strand="+" ref_description="SGN-E711097 [FB01AA10]">
      <seq>cacttagcgaagagaagcaagagagagatttttcgagcaaagaaaaaaaaaatatgagtggaggattatcacaagactgggagccggtggtgatccggaagaaggcaccgaccgccgccgcacgcaaggatgagaaagctgtcaacgctgcccgtcgctccggtgctgagatcgaaactatcagaaaatcaactgctggctcaaacagggctgcctctagtagtacgaccttgaacaccaggaaacttgatgaagatactgagaatctggctcatcaaaaagtaccgactgagctgaagaaagccatcatgcaagctcgacaagataagaagctgactcagtctcaacttgctcagctgataaatgagaagcctcaaatcatccaggagtacgagtcaggaaaggccattccaaatcaacaaatcatctctaaactggagagagctcttggtgccaaacttagaggaaagaaatgaagagcctcttggcttctcaaatctctattccagttctaactgtagttatgtacatggacaactttttctgttagccctctttctatagccactatggtgcttgtgcctttgtagggatcgatggttctggatttcttggctacttgggtgttatttctgtggaaaaataagacgtttatgcttgtgcaagggatgttatcttgtgcttcccgttttcttgagaaaaaagttctcagtctcttgaagcatgacatccccgtcattcttcagatcagcacttgagatataatggaagacataattggcatatgggaatatgtcaagtatatccatttgctttgtggaatataatttgatgctacaattctatactaatggagatgttacctcttctatataaaaataaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="77974" stop="74560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77675" g_stop="77487" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77486" i_stop="76415" i_length="1072">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76414" g_stop="76331" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="273" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76330" i_stop="75621" i_length="710">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75620" g_stop="75538" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="356" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75537" i_stop="75393" i_length="145">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75392" g_stop="74860" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="888" r_length="532" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E711097" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>889</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77675" e_stop="77487"/>
          <exon e_start="76414" e_stop="76331"/>
          <exon e_start="75620" e_stop="75538"/>
          <exon e_start="75392" e_stop="74860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAGCGAAGAGAAGCAAGAGAGAGATTTTTCGAGCAAAGAAAAAAAAAATATGAGTGGAGGATTATCACAAGACTGGGAGCCGGTGGTGATCCGGAAGAAGGCACCGACCGCCGCCGCACGCAAGGATGAGAAAGCTGTCAACGCTGCCCGTCGCTCCGGTGCTGAGATCGAAACTATCAGAAAATGTTCGTATTCTCGTCGCTGCTTCGTTTTTTTCATCTCTACAAAGCTCATATATATGATGATGTTCTAACTATAAACGTTAGCTTAATCATTTCTTCGATTGATCGTATAATCTGTTAATTTTATTTCGATAGAGATTTTCAGCTCGATTATTGTTGCTGGCTCTTGTATTGCTTAATTTTCTTATTTCTATATGCAGGTCCGATTATGCTAAGTCTTCAGCTAGGGTTTTCATTTTTTATTTTTTTTTTGGTTAGGATTGTTTGATTGATTGATGTACATGCCTATTTTAAGCTATTTCAAGTATGTACGTTGTTTAGTTGACATGTTTCTTGGTATATGGATAGCTTAAGGACTGGTGTATTATCTCTGCTGTGGTGTAGGGTTGCTTATGAAGACCAAACTTGTTGATTTTCATGAGAATCAGAGCTTCCGGTTGCTGGAAATAACTGTTTTCTGCTTATTTTGTGTAGATTGAAGTCTTATATCATCCTTCCCGTGCCGGTCTAATTTCCATATTCTTGCGTACACATGTAACTAAGAAAGTTGAGTAGAAGTATAATCCTTAAACGTGTCTTCCTATCCTTTCATACTAGAATTTAAATAATTGTTGTATTGCATCATGCTACCTTCTTTCATTTGAAACTCGAAGTTTCTTTCAATCTACATTGATTCTGGAGATCTATAGTTGAATCTGGTTACGAGAAACCGTAAGGTGTGAATGAAAATGAATTCCCTATTTGTAGAGATGGTATATTTGATGGCACATATCTAACATTTCTTGATTTTGATATACATTTTTCCAGTGCGTTGCAGTTACTTTAGAATATATTCTTTGTTGTTAGAATGTAAACTTTTACAAATATGAGGGTCCTTGCATGGCAATATGATGAGTTCTATTGAATACTCTCTTTTGAGCTCCCCCACCCCCCACAGACACACAAATCTTTCCATCCAGAGTCCCTTCCTTTTTTTTTCCCAATTTCTATGTTGCCCGGTTTTCCTATTAGTAAACTTGTGCGTAATTTTTTTTGAGTGATTGTTGGTGCTTACAATATCTATCTTCTATTGCAGCAACTGCTGGCTCAAACAGGGCTGCCTCTAGTAGTACGACCTTGAACACCAGGAAACTTGATGAAGATACTGAGAATCTGGCTCGTAAGTTAAAGCAACACCTTTTACAACTTAATTAGAAATGTGTGTACGAGCATACATATTTATGTTGTGTTCTTTTGGTTGAAGTCATGCTTGCTTATAATTGTTCTTTGGTGTTAACTTTGATCTCCTCTACATTATTTTGATGGTATTATGTTAACTACTTCTGATGTTTCAAACACATACTTCCATCATTGAATGTGTATGCAAGATTTTGAAATTTCTTTGAACTTCATTATAATGAGAAGAAGATGCCTTCTTAAGGTCTGTGAATCTAAATGTTTTGGGAACACATCTACCCTGTCAAATGAAAATCATCCTTAATATTCTCTCTGCATCTCTACTGCTTTATTCATAAACACATTACGCAGTCTGCTCTATTCGTTCCCGCTAGAAATCGTTTTATTCAACATCCATAATTCTTATGCATGTGATGTCACGTTGCTGGAGATAGTGGTTAATAACTTTATTTCATTTGTGTTCTCGCTCTTCTCTTTTATATGTTCTCTTTCTTCCGTTCTGATAGATCTCCTGCTATTTAATGATCTAATTTTGTTATTTGAGCTGTGTTTGAGTTCTGTATCTGTTTCTACTCGTTTATGTATGCATTTCATCCTCAGCAAACAATATAGTAATATTTTTTACCACAACTAACTCATTCTTCCGTATGACATTTTCTGTTTGAAATTTTTCATTTTTTACCTTGTTGTCAGATCAAAAAGTACCGACTGAGCTGAAGAAAGCCATCATGCAAGCTCGACAAGATAAGAAGCTGACTCAGTCTCAACTTGCTCAGGTATACCATTTTTCTGTCTCCCTGCTCCCCTCCTGCCACCCAAAGACTTAAGAGAGGGGGGTGGGGGGTTGAACAGATTGAGAGTACCAGATGACTGATTCGATAATCTGTGAAAATGGTTCTGATATTCCTTGTTGTTTTGCAGCTGATAAATGAGAAGCCTCAAATCATCCAGGAGTACGAGTCAGGAAAGGCAATTCCAAATCAACAAATCATCTCTAAACTGGAGAGAGCTCTTGGTGCCAAACTTAGAGGAAAGAAATGAAGAGCCTCTTGGCTTCTCAAATCTCTATTCCAGTTCTAACTGTAGTTATGTACATGGACAACTTTTTCTGTTAGCCCTCTTTCTATAGCCACTATGGGTGCTTGTGCCTTTGTATGGATCGATGGTTCTGGATTTCTTGGCTACATGGGTGTTATTTCTGTGGAAAAATAAGACGTTTATGCTTGTGCAAGGGATGTTATCTTGTGCTTCCCGTTTTCTTGAGAAAAAAGTTCTCAGTCTCTTGAAGCATGACATCCCCGTCATTCTTCAGATCAGCACTTGAGATATAATGGAAGACATAATTGGCATATGGGAATATGTCAAGTATATCCATTTGCTTTGTGGAATATAATTTGATGCTACAATTCTATACTAATGGAGATGTTACCTCTTCTATATAAAAATAATAATAA</genome_strand>
        <mrna_strand>CACTTAGCGAAGAGAAGCAAGAGAGAGATTTTTCGAGCAAAGAAAAAAAAAATATGAGTGGAGGATTATCACAAGACTGGGAGCCGGTGGTGATCCGGAAGAAGGCACCGACCGCCGCCGCACGCAAGGATGAGAAAGCTGTCAACGCTGCCCGTCGCTCCGGTGCTGAGATCGAAACTATCAGAAAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTGCTGGCTCAAACAGGGCTGCCTCTAGTAGTACGACCTTGAACACCAGGAAACTTGATGAAGATACTGAGAATCTGGCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAAGTACCGACTGAGCTGAAGAAAGCCATCATGCAAGCTCGACAAGATAAGAAGCTGACTCAGTCTCAACTTGCTCAG.................................................................................................................................................CTGATAAATGAGAAGCCTCAAATCATCCAGGAGTACGAGTCAGGAAAGGCCATTCCAAATCAACAAATCATCTCTAAACTGGAGAGAGCTCTTGGTGCCAAACTTAGAGGAAAGAAATGAAGAGCCTCTTGGCTTCTCAAATCTCTATTCCAGTTCTAACTGTAGTTATGTACATGGACAACTTTTTCTGTTAGCCCTCTTTCTATAGCCACTAT-GGTGCTTGTGCCTTTGTAGGGATCGATGGTTCTGGATTTCTTGGCTACTTGGGTGTTATTTCTGTGGAAAAATAAGACGTTTATGCTTGTGCAAGGGATGTTATCTTGTGCTTCCCGTTTTCTTGAGAAAAAAGTTCTCAGTCTCTTGAAGCATGACATCCCCGTCATTCTTCAGATCAGCACTTGAGATATAATGGAAGACATAATTGGCATATGGGAATATGTCAAGTATATCCATTTGCTTTGTGGAATATAATTTGATGCTACAATTCTATACTAATGGAGATGTTACCTCTTCTATATAAAAATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E379788" ref_strand="-" ref_description="SGN-E379788 [TUS-1-I5]">
      <seq>aagaaggcaccgaccgccgccgcacgcaaggatgagaaagctgtcaacgctgcccgtcgctccggtgctgagatcgaaactatcagaaaatcaactgctggctcaaacagggctgcctctagtagtacgaccttgaacaccaggaaacttgatgaagatactgagaatctggctcatcaaaaagtaccgactgagctgaagaaagccatcatgcaagctcgacaagataagaagctgactcagtctcaacttgctcagctgataaatgagaagcctcaaatcatccaggagtacgagtcaggaaaggcaattccaaatcaacaaatcatctctaaactggagagagctcttggtgccaaacttagaggaaagaaatgaagagcctcttggcttctcaaatctctattccagttctaactgtagttatgtacatggacaactttttctgttagccctctttctatagccactatgggtgcttgtgcctttgtatggatcgatggttctggatttcttggctacatgggtgttatttctgtggaaaaataagacgtttatgcttgtgcaagggatgttatcttgtgcttcccgttttcttgagaaaaaagttctcagtctcttgaagcatgacatccccgtcattcttcagatcagcacttgagatataatggaagacataattggcatatgggaatatgtcaagtatatccatttgctttgtggaatataattggatgctacaattctatactttccgagatgtgatctcttctatataaaaataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="77877" stop="74565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77577" g_stop="77487" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77486" i_stop="76415" i_length="1072">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76414" g_stop="76331" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="175" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76330" i_stop="75621" i_length="710">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75620" g_stop="75538" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="258" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75537" i_stop="75393" i_length="145">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75392" g_stop="74865" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="786" r_length="528" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E379788" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379788" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="77577" e_stop="77487"/>
          <exon e_start="76414" e_stop="76331"/>
          <exon e_start="75620" e_stop="75538"/>
          <exon e_start="75392" e_stop="74865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGGCACCGACCGCCGCCGCACGCAAGGATGAGAAAGCTGTCAACGCTGCCCGTCGCTCCGGTGCTGAGATCGAAACTATCAGAAAATGTTCGTATTCTCGTCGCTGCTTCGTTTTTTTCATCTCTACAAAGCTCATATATATGATGATGTTCTAACTATAAACGTTAGCTTAATCATTTCTTCGATTGATCGTATAATCTGTTAATTTTATTTCGATAGAGATTTTCAGCTCGATTATTGTTGCTGGCTCTTGTATTGCTTAATTTTCTTATTTCTATATGCAGGTCCGATTATGCTAAGTCTTCAGCTAGGGTTTTCATTTTTTATTTTTTTTTTGGTTAGGATTGTTTGATTGATTGATGTACATGCCTATTTTAAGCTATTTCAAGTATGTACGTTGTTTAGTTGACATGTTTCTTGGTATATGGATAGCTTAAGGACTGGTGTATTATCTCTGCTGTGGTGTAGGGTTGCTTATGAAGACCAAACTTGTTGATTTTCATGAGAATCAGAGCTTCCGGTTGCTGGAAATAACTGTTTTCTGCTTATTTTGTGTAGATTGAAGTCTTATATCATCCTTCCCGTGCCGGTCTAATTTCCATATTCTTGCGTACACATGTAACTAAGAAAGTTGAGTAGAAGTATAATCCTTAAACGTGTCTTCCTATCCTTTCATACTAGAATTTAAATAATTGTTGTATTGCATCATGCTACCTTCTTTCATTTGAAACTCGAAGTTTCTTTCAATCTACATTGATTCTGGAGATCTATAGTTGAATCTGGTTACGAGAAACCGTAAGGTGTGAATGAAAATGAATTCCCTATTTGTAGAGATGGTATATTTGATGGCACATATCTAACATTTCTTGATTTTGATATACATTTTTCCAGTGCGTTGCAGTTACTTTAGAATATATTCTTTGTTGTTAGAATGTAAACTTTTACAAATATGAGGGTCCTTGCATGGCAATATGATGAGTTCTATTGAATACTCTCTTTTGAGCTCCCCCACCCCCCACAGACACACAAATCTTTCCATCCAGAGTCCCTTCCTTTTTTTTTCCCAATTTCTATGTTGCCCGGTTTTCCTATTAGTAAACTTGTGCGTAATTTTTTTTGAGTGATTGTTGGTGCTTACAATATCTATCTTCTATTGCAGCAACTGCTGGCTCAAACAGGGCTGCCTCTAGTAGTACGACCTTGAACACCAGGAAACTTGATGAAGATACTGAGAATCTGGCTCGTAAGTTAAAGCAACACCTTTTACAACTTAATTAGAAATGTGTGTACGAGCATACATATTTATGTTGTGTTCTTTTGGTTGAAGTCATGCTTGCTTATAATTGTTCTTTGGTGTTAACTTTGATCTCCTCTACATTATTTTGATGGTATTATGTTAACTACTTCTGATGTTTCAAACACATACTTCCATCATTGAATGTGTATGCAAGATTTTGAAATTTCTTTGAACTTCATTATAATGAGAAGAAGATGCCTTCTTAAGGTCTGTGAATCTAAATGTTTTGGGAACACATCTACCCTGTCAAATGAAAATCATCCTTAATATTCTCTCTGCATCTCTACTGCTTTATTCATAAACACATTACGCAGTCTGCTCTATTCGTTCCCGCTAGAAATCGTTTTATTCAACATCCATAATTCTTATGCATGTGATGTCACGTTGCTGGAGATAGTGGTTAATAACTTTATTTCATTTGTGTTCTCGCTCTTCTCTTTTATATGTTCTCTTTCTTCCGTTCTGATAGATCTCCTGCTATTTAATGATCTAATTTTGTTATTTGAGCTGTGTTTGAGTTCTGTATCTGTTTCTACTCGTTTATGTATGCATTTCATCCTCAGCAAACAATATAGTAATATTTTTTACCACAACTAACTCATTCTTCCGTATGACATTTTCTGTTTGAAATTTTTCATTTTTTACCTTGTTGTCAGATCAAAAAGTACCGACTGAGCTGAAGAAAGCCATCATGCAAGCTCGACAAGATAAGAAGCTGACTCAGTCTCAACTTGCTCAGGTATACCATTTTTCTGTCTCCCTGCTCCCCTCCTGCCACCCAAAGACTTAAGAGAGGGGGGTGGGGGGTTGAACAGATTGAGAGTACCAGATGACTGATTCGATAATCTGTGAAAATGGTTCTGATATTCCTTGTTGTTTTGCAGCTGATAAATGAGAAGCCTCAAATCATCCAGGAGTACGAGTCAGGAAAGGCAATTCCAAATCAACAAATCATCTCTAAACTGGAGAGAGCTCTTGGTGCCAAACTTAGAGGAAAGAAATGAAGAGCCTCTTGGCTTCTCAAATCTCTATTCCAGTTCTAACTGTAGTTATGTACATGGACAACTTTTTCTGTTAGCCCTCTTTCTATAGCCACTATGGGTGCTTGTGCCTTTGTATGGATCGATGGTTCTGGATTTCTTGGCTACATGGGTGTTATTTCTGTGGAAAAATAAGACGTTTATGCTTGTGCAAGGGATGTTATCTTGTGCTTCCCGTTTTCTTGAGAAAAAAGTTCTCAGTCTCTTGAAGCATGACATCCCCGTCATTCTTCAGATCAGCACTTGAGATATAATGGAAGACATAATTGGCATATGGGAATATGTCAAGTATATCCATTTGCTTTGTGGAATATAATTTGATGCTACAATTCTATACTAATGGAGATGTTACCTCTTCTATATAAAAATAAT</genome_strand>
        <mrna_strand>AAGAAGGCACCGACCGCCGCCGCACGCAAGGATGAGAAAGCTGTCAACGCTGCCCGTCGCTCCGGTGCTGAGATCGAAACTATCAGAAAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTGCTGGCTCAAACAGGGCTGCCTCTAGTAGTACGACCTTGAACACCAGGAAACTTGATGAAGATACTGAGAATCTGGCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAAGTACCGACTGAGCTGAAGAAAGCCATCATGCAAGCTCGACAAGATAAGAAGCTGACTCAGTCTCAACTTGCTCAG.................................................................................................................................................CTGATAAATGAGAAGCCTCAAATCATCCAGGAGTACGAGTCAGGAAAGGCAATTCCAAATCAACAAATCATCTCTAAACTGGAGAGAGCTCTTGGTGCCAAACTTAGAGGAAAGAAATGAAGAGCCTCTTGGCTTCTCAAATCTCTATTCCAGTTCTAACTGTAGTTATGTACATGGACAACTTTTTCTGTTAGCCCTCTTTCTATAGCCACTATGGGTGCTTGTGCCTTTGTATGGATCGATGGTTCTGGATTTCTTGGCTACATGGGTGTTATTTCTGTGGAAAAATAAGACGTTTATGCTTGTGCAAGGGATGTTATCTTGTGCTTCCCGTTTTCTTGAGAAAAAAGTTCTCAGTCTCTTGAAGCATGACATCCCCGTCATTCTTCAGATCAGCACTTGAGATATAATGGAAGACATAATTGGCATATGGGAATATGTCAAGTATATCCATTTGCTTTGTGGAATATAATTGGATGCTACAATTCTATACTTTCCGAGATGTGATCTCTTCTATATAAAAATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E378820" ref_strand="+" ref_description="SGN-E378820 [TUS-1-I5]">
      <seq>gcaagagagagatttttcgagcaaagaaaaaaaaaatatgagtggaggattatcacaagactgggagccggtggtgatccggaagaaggcaccgaccgccgccgcacgcaaggatgagaaagctgtcaacgctgcccgtcgctccggtgctgagatcgaaactatcagaaaatcaactgctggctcaaacagggctgcctctagtagtacgaccttgaacaccaggaaacttgatgaagatactgagaatctggctcatcaaaaagtaccgactgagctgaagaaagccatcatgcaagctcgacaagataagaagctgactcagtctcaacttgctcagctgataaatgagaagcctcaaatcatccaggagtacgagtcaggaaaggcaattccaaatcaacaaatcatctctaaactggagagagctcttggtgccaaacttagaggaaagaaatgaagagcctcttggcttctcaaatctctattccagttctaactgtagttatgtacatggacaactttttctgttagccctctttctatagccactatgggtgcttgtgcctttgtatggatcgatggttctggatttcttggctacatgggtggtatttctgtggaaaaataagacgtttatgcttgtgncagggatgttatcttgtgcttcccgttttctgagaaaaagttctcagtctcttgaagcatgacatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="77959" stop="74715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77659" g_stop="77487" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77486" i_stop="76415" i_length="1072">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76414" g_stop="76331" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="257" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76330" i_stop="75621" i_length="710">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75620" g_stop="75538" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="340" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75537" i_stop="75393" i_length="145">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75392" g_stop="75015" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="716" r_length="376" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E378820" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77659" e_stop="77487"/>
          <exon e_start="76414" e_stop="76331"/>
          <exon e_start="75620" e_stop="75538"/>
          <exon e_start="75392" e_stop="75015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAGAGAGATTTTTCGAGCAAAGAAAAAAAAAATATGAGTGGAGGATTATCACAAGACTGGGAGCCGGTGGTGATCCGGAAGAAGGCACCGACCGCCGCCGCACGCAAGGATGAGAAAGCTGTCAACGCTGCCCGTCGCTCCGGTGCTGAGATCGAAACTATCAGAAAATGTTCGTATTCTCGTCGCTGCTTCGTTTTTTTCATCTCTACAAAGCTCATATATATGATGATGTTCTAACTATAAACGTTAGCTTAATCATTTCTTCGATTGATCGTATAATCTGTTAATTTTATTTCGATAGAGATTTTCAGCTCGATTATTGTTGCTGGCTCTTGTATTGCTTAATTTTCTTATTTCTATATGCAGGTCCGATTATGCTAAGTCTTCAGCTAGGGTTTTCATTTTTTATTTTTTTTTTGGTTAGGATTGTTTGATTGATTGATGTACATGCCTATTTTAAGCTATTTCAAGTATGTACGTTGTTTAGTTGACATGTTTCTTGGTATATGGATAGCTTAAGGACTGGTGTATTATCTCTGCTGTGGTGTAGGGTTGCTTATGAAGACCAAACTTGTTGATTTTCATGAGAATCAGAGCTTCCGGTTGCTGGAAATAACTGTTTTCTGCTTATTTTGTGTAGATTGAAGTCTTATATCATCCTTCCCGTGCCGGTCTAATTTCCATATTCTTGCGTACACATGTAACTAAGAAAGTTGAGTAGAAGTATAATCCTTAAACGTGTCTTCCTATCCTTTCATACTAGAATTTAAATAATTGTTGTATTGCATCATGCTACCTTCTTTCATTTGAAACTCGAAGTTTCTTTCAATCTACATTGATTCTGGAGATCTATAGTTGAATCTGGTTACGAGAAACCGTAAGGTGTGAATGAAAATGAATTCCCTATTTGTAGAGATGGTATATTTGATGGCACATATCTAACATTTCTTGATTTTGATATACATTTTTCCAGTGCGTTGCAGTTACTTTAGAATATATTCTTTGTTGTTAGAATGTAAACTTTTACAAATATGAGGGTCCTTGCATGGCAATATGATGAGTTCTATTGAATACTCTCTTTTGAGCTCCCCCACCCCCCACAGACACACAAATCTTTCCATCCAGAGTCCCTTCCTTTTTTTTTCCCAATTTCTATGTTGCCCGGTTTTCCTATTAGTAAACTTGTGCGTAATTTTTTTTGAGTGATTGTTGGTGCTTACAATATCTATCTTCTATTGCAGCAACTGCTGGCTCAAACAGGGCTGCCTCTAGTAGTACGACCTTGAACACCAGGAAACTTGATGAAGATACTGAGAATCTGGCTCGTAAGTTAAAGCAACACCTTTTACAACTTAATTAGAAATGTGTGTACGAGCATACATATTTATGTTGTGTTCTTTTGGTTGAAGTCATGCTTGCTTATAATTGTTCTTTGGTGTTAACTTTGATCTCCTCTACATTATTTTGATGGTATTATGTTAACTACTTCTGATGTTTCAAACACATACTTCCATCATTGAATGTGTATGCAAGATTTTGAAATTTCTTTGAACTTCATTATAATGAGAAGAAGATGCCTTCTTAAGGTCTGTGAATCTAAATGTTTTGGGAACACATCTACCCTGTCAAATGAAAATCATCCTTAATATTCTCTCTGCATCTCTACTGCTTTATTCATAAACACATTACGCAGTCTGCTCTATTCGTTCCCGCTAGAAATCGTTTTATTCAACATCCATAATTCTTATGCATGTGATGTCACGTTGCTGGAGATAGTGGTTAATAACTTTATTTCATTTGTGTTCTCGCTCTTCTCTTTTATATGTTCTCTTTCTTCCGTTCTGATAGATCTCCTGCTATTTAATGATCTAATTTTGTTATTTGAGCTGTGTTTGAGTTCTGTATCTGTTTCTACTCGTTTATGTATGCATTTCATCCTCAGCAAACAATATAGTAATATTTTTTACCACAACTAACTCATTCTTCCGTATGACATTTTCTGTTTGAAATTTTTCATTTTTTACCTTGTTGTCAGATCAAAAAGTACCGACTGAGCTGAAGAAAGCCATCATGCAAGCTCGACAAGATAAGAAGCTGACTCAGTCTCAACTTGCTCAGGTATACCATTTTTCTGTCTCCCTGCTCCCCTCCTGCCACCCAAAGACTTAAGAGAGGGGGGTGGGGGGTTGAACAGATTGAGAGTACCAGATGACTGATTCGATAATCTGTGAAAATGGTTCTGATATTCCTTGTTGTTTTGCAGCTGATAAATGAGAAGCCTCAAATCATCCAGGAGTACGAGTCAGGAAAGGCAATTCCAAATCAACAAATCATCTCTAAACTGGAGAGAGCTCTTGGTGCCAAACTTAGAGGAAAGAAATGAAGAGCCTCTTGGCTTCTCAAATCTCTATTCCAGTTCTAACTGTAGTTATGTACATGGACAACTTTTTCTGTTAGCCCTCTTTCTATAGCCACTATGGGTGCTTGTGCCTTTGTATGGATCGATGGTTCTGGATTTCTTGGCTACATGGGTGTTATTTCTGTGGAAAAATAAGACGTTTATGCTTGTGCAAGGGATGTTATCTTGTGCTTCCCGTTTTCTTGAGAAAAAAGTTCTCAGTCTCTTGAAGCATGACATCCC</genome_strand>
        <mrna_strand>GCAAGAGAGAGATTTTTCGAGCAAAGAAAAAAAAAATATGAGTGGAGGATTATCACAAGACTGGGAGCCGGTGGTGATCCGGAAGAAGGCACCGACCGCCGCCGCACGCAAGGATGAGAAAGCTGTCAACGCTGCCCGTCGCTCCGGTGCTGAGATCGAAACTATCAGAAAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTGCTGGCTCAAACAGGGCTGCCTCTAGTAGTACGACCTTGAACACCAGGAAACTTGATGAAGATACTGAGAATCTGGCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAAGTACCGACTGAGCTGAAGAAAGCCATCATGCAAGCTCGACAAGATAAGAAGCTGACTCAGTCTCAACTTGCTCAG.................................................................................................................................................CTGATAAATGAGAAGCCTCAAATCATCCAGGAGTACGAGTCAGGAAAGGCAATTCCAAATCAACAAATCATCTCTAAACTGGAGAGAGCTCTTGGTGCCAAACTTAGAGGAAAGAAATGAAGAGCCTCTTGGCTTCTCAAATCTCTATTCCAGTTCTAACTGTAGTTATGTACATGGACAACTTTTTCTGTTAGCCCTCTTTCTATAGCCACTATGGGTGCTTGTGCCTTTGTATGGATCGATGGTTCTGGATTTCTTGGCTACATGGGTGGTATTTCTGTGGAAAAATAAGACGTTTATGCTTGTGNCAGGGATGTTATCTTGTGCTTCCCGTTTTC-TGAG-AAAAAGTTCTCAGTCTCTTGAAGCATGACATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E734382" ref_strand="+" ref_description="SGN-E734382 [LB12CB02]">
      <seq>aaagcgaagagaagcaagagagagatttttcgagcaaagaaaaaaaaaatatgagtggaggattatcacaagactgggagccggtggtgatccggaagaaggcaccgaccgccgccgcacgcaaggatgagaaagctgtcaacgctgcccgtcgctccggtgctgagatcgaaactatcagaaaatcaactgctggctcaaacagggctgcctctagtagtacgaccttgaacaccaggaaacttgatgaagatactgagaatctggctcatcaaaaagtaccgactgagctgaagaaagccatcatgcaagctcgacaagataagaagctgactcagtctcaacttgctcagctgataaatgagaagcctcaaatcatccaggagtacgagtcaggaaaggccattccaaatcaacaaatcatctctaaactggagagagctcttggtgccaaacttagaggaaagaaatgaagagcctcttggcttctcaaatctctattccagttctaactgtagttatgtacatggacaactttttctgttagccctctttctatagccactatggtgcttgtgcctttgtagggatcgatggttctggatttcttggctacttgggtgttatttctgtggaaaaataagacgtttatgcttgtgcaagggatgttatcttgtgcttcccgttttcttgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="77972" stop="74749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77672" g_stop="77487" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77486" i_stop="76415" i_length="1072">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76414" g_stop="76331" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="270" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76330" i_stop="75621" i_length="710">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75620" g_stop="75538" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="353" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75537" i_stop="75393" i_length="145">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75392" g_stop="75049" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="696" r_length="343" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E734382" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77672" e_stop="77487"/>
          <exon e_start="76414" e_stop="76331"/>
          <exon e_start="75620" e_stop="75538"/>
          <exon e_start="75392" e_stop="75049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCGAAGAGAAGCAAGAGAGAGATTTTTCGAGCAAAGAAAAAAAAAATATGAGTGGAGGATTATCACAAGACTGGGAGCCGGTGGTGATCCGGAAGAAGGCACCGACCGCCGCCGCACGCAAGGATGAGAAAGCTGTCAACGCTGCCCGTCGCTCCGGTGCTGAGATCGAAACTATCAGAAAATGTTCGTATTCTCGTCGCTGCTTCGTTTTTTTCATCTCTACAAAGCTCATATATATGATGATGTTCTAACTATAAACGTTAGCTTAATCATTTCTTCGATTGATCGTATAATCTGTTAATTTTATTTCGATAGAGATTTTCAGCTCGATTATTGTTGCTGGCTCTTGTATTGCTTAATTTTCTTATTTCTATATGCAGGTCCGATTATGCTAAGTCTTCAGCTAGGGTTTTCATTTTTTATTTTTTTTTTGGTTAGGATTGTTTGATTGATTGATGTACATGCCTATTTTAAGCTATTTCAAGTATGTACGTTGTTTAGTTGACATGTTTCTTGGTATATGGATAGCTTAAGGACTGGTGTATTATCTCTGCTGTGGTGTAGGGTTGCTTATGAAGACCAAACTTGTTGATTTTCATGAGAATCAGAGCTTCCGGTTGCTGGAAATAACTGTTTTCTGCTTATTTTGTGTAGATTGAAGTCTTATATCATCCTTCCCGTGCCGGTCTAATTTCCATATTCTTGCGTACACATGTAACTAAGAAAGTTGAGTAGAAGTATAATCCTTAAACGTGTCTTCCTATCCTTTCATACTAGAATTTAAATAATTGTTGTATTGCATCATGCTACCTTCTTTCATTTGAAACTCGAAGTTTCTTTCAATCTACATTGATTCTGGAGATCTATAGTTGAATCTGGTTACGAGAAACCGTAAGGTGTGAATGAAAATGAATTCCCTATTTGTAGAGATGGTATATTTGATGGCACATATCTAACATTTCTTGATTTTGATATACATTTTTCCAGTGCGTTGCAGTTACTTTAGAATATATTCTTTGTTGTTAGAATGTAAACTTTTACAAATATGAGGGTCCTTGCATGGCAATATGATGAGTTCTATTGAATACTCTCTTTTGAGCTCCCCCACCCCCCACAGACACACAAATCTTTCCATCCAGAGTCCCTTCCTTTTTTTTTCCCAATTTCTATGTTGCCCGGTTTTCCTATTAGTAAACTTGTGCGTAATTTTTTTTGAGTGATTGTTGGTGCTTACAATATCTATCTTCTATTGCAGCAACTGCTGGCTCAAACAGGGCTGCCTCTAGTAGTACGACCTTGAACACCAGGAAACTTGATGAAGATACTGAGAATCTGGCTCGTAAGTTAAAGCAACACCTTTTACAACTTAATTAGAAATGTGTGTACGAGCATACATATTTATGTTGTGTTCTTTTGGTTGAAGTCATGCTTGCTTATAATTGTTCTTTGGTGTTAACTTTGATCTCCTCTACATTATTTTGATGGTATTATGTTAACTACTTCTGATGTTTCAAACACATACTTCCATCATTGAATGTGTATGCAAGATTTTGAAATTTCTTTGAACTTCATTATAATGAGAAGAAGATGCCTTCTTAAGGTCTGTGAATCTAAATGTTTTGGGAACACATCTACCCTGTCAAATGAAAATCATCCTTAATATTCTCTCTGCATCTCTACTGCTTTATTCATAAACACATTACGCAGTCTGCTCTATTCGTTCCCGCTAGAAATCGTTTTATTCAACATCCATAATTCTTATGCATGTGATGTCACGTTGCTGGAGATAGTGGTTAATAACTTTATTTCATTTGTGTTCTCGCTCTTCTCTTTTATATGTTCTCTTTCTTCCGTTCTGATAGATCTCCTGCTATTTAATGATCTAATTTTGTTATTTGAGCTGTGTTTGAGTTCTGTATCTGTTTCTACTCGTTTATGTATGCATTTCATCCTCAGCAAACAATATAGTAATATTTTTTACCACAACTAACTCATTCTTCCGTATGACATTTTCTGTTTGAAATTTTTCATTTTTTACCTTGTTGTCAGATCAAAAAGTACCGACTGAGCTGAAGAAAGCCATCATGCAAGCTCGACAAGATAAGAAGCTGACTCAGTCTCAACTTGCTCAGGTATACCATTTTTCTGTCTCCCTGCTCCCCTCCTGCCACCCAAAGACTTAAGAGAGGGGGGTGGGGGGTTGAACAGATTGAGAGTACCAGATGACTGATTCGATAATCTGTGAAAATGGTTCTGATATTCCTTGTTGTTTTGCAGCTGATAAATGAGAAGCCTCAAATCATCCAGGAGTACGAGTCAGGAAAGGCAATTCCAAATCAACAAATCATCTCTAAACTGGAGAGAGCTCTTGGTGCCAAACTTAGAGGAAAGAAATGAAGAGCCTCTTGGCTTCTCAAATCTCTATTCCAGTTCTAACTGTAGTTATGTACATGGACAACTTTTTCTGTTAGCCCTCTTTCTATAGCCACTATGGGTGCTTGTGCCTTTGTATGGATCGATGGTTCTGGATTTCTTGGCTACATGGGTGTTATTTCTGTGGAAAAATAAGACGTTTATGCTTGTGCAAGGGATGTTATCTTGTGCTTCCCGTTTTCTTGAGA</genome_strand>
        <mrna_strand>AAAGCGAAGAGAAGCAAGAGAGAGATTTTTCGAGCAAAGAAAAAAAAAATATGAGTGGAGGATTATCACAAGACTGGGAGCCGGTGGTGATCCGGAAGAAGGCACCGACCGCCGCCGCACGCAAGGATGAGAAAGCTGTCAACGCTGCCCGTCGCTCCGGTGCTGAGATCGAAACTATCAGAAAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTGCTGGCTCAAACAGGGCTGCCTCTAGTAGTACGACCTTGAACACCAGGAAACTTGATGAAGATACTGAGAATCTGGCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAAGTACCGACTGAGCTGAAGAAAGCCATCATGCAAGCTCGACAAGATAAGAAGCTGACTCAGTCTCAACTTGCTCAG.................................................................................................................................................CTGATAAATGAGAAGCCTCAAATCATCCAGGAGTACGAGTCAGGAAAGGCCATTCCAAATCAACAAATCATCTCTAAACTGGAGAGAGCTCTTGGTGCCAAACTTAGAGGAAAGAAATGAAGAGCCTCTTGGCTTCTCAAATCTCTATTCCAGTTCTAACTGTAGTTATGTACATGGACAACTTTTTCTGTTAGCCCTCTTTCTATAGCCACTAT-GGTGCTTGTGCCTTTGTAGGGATCGATGGTTCTGGATTTCTTGGCTACTTGGGTGTTATTTCTGTGGAAAAATAAGACGTTTATGCTTGTGCAAGGGATGTTATCTTGTGCTTCCCGTTTTCTTGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E451183" ref_strand="+" ref_description="SGN-E451183 [cSTS-12-A17]">
      <seq>caaaaaatgagtggaggattatcacaagactgggagccggtggtgatccggaagaaggcgccgaccgccgccgcacgcaaggatgagaaagctgttaacgctgcccgtcgctccggtgctgagatcgaaaccgtcagaaaatctactgctggcataaacagggctgcctctagtagtacgaccttgaacaccaggaaacttgatgaagatactgagaatctggcccatcaaaaagtaccaactgaactaaagaaagccatcatgcaagctcgacaagataagaagctgactcagtctcaacttgctcagctgataaatgagaagcctcaaatcatccaggagtatgagtcaggaaaggcaattccaaatcaacaaatcatctctaaactggagagagctcttggtgcaaaacttagaggaaagaaatgaagagcctcttggcttctcaaatctctattccagttctaactgtggtcatgtacatggacaactttttctgttaaccctctttctataaccactgtggtgctcatgcctgtatatggattgatgattgtgaatttcttggctaaatgggtgttacttctgtggaaaaataagacgtttatgcttgtgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="77928" stop="74783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77628" g_stop="77487" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77486" i_stop="76415" i_length="1072">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76414" g_stop="76331" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="226" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76330" i_stop="75621" i_length="710">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75620" g_stop="75538" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="309" r_length="83" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75537" i_stop="75393" i_length="145">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75392" g_stop="75075" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="626" r_length="317" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E451183" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77628" e_stop="77487"/>
          <exon e_start="76414" e_stop="76331"/>
          <exon e_start="75620" e_stop="75538"/>
          <exon e_start="75392" e_stop="75075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATATGAGTGGAGGATTATCACAAGACTGGGAGCCGGTGGTGATCCGGAAGAAGGCACCGACCGCCGCCGCACGCAAGGATGAGAAAGCTGTCAACGCTGCCCGTCGCTCCGGTGCTGAGATCGAAACTATCAGAAAATGTTCGTATTCTCGTCGCTGCTTCGTTTTTTTCATCTCTACAAAGCTCATATATATGATGATGTTCTAACTATAAACGTTAGCTTAATCATTTCTTCGATTGATCGTATAATCTGTTAATTTTATTTCGATAGAGATTTTCAGCTCGATTATTGTTGCTGGCTCTTGTATTGCTTAATTTTCTTATTTCTATATGCAGGTCCGATTATGCTAAGTCTTCAGCTAGGGTTTTCATTTTTTATTTTTTTTTTGGTTAGGATTGTTTGATTGATTGATGTACATGCCTATTTTAAGCTATTTCAAGTATGTACGTTGTTTAGTTGACATGTTTCTTGGTATATGGATAGCTTAAGGACTGGTGTATTATCTCTGCTGTGGTGTAGGGTTGCTTATGAAGACCAAACTTGTTGATTTTCATGAGAATCAGAGCTTCCGGTTGCTGGAAATAACTGTTTTCTGCTTATTTTGTGTAGATTGAAGTCTTATATCATCCTTCCCGTGCCGGTCTAATTTCCATATTCTTGCGTACACATGTAACTAAGAAAGTTGAGTAGAAGTATAATCCTTAAACGTGTCTTCCTATCCTTTCATACTAGAATTTAAATAATTGTTGTATTGCATCATGCTACCTTCTTTCATTTGAAACTCGAAGTTTCTTTCAATCTACATTGATTCTGGAGATCTATAGTTGAATCTGGTTACGAGAAACCGTAAGGTGTGAATGAAAATGAATTCCCTATTTGTAGAGATGGTATATTTGATGGCACATATCTAACATTTCTTGATTTTGATATACATTTTTCCAGTGCGTTGCAGTTACTTTAGAATATATTCTTTGTTGTTAGAATGTAAACTTTTACAAATATGAGGGTCCTTGCATGGCAATATGATGAGTTCTATTGAATACTCTCTTTTGAGCTCCCCCACCCCCCACAGACACACAAATCTTTCCATCCAGAGTCCCTTCCTTTTTTTTTCCCAATTTCTATGTTGCCCGGTTTTCCTATTAGTAAACTTGTGCGTAATTTTTTTTGAGTGATTGTTGGTGCTTACAATATCTATCTTCTATTGCAGCAACTGCTGGCTCAAACAGGGCTGCCTCTAGTAGTACGACCTTGAACACCAGGAAACTTGATGAAGATACTGAGAATCTGGCTCGTAAGTTAAAGCAACACCTTTTACAACTTAATTAGAAATGTGTGTACGAGCATACATATTTATGTTGTGTTCTTTTGGTTGAAGTCATGCTTGCTTATAATTGTTCTTTGGTGTTAACTTTGATCTCCTCTACATTATTTTGATGGTATTATGTTAACTACTTCTGATGTTTCAAACACATACTTCCATCATTGAATGTGTATGCAAGATTTTGAAATTTCTTTGAACTTCATTATAATGAGAAGAAGATGCCTTCTTAAGGTCTGTGAATCTAAATGTTTTGGGAACACATCTACCCTGTCAAATGAAAATCATCCTTAATATTCTCTCTGCATCTCTACTGCTTTATTCATAAACACATTACGCAGTCTGCTCTATTCGTTCCCGCTAGAAATCGTTTTATTCAACATCCATAATTCTTATGCATGTGATGTCACGTTGCTGGAGATAGTGGTTAATAACTTTATTTCATTTGTGTTCTCGCTCTTCTCTTTTATATGTTCTCTTTCTTCCGTTCTGATAGATCTCCTGCTATTTAATGATCTAATTTTGTTATTTGAGCTGTGTTTGAGTTCTGTATCTGTTTCTACTCGTTTATGTATGCATTTCATCCTCAGCAAACAATATAGTAATATTTTTTACCACAACTAACTCATTCTTCCGTATGACATTTTCTGTTTGAAATTTTTCATTTTTTACCTTGTTGTCAGATCAAAAAGTACCGACTGAGCTGAAGAAAGCCATCATGCAAGCTCGACAAGATAAGAAGCTGACTCAGTCTCAACTTGCTCAGGTATACCATTTTTCTGTCTCCCTGCTCCCCTCCTGCCACCCAAAGACTTAAGAGAGGGGGGTGGGGGGTTGAACAGATTGAGAGTACCAGATGACTGATTCGATAATCTGTGAAAATGGTTCTGATATTCCTTGTTGTTTTGCAGCTGATAAATGAGAAGCCTCAAATCATCCAGGAGTACGAGTCAGGAAAGGCAATTCCAAATCAACAAATCATCTCTAAACTGGAGAGAGCTCTTGGTGCCAAACTTAGAGGAAAGAAATGAAGAGCCTCTTGGCTTCTCAAATCTCTATTCCAGTTCTAACTGTAGTTATGTACATGGACAACTTTTTCTGTTAGCCCTCTTTCTATAGCCACTATGGGTGCTTGTGCCTTTGTATGGATCGATGGTTCTGGATTTCTTGGCTACATGGGTGTTATTTCTGTGGAAAAATAAGACGTTTATGCTTGTGCAAGGGATGTT</genome_strand>
        <mrna_strand>CAAAAAATGAGTGGAGGATTATCACAAGACTGGGAGCCGGTGGTGATCCGGAAGAAGGCGCCGACCGCCGCCGCACGCAAGGATGAGAAAGCTGTTAACGCTGCCCGTCGCTCCGGTGCTGAGATCGAAACCGTCAGAAAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCTGGCATAAACAGGGCTGCCTCTAGTAGTACGACCTTGAACACCAGGAAACTTGATGAAGATACTGAGAATCTGGCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAAGTACCAACTGAACTAAAGAAAGCCATCATGCAAGCTCGACAAGATAAGAAGCTGACTCAGTCTCAACTTGCTCAG.................................................................................................................................................CTGATAAATGAGAAGCCTCAAATCATCCAGGAGTATGAGTCAGGAAAGGCAATTCCAAATCAACAAATCATCTCTAAACTGGAGAGAGCTCTTGGTGCAAAACTTAGAGGAAAGAAATGAAGAGCCTCTTGGCTTCTCAAATCTCTATTCCAGTTCTAACTGTGGTCATGTACATGGACAACTTTTTCTGTTAACCCTCTTTCTATAACCACTGT-GGTGCTCATGCCTGTATATGGATTGATGATTGTGAATTTCTTGGCTAAATGGGTGTTACTTCTGTGGAAAAATAAGACGTTTATGCTTGTGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E455931" ref_strand="+" ref_description="SGN-E455931 [cSTS-28-C13]">
      <seq>caaaaaagagtggaggattatcacaagactgggagccggtggtgatccggaagaaggcgccgaccgccgccgcacgcaaggatgagaaagctgttaacgctgcccgtcgctccggtgctgagatcgaaaccgtcagaaaatctactgctggcataaacagggctgcctctagtagtacgaccttgaacaccaggaaacttgatgaagatactgagaatctggcccatcaaaaagtaccaactgaactaaagaaagccatcatgcaagctcgacaagataagaagctgactcagtctcaacttgctcagctgataaatgagaagcctcaaatcatccaggagtatgagtcaggaaaggcaattccaaatcaacaaatcatctctaaactggagagagctcttggtgcaaaacttagaggaaagaaatgaagagcctcttggcttctcaaatctctattccagttctaactgtggtcatgtacatggacaactttttctgttaaccctctttctataaccactgtggtgctcatgcctgtatatggattgatgattgtgaatttcttggctaaatgggtgttacttctgtggaaaaataagacgtttatgcttgtgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="77928" stop="74783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77627" g_stop="77487" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77486" i_stop="76415" i_length="1072">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76414" g_stop="76331" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="225" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76330" i_stop="75621" i_length="710">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75620" g_stop="75538" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="308" r_length="83" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75537" i_stop="75393" i_length="145">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75392" g_stop="75075" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="625" r_length="317" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E455931" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77627" e_stop="77487"/>
          <exon e_start="76414" e_stop="76331"/>
          <exon e_start="75620" e_stop="75538"/>
          <exon e_start="75392" e_stop="75075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATATGAGTGGAGGATTATCACAAGACTGGGAGCCGGTGGTGATCCGGAAGAAGGCACCGACCGCCGCCGCACGCAAGGATGAGAAAGCTGTCAACGCTGCCCGTCGCTCCGGTGCTGAGATCGAAACTATCAGAAAATGTTCGTATTCTCGTCGCTGCTTCGTTTTTTTCATCTCTACAAAGCTCATATATATGATGATGTTCTAACTATAAACGTTAGCTTAATCATTTCTTCGATTGATCGTATAATCTGTTAATTTTATTTCGATAGAGATTTTCAGCTCGATTATTGTTGCTGGCTCTTGTATTGCTTAATTTTCTTATTTCTATATGCAGGTCCGATTATGCTAAGTCTTCAGCTAGGGTTTTCATTTTTTATTTTTTTTTTGGTTAGGATTGTTTGATTGATTGATGTACATGCCTATTTTAAGCTATTTCAAGTATGTACGTTGTTTAGTTGACATGTTTCTTGGTATATGGATAGCTTAAGGACTGGTGTATTATCTCTGCTGTGGTGTAGGGTTGCTTATGAAGACCAAACTTGTTGATTTTCATGAGAATCAGAGCTTCCGGTTGCTGGAAATAACTGTTTTCTGCTTATTTTGTGTAGATTGAAGTCTTATATCATCCTTCCCGTGCCGGTCTAATTTCCATATTCTTGCGTACACATGTAACTAAGAAAGTTGAGTAGAAGTATAATCCTTAAACGTGTCTTCCTATCCTTTCATACTAGAATTTAAATAATTGTTGTATTGCATCATGCTACCTTCTTTCATTTGAAACTCGAAGTTTCTTTCAATCTACATTGATTCTGGAGATCTATAGTTGAATCTGGTTACGAGAAACCGTAAGGTGTGAATGAAAATGAATTCCCTATTTGTAGAGATGGTATATTTGATGGCACATATCTAACATTTCTTGATTTTGATATACATTTTTCCAGTGCGTTGCAGTTACTTTAGAATATATTCTTTGTTGTTAGAATGTAAACTTTTACAAATATGAGGGTCCTTGCATGGCAATATGATGAGTTCTATTGAATACTCTCTTTTGAGCTCCCCCACCCCCCACAGACACACAAATCTTTCCATCCAGAGTCCCTTCCTTTTTTTTTCCCAATTTCTATGTTGCCCGGTTTTCCTATTAGTAAACTTGTGCGTAATTTTTTTTGAGTGATTGTTGGTGCTTACAATATCTATCTTCTATTGCAGCAACTGCTGGCTCAAACAGGGCTGCCTCTAGTAGTACGACCTTGAACACCAGGAAACTTGATGAAGATACTGAGAATCTGGCTCGTAAGTTAAAGCAACACCTTTTACAACTTAATTAGAAATGTGTGTACGAGCATACATATTTATGTTGTGTTCTTTTGGTTGAAGTCATGCTTGCTTATAATTGTTCTTTGGTGTTAACTTTGATCTCCTCTACATTATTTTGATGGTATTATGTTAACTACTTCTGATGTTTCAAACACATACTTCCATCATTGAATGTGTATGCAAGATTTTGAAATTTCTTTGAACTTCATTATAATGAGAAGAAGATGCCTTCTTAAGGTCTGTGAATCTAAATGTTTTGGGAACACATCTACCCTGTCAAATGAAAATCATCCTTAATATTCTCTCTGCATCTCTACTGCTTTATTCATAAACACATTACGCAGTCTGCTCTATTCGTTCCCGCTAGAAATCGTTTTATTCAACATCCATAATTCTTATGCATGTGATGTCACGTTGCTGGAGATAGTGGTTAATAACTTTATTTCATTTGTGTTCTCGCTCTTCTCTTTTATATGTTCTCTTTCTTCCGTTCTGATAGATCTCCTGCTATTTAATGATCTAATTTTGTTATTTGAGCTGTGTTTGAGTTCTGTATCTGTTTCTACTCGTTTATGTATGCATTTCATCCTCAGCAAACAATATAGTAATATTTTTTACCACAACTAACTCATTCTTCCGTATGACATTTTCTGTTTGAAATTTTTCATTTTTTACCTTGTTGTCAGATCAAAAAGTACCGACTGAGCTGAAGAAAGCCATCATGCAAGCTCGACAAGATAAGAAGCTGACTCAGTCTCAACTTGCTCAGGTATACCATTTTTCTGTCTCCCTGCTCCCCTCCTGCCACCCAAAGACTTAAGAGAGGGGGGTGGGGGGTTGAACAGATTGAGAGTACCAGATGACTGATTCGATAATCTGTGAAAATGGTTCTGATATTCCTTGTTGTTTTGCAGCTGATAAATGAGAAGCCTCAAATCATCCAGGAGTACGAGTCAGGAAAGGCAATTCCAAATCAACAAATCATCTCTAAACTGGAGAGAGCTCTTGGTGCCAAACTTAGAGGAAAGAAATGAAGAGCCTCTTGGCTTCTCAAATCTCTATTCCAGTTCTAACTGTAGTTATGTACATGGACAACTTTTTCTGTTAGCCCTCTTTCTATAGCCACTATGGGTGCTTGTGCCTTTGTATGGATCGATGGTTCTGGATTTCTTGGCTACATGGGTGTTATTTCTGTGGAAAAATAAGACGTTTATGCTTGTGCAAGGGATGTT</genome_strand>
        <mrna_strand>CAAAAAAGAGTGGAGGATTATCACAAGACTGGGAGCCGGTGGTGATCCGGAAGAAGGCGCCGACCGCCGCCGCACGCAAGGATGAGAAAGCTGTTAACGCTGCCCGTCGCTCCGGTGCTGAGATCGAAACCGTCAGAAAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCTGGCATAAACAGGGCTGCCTCTAGTAGTACGACCTTGAACACCAGGAAACTTGATGAAGATACTGAGAATCTGGCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAAGTACCAACTGAACTAAAGAAAGCCATCATGCAAGCTCGACAAGATAAGAAGCTGACTCAGTCTCAACTTGCTCAG.................................................................................................................................................CTGATAAATGAGAAGCCTCAAATCATCCAGGAGTATGAGTCAGGAAAGGCAATTCCAAATCAACAAATCATCTCTAAACTGGAGAGAGCTCTTGGTGCAAAACTTAGAGGAAAGAAATGAAGAGCCTCTTGGCTTCTCAAATCTCTATTCCAGTTCTAACTGTGGTCATGTACATGGACAACTTTTTCTGTTAACCCTCTTTCTATAACCACTGT-GGTGCTCATGCCTGTATATGGATTGATGATTGTGAATTTCTTGGCTAAATGGGTGTTACTTCTGTGGAAAAATAAGACGTTTATGCTTGTGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E356371" ref_strand="+" ref_description="SGN-E356371 [cTOS-20-F7]">
      <seq>aacaccaggaaacttgatgaagatactgagaatctggctcatcaaaaagtaccgactgagctgaagaaagccatcatgcaagctcgacaagataagaagctgactcagtctcaacttgctcagctgataaatgagaagcctcaaatcatccaggagtacgagtcaggaaaggcaattccaaatcaacaaatcatctctaaactggagagagctcttggtgccaaacttagaggaaagaaatgaagagcctcttggcttctcaaatctctattccagttctaactgtagttatgtacatggacaactttttctgttagccctctttctatagccactatgggtgcttgtgcctttgtatggatcgatgggtctggatttcttggctacatggggtgtatttctgtggaaaaattagaacgttatgcttgtgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="76670" stop="74783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76370" g_stop="76331" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76330" i_stop="75621" i_length="710">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75620" g_stop="75538" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="123" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75537" i_stop="75393" i_length="145">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75392" g_stop="75075" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="441" r_length="318" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E356371" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76370" e_stop="76331"/>
          <exon e_start="75620" e_stop="75538"/>
          <exon e_start="75392" e_stop="75075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACCAGGAAACTTGATGAAGATACTGAGAATCTGGCTCGTAAGTTAAAGCAACACCTTTTACAACTTAATTAGAAATGTGTGTACGAGCATACATATTTATGTTGTGTTCTTTTGGTTGAAGTCATGCTTGCTTATAATTGTTCTTTGGTGTTAACTTTGATCTCCTCTACATTATTTTGATGGTATTATGTTAACTACTTCTGATGTTTCAAACACATACTTCCATCATTGAATGTGTATGCAAGATTTTGAAATTTCTTTGAACTTCATTATAATGAGAAGAAGATGCCTTCTTAAGGTCTGTGAATCTAAATGTTTTGGGAACACATCTACCCTGTCAAATGAAAATCATCCTTAATATTCTCTCTGCATCTCTACTGCTTTATTCATAAACACATTACGCAGTCTGCTCTATTCGTTCCCGCTAGAAATCGTTTTATTCAACATCCATAATTCTTATGCATGTGATGTCACGTTGCTGGAGATAGTGGTTAATAACTTTATTTCATTTGTGTTCTCGCTCTTCTCTTTTATATGTTCTCTTTCTTCCGTTCTGATAGATCTCCTGCTATTTAATGATCTAATTTTGTTATTTGAGCTGTGTTTGAGTTCTGTATCTGTTTCTACTCGTTTATGTATGCATTTCATCCTCAGCAAACAATATAGTAATATTTTTTACCACAACTAACTCATTCTTCCGTATGACATTTTCTGTTTGAAATTTTTCATTTTTTACCTTGTTGTCAGATCAAAAAGTACCGACTGAGCTGAAGAAAGCCATCATGCAAGCTCGACAAGATAAGAAGCTGACTCAGTCTCAACTTGCTCAGGTATACCATTTTTCTGTCTCCCTGCTCCCCTCCTGCCACCCAAAGACTTAAGAGAGGGGGGTGGGGGGTTGAACAGATTGAGAGTACCAGATGACTGATTCGATAATCTGTGAAAATGGTTCTGATATTCCTTGTTGTTTTGCAGCTGATAAATGAGAAGCCTCAAATCATCCAGGAGTACGAGTCAGGAAAGGCAATTCCAAATCAACAAATCATCTCTAAACTGGAGAGAGCTCTTGGTGCCAAACTTAGAGGAAAGAAATGAAGAGCCTCTTGGCTTCTCAAATCTCTATTCCAGTTCTAACTGTAGTTATGTACATGGACAACTTTTTCTGTTAGCCCTCTTTCTATAGCCACTATGGGTGCTTGTGCCTTTGTATGGATCGATGGTTCTGGATTTCTTGGCTACATGGGTGTTATTTCTGTGGAAAAATAAGACGTTTATGCTTGTGCAAGGGATGTT</genome_strand>
        <mrna_strand>AACACCAGGAAACTTGATGAAGATACTGAGAATCTGGCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAAGTACCGACTGAGCTGAAGAAAGCCATCATGCAAGCTCGACAAGATAAGAAGCTGACTCAGTCTCAACTTGCTCAG.................................................................................................................................................CTGATAAATGAGAAGCCTCAAATCATCCAGGAGTACGAGTCAGGAAAGGCAATTCCAAATCAACAAATCATCTCTAAACTGGAGAGAGCTCTTGGTGCCAAACTTAGAGGAAAGAAATGAAGAGCCTCTTGGCTTCTCAAATCTCTATTCCAGTTCTAACTGTAGTTATGTACATGGACAACTTTTTCTGTTAGCCCTCTTTCTATAGCCACTATGGGTGCTTGTGCCTTTGTATGGATCGATGGGTCTGGATTTCTTGGCTACATGGGGTGTATTTCTGTGGAAAAATTAGAACGTTATGCTTGTGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E357534" ref_strand="+" ref_description="SGN-E357534 [cTOS-23-J13]">
      <seq>aacaccaggaaacttgatgaagatactgagaatctggctcatcaaaaagtaccgactgagctgaagaaagccatcatgcaagctcgacaagataagaagctgactcagtctcaacttgctcagctgataaatgagaagcctcaaatcatccaggagtacgagtcaggaaaggcaattccaaatcaacaaatcatctctaaactggagagagctcttggtgccaaacttagaggaaagaaatgaagagcctcttggcttctcaaatctctattccagttctaactgtagttatgtacatggacaactttttctgttagccctctttctatagccactatgggtgcttgtgcctttgtatggatcgatggttctggatttcttggctacatgggtgttatttctgtggaaaaataagacgtttatgcttgtgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="76670" stop="74783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76370" g_stop="76331" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76330" i_stop="75621" i_length="710">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75620" g_stop="75538" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="123" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75537" i_stop="75393" i_length="145">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75392" g_stop="75075" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="441" r_length="318" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E357534" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76370" e_stop="76331"/>
          <exon e_start="75620" e_stop="75538"/>
          <exon e_start="75392" e_stop="75075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACCAGGAAACTTGATGAAGATACTGAGAATCTGGCTCGTAAGTTAAAGCAACACCTTTTACAACTTAATTAGAAATGTGTGTACGAGCATACATATTTATGTTGTGTTCTTTTGGTTGAAGTCATGCTTGCTTATAATTGTTCTTTGGTGTTAACTTTGATCTCCTCTACATTATTTTGATGGTATTATGTTAACTACTTCTGATGTTTCAAACACATACTTCCATCATTGAATGTGTATGCAAGATTTTGAAATTTCTTTGAACTTCATTATAATGAGAAGAAGATGCCTTCTTAAGGTCTGTGAATCTAAATGTTTTGGGAACACATCTACCCTGTCAAATGAAAATCATCCTTAATATTCTCTCTGCATCTCTACTGCTTTATTCATAAACACATTACGCAGTCTGCTCTATTCGTTCCCGCTAGAAATCGTTTTATTCAACATCCATAATTCTTATGCATGTGATGTCACGTTGCTGGAGATAGTGGTTAATAACTTTATTTCATTTGTGTTCTCGCTCTTCTCTTTTATATGTTCTCTTTCTTCCGTTCTGATAGATCTCCTGCTATTTAATGATCTAATTTTGTTATTTGAGCTGTGTTTGAGTTCTGTATCTGTTTCTACTCGTTTATGTATGCATTTCATCCTCAGCAAACAATATAGTAATATTTTTTACCACAACTAACTCATTCTTCCGTATGACATTTTCTGTTTGAAATTTTTCATTTTTTACCTTGTTGTCAGATCAAAAAGTACCGACTGAGCTGAAGAAAGCCATCATGCAAGCTCGACAAGATAAGAAGCTGACTCAGTCTCAACTTGCTCAGGTATACCATTTTTCTGTCTCCCTGCTCCCCTCCTGCCACCCAAAGACTTAAGAGAGGGGGGTGGGGGGTTGAACAGATTGAGAGTACCAGATGACTGATTCGATAATCTGTGAAAATGGTTCTGATATTCCTTGTTGTTTTGCAGCTGATAAATGAGAAGCCTCAAATCATCCAGGAGTACGAGTCAGGAAAGGCAATTCCAAATCAACAAATCATCTCTAAACTGGAGAGAGCTCTTGGTGCCAAACTTAGAGGAAAGAAATGAAGAGCCTCTTGGCTTCTCAAATCTCTATTCCAGTTCTAACTGTAGTTATGTACATGGACAACTTTTTCTGTTAGCCCTCTTTCTATAGCCACTATGGGTGCTTGTGCCTTTGTATGGATCGATGGTTCTGGATTTCTTGGCTACATGGGTGTTATTTCTGTGGAAAAATAAGACGTTTATGCTTGTGCAAGGGATGTT</genome_strand>
        <mrna_strand>AACACCAGGAAACTTGATGAAGATACTGAGAATCTGGCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAAGTACCGACTGAGCTGAAGAAAGCCATCATGCAAGCTCGACAAGATAAGAAGCTGACTCAGTCTCAACTTGCTCAG.................................................................................................................................................CTGATAAATGAGAAGCCTCAAATCATCCAGGAGTACGAGTCAGGAAAGGCAATTCCAAATCAACAAATCATCTCTAAACTGGAGAGAGCTCTTGGTGCCAAACTTAGAGGAAAGAAATGAAGAGCCTCTTGGCTTCTCAAATCTCTATTCCAGTTCTAACTGTAGTTATGTACATGGACAACTTTTTCTGTTAGCCCTCTTTCTATAGCCACTATGGGTGCTTGTGCCTTTGTATGGATCGATGGTTCTGGATTTCTTGGCTACATGGGTGTTATTTCTGTGGAAAAATAAGACGTTTATGCTTGTGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E223592" ref_strand="-" ref_description="SGN-E223592 [cLEL-14-A11]">
      <seq>gaatctggctcatcaaaaagtaccgactgagcctaagaaagccatcatgcaagctcgacaagataagaagctgactcagtctcaacttgctcagctgataaatgagaagcctcaaatcatccaggagtacgagtcaggaaaggcaattccaaatcaacaaatcatctctaaactggagagagctcttggtgccaaacttagaggaaagaaatgaagagcctcttggcttctcaaatctctattccagttctaactgtagttatgtacatggacaactttttctgttagccctctttctatagccactatgggtgcttgtgcctttgtatggatcgatggttctggatttcttggctacatgggtgttatttctgtggaaaaataagacgtttatgcttgtgcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="75926" stop="74783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75620" g_stop="75538" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="94" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75537" i_stop="75393" i_length="145">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75392" g_stop="75083" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="404" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="405" polyA_stop="423"/>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E223592" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223592" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75620" e_stop="75538"/>
          <exon e_start="75392" e_stop="75083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAAAAGTACCGACTGAGCTGAAGAAAGCCATCATGCAAGCTCGACAAGATAAGAAGCTGACTCAGTCTCAACTTGCTCAGGTATACCATTTTTCTGTCTCCCTGCTCCCCTCCTGCCACCCAAAGACTTAAGAGAGGGGGGTGGGGGGTTGAACAGATTGAGAGTACCAGATGACTGATTCGATAATCTGTGAAAATGGTTCTGATATTCCTTGTTGTTTTGCAGCTGATAAATGAGAAGCCTCAAATCATCCAGGAGTACGAGTCAGGAAAGGCAATTCCAAATCAACAAATCATCTCTAAACTGGAGAGAGCTCTTGGTGCCAAACTTAGAGGAAAGAAATGAAGAGCCTCTTGGCTTCTCAAATCTCTATTCCAGTTCTAACTGTAGTTATGTACATGGACAACTTTTTCTGTTAGCCCTCTTTCTATAGCCACTATGGGTGCTTGTGCCTTTGTATGGATCGATGGTTCTGGATTTCTTGGCTACATGGGTGTTATTTCTGTGGAAAAATAAGACGTTTATGCTTGTGCAA</genome_strand>
        <mrna_strand>ATCAAAAAGTACCGACTGAGCCTAAGAAAGCCATCATGCAAGCTCGACAAGATAAGAAGCTGACTCAGTCTCAACTTGCTCAG.................................................................................................................................................CTGATAAATGAGAAGCCTCAAATCATCCAGGAGTACGAGTCAGGAAAGGCAATTCCAAATCAACAAATCATCTCTAAACTGGAGAGAGCTCTTGGTGCCAAACTTAGAGGAAAGAAATGAAGAGCCTCTTGGCTTCTCAAATCTCTATTCCAGTTCTAACTGTAGTTATGTACATGGACAACTTTTTCTGTTAGCCCTCTTTCTATAGCCACTATGGGTGCTTGTGCCTTTGTATGGATCGATGGTTCTGGATTTCTTGGCTACATGGGTGTTATTTCTGTGGAAAAATAAGACGTTTATGCTTGTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E223209" ref_strand="-" ref_description="SGN-E223209 [cLEL-14-A11]">
      <seq>gcctcttggcttctcaaatctctattccagttctaactgtagttatgtacatggacaactttttctgttagccctctttctatagccactatgggtgcttgtgcctttgtatggatcgatggttctggatttcttggctacatgggtgttatttctgtggaaaaataagacgtttatgcctgtgcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="75569" stop="74783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75269" g_stop="75083" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="188" polyA_stop="206"/>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E223209" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>187</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223209" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75269" e_stop="75083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCTTGGCTTCTCAAATCTCTATTCCAGTTCTAACTGTAGTTATGTACATGGACAACTTTTTCTGTTAGCCCTCTTTCTATAGCCACTATGGGTGCTTGTGCCTTTGTATGGATCGATGGTTCTGGATTTCTTGGCTACATGGGTGTTATTTCTGTGGAAAAATAAGACGTTTATGCTTGTGCAA</genome_strand>
        <mrna_strand>GCCTCTTGGCTTCTCAAATCTCTATTCCAGTTCTAACTGTAGTTATGTACATGGACAACTTTTTCTGTTAGCCCTCTTTCTATAGCCACTATGGGTGCTTGTGCCTTTGTATGGATCGATGGTTCTGGATTTCTTGGCTACATGGGTGTTATTTCTGTGGAAAAATAAGACGTTTATGCCTGTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E216396" ref_strand="-" ref_description="SGN-E216396 [cLEL-13-M20]">
      <seq>ggcacgagctcagtctcaacttgctcagctgataaatgagaagcctcaaatcatccaggagtacgagtcaggaaaggcaattccaaatcaacaaatcatctctaaactggagagagctcttggtgccaaacttagaggaaagaaatgaagagcctcttggcttctcaaatctctattccagttctaactgtagttatgtacatggacaactttttctgttagccctctttctatagccactatgggtgcttgtgcctttgtatggatcgatggttctggatttcttggctacatgggtgttatttctgtggcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="75865" stop="74800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75565" g_stop="75538" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.786"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75537" i_stop="75393" i_length="145">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75392" g_stop="75106" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="315" r_length="287" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="316" polyA_stop="332"/>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E216396" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216396" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75565" e_stop="75538"/>
          <exon e_start="75392" e_stop="75106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTGACTCAGTCTCAACTTGCTCAGGTATACCATTTTTCTGTCTCCCTGCTCCCCTCCTGCCACCCAAAGACTTAAGAGAGGGGGGTGGGGGGTTGAACAGATTGAGAGTACCAGATGACTGATTCGATAATCTGTGAAAATGGTTCTGATATTCCTTGTTGTTTTGCAGCTGATAAATGAGAAGCCTCAAATCATCCAGGAGTACGAGTCAGGAAAGGCAATTCCAAATCAACAAATCATCTCTAAACTGGAGAGAGCTCTTGGTGCCAAACTTAGAGGAAAGAAATGAAGAGCCTCTTGGCTTCTCAAATCTCTATTCCAGTTCTAACTGTAGTTATGTACATGGACAACTTTTTCTGTTAGCCCTCTTTCTATAGCCACTATGGGTGCTTGTGCCTTTGTATGGATCGATGGTTCTGGATTTCTTGGCTACATGGGTGTTATTTCTGTGGAAAA</genome_strand>
        <mrna_strand>GGCACGAGCTCAGTCTCAACTTGCTCAG.................................................................................................................................................CTGATAAATGAGAAGCCTCAAATCATCCAGGAGTACGAGTCAGGAAAGGCAATTCCAAATCAACAAATCATCTCTAAACTGGAGAGAGCTCTTGGTGCCAAACTTAGAGGAAAGAAATGAAGAGCCTCTTGGCTTCTCAAATCTCTATTCCAGTTCTAACTGTAGTTATGTACATGGACAACTTTTTCTGTTAGCCCTCTTTCTATAGCCACTATGGGTGCTTGTGCCTTTGTATGGATCGATGGTTCTGGATTTCTTGGCTACATGGGTGTTATTTCTGTGGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E409501" ref_strand="+" ref_description="SGN-E409501 [PPI-14-C2]">
      <seq>gaaaggagaagcaagagagagatttttcccgcagaagaaaaacaaaaaatgagtggaggattatcacaagactgggagccggtggtgatccggaagaaggcgccgaccgccgccgcacgcaaggatgagaaagctgttaacgctgcccgtcgctccggtgctgagatcgaaaccgtcagaaaatctactgctggcataaacagggctgcctctagtagtacgaccttgaacaccaggaaacttgatgaagatactgagaatctggcccatcaaaaagtaccaactgaactaaagaaagccatcatgcaagctcgacaagataagaagctgactcagtctcaacttgctcagctgataaatgagaagcctcaaatcatccaggagtatgagtcaggaaaggcaattccaaatcaacaaatcatctctaaactggagagagctcttggtgcaaaacttagaggaaagaaaatgagagcctcttggcttctcaaatctctattccagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="77966" stop="74937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77669" g_stop="77487" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77486" i_stop="76415" i_length="1072">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76414" g_stop="76331" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="268" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76330" i_stop="75621" i_length="710">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75620" g_stop="75538" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="351" r_length="83" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75537" i_stop="75393" i_length="145">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75392" g_stop="75237" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="507" r_length="156" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E409501" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77669" e_stop="77487"/>
          <exon e_start="76414" e_stop="76331"/>
          <exon e_start="75620" e_stop="75538"/>
          <exon e_start="75392" e_stop="75237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAAGAGAAGCAAGAGAGAGATTTTTCGAGCA-AAGAAAAAAAAAATATGAGTGGAGGATTATCACAAGACTGGGAGCCGGTGGTGATCCGGAAGAAGGCACCGACCGCCGCCGCACGCAAGGATGAGAAAGCTGTCAACGCTGCCCGTCGCTCCGGTGCTGAGATCGAAACTATCAGAAAATGTTCGTATTCTCGTCGCTGCTTCGTTTTTTTCATCTCTACAAAGCTCATATATATGATGATGTTCTAACTATAAACGTTAGCTTAATCATTTCTTCGATTGATCGTATAATCTGTTAATTTTATTTCGATAGAGATTTTCAGCTCGATTATTGTTGCTGGCTCTTGTATTGCTTAATTTTCTTATTTCTATATGCAGGTCCGATTATGCTAAGTCTTCAGCTAGGGTTTTCATTTTTTATTTTTTTTTTGGTTAGGATTGTTTGATTGATTGATGTACATGCCTATTTTAAGCTATTTCAAGTATGTACGTTGTTTAGTTGACATGTTTCTTGGTATATGGATAGCTTAAGGACTGGTGTATTATCTCTGCTGTGGTGTAGGGTTGCTTATGAAGACCAAACTTGTTGATTTTCATGAGAATCAGAGCTTCCGGTTGCTGGAAATAACTGTTTTCTGCTTATTTTGTGTAGATTGAAGTCTTATATCATCCTTCCCGTGCCGGTCTAATTTCCATATTCTTGCGTACACATGTAACTAAGAAAGTTGAGTAGAAGTATAATCCTTAAACGTGTCTTCCTATCCTTTCATACTAGAATTTAAATAATTGTTGTATTGCATCATGCTACCTTCTTTCATTTGAAACTCGAAGTTTCTTTCAATCTACATTGATTCTGGAGATCTATAGTTGAATCTGGTTACGAGAAACCGTAAGGTGTGAATGAAAATGAATTCCCTATTTGTAGAGATGGTATATTTGATGGCACATATCTAACATTTCTTGATTTTGATATACATTTTTCCAGTGCGTTGCAGTTACTTTAGAATATATTCTTTGTTGTTAGAATGTAAACTTTTACAAATATGAGGGTCCTTGCATGGCAATATGATGAGTTCTATTGAATACTCTCTTTTGAGCTCCCCCACCCCCCACAGACACACAAATCTTTCCATCCAGAGTCCCTTCCTTTTTTTTTCCCAATTTCTATGTTGCCCGGTTTTCCTATTAGTAAACTTGTGCGTAATTTTTTTTGAGTGATTGTTGGTGCTTACAATATCTATCTTCTATTGCAGCAACTGCTGGCTCAAACAGGGCTGCCTCTAGTAGTACGACCTTGAACACCAGGAAACTTGATGAAGATACTGAGAATCTGGCTCGTAAGTTAAAGCAACACCTTTTACAACTTAATTAGAAATGTGTGTACGAGCATACATATTTATGTTGTGTTCTTTTGGTTGAAGTCATGCTTGCTTATAATTGTTCTTTGGTGTTAACTTTGATCTCCTCTACATTATTTTGATGGTATTATGTTAACTACTTCTGATGTTTCAAACACATACTTCCATCATTGAATGTGTATGCAAGATTTTGAAATTTCTTTGAACTTCATTATAATGAGAAGAAGATGCCTTCTTAAGGTCTGTGAATCTAAATGTTTTGGGAACACATCTACCCTGTCAAATGAAAATCATCCTTAATATTCTCTCTGCATCTCTACTGCTTTATTCATAAACACATTACGCAGTCTGCTCTATTCGTTCCCGCTAGAAATCGTTTTATTCAACATCCATAATTCTTATGCATGTGATGTCACGTTGCTGGAGATAGTGGTTAATAACTTTATTTCATTTGTGTTCTCGCTCTTCTCTTTTATATGTTCTCTTTCTTCCGTTCTGATAGATCTCCTGCTATTTAATGATCTAATTTTGTTATTTGAGCTGTGTTTGAGTTCTGTATCTGTTTCTACTCGTTTATGTATGCATTTCATCCTCAGCAAACAATATAGTAATATTTTTTACCACAACTAACTCATTCTTCCGTATGACATTTTCTGTTTGAAATTTTTCATTTTTTACCTTGTTGTCAGATCAAAAAGTACCGACTGAGCTGAAGAAAGCCATCATGCAAGCTCGACAAGATAAGAAGCTGACTCAGTCTCAACTTGCTCAGGTATACCATTTTTCTGTCTCCCTGCTCCCCTCCTGCCACCCAAAGACTTAAGAGAGGGGGGTGGGGGGTTGAACAGATTGAGAGTACCAGATGACTGATTCGATAATCTGTGAAAATGGTTCTGATATTCCTTGTTGTTTTGCAGCTGATAAATGAGAAGCCTCAAATCATCCAGGAGTACGAGTCAGGAAAGGCAATTCCAAATCAACAAATCATCTCTAAACTGGAGAGAGCTCTTGGTGCCAAACTTAGAGGAAAGAAATGAAGAGCCTCTTGGCTTCTCAAATCTCTATTCCAGTTC</genome_strand>
        <mrna_strand>GAAAGGAGAAGCAAGAGAGAGATTTTTCCCGCAGAAGAAAAACAAAAAATGAGTGGAGGATTATCACAAGACTGGGAGCCGGTGGTGATCCGGAAGAAGGCGCCGACCGCCGCCGCACGCAAGGATGAGAAAGCTGTTAACGCTGCCCGTCGCTCCGGTGCTGAGATCGAAACCGTCAGAAAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCTGGCATAAACAGGGCTGCCTCTAGTAGTACGACCTTGAACACCAGGAAACTTGATGAAGATACTGAGAATCTGGCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAAGTACCAACTGAACTAAAGAAAGCCATCATGCAAGCTCGACAAGATAAGAAGCTGACTCAGTCTCAACTTGCTCAG.................................................................................................................................................CTGATAAATGAGAAGCCTCAAATCATCCAGGAGTATGAGTCAGGAAAGGCAATTCCAAATCAACAAATCATCTCTAAACTGGAGAGAGCTCTTGGTGCAAAACTTAGAGGAAAGAAAATGAGAGCCTCTTGGCTTCTCAAATCTCTATTCCAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E247123" ref_strand="+" ref_description="SGN-E247123 [cLEF-46-M11]">
      <seq>aaagcgaagagaagcaagagagagatttttcgagcaaagaaaaaaaaaatatgagtggaggattatcacaagactgggagccggtggtgatccggaagaaggcaccgaccgccgccgcacgcaaggatgagaaagctgtcaacgctgcccgtcgctccggtgctgagatcgaaactatcagaaaatcaactgctggctcaaacagggctgcctctagtagtacgaccttgaacaccaggaaacttgatgaagatactgagaatctggctcatcaaaaagtaccgactgagctgaagaaagccatcatgcaagctcgacaagataagaagctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="77972" stop="75258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77672" g_stop="77487" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77486" i_stop="76415" i_length="1072">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76414" g_stop="76331" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="270" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76330" i_stop="75621" i_length="710">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75620" g_stop="75558" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="333" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E247123" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77672" e_stop="77487"/>
          <exon e_start="76414" e_stop="76331"/>
          <exon e_start="75620" e_stop="75558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCGAAGAGAAGCAAGAGAGAGATTTTTCGAGCAAAGAAAAAAAAAATATGAGTGGAGGATTATCACAAGACTGGGAGCCGGTGGTGATCCGGAAGAAGGCACCGACCGCCGCCGCACGCAAGGATGAGAAAGCTGTCAACGCTGCCCGTCGCTCCGGTGCTGAGATCGAAACTATCAGAAAATGTTCGTATTCTCGTCGCTGCTTCGTTTTTTTCATCTCTACAAAGCTCATATATATGATGATGTTCTAACTATAAACGTTAGCTTAATCATTTCTTCGATTGATCGTATAATCTGTTAATTTTATTTCGATAGAGATTTTCAGCTCGATTATTGTTGCTGGCTCTTGTATTGCTTAATTTTCTTATTTCTATATGCAGGTCCGATTATGCTAAGTCTTCAGCTAGGGTTTTCATTTTTTATTTTTTTTTTGGTTAGGATTGTTTGATTGATTGATGTACATGCCTATTTTAAGCTATTTCAAGTATGTACGTTGTTTAGTTGACATGTTTCTTGGTATATGGATAGCTTAAGGACTGGTGTATTATCTCTGCTGTGGTGTAGGGTTGCTTATGAAGACCAAACTTGTTGATTTTCATGAGAATCAGAGCTTCCGGTTGCTGGAAATAACTGTTTTCTGCTTATTTTGTGTAGATTGAAGTCTTATATCATCCTTCCCGTGCCGGTCTAATTTCCATATTCTTGCGTACACATGTAACTAAGAAAGTTGAGTAGAAGTATAATCCTTAAACGTGTCTTCCTATCCTTTCATACTAGAATTTAAATAATTGTTGTATTGCATCATGCTACCTTCTTTCATTTGAAACTCGAAGTTTCTTTCAATCTACATTGATTCTGGAGATCTATAGTTGAATCTGGTTACGAGAAACCGTAAGGTGTGAATGAAAATGAATTCCCTATTTGTAGAGATGGTATATTTGATGGCACATATCTAACATTTCTTGATTTTGATATACATTTTTCCAGTGCGTTGCAGTTACTTTAGAATATATTCTTTGTTGTTAGAATGTAAACTTTTACAAATATGAGGGTCCTTGCATGGCAATATGATGAGTTCTATTGAATACTCTCTTTTGAGCTCCCCCACCCCCCACAGACACACAAATCTTTCCATCCAGAGTCCCTTCCTTTTTTTTTCCCAATTTCTATGTTGCCCGGTTTTCCTATTAGTAAACTTGTGCGTAATTTTTTTTGAGTGATTGTTGGTGCTTACAATATCTATCTTCTATTGCAGCAACTGCTGGCTCAAACAGGGCTGCCTCTAGTAGTACGACCTTGAACACCAGGAAACTTGATGAAGATACTGAGAATCTGGCTCGTAAGTTAAAGCAACACCTTTTACAACTTAATTAGAAATGTGTGTACGAGCATACATATTTATGTTGTGTTCTTTTGGTTGAAGTCATGCTTGCTTATAATTGTTCTTTGGTGTTAACTTTGATCTCCTCTACATTATTTTGATGGTATTATGTTAACTACTTCTGATGTTTCAAACACATACTTCCATCATTGAATGTGTATGCAAGATTTTGAAATTTCTTTGAACTTCATTATAATGAGAAGAAGATGCCTTCTTAAGGTCTGTGAATCTAAATGTTTTGGGAACACATCTACCCTGTCAAATGAAAATCATCCTTAATATTCTCTCTGCATCTCTACTGCTTTATTCATAAACACATTACGCAGTCTGCTCTATTCGTTCCCGCTAGAAATCGTTTTATTCAACATCCATAATTCTTATGCATGTGATGTCACGTTGCTGGAGATAGTGGTTAATAACTTTATTTCATTTGTGTTCTCGCTCTTCTCTTTTATATGTTCTCTTTCTTCCGTTCTGATAGATCTCCTGCTATTTAATGATCTAATTTTGTTATTTGAGCTGTGTTTGAGTTCTGTATCTGTTTCTACTCGTTTATGTATGCATTTCATCCTCAGCAAACAATATAGTAATATTTTTTACCACAACTAACTCATTCTTCCGTATGACATTTTCTGTTTGAAATTTTTCATTTTTTACCTTGTTGTCAGATCAAAAAGTACCGACTGAGCTGAAGAAAGCCATCATGCAAGCTCGACAAGATAAGAAGCTGA</genome_strand>
        <mrna_strand>AAAGCGAAGAGAAGCAAGAGAGAGATTTTTCGAGCAAAGAAAAAAAAAATATGAGTGGAGGATTATCACAAGACTGGGAGCCGGTGGTGATCCGGAAGAAGGCACCGACCGCCGCCGCACGCAAGGATGAGAAAGCTGTCAACGCTGCCCGTCGCTCCGGTGCTGAGATCGAAACTATCAGAAAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTGCTGGCTCAAACAGGGCTGCCTCTAGTAGTACGACCTTGAACACCAGGAAACTTGATGAAGATACTGAGAATCTGGCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAAGTACCGACTGAGCTGAAGAAAGCCATCATGCAAGCTCGACAAGATAAGAAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E201462" ref_strand="+" ref_description="SGN-E201462 [cLEC-4-O17]">
      <seq>gcaagagagagatttttcgagcaaagaaaaaaaaaatatgagtggaggattatcacaagactgggagccggtggtgatccggaagaaagcaccgaccgccgccgcacgcaaggatgagaaagctgtcaacgctgcccgtcgctccggtgctgagatcgaaactatcagaaaatcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="77959" stop="77187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77659" g_stop="77487" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E201462" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>173</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77659" e_stop="77487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAGAGAGATTTTTCGAGCAAAGAAAAAAAAAATATGAGTGGAGGATTATCACAAGACTGGGAGCCGGTGGTGATCCGGAAGAAGGCACCGACCGCCGCCGCACGCAAGGATGAGAAAGCTGTCAACGCTGCCCGTCGCTCCGGTGCTGAGATCGAAACTATCAGAAAAT</genome_strand>
        <mrna_strand>GCAAGAGAGAGATTTTTCGAGCAAAGAAAAAAAAAATATGAGTGGAGGATTATCACAAGACTGGGAGCCGGTGGTGATCCGGAAGAAAGCACCGACCGCCGCCGCACGCAAGGATGAGAAAGCTGTCAACGCTGCCCGTCGCTCCGGTGCTGAGATCGAAACTATCAGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E216482" ref_strand="-" ref_description="SGN-E216482 [cLEL-1-O22]">
      <seq>aaaaaaatcaagtctcttggtttgtaatagtctagcaaaacttggaaactaagtatctcatgaactcaaatgtaatagttagtagtactgccaactatggtgtacccgctcggaacataagcacttgagatctcatgttctaggttatgccataatttctaatttttgcttgtttatagttgcatgttgttgagatttcgaagaatatgtttttgtatttagatggaaaaactctgttggatgaccgaggaaaacactctgtttaaacccacttaatagtagttgatttggcattgacaacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="79610" stop="78707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79310" g_stop="78993" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E216482" ref_strand="-">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216482" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="79310" e_stop="78993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAATCAAGTCTCTTGGTTTGTAATAGTCTAGCAAAACTTGGAAACTAAGTATCTCATGAACTCAAATGTAATAGTTAGTAGTACTGCCAACTATGGTGTAACCGCTCGGAACATAAGCACTTGAGATCTCATGTTCTAGGTTATGCCATAATTTCTAATTTTTGCTTGTTTATAGTTGCATGTTGTTGAGATTTCGAAGAATATGTTTTTGTATTTAGATGGAAAAACTCTGTTGGATGAACGAGGAAAACACTCTGTTTAAAAAGACTTAATAGTAGTTGATTTGGCATTGACAACATATGGTTGAAATGTTT</genome_strand>
        <mrna_strand>AAAAAAATCAAGTCTCTTGGTTTGTAATAGTCTAGCAAAACTTGGAAACTAAGTATCTCATGAACTCAAATGTAATAGTTAGTAGTACTGCCAACTATGGTGTACCCGCTCGGAACATAAGCACTTGAGATCTCATGTTCTAGGTTATGCCATAATTTCTAATTTTTGCTTGTTTATAGTTGCATGTTGTTGAGATTTCGAAGAATATGTTTTTGTATTTAGATGGAAAAACTCTGTTGGATGACCGAGGAAAACACTCTGTTTAAACCCACTTAATAGTAGTTGATTTGGCATTGACAACAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E216041" ref_strand="+" ref_description="SGN-E216041 [cLEL-13-N7]">
      <seq>ttttttttttttttttcaatgccaaatcaactactattaagtctttttaaacagagtgttttcctcgttcatccaacagagtttttccatctaaatacaaaaacatatttctttgaaatctcaacaacatgcaactataaacaagcaaaaattagaaattatggcataacctagaacatgagatctcaagtgcttatgttccgagcggttacaccatagttggcagtactactaactattacatttgagttcatgagatacttagtttccaagttttgctagactattacaaaccaagagacttgatttttttcggaatatagtagtagcctttgttatcttgttgtaggttggtactaaaccatggctgtgcattcaacaaaaacattaagctgatgtagagggagatctcttggaatctttagttgccaaaatttgtgccaccttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="78707" stop="79747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78999" g_stop="79447" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E216041" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78999" e_stop="79447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACCATATGTTGTCAATGCCAAATCAACTACTATTAAGTCTTTTTAAACAGAGTGTTTTCCTCGTTCATCCAACAGAGTTTTTCCATCTAAATACAAAAACATA-TTCTTCGAAATCTCAACAACATGCAACTATAAACAAGCAAAAATTAGAAATTATGGCATAACCTAGAACATGAGATCTCAAGTGCTTATGTTCCGAGCGGTTACACCATAGTTGGCAGTACTACTAACTATTACATTTGAGTTCATGAGATACTTAGTTTCCAAGTTTTGCTAGACTATTACAAACCAAGAGACTTGATTTTTTTCGGAATATAGTAGTAGCCTTTGTTATCTTGTTGTAGGTTGGTACTAAACCATGGCTGTGCATTCAACAAAAACATTAAGCTGATGTAGA-GGAGATCTCTTGGAATCTTCAGTTGCCAAAATTTGTGCCACCTTGTTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTCAATGCCAAATCAACTACTATTAAGTCTTTTTAAACAGAGTGTTTTCCTCGTTCATCCAACAGAGTTTTTCCATCTAAATACAAAAACATATTTCTTTGAAATCTCAACAACATGCAACTATAAACAAGCAAAAATTAGAAATTATGGCATAACCTAGAACATGAGATCTCAAGTGCTTATGTTCCGAGCGGTTACACCATAGTTGGCAGTACTACTAACTATTACATTTGAGTTCATGAGATACTTAGTTTCCAAGTTTTGCTAGACTATTACAAACCAAGAGACTTGATTTTTTTCGGAATATAGTAGTAGCCTTTGTTATCTTGTTGTAGGTTGGTACTAAACCATGGCTGTGCATTCAACAAAAACATTAAGCTGATGTAGAGGGAGATCTCTTGGAATCTTTAGTTGCCAAAATTTGTGCCACCTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E744782" ref_strand="+" ref_description="SGN-E744782 [GI|6688532]">
      <seq>agggggttgatggctactcgtaatttggagaaatttgcatctatagatgcacagatgaggcttttggtacctactaaggtgtctgaagatgatatgcttgttgagtatgatgctttgcttttggatcgatttcttgatattcttgaggatttgcatggagagggtatcaaaacaacagtccaagaatgttatgagctttctgctgagtatgaaaacacgcatgataagaagaagctggaggagcttggcagtgtgttgacaactttggatccaggggattcaattgttgttgctaagtcgatatcccatatgcttaacatggccaacttggctgaggaggttcagattgccaacagtgggagggcaaagtcgaaaaagggcgaactttcagatgagagcaacttgatgactgaatccgacattgaagaaacactcaagagacttgtagtgaacttgaacaagtctcctcgagaagtttttaatgctctgaagaatcagactgtggatttggtctttactgctcatccgactcaagctatccgaagatctttgcttcagaagcatgcaaggatccgcaattgtttgtctcagttgtatgctaaagacattacacccgacgataaagaggagctggatgaagctttagagagagagattcaagctgctttccgcactgatgaaatcagaaggactcctccaacaccacaagatgaaatgagagctggaatgagttacttccatgaaacaatttggaacggtgttccgaagtttctacgacgtgtagacacagctcttaaaaacatagggattgatgaacgagttccttataatgctcctctcattcagttctcgtcttggatgggtggcgaccgtgatggtaatccaagagtaactcctgaggtcactagagatgtttgcttattggcccgaatgatggcagcgaatttgtactactctcagatagatgatctaatgtttgagttatctatgtggcgttgcaatgacgagcttcgtgatcgggcagatgaactacaccgttcattaaagagagacgaaaaacactatatagaattctggaaacaagttcctccaagtgaaccatatcgtgtaattattggtgatgtgagagataagctatatcatacacgtgagcgtactcgccaactgttatcccatgggttctctgaaattcctgaggaagcaacatatactaacatcaagcagttcttggaacctcttgagctctgctacagatctctttgtgcttgtggggatcgaccaattgctgacggaagccttctggattttctacgacaagtttctacctttggactctcacttgtgagacttgacataagacaagagtcggatcggcacactgatgtccttgatgccattacccagcacttggaaattggttcatatcgagagtggtctgaggaacgtaaacaagagtggcttctctctgaactcagcggcaagcgacctctatttggacccgacctaccaaaaactgaagaaattgatgatgttttgaatacattccatgtcatatcagaacttccatcagactgctttggggcatacatcatctcaatggccactgcaccatctgatgtgcttgctgttgagcttctacagcgtgaatgccacgtgaagcaacctttacgggtagttccactttttgagaaattggatgatctggatgctgctcctgctgctattgcacgtcttttttcaattgagtggtacaaaaaccgcattaatgggaagcaagaagtcatgattggctactcagactctggaaaggatgctggtcggctgtcggcagcatggcagctatataaggctcaagaggagcttataaaagttgccaaacaatatgacgtgaagctaattatgttccatggcagaggtggtacagttggaagaggaggtggtcctagccatcttgctatattatctcagccacctgatacgattcagggatctcttcgcgtaacagttcaaggtgaggttattgagcaatcatttggggaggaacacttgtgttttaggacactccaacgtttcacttctgccaccctagaacatggaatgtatccacctttccccccaaagccagaatggcgtgcacttctggatgaaatttctgttgttgctacagagaagtataggtcaatagtattcaaggaaccccgatttgtcgagtacttccgcctggcaacacccgagctggagtatggtcgaatgaacattggtagccgtccatcaaagcgtaaacgaaatggaggcatagaaacacttagagccattccatggatatttgcatggacccagactaggtttcatctgccggtctggcttggctttggggcagcatttaagtatgcacttaacaaggataaaaaaaacctcaatatgctgcgggacatgcacaaaaaatggccattttttagagttactgctgatttgattgagatggtgtttgctaagggagaccccggcattgctgctttatacgacaagcttctggtttctgaagatttgtggtccttcggtgagcttttgaggtctgactatgaggagacaaagagcctcctgcttaaggttgctggacacaaggaacttctggagaacgatccctccttaaaacaacgactcaggctgcgtgattcctatatcactactttaaatgtctgccaagcttacacactaaagaggattcgtgatccaacctacaaagtcactccaaggcctcacattaccaaggaatacatagaatcgaaacctgctgctgaactcgtgagcctgaacccacaaagcgaatatgctcccggcttggaagacacactcatcttgaccatgaaaggtattgctgctggaatgcagaatactggttaaatctattactatgtttttatgttttaatggttgataaagtgaacattaagaatcatgtatccttgagttcatcttttttttttttttgcaacttccataaaatggatgaataattattcccctctttgtttagtagcttcttgaataaaattatgatgtaaaagagtacttctcttcatttaccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="7535" stop="102128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80095" g_stop="80172" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80173" i_stop="85017" i_length="4845">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.576" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85018" g_stop="85029" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="89" r_length="11" r_score="0.750"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85030" i_stop="87104" i_length="2075">
            <donor d_prob="0.638" d_score="0.00"/>
            <acceptor a_prob="0.399" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87105" g_stop="87120" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="105" r_length="16" r_score="0.562"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87121" i_stop="89628" i_length="2508">
            <donor d_prob="0.557" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89629" g_stop="89640" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="117" r_length="12" r_score="0.833"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89641" i_stop="92407" i_length="2767">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.66"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92408" g_stop="92448" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="158" r_length="41" r_score="0.659"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92449" i_stop="94377" i_length="1929">
            <donor d_prob="0.267" d_score="0.66"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94378" g_stop="94403" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="182" r_length="24" r_score="0.615"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="94404" i_stop="95352" i_length="949">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.954" a_score="0.54"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95353" g_stop="95400" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="226" r_length="44" r_score="0.542"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="95401" i_stop="96998" i_length="1598">
            <donor d_prob="0.999" d_score="0.54"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96999" g_stop="97341" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="569" r_length="343" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="97342" i_stop="97487" i_length="146">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97488" g_stop="97572" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="654" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="97573" i_stop="98190" i_length="618">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="98191" g_stop="98413" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="877" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="98414" i_stop="98636" i_length="223">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="98637" g_stop="98740" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="878" r_stop="981" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="98741" i_stop="98841" i_length="101">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="98842" g_stop="98929" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="982" r_stop="1069" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="98930" i_stop="99198" i_length="269">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.684" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="99199" g_stop="99353" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1070" r_stop="1224" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="99354" i_stop="99748" i_length="395">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.461" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="99749" g_stop="100747" g_length="999"/>
          <reference_exon_boundary r_type="cDNA" r_start="1225" r_stop="2223" r_length="999" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="100748" i_stop="100863" i_length="116">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="100864" g_stop="101250" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="2224" r_stop="2610" r_length="387" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="101251" i_stop="101348" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="101349" g_stop="101828" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="2611" r_stop="3090" r_length="480" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E744782" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>3097</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80095" e_stop="80172"/>
          <exon e_start="85018" e_stop="85029"/>
          <exon e_start="87105" e_stop="87120"/>
          <exon e_start="89629" e_stop="89640"/>
          <exon e_start="92408" e_stop="92448"/>
          <exon e_start="94378" e_stop="94403"/>
          <exon e_start="95353" e_stop="95400"/>
          <exon e_start="96999" e_stop="97341"/>
          <exon e_start="97488" e_stop="97572"/>
          <exon e_start="98191" e_stop="98413"/>
          <exon e_start="98637" e_stop="98740"/>
          <exon e_start="98842" e_stop="98929"/>
          <exon e_start="99199" e_stop="99353"/>
          <exon e_start="99749" e_stop="100747"/>
          <exon e_start="100864" e_stop="101250"/>
          <exon e_start="101349" e_stop="101828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAGTTGGCCATTCCGATTCTAATGTGATGCAAAATAAATTAAGAATTCACATGGCTATATGTTGAAGAAATAAAAGATTCTTCAAGAAATCTTTTTTATAGCTTGTTCTCATGATAAATGATCATTGTACCAGCTAAGGTTGGGATTGTATCCTCTAAAATTATTTGGAAAATATAAAAAGGTGAATATGGGTCCGTTCACCTGCCATGTGGACCGTTTACTATTATGATTTAATAGATGCATCTATCATATGGTCACATGTATATTTGTATCAACTTACTAATTGGTTTTTGTAAGGTGGCTTGCTCGAATTACTGAATTAAGATCACAGTTCGAAACTATGAAGTCATGTTGATAATGCTGGTTGGTTTAGCAGAAATTATATGCCTCTAACTATAGCTAGACCATTGATTATAAAAACAAATCTCTCATATGAGTTTATTTAACATGTATGCATCAAGCCAACAAGGTTCTCCCATCACATGGTTCAGGGTCAGGAATCAAATAATTTCCATCTAAAAATTTAATGTGTGCACATATGATTTTATTGCTCCACCACGCATAAAGATGGATACTCAAATGAGATTGAGGGTGAATGCTAGATTTCCTAACATTAGGGGAGACATGTGTAGCAGCTGAAAATTATGTATGGGGTGAATTATCTAGATTCTTGTTAAAAAATATGTGAACTTGAAAGTTCAAGAGATAATTCATTTCCAAAATGTTGCAAGTAATTTGCCAAATGTATTTAATGAACCAATATTTTAATTAAGCTGCAAATGCTCCAATAAATAGTCCTTGAAGGTTATAGTCTATGGTACGCCAGAAGTGTGATAGACTAATCGGCTCCAAACGTAAAACTCCTTTAGAAATAAGAGGAACAAATTATCAAAATGGTCATGATAATGAGGTAAGTGCTTTGAAAGAACACTATGACATAACACTTCATAAAACCTTGGCAAAGGTTCAGGTACCTGAAAATGATGAAAAATGAAGTATTCTCAATAAGTTATCTCGTATTGAAAACAAAATGACCGTCAACGGAATATTTGATATGAAGTAGCGCTCAATGATATAAATGGTTACGAGAATTTTAAAATTGAATCTGCCATATAGTGTGGAAAGATAAATGATTAGCCAATGATATGCACTATTCAGTATATTTTGTTTCACTTGGAAAAGTGATGTTTTTGAACTTATAGTTCATAGATCAAAATATATGTTAGTGGATACAAATGAACCATTGTGTGAACGCATAACCGTAAGATATAAAGTACGGTTTGTGACTTGGGGAATAAAAGACCTTTGCAAAAATCCTGACATTATTAAATGGAGATATATTCTCTAATGGTAGATGCAGTATGACTTGTTTCAGTCTAGCAATAGATAAAATCCTCGAATATGCATAATGATTGATTATTATGTCTAACTTGAATATGAAGGTTAAAAGAAGAATTTAAAAGGTGTTAAAGCAATTTCATTGAGTATCCAATGGTTTTGAGACAGCTTAACACAGAAAAGAATCTTTTTGATATCATGAAAATGAATTAAGATGTCATGTATTAGTGCAATTGGTGCACTTACATATTGTTGGTTATGCAAATGCTAGAAGATTATTTGATATACAACGAAAGTTTTGTGAAAAGATTGACATAGTATCATTTAAGTTATGACAAGAGACTACAAAGCAAGTGACTCAACGCAAAGAAGATGTATAATTTTCTTTGAGAATAAAAGATGAGCTCCAATAAAATTGAAAGGATCAATCTCCGAGTCAGAAATGATTTGATTATGTAGATGTAGAATATTTATTTGATCCCCTCATAAAGCTCGATTGCAAATGGATTATTTATTTACATATGAAGGTACAACAATATCTTGGCGTTCAAAGAATCAAACACTGACAACCACTTCTTCAAATCATGCAGAAATAATATTTACATATGAAGTAAGTCGGGAGTGTGTTTGATTGGAATCATGATTTGTCATATTCAACCAAAATGTGATTTTCCTTTGGTAAAGGATATTCTAGCCACTATATACGAAAATAATATTGAAGGGAGGAAACAATCTAATGAGACAGGACAAAACATTTTTCACCAAAAGTATTTTCCACATGTGATCTTCAACAAAATGGTGAAATGACGTTCAAAGACTCGTTCAAGTAATAATCTTGTAAATTTATTCACTAAATGTTGAATGCCTTGAATTGGGCCCTTAATTATCTGTCAATTCTATATTTTGGGTCCAAGCATGTTAGGGCGTAGCTTAGCACTATATATAGACGCTATGGCAAACCCTATTCTGTAATTCAGTTCTTGCCTCTCCATAATAAAACTGCTCCCCCTCTTCCCGTGGACGTAGCCAATTTATTGGTGAACCACGTAAATCTGTTGTCTTGTTCTTTCGCGTTTATATTTTCTCGTATTATCTCAAATTCCGCACAACAAATTGGTATCAGAGCCTCTCGGTTAATCGGTGTTCTTGGAGAATTCGAGATGTCTGCTTTGAACGTGAAAATTGACAAATTCACAGGGAGGAACAATTTCAGTTTAAGACAGATCAAGATGCGGGCTTTGTTGAAATAGCAAGGCTTCTGGGCGCCGTTGTCGAAAGACAAGAACGCCGTCGTTACTCCTGAGATGGCGATTCTGGAGGAAAAGGCGCACTCGACGATCATGCTGTGTCTCGCGGATGACATCATCACGGAGGTCTCGGATGAAGAGACTGCTACTGGTCTGTGGTTGAAGCTGGAGAGTTTGTACTTGACAAAATCTCTAACCAACAAGCTGCTTCTGAAACAACGTCTATTCGGTTTACAAATGGCTGAAGGTACACAACTCAGGGAACATTTAGAGCAATTGAATACTTTGTTATTAGAATTGCGTAATATCGATGTGAAGATCGAGGATGAAGATGCTGCTTTGATTCTGTTAGTATCTCTCCCAATGTCGTTTGAGAATTTTGTTCAATCGTTCATTGTTGGGAAAGATACTGTGTCGCTGGAAGAAGTCAGATCGGCCCTTCATAGCAGGGAATTACGGCATAAGGCTAACGGCACAAGTACGGACATACAACCTTCCGGTCTGTTCACCAGTAGCGGAAAGGGAAGGAAAAACGACGGAAAGAAAAATAAGCCGATGTCGAAGGGTGCAAAGCCGGATGATGTTTGTAATTACTACAAGGAGAAGGGACATTGGAAATTTGATTGTCCAAAGAAGAAGAAGTAATCGGAAAAACAATCAGTTTCTGCTGCTGTTGCTGAAAAAGACACCAATTCTGAAGAAGACATTGCCCCTAGTTGCGGATGAGCACACTCATCATTCAGATGTGTGGGTTCTCGATTCTGGGGCATCCTATCACATCTGTCCTAGGAGAGAGTGGTTCACGACTTATGAGCAGGTAGACGGAGGCAGCATCTCGATGGCCAACAATTCTGTATGCAAGGTGGTTGGTACAGGCTCGATTAAGATAAGGACACATGACGGTAGCTTCTGCACATTGAACGAGGTCAGGCACGTTCCATTGATGACGAAAAATCTGATATCTCTCAGTCTTTTGGACAGCAAGAGATTCAGCTGGTCAGGAAAAGATGGAGTCGTGCGGGTCTGGAAGGGTTCAAATCTGATTCTGAAAGATGTCATGCGTGGTACTTTGTATTTTCTACAAGGTTCCACGGTTACAGGTTCAGCCCATGTTGCATCGTCAGAAGTGCACCAGGAGGATATGACTAAGTTATGGCACATGAGACTTGGTCATATGGGTGAAAGAGGGATGCAAATTCTGTCTAAGGAGGATCTTCTTGCTGGTCATAAGGTTAAGAGCCTAGAGTTTTGTGAACATTGTGTATTTGGAAAACTACATCGCAACAAGTTTCCAAAGGCCATTCACAGAACAAAAGGCACACTTGATTATATCCATTCTGATTATTGGGGTCCATGCCCTGTTGAGTCTTTGGGAGGCTGCAGATTTTTTTGTGTCCATTATTGATGACTACTCAAGGATGACTTGGTTATACATGATGAAGCATAAAAGTGAAGCTTTCCAGAAGTTCAAGGAGTGGAAAATATTGATGGAAAATCAAACAGGGAAGAAGATCAAGAGGTTGCGAAATGATAATGGGCTGGAATTCTGTTGGTCTGAATTTGATCAATTCTGTAAGGGTGAAGGGATTGCTCGACATCGTACAGTCAGAAATACACCACAACAGAACGGTGTAGCTGAGCGGATGAATCAAACACTTCTGGAGAGAGCAAGGTGCATGCTCTCTAATGATGGGCTAGATAGAAGATTTTGGGCAGAAGCGGTTAGTACAGCTTGCTACTTGGTTAACCGCGGACCACATACAGGCATACAGTAAGAACCTATGGAGATGTGGTCAGGAAAAGCTGCTGATTATTCAAATCTGAAAGCTTTTGGTTGTACGGCTTACTATCACGTCAGTGAAGGTAAGTTAGAACCAAGAGCTAAAAAGGGAGTATTTGTGGGCTACGGAGATGGAGTGAAAGGTTTCAGAATCTGGTCTCCAGCAGAAAATAGGGTTATTATGAGCAGGAACGTTGTCTTTGATGAAAGTTCTCTTCTTAGAACCATTGTGAAGCCTACAACTACATCAAAAACTGGGAGTCTTGATAAACAGGTGGAGTTTCAAGTCATTCAGAATGAGAGCGATTTGAAAGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTTCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTAAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCTCTACTTACAAAGAAGCCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATAGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGTTTTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGATGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTACACATTAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACTCGGCCGGATGGTTTTCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTACAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAAGGATGATACATTCATCTATCTGATGCTTTATGTACATGATATGCTGATAGCTGCAAAGAAGAAGTATGATATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTCTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCTATTGATACCCCCAGTGCTGCCAATATCCATCTCACTACCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCAGGAGTCCCTTATGCTAGTGCCATAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTTCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCTGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTTGCAACCTACAGTGACTTTGTCTACTACGGAAGCGGAGTACATGGCCTTGACAAAGGCTGCAAAAGAAGGGATTTGGCTGAAAGGGCTGGTTAGTGATCTTGGTCTGCATCATGATCAGGCTACGGTGTATTGTGACAGTTTGAGCGCAATTTGTCTAGCCAAGGATCAAGTCCATCATGAGAGAACCAAACATATTGACATGAGGTATCATTTTCTGAGAAGTGAGAAGAGAATCAAGGTGAAGAAAGTAGGAACTGCTGATAATCCTGCTGATATGTTCACAAAGCCGGTTCCACAGAGCAAGTTTCAACACTGTTTGGACTTGCTCAACATCAGAAGCTGTTAATTGCCGTGCGGGGCAATTTTGAGGAAGAGGGGGAGGCCTGGCACTATCATAGTGCGTCTGAAGAATCTGTTTGGAGAATTCAAGTCAAGGTGGAGATTTGTTGAATGCCTTGAATTGGGCCCTTAATTATCTGTCAATTCTGTATTTTTGGCCCAAGCCTGTTAGGGCGTAGCTTAGCACTATATATAGACGCTATGGCAAACCCTATTCTGTAATTCAGTTCTTGCCTCTCCATAATAAAACTGCTCCCCCTCTTCCCGTGGACGTAGCCAATTTATTGGTGAACCACGTAAATCTGTTGTCTTGTTCTTTCGCGTTTATATTTTCTCGTATTATCTCAAATTCCGCACAATACTAAAGATTGCCAACATCAAATTTGAGAAGTTGTGAAGCAAGACTGGAATGCACTGGTATCAAGATATCAAGTAAACTTTTTGTCAGGGGGAGAAAAATATGTGTTGTACTCTTTTCCTTAACCATGGTTTTGTCCCAATTGGGTTTTTCTAGTAAGGTTTTTAATGAGGCAACATTCAAAGCGTATTAAAAGATATGTGTACTCTTTTTCCTTCACTAGGATTTTTTCCCACGGAATTTTTTTTCTAGTTAGATTTTAACGAGGCATATTATCTATGGACATCCAAGGGAGAGTATTAAAAAATAATATATTACACAAAATGGTTACTACATTACTTCCCTCCATTATGAAGATAATCCCCTATACCAAGAAGTTACTACATTACTTTCCTCCATTATGAAGATGACCTTCACCTTTATGATAATTATTCTTGTAACTTTTCACCTCCATAACCTCCTTTTTTATATTCATATTTTAACGCAATGTTTATGACTAACTTTTTGTATGCATCTATGTTACACTATAAATAGAGACATAAGGGTTCCAATTGTATACACTTTAAATTTTAATGAATACTAGGTCAATAGTAATAAATGAAATTGTAAAAAAATAGAAGTGTCTTGGAATGTGTGTAGGTACATATGAAAACGTCAATTTATCTTGAAAATTGTTTGTTTTAGTGCTACTTTCATTTCAAATTAATTGAACTGTTGAATATTTTTTATTTATCGAATTAATTTAATTGTTTAATTTTTTAGACTATTTTTAAAATGTTCTTCCATTTTTATCCTTCATTGGTTAGTATTGGAATTAGTTATTAATTAATGTTTAGATATTTTAATCATAAAATTAACAATAACTAATAAGGACAAAAATAAAAAGTTATGCATAATTTATCTCGTAATTTTCTTTTCTTAAGAGGTGTGAAACACCTAAACAATTCAATTAATTTGAAATGATGGGTGTATAAGAAAGTAATAAAATCACAATACAATATTTTTTTAGAATTAAAGCTTAAATAAGAGTTACATTTTTATTATCAAATATTTTTTAAAATTAAAAGGCTAATTTATTTTTGTCTGATAAACCCTTGTAATTGTATGTATTTGTACTTTGAAGCTTTTACTCTATATTTTATCAACTGTACTTTTAAACTTATTAAAACACAATATTTGAAAATCCTCTGAACATTGACCAAATCTATGTGACATAAATATTGTTGAGTTAGAAAATGTGTGAATAGACTCTCTTTCAAGCGCGTAAATACATTATATTTTATTTAAAAATATTATTTTTTATCAGAAAAAGAAAGAAAACTTATTTCTTCATTAACTCACTCCCACCCCACCCCACCCTAAATTCTCTTCTTCTCCAACACTCTTCCATCCCTAACCCTAAACTTTCTTCTCTTGTTCTTCAACAAATAACAAAACCATGCCCTTTCTTTTTTTTTCTTCGAAATCACTTGTCATACACTTTCTTTTTCTTCTTCAACCTATTCTCCTCTTTGCAACAAATCAAAGCCCCATCATTAATTTCTTTTTTCAGCCCCCATTTTCCTAAATTTTTTGTCTTTTTCATTTTAAAAGTTGAAATTTTGTTTGTGTAAGTTAGATTTTCAGAGGAGGTATGACATGAATTAACATAAAGGGTGATGGTGGGTATTGAAAAAATTGAAAACTGCATTGATAAGTTTGAGAAAGCTTGAAGAACAACATATGGATCTTATGAATTTGTGAAATTTATTCAAATTTTTTATTGAGGCTCGTTGAATTTGTGTGAGTAAACTTACAGTTGAAATTTCATGTCATGCCCCGAGCCTTCACCTTGAACATGAATGGCACTCAAGAATCATTGTTAGCTCCAAGCGAACCCTTGACCTCACTTACTTACTCAGCGGAAGTTCGAGATTAATTTACATTAAAGAATAATTGAACTGCTGAATAAATAAATTGGAATGTAATAAATAACATTCGGTGCCAAAGTGGCAACTCAAGTCTCAACTTAATTGAAAATGGAAAGTAACCAGTCATGAACCTAACATTAACTAAATCTGTCGATGAAGTCTCTAAAAATCTGAGATGGATGTCGGGACAAGACCCAACATCCTAATAAATTAAAATACTAAAAAGCAATAAAAAAGGATTCTCCGGAAAGCTAAGAGGCTCACCAACTGACTCTGAGTGCTCAACGTGATCAACAAGGCGCTAGATGTTGATCATGGTTACCTGTGTCTGCATCAAAGACGATGCATGACAACTAGCATTAGTACATTGAATGTCCGAGTATGCGAGTTGAAATGCTAAATATATCATAGGCTTGAAAAGATTCTAAAAAAACACTTACCTTGACTCTTCTTAAATCATGAATATTTAACTCAAAGTAAAAAAAATAAAACACATGCAATACATGAAAAACTTTATAACACAGTAAAAATGAATTAGTTACTTAAATAAAATGCAATAACAATAAACCCAACTTTCCTCATATAATAAAGTAAATATAGTTTATGTGAGAGTTTCTCTAACCGAAAACCCCCACTCTGAGGCTAAGTGATGATACAACGTCTTGCCCACACTGTAAGAACTGTCTTATTCTTTGTCGTCATATAGAACGCCTTAACTAAGTGGATTCACTAGTTTATGTTAAAAGCATCTTAAGGAGTAATCTAAAAAGTATGATCCTTTAATACCCTTGATGGCTACATGGTTTATGGAGAATTGGTGCTCAATACTACTCCAAAATATACTTAACTCATAGTGTTAAAACAAATTTTTTCTTTGACTTGAGATTATTACTCAAAACTTAGCTTAAAAGCTATCTTGGAAATCATTATTTTCCTTTCTTGTTCAAATGTGAAAATATTTCAAACTCTTGGAAATACTTAGTTCCCTTATAACTTTTGGAGAAATGAAATCAACTATTTACTCTTTGCTTAACTTAAAATTTAAGTCTTAAAACAAAGTTAAGACATTTGTTAAAGACTTCGAAAACATAAATGAACTCCTCTTGACTTGCTTCTTAACTTCTAAACTTGACTCTTAACTTTCCTTGAATTGAATTATGGATTCACGGATTGTGATTTCTGATGTGAAAGATCTGATGATGGATAGGAGTGTTTTTAAATTTTAGATAGTTAAACATGAGAAAAGATCAAAATTTCACAATCTGAAGGTAGGTCCGCAACATGGAGATGTATTTAAATTTTGGTCACAAATACTTTTTGAGGAAGAACGGTACGTGACCGTGATGCGATGCGAAGGCATTTTTCCCAAATCTGGAGACCAGGTCTGCGACACAGAGCCTGTGCCCAGATTCTCCTGACTAAATTTCTTCTTCGTTTTCCAGCCTCAATTCGCCCAAACTCAATACTTTTTTCCAAATTCTTTTTAGATCGATACGGATACCCAGAAATGTACCTAAGAACCTAACTCAAACCCACTCAATATGTTGACATAATGATCTTAGAAACTTCTCAATTTCATCCCAACTCAATAATAATATCAATTTCCAGAATACATATCAAGAACATCAAACTTTCAAACTCTTTTAGGACAAGTTCACACTGAGACAACATTTTTGGCGCGTGAGTGAACGAATTCAACGCTACGAAAGATTCACATACCTTGTTAGGAATCAACTGTGTGTTTCAAGGTGTAAAGATCCAGTGCGAGTAAGTTTTACCCCAATATTAAATATGCATTTCGTTTGAGTCATTAGTAGTAAAATTAAATTTATGTTGTCTTGGTTAGATATGTTCTGACAAAGTTACAAATAACTAATTTGAGCCTAAATAAAAATGTAATTTACTACAATTTAAAAAGTTGTAAGAACCTAAATTTTTTTTAAAAAAAATTAAAGAGAAAAATAACAACACATTTTTGTAAAGTTCTTAGTCACAAAAAGAAAGGTGAAAAACAATTAATATTTTTGATCTTTTATCCGGCTCTTATGGAGTTAAATTAAAGTATAATTATGATAATAATATAGAATATCATTATTTTAAATATGAAAATAATAATTTTAGGTAGAGATATTATGCAACAAAAATTATGAATTTATATAGACGAGACTGAAGGGCTATCATAAGGTATCTTAAATTTTGAAACTAAATAGTTGAAGGTTATAAATATAAAAAATTAAAGAAAATAGTTTATAATATTAATTAAAGTTAAGGTTCAATAAATATAAGTTATGTAGGTAAAAATTTTAAAATAAATAAAATAAGGGGAAAAATAAAATAATGAAGACAAAGTAATCATGAGTTATTCAGTGTTTGATGGATGTTTAAGTTTTATTAGAAAGCAAGCACATTAATTTTTTATTTTTTATTTTTTTGTATTACTTAATTGTGCTTAAAAAAATTGAAAGAAGAAAAAATACAATAAAAAAGAGAGATAATATCTTGAAAGATTGAAGTAGTAAATATTAAGACTTAATTTTTTGAAATAAAGAATATAATAATGAGTGCAAATAATTTTTGAGACATTTAAGTATAACAATATATAGAAGAGTATAATTGATATATTTATTTTTTGTATAATAATAAATAGAAAAATATGAAAAATTGTAACATTTCGAAAATTTTTAAGTTAAACTCAAGTCATCTTTTATGGTGAATAAGATTTGTGCCGAATAATTCTAAATTTTCTTAGATGTTAAGCTCAATAAAAATTCTCTATCATAAAGTTGAGTTGAAAACTTTCCATCCAAGTATGAGATTTTTTTTGGGTCAACTTCAAGCGATCATAACTTTCAGCACAAGTTAAATGGCCCATGAAGTATGTTGAATGCCTTGAATCGGACCCGTTACAACAGAAAGAACGGGGGTCTCGCCTGTTTGGGCCCAAGCCTGTTAAGGCGTAGCTTAGAACTATATATAGACGCTATGGCAAACCTTATTCTGTATTCTGTTCTTGCCTCTCCATAATAAAACTGCTCCCCCTCTTCCCCGTGGACGTAGCCAATTTATTGGTGAACCACGTAAATCTATTGTCTTGTTTTTCGCGTTTATATTTTCTCGTATTATCTCAAATTCCGCATAACAAAGTATCTTATCGAAAGTCTTTGAGTCTTCTATCCAACACTGCCAAATTTGCTAAATTTCGAATTCGAATGAAGGAGTTATCTCCGTTTAAGTGCAACCTCTCTAATTAAGGCTTATTCATCCATTTCTAGAAAGGGTATTTTGATATTTTCCTTACTCCACCAGGCTTACACATTTTACTAAACCAAGTTAAGGGGTCTAATCAGACTAAGTCAGTTTTCATCCATTCTAAAACGTTTAAGAAAGTTAGGGCAAAGTTGAAGAGGAGAAAGAGAAGAAAGTTTCAAGTGTTCATCCAGTTTTGAGGATTTTCGTCAAGAACTTAGTTTCTTTCGAGGTATGTTAGCTTTCATAGTGTTAAATTTGTTGACCCTCACGACAGTCATGTAAACTTTTACCATGAATTCGTTCTTGAAGTAGAATTATTGA-ATTCTTGAGAAGTT-CATGAGGTTTTCTTCATTCTTTAACAATGTAGTCTTGTTGAGTTCTTGAGGTACAGATTTTGCGAATGAGTGTTGTTCTTGATAGATTTTTATGTGATTTTCGGATTATGAATCTTGAAGAATTCGAGGGAAATCATTTGATTCTAGAAAAGATAAGGCTGAAAATTCAGCTAGAAAGTTCTTCGAAGTTTCTGAGCTCGGCTGGAACAACGCGCCCCCATATCAAAATGCAAAAAACAAAAGTGTTTTAACTTTTTTTTGGGGGGTTTTTAGTGCTTTTCTATGAAATTGTGAAACCCTTAATTTTTTTGGAATACAATACTTTTAACTTTTTTCGCTAGAAACGAAAATTGTAGAGCAGAAAATTCCATATGATATATTATAATGACATAACAGTCTTCATTTCACTAATTAAGTTTCTCTGTAAAATTTCTTAATGAGTTTTTTAAAAAAATTTATTTATTTATGGAGTTTTGTTTACATGGTATAACAAAAATGATTTATTTTGATAGTTTATTCTAATGATAAATTTAGGTTATTGATTTTTATTTATAGAAATTTATAAAAATTTAATGATTTTTCTAAACAAATTCTTAAAATTGATGAGATATTAACTTCAGTTTTACTTGACCGATAAATAACGAAGTCAAATCAATGATTGACATGTTAAATTTATACTACTCAATCCGCCCACATATAATTGTTATGTCGCGCTACTTTGATAACATTAAATCGATATGATGAAAACCTAGATATAAAAAAATTAGTTCAATTTTTTTTTATTTTTAAAAAAGAAAATTACAACAAATAAAAATAAATGGCTAAAGCAATACCACGTACAACGTTTAGTTGAGACTTTTGAAATATTTAGTCCATACACAATAATAATTAGAATTTCTAGTTGATTAAAATATCGCATTAATTAATTGATAAGCATATATGTTCATAAACAAACTGTCACATAATATAGCACTTTTTTTACATTATATTGTACTTAATATATTGCATATACAACTACTAAATAGAAGTTGCCCATTTCAAAGTTGAACGATCAGTGATCGATATCAAACTTAGGGACTGACCTTAAACTATCAATATGGACAACTGTAGGATTTGCTGACTTCAAGTTGCGATAAACATGGCCTTCTCCAGGACTAGGGCTTGAATGACTTTCAGACTTAACAATTCTAATACTCGATACTGATTTCAAATTGCGATGAACATGGCTGATTCCAAGACTAGGGCGATCGAAATTTCCAGTTTCAGGGCTCGGAACTGATTTCAAATTTCCAGTTCCAGGACTCGGGACTGATTTCAAATTTCCAGTTCCAGGACTCGGGACTGATTGCATGTTGTGATAAAAATTTCCAGTTCCAGGACTCGGGACTGATTTCAAATTTCCAGTTCCAGGACTCGAGACTGATTGCATGTTGTGATTAAAATTTCCAGTTTCAGGACTCGGGACTAATTTCAAATTTCCAGTTCCAGGACTCGGGATTGATTGCATGTTGTGATAGAAATTTCCAGTTCCAGGACTCGGGACTGATTTCAAATTTCCAATTCCAGGACTCGGGACTGATTGCATGTTGTGATTAAAATTTCCAGTTCCAGGACTCGGGACTGATTTCAAATTTTCAGTTCCAGGATTCGGGACTGATTGCATGTTGTGATAAAAATTTCCAGTTCCAGGACTCGGGACTGATTTCAAATTTCCAATTCCAGAACTCGGGACTGATTGCACGTTGTGATCAAAATTTCCAGTTCCAGGACTCGAGACTGATTTCAAATTGTGATCAAGATTTCCAGTTCCAGGACTCGGAACTGATTGCATGCTATGATCAAAATTACCAATTCCACGACTAGGGAATGAATCCAAATTGCGATCAACATATAGTTTGTTACCTTCTTTGCTAAATTGTTTTCTTGCTTCAAAAGATGGTGCAACACAAACTAACATAACAATCAAAAATATTGCAAAACGAGCCATTACTAATTGTTAAAATTGAGAGTGATGTCTAGATATTGGGAGGAGCAAAATGAGATCAAAGAAAGAAATGAAAGAAAAGTGAGTTTATTAAGAAAAAACGTGATATTTATAGACAACAAAAGACCAACGTTTAAGAAATCTAGACTATAGTTCATTAATTAATATAATAATTGAAATATTAATTGCTTTGTGTATTTGTCCTAGGAAGTGTCTTAGAAATTGGGTTGGTACAGATGAACTAAACTAGAGAGTACTAATAAGCCGCCTTGTTCCCATTATATTGGCCCTCTTGCTCTACGTCAAATATTTATGGTCGTGTGGATTATGATGATATATGTTCACTTTAATTGGATGTCTTCGATATCGTTTCATTTTTAATTATCAGTTGTTTTCATAAGTAATTGTATGGATTGTAATGTTTTATGCTCAATTCACTTAAATGATTTGGCACAAAATTTAAGAAATACCTTCTGACTTACATATTAAATTTACACATGACATATTTAATGTTTAATTCTTCGAAAAATAAAACATATATTGATACATCTAACGTAACTTCATCTAGCCATACACATTGTTTATGGTTTGGATTATGATGAATATATGTTCACTTTGTTCTTAAATACTACAATGGAATATGAAAAATTCCTACAAAATTATCTAAGGCGGGGTAAAAATTATCTAAACCTTTGAACAATACAAATAAACTAAAAATCATTATATTTTGAGAATAAAAAATAAATTATCACTCTCAAATAAGAACTATGATTTGTGCAAAAACCTTATAAATGATGAAATATTTAAATCGTAACTATAACAAAAGTTACCCTTTTTGTTAAATGAATTTTAATTACGTATATTTAATTAATTAATTAAATTTTGATACAAACATTGAACTTCTAAAAATTAAAAATAAGTTTTAGAGATAAACGAGGAGGCTGGGTCCAAGAAAATGCACAACATTCATAAAGGCACGTGTATAAATTATATATACAGTGAACTTGTATTTTTGAAATCTTAATTTTTTTAGTAATATGGTCAACATTTAACTTTATTTTCCATCCACAAAATGCGGTTGAAACCTTCAAGTTCATGATACATGTTGTAACAAAATTGACAGCGATCGACTTATTGCGTTACACCAATTAAAACAGTTGGAAAATAATATTTTTTATATTTGATAATTAAATAAAAATATTATCTATAAGTATTTGTATATAATATATAAGTTGAATATTATAATCTTATAGGGAGTGGCAGAATGTCTAGAGATTGCATAAGTACATTTTTTTTTGGACGAATGAGTGTATTAAAAATTTTAATAAGTGTTAATTTTGAATTATATTTAAAATATAATGAAAGCTCTTTTTCGAAAGTGGAGAAACTGTGTCAATAGCATGTTACTCAATTTGTATACTTTCTTTGTCCACAATTATTTGGCAGGTATACTAAAAATAGATATCTAAAATTAATCCTCAATTTAAATAATTAGTCACTTTTTTTCAAATTTACCCTTAATGATTATGTTGTTCAATTGAAAAGTTAGGTAGACTTTTGATATTCTTGATATGATTATTATATTAAATTTTCGTTGAGGAGTATACATAACCTTAACATGACAAACAATTATGGACGGAGAGAATATCATTTTACGTGTATATATAAATATTATTTTTTAAACGAAGAACGAACACCCCGATAACCACGTAGCTCCGCCCTTTGTTGCTATAGGAAAATCACGGCCCAAAATTTGGGACGAGACAATTATATTAAGATGTTCACTTCTAGCTCATAGCCCCTAATAGAGTCAATATGATTCAAAATATTTACTAGAAAAATAATATTCCTCATAACCTTTAAAACACTTCTAAGAAAAACTCAAATCGTTTTGATCAACTGAATATTAAAAAGATATTTTTCTTCGTATCAAATCTATGCTTAAACACGGAAAAGAGGAGTTGCATGCATGGTTGACATATTCTTTTTTATTGCTGACCTTTGCAAGCAAATGAACAATTTTCCATGCACTAAGAAAAATGGATAGTTACGTATATGACTTAATTAATTAATTAATTAACACTCAAACACTAACCAAAATGGATCAGTTACGTATTGGAGTAGTATTAAAAAAAACACTTAAGAGACCGTTGACATATTAATCTAAGCAATTATATTTTTACAAGTAACAATATAATGATTAAAAATAAATATTCATGCACTCACTAAAATAGCTTCTAAATTATTTCTCAAAAACTTTCAAATCAAAAGTCAATAATACTCTATCTATTTTATTTTGTTTGTCTTAATTTTATTTGGCATATAATTTTAAAAAATAATTTATTCTTTAAAATATAATAATCTTAAACTAAATATATATACATATTATAAATGAAATAATCCTTTAATTTCGTGGTCTTCTCTTCTGTTGTTGATAAGCATGTTGACCGGTCCGTAGTAGTGTATTTATCGAGTGAAATACTATGCACGTGAATTTATAATTTATTCGTAAACTTAGATGTTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTGTTGTTGCTAAGTCGATATCCCATATGCTTAACATGGCCAACTTGGCTGAGGAGGTTCAGATTGCCAACAGTGGGAGGGCAAAGTCGAAAAAGGGCGAACTTTCAGATGAGAGCAACTTGATGACTGAATCCGACATTGAAGAAACACTCAAGAGACTTGTAGTGAACTTGAACAAGTCTCCTCGAGAAGTTTTTAATGCTCTGAAGAATCAGACTGTGGATTTGGTCTTTACTGCTCATCCGACTCAAGCTATCCGAAGATCTTTGCTTCAGAAGCATGCAAGGTCTGGTCTTATTACACATTTTTTTACAAGTTTGAATTTTGTTTATTTATTATTTCTATCGTATTAGTCATAACTCATGTAAGTCTTCTTTTTCCCTTTTTCTTCAGTTGTTTTACTTCTTTAGTGCTGACTTTTCTACTGTTTAGGATCCGCAATTGTTTGTCTCAGTTGTATGCTAAAGACATTACACCCGACGATAAAGAGGAGCTGGATGAAGCTTTAGAGAGGGAGGTAAGTATCGGTGTGCACATTCTGGCTGCATTGATATAAATATCATTTTGCTTCTTCAAATTTTGATGCTTTTCTGTAGACTTTCAAGCTCTTAGAGCAAATATAAGGGTGCTTTAATCTCCTATCAAGTTGTCTTCATCTCTCACCCCTTATTTGGTCTATTCCCAACAGAGAGACGTCATTTCGACTAAAAGACATAGCAACCATTCCGTTGTTTCAGTTGCTAGGAAGTCAAATTTCATCTCCAAACAAAATAATTCTAATAGAACTTTAGGTTTGAGAAATGAGATGTCCTTGATATGAATACGAGGATTCCTTACAACGATGCTACCATTTTCTGTTCACCTTTTCCATTTGTCATGATACTTGTGGAAAATGTGACGGATGACTGAAGTTTAGTTTGGAAATATTGAGTAATTCTTGGCATACTATGTTACATGAATACAATCAAATTGAAGCACTGCTCAAATTTTTTTCTTTCTCACACTATACAAGCAACACTTGAGAAGAAATTATATGGGATTAAAGCTTCAAACTTGAACATTCTGTGAATTATAATGTTTGTGTAAGACGGATATGTTGTCTTCTCACAATGCATCCTGCTTACCAATACTGCAGATTCAAGCTGCTTTCCGCACTGATGAAATCAGAAGGACTCCTCCAACACCACAAGATGAAATGAGAGCTGGAATGAGTTACTTCCATGAAACAATTTGGAACGGTGTTCCGAAGTTTCTACGACGTGTAGACACAGCTCTTAAAAACATAGGGATTGATGAACGAGTTCCTTATAATGCTCCTCTCATTCAGTTCTCGTCTTGGATGGGTGGCGACCGTGATGGTACATTTCCTCTCCTCTTAACAATGTTGTTTTCAGTTACTTTAGTTGGCTGTAGAGAACGTAAAAACCTTTGGTATTTGAATCGTGATATATTTTGAAGGGAATTGGACGGAATCAAAGCTTTTTATCTTCTAAAGATATTGCTTCATAGATTCTTTTGATAGAAGATCATGTAAATACTTCTTCCATCAGTCACTCAGGATATGTCTGCCACTAAATGCAGGTAATCCAAGAGTAACTCCTGAGGTCACTAGAGATGTTTGCTTATTGGCCCGAATGATGGCAGCGAATTTGTACTACTCTCAGATAGATGATCTAATGTTTGAGGTAATTTACAACGCTTGCATAATTTTCTTTGTTGTTGATATTGAAAAGTTGCCATCATTTTCTACTCCCTATAGATGATTATAACTAGAATGTTATTTCAGTTATCTATGTGGCGTTGCAATGACGAGCTTCGTGATCGGGCAGATGAACTACACCGTTCATTAAAGAGAGACGAAAAACACTATATAGGTATCTAGCATGAATGCTAAGTAAAATAACTTGCTTGTTCCGTATAAATTTAGTAGCACTGCTCAGAGTACTGATTTAAGGTAATCTTTTGCATGTTCTCCATTTCAAGTGAGAAAAATGCACGTTGTTGTCTATGATTTTGAAAAGAAAAGATTTTCAGCGTCTGGTACTTTAGTCAGTCTTCAGAGGCTGCATGAATTTTTCTCTGTACCTCTGCTGAACAGAGCAATTGCATTACTCTTGACCTTCAAAATTTACTTTTGATGTAGAATTCTGGAAACAAGTTCCTCCAAGTGAACCATATCGTGTAATTATTGGTGATGTGAGAGATAAGCTATATCATACACGTGAGCGTACTCGCCAACTGTTATCCAATGGGTTCTCTGAAATTCCTGAGGAAGCAACATATACTAACATCAAGCAGGTGTGCAACACTTCATTATTGTTAGTATTTTTCATAACAGAGAAATCCCTAAGGGCCAGTGGCCCAGTGGCTAATGGTTTTTTGTGGATGATGGGTTCACTCCACTACTCTTATGAAATATTTCGTTATTTTGTTATCTTTCTTGTTCTTTGTTTCCCATGCCTTGTTTGTAAATGTGAAGCATCTAAAATTAAGCAGCATTGTTATTCTTTGTTCAACTTGACGTGTTATTCCTGATAAAGGGACTTGAGAAGTGAATATGCCACGTCTCTTTGTTATTTTTTAATCATTGGCATGCACATTTGTATTCTGTCAGAATTGCATGTATTTCGATTTTCTGCCCCACAAACTGAATCTTTTGCCTGAATATATAAGTGGTTGCACATTTTGTGTAGTTCTTGGAACCTCTTGAGCTCTGCTACAGATCTCTTTGTGCTTGTGGGGATCGACCAATTGCTGACGGAAGCCTTCTGGATTTTCTACGACAAGTTTCTACCTTTGGACTCTCACTTGTGAGACTTGACATAAGACAAGAGTCGGATCGGCACACTGATGTCCTTGATGCCATTACCCAGCACTTGGAAATTGGTTCATATCGAGAGTGGTCTGAGGAACGTAAACAAGAGTGGCTTCTCTCTGAACTCAGCGGCAAGCGACCTCTATTTGGACCCGACCTACCAAAAACTGAAGAAATTGATGATGTTTTGAATACATTCCATGTCATATCAGAACTTCCATCAGACTGCTTTGGGGCATACATCATCTCAATGGCCACTGCACCATCTGATGTGCTTGCTGTTGAGCTTCTACAGCGTGAATGCCACGTGAAGCAACCTTTACGGGTAGTTCCACTTTTTGAGAAATTGGATGATCTGGATGCTGCTCCTGCTGCTATTGCACGTCTTTTTTCAATTGAGTGGTACAAAAACCGCATTAATGGGAAGCAAGAAGTCATGATTGGCTACTCAGACTCTGGAAAGGATGCTGGTCGGCTGTCGGCAGCATGGCAGCTATATAAGGCTCAAGAGGAGCTTATAAAAGTTGCCAAACAATATGACGTGAAGCTAATTATGTTCCATGGCAGAGGTGGTACAGTTGGAAGAGGAGGTGGTCCTAGCCATCTTGCTATATTATCTCAGCCACCTGATACGATTCAGGGATCTCTTCGCGTAACAGTTCAAGGTGAGGTTATTGAGCAATCATTTGGGGAGGAACACTTGTGTTTTAGGACACTCCAACGTTTCACTTCTGCCACCCTAGAACATGGAATGTATCCACCTTTCCCCCCAAAGCCAGAATGGCGTGCACTTCTGGATGAAATTTCTGTTGTTGCTACAGAGAAGTATAGGTCAATAGTATTCAAGGAACCCCGATTTGTCGAGTACTTCCGCCTGGTCAGTGTGCTAGGAAAATGCAATATATTACTTATCTAACAATAGGTGTTACCAAAAGGTAACAAATATTTCTACAACTTTAACAAGTTATTTTTTCTTTTGGATCACAATTGCAGGCAACACCCGAGCTGGAGTATGGTCGAATGAACATTGGTAGCCGTCCATCAAAGCGTAAACGAAATGGAGGCATAGAAACACTTAGAGCCATTCCATGGATATTTGCATGGACCCAGACTAGGTTTCATCTGCCGGTCTGGCTTGGCTTTGGGGCAGCATTTAAGTATGCACTTAACAAGGATAAAAAAAACCTCAATATGCTGCGGGACATGCACAAAAAATGGCCATTTTTTAGAGTTACTGCTGATTTGATTGAGATGGTGTTTGCTAAGGGAGACCCCGGCATTGCTGCTTTATACGACAAGCTTCTGGTTTCTGAAGATTTGTGGTCCTTCGGTGAGCTTTTGAGGTCTGACTATGAGGAGACAAAGAGCCTCCTGCTTAAGGTAAATTACTTTTCACCAAGTTCTCGCACTTAACATACGTTTTTACTCATCATGCTTGATCGCATGATATCCATGTTATCTATGTTTCTTTTGTATAGGTTGCTGGACACAAGGAACTTCTGGAGAACGATCCCTCCTTAAAACAACGACTCAGGCTGCGTGATTCCTATATCACTACTTTAAATGTCTGCCAAGCTTACACACTAAAGAGGATTCGTGATCCAACCTACAAAGTCACTCCAAGGCCTCACATTACCAAGGAATACATAGAATCGAAACCTGCTGCTGAACTCGTGAGCCTGAACCCACAAAGCGAATATGCTCCCGGCTTGGAAGACACACTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAATACTGGTTAAATCTATTACTATGTTTTTATGTTTTAATGGTTGATAAAGTGAACATTAAGAATCATGTATCCTTGAGTTCATCTTTTTTTTTTTTTTGCAACTTCCATAAAATGGATGAATAATTATTCCCCTCTTTGTTTAGTAGCTTCTTGAATAAAATTATGATGTAAAAGAGTACTTCTCTTCATTTACCAA</genome_strand>
        <mrna_strand>AGGGGGTTGATGGCTACTCGTAATTTGGAGAAATTTGCATCTATAGATGCACAGATGAGGCTTTTGGTACCTACTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTGAAGA-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATATGCTTGTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGATGCTTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGA-TCGATTTCTTGATATTCTTGAGGATTTGCATG-G.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGGTATCA-AAAC-AACAGTCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA-ATGTTATGA-GCTTTCTGC-TGAGTATG-AAAACACGCATGATA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGAAGCTGGAGGAGCTTGGCAGTGTGTTGACAACTTTGGATCCAGGGGATTCAATTGTTGTTGCTAAGTCGATATCCCATATGCTTAACATGGCCAACTTGGCTGAGGAGGTTCAGATTGCCAACAGTGGGAGGGCAAAGTCGAAAAAGGGCGAACTTTCAGATGAGAGCAACTTGATGACTGAATCCGACATTGAAGAAACACTCAAGAGACTTGTAGTGAACTTGAACAAGTCTCCTCGAGAAGTTTTTAATGCTCTGAAGAATCAGACTGTGGATTTGGTCTTTACTGCTCATCCGACTCAAGCTATCCGAAGATCTTTGCTTCAGAAGCATGCAAG..................................................................................................................................................GATCCGCAATTGTTTGTCTCAGTTGTATGCTAAAGACATTACACCCGACGATAAAGAGGAGCTGGATGAAGCTTTAGAGAGAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGCTGCTTTCCGCACTGATGAAATCAGAAGGACTCCTCCAACACCACAAGATGAAATGAGAGCTGGAATGAGTTACTTCCATGAAACAATTTGGAACGGTGTTCCGAAGTTTCTACGACGTGTAGACACAGCTCTTAAAAACATAGGGATTGATGAACGAGTTCCTTATAATGCTCCTCTCATTCAGTTCTCGTCTTGGATGGGTGGCGACCGTGATG...............................................................................................................................................................................................................................GTAATCCAAGAGTAACTCCTGAGGTCACTAGAGATGTTTGCTTATTGGCCCGAATGATGGCAGCGAATTTGTACTACTCTCAGATAGATGATCTAATGTTTGAG.....................................................................................................TTATCTATGTGGCGTTGCAATGACGAGCTTCGTGATCGGGCAGATGAACTACACCGTTCATTAAAGAGAGACGAAAAACACTATATAG.............................................................................................................................................................................................................................................................................AATTCTGGAAACAAGTTCCTCCAAGTGAACCATATCGTGTAATTATTGGTGATGTGAGAGATAAGCTATATCATACACGTGAGCGTACTCGCCAACTGTTATCCCATGGGTTCTCTGAAATTCCTGAGGAAGCAACATATACTAACATCAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGAACCTCTTGAGCTCTGCTACAGATCTCTTTGTGCTTGTGGGGATCGACCAATTGCTGACGGAAGCCTTCTGGATTTTCTACGACAAGTTTCTACCTTTGGACTCTCACTTGTGAGACTTGACATAAGACAAGAGTCGGATCGGCACACTGATGTCCTTGATGCCATTACCCAGCACTTGGAAATTGGTTCATATCGAGAGTGGTCTGAGGAACGTAAACAAGAGTGGCTTCTCTCTGAACTCAGCGGCAAGCGACCTCTATTTGGACCCGACCTACCAAAAACTGAAGAAATTGATGATGTTTTGAATACATTCCATGTCATATCAGAACTTCCATCAGACTGCTTTGGGGCATACATCATCTCAATGGCCACTGCACCATCTGATGTGCTTGCTGTTGAGCTTCTACAGCGTGAATGCCACGTGAAGCAACCTTTACGGGTAGTTCCACTTTTTGAGAAATTGGATGATCTGGATGCTGCTCCTGCTGCTATTGCACGTCTTTTTTCAATTGAGTGGTACAAAAACCGCATTAATGGGAAGCAAGAAGTCATGATTGGCTACTCAGACTCTGGAAAGGATGCTGGTCGGCTGTCGGCAGCATGGCAGCTATATAAGGCTCAAGAGGAGCTTATAAAAGTTGCCAAACAATATGACGTGAAGCTAATTATGTTCCATGGCAGAGGTGGTACAGTTGGAAGAGGAGGTGGTCCTAGCCATCTTGCTATATTATCTCAGCCACCTGATACGATTCAGGGATCTCTTCGCGTAACAGTTCAAGGTGAGGTTATTGAGCAATCATTTGGGGAGGAACACTTGTGTTTTAGGACACTCCAACGTTTCACTTCTGCCACCCTAGAACATGGAATGTATCCACCTTTCCCCCCAAAGCCAGAATGGCGTGCACTTCTGGATGAAATTTCTGTTGTTGCTACAGAGAAGTATAGGTCAATAGTATTCAAGGAACCCCGATTTGTCGAGTACTTCCGCCTG....................................................................................................................GCAACACCCGAGCTGGAGTATGGTCGAATGAACATTGGTAGCCGTCCATCAAAGCGTAAACGAAATGGAGGCATAGAAACACTTAGAGCCATTCCATGGATATTTGCATGGACCCAGACTAGGTTTCATCTGCCGGTCTGGCTTGGCTTTGGGGCAGCATTTAAGTATGCACTTAACAAGGATAAAAAAAACCTCAATATGCTGCGGGACATGCACAAAAAATGGCCATTTTTTAGAGTTACTGCTGATTTGATTGAGATGGTGTTTGCTAAGGGAGACCCCGGCATTGCTGCTTTATACGACAAGCTTCTGGTTTCTGAAGATTTGTGGTCCTTCGGTGAGCTTTTGAGGTCTGACTATGAGGAGACAAAGAGCCTCCTGCTTAAG..................................................................................................GTTGCTGGACACAAGGAACTTCTGGAGAACGATCCCTCCTTAAAACAACGACTCAGGCTGCGTGATTCCTATATCACTACTTTAAATGTCTGCCAAGCTTACACACTAAAGAGGATTCGTGATCCAACCTACAAAGTCACTCCAAGGCCTCACATTACCAAGGAATACATAGAATCGAAACCTGCTGCTGAACTCGTGAGCCTGAACCCACAAAGCGAATATGCTCCCGGCTTGGAAGACACACTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAATACTGGTTAAATCTATTACTATGTTTTTATGTTTTAATGGTTGATAAAGTGAACATTAAGAATCATGTATCCTTGAGTTCATCTTTTTTTTTTTTTTGCAACTTCCATAAAATGGATGAATAATTATTCCCCTCTTTGTTTAGTAGCTTCTTGAATAAAATTATGATGTAAAAGAGTACTTCTCTTCATTTACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="84486" stop="85733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84786" g_stop="85433" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84786" e_stop="85433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATCAAAAACTGGGAGTCTTGATAAACAGGTGGAGTTTCAAGTCATTCAGAATGAGAGCGATTTGAAAGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTTCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTAAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCC-TCTACTTACAAAGAAGCCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATAGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGTTTTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGATGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTACACATTAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="84487" stop="85470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84787" g_stop="85170" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84787" e_stop="85170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCAAAAACTGGGAGTCTTGATAAACAGGTGGAGTTTCAAGTCATTCAGAATGAGAGCGATTTGAAAGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTTCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTAAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCC-TCTACTTACAAAGAAGCCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATAGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGTTTTGGTCATACAGCCTTCGGGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="85144" stop="86551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85444" g_stop="86251" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85444" e_stop="86251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTACAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAAGGATGATACATTCATCTATCTGATGCTTTATGTACATGATATGCTGATAGCTGCAAAGAAGAAGTATGATATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTCTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCTATTGATACCCCCAGTGCTGCCAATATCCATCTCACTACCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCAGGAGTCCCTTATGCTAGTGCCATAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTTCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCTGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E705183" ref_strand="+" ref_description="SGN-E705183 [FA26BF05]">
      <seq>gatatcagaaggactcctccaacaccacaagatgaaatgagagctggaatgagttacttccatgaaacaatttggaacggtgttccgaagtttctacgacgtgtagacacagctcttaaaaacatagggattgatgaacgagtgccttataatgctcctctcattcagttctcgtcttggatgggtggcgaccgtgatggtaatccaagagtaactcctgaggtcactagagatgtttgcttattggcccgaatgatggcagcgaatttgtactactctcagatagatgatctaatgtttgagttatctatgtggcgttgcaatgacgagcttcgtgatcgggcagatgaactacaccgttcattaaagagagacgaaaaacactatatagaattctggaaacaagttcctccaagtgaaccatatcgtgtaattattggtgatgtgagagataagctatatcatacacgtgagcgtactcgccaactgttatccaatgggttctctgaaattcctgaggaagcaacatatactaacatcaagcagttcttggaacctcttgagctctgctacagatctctttgtgcttgtggggatcgaccaattgctgacggaagccttctggattttctacgacaagtttctacctttggactctcacttgtgagacttgacataagacaagagtcggatcggcacactgatgtccttgatgccattacccagcacttggaaattggttcatatcgagagtggtctgaggaacgtaaacaagagtggcttctctctgaactcagcggcaagcgacctctatttggacccgacctaccaaaactgaagaaattgatgatgttttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="97915" stop="100362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98215" g_stop="98413" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98414" i_stop="98636" i_length="223">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98637" g_stop="98740" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="303" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98741" i_stop="98841" i_length="101">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98842" g_stop="98929" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="391" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98930" i_stop="99198" i_length="269">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.684" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99199" g_stop="99353" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="546" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99354" i_stop="99748" i_length="395">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.461" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99749" g_stop="100062" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="859" r_length="313" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E705183" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98215" e_stop="98413"/>
          <exon e_start="98637" e_stop="98740"/>
          <exon e_start="98842" e_stop="98929"/>
          <exon e_start="99199" e_stop="99353"/>
          <exon e_start="99749" e_stop="100062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCAGAAGGACTCCTCCAACACCACAAGATGAAATGAGAGCTGGAATGAGTTACTTCCATGAAACAATTTGGAACGGTGTTCCGAAGTTTCTACGACGTGTAGACACAGCTCTTAAAAACATAGGGATTGATGAACGAGTTCCTTATAATGCTCCTCTCATTCAGTTCTCGTCTTGGATGGGTGGCGACCGTGATGGTACATTTCCTCTCCTCTTAACAATGTTGTTTTCAGTTACTTTAGTTGGCTGTAGAGAACGTAAAAACCTTTGGTATTTGAATCGTGATATATTTTGAAGGGAATTGGACGGAATCAAAGCTTTTTATCTTCTAAAGATATTGCTTCATAGATTCTTTTGATAGAAGATCATGTAAATACTTCTTCCATCAGTCACTCAGGATATGTCTGCCACTAAATGCAGGTAATCCAAGAGTAACTCCTGAGGTCACTAGAGATGTTTGCTTATTGGCCCGAATGATGGCAGCGAATTTGTACTACTCTCAGATAGATGATCTAATGTTTGAGGTAATTTACAACGCTTGCATAATTTTCTTTGTTGTTGATATTGAAAAGTTGCCATCATTTTCTACTCCCTATAGATGATTATAACTAGAATGTTATTTCAGTTATCTATGTGGCGTTGCAATGACGAGCTTCGTGATCGGGCAGATGAACTACACCGTTCATTAAAGAGAGACGAAAAACACTATATAGGTATCTAGCATGAATGCTAAGTAAAATAACTTGCTTGTTCCGTATAAATTTAGTAGCACTGCTCAGAGTACTGATTTAAGGTAATCTTTTGCATGTTCTCCATTTCAAGTGAGAAAAATGCACGTTGTTGTCTATGATTTTGAAAAGAAAAGATTTTCAGCGTCTGGTACTTTAGTCAGTCTTCAGAGGCTGCATGAATTTTTCTCTGTACCTCTGCTGAACAGAGCAATTGCATTACTCTTGACCTTCAAAATTTACTTTTGATGTAGAATTCTGGAAACAAGTTCCTCCAAGTGAACCATATCGTGTAATTATTGGTGATGTGAGAGATAAGCTATATCATACACGTGAGCGTACTCGCCAACTGTTATCCAATGGGTTCTCTGAAATTCCTGAGGAAGCAACATATACTAACATCAAGCAGGTGTGCAACACTTCATTATTGTTAGTATTTTTCATAACAGAGAAATCCCTAAGGGCCAGTGGCCCAGTGGCTAATGGTTTTTTGTGGATGATGGGTTCACTCCACTACTCTTATGAAATATTTCGTTATTTTGTTATCTTTCTTGTTCTTTGTTTCCCATGCCTTGTTTGTAAATGTGAAGCATCTAAAATTAAGCAGCATTGTTATTCTTTGTTCAACTTGACGTGTTATTCCTGATAAAGGGACTTGAGAAGTGAATATGCCACGTCTCTTTGTTATTTTTTAATCATTGGCATGCACATTTGTATTCTGTCAGAATTGCATGTATTTCGATTTTCTGCCCCACAAACTGAATCTTTTGCCTGAATATATAAGTGGTTGCACATTTTGTGTAGTTCTTGGAACCTCTTGAGCTCTGCTACAGATCTCTTTGTGCTTGTGGGGATCGACCAATTGCTGACGGAAGCCTTCTGGATTTTCTACGACAAGTTTCTACCTTTGGACTCTCACTTGTGAGACTTGACATAAGACAAGAGTCGGATCGGCACACTGATGTCCTTGATGCCATTACCCAGCACTTGGAAATTGGTTCATATCGAGAGTGGTCTGAGGAACGTAAACAAGAGTGGCTTCTCTCTGAACTCAGCGGCAAGCGACCTCTATTTGGACCCGACCTACCAAAAACTGAAGAAATTGATGATGTTTTGAA</genome_strand>
        <mrna_strand>GATATCAGAAGGACTCCTCCAACACCACAAGATGAAATGAGAGCTGGAATGAGTTACTTCCATGAAACAATTTGGAACGGTGTTCCGAAGTTTCTACGACGTGTAGACACAGCTCTTAAAAACATAGGGATTGATGAACGAGTGCCTTATAATGCTCCTCTCATTCAGTTCTCGTCTTGGATGGGTGGCGACCGTGATG...............................................................................................................................................................................................................................GTAATCCAAGAGTAACTCCTGAGGTCACTAGAGATGTTTGCTTATTGGCCCGAATGATGGCAGCGAATTTGTACTACTCTCAGATAGATGATCTAATGTTTGAG.....................................................................................................TTATCTATGTGGCGTTGCAATGACGAGCTTCGTGATCGGGCAGATGAACTACACCGTTCATTAAAGAGAGACGAAAAACACTATATAG.............................................................................................................................................................................................................................................................................AATTCTGGAAACAAGTTCCTCCAAGTGAACCATATCGTGTAATTATTGGTGATGTGAGAGATAAGCTATATCATACACGTGAGCGTACTCGCCAACTGTTATCCAATGGGTTCTCTGAAATTCCTGAGGAAGCAACATATACTAACATCAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGAACCTCTTGAGCTCTGCTACAGATCTCTTTGTGCTTGTGGGGATCGACCAATTGCTGACGGAAGCCTTCTGGATTTTCTACGACAAGTTTCTACCTTTGGACTCTCACTTGTGAGACTTGACATAAGACAAGAGTCGGATCGGCACACTGATGTCCTTGATGCCATTACCCAGCACTTGGAAATTGGTTCATATCGAGAGTGGTCTGAGGAACGTAAACAAGAGTGGCTTCTCTCTGAACTCAGCGGCAAGCGACCTCTATTTGGACCCGACCTACC-AAAACTGAAGAAATTGATGATGTTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E249895" ref_strand="+" ref_description="SGN-E249895 [cLEF-57-D24]">
      <seq>atgagttacttccatgaaacaatttggaacggtgttccgaagtttctacgacgtgtagacacagctcttaaaaacatagggattgatgaacgagttccttataatgctcctctcattcagttctcgtcttggatgggtggcgaccgtgatggtaatccaagagtaactcctgaggtcactagagatgtttgcttattggcccgaatgatggcagcgaatttgtactactctcagatagatgatctaatgtttgagttatctatgtggcgttgcaatgacgagcttcgtgatcgggcagatgaactacaccgttcattaaagagagacgaaaaacactatatagaattctggaaacaagttcctccaagtgaaccatatcgtgtaattattggtgatgtgagagataagctatatcatacacgtgagcgtactcgccaactgttatccaatgggttctctgaaattcctgaggaagcaacatatactaacatcaagcagttcttggaacctcttgagctctgctacagatctctttgtgcttgtggggatcgaccaattgctgacggaagccttctggattttctacgacaagtttctacctttggactctcacttgtgagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="97963" stop="100172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98263" g_stop="98413" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98414" i_stop="98636" i_length="223">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98637" g_stop="98740" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="255" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98741" i_stop="98841" i_length="101">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98842" g_stop="98929" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="343" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98930" i_stop="99198" i_length="269">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.684" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99199" g_stop="99353" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="498" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99354" i_stop="99748" i_length="395">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.461" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99749" g_stop="99872" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="622" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E249895" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98263" e_stop="98413"/>
          <exon e_start="98637" e_stop="98740"/>
          <exon e_start="98842" e_stop="98929"/>
          <exon e_start="99199" e_stop="99353"/>
          <exon e_start="99749" e_stop="99872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGTTACTTCCATGAAACAATTTGGAACGGTGTTCCGAAGTTTCTACGACGTGTAGACACAGCTCTTAAAAACATAGGGATTGATGAACGAGTTCCTTATAATGCTCCTCTCATTCAGTTCTCGTCTTGGATGGGTGGCGACCGTGATGGTACATTTCCTCTCCTCTTAACAATGTTGTTTTCAGTTACTTTAGTTGGCTGTAGAGAACGTAAAAACCTTTGGTATTTGAATCGTGATATATTTTGAAGGGAATTGGACGGAATCAAAGCTTTTTATCTTCTAAAGATATTGCTTCATAGATTCTTTTGATAGAAGATCATGTAAATACTTCTTCCATCAGTCACTCAGGATATGTCTGCCACTAAATGCAGGTAATCCAAGAGTAACTCCTGAGGTCACTAGAGATGTTTGCTTATTGGCCCGAATGATGGCAGCGAATTTGTACTACTCTCAGATAGATGATCTAATGTTTGAGGTAATTTACAACGCTTGCATAATTTTCTTTGTTGTTGATATTGAAAAGTTGCCATCATTTTCTACTCCCTATAGATGATTATAACTAGAATGTTATTTCAGTTATCTATGTGGCGTTGCAATGACGAGCTTCGTGATCGGGCAGATGAACTACACCGTTCATTAAAGAGAGACGAAAAACACTATATAGGTATCTAGCATGAATGCTAAGTAAAATAACTTGCTTGTTCCGTATAAATTTAGTAGCACTGCTCAGAGTACTGATTTAAGGTAATCTTTTGCATGTTCTCCATTTCAAGTGAGAAAAATGCACGTTGTTGTCTATGATTTTGAAAAGAAAAGATTTTCAGCGTCTGGTACTTTAGTCAGTCTTCAGAGGCTGCATGAATTTTTCTCTGTACCTCTGCTGAACAGAGCAATTGCATTACTCTTGACCTTCAAAATTTACTTTTGATGTAGAATTCTGGAAACAAGTTCCTCCAAGTGAACCATATCGTGTAATTATTGGTGATGTGAGAGATAAGCTATATCATACACGTGAGCGTACTCGCCAACTGTTATCCAATGGGTTCTCTGAAATTCCTGAGGAAGCAACATATACTAACATCAAGCAGGTGTGCAACACTTCATTATTGTTAGTATTTTTCATAACAGAGAAATCCCTAAGGGCCAGTGGCCCAGTGGCTAATGGTTTTTTGTGGATGATGGGTTCACTCCACTACTCTTATGAAATATTTCGTTATTTTGTTATCTTTCTTGTTCTTTGTTTCCCATGCCTTGTTTGTAAATGTGAAGCATCTAAAATTAAGCAGCATTGTTATTCTTTGTTCAACTTGACGTGTTATTCCTGATAAAGGGACTTGAGAAGTGAATATGCCACGTCTCTTTGTTATTTTTTAATCATTGGCATGCACATTTGTATTCTGTCAGAATTGCATGTATTTCGATTTTCTGCCCCACAAACTGAATCTTTTGCCTGAATATATAAGTGGTTGCACATTTTGTGTAGTTCTTGGAACCTCTTGAGCTCTGCTACAGATCTCTTTGTGCTTGTGGGGATCGACCAATTGCTGACGGAAGCCTTCTGGATTTTCTACGACAAGTTTCTACCTTTGGACTCTCACTTGTGAGAC</genome_strand>
        <mrna_strand>ATGAGTTACTTCCATGAAACAATTTGGAACGGTGTTCCGAAGTTTCTACGACGTGTAGACACAGCTCTTAAAAACATAGGGATTGATGAACGAGTTCCTTATAATGCTCCTCTCATTCAGTTCTCGTCTTGGATGGGTGGCGACCGTGATG...............................................................................................................................................................................................................................GTAATCCAAGAGTAACTCCTGAGGTCACTAGAGATGTTTGCTTATTGGCCCGAATGATGGCAGCGAATTTGTACTACTCTCAGATAGATGATCTAATGTTTGAG.....................................................................................................TTATCTATGTGGCGTTGCAATGACGAGCTTCGTGATCGGGCAGATGAACTACACCGTTCATTAAAGAGAGACGAAAAACACTATATAG.............................................................................................................................................................................................................................................................................AATTCTGGAAACAAGTTCCTCCAAGTGAACCATATCGTGTAATTATTGGTGATGTGAGAGATAAGCTATATCATACACGTGAGCGTACTCGCCAACTGTTATCCAATGGGTTCTCTGAAATTCCTGAGGAAGCAACATATACTAACATCAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGAACCTCTTGAGCTCTGCTACAGATCTCTTTGTGCTTGTGGGGATCGACCAATTGCTGACGGAAGCCTTCTGGATTTTCTACGACAAGTTTCTACCTTTGGACTCTCACTTGTGAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E707109" ref_strand="+" ref_description="SGN-E707109 [FA32AD03]">
      <seq>cgatgagtgccttataatgctcctctcattcagttctcgtcttggatgggtggcgaccgtgatggtaatccaagagtaactcctgaggtcactagagatgtttgcttattggcccgaatgatggcagcgaatttgtactactctcagatagatgatctaatgtttgagttatctatgtggcgttgcaatgacgagcttcgtgatcgggcagatgaactacaccgttcattaaagagagacgaaaaacactatatagaattctggaaacaagttcctccaagtgaaccatatcgtgtaattattggtgatgtgagagataagctatatcatacacgtgagcgtactcgccaactgttatccaatgggttctctgaaattcctgaggaagcaacatatactaacatcaagcagttcttggaacctcttgagctctgctacagatctctttgtgcttgtggggatcgaccaattgctgacggaagccttctggattttctacgacaagtttctacctttggactctcacttgtgagacttgacataagacaagagtcggatcggcacactgatgtccttgatgccattacccagcacttggaaattggttcatatcgagagtggtctgaggaacgtaaacaagagtggcttctctctgaactcagcggcaagcgacctctatttggacccgacctaccaaaaactgaagaaattgatgatgttttgaatacattccatgtcatatcagaacttccatcagactgctttggggcatacatcatctcaatggccactgcaccatctgatgtgcttgctgttgagcttctacagcgtgaatgccacgtgaagcaacctttaccggtagttccactttttgagaaattggatgatctggatgctgctcctgctgctattgcacgtctttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="98052" stop="100562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98350" g_stop="98413" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98414" i_stop="98636" i_length="223">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98637" g_stop="98740" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="168" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98741" i_stop="98841" i_length="101">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98842" g_stop="98929" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="256" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98930" i_stop="99198" i_length="269">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.684" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99199" g_stop="99353" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="411" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99354" i_stop="99748" i_length="395">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.461" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99749" g_stop="100262" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="925" r_length="514" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E707109" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>925</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98350" e_stop="98413"/>
          <exon e_start="98637" e_stop="98740"/>
          <exon e_start="98842" e_stop="98929"/>
          <exon e_start="99199" e_stop="99353"/>
          <exon e_start="99749" e_stop="100262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGAGTTCCTTATAATGCTCCTCTCATTCAGTTCTCGTCTTGGATGGGTGGCGACCGTGATGGTACATTTCCTCTCCTCTTAACAATGTTGTTTTCAGTTACTTTAGTTGGCTGTAGAGAACGTAAAAACCTTTGGTATTTGAATCGTGATATATTTTGAAGGGAATTGGACGGAATCAAAGCTTTTTATCTTCTAAAGATATTGCTTCATAGATTCTTTTGATAGAAGATCATGTAAATACTTCTTCCATCAGTCACTCAGGATATGTCTGCCACTAAATGCAGGTAATCCAAGAGTAACTCCTGAGGTCACTAGAGATGTTTGCTTATTGGCCCGAATGATGGCAGCGAATTTGTACTACTCTCAGATAGATGATCTAATGTTTGAGGTAATTTACAACGCTTGCATAATTTTCTTTGTTGTTGATATTGAAAAGTTGCCATCATTTTCTACTCCCTATAGATGATTATAACTAGAATGTTATTTCAGTTATCTATGTGGCGTTGCAATGACGAGCTTCGTGATCGGGCAGATGAACTACACCGTTCATTAAAGAGAGACGAAAAACACTATATAGGTATCTAGCATGAATGCTAAGTAAAATAACTTGCTTGTTCCGTATAAATTTAGTAGCACTGCTCAGAGTACTGATTTAAGGTAATCTTTTGCATGTTCTCCATTTCAAGTGAGAAAAATGCACGTTGTTGTCTATGATTTTGAAAAGAAAAGATTTTCAGCGTCTGGTACTTTAGTCAGTCTTCAGAGGCTGCATGAATTTTTCTCTGTACCTCTGCTGAACAGAGCAATTGCATTACTCTTGACCTTCAAAATTTACTTTTGATGTAGAATTCTGGAAACAAGTTCCTCCAAGTGAACCATATCGTGTAATTATTGGTGATGTGAGAGATAAGCTATATCATACACGTGAGCGTACTCGCCAACTGTTATCCAATGGGTTCTCTGAAATTCCTGAGGAAGCAACATATACTAACATCAAGCAGGTGTGCAACACTTCATTATTGTTAGTATTTTTCATAACAGAGAAATCCCTAAGGGCCAGTGGCCCAGTGGCTAATGGTTTTTTGTGGATGATGGGTTCACTCCACTACTCTTATGAAATATTTCGTTATTTTGTTATCTTTCTTGTTCTTTGTTTCCCATGCCTTGTTTGTAAATGTGAAGCATCTAAAATTAAGCAGCATTGTTATTCTTTGTTCAACTTGACGTGTTATTCCTGATAAAGGGACTTGAGAAGTGAATATGCCACGTCTCTTTGTTATTTTTTAATCATTGGCATGCACATTTGTATTCTGTCAGAATTGCATGTATTTCGATTTTCTGCCCCACAAACTGAATCTTTTGCCTGAATATATAAGTGGTTGCACATTTTGTGTAGTTCTTGGAACCTCTTGAGCTCTGCTACAGATCTCTTTGTGCTTGTGGGGATCGACCAATTGCTGACGGAAGCCTTCTGGATTTTCTACGACAAGTTTCTACCTTTGGACTCTCACTTGTGAGACTTGACATAAGACAAGAGTCGGATCGGCACACTGATGTCCTTGATGCCATTACCCAGCACTTGGAAATTGGTTCATATCGAGAGTGGTCTGAGGAACGTAAACAAGAGTGGCTTCTCTCTGAACTCAGCGGCAAGCGACCTCTATTTGGACCCGACCTACCAAAAACTGAAGAAATTGATGATGTTTTGAATACATTCCATGTCATATCAGAACTTCCATCAGACTGCTTTGGGGCATACATCATCTCAATGGCCACTGCACCATCTGATGTGCTTGCTGTTGAGCTTCTACAGCGTGAATGCCACGTGAAGCAACCTTTACGGGTAGTTCCACTTTTTGAGAAATTGGATGATCTGGATGCTGCTCCTGCTGCTATTGCACGTCTTTTTT</genome_strand>
        <mrna_strand>CGATGAGTGCCTTATAATGCTCCTCTCATTCAGTTCTCGTCTTGGATGGGTGGCGACCGTGATG...............................................................................................................................................................................................................................GTAATCCAAGAGTAACTCCTGAGGTCACTAGAGATGTTTGCTTATTGGCCCGAATGATGGCAGCGAATTTGTACTACTCTCAGATAGATGATCTAATGTTTGAG.....................................................................................................TTATCTATGTGGCGTTGCAATGACGAGCTTCGTGATCGGGCAGATGAACTACACCGTTCATTAAAGAGAGACGAAAAACACTATATAG.............................................................................................................................................................................................................................................................................AATTCTGGAAACAAGTTCCTCCAAGTGAACCATATCGTGTAATTATTGGTGATGTGAGAGATAAGCTATATCATACACGTGAGCGTACTCGCCAACTGTTATCCAATGGGTTCTCTGAAATTCCTGAGGAAGCAACATATACTAACATCAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGAACCTCTTGAGCTCTGCTACAGATCTCTTTGTGCTTGTGGGGATCGACCAATTGCTGACGGAAGCCTTCTGGATTTTCTACGACAAGTTTCTACCTTTGGACTCTCACTTGTGAGACTTGACATAAGACAAGAGTCGGATCGGCACACTGATGTCCTTGATGCCATTACCCAGCACTTGGAAATTGGTTCATATCGAGAGTGGTCTGAGGAACGTAAACAAGAGTGGCTTCTCTCTGAACTCAGCGGCAAGCGACCTCTATTTGGACCCGACCTACCAAAAACTGAAGAAATTGATGATGTTTTGAATACATTCCATGTCATATCAGAACTTCCATCAGACTGCTTTGGGGCATACATCATCTCAATGGCCACTGCACCATCTGATGTGCTTGCTGTTGAGCTTCTACAGCGTGAATGCCACGTGAAGCAACCTTTACCGGTAGTTCCACTTTTTGAGAAATTGGATGATCTGGATGCTGCTCCTGCTGCTATTGCACGTCTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E263645" ref_strand="+" ref_description="SGN-E263645 [cLEG-60-A17]">
      <seq>gatggtaatccaagagtaactcctgaggtcactagagatgtttgcttattggcccgaatgatggcagcgaatttgtactactctcagatagatgatctaatgtttgagttatctatgtggcgttgcaatgacgagcttcgtgatcgggcagatgaactacaccgttcattaaagagagacgaaaaacactatatagaattctggaaacaagttcctccaagtgaaccatatcgtgtaattattggtgatgtgagagataagctatatcatacacgtgagcgtactcgccaactgttatccaatgggttctctgaaattcctgaggaagcaacatatactaacatcaagcagttcttggaacctcttgagctctgctacagatctctttgtgcttgtggggatcgaccaattgctgacggaagccttctggattttctacgacaagtttctacctttggactctcacttgtgagacttgacataagacaagagtcggatcggcacactgatgtccttgatgccattacccagcacttggaaattggttcatatcgagagtggtctgaggaacgtaaacaagagtggcttctctctgaactcagcggcaagcgacctctatttggacccgacctaccaaaaactgaagaaattgatgatgttttgaatacattccatgtcatatcagaacttccatcagactgctttggggcatacatcatctcaatggccactgcaccatctgatgtgcttgctgntgagcttctacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="98336" stop="100466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98410" g_stop="98413" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98414" i_stop="98636" i_length="223">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98637" g_stop="98740" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="108" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98741" i_stop="98841" i_length="101">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98842" g_stop="98929" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="196" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98930" i_stop="99198" i_length="269">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.684" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99199" g_stop="99353" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="351" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99354" i_stop="99748" i_length="395">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.461" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99749" g_stop="100166" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="769" r_length="418" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E263645" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98410" e_stop="98413"/>
          <exon e_start="98637" e_stop="98740"/>
          <exon e_start="98842" e_stop="98929"/>
          <exon e_start="99199" e_stop="99353"/>
          <exon e_start="99749" e_stop="100166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGTACATTTCCTCTCCTCTTAACAATGTTGTTTTCAGTTACTTTAGTTGGCTGTAGAGAACGTAAAAACCTTTGGTATTTGAATCGTGATATATTTTGAAGGGAATTGGACGGAATCAAAGCTTTTTATCTTCTAAAGATATTGCTTCATAGATTCTTTTGATAGAAGATCATGTAAATACTTCTTCCATCAGTCACTCAGGATATGTCTGCCACTAAATGCAGGTAATCCAAGAGTAACTCCTGAGGTCACTAGAGATGTTTGCTTATTGGCCCGAATGATGGCAGCGAATTTGTACTACTCTCAGATAGATGATCTAATGTTTGAGGTAATTTACAACGCTTGCATAATTTTCTTTGTTGTTGATATTGAAAAGTTGCCATCATTTTCTACTCCCTATAGATGATTATAACTAGAATGTTATTTCAGTTATCTATGTGGCGTTGCAATGACGAGCTTCGTGATCGGGCAGATGAACTACACCGTTCATTAAAGAGAGACGAAAAACACTATATAGGTATCTAGCATGAATGCTAAGTAAAATAACTTGCTTGTTCCGTATAAATTTAGTAGCACTGCTCAGAGTACTGATTTAAGGTAATCTTTTGCATGTTCTCCATTTCAAGTGAGAAAAATGCACGTTGTTGTCTATGATTTTGAAAAGAAAAGATTTTCAGCGTCTGGTACTTTAGTCAGTCTTCAGAGGCTGCATGAATTTTTCTCTGTACCTCTGCTGAACAGAGCAATTGCATTACTCTTGACCTTCAAAATTTACTTTTGATGTAGAATTCTGGAAACAAGTTCCTCCAAGTGAACCATATCGTGTAATTATTGGTGATGTGAGAGATAAGCTATATCATACACGTGAGCGTACTCGCCAACTGTTATCCAATGGGTTCTCTGAAATTCCTGAGGAAGCAACATATACTAACATCAAGCAGGTGTGCAACACTTCATTATTGTTAGTATTTTTCATAACAGAGAAATCCCTAAGGGCCAGTGGCCCAGTGGCTAATGGTTTTTTGTGGATGATGGGTTCACTCCACTACTCTTATGAAATATTTCGTTATTTTGTTATCTTTCTTGTTCTTTGTTTCCCATGCCTTGTTTGTAAATGTGAAGCATCTAAAATTAAGCAGCATTGTTATTCTTTGTTCAACTTGACGTGTTATTCCTGATAAAGGGACTTGAGAAGTGAATATGCCACGTCTCTTTGTTATTTTTTAATCATTGGCATGCACATTTGTATTCTGTCAGAATTGCATGTATTTCGATTTTCTGCCCCACAAACTGAATCTTTTGCCTGAATATATAAGTGGTTGCACATTTTGTGTAGTTCTTGGAACCTCTTGAGCTCTGCTACAGATCTCTTTGTGCTTGTGGGGATCGACCAATTGCTGACGGAAGCCTTCTGGATTTTCTACGACAAGTTTCTACCTTTGGACTCTCACTTGTGAGACTTGACATAAGACAAGAGTCGGATCGGCACACTGATGTCCTTGATGCCATTACCCAGCACTTGGAAATTGGTTCATATCGAGAGTGGTCTGAGGAACGTAAACAAGAGTGGCTTCTCTCTGAACTCAGCGGCAAGCGACCTCTATTTGGACCCGACCTACCAAAAACTGAAGAAATTGATGATGTTTTGAATACATTCCATGTCATATCAGAACTTCCATCAGACTGCTTTGGGGCATACATCATCTCAATGGCCACTGCACCATCTGATGTGCTTGCTGTTGAGCTTCTACAGC</genome_strand>
        <mrna_strand>GATG...............................................................................................................................................................................................................................GTAATCCAAGAGTAACTCCTGAGGTCACTAGAGATGTTTGCTTATTGGCCCGAATGATGGCAGCGAATTTGTACTACTCTCAGATAGATGATCTAATGTTTGAG.....................................................................................................TTATCTATGTGGCGTTGCAATGACGAGCTTCGTGATCGGGCAGATGAACTACACCGTTCATTAAAGAGAGACGAAAAACACTATATAG.............................................................................................................................................................................................................................................................................AATTCTGGAAACAAGTTCCTCCAAGTGAACCATATCGTGTAATTATTGGTGATGTGAGAGATAAGCTATATCATACACGTGAGCGTACTCGCCAACTGTTATCCAATGGGTTCTCTGAAATTCCTGAGGAAGCAACATATACTAACATCAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGAACCTCTTGAGCTCTGCTACAGATCTCTTTGTGCTTGTGGGGATCGACCAATTGCTGACGGAAGCCTTCTGGATTTTCTACGACAAGTTTCTACCTTTGGACTCTCACTTGTGAGACTTGACATAAGACAAGAGTCGGATCGGCACACTGATGTCCTTGATGCCATTACCCAGCACTTGGAAATTGGTTCATATCGAGAGTGGTCTGAGGAACGTAAACAAGAGTGGCTTCTCTCTGAACTCAGCGGCAAGCGACCTCTATTTGGACCCGACCTACCAAAAACTGAAGAAATTGATGATGTTTTGAATACATTCCATGTCATATCAGAACTTCCATCAGACTGCTTTGGGGCATACATCATCTCAATGGCCACTGCACCATCTGATGTGCTTGCTGNTGAGCTTCTACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E249665" ref_strand="+" ref_description="SGN-E249665 [cLEF-56-J3]">
      <seq>actagagatgtttgcttattggcccgaatgatggcagcgaatttgtactactctcagatagatgatctaatgtttgagttatctatgtggcgttgcaatgacgagcttcgtgatcgggcagatgaactacaccgttcattaaagagagacgaaaaacactatatagaattctggaaacaagttcctccaagtgaaccatatcgtgtaattattggtgatgtgagagataagctatatcatacacgtgagcgtactcgccaactgttatccaatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="98363" stop="99608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98663" g_stop="98740" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98741" i_stop="98841" i_length="101">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98842" g_stop="98929" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="166" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98930" i_stop="99198" i_length="269">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.684" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99199" g_stop="99308" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="276" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E249665" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98663" e_stop="98740"/>
          <exon e_start="98842" e_stop="98929"/>
          <exon e_start="99199" e_stop="99308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAGAGATGTTTGCTTATTGGCCCGAATGATGGCAGCGAATTTGTACTACTCTCAGATAGATGATCTAATGTTTGAGGTAATTTACAACGCTTGCATAATTTTCTTTGTTGTTGATATTGAAAAGTTGCCATCATTTTCTACTCCCTATAGATGATTATAACTAGAATGTTATTTCAGTTATCTATGTGGCGTTGCAATGACGAGCTTCGTGATCGGGCAGATGAACTACACCGTTCATTAAAGAGAGACGAAAAACACTATATAGGTATCTAGCATGAATGCTAAGTAAAATAACTTGCTTGTTCCGTATAAATTTAGTAGCACTGCTCAGAGTACTGATTTAAGGTAATCTTTTGCATGTTCTCCATTTCAAGTGAGAAAAATGCACGTTGTTGTCTATGATTTTGAAAAGAAAAGATTTTCAGCGTCTGGTACTTTAGTCAGTCTTCAGAGGCTGCATGAATTTTTCTCTGTACCTCTGCTGAACAGAGCAATTGCATTACTCTTGACCTTCAAAATTTACTTTTGATGTAGAATTCTGGAAACAAGTTCCTCCAAGTGAACCATATCGTGTAATTATTGGTGATGTGAGAGATAAGCTATATCATACACGTGAGCGTACTCGCCAACTGTTATCCAATGGG</genome_strand>
        <mrna_strand>ACTAGAGATGTTTGCTTATTGGCCCGAATGATGGCAGCGAATTTGTACTACTCTCAGATAGATGATCTAATGTTTGAG.....................................................................................................TTATCTATGTGGCGTTGCAATGACGAGCTTCGTGATCGGGCAGATGAACTACACCGTTCATTAAAGAGAGACGAAAAACACTATATAG.............................................................................................................................................................................................................................................................................AATTCTGGAAACAAGTTCCTCCAAGTGAACCATATCGTGTAATTATTGGTGATGTGAGAGATAAGCTATATCATACACGTGAGCGTACTCGCCAACTGTTATCCAATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E702765" ref_strand="+" ref_description="SGN-E702765 [FA19CE09]">
      <seq>cgagcttcgtgatcgggcagatgaactacaccgttcattaaagagagacgaaaaacactatatagaattctggaaacaagttcctccaagtgaaccatatcgtgtaattattggtgatgtgagagataagctatatcatacacgtgagcgtactcgccaactgttatccaatgggttctctgaaattcctgaggaagcaacatatactaacatcaagcagttcttggaacctcttgagctctgctacagatctctttgtgcttgtggggatcgaccaattgctgacggaagccttctggattttctacgacaagtttctacctttggactctcacttgtgagacttgacataagacaagagtcggatcggcacactgatgtccttgatgccattacccagcacttggaaattggttcatatcgagagtggtctgaggaacgtaaacaagagtggcttctctctgaactcagcggcaagcgacctctatttggacccgacctaccaaaaactgaagaaattgatgatgttttgaatacattccatgtcatatcagaacttccatcagactgctttggggcatacatcatctcaatggccactgcaccatctgatgtgcttgctgttgagcttctacagcgtgaatgccacgtgaagcaacctttacgggtagttccactttttgagaaattggatgatctggatgctgctcctgctgctattgcacgtcttttttcaattgagtggtacaaaaaccgcattaatgggaagcaagaagtcatgattggctactcagactctggnaaggatgctggtcggctgtcggcagcatggcagctatataaggctcaagaggagcttataaaagttgccaaacaatatgacgtgaagctaattatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="98565" stop="100727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98865" g_stop="98929" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98930" i_stop="99198" i_length="269">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.684" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99199" g_stop="99353" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="220" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99354" i_stop="99748" i_length="395">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.461" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99749" g_stop="100427" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="899" r_length="679" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E702765" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>899</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98865" e_stop="98929"/>
          <exon e_start="99199" e_stop="99353"/>
          <exon e_start="99749" e_stop="100427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCTTCGTGATCGGGCAGATGAACTACACCGTTCATTAAAGAGAGACGAAAAACACTATATAGGTATCTAGCATGAATGCTAAGTAAAATAACTTGCTTGTTCCGTATAAATTTAGTAGCACTGCTCAGAGTACTGATTTAAGGTAATCTTTTGCATGTTCTCCATTTCAAGTGAGAAAAATGCACGTTGTTGTCTATGATTTTGAAAAGAAAAGATTTTCAGCGTCTGGTACTTTAGTCAGTCTTCAGAGGCTGCATGAATTTTTCTCTGTACCTCTGCTGAACAGAGCAATTGCATTACTCTTGACCTTCAAAATTTACTTTTGATGTAGAATTCTGGAAACAAGTTCCTCCAAGTGAACCATATCGTGTAATTATTGGTGATGTGAGAGATAAGCTATATCATACACGTGAGCGTACTCGCCAACTGTTATCCAATGGGTTCTCTGAAATTCCTGAGGAAGCAACATATACTAACATCAAGCAGGTGTGCAACACTTCATTATTGTTAGTATTTTTCATAACAGAGAAATCCCTAAGGGCCAGTGGCCCAGTGGCTAATGGTTTTTTGTGGATGATGGGTTCACTCCACTACTCTTATGAAATATTTCGTTATTTTGTTATCTTTCTTGTTCTTTGTTTCCCATGCCTTGTTTGTAAATGTGAAGCATCTAAAATTAAGCAGCATTGTTATTCTTTGTTCAACTTGACGTGTTATTCCTGATAAAGGGACTTGAGAAGTGAATATGCCACGTCTCTTTGTTATTTTTTAATCATTGGCATGCACATTTGTATTCTGTCAGAATTGCATGTATTTCGATTTTCTGCCCCACAAACTGAATCTTTTGCCTGAATATATAAGTGGTTGCACATTTTGTGTAGTTCTTGGAACCTCTTGAGCTCTGCTACAGATCTCTTTGTGCTTGTGGGGATCGACCAATTGCTGACGGAAGCCTTCTGGATTTTCTACGACAAGTTTCTACCTTTGGACTCTCACTTGTGAGACTTGACATAAGACAAGAGTCGGATCGGCACACTGATGTCCTTGATGCCATTACCCAGCACTTGGAAATTGGTTCATATCGAGAGTGGTCTGAGGAACGTAAACAAGAGTGGCTTCTCTCTGAACTCAGCGGCAAGCGACCTCTATTTGGACCCGACCTACCAAAAACTGAAGAAATTGATGATGTTTTGAATACATTCCATGTCATATCAGAACTTCCATCAGACTGCTTTGGGGCATACATCATCTCAATGGCCACTGCACCATCTGATGTGCTTGCTGTTGAGCTTCTACAGCGTGAATGCCACGTGAAGCAACCTTTACGGGTAGTTCCACTTTTTGAGAAATTGGATGATCTGGATGCTGCTCCTGCTGCTATTGCACGTCTTTTTTCAATTGAGTGGTACAAAAACCGCATTAATGGGAAGCAAGAAGTCATGATTGGCTACTCAGACTCTGGAAAGGATGCTGGTCGGCTGTCGGCAGCATGGCAGCTATATAAGGCTCAAGAGGAGCTTATAAAAGTTGCCAAACAATATGACGTGAAGCTAATTATGT</genome_strand>
        <mrna_strand>CGAGCTTCGTGATCGGGCAGATGAACTACACCGTTCATTAAAGAGAGACGAAAAACACTATATAG.............................................................................................................................................................................................................................................................................AATTCTGGAAACAAGTTCCTCCAAGTGAACCATATCGTGTAATTATTGGTGATGTGAGAGATAAGCTATATCATACACGTGAGCGTACTCGCCAACTGTTATCCAATGGGTTCTCTGAAATTCCTGAGGAAGCAACATATACTAACATCAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGAACCTCTTGAGCTCTGCTACAGATCTCTTTGTGCTTGTGGGGATCGACCAATTGCTGACGGAAGCCTTCTGGATTTTCTACGACAAGTTTCTACCTTTGGACTCTCACTTGTGAGACTTGACATAAGACAAGAGTCGGATCGGCACACTGATGTCCTTGATGCCATTACCCAGCACTTGGAAATTGGTTCATATCGAGAGTGGTCTGAGGAACGTAAACAAGAGTGGCTTCTCTCTGAACTCAGCGGCAAGCGACCTCTATTTGGACCCGACCTACCAAAAACTGAAGAAATTGATGATGTTTTGAATACATTCCATGTCATATCAGAACTTCCATCAGACTGCTTTGGGGCATACATCATCTCAATGGCCACTGCACCATCTGATGTGCTTGCTGTTGAGCTTCTACAGCGTGAATGCCACGTGAAGCAACCTTTACGGGTAGTTCCACTTTTTGAGAAATTGGATGATCTGGATGCTGCTCCTGCTGCTATTGCACGTCTTTTTTCAATTGAGTGGTACAAAAACCGCATTAATGGGAAGCAAGAAGTCATGATTGGCTACTCAGACTCTGGNAAGGATGCTGGTCGGCTGTCGGCAGCATGGCAGCTATATAAGGCTCAAGAGGAGCTTATAAAAGTTGCCAAACAATATGACGTGAAGCTAATTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E334328" ref_strand="+" ref_description="SGN-E334328 [cTOD-21-O2]">
      <seq>cgatgtgagagataagttgtatcagacacgtgagcgtactcgccaagtgttagcccatggaatctctgatattcctgaggatgcaacttataatagcattgagcagttcttggaacctcttgagctctgctacaaatcactttgtgattgtggtgatcgtcccattgccgatggaagccttctggattttctaagacaagtttcaacctttggactctcatttgtgagacttgacataagacaagagtcagaccgtcacactgacgtccttgatgccattactcagcatttggaaattggttcatatcgtgagtggtctgaagaacgtagacaggagtggcttctttctgaactcagcggcaagagacctttatttggacctgatcttccaaaaacagaagaaattgctgatgtcttggatacactccatgtcatagcagaacttccatcagactgcttcggggcatacatcatctcaatggccaccgcaccatctgatgtgcttgcagttgagctcctacaacgtgaatgccatgtgaagcaacctttacgagtggttccactttttgagaaattggatgatctggaggctgctcctgctgctgttgcacgtctcttctcgattgagtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="98949" stop="100574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99248" g_stop="99353" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.849"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99354" i_stop="99748" i_length="395">
            <donor d_prob="0.999" d_score="0.82"/>
            <acceptor a_prob="0.461" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99749" g_stop="100274" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="632" r_length="526" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E334328" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99248" e_stop="99353"/>
          <exon e_start="99749" e_stop="100274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGTGAGAGATAAGCTATATCATACACGTGAGCGTACTCGCCAACTGTTATCCAATGGGTTCTCTGAAATTCCTGAGGAAGCAACATATACTAACATCAAGCAGGTGTGCAACACTTCATTATTGTTAGTATTTTTCATAACAGAGAAATCCCTAAGGGCCAGTGGCCCAGTGGCTAATGGTTTTTTGTGGATGATGGGTTCACTCCACTACTCTTATGAAATATTTCGTTATTTTGTTATCTTTCTTGTTCTTTGTTTCCCATGCCTTGTTTGTAAATGTGAAGCATCTAAAATTAAGCAGCATTGTTATTCTTTGTTCAACTTGACGTGTTATTCCTGATAAAGGGACTTGAGAAGTGAATATGCCACGTCTCTTTGTTATTTTTTAATCATTGGCATGCACATTTGTATTCTGTCAGAATTGCATGTATTTCGATTTTCTGCCCCACAAACTGAATCTTTTGCCTGAATATATAAGTGGTTGCACATTTTGTGTAGTTCTTGGAACCTCTTGAGCTCTGCTACAGATCTCTTTGTGCTTGTGGGGATCGACCAATTGCTGACGGAAGCCTTCTGGATTTTCTACGACAAGTTTCTACCTTTGGACTCTCACTTGTGAGACTTGACATAAGACAAGAGTCGGATCGGCACACTGATGTCCTTGATGCCATTACCCAGCACTTGGAAATTGGTTCATATCGAGAGTGGTCTGAGGAACGTAAACAAGAGTGGCTTCTCTCTGAACTCAGCGGCAAGCGACCTCTATTTGGACCCGACCTACCAAAAACTGAAGAAATTGATGATGTTTTGAATACATTCCATGTCATATCAGAACTTCCATCAGACTGCTTTGGGGCATACATCATCTCAATGGCCACTGCACCATCTGATGTGCTTGCTGTTGAGCTTCTACAGCGTGAATGCCACGTGAAGCAACCTTTACGGGTAGTTCCACTTTTTGAGAAATTGGATGATCTGGATGCTGCTCCTGCTGCTATTGCACGTCTTTTTTCAATTGAGTGGT</genome_strand>
        <mrna_strand>CGATGTGAGAGATAAGTTGTATCAGACACGTGAGCGTACTCGCCAAGTGTTAGCCCATGGAATCTCTGATATTCCTGAGGATGCAACTTATAATAGCATTGAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGAACCTCTTGAGCTCTGCTACAAATCACTTTGTGATTGTGGTGATCGTCCCATTGCCGATGGAAGCCTTCTGGATTTTCTAAGACAAGTTTCAACCTTTGGACTCTCATTTGTGAGACTTGACATAAGACAAGAGTCAGACCGTCACACTGACGTCCTTGATGCCATTACTCAGCATTTGGAAATTGGTTCATATCGTGAGTGGTCTGAAGAACGTAGACAGGAGTGGCTTCTTTCTGAACTCAGCGGCAAGAGACCTTTATTTGGACCTGATCTTCCAAAAACAGAAGAAATTGCTGATGTCTTGGATACACTCCATGTCATAGCAGAACTTCCATCAGACTGCTTCGGGGCATACATCATCTCAATGGCCACCGCACCATCTGATGTGCTTGCAGTTGAGCTCCTACAACGTGAATGCCATGTGAAGCAACCTTTACGAGTGGTTCCACTTTTTGAGAAATTGGATGATCTGGAGGCTGCTCCTGCTGCTGTTGCACGTCTCTTCTCGATTGAGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E273182" ref_strand="+" ref_description="SGN-E273182 [cLEM-24-J8]">
      <seq>tatatcatacacgtgagcgtactcgccaactgttatccaatgggttctctgaaattcctgaggaagcaacatatactaacatcaagcagttcttggaacctcttgagctctgctacagatctctttgtgcttgtggggatcgaccaattgctgacggaagccttctggattttctacgacaagtttctacctttggactctcacttgtgagacttgacataagacaagagtcggatcggcacactgatgtccttgatgccattacccagcacttggaaattggttcatatcgagagtggtctgaggaacgtaaacaagagtggcttctctctgaactcagcggcaagcgacctctatttggacccgacctaccaaaaactgaagaaattgatgatgttttgaatacattccatgtcatatcagaacttccatcagactgctttggggcatacatcatctcaatggccactgcaccatctgatgtgcttgctgttgagcttctacagcgtgaatgccacgtgaagcaacctttacgggtagttccactttttgagaaattggatgatctggatgctgctcctgctgctattgcacgtcttttttcaattgagtggtacaaaaaccgcattaatgggaagcaagaagtcatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="98965" stop="100612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99265" g_stop="99353" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99354" i_stop="99748" i_length="395">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.461" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99749" g_stop="100312" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="653" r_length="564" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E273182" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99265" e_stop="99353"/>
          <exon e_start="99749" e_stop="100312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATCATACACGTGAGCGTACTCGCCAACTGTTATCCAATGGGTTCTCTGAAATTCCTGAGGAAGCAACATATACTAACATCAAGCAGGTGTGCAACACTTCATTATTGTTAGTATTTTTCATAACAGAGAAATCCCTAAGGGCCAGTGGCCCAGTGGCTAATGGTTTTTTGTGGATGATGGGTTCACTCCACTACTCTTATGAAATATTTCGTTATTTTGTTATCTTTCTTGTTCTTTGTTTCCCATGCCTTGTTTGTAAATGTGAAGCATCTAAAATTAAGCAGCATTGTTATTCTTTGTTCAACTTGACGTGTTATTCCTGATAAAGGGACTTGAGAAGTGAATATGCCACGTCTCTTTGTTATTTTTTAATCATTGGCATGCACATTTGTATTCTGTCAGAATTGCATGTATTTCGATTTTCTGCCCCACAAACTGAATCTTTTGCCTGAATATATAAGTGGTTGCACATTTTGTGTAGTTCTTGGAACCTCTTGAGCTCTGCTACAGATCTCTTTGTGCTTGTGGGGATCGACCAATTGCTGACGGAAGCCTTCTGGATTTTCTACGACAAGTTTCTACCTTTGGACTCTCACTTGTGAGACTTGACATAAGACAAGAGTCGGATCGGCACACTGATGTCCTTGATGCCATTACCCAGCACTTGGAAATTGGTTCATATCGAGAGTGGTCTGAGGAACGTAAACAAGAGTGGCTTCTCTCTGAACTCAGCGGCAAGCGACCTCTATTTGGACCCGACCTACCAAAAACTGAAGAAATTGATGATGTTTTGAATACATTCCATGTCATATCAGAACTTCCATCAGACTGCTTTGGGGCATACATCATCTCAATGGCCACTGCACCATCTGATGTGCTTGCTGTTGAGCTTCTACAGCGTGAATGCCACGTGAAGCAACCTTTACGGGTAGTTCCACTTTTTGAGAAATTGGATGATCTGGATGCTGCTCCTGCTGCTATTGCACGTCTTTTTTCAATTGAGTGGTACAAAAACCGCATTAATGGGAAGCAAGAAGTCATGATT</genome_strand>
        <mrna_strand>TATATCATACACGTGAGCGTACTCGCCAACTGTTATCCAATGGGTTCTCTGAAATTCCTGAGGAAGCAACATATACTAACATCAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGAACCTCTTGAGCTCTGCTACAGATCTCTTTGTGCTTGTGGGGATCGACCAATTGCTGACGGAAGCCTTCTGGATTTTCTACGACAAGTTTCTACCTTTGGACTCTCACTTGTGAGACTTGACATAAGACAAGAGTCGGATCGGCACACTGATGTCCTTGATGCCATTACCCAGCACTTGGAAATTGGTTCATATCGAGAGTGGTCTGAGGAACGTAAACAAGAGTGGCTTCTCTCTGAACTCAGCGGCAAGCGACCTCTATTTGGACCCGACCTACCAAAAACTGAAGAAATTGATGATGTTTTGAATACATTCCATGTCATATCAGAACTTCCATCAGACTGCTTTGGGGCATACATCATCTCAATGGCCACTGCACCATCTGATGTGCTTGCTGTTGAGCTTCTACAGCGTGAATGCCACGTGAAGCAACCTTTACGGGTAGTTCCACTTTTTGAGAAATTGGATGATCTGGATGCTGCTCCTGCTGCTATTGCACGTCTTTTTTCAATTGAGTGGTACAAAAACCGCATTAATGGGAAGCAAGAAGTCATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E249882" ref_strand="+" ref_description="SGN-E249882 [cLEF-57-N15]">
      <seq>aactgttatccaatgggttctctgaaattcctgaggaagcaacatatactaacatcaagcagttcttggaacctcttgagctctgctacagatctctttgtgcttgtggggatcgaccaattgctgacggaagccttctggattttctacgacaagtttctacctttggactctcacttgtgagacttgacataagacaagagtcggatcggcacactgatgtccttgatgccattacccagcacttggaaattggttcatatcgagagtggtctgaggaacgtaaacaagagtggcttctctctgaactcagcggcaagcgacctctatttggacccgacctaccaaaaactgaagaaattgatgatgttttgaatacattccatgtcatatcagaacttccatcagactgctttggggcatacatcatctcaatggccactgcaccatctgatgtgcttgctgttgagcttctacagcgtgaatgccacgtgaagcaacctttacgggtagttccactttttgagaaattggatgatctggatgctgctcctgctgctattgcacgtcttttttcaattgagtggtacaaaaaccgcattaatgggaagcaagaagtcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="98992" stop="100609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99292" g_stop="99353" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99354" i_stop="99748" i_length="395">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.461" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99749" g_stop="100309" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="623" r_length="561" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E249882" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99292" e_stop="99353"/>
          <exon e_start="99749" e_stop="100309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGTTATCCAATGGGTTCTCTGAAATTCCTGAGGAAGCAACATATACTAACATCAAGCAGGTGTGCAACACTTCATTATTGTTAGTATTTTTCATAACAGAGAAATCCCTAAGGGCCAGTGGCCCAGTGGCTAATGGTTTTTTGTGGATGATGGGTTCACTCCACTACTCTTATGAAATATTTCGTTATTTTGTTATCTTTCTTGTTCTTTGTTTCCCATGCCTTGTTTGTAAATGTGAAGCATCTAAAATTAAGCAGCATTGTTATTCTTTGTTCAACTTGACGTGTTATTCCTGATAAAGGGACTTGAGAAGTGAATATGCCACGTCTCTTTGTTATTTTTTAATCATTGGCATGCACATTTGTATTCTGTCAGAATTGCATGTATTTCGATTTTCTGCCCCACAAACTGAATCTTTTGCCTGAATATATAAGTGGTTGCACATTTTGTGTAGTTCTTGGAACCTCTTGAGCTCTGCTACAGATCTCTTTGTGCTTGTGGGGATCGACCAATTGCTGACGGAAGCCTTCTGGATTTTCTACGACAAGTTTCTACCTTTGGACTCTCACTTGTGAGACTTGACATAAGACAAGAGTCGGATCGGCACACTGATGTCCTTGATGCCATTACCCAGCACTTGGAAATTGGTTCATATCGAGAGTGGTCTGAGGAACGTAAACAAGAGTGGCTTCTCTCTGAACTCAGCGGCAAGCGACCTCTATTTGGACCCGACCTACCAAAAACTGAAGAAATTGATGATGTTTTGAATACATTCCATGTCATATCAGAACTTCCATCAGACTGCTTTGGGGCATACATCATCTCAATGGCCACTGCACCATCTGATGTGCTTGCTGTTGAGCTTCTACAGCGTGAATGCCACGTGAAGCAACCTTTACGGGTAGTTCCACTTTTTGAGAAATTGGATGATCTGGATGCTGCTCCTGCTGCTATTGCACGTCTTTTTTCAATTGAGTGGTACAAAAACCGCATTAATGGGAAGCAAGAAGTCATG</genome_strand>
        <mrna_strand>AACTGTTATCCAATGGGTTCTCTGAAATTCCTGAGGAAGCAACATATACTAACATCAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGAACCTCTTGAGCTCTGCTACAGATCTCTTTGTGCTTGTGGGGATCGACCAATTGCTGACGGAAGCCTTCTGGATTTTCTACGACAAGTTTCTACCTTTGGACTCTCACTTGTGAGACTTGACATAAGACAAGAGTCGGATCGGCACACTGATGTCCTTGATGCCATTACCCAGCACTTGGAAATTGGTTCATATCGAGAGTGGTCTGAGGAACGTAAACAAGAGTGGCTTCTCTCTGAACTCAGCGGCAAGCGACCTCTATTTGGACCCGACCTACCAAAAACTGAAGAAATTGATGATGTTTTGAATACATTCCATGTCATATCAGAACTTCCATCAGACTGCTTTGGGGCATACATCATCTCAATGGCCACTGCACCATCTGATGTGCTTGCTGTTGAGCTTCTACAGCGTGAATGCCACGTGAAGCAACCTTTACGGGTAGTTCCACTTTTTGAGAAATTGGATGATCTGGATGCTGCTCCTGCTGCTATTGCACGTCTTTTTTCAATTGAGTGGTACAAAAACCGCATTAATGGGAAGCAAGAAGTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E245564" ref_strand="+" ref_description="SGN-E245564 [cLEF-43-C11]">
      <seq>tatccaatgggttctctgaaattcctgaggaagcaacgtatactaacatcaagcagttcttggaacctcttgagctctgctacagatctctttgtgcttgtggggatcgaccaattgctgacggaagccttctggattttctacgacaagtttctacctttggactctcacttgtgagacttgacataagacaagagtcggatcggcacactgatgtccttgatgccattacccagcacttggaaattggttcatatcgagagtggtctgaggaacgtaaacaagagtggcttctctctgaactcagcggcaagcgacctctatttggacccgacctaccaaaaactgaagaaattgatgatgttttgaatacattccatgtcatatcagaacttccatcagactgctttggggcatacatcatctcaatggccactgcaccatctgatgtgcttgctgttgagcttctacagcgtgaatgccacgtgaagcaacctttacgggtagttccactttttgagaaattggatgatctggatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="98998" stop="100533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99298" g_stop="99353" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99354" i_stop="99748" i_length="395">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.461" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99749" g_stop="100233" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="541" r_length="485" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E245564" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99298" e_stop="99353"/>
          <exon e_start="99749" e_stop="100233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCAATGGGTTCTCTGAAATTCCTGAGGAAGCAACATATACTAACATCAAGCAGGTGTGCAACACTTCATTATTGTTAGTATTTTTCATAACAGAGAAATCCCTAAGGGCCAGTGGCCCAGTGGCTAATGGTTTTTTGTGGATGATGGGTTCACTCCACTACTCTTATGAAATATTTCGTTATTTTGTTATCTTTCTTGTTCTTTGTTTCCCATGCCTTGTTTGTAAATGTGAAGCATCTAAAATTAAGCAGCATTGTTATTCTTTGTTCAACTTGACGTGTTATTCCTGATAAAGGGACTTGAGAAGTGAATATGCCACGTCTCTTTGTTATTTTTTAATCATTGGCATGCACATTTGTATTCTGTCAGAATTGCATGTATTTCGATTTTCTGCCCCACAAACTGAATCTTTTGCCTGAATATATAAGTGGTTGCACATTTTGTGTAGTTCTTGGAACCTCTTGAGCTCTGCTACAGATCTCTTTGTGCTTGTGGGGATCGACCAATTGCTGACGGAAGCCTTCTGGATTTTCTACGACAAGTTTCTACCTTTGGACTCTCACTTGTGAGACTTGACATAAGACAAGAGTCGGATCGGCACACTGATGTCCTTGATGCCATTACCCAGCACTTGGAAATTGGTTCATATCGAGAGTGGTCTGAGGAACGTAAACAAGAGTGGCTTCTCTCTGAACTCAGCGGCAAGCGACCTCTATTTGGACCCGACCTACCAAAAACTGAAGAAATTGATGATGTTTTGAATACATTCCATGTCATATCAGAACTTCCATCAGACTGCTTTGGGGCATACATCATCTCAATGGCCACTGCACCATCTGATGTGCTTGCTGTTGAGCTTCTACAGCGTGAATGCCACGTGAAGCAACCTTTACGGGTAGTTCCACTTTTTGAGAAATTGGATGATCTGGATGC</genome_strand>
        <mrna_strand>TATCCAATGGGTTCTCTGAAATTCCTGAGGAAGCAACGTATACTAACATCAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGAACCTCTTGAGCTCTGCTACAGATCTCTTTGTGCTTGTGGGGATCGACCAATTGCTGACGGAAGCCTTCTGGATTTTCTACGACAAGTTTCTACCTTTGGACTCTCACTTGTGAGACTTGACATAAGACAAGAGTCGGATCGGCACACTGATGTCCTTGATGCCATTACCCAGCACTTGGAAATTGGTTCATATCGAGAGTGGTCTGAGGAACGTAAACAAGAGTGGCTTCTCTCTGAACTCAGCGGCAAGCGACCTCTATTTGGACCCGACCTACCAAAAACTGAAGAAATTGATGATGTTTTGAATACATTCCATGTCATATCAGAACTTCCATCAGACTGCTTTGGGGCATACATCATCTCAATGGCCACTGCACCATCTGATGTGCTTGCTGTTGAGCTTCTACAGCGTGAATGCCACGTGAAGCAACCTTTACGGGTAGTTCCACTTTTTGAGAAATTGGATGATCTGGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E246951" ref_strand="+" ref_description="SGN-E246951 [cLEF-41-A19]">
      <seq>aacatatactaacatcaagcagttcttggaacctcttgagctctgctacagatctctttgtgcttgtggggatcgaccaattgctgacggaagccttctggattttctacgacaagtttctacctttggactctcacttgtgagacttgacataagacaagagtcggatcggcacactgatgtccttgatgccattacccagcacttggaaattggttcatatcgagagtggtctgaggaacgtaaacaagagtggcttctctctgaactcagcggcaagcgacctctatttggacccgacctaccaaaaactgaagaaattgatgatgttttgaatacattccatgtcatatcagaacttccatcagactgctttggggcatacatcatctcaatggccactgcaccatctgatgtgcttgctgttgagcttctacagcgtgaatgccacgtgaagcaacctttacgggtagttccactttttgagaaattggatgatctggatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="99032" stop="100534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99332" g_stop="99353" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99354" i_stop="99748" i_length="395">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.461" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99749" g_stop="100234" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="508" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E246951" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99332" e_stop="99353"/>
          <exon e_start="99749" e_stop="100234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATATACTAACATCAAGCAGGTGTGCAACACTTCATTATTGTTAGTATTTTTCATAACAGAGAAATCCCTAAGGGCCAGTGGCCCAGTGGCTAATGGTTTTTTGTGGATGATGGGTTCACTCCACTACTCTTATGAAATATTTCGTTATTTTGTTATCTTTCTTGTTCTTTGTTTCCCATGCCTTGTTTGTAAATGTGAAGCATCTAAAATTAAGCAGCATTGTTATTCTTTGTTCAACTTGACGTGTTATTCCTGATAAAGGGACTTGAGAAGTGAATATGCCACGTCTCTTTGTTATTTTTTAATCATTGGCATGCACATTTGTATTCTGTCAGAATTGCATGTATTTCGATTTTCTGCCCCACAAACTGAATCTTTTGCCTGAATATATAAGTGGTTGCACATTTTGTGTAGTTCTTGGAACCTCTTGAGCTCTGCTACAGATCTCTTTGTGCTTGTGGGGATCGACCAATTGCTGACGGAAGCCTTCTGGATTTTCTACGACAAGTTTCTACCTTTGGACTCTCACTTGTGAGACTTGACATAAGACAAGAGTCGGATCGGCACACTGATGTCCTTGATGCCATTACCCAGCACTTGGAAATTGGTTCATATCGAGAGTGGTCTGAGGAACGTAAACAAGAGTGGCTTCTCTCTGAACTCAGCGGCAAGCGACCTCTATTTGGACCCGACCTACCAAAAACTGAAGAAATTGATGATGTTTTGAATACATTCCATGTCATATCAGAACTTCCATCAGACTGCTTTGGGGCATACATCATCTCAATGGCCACTGCACCATCTGATGTGCTTGCTGTTGAGCTTCTACAGCGTGAATGCCACGTGAAGCAACCTTTACGGGTAGTTCCACTTTTTGAGAAATTGGATGATCTGGATGCT</genome_strand>
        <mrna_strand>AACATATACTAACATCAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGAACCTCTTGAGCTCTGCTACAGATCTCTTTGTGCTTGTGGGGATCGACCAATTGCTGACGGAAGCCTTCTGGATTTTCTACGACAAGTTTCTACCTTTGGACTCTCACTTGTGAGACTTGACATAAGACAAGAGTCGGATCGGCACACTGATGTCCTTGATGCCATTACCCAGCACTTGGAAATTGGTTCATATCGAGAGTGGTCTGAGGAACGTAAACAAGAGTGGCTTCTCTCTGAACTCAGCGGCAAGCGACCTCTATTTGGACCCGACCTACCAAAAACTGAAGAAATTGATGATGTTTTGAATACATTCCATGTCATATCAGAACTTCCATCAGACTGCTTTGGGGCATACATCATCTCAATGGCCACTGCACCATCTGATGTGCTTGCTGTTGAGCTTCTACAGCGTGAATGCCACGTGAAGCAACCTTTACGGGTAGTTCCACTTTTTGAGAAATTGGATGATCTGGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E452856" ref_strand="+" ref_description="SGN-E452856 [cSTS-18-M7]">
      <seq>cggaagccttctggattttctacgacaagtttccacctttggactctcacttgtgagacttgacataagacaagagtcggatcgccacactgatgtccttgatgccattacccagcacttggaaattggttcatatcgagagtggtctgaggaacgtagacaagagtggcttctctctgaactcagcggcaagcgacctctatttggacccgatctaccaaaaactgaagaaattgctgatgttttgaatacattccatgtcatatcagaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="99514" stop="100386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99814" g_stop="100086" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E452856" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99814" e_stop="100086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAGCCTTCTGGATTTTCTACGACAAGTTTCTACCTTTGGACTCTCACTTGTGAGACTTGACATAAGACAAGAGTCGGATCGGCACACTGATGTCCTTGATGCCATTACCCAGCACTTGGAAATTGGTTCATATCGAGAGTGGTCTGAGGAACGTAAACAAGAGTGGCTTCTCTCTGAACTCAGCGGCAAGCGACCTCTATTTGGACCCGACCTACCAAAAACTGAAGAAATTGATGATGTTTTGAATACATTCCATGTCATATCAGAACT</genome_strand>
        <mrna_strand>CGGAAGCCTTCTGGATTTTCTACGACAAGTTTCCACCTTTGGACTCTCACTTGTGAGACTTGACATAAGACAAGAGTCGGATCGCCACACTGATGTCCTTGATGCCATTACCCAGCACTTGGAAATTGGTTCATATCGAGAGTGGTCTGAGGAACGTAGACAAGAGTGGCTTCTCTCTGAACTCAGCGGCAAGCGACCTCTATTTGGACCCGATCTACCAAAAACTGAAGAAATTGCTGATGTTTTGAATACATTCCATGTCATATCAGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E249084" ref_strand="+" ref_description="SGN-E249084 [cLEF-49-H21]">
      <seq>cttctggattttctacgacaagtttctacctttggactctcacttgtgagacttgacataagacaagagtcggatcggcacactgatgtccttgatgccattacccagcacttggaaattggttcatatcgagagtggtctgaggaacgtaaacaagagtggcttctctctgaactcagcggcaagcgacctctatttggacccgacctaccaaaaactgaagaaattgatgatgttttgaatacattccatgtcatatcagaacttccatcagactgctttggggcatacatcatctcaatggccactgcaccatctgatgtgcttgctgttgagcttctacagcgtgaatgccacgtgaagcaacctttacgggtagttccactttttgagaaattggatgatctggatgctgctcctgctgctattgcacgtcttttttcaattgagtggtacaaaaaccgcattaatgggaagcaagaagtcatgattggctactcagactctggaaaagatgctggtcggctgtcggcagcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="99521" stop="100659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99821" g_stop="100359" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E249084" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99821" e_stop="100359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTGGATTTTCTACGACAAGTTTCTACCTTTGGACTCTCACTTGTGAGACTTGACATAAGACAAGAGTCGGATCGGCACACTGATGTCCTTGATGCCATTACCCAGCACTTGGAAATTGGTTCATATCGAGAGTGGTCTGAGGAACGTAAACAAGAGTGGCTTCTCTCTGAACTCAGCGGCAAGCGACCTCTATTTGGACCCGACCTACCAAAAACTGAAGAAATTGATGATGTTTTGAATACATTCCATGTCATATCAGAACTTCCATCAGACTGCTTTGGGGCATACATCATCTCAATGGCCACTGCACCATCTGATGTGCTTGCTGTTGAGCTTCTACAGCGTGAATGCCACGTGAAGCAACCTTTACGGGTAGTTCCACTTTTTGAGAAATTGGATGATCTGGATGCTGCTCCTGCTGCTATTGCACGTCTTTTTTCAATTGAGTGGTACAAAAACCGCATTAATGGGAAGCAAGAAGTCATGATTGGCTACTCAGACTCTGGAAAGGATGCTGGTCGGCTGTCGGCAGCATG</genome_strand>
        <mrna_strand>CTTCTGGATTTTCTACGACAAGTTTCTACCTTTGGACTCTCACTTGTGAGACTTGACATAAGACAAGAGTCGGATCGGCACACTGATGTCCTTGATGCCATTACCCAGCACTTGGAAATTGGTTCATATCGAGAGTGGTCTGAGGAACGTAAACAAGAGTGGCTTCTCTCTGAACTCAGCGGCAAGCGACCTCTATTTGGACCCGACCTACCAAAAACTGAAGAAATTGATGATGTTTTGAATACATTCCATGTCATATCAGAACTTCCATCAGACTGCTTTGGGGCATACATCATCTCAATGGCCACTGCACCATCTGATGTGCTTGCTGTTGAGCTTCTACAGCGTGAATGCCACGTGAAGCAACCTTTACGGGTAGTTCCACTTTTTGAGAAATTGGATGATCTGGATGCTGCTCCTGCTGCTATTGCACGTCTTTTTTCAATTGAGTGGTACAAAAACCGCATTAATGGGAAGCAAGAAGTCATGATTGGCTACTCAGACTCTGGAAAAGATGCTGGTCGGCTGTCGGCAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E248912" ref_strand="+" ref_description="SGN-E248912 [cLEF-49-H11]">
      <seq>cttctggattttctacgacaagtttctacctttggactctcacttgtgagacttgacataagacaagagtcggatcggcacactgatgtccttgatgccattacccagcacttggaaattggttcatatcgagagtggtctgaggaacgtaaacaagagtggcttctctctgaactcagcggcaagcgacctctatttggacccgacctaccaaaaactgaagaaattgatgatgttttgaatacattccatgtcatatcagaacttccatcagactgctttggggcatacatcatctcaatggccactgcaccatctgatgtgcttgctgttgagcttctacagcgtgaatgccacgtgaagcaacctttacgggtagttccactttttgagaaattggatgatctggatgctgctcctgctgctattgcacgtcttttttcaattgagtggtacaaaaaccgcattaatgggaagcaagaagtcatgattggctactcagactctggaaaggatgctggtcggctgtcggcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="99521" stop="100657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99821" g_stop="100357" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E248912" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99821" e_stop="100357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTGGATTTTCTACGACAAGTTTCTACCTTTGGACTCTCACTTGTGAGACTTGACATAAGACAAGAGTCGGATCGGCACACTGATGTCCTTGATGCCATTACCCAGCACTTGGAAATTGGTTCATATCGAGAGTGGTCTGAGGAACGTAAACAAGAGTGGCTTCTCTCTGAACTCAGCGGCAAGCGACCTCTATTTGGACCCGACCTACCAAAAACTGAAGAAATTGATGATGTTTTGAATACATTCCATGTCATATCAGAACTTCCATCAGACTGCTTTGGGGCATACATCATCTCAATGGCCACTGCACCATCTGATGTGCTTGCTGTTGAGCTTCTACAGCGTGAATGCCACGTGAAGCAACCTTTACGGGTAGTTCCACTTTTTGAGAAATTGGATGATCTGGATGCTGCTCCTGCTGCTATTGCACGTCTTTTTTCAATTGAGTGGTACAAAAACCGCATTAATGGGAAGCAAGAAGTCATGATTGGCTACTCAGACTCTGGAAAGGATGCTGGTCGGCTGTCGGCAGCA</genome_strand>
        <mrna_strand>CTTCTGGATTTTCTACGACAAGTTTCTACCTTTGGACTCTCACTTGTGAGACTTGACATAAGACAAGAGTCGGATCGGCACACTGATGTCCTTGATGCCATTACCCAGCACTTGGAAATTGGTTCATATCGAGAGTGGTCTGAGGAACGTAAACAAGAGTGGCTTCTCTCTGAACTCAGCGGCAAGCGACCTCTATTTGGACCCGACCTACCAAAAACTGAAGAAATTGATGATGTTTTGAATACATTCCATGTCATATCAGAACTTCCATCAGACTGCTTTGGGGCATACATCATCTCAATGGCCACTGCACCATCTGATGTGCTTGCTGTTGAGCTTCTACAGCGTGAATGCCACGTGAAGCAACCTTTACGGGTAGTTCCACTTTTTGAGAAATTGGATGATCTGGATGCTGCTCCTGCTGCTATTGCACGTCTTTTTTCAATTGAGTGGTACAAAAACCGCATTAATGGGAAGCAAGAAGTCATGATTGGCTACTCAGACTCTGGAAAGGATGCTGGTCGGCTGTCGGCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E248904" ref_strand="+" ref_description="SGN-E248904 [cLEF-49-D15]">
      <seq>cggcacactgatgtccttgatgccattacccagcacttggaaattggttcatatcgagagtggtctgaggaacgtaaacaagagtggcttctctctgaactcagcggcaagcgacctctatttggacccgacctaccaaaaactgaagaaattgatgatgttttgaatacattccatgtcatatcagaacttccatcagactgctttggggcatacatcatctcaatggccactgcaccatctgatgtgcttgctgttgagcttctacagcgtgaatgccacgtgaagcaacctttacgggtagttccactttttgagaaattggatgatctggatgctgctcctgctgctattgcacgtcttttttcaattgagtggtacaaaaaccgcattaatgggaagcaagaagtcatgattggctactcagactctggaaaggatgctggtcggctgtcggcagcatggcagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="99596" stop="100666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99896" g_stop="100366" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E248904" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99896" e_stop="100366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCACACTGATGTCCTTGATGCCATTACCCAGCACTTGGAAATTGGTTCATATCGAGAGTGGTCTGAGGAACGTAAACAAGAGTGGCTTCTCTCTGAACTCAGCGGCAAGCGACCTCTATTTGGACCCGACCTACCAAAAACTGAAGAAATTGATGATGTTTTGAATACATTCCATGTCATATCAGAACTTCCATCAGACTGCTTTGGGGCATACATCATCTCAATGGCCACTGCACCATCTGATGTGCTTGCTGTTGAGCTTCTACAGCGTGAATGCCACGTGAAGCAACCTTTACGGGTAGTTCCACTTTTTGAGAAATTGGATGATCTGGATGCTGCTCCTGCTGCTATTGCACGTCTTTTTTCAATTGAGTGGTACAAAAACCGCATTAATGGGAAGCAAGAAGTCATGATTGGCTACTCAGACTCTGGAAAGGATGCTGGTCGGCTGTCGGCAGCATGGCAGCTA</genome_strand>
        <mrna_strand>CGGCACACTGATGTCCTTGATGCCATTACCCAGCACTTGGAAATTGGTTCATATCGAGAGTGGTCTGAGGAACGTAAACAAGAGTGGCTTCTCTCTGAACTCAGCGGCAAGCGACCTCTATTTGGACCCGACCTACCAAAAACTGAAGAAATTGATGATGTTTTGAATACATTCCATGTCATATCAGAACTTCCATCAGACTGCTTTGGGGCATACATCATCTCAATGGCCACTGCACCATCTGATGTGCTTGCTGTTGAGCTTCTACAGCGTGAATGCCACGTGAAGCAACCTTTACGGGTAGTTCCACTTTTTGAGAAATTGGATGATCTGGATGCTGCTCCTGCTGCTATTGCACGTCTTTTTTCAATTGAGTGGTACAAAAACCGCATTAATGGGAAGCAAGAAGTCATGATTGGCTACTCAGACTCTGGAAAGGATGCTGGTCGGCTGTCGGCAGCATGGCAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E249211" ref_strand="+" ref_description="SGN-E249211 [cLEF-50-M10]">
      <seq>ttggaaattggttcatatcgagagtggtctgaggaacgtaaacaagagtggcttctgtctgaactcagcggcaagcgacctctatttggacccgacctaccaaaaactgaagaaattgatgatgttttgaatacattccatgtcatatcagaacttccatcagactgctttggggcatacatcatctcaatggccactgcaccatctgatgtgcttgctgttgagcttctacagcgtgaatgccacgtgaagcaacctttacgggtagttccactttttgagaaattggatgatctggatgctgctgctgctgctattgcacgtcttttttcaattgagtggtacaaaaaccgcattaatgggaagcaagaagtcatgattggctactcagactctggaaaggatgctggtcggctgtcggcagcatggcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="99632" stop="100664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99932" g_stop="100364" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E249211" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99932" e_stop="100364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAAATTGGTTCATATCGAGAGTGGTCTGAGGAACGTAAACAAGAGTGGCTTCTCTCTGAACTCAGCGGCAAGCGACCTCTATTTGGACCCGACCTACCAAAAACTGAAGAAATTGATGATGTTTTGAATACATTCCATGTCATATCAGAACTTCCATCAGACTGCTTTGGGGCATACATCATCTCAATGGCCACTGCACCATCTGATGTGCTTGCTGTTGAGCTTCTACAGCGTGAATGCCACGTGAAGCAACCTTTACGGGTAGTTCCACTTTTTGAGAAATTGGATGATCTGGATGCTGCTCCTGCTGCTATTGCACGTCTTTTTTCAATTGAGTGGTACAAAAACCGCATTAATGGGAAGCAAGAAGTCATGATTGGCTACTCAGACTCTGGAAAGGATGCTGGTCGGCTGTCGGCAGCATGGCAGC</genome_strand>
        <mrna_strand>TTGGAAATTGGTTCATATCGAGAGTGGTCTGAGGAACGTAAACAAGAGTGGCTTCTGTCTGAACTCAGCGGCAAGCGACCTCTATTTGGACCCGACCTACCAAAAACTGAAGAAATTGATGATGTTTTGAATACATTCCATGTCATATCAGAACTTCCATCAGACTGCTTTGGGGCATACATCATCTCAATGGCCACTGCACCATCTGATGTGCTTGCTGTTGAGCTTCTACAGCGTGAATGCCACGTGAAGCAACCTTTACGGGTAGTTCCACTTTTTGAGAAATTGGATGATCTGGATGCTGCTGCTGCTGCTATTGCACGTCTTTTTTCAATTGAGTGGTACAAAAACCGCATTAATGGGAAGCAAGAAGTCATGATTGGCTACTCAGACTCTGGAAAGGATGCTGGTCGGCTGTCGGCAGCATGGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E709399" ref_strand="+" ref_description="SGN-E709399 [FA51DB08]">
      <seq>cccggttaagcacacaagagtggcttctctctgaactccgcggcaagcgacctctatttggacccgacctaccaaaaactgaagaaattgatgatgttttgaatacattccatgtcatatcagaacttccatcacactgctttggggcatacatcactctcaatggccactgcaccatctgatgtgcttgctgttgagcttctacagcgtgaatgccacgtgaagcaacctttacgggtagttccactttttgagaaattggatgatctggatgctgctcctgctgctattgcacgtcttttttcaattgagtggtacaaaaaccgcattaatgcggaagcaagaagtcatgattggctactcagactctggaaaggatgcctggtcggctgtccgcagcatggcagctatataaggctcaagaggagcttataccagttgccaaacaatatgacctgaagctaattatgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="99666" stop="100729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99960" g_stop="100429" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E709399" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99960" e_stop="100429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGGAACGTAAACAAGAGTGGCTTCTCTCTGAACTCAGCGGCAAGCGACCTCTATTTGGACCCGACCTACCAAAAACTGAAGAAATTGATGATGTTTTGAATACATTCCATGTCATATCAGAACTTCCATCAGACTGCTTTGGGGCATACATCA-TCTCAATGGCCACTGCACCATCTGATGTGCTTGCTGTTGAGCTTCTACAGCGTGAATGCCACGTGAAGCAACCTTTACGGGTAGTTCCACTTTTTGAGAAATTGGATGATCTGGATGCTGCTCCTGCTGCTATTGCACGTCTTTTTTCAATTGAGTGGTACAAAAACCGCATTAATG-GGAAGCAAGAAGTCATGATTGGCTACTCAGACTCTGGAAAGGATG-CTGGTCGGCTGTCGGCAGCATGGCAGCTATATAAGGCTCAAGAGGAGCTTATAAAAGTTGCCAAACAATATGACGTGAAGCTAATTATGTTC</genome_strand>
        <mrna_strand>CCCGGTTAAGCACACAAGAGTGGCTTCTCTCTGAACTCCGCGGCAAGCGACCTCTATTTGGACCCGACCTACCAAAAACTGAAGAAATTGATGATGTTTTGAATACATTCCATGTCATATCAGAACTTCCATCACACTGCTTTGGGGCATACATCACTCTCAATGGCCACTGCACCATCTGATGTGCTTGCTGTTGAGCTTCTACAGCGTGAATGCCACGTGAAGCAACCTTTACGGGTAGTTCCACTTTTTGAGAAATTGGATGATCTGGATGCTGCTCCTGCTGCTATTGCACGTCTTTTTTCAATTGAGTGGTACAAAAACCGCATTAATGCGGAAGCAAGAAGTCATGATTGGCTACTCAGACTCTGGAAAGGATGCCTGGTCGGCTGTCCGCAGCATGGCAGCTATATAAGGCTCAAGAGGAGCTTATACCAGTTGCCAAACAATATGACCTGAAGCTAATTATGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E701762" ref_strand="+" ref_description="SGN-E701762 [FA16DE07]">
      <seq>gaggtacctcatctcaatggccactgcaccatctgatgtgcttgctgttgagcttctacagcgtgaatgccacgtgaagcaacctttacgggtagttccactttttgagaaattggatgatctggatgctgctcctgctgctattgcacgtcttttttcaattgagtggtacaaaaaccgcattaatgggaagcaagaagtcatgattggctactcagactctggaaaggatgctggtcggctgtcggcagcatggcagctatataaggctcaagaggagcttataaaagttgccaaacaatatgacgtgaagctaattatgttccatggcagaggtggtacagttggaagaggaggtggtcctagccatcttgctatattatctcagccacctgatacgattcagggatctcttcgcgtaacagttcaaggtgaggttattgagcaatcatttggggaggaacacttgtgttttaggacactccaacgtttcacttctgccaccctagaacatggaatgtatccacctttccccccaaagccagaatggcgtgcacttctggatgaaatttctgttgttgctacagagaagtataggtcaatagtattcaaggaaccccgatttgtcgagtacttccgcctggcaacacccgagctggagtatggtcgaatgaacattggtagccgtccatcaaagcgtaaacgaaatggaggcatagaaacacttagagccattccatggatctttgcatggacccagactaggtttcatctgccggtctggcttggctttggggcagcatttaagtatgcacttaacaaggataaaaaaaacctcaatatgctgcgggacatgcacaaaaaatggccattttttaaagttactgctgatttgattgagatggtgtttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="99809" stop="101432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100105" g_stop="100747" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100748" i_stop="100863" i_length="116">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100864" g_stop="101132" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="912" r_length="269" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E701762" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>912</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100105" e_stop="100747"/>
          <exon e_start="100864" e_stop="101132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATACATCATCTCAATGGCCACTGCACCATCTGATGTGCTTGCTGTTGAGCTTCTACAGCGTGAATGCCACGTGAAGCAACCTTTACGGGTAGTTCCACTTTTTGAGAAATTGGATGATCTGGATGCTGCTCCTGCTGCTATTGCACGTCTTTTTTCAATTGAGTGGTACAAAAACCGCATTAATGGGAAGCAAGAAGTCATGATTGGCTACTCAGACTCTGGAAAGGATGCTGGTCGGCTGTCGGCAGCATGGCAGCTATATAAGGCTCAAGAGGAGCTTATAAAAGTTGCCAAACAATATGACGTGAAGCTAATTATGTTCCATGGCAGAGGTGGTACAGTTGGAAGAGGAGGTGGTCCTAGCCATCTTGCTATATTATCTCAGCCACCTGATACGATTCAGGGATCTCTTCGCGTAACAGTTCAAGGTGAGGTTATTGAGCAATCATTTGGGGAGGAACACTTGTGTTTTAGGACACTCCAACGTTTCACTTCTGCCACCCTAGAACATGGAATGTATCCACCTTTCCCCCCAAAGCCAGAATGGCGTGCACTTCTGGATGAAATTTCTGTTGTTGCTACAGAGAAGTATAGGTCAATAGTATTCAAGGAACCCCGATTTGTCGAGTACTTCCGCCTGGTCAGTGTGCTAGGAAAATGCAATATATTACTTATCTAACAATAGGTGTTACCAAAAGGTAACAAATATTTCTACAACTTTAACAAGTTATTTTTTCTTTTGGATCACAATTGCAGGCAACACCCGAGCTGGAGTATGGTCGAATGAACATTGGTAGCCGTCCATCAAAGCGTAAACGAAATGGAGGCATAGAAACACTTAGAGCCATTCCATGGATATTTGCATGGACCCAGACTAGGTTTCATCTGCCGGTCTGGCTTGGCTTTGGGGCAGCATTTAAGTATGCACTTAACAAGGATAAAAAAAACCTCAATATGCTGCGGGACATGCACAAAAAATGGCCATTTTTTAGAGTTACTGCTGATTTGATTGAGATGGTGTTTGC</genome_strand>
        <mrna_strand>GAGGTACCTCATCTCAATGGCCACTGCACCATCTGATGTGCTTGCTGTTGAGCTTCTACAGCGTGAATGCCACGTGAAGCAACCTTTACGGGTAGTTCCACTTTTTGAGAAATTGGATGATCTGGATGCTGCTCCTGCTGCTATTGCACGTCTTTTTTCAATTGAGTGGTACAAAAACCGCATTAATGGGAAGCAAGAAGTCATGATTGGCTACTCAGACTCTGGAAAGGATGCTGGTCGGCTGTCGGCAGCATGGCAGCTATATAAGGCTCAAGAGGAGCTTATAAAAGTTGCCAAACAATATGACGTGAAGCTAATTATGTTCCATGGCAGAGGTGGTACAGTTGGAAGAGGAGGTGGTCCTAGCCATCTTGCTATATTATCTCAGCCACCTGATACGATTCAGGGATCTCTTCGCGTAACAGTTCAAGGTGAGGTTATTGAGCAATCATTTGGGGAGGAACACTTGTGTTTTAGGACACTCCAACGTTTCACTTCTGCCACCCTAGAACATGGAATGTATCCACCTTTCCCCCCAAAGCCAGAATGGCGTGCACTTCTGGATGAAATTTCTGTTGTTGCTACAGAGAAGTATAGGTCAATAGTATTCAAGGAACCCCGATTTGTCGAGTACTTCCGCCTG....................................................................................................................GCAACACCCGAGCTGGAGTATGGTCGAATGAACATTGGTAGCCGTCCATCAAAGCGTAAACGAAATGGAGGCATAGAAACACTTAGAGCCATTCCATGGATCTTTGCATGGACCCAGACTAGGTTTCATCTGCCGGTCTGGCTTGGCTTTGGGGCAGCATTTAAGTATGCACTTAACAAGGATAAAAAAAACCTCAATATGCTGCGGGACATGCACAAAAAATGGCCATTTTTTAAAGTTACTGCTGATTTGATTGAGATGGTGTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E270057" ref_strand="+" ref_description="SGN-E270057 [cLEM-7-I3]">
      <seq>tctcaatggccactgcaccatctgatgtgcttgctgttgagcttctacagcgtgaatgccacgtgaagcaacctttacgggtagttccactttttgagaaattggatgatctggatgctgctcctgctgctattgcacgtcttttttcaattgagtggtacaaaaaccgcattaatgggaagcaagaagtcatgattggctactcagactctggaaaggatgctggtcggctgtcggcagcatggcagctatataaggctcaagaggagcttataaaagttgccaaacaatatgacgtgaagctaattatgttccatggcagaggtggtacagttggaagaggaggtggtcctagccatcttgctatattatctcagccacctgatacgattcagggatctcttcgcgtaacagttcaaggtgaggttattgagcaatcatttggggaggaacacttgtgttttaggacactccaacgtttcacttctgccaccctagaacatggaatgtatccacctttccccccaaagccagaatggcgtgcacttctggatgaaatttctgttgttgctacagagaagtataggtcaatagtattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="99816" stop="101015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100116" g_stop="100715" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E270057" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100116" e_stop="100715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAATGGCCACTGCACCATCTGATGTGCTTGCTGTTGAGCTTCTACAGCGTGAATGCCACGTGAAGCAACCTTTACGGGTAGTTCCACTTTTTGAGAAATTGGATGATCTGGATGCTGCTCCTGCTGCTATTGCACGTCTTTTTTCAATTGAGTGGTACAAAAACCGCATTAATGGGAAGCAAGAAGTCATGATTGGCTACTCAGACTCTGGAAAGGATGCTGGTCGGCTGTCGGCAGCATGGCAGCTATATAAGGCTCAAGAGGAGCTTATAAAAGTTGCCAAACAATATGACGTGAAGCTAATTATGTTCCATGGCAGAGGTGGTACAGTTGGAAGAGGAGGTGGTCCTAGCCATCTTGCTATATTATCTCAGCCACCTGATACGATTCAGGGATCTCTTCGCGTAACAGTTCAAGGTGAGGTTATTGAGCAATCATTTGGGGAGGAACACTTGTGTTTTAGGACACTCCAACGTTTCACTTCTGCCACCCTAGAACATGGAATGTATCCACCTTTCCCCCCAAAGCCAGAATGGCGTGCACTTCTGGATGAAATTTCTGTTGTTGCTACAGAGAAGTATAGGTCAATAGTATTCA</genome_strand>
        <mrna_strand>TCTCAATGGCCACTGCACCATCTGATGTGCTTGCTGTTGAGCTTCTACAGCGTGAATGCCACGTGAAGCAACCTTTACGGGTAGTTCCACTTTTTGAGAAATTGGATGATCTGGATGCTGCTCCTGCTGCTATTGCACGTCTTTTTTCAATTGAGTGGTACAAAAACCGCATTAATGGGAAGCAAGAAGTCATGATTGGCTACTCAGACTCTGGAAAGGATGCTGGTCGGCTGTCGGCAGCATGGCAGCTATATAAGGCTCAAGAGGAGCTTATAAAAGTTGCCAAACAATATGACGTGAAGCTAATTATGTTCCATGGCAGAGGTGGTACAGTTGGAAGAGGAGGTGGTCCTAGCCATCTTGCTATATTATCTCAGCCACCTGATACGATTCAGGGATCTCTTCGCGTAACAGTTCAAGGTGAGGTTATTGAGCAATCATTTGGGGAGGAACACTTGTGTTTTAGGACACTCCAACGTTTCACTTCTGCCACCCTAGAACATGGAATGTATCCACCTTTCCCCCCAAAGCCAGAATGGCGTGCACTTCTGGATGAAATTTCTGTTGTTGCTACAGAGAAGTATAGGTCAATAGTATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E245603" ref_strand="+" ref_description="SGN-E245603 [cLEF-43-F23]">
      <seq>tctggaaaggatgctggccggctgtgggcagcatggcagctatataaggctcaagaggagcttataaaagttgccaaacaatatgacgtgaagctaattatgttccatggcacaggtggttcacatggaagaggaggtggtcctagccatcttgctatattatctcatccacctgatacgattcaaggatctcttcgcgtaacagttcaaggtgaggatatagagcaatcatttggggaggaacacttgtgttttaggacactccaacgtttcacttctgccaccctagaacatggaatgtatccacctttccccccaaagccagaatggcgcgcacttctggatgaaatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="100025" stop="100978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100325" g_stop="100678" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E245603" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100325" e_stop="100678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGAAAGGATGCTGGTCGGCTGTCGGCAGCATGGCAGCTATATAAGGCTCAAGAGGAGCTTATAAAAGTTGCCAAACAATATGACGTGAAGCTAATTATGTTCCATGGCAGAGGTGGTACAGTTGGAAGAGGAGGTGGTCCTAGCCATCTTGCTATATTATCTCAGCCACCTGATACGATTCAGGGATCTCTTCGCGTAACAGTTCAAGGTGAGGTTATTGAGCAATCATTTGGGGAGGAACACTTGTGTTTTAGGACACTCCAACGTTTCACTTCTGCCACCCTAGAACATGGAATGTATCCACCTTTCCCCCCAAAGCCAGAATGGCGTGCACTTCTGGATGAAATTTCT</genome_strand>
        <mrna_strand>TCTGGAAAGGATGCTGGCCGGCTGTGGGCAGCATGGCAGCTATATAAGGCTCAAGAGGAGCTTATAAAAGTTGCCAAACAATATGACGTGAAGCTAATTATGTTCCATGGCACAGGTGGTTCACATGGAAGAGGAGGTGGTCCTAGCCATCTTGCTATATTATCTCATCCACCTGATACGATTCAAGGATCTCTTCGCGTAACAGTTCAAGGTGAGGATATAGAGCAATCATTTGGGGAGGAACACTTGTGTTTTAGGACACTCCAACGTTTCACTTCTGCCACCCTAGAACATGGAATGTATCCACCTTTCCCCCCAAAGCCAGAATGGCGCGCACTTCTGGATGAAATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E370227" ref_strand="+" ref_description="SGN-E370227 [TUS-28-E8]">
      <seq>gctatataaggctcaagaggagcttataaaagttgccaaacaatatgacgtgaagctaattatgttccatggcagaggtggtacagttggaagaggaggtggtcctagccatcttgctatattatctcagccacctgatacgattcagggatctcttcgcgtaacagttcaaggtgaggttattgagcaatcatttggggaggaacacttgtgttttaggacactccaacgtttcacttctgccaccctagaacatggaatgtatccacctttccccccaaagccagaatggcgtgcacttctggatgaaatttctgttgttgctacagagaagtataggtcaatagtattcaaggaaccccgatttgtcgagtacttccgcctggcaacacccgagctggagtatggtcgaatgaacattggtagccgtccatcaaagcgtaaacgaaatggaggcatagaaacacttagagccattccatggatatttgcatggacccagactaggtttcatctgccggtctggcttggctttggggcagcatttaagtatgcacttaacaaggataaaaaaaacctcaatatgctgcgggacatgcacaaaaaatggccattttttagagttactgctgatttgattgagatggtgtttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="100063" stop="101432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100363" g_stop="100747" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100748" i_stop="100863" i_length="116">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100864" g_stop="101132" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="654" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E370227" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100363" e_stop="100747"/>
          <exon e_start="100864" e_stop="101132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATATAAGGCTCAAGAGGAGCTTATAAAAGTTGCCAAACAATATGACGTGAAGCTAATTATGTTCCATGGCAGAGGTGGTACAGTTGGAAGAGGAGGTGGTCCTAGCCATCTTGCTATATTATCTCAGCCACCTGATACGATTCAGGGATCTCTTCGCGTAACAGTTCAAGGTGAGGTTATTGAGCAATCATTTGGGGAGGAACACTTGTGTTTTAGGACACTCCAACGTTTCACTTCTGCCACCCTAGAACATGGAATGTATCCACCTTTCCCCCCAAAGCCAGAATGGCGTGCACTTCTGGATGAAATTTCTGTTGTTGCTACAGAGAAGTATAGGTCAATAGTATTCAAGGAACCCCGATTTGTCGAGTACTTCCGCCTGGTCAGTGTGCTAGGAAAATGCAATATATTACTTATCTAACAATAGGTGTTACCAAAAGGTAACAAATATTTCTACAACTTTAACAAGTTATTTTTTCTTTTGGATCACAATTGCAGGCAACACCCGAGCTGGAGTATGGTCGAATGAACATTGGTAGCCGTCCATCAAAGCGTAAACGAAATGGAGGCATAGAAACACTTAGAGCCATTCCATGGATATTTGCATGGACCCAGACTAGGTTTCATCTGCCGGTCTGGCTTGGCTTTGGGGCAGCATTTAAGTATGCACTTAACAAGGATAAAAAAAACCTCAATATGCTGCGGGACATGCACAAAAAATGGCCATTTTTTAGAGTTACTGCTGATTTGATTGAGATGGTGTTTGC</genome_strand>
        <mrna_strand>GCTATATAAGGCTCAAGAGGAGCTTATAAAAGTTGCCAAACAATATGACGTGAAGCTAATTATGTTCCATGGCAGAGGTGGTACAGTTGGAAGAGGAGGTGGTCCTAGCCATCTTGCTATATTATCTCAGCCACCTGATACGATTCAGGGATCTCTTCGCGTAACAGTTCAAGGTGAGGTTATTGAGCAATCATTTGGGGAGGAACACTTGTGTTTTAGGACACTCCAACGTTTCACTTCTGCCACCCTAGAACATGGAATGTATCCACCTTTCCCCCCAAAGCCAGAATGGCGTGCACTTCTGGATGAAATTTCTGTTGTTGCTACAGAGAAGTATAGGTCAATAGTATTCAAGGAACCCCGATTTGTCGAGTACTTCCGCCTG....................................................................................................................GCAACACCCGAGCTGGAGTATGGTCGAATGAACATTGGTAGCCGTCCATCAAAGCGTAAACGAAATGGAGGCATAGAAACACTTAGAGCCATTCCATGGATATTTGCATGGACCCAGACTAGGTTTCATCTGCCGGTCTGGCTTGGCTTTGGGGCAGCATTTAAGTATGCACTTAACAAGGATAAAAAAAACCTCAATATGCTGCGGGACATGCACAAAAAATGGCCATTTTTTAGAGTTACTGCTGATTTGATTGAGATGGTGTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E270632" ref_strand="+" ref_description="SGN-E270632 [cLEM-6-G9]">
      <seq>ttataaaagtngccaaacgggatgatttggagctaattatgttccatcgcagangtcgtacagttggaagaggaggtggtcctagccatcttgctatattatctcagccacctgatacgattcagggatctcttcgcgtaacagttcaaggtgaggttattgagcaatcatttggggaggaacacttgtgttttaggacactccaacgtttcacttctgccaccctagaacatggaatgtatccacctttccccccaaagccagaatggcgtgcacttctggatgaaatttctgttgttgctacagagaagtataggtcaatagtattcaaggaaccccgatttgtcgagtacttccgcctggcaacacccgagctggagtatggtcgaatgaacattggtagccgtccatcaaagcgtaaacgaaatggaggcatagaaacacttagagccattccatggatatttgcatggacccagactaggtttcatctgccggtctggcttggctttggggcagcatttaagtatgcacttaacaaggataaaaaaaacctcaatatgctgcgggacatgcacaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="100107" stop="101386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100386" g_stop="100747" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100748" i_stop="100863" i_length="116">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100864" g_stop="101086" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="585" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E270632" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100386" e_stop="100747"/>
          <exon e_start="100864" e_stop="101086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAAAAGTTGCCAAACAATATGACGTGAAGCTAATTATGTTCCATGGCAGAGGTGGTACAGTTGGAAGAGGAGGTGGTCCTAGCCATCTTGCTATATTATCTCAGCCACCTGATACGATTCAGGGATCTCTTCGCGTAACAGTTCAAGGTGAGGTTATTGAGCAATCATTTGGGGAGGAACACTTGTGTTTTAGGACACTCCAACGTTTCACTTCTGCCACCCTAGAACATGGAATGTATCCACCTTTCCCCCCAAAGCCAGAATGGCGTGCACTTCTGGATGAAATTTCTGTTGTTGCTACAGAGAAGTATAGGTCAATAGTATTCAAGGAACCCCGATTTGTCGAGTACTTCCGCCTGGTCAGTGTGCTAGGAAAATGCAATATATTACTTATCTAACAATAGGTGTTACCAAAAGGTAACAAATATTTCTACAACTTTAACAAGTTATTTTTTCTTTTGGATCACAATTGCAGGCAACACCCGAGCTGGAGTATGGTCGAATGAACATTGGTAGCCGTCCATCAAAGCGTAAACGAAATGGAGGCATAGAAACACTTAGAGCCATTCCATGGATATTTGCATGGACCCAGACTAGGTTTCATCTGCCGGTCTGGCTTGGCTTTGGGGCAGCATTTAAGTATGCACTTAACAAGGATAAAAAAAACCTCAATATGCTGCGGGACATGCACAAAAAAT</genome_strand>
        <mrna_strand>TTATAAAAGTNGCCAAACGGGATGATTTGGAGCTAATTATGTTCCATCGCAGANGTCGTACAGTTGGAAGAGGAGGTGGTCCTAGCCATCTTGCTATATTATCTCAGCCACCTGATACGATTCAGGGATCTCTTCGCGTAACAGTTCAAGGTGAGGTTATTGAGCAATCATTTGGGGAGGAACACTTGTGTTTTAGGACACTCCAACGTTTCACTTCTGCCACCCTAGAACATGGAATGTATCCACCTTTCCCCCCAAAGCCAGAATGGCGTGCACTTCTGGATGAAATTTCTGTTGTTGCTACAGAGAAGTATAGGTCAATAGTATTCAAGGAACCCCGATTTGTCGAGTACTTCCGCCTG....................................................................................................................GCAACACCCGAGCTGGAGTATGGTCGAATGAACATTGGTAGCCGTCCATCAAAGCGTAAACGAAATGGAGGCATAGAAACACTTAGAGCCATTCCATGGATATTTGCATGGACCCAGACTAGGTTTCATCTGCCGGTCTGGCTTGGCTTTGGGGCAGCATTTAAGTATGCACTTAACAAGGATAAAAAAAACCTCAATATGCTGCGGGACATGCACAAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E697258" ref_strand="+" ref_description="SGN-E697258 [FA02AB02]">
      <seq>cgaacaatatgacgtgaagctaattatgttccatggcagaggtggtacagttggaagaggaggtggtcctagccatcttgctatattatctcagccacctgatacgattcagggatctcttcgcgtaacagttcaaggtgaggttattgagcaatcatttggggaggaacacttgtgttttaggacactccaacgtttcacttctgccaccctagaacatggaatgtatccacctttccccccaaagccagaatggcgtgcacttctggatgaaatttctgttgttgctacagagaagtataggtcaatagtattcaaggaaccccgatttgtcgagtacttccgcctggcaacacccgagctggagtatggtcgaatgaacattggtagccgtccatcaaagcgtaaacgaaatggaggcatagaaacacttagagccattccatggatctttgcatggacccagactaggtttcatctgccggtctggcttggctttggggcagcatttaagtatgcacttaacaaggataaaaaaaacctcaatatgctgcgggacatgcacaaaaaatggccattttttagagttactgctgatttgattgagatggtgtttgctaagggagaccccggcattgctgctttatacgacaagcttctggtttctgaagatttgtggtccttcggtgagcttttgaggtctgactatgaggagacaaagagcctcctgcttaaggttgctggacacaaggaactttctggagaacgatccctccttaaaacaacgaatcaggctgcgtgattcctatatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="100099" stop="101725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100399" g_stop="100747" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100748" i_stop="100863" i_length="116">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100864" g_stop="101250" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="736" r_length="387" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101251" i_stop="101348" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101349" g_stop="101425" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="814" r_length="78" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E697258" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100399" e_stop="100747"/>
          <exon e_start="100864" e_stop="101250"/>
          <exon e_start="101349" e_stop="101425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACAATATGACGTGAAGCTAATTATGTTCCATGGCAGAGGTGGTACAGTTGGAAGAGGAGGTGGTCCTAGCCATCTTGCTATATTATCTCAGCCACCTGATACGATTCAGGGATCTCTTCGCGTAACAGTTCAAGGTGAGGTTATTGAGCAATCATTTGGGGAGGAACACTTGTGTTTTAGGACACTCCAACGTTTCACTTCTGCCACCCTAGAACATGGAATGTATCCACCTTTCCCCCCAAAGCCAGAATGGCGTGCACTTCTGGATGAAATTTCTGTTGTTGCTACAGAGAAGTATAGGTCAATAGTATTCAAGGAACCCCGATTTGTCGAGTACTTCCGCCTGGTCAGTGTGCTAGGAAAATGCAATATATTACTTATCTAACAATAGGTGTTACCAAAAGGTAACAAATATTTCTACAACTTTAACAAGTTATTTTTTCTTTTGGATCACAATTGCAGGCAACACCCGAGCTGGAGTATGGTCGAATGAACATTGGTAGCCGTCCATCAAAGCGTAAACGAAATGGAGGCATAGAAACACTTAGAGCCATTCCATGGATATTTGCATGGACCCAGACTAGGTTTCATCTGCCGGTCTGGCTTGGCTTTGGGGCAGCATTTAAGTATGCACTTAACAAGGATAAAAAAAACCTCAATATGCTGCGGGACATGCACAAAAAATGGCCATTTTTTAGAGTTACTGCTGATTTGATTGAGATGGTGTTTGCTAAGGGAGACCCCGGCATTGCTGCTTTATACGACAAGCTTCTGGTTTCTGAAGATTTGTGGTCCTTCGGTGAGCTTTTGAGGTCTGACTATGAGGAGACAAAGAGCCTCCTGCTTAAGGTAAATTACTTTTCACCAAGTTCTCGCACTTAACATACGTTTTTACTCATCATGCTTGATCGCATGATATCCATGTTATCTATGTTTCTTTTGTATAGGTTGCTGGACACAAGGAAC-TTCTGGAGAACGATCCCTCCTTAAAACAACGACTCAGGCTGCGTGATTCCTATATCAC</genome_strand>
        <mrna_strand>CGAACAATATGACGTGAAGCTAATTATGTTCCATGGCAGAGGTGGTACAGTTGGAAGAGGAGGTGGTCCTAGCCATCTTGCTATATTATCTCAGCCACCTGATACGATTCAGGGATCTCTTCGCGTAACAGTTCAAGGTGAGGTTATTGAGCAATCATTTGGGGAGGAACACTTGTGTTTTAGGACACTCCAACGTTTCACTTCTGCCACCCTAGAACATGGAATGTATCCACCTTTCCCCCCAAAGCCAGAATGGCGTGCACTTCTGGATGAAATTTCTGTTGTTGCTACAGAGAAGTATAGGTCAATAGTATTCAAGGAACCCCGATTTGTCGAGTACTTCCGCCTG....................................................................................................................GCAACACCCGAGCTGGAGTATGGTCGAATGAACATTGGTAGCCGTCCATCAAAGCGTAAACGAAATGGAGGCATAGAAACACTTAGAGCCATTCCATGGATCTTTGCATGGACCCAGACTAGGTTTCATCTGCCGGTCTGGCTTGGCTTTGGGGCAGCATTTAAGTATGCACTTAACAAGGATAAAAAAAACCTCAATATGCTGCGGGACATGCACAAAAAATGGCCATTTTTTAGAGTTACTGCTGATTTGATTGAGATGGTGTTTGCTAAGGGAGACCCCGGCATTGCTGCTTTATACGACAAGCTTCTGGTTTCTGAAGATTTGTGGTCCTTCGGTGAGCTTTTGAGGTCTGACTATGAGGAGACAAAGAGCCTCCTGCTTAAG..................................................................................................GTTGCTGGACACAAGGAACTTTCTGGAGAACGATCCCTCCTTAAAACAACGAATCAGGCTGCGTGATTCCTATATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E272373" ref_strand="+" ref_description="SGN-E272373 [cLEM-19-O13]">
      <seq>tggtcctatttatcttgctatattatctcacccggctgatacgattcagggatctcttcgcgtaacagttcaaggtgaggttattgagcaatcatttggggaggaacacttgtgttttaggacactccaacgtttcacttctgccaccctagaacatggaatgtatccacctttccccccaaagccagaatggcgtgcacttctggatgaaatttctgttgttgctacagagaagtataggtcaatagtattcaaggaaccccgatttgtcgagtacttccgcctggcaacacccgagctggagtatggtcgaatgaacattggtatccgtccatcaaagcgtaaaccaaaatggaggcatagaaacacttaaaacccttccatggatatttgcatggacccagactaggtttcatctgccggtcttggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="100173" stop="101306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100462" g_stop="100747" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100748" i_stop="100863" i_length="116">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100864" g_stop="101006" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="431" r_length="145" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E272373" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100462" e_stop="100747"/>
          <exon e_start="100864" e_stop="101006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTCCTAGCCATCTTGCTATATTATCTCAGCCACCTGATACGATTCAGGGATCTCTTCGCGTAACAGTTCAAGGTGAGGTTATTGAGCAATCATTTGGGGAGGAACACTTGTGTTTTAGGACACTCCAACGTTTCACTTCTGCCACCCTAGAACATGGAATGTATCCACCTTTCCCCCCAAAGCCAGAATGGCGTGCACTTCTGGATGAAATTTCTGTTGTTGCTACAGAGAAGTATAGGTCAATAGTATTCAAGGAACCCCGATTTGTCGAGTACTTCCGCCTGGTCAGTGTGCTAGGAAAATGCAATATATTACTTATCTAACAATAGGTGTTACCAAAAGGTAACAAATATTTCTACAACTTTAACAAGTTATTTTTTCTTTTGGATCACAATTGCAGGCAACACCCGAGCTGGAGTATGGTCGAATGAACATTGGTAGCCGTCCATCAAAGCGTAAACGAAA-TGGAGGCATAGAAACACTTAGAGCCATTCCATGGATATTTGCATGGACCCAGACTAGGTTTCATCTGCCGGTC-TGGCT</genome_strand>
        <mrna_strand>TGGTCCTATTTATCTTGCTATATTATCTCACCCGGCTGATACGATTCAGGGATCTCTTCGCGTAACAGTTCAAGGTGAGGTTATTGAGCAATCATTTGGGGAGGAACACTTGTGTTTTAGGACACTCCAACGTTTCACTTCTGCCACCCTAGAACATGGAATGTATCCACCTTTCCCCCCAAAGCCAGAATGGCGTGCACTTCTGGATGAAATTTCTGTTGTTGCTACAGAGAAGTATAGGTCAATAGTATTCAAGGAACCCCGATTTGTCGAGTACTTCCGCCTG....................................................................................................................GCAACACCCGAGCTGGAGTATGGTCGAATGAACATTGGTATCCGTCCATCAAAGCGTAAACCAAAATGGAGGCATAGAAACACTTAAAACCCTTCCATGGATATTTGCATGGACCCAGACTAGGTTTCATCTGCCGGTCTTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E248010" ref_strand="+" ref_description="SGN-E248010 [cLEF-47-E6]">
      <seq>acagttcaaggtgaggttattgagcaatcatttggggaggagcacttgtggtttaggacactccaacgtttcacttctgccaccctagaacatggaatgtatccacctttccccccaaagccagaatggcgtgcacttctggatgaaatttctgttgttgctacagagaagtataggtcaatagtattcaaggaaccccgatttgtcgagtacttccgcctggcaacacccgagctggagtatggtcgaatgaacattggtagccgtccatcaaagcgtaaacgaaatggaggcatagaaacacttagagccattccatggatatttgcatggacccagactaggtttcatctgccggtctggcttggctttggggcagcatttaagtatgcacttaacaaggataaaaaaaacctcaatatgctgcgggacatgcacaaaaaatggccattttttagagttactgctgatttgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="100226" stop="101419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100526" g_stop="100747" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100748" i_stop="100863" i_length="116">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100864" g_stop="101119" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="478" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E248010" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100526" e_stop="100747"/>
          <exon e_start="100864" e_stop="101119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTTCAAGGTGAGGTTATTGAGCAATCATTTGGGGAGGAACACTTGTGTTTTAGGACACTCCAACGTTTCACTTCTGCCACCCTAGAACATGGAATGTATCCACCTTTCCCCCCAAAGCCAGAATGGCGTGCACTTCTGGATGAAATTTCTGTTGTTGCTACAGAGAAGTATAGGTCAATAGTATTCAAGGAACCCCGATTTGTCGAGTACTTCCGCCTGGTCAGTGTGCTAGGAAAATGCAATATATTACTTATCTAACAATAGGTGTTACCAAAAGGTAACAAATATTTCTACAACTTTAACAAGTTATTTTTTCTTTTGGATCACAATTGCAGGCAACACCCGAGCTGGAGTATGGTCGAATGAACATTGGTAGCCGTCCATCAAAGCGTAAACGAAATGGAGGCATAGAAACACTTAGAGCCATTCCATGGATATTTGCATGGACCCAGACTAGGTTTCATCTGCCGGTCTGGCTTGGCTTTGGGGCAGCATTTAAGTATGCACTTAACAAGGATAAAAAAAACCTCAATATGCTGCGGGACATGCACAAAAAATGGCCATTTTTTAGAGTTACTGCTGATTTGATTG</genome_strand>
        <mrna_strand>ACAGTTCAAGGTGAGGTTATTGAGCAATCATTTGGGGAGGAGCACTTGTGGTTTAGGACACTCCAACGTTTCACTTCTGCCACCCTAGAACATGGAATGTATCCACCTTTCCCCCCAAAGCCAGAATGGCGTGCACTTCTGGATGAAATTTCTGTTGTTGCTACAGAGAAGTATAGGTCAATAGTATTCAAGGAACCCCGATTTGTCGAGTACTTCCGCCTG....................................................................................................................GCAACACCCGAGCTGGAGTATGGTCGAATGAACATTGGTAGCCGTCCATCAAAGCGTAAACGAAATGGAGGCATAGAAACACTTAGAGCCATTCCATGGATATTTGCATGGACCCAGACTAGGTTTCATCTGCCGGTCTGGCTTGGCTTTGGGGCAGCATTTAAGTATGCACTTAACAAGGATAAAAAAAACCTCAATATGCTGCGGGACATGCACAAAAAATGGCCATTTTTTAGAGTTACTGCTGATTTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E271169" ref_strand="+" ref_description="SGN-E271169 [cLEM-5-A15]">
      <seq>aggaacacttgtgttttaggacactccaacgtttcacttctgccaccctagaacatggaatgtatccacctttccccccaaagccagaatggcgtgcacttctggatgaaatttctgttgttgctacagagaagtataggtcaatagtattcaaggaaccccgatttgtcgagtacttccgcctggcaacacccgagctggagtatggtcgaatgaacattggtagccgtccatcaaagcgtaaacgaaatggaggcatagaaacacttagagccattccatggatatttgcatggacccagactaggtttcatctgccggtctggcttggctttggggcagcatttaagtatgcacttaacaaggataaaaaaaacctcaatatgctgcgggacatgcacaaaaaatggccattttttagagttactgctgatttgattgagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="100263" stop="101423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100563" g_stop="100747" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100748" i_stop="100863" i_length="116">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100864" g_stop="101123" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="445" r_length="260" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E271169" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100563" e_stop="100747"/>
          <exon e_start="100864" e_stop="101123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAACACTTGTGTTTTAGGACACTCCAACGTTTCACTTCTGCCACCCTAGAACATGGAATGTATCCACCTTTCCCCCCAAAGCCAGAATGGCGTGCACTTCTGGATGAAATTTCTGTTGTTGCTACAGAGAAGTATAGGTCAATAGTATTCAAGGAACCCCGATTTGTCGAGTACTTCCGCCTGGTCAGTGTGCTAGGAAAATGCAATATATTACTTATCTAACAATAGGTGTTACCAAAAGGTAACAAATATTTCTACAACTTTAACAAGTTATTTTTTCTTTTGGATCACAATTGCAGGCAACACCCGAGCTGGAGTATGGTCGAATGAACATTGGTAGCCGTCCATCAAAGCGTAAACGAAATGGAGGCATAGAAACACTTAGAGCCATTCCATGGATATTTGCATGGACCCAGACTAGGTTTCATCTGCCGGTCTGGCTTGGCTTTGGGGCAGCATTTAAGTATGCACTTAACAAGGATAAAAAAAACCTCAATATGCTGCGGGACATGCACAAAAAATGGCCATTTTTTAGAGTTACTGCTGATTTGATTGAGAT</genome_strand>
        <mrna_strand>AGGAACACTTGTGTTTTAGGACACTCCAACGTTTCACTTCTGCCACCCTAGAACATGGAATGTATCCACCTTTCCCCCCAAAGCCAGAATGGCGTGCACTTCTGGATGAAATTTCTGTTGTTGCTACAGAGAAGTATAGGTCAATAGTATTCAAGGAACCCCGATTTGTCGAGTACTTCCGCCTG....................................................................................................................GCAACACCCGAGCTGGAGTATGGTCGAATGAACATTGGTAGCCGTCCATCAAAGCGTAAACGAAATGGAGGCATAGAAACACTTAGAGCCATTCCATGGATATTTGCATGGACCCAGACTAGGTTTCATCTGCCGGTCTGGCTTGGCTTTGGGGCAGCATTTAAGTATGCACTTAACAAGGATAAAAAAAACCTCAATATGCTGCGGGACATGCACAAAAAATGGCCATTTTTTAGAGTTACTGCTGATTTGATTGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E245087" ref_strand="+" ref_description="SGN-E245087 [cLEF-13-H23]">
      <seq>acttctggatgaaatttctgttgttgctacagagaagtataggtcaatagtattcaaggaaccccgatttgtcgagtacttccgcctggcaacacccgagctggagtatggtcgaatgaacattggtagccgtccatcaaagcgtaaacgaaatggaggcatagaaacacttagagccattccatggatatttgcatggacccagactaggtttcatctgccggtctggcttggctttggggcagcatttaagtatgcacttaacaaggataaaaaaaacctcaatatgctgcgggacatgcacaaaaaatggccattttttagagttactgctgatttgattgagatggtgtttgctaagggagaccccggcattgctgctttatacgacaagcttctggtttctgaagatttgtggtccttcggtgagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="100360" stop="101509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100660" g_stop="100747" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100748" i_stop="100863" i_length="116">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100864" g_stop="101209" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="434" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E245087" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100660" e_stop="100747"/>
          <exon e_start="100864" e_stop="101209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCTGGATGAAATTTCTGTTGTTGCTACAGAGAAGTATAGGTCAATAGTATTCAAGGAACCCCGATTTGTCGAGTACTTCCGCCTGGTCAGTGTGCTAGGAAAATGCAATATATTACTTATCTAACAATAGGTGTTACCAAAAGGTAACAAATATTTCTACAACTTTAACAAGTTATTTTTTCTTTTGGATCACAATTGCAGGCAACACCCGAGCTGGAGTATGGTCGAATGAACATTGGTAGCCGTCCATCAAAGCGTAAACGAAATGGAGGCATAGAAACACTTAGAGCCATTCCATGGATATTTGCATGGACCCAGACTAGGTTTCATCTGCCGGTCTGGCTTGGCTTTGGGGCAGCATTTAAGTATGCACTTAACAAGGATAAAAAAAACCTCAATATGCTGCGGGACATGCACAAAAAATGGCCATTTTTTAGAGTTACTGCTGATTTGATTGAGATGGTGTTTGCTAAGGGAGACCCCGGCATTGCTGCTTTATACGACAAGCTTCTGGTTTCTGAAGATTTGTGGTCCTTCGGTGAGCTTT</genome_strand>
        <mrna_strand>ACTTCTGGATGAAATTTCTGTTGTTGCTACAGAGAAGTATAGGTCAATAGTATTCAAGGAACCCCGATTTGTCGAGTACTTCCGCCTG....................................................................................................................GCAACACCCGAGCTGGAGTATGGTCGAATGAACATTGGTAGCCGTCCATCAAAGCGTAAACGAAATGGAGGCATAGAAACACTTAGAGCCATTCCATGGATATTTGCATGGACCCAGACTAGGTTTCATCTGCCGGTCTGGCTTGGCTTTGGGGCAGCATTTAAGTATGCACTTAACAAGGATAAAAAAAACCTCAATATGCTGCGGGACATGCACAAAAAATGGCCATTTTTTAGAGTTACTGCTGATTTGATTGAGATGGTGTTTGCTAAGGGAGACCCCGGCATTGCTGCTTTATACGACAAGCTTCTGGTTTCTGAAGATTTGTGGTCCTTCGGTGAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E245077" ref_strand="+" ref_description="SGN-E245077 [cLEF-13-D21]">
      <seq>acttctggatgaaatttctgttgttgctacagagaagtataggtcaatagtattcaaggaaccccgatttgtcgagtacttccgcctggcaacacccgagctggagtatggtcgaatgaacattggtagccgtccatcaaagcgtaaacgaaatggaggcatagaaacacttagagccattccatggatatttgcatggacccagactaggtttcatctgccggtctggcttggctttggggcagcatttaagtatgcacttaacaaggataaaaaaaacctcaatatgctgcgggacatgcacaaaaaatggccattttttagagttactgctgatttgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="100360" stop="101419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100660" g_stop="100747" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100748" i_stop="100863" i_length="116">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100864" g_stop="101119" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="344" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E245077" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100660" e_stop="100747"/>
          <exon e_start="100864" e_stop="101119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCTGGATGAAATTTCTGTTGTTGCTACAGAGAAGTATAGGTCAATAGTATTCAAGGAACCCCGATTTGTCGAGTACTTCCGCCTGGTCAGTGTGCTAGGAAAATGCAATATATTACTTATCTAACAATAGGTGTTACCAAAAGGTAACAAATATTTCTACAACTTTAACAAGTTATTTTTTCTTTTGGATCACAATTGCAGGCAACACCCGAGCTGGAGTATGGTCGAATGAACATTGGTAGCCGTCCATCAAAGCGTAAACGAAATGGAGGCATAGAAACACTTAGAGCCATTCCATGGATATTTGCATGGACCCAGACTAGGTTTCATCTGCCGGTCTGGCTTGGCTTTGGGGCAGCATTTAAGTATGCACTTAACAAGGATAAAAAAAACCTCAATATGCTGCGGGACATGCACAAAAAATGGCCATTTTTTAGAGTTACTGCTGATTTGATTG</genome_strand>
        <mrna_strand>ACTTCTGGATGAAATTTCTGTTGTTGCTACAGAGAAGTATAGGTCAATAGTATTCAAGGAACCCCGATTTGTCGAGTACTTCCGCCTG....................................................................................................................GCAACACCCGAGCTGGAGTATGGTCGAATGAACATTGGTAGCCGTCCATCAAAGCGTAAACGAAATGGAGGCATAGAAACACTTAGAGCCATTCCATGGATATTTGCATGGACCCAGACTAGGTTTCATCTGCCGGTCTGGCTTGGCTTTGGGGCAGCATTTAAGTATGCACTTAACAAGGATAAAAAAAACCTCAATATGCTGCGGGACATGCACAAAAAATGGCCATTTTTTAGAGTTACTGCTGATTTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E392113" ref_strand="+" ref_description="SGN-E392113 [TUS-24-F22]">
      <seq>tgcaggcacacccgagctggagtatggtcgaatgaacattggtagccgtccatcaaagcgtaaacgaaatggaggcatagaaacacttagagccattccatggatatttgcatggacccagactaggtttcatctgccggtctggcttggctttggggcagcatttaagtatgcacttaacaaggataaaaaaaacctcaatatgctgcgggacatgcacaaaaaatggccattttttagagttactgctgatttgattgagatggtgtttgctaagggagaccccggcattgctgctttatacgacaagcttctggtttctgaagatttgtggtccttcggtgagcttttgaggtctgactatgaggagacaaagagcctcctgcttaaggtaaattacttttcaccaagttctcgcacttaacatacgtttttactcatcatgcttgatcgcatgatatccatgttatctagggggggtttgtataggttgctggacacaaggaacttctggagaacgatccctccttaaaacaacgactcaggctgcgtgattcctatatcactactttaaatgtctgccaagcttacacactaaagaggattcgtgatccaacctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="100559" stop="101781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100859" g_stop="101481" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E392113" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100859" e_stop="101481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGGCAACACCCGAGCTGGAGTATGGTCGAATGAACATTGGTAGCCGTCCATCAAAGCGTAAACGAAATGGAGGCATAGAAACACTTAGAGCCATTCCATGGATATTTGCATGGACCCAGACTAGGTTTCATCTGCCGGTCTGGCTTGGCTTTGGGGCAGCATTTAAGTATGCACTTAACAAGGATAAAAAAAACCTCAATATGCTGCGGGACATGCACAAAAAATGGCCATTTTTTAGAGTTACTGCTGATTTGATTGAGATGGTGTTTGCTAAGGGAGACCCCGGCATTGCTGCTTTATACGACAAGCTTCTGGTTTCTGAAGATTTGTGGTCCTTCGGTGAGCTTTTGAGGTCTGACTATGAGGAGACAAAGAGCCTCCTGCTTAAGGTAAATTACTTTTCACCAAGTTCTCGCACTTAACATACGTTTTTACTCATCATGCTTGATCGCATGATATCCATGTTATCTATGTTTCTTTTGTATAGGTTGCTGGACACAAGGAACTTCTGGAGAACGATCCCTCCTTAAAACAACGACTCAGGCTGCGTGATTCCTATATCACTACTTTAAATGTCTGCCAAGCTTACACACTAAAGAGGATTCGTGATCCAACCTACA</genome_strand>
        <mrna_strand>TGCAGGC-ACACCCGAGCTGGAGTATGGTCGAATGAACATTGGTAGCCGTCCATCAAAGCGTAAACGAAATGGAGGCATAGAAACACTTAGAGCCATTCCATGGATATTTGCATGGACCCAGACTAGGTTTCATCTGCCGGTCTGGCTTGGCTTTGGGGCAGCATTTAAGTATGCACTTAACAAGGATAAAAAAAACCTCAATATGCTGCGGGACATGCACAAAAAATGGCCATTTTTTAGAGTTACTGCTGATTTGATTGAGATGGTGTTTGCTAAGGGAGACCCCGGCATTGCTGCTTTATACGACAAGCTTCTGGTTTCTGAAGATTTGTGGTCCTTCGGTGAGCTTTTGAGGTCTGACTATGAGGAGACAAAGAGCCTCCTGCTTAAGGTAAATTACTTTTCACCAAGTTCTCGCACTTAACATACGTTTTTACTCATCATGCTTGATCGCATGATATCCATGTTATCTAGGGGGGGTTTGTATAGGTTGCTGGACACAAGGAACTTCTGGAGAACGATCCCTCCTTAAAACAACGACTCAGGCTGCGTGATTCCTATATCACTACTTTAAATGTCTGCCAAGCTTACACACTAAAGAGGATTCGTGATCCAACCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E370226" ref_strand="-" ref_description="SGN-E370226 [TUS-28-E8]">
      <seq>ttggggcagcatttaagtatgcacttaacaaggataaaaaaaacctcaatatgctgcgggacatgcacaaaaaatggccattttttagagttactgctgatttgattgagatggtgtttgctaagggagaccccggcattgctgctttatacgacaagcttctggtttctgaagatttgtggtccttcggtgagcttttgaggtctgactatgaggagacaaagagcctcctgcttaaggttgctggacacaaggaacttctggagaacgatccctccttaaaacaacgactcaggctgcgtgattcctatatcactactttaaatgtctgccaagcttacacactaaagaggattcgtgatccaacctacaaagtcactccaaggcctcacattaccaaggaatacatagaatcgaaacctgctgctgaactcgtgagcctgaacccacaaagcgaatatgctcccggcttggaagacacactcatcttgaccatgaaaggtattgctgctggaatgcagaatactggttaaatctattactatgtttttatgttttaatggttgataaagtgaacattaagaatcatgtatccttgagttcatcttttttttttttttgcaacttccataaaatggatgaataattattcccctctttgtttagtagcttcttgaataaaattatgatgtaaaagagtacttctcttcatttaccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="100712" stop="102129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101012" g_stop="101250" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101251" i_stop="101348" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101349" g_stop="101828" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="719" r_length="480" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E370226" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370226" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101012" e_stop="101250"/>
          <exon e_start="101349" e_stop="101828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGGCAGCATTTAAGTATGCACTTAACAAGGATAAAAAAAACCTCAATATGCTGCGGGACATGCACAAAAAATGGCCATTTTTTAGAGTTACTGCTGATTTGATTGAGATGGTGTTTGCTAAGGGAGACCCCGGCATTGCTGCTTTATACGACAAGCTTCTGGTTTCTGAAGATTTGTGGTCCTTCGGTGAGCTTTTGAGGTCTGACTATGAGGAGACAAAGAGCCTCCTGCTTAAGGTAAATTACTTTTCACCAAGTTCTCGCACTTAACATACGTTTTTACTCATCATGCTTGATCGCATGATATCCATGTTATCTATGTTTCTTTTGTATAGGTTGCTGGACACAAGGAACTTCTGGAGAACGATCCCTCCTTAAAACAACGACTCAGGCTGCGTGATTCCTATATCACTACTTTAAATGTCTGCCAAGCTTACACACTAAAGAGGATTCGTGATCCAACCTACAAAGTCACTCCAAGGCCTCACATTACCAAGGAATACATAGAATCGAAACCTGCTGCTGAACTCGTGAGCCTGAACCCACAAAGCGAATATGCTCCCGGCTTGGAAGACACACTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAATACTGGTTAAATCTATTACTATGTTTTTATGTTTTAATGGTTGATAAAGTGAACATTAAGAATCATGTATCCTTGAGTTCATCTTTTTTTTTTTTTTGCAACTTCCATAAAATGGATGAATAATTATTCCCCTCTTTGTTTAGTAGCTTCTTGAATAAAATTATGATGTAAAAGAGTACTTCTCTTCATTTACCAA</genome_strand>
        <mrna_strand>TTGGGGCAGCATTTAAGTATGCACTTAACAAGGATAAAAAAAACCTCAATATGCTGCGGGACATGCACAAAAAATGGCCATTTTTTAGAGTTACTGCTGATTTGATTGAGATGGTGTTTGCTAAGGGAGACCCCGGCATTGCTGCTTTATACGACAAGCTTCTGGTTTCTGAAGATTTGTGGTCCTTCGGTGAGCTTTTGAGGTCTGACTATGAGGAGACAAAGAGCCTCCTGCTTAAG..................................................................................................GTTGCTGGACACAAGGAACTTCTGGAGAACGATCCCTCCTTAAAACAACGACTCAGGCTGCGTGATTCCTATATCACTACTTTAAATGTCTGCCAAGCTTACACACTAAAGAGGATTCGTGATCCAACCTACAAAGTCACTCCAAGGCCTCACATTACCAAGGAATACATAGAATCGAAACCTGCTGCTGAACTCGTGAGCCTGAACCCACAAAGCGAATATGCTCCCGGCTTGGAAGACACACTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAATACTGGTTAAATCTATTACTATGTTTTTATGTTTTAATGGTTGATAAAGTGAACATTAAGAATCATGTATCCTTGAGTTCATCTTTTTTTTTTTTTTGCAACTTCCATAAAATGGATGAATAATTATTCCCCTCTTTGTTTAGTAGCTTCTTGAATAAAATTATGATGTAAAAGAGTACTTCTCTTCATTTACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E714563" ref_strand="+" ref_description="SGN-E714563 [FB11DB12]">
      <seq>cgctcttaacaaggataaaaaaaacctcaatatgctgcgggacatgcacaaaaaatggccattttttagagttactgctgatttgattgagatggtgtttgctaagggagaccccggcattgctgctttatacgacaagcttctggtttctgaagatttgtggtccttcggtgagcttttgaggtctgactatgaggagacaaagagcctcctgcttaaggttgctggacacaaggaacttctggagaacgatccctccttaaaacaacgactcaggctgcgtgattcctatatcactactttaaatgtctgccaagcttacacactaaagaggattcgtgatccaacctacaaagtcacaccaaggcctcacattaccaaggaatacatagaatcgaaacctgctgctgaactcgtgagcctgaacccacaaagcgaatatgctcccggcttggaagacacactcatcttgaccatgaaaggtattgctgctggaatgcagaatactggttaaatctattactatgtttttatgttttaatggttgataaagtgaacattaagaatcatgtatccttgagttcatctttttttttttttgcaacttccataaaagggatgaataattattcccctctttgtttagaacctccttgaataaaattatgatgtaaaagagtacttctcttcatttaccaaatgctttttgcaattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="100732" stop="102145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101031" g_stop="101250" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101251" i_stop="101348" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101349" g_stop="101844" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="715" r_length="495" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="716" polyA_stop="728"/>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E714563" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101031" e_stop="101250"/>
          <exon e_start="101349" e_stop="101844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACTTAACAAGGATAAAAAAAACCTCAATATGCTGCGGGACATGCACAAAAAATGGCCATTTTTTAGAGTTACTGCTGATTTGATTGAGATGGTGTTTGCTAAGGGAGACCCCGGCATTGCTGCTTTATACGACAAGCTTCTGGTTTCTGAAGATTTGTGGTCCTTCGGTGAGCTTTTGAGGTCTGACTATGAGGAGACAAAGAGCCTCCTGCTTAAGGTAAATTACTTTTCACCAAGTTCTCGCACTTAACATACGTTTTTACTCATCATGCTTGATCGCATGATATCCATGTTATCTATGTTTCTTTTGTATAGGTTGCTGGACACAAGGAACTTCTGGAGAACGATCCCTCCTTAAAACAACGACTCAGGCTGCGTGATTCCTATATCACTACTTTAAATGTCTGCCAAGCTTACACACTAAAGAGGATTCGTGATCCAACCTACAAAGTCACTCCAAGGCCTCACATTACCAAGGAATACATAGAATCGAAACCTGCTGCTGAACTCGTGAGCCTGAACCCACAAAGCGAATATGCTCCCGGCTTGGAAGACACACTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAATACTGGTTAAATCTATTACTATGTTTTTATGTTTTAATGGTTGATAAAGTGAACATTAAGAATCATGTATCCTTGAGTTCATCTTTTTTTTTTTTTTGCAACTTCCATAAAATGGATGAATAATTATTCCCCTCTTTGTTTAGTAGCTTCTTGAATAAAATTATGATGTAAAAGAGTACTTCTCTTCATTTACCAAATGCTTTTTGCAATTA</genome_strand>
        <mrna_strand>CGCTCTTAACAAGGATAAAAAAAACCTCAATATGCTGCGGGACATGCACAAAAAATGGCCATTTTTTAGAGTTACTGCTGATTTGATTGAGATGGTGTTTGCTAAGGGAGACCCCGGCATTGCTGCTTTATACGACAAGCTTCTGGTTTCTGAAGATTTGTGGTCCTTCGGTGAGCTTTTGAGGTCTGACTATGAGGAGACAAAGAGCCTCCTGCTTAAG..................................................................................................GTTGCTGGACACAAGGAACTTCTGGAGAACGATCCCTCCTTAAAACAACGACTCAGGCTGCGTGATTCCTATATCACTACTTTAAATGTCTGCCAAGCTTACACACTAAAGAGGATTCGTGATCCAACCTACAAAGTCACACCAAGGCCTCACATTACCAAGGAATACATAGAATCGAAACCTGCTGCTGAACTCGTGAGCCTGAACCCACAAAGCGAATATGCTCCCGGCTTGGAAGACACACTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAATACTGGTTAAATCTATTACTATGTTTTTATGTTTTAATGGTTGATAAAGTGAACATTAAGAATCATGTATCCTTGAGTTCATC-TTTTTTTTTTTTTGCAACTTCCATAAAAGGGATGAATAATTATTCCCCTCTTTGTTTAGAACCTCCTTGAATAAAATTATGATGTAAAAGAGTACTTCTCTTCATTTACCAAATGCTTTTTGCAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E247730" ref_strand="+" ref_description="SGN-E247730 [cLEF-42-O18]">
      <seq>aaggataaaaaaaacctcaatatgctgcgggacatgcacaaaaaatggccattttttagagttactgctgatttgattgagatggtgtttgctaagggagaccccggcattgctgctttatacgacaagcttctggtttctgaagatttgtggtccttcggtgagcttttgaggtctgactatgaggagacaaagagcctcctgcttaaggttgctggacacaaggaacttctggagaacgatccctccttaaaacaacgactcaggctgcgtgattcctatatcactactttaaatgtctgccaagcttacacactaaagaggattcgtgatccaacctacaaagtcactccaaggcctcacattaccaaggaatacatagaatcgaaacctgctgctgaactcgtgagcctgaacccacaaagcgaatatgctcccggcttggaagacacactcatcttgaccatgaaaggtattgctgctggaatgcagaatactggttaaatctattactatgtttttatgttttaatggttgataaagtgaacattaagaatcatgtatccttgagttcatcttttttttttttttgcaacttccataaaatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="100741" stop="102050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101041" g_stop="101250" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101251" i_stop="101348" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101349" g_stop="101750" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="612" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E247730" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101041" e_stop="101250"/>
          <exon e_start="101349" e_stop="101750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGATAAAAAAAACCTCAATATGCTGCGGGACATGCACAAAAAATGGCCATTTTTTAGAGTTACTGCTGATTTGATTGAGATGGTGTTTGCTAAGGGAGACCCCGGCATTGCTGCTTTATACGACAAGCTTCTGGTTTCTGAAGATTTGTGGTCCTTCGGTGAGCTTTTGAGGTCTGACTATGAGGAGACAAAGAGCCTCCTGCTTAAGGTAAATTACTTTTCACCAAGTTCTCGCACTTAACATACGTTTTTACTCATCATGCTTGATCGCATGATATCCATGTTATCTATGTTTCTTTTGTATAGGTTGCTGGACACAAGGAACTTCTGGAGAACGATCCCTCCTTAAAACAACGACTCAGGCTGCGTGATTCCTATATCACTACTTTAAATGTCTGCCAAGCTTACACACTAAAGAGGATTCGTGATCCAACCTACAAAGTCACTCCAAGGCCTCACATTACCAAGGAATACATAGAATCGAAACCTGCTGCTGAACTCGTGAGCCTGAACCCACAAAGCGAATATGCTCCCGGCTTGGAAGACACACTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAATACTGGTTAAATCTATTACTATGTTTTTATGTTTTAATGGTTGATAAAGTGAACATTAAGAATCATGTATCCTTGAGTTCATCTTTTTTTTTTTTTTGCAACTTCCATAAAATGGATG</genome_strand>
        <mrna_strand>AAGGATAAAAAAAACCTCAATATGCTGCGGGACATGCACAAAAAATGGCCATTTTTTAGAGTTACTGCTGATTTGATTGAGATGGTGTTTGCTAAGGGAGACCCCGGCATTGCTGCTTTATACGACAAGCTTCTGGTTTCTGAAGATTTGTGGTCCTTCGGTGAGCTTTTGAGGTCTGACTATGAGGAGACAAAGAGCCTCCTGCTTAAG..................................................................................................GTTGCTGGACACAAGGAACTTCTGGAGAACGATCCCTCCTTAAAACAACGACTCAGGCTGCGTGATTCCTATATCACTACTTTAAATGTCTGCCAAGCTTACACACTAAAGAGGATTCGTGATCCAACCTACAAAGTCACTCCAAGGCCTCACATTACCAAGGAATACATAGAATCGAAACCTGCTGCTGAACTCGTGAGCCTGAACCCACAAAGCGAATATGCTCCCGGCTTGGAAGACACACTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAATACTGGTTAAATCTATTACTATGTTTTTATGTTTTAATGGTTGATAAAGTGAACATTAAGAATCATGTATCCTTGAGTTCATCTTTTTTTTTTTTTTGCAACTTCCATAAAATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E744435" ref_strand="-" ref_description="SGN-E744435 [GI|399636]">
      <seq>gagatggtgtttgctaagggagaccccggcattgctgctttatacgacaagcttctggtttctgaagatttgtggtccttcggtgagcttttgaggtctgactatgaggagacaaagagcctcctgcttaaggttgctggacacaaggaacttctggagaacgatccctccttaaaacaacgattcaggctgcgtgattcctatatcactactttaatgtctgccaagcttacacataaagaggattcgtgatccaactacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="100819" stop="101782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101119" g_stop="101250" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101251" i_stop="101348" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101349" g_stop="101482" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="263" r_length="131" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E744435" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744435" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101119" e_stop="101250"/>
          <exon e_start="101349" e_stop="101482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATGGTGTTTGCTAAGGGAGACCCCGGCATTGCTGCTTTATACGACAAGCTTCTGGTTTCTGAAGATTTGTGGTCCTTCGGTGAGCTTTTGAGGTCTGACTATGAGGAGACAAAGAGCCTCCTGCTTAAGGTAAATTACTTTTCACCAAGTTCTCGCACTTAACATACGTTTTTACTCATCATGCTTGATCGCATGATATCCATGTTATCTATGTTTCTTTTGTATAGGTTGCTGGACACAAGGAACTTCTGGAGAACGATCCCTCCTTAAAACAACGACTCAGGCTGCGTGATTCCTATATCACTACTTTAAATGTCTGCCAAGCTTACACACTAAAGAGGATTCGTGATCCAACCTACAA</genome_strand>
        <mrna_strand>GAGATGGTGTTTGCTAAGGGAGACCCCGGCATTGCTGCTTTATACGACAAGCTTCTGGTTTCTGAAGATTTGTGGTCCTTCGGTGAGCTTTTGAGGTCTGACTATGAGGAGACAAAGAGCCTCCTGCTTAAG..................................................................................................GTTGCTGGACACAAGGAACTTCTGGAGAACGATCCCTCCTTAAAACAACGATTCAGGCTGCGTGATTCCTATATCACTACTTT-AATGTCTGCCAAGCTTACACA-TAAAGAGGATTCGTGATCCAA-CTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E711980" ref_strand="+" ref_description="SGN-E711980 [FB03CC02]">
      <seq>ccggtagaccccggcattgctgctttatacgacaagcttctggtttctgaagatttgtggtccttcggtgagcttttgaggtctgactatgaggagacaaagagcctcctgcttaaggttgctggacacaaggaacttctggagaacgatccctccttaaaacaacgactcaggctgcgtgattcctatatcactactttaaatgtctgccaagcttacacactaaagaggattcgtgatccaacctacaaagtcacaccaaggcctcacattaccaaggaatacatagaatcgaaacctgctgctgaactcgtgagcctgaacccacaaagcgaatatgctcccggcttggaagacacactcatcttgaccatgaaaggtattgctgctggaatgcagaatactggttaaatctattactatgtttttatgttttaatggttgataaagtgaacattaagaatcatgtatccttgagttcatctttttttttttttgcaacttccataaaatggatgaataattattcccctctttgtttagtaccttcttgaataaaattatgatgtaaaaaagtacttctcttcttttaccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="100836" stop="102129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101134" g_stop="101250" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101251" i_stop="101348" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101349" g_stop="101828" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="596" r_length="479" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E711980" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101134" e_stop="101250"/>
          <exon e_start="101349" e_stop="101828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGAGACCCCGGCATTGCTGCTTTATACGACAAGCTTCTGGTTTCTGAAGATTTGTGGTCCTTCGGTGAGCTTTTGAGGTCTGACTATGAGGAGACAAAGAGCCTCCTGCTTAAGGTAAATTACTTTTCACCAAGTTCTCGCACTTAACATACGTTTTTACTCATCATGCTTGATCGCATGATATCCATGTTATCTATGTTTCTTTTGTATAGGTTGCTGGACACAAGGAACTTCTGGAGAACGATCCCTCCTTAAAACAACGACTCAGGCTGCGTGATTCCTATATCACTACTTTAAATGTCTGCCAAGCTTACACACTAAAGAGGATTCGTGATCCAACCTACAAAGTCACTCCAAGGCCTCACATTACCAAGGAATACATAGAATCGAAACCTGCTGCTGAACTCGTGAGCCTGAACCCACAAAGCGAATATGCTCCCGGCTTGGAAGACACACTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAATACTGGTTAAATCTATTACTATGTTTTTATGTTTTAATGGTTGATAAAGTGAACATTAAGAATCATGTATCCTTGAGTTCATCTTTTTTTTTTTTTTGCAACTTCCATAAAATGGATGAATAATTATTCCCCTCTTTGTTTAGTAGCTTCTTGAATAAAATTATGATGTAAAAGAGTACTTCTCTTCATTTACCAA</genome_strand>
        <mrna_strand>CCGGTAGACCCCGGCATTGCTGCTTTATACGACAAGCTTCTGGTTTCTGAAGATTTGTGGTCCTTCGGTGAGCTTTTGAGGTCTGACTATGAGGAGACAAAGAGCCTCCTGCTTAAG..................................................................................................GTTGCTGGACACAAGGAACTTCTGGAGAACGATCCCTCCTTAAAACAACGACTCAGGCTGCGTGATTCCTATATCACTACTTTAAATGTCTGCCAAGCTTACACACTAAAGAGGATTCGTGATCCAACCTACAAAGTCACACCAAGGCCTCACATTACCAAGGAATACATAGAATCGAAACCTGCTGCTGAACTCGTGAGCCTGAACCCACAAAGCGAATATGCTCCCGGCTTGGAAGACACACTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAATACTGGTTAAATCTATTACTATGTTTTTATGTTTTAATGGTTGATAAAGTGAACATTAAGAATCATGTATCCTTGAGTTCATC-TTTTTTTTTTTTTGCAACTTCCATAAAATGGATGAATAATTATTCCCCTCTTTGTTTAGTACCTTCTTGAATAAAATTATGATGTAAAAAAGTACTTCTCTTCTTTTACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E552949" ref_strand="+" ref_description="SGN-E552949 [cTSB-5-I5]">
      <seq>aaagagcctcctgcttaaggttgctggacacaaggaacttctggagaacgatccctccttaaaacaacgactcaggctgcgtgattcctatatcactactttaaatgtctgccaagcttacacactaaagaggattcgtgatccaacctacaaagtcactccaaggcctcacattaccaaggaatacatagaatcgaaacctgctgctgaactcgtgagcctgaacccacaaagcgaatatgctcccggcttggaagacacactcatcttgaccatgaaaggtattgctgctggaatgcagaatactggttaaatctattactatgtttttatgttttaatggttgataaagtgaacattaagaatcatgtatccttgagttcatcttttttttttttttgcaacttccataaaagggatgaataattattcccctctttgtttagtagcttcttgaataaaattatgatgtaaaagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="100932" stop="102107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101232" g_stop="101250" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101251" i_stop="101348" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101349" g_stop="101807" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="478" r_length="459" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="479" polyA_stop="508"/>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E552949" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101232" e_stop="101250"/>
          <exon e_start="101349" e_stop="101807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGCCTCCTGCTTAAGGTAAATTACTTTTCACCAAGTTCTCGCACTTAACATACGTTTTTACTCATCATGCTTGATCGCATGATATCCATGTTATCTATGTTTCTTTTGTATAGGTTGCTGGACACAAGGAACTTCTGGAGAACGATCCCTCCTTAAAACAACGACTCAGGCTGCGTGATTCCTATATCACTACTTTAAATGTCTGCCAAGCTTACACACTAAAGAGGATTCGTGATCCAACCTACAAAGTCACTCCAAGGCCTCACATTACCAAGGAATACATAGAATCGAAACCTGCTGCTGAACTCGTGAGCCTGAACCCACAAAGCGAATATGCTCCCGGCTTGGAAGACACACTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAATACTGGTTAAATCTATTACTATGTTTTTATGTTTTAATGGTTGATAAAGTGAACATTAAGAATCATGTATCCTTGAGTTCATCTTTTTTTTTTTTTTGCAACTTCCATAAAATGGATGAATAATTATTCCCCTCTTTGTTTAGTAGCTTCTTGAATAAAATTATGATGTAAAAGA</genome_strand>
        <mrna_strand>AAAGAGCCTCCTGCTTAAG..................................................................................................GTTGCTGGACACAAGGAACTTCTGGAGAACGATCCCTCCTTAAAACAACGACTCAGGCTGCGTGATTCCTATATCACTACTTTAAATGTCTGCCAAGCTTACACACTAAAGAGGATTCGTGATCCAACCTACAAAGTCACTCCAAGGCCTCACATTACCAAGGAATACATAGAATCGAAACCTGCTGCTGAACTCGTGAGCCTGAACCCACAAAGCGAATATGCTCCCGGCTTGGAAGACACACTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAATACTGGTTAAATCTATTACTATGTTTTTATGTTTTAATGGTTGATAAAGTGAACATTAAGAATCATGTATCCTTGAGTTCATCTTTTTTTTTTTTTTGCAACTTCCATAAAAGGGATGAATAATTATTCCCCTCTTTGTTTAGTAGCTTCTTGAATAAAATTATGATGTAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E247719" ref_strand="-" ref_description="SGN-E247719 [cLEF-42-I18]">
      <seq>aggtaaattacttttcaccaagttctcgcacttaacatacgtttttactcatcatgcttgatcgcatgatatccatgttatctatgtttcttttgtataggttgctggacacaaggaacttctggagaacgatccctccttaaaacaacgactcaggctgcgtgattcctatatcactactttaaatgtctgccaagcttacacactaaagaggattcgtgatccaacctacaaagtcactccaaggcctcacattaccaaggaatacatagaatcgaaacctgctgctgaactcgtgagcctgaacccacaaagcgaatatgctcccggcttggaagacacactcatcttgaccatgaaaggtattgctgctggaatgcagaatactggttaaatctattactatgtttttatgttttaatggttgataaagtgaacattaagaatcatgtatccttgagttcatcttttttttttttttgcaacttccataaaatggatgaataattattcccctctttgtttagtagcttcttgaataaaattatgatgtaaaagagtacttctcttcatttaccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="100949" stop="102129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101249" g_stop="101828" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="581" polyA_stop="595"/>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E247719" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247719" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101249" e_stop="101828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTAAATTACTTTTCACCAAGTTCTCGCACTTAACATACGTTTTTACTCATCATGCTTGATCGCATGATATCCATGTTATCTATGTTTCTTTTGTATAGGTTGCTGGACACAAGGAACTTCTGGAGAACGATCCCTCCTTAAAACAACGACTCAGGCTGCGTGATTCCTATATCACTACTTTAAATGTCTGCCAAGCTTACACACTAAAGAGGATTCGTGATCCAACCTACAAAGTCACTCCAAGGCCTCACATTACCAAGGAATACATAGAATCGAAACCTGCTGCTGAACTCGTGAGCCTGAACCCACAAAGCGAATATGCTCCCGGCTTGGAAGACACACTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAATACTGGTTAAATCTATTACTATGTTTTTATGTTTTAATGGTTGATAAAGTGAACATTAAGAATCATGTATCCTTGAGTTCATCTTTTTTTTTTTTTTGCAACTTCCATAAAATGGATGAATAATTATTCCCCTCTTTGTTTAGTAGCTTCTTGAATAAAATTATGATGTAAAAGAGTACTTCTCTTCATTTACCAA</genome_strand>
        <mrna_strand>AGGTAAATTACTTTTCACCAAGTTCTCGCACTTAACATACGTTTTTACTCATCATGCTTGATCGCATGATATCCATGTTATCTATGTTTCTTTTGTATAGGTTGCTGGACACAAGGAACTTCTGGAGAACGATCCCTCCTTAAAACAACGACTCAGGCTGCGTGATTCCTATATCACTACTTTAAATGTCTGCCAAGCTTACACACTAAAGAGGATTCGTGATCCAACCTACAAAGTCACTCCAAGGCCTCACATTACCAAGGAATACATAGAATCGAAACCTGCTGCTGAACTCGTGAGCCTGAACCCACAAAGCGAATATGCTCCCGGCTTGGAAGACACACTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAATACTGGTTAAATCTATTACTATGTTTTTATGTTTTAATGGTTGATAAAGTGAACATTAAGAATCATGTATCCTTGAGTTCATCTTTTTTTTTTTTTTGCAACTTCCATAAAATGGATGAATAATTATTCCCCTCTTTGTTTAGTAGCTTCTTGAATAAAATTATGATGTAAAAGAGTACTTCTCTTCATTTACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E577693" ref_strand="+" ref_description="SGN-E577693 [LE15BH07]">
      <seq>caaggcctcacattaccaaggaatacatagaatcgaaacctgctgctgaactcgtgagcctgaacccacaaagcgaatatgctcccggcttggaagacacactcatcttgaccatgaaaggtattgctgctggaatgcagaatactggttaaatctattactatgtttttatgttttaatggttgataaagtgaacattaagaatcatgtatccttgagttcatctttttttttttttgcaacttccataaaatggatgaataattattcccctctttgtttagtagcttcttgaataaaattatgatgtaaaagagtacttctcttcatttaccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="101191" stop="102129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101491" g_stop="101828" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E577693" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101491" e_stop="101828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGCCTCACATTACCAAGGAATACATAGAATCGAAACCTGCTGCTGAACTCGTGAGCCTGAACCCACAAAGCGAATATGCTCCCGGCTTGGAAGACACACTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAATACTGGTTAAATCTATTACTATGTTTTTATGTTTTAATGGTTGATAAAGTGAACATTAAGAATCATGTATCCTTGAGTTCATCTTTTTTTTTTTTTTGCAACTTCCATAAAATGGATGAATAATTATTCCCCTCTTTGTTTAGTAGCTTCTTGAATAAAATTATGATGTAAAAGAGTACTTCTCTTCATTTACCAA</genome_strand>
        <mrna_strand>CAAGGCCTCACATTACCAAGGAATACATAGAATCGAAACCTGCTGCTGAACTCGTGAGCCTGAACCCACAAAGCGAATATGCTCCCGGCTTGGAAGACACACTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAATACTGGTTAAATCTATTACTATGTTTTTATGTTTTAATGGTTGATAAAGTGAACATTAAGAATCATGTATCCTTGAGTTCATC-TTTTTTTTTTTTTGCAACTTCCATAAAATGGATGAATAATTATTCCCCTCTTTGTTTAGTAGCTTCTTGAATAAAATTATGATGTAAAAGAGTACTTCTCTTCATTTACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E397834" ref_strand="-" ref_description="SGN-E397834 [TUS-24-F22]">
      <seq>acactcattttgaccctgaaaggtattgttgccggaatgcagaatactggttaaatctattactatgtttttacgttttaatggtcgataaagtgaacatcaagaatcatgtatccttgagttcatcttttttttttttttgcaacttccataaaatggatgaataattattcccctctttgtttagtagcttcttgaataaaattatgatgtaaaagagtacttctcttcatttaccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="101289" stop="102129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101589" g_stop="101828" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="241" polyA_stop="256"/>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E397834" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>240</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397834" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101589" e_stop="101828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAATACTGGTTAAATCTATTACTATGTTTTTATGTTTTAATGGTTGATAAAGTGAACATTAAGAATCATGTATCCTTGAGTTCATCTTTTTTTTTTTTTTGCAACTTCCATAAAATGGATGAATAATTATTCCCCTCTTTGTTTAGTAGCTTCTTGAATAAAATTATGATGTAAAAGAGTACTTCTCTTCATTTACCAA</genome_strand>
        <mrna_strand>ACACTCATTTTGACCCTGAAAGGTATTGTTGCCGGAATGCAGAATACTGGTTAAATCTATTACTATGTTTTTACGTTTTAATGGTCGATAAAGTGAACATCAAGAATCATGTATCCTTGAGTTCATCTTTTTTTTTTTTTTGCAACTTCCATAAAATGGATGAATAATTATTCCCCTCTTTGTTTAGTAGCTTCTTGAATAAAATTATGATGTAAAAGAGTACTTCTCTTCATTTACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E575676" ref_strand="+" ref_description="SGN-E575676 [35338]">
      <seq>gatttctatacccaatatatccacttatctgtgttgctgcttctgctgtgattgaaagctttcctgatctgttcagggataagtacaatcccaatggttcatccactctagttaagatagcgaaaattctcagacctctagctcttggtttgattctttgtgtctcccacgctcggacattttcacttattaatggttattcagctcctattgagatttacaagcatttggactaccatgatgatgctggaccaggttctgtcctttgcgttggtagtgagtggcaccggttcccttcttccttcttcattcctgattatgtgggccaagttcgatggttggatgatggattcacaggccttctcccaattccgttcaattctagcttgggtggtacctcggcagcaccatcttacttcaataataagaacaaggcatcagagaggcaatatcttaaggatcctgagcaatgcactttgctgatagagctgcaacttcaacgtccttatcctacgcgagggagtgacatgaccacatgggagattgtttgcagcacttccatagtctggacaggcaacttatctcctccattgtatcggtcattctttattccaaatccaatgggcagcagaagaatgtctttgggccaattaccgaattactttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="105229" stop="107514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105529" g_stop="105644" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105645" i_stop="105722" i_length="78">
            <donor d_prob="0.918" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105723" g_stop="105861" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="255" r_length="139" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105862" i_stop="106620" i_length="759">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106621" g_stop="106817" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="452" r_length="197" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106818" i_stop="106929" i_length="112">
            <donor d_prob="0.894" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106930" g_stop="107019" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="542" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107020" i_stop="107101" i_length="82">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.965" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107102" g_stop="107198" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="644" r_length="102" r_score="0.845"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E575676" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105529" e_stop="105644"/>
          <exon e_start="105723" e_stop="105861"/>
          <exon e_start="106621" e_stop="106817"/>
          <exon e_start="106930" e_stop="107019"/>
          <exon e_start="107102" e_stop="107198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTCTGTACCCAATATATCCACTTATCTGTGTTGCTGCTTCTGCTGTGATTGAGAGCTTTCCTGATCTGTTCAGGGATAAGTACAATCCCAACGGTACATCCACTCTAGTTAAGGTAGTTCCCTATGTCCAAAGAGAACTTGCCAAGCTTCAATAATAGTGCCTATAGTTTTCACTTGCTTTGCTTTTGCAGATAGCGAAAATTCTCAGACCTCTAGCTCTTGGTTTGATTCTTTGTGTCTCCCATGCTCGGACATTTTCACTTATTAATGGTTATTCAGCTCCTATTGAGATATACAAGCATTTGGACTACCATGATGACGCTGGACCAGGTGAGGATTAGCCTGTTTAATGGCAAGTTGATTATATGCTTGTTAAATGTTCATCTTCAGTACTTTTAGCTTTGATGAATGGTGTATCAATCTTGATGCATGAATTAGTCTTTCTTCATAGGATGACATTCATTGTATGATCTCGGCATTAAGATACTTGTCGGATTAAAAGGACCATATAATTTTTTATTGGAACTTTAGTTTTGTTGTAAAGAGTAATTTTATCCAGTAACTTTTGCCAATACTGGATAACCGAGAAGGTGAAACGATTTCTCTTGTAAATCTGATTTTTTGGAGCCGAAGATGTGATTTTATTGCATAGGGTTGAAACTTGAAAGTGAAAATACCTGATTTAATTATTTGAACCTAGATAGACATGGGAATAAATAGGTGTCAGGTCGAGATATGAGACGTTGATTTGCTGTTACCATGTGGTTCTCCATTTATCTGGTCTTTAGATTAACGCCCTATAGTATGAGCATTTGTTGTTTTGGTTCCATTATCACAAAAAAAATATGAGCATTTGTCAAATGTGAGCAAAAAGTTTCCTCGGGACATCCGTATGTGATTTTCCCCCCATTTTACAGCTACTGCTATGTTTCTTGCTTCTCCATTTATTCTGTTCTTGCTAGATGGGTGCATTTCTGGTGCTTTGTTTAGCATATGAAGCTGGATGTAACATCATCTTTTCATGTTCTGAAAGTTGCATGCAGTATCCATTTCCCCATGTATATTTTGAACTTCCCCATGTTGGTTCAGGTTCTGTCCTTTGCGTTGGTAGTGAGTGGCACCGGTTCCCTTCTTCCTTCTTCATTCCTGATTATGTGAGCCAAGTTCGATGGCTGGATGATGGATTCACAGGCCTTCTCCCAATCCCGTTCAATTCTAGCTTGGGTGGGACCTCGGCGGCACCATCTTACTTCAATAATAAGAACAAGGCATCAGAGAGGCAATATGTAAGCAGACTCTCCTGTAATGTTTAACCAGAAAGAGTCTCATTTTTTTTTAAGTGCGCAATGTATTCAACTATGAGATGACACTCAGCTTCTTTTGCTAATAATGTTATAGCTTAAGGATCCTGAGCAATGCACATTGCTGATAGAGCTGCAACTTCAACGTCCTTATCCTACGCGAGGGAGTGACATGTCTACATGGGAGGTACATGGCTCATGATCATAAGCTCATCCCTCTCTCCCTCCCTCTGCTTCATGTTATTAACTTGTAAGAGTTTTGCGTACAGATTG-TTGCAGCACTTCCATA-CCTGGACAGGGAAC-TATCACCTCCATTGCATCGATCATTCTTTATTCCAAAT-CAAT-GGCAGCAGAAGAATGTCTTTG</genome_strand>
        <mrna_strand>GATTTCTATACCCAATATATCCACTTATCTGTGTTGCTGCTTCTGCTGTGATTGAAAGCTTTCCTGATCTGTTCAGGGATAAGTACAATCCCAATGGTTCATCCACTCTAGTTAAG..............................................................................ATAGCGAAAATTCTCAGACCTCTAGCTCTTGGTTTGATTCTTTGTGTCTCCCACGCTCGGACATTTTCACTTATTAATGGTTATTCAGCTCCTATTGAGATTTACAAGCATTTGGACTACCATGATGATGCTGGACCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGTCCTTTGCGTTGGTAGTGAGTGGCACCGGTTCCCTTCTTCCTTCTTCATTCCTGATTATGTGGGCCAAGTTCGATGGTTGGATGATGGATTCACAGGCCTTCTCCCAATTCCGTTCAATTCTAGCTTGGGTGGTACCTCGGCAGCACCATCTTACTTCAATAATAAGAACAAGGCATCAGAGAGGCAATAT................................................................................................................CTTAAGGATCCTGAGCAATGCACTTTGCTGATAGAGCTGCAACTTCAACGTCCTTATCCTACGCGAGGGAGTGACATGACCACATGGGAG..................................................................................ATTGTTTGCAGCACTTCCATAGTCTGGACAGGCAACTTATCTCCTCCATTGTATCGGTCATTCTTTATTCCAAATCCAATGGGCAGCAGAAGAATGTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E619796" ref_strand="+" ref_description="SGN-E619796 [70490]">
      <seq>tagctgatagagctgcaacttcaacgtccttatcctacgcgagggagtgacatgaccacatgggagattgttgcagcacttccatatctggacagggaactatctcctccattgtatcggtcattctttattccaaatcaatggcagcagaagaatgtctttggccaatacagattacttaggagaatacaaaagtgattgcagatgtacacgctgaattttctgttgtccagcaacttttaactctcccgggtatagaagtacgctaatgttgactagtttagtttttgtagtctgatactgcctacactttcgaggatagcaaattgaattaagttattggatcttccattaattttggaagtcagattttgtactatttttttgttggtgtagattacacagatggatgttttaattttgattgggaagcaaatagtcgaaatctcttattgacatcgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="106654" stop="107801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106954" g_stop="107019" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107020" i_stop="107101" i_length="82">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.965" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107102" g_stop="107504" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="465" r_length="399" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E619796" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E619796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106954" e_stop="107019"/>
          <exon e_start="107102" e_stop="107504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTGATAGAGCTGCAACTTCAACGTCCTTATCCTACGCGAGGGAGTGACATGTCTACATGGGAGGTACATGGCTCATGATCATAAGCTCATCCCTCTCTCCCTCCCTCTGCTTCATGTTATTAACTTGTAAGAGTTTTGCGTACAGATTGTTGCAGCACTTCCATACCTGGACAGGGAACTATCACCTCCATTGCATCGATCATTCTTTATTCCAAATCAATGGCAGCAGAAGAATGTCTTTGGCCAGTACAGATTACTCAGGAGAATACAAAAGTGATCGCAGATGTACACGCTGAATTTTCTGTTGTCCAGCAGCTTTTAACTCTCTC-GGTATAGTACTACGCTAATGTCGACTAGTTTAGTTTTTGTAGTCTGAAACTGCCTACACTTTCGAGGGTAGCAAGTTGAATTAAGTTAAGTTATTGGATCTTCCATTAATTTTGGAAGTCAGATTTTGCATTACATTTTTGTTGGTGTAGATTACACAGATGGGTGTTTAAATTTTGATTAGGAAGCAAATAGTCGAAGTCTCTTATTGGCATTGTTGA</genome_strand>
        <mrna_strand>TAGCTGATAGAGCTGCAACTTCAACGTCCTTATCCTACGCGAGGGAGTGACATGACCACATGGGAG..................................................................................ATTGTTGCAGCACTTCCATATCTGGACAGGGAACTATCTCCTCCATTGTATCGGTCATTCTTTATTCCAAATCAATGGCAGCAGAAGAATGTCTTTGGCCAATACAGATTACTTAGGAGAATACAAAAGTGATTGCAGATGTACACGCTGAATTTTCTGTTGTCCAGCAACTTTTAACTCTCCCGGGTATAGAAGTACGCTAATGTTGACTAGTTTAGTTTTTGTAGTCTGATACTGCCTACACTTTCGAGGATAGCAAATTG----AA-TTAAGTTATTGGATCTTCCATTAATTTTGGAAGTCAGATTTTGTACTATTTTTTTGTTGGTGTAGATTACACAGATGGATGTTTTAATTTTGATTGGGAAGCAAATAGTCGAAATCTCTTATTGACATCGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E354106" ref_strand="+" ref_description="SGN-E354106 [cTOS-16-J23]">
      <seq>cattgcatcgatcattctttattccaaatcaatggcagcagaagaatgtctttggccagtacagattactcaggagaatacaaaagtgatcgcagatgtacacgctgaattttctgttgtccagcagcttttaactctctcggtatagtactacgctaatgtcgactagtttagtttttgtagtctgaaactgcctacactttcgagggtagcaagttgaattaagttaagttattggatcttccattaattttggaagtcagattttgcattacatttttgttggtgtagattacacagatgggtgtttaaattttgattaggaagcaaatagtcgaagtctcttattggcattgttgaaaatgtatcagtttaatttggttccagttactatatatgctcaaagttgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="106845" stop="107859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107145" g_stop="107565" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E354106" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107145" e_stop="107565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGCATCGATCATTCTTTATTCCAAATCAATGGCAGCAGAAGAATGTCTTTGGCCAGTACAGATTACTCAGGAGAATACAAAAGTGATCGCAGATGTACACGCTGAATTTTCTGTTGTCCAGCAGCTTTTAACTCTCTCGGTATAGTACTACGCTAATGTCGACTAGTTTAGTTTTTGTAGTCTGAAACTGCCTACACTTTCGAGGGTAGCAAGTTGAATTAAGTTAAGTTATTGGATCTTCCATTAATTTTGGAAGTCAGATTTTGCATTACATTTTTGTTGGTGTAGATTACACAGATGGGTGTTTAAATTTTGATTAGGAAGCAAATAGTCGAAGTCTCTTATTGGCATTGTTGAAAATGTATCAGTTTAATTTGGTTCCAGTTACTATATATGCTCAAAGTTGTAAAAAGTTAAG</genome_strand>
        <mrna_strand>CATTGCATCGATCATTCTTTATTCCAAATCAATGGCAGCAGAAGAATGTCTTTGGCCAGTACAGATTACTCAGGAGAATACAAAAGTGATCGCAGATGTACACGCTGAATTTTCTGTTGTCCAGCAGCTTTTAACTCTCTCGGTATAGTACTACGCTAATGTCGACTAGTTTAGTTTTTGTAGTCTGAAACTGCCTACACTTTCGAGGGTAGCAAGTTGAATTAAGTTAAGTTATTGGATCTTCCATTAATTTTGGAAGTCAGATTTTGCATTACATTTTTGTTGGTGTAGATTACACAGATGGGTGTTTAAATTTTGATTAGGAAGCAAATAGTCGAAGTCTCTTATTGGCATTGTTGAAAATGTATCAGTTTAATTTGGTTCCAGTTACTATATATGCTCAAAGTTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E624010" ref_strand="+" ref_description="SGN-E624010 [89156]">
      <seq>aggagaatacaaaagtgattgcagatgtacacgctgaattttctgttgtccagcaacttttaactctcccgggtatagaagtacgctaatgttgactagtttagtttttgtagtttgatactgcctacactttcgaggatagcaagttgaattaagcaagttattggatcttccattaattttggaagtcagattttgtactgtttttttgttggtgtagattacacagatggatgtttaaattttgattgggaagcaaatagtcgaaatctcttattggcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="106916" stop="107797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107216" g_stop="107508" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E624010" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107216" e_stop="107508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGAATACAAAAGTGATCGCAGATGTACACGCTGAATTTTCTGTTGTCCAGCAGCTTTTAACTCTCTC-GGTATAGTACTACGCTAATGTCGACTAGTTTAGTTTTTGTAGTCTGAAACTGCCTACACTTTCGAGGGTAGCAAGTTGAATTAAGTTAAGTTATTGGATCTTCCATTAATTTTGGAAGTCAGATTTTGCATTACATTTTTGTTGGTGTAGATTACACAGATGGGTGTTTAAATTTTGATTAGGAAGCAAATAGTCGAAGTCTCTTATTGGCATTGTTGAAAAT</genome_strand>
        <mrna_strand>AGGAGAATACAAAAGTGATTGCAGATGTACACGCTGAATTTTCTGTTGTCCAGCAACTTTTAACTCTCCCGGGTATAGAAGTACGCTAATGTTGACTAGTTTAGTTTTTGTAGTTTGATACTGCCTACACTTTCGAGGATAGCAAGTTGAATTAAG-CAAGTTATTGGATCTTCCATTAATTTTGGAAGTCAGATTTTGTACTGTTTTTTTGTTGGTGTAGATTACACAGATGGATGTTTAAATTTTGATTGGGAAGCAAATAGTCGAAATCTCTTATTGGCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E269882" ref_strand="-" ref_description="SGN-E269882 [cLEM-17-P7]">
      <seq>gttctcaggtcaacgcaaatgatttgcgtggggaaatgtcattggttttggctggtctggctgctgaaggaaatactgacatcagtggcatctcccatgttgataggggttatgaaaatttggaaatgaaacttcaaggtctcggtgccaacgtcataaggacgacaacaacaacattccccgtgtaatccccccaggtgaggtttggaaaagaatgtgtataacttccgggtttactcgtgtaggacttataagtaaagatcgaagagcaagcttgaagaatagctggggatgttgaaactgtgagattattcattgcatttcgcaatagccaaattttgcagctttagacaaggctcatttgtcgatttctataatcagatttattgtctctaaacatagtaattcataagtgctttgctttgcccaaaagtctttcggaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="108452" stop="107406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108152" g_stop="107709" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="445" polyA_stop="466"/>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E269882" ref_strand="-">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269882" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="108152" e_stop="107709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTCAGGTCAACGCAACTGATTTGCGTGGGGGAATGTCATTGGTTTTGGCTGGTCTGGCTGCTGAAGGAATTACTGAAATCAGTGGAATCTCCCATGTTGATAGGGGTTATGAAAATTTGGAAATGAAACTTCAAGGTCTCGGTGCCAACGTCATAAGGACGACAACAACAACATTCCCCGTGTAATCCCACCAGGTGAGGTCTGGAAAAGAATGTGTATAACTTCCGGGTTTACTCGTGTAGGACTTATAAGTAAAGATCGAAGAGCAAGCTTGAAGAATAGCTGGGGATGTTGAAACTGTGAGATTATTCATTGCATTTCGCAATAGCCAAATTTTGCAGCTTTAGACAAGGCTCATTTGTCGATTTCTATAATCAGCTTAATTGTCACTAAACATAGTAATTCATAACTACTTTGATTTGCCCAAGAGTCTTTCGGAAA</genome_strand>
        <mrna_strand>GTTCTCAGGTCAACGCAAATGATTTGCGTGGGGAAATGTCATTGGTTTTGGCTGGTCTGGCTGCTGAAGGAAATACTGACATCAGTGGCATCTCCCATGTTGATAGGGGTTATGAAAATTTGGAAATGAAACTTCAAGGTCTCGGTGCCAACGTCATAAGGACGACAACAACAACATTCCCCGTGTAATCCCCCCAGGTGAGGTTTGGAAAAGAATGTGTATAACTTCCGGGTTTACTCGTGTAGGACTTATAAGTAAAGATCGAAGAGCAAGCTTGAAGAATAGCTGGGGATGTTGAAACTGTGAGATTATTCATTGCATTTCGCAATAGCCAAATTTTGCAGCTTTAGACAAGGCTCATTTGTCGATTTCTATAATCAGATTTATTGTCTCTAAACATAGTAATTCATAAGTGCTTTGCTTTGCCCAAAAGTCTTTCGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E346337" ref_strand="+" ref_description="SGN-E346337 [cTOF-23-P2]">
      <seq>acagatctccagccactgacaatggcgttgctatcaacgtgcaagggtgtcagcgtcattgaggaatctgtctttgaaaatcgtatgagtcatgtaactgagctgcagaaatttggagctaatattcaggtctctggaagcagagcaactgtttatgggaagggaaaggcaagtccactccgcggttctcaggtcaacgcaactgatttgcgtgggggaatgtcattggttttggctggtctggctgctgaaggaattactgaaatcagtggaatctcccatgttgataggggttatgaaaatttggaaatgaaacttcaaggtctcggtgccaacgtcataaggacgacaacaacaacattccccgtgtaatcccaccaggtgaggtctggaaaagaatgtgtataacttccgggtttactcgtgtaggacttataagtaaagatcgaagagcaagcttgaagaatagctggggatgttgaaactgtgagattattcattgcatttcgcaatagccaaattttgcagctttagacaaggctcatttgtcgatttctataatcagcttaattgtcactaaacatagtaattcataactactttgatttgcccaagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="108983" stop="107421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108683" g_stop="108590" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108589" i_stop="108326" i_length="264">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108325" g_stop="108247" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="173" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108246" i_stop="108164" i_length="83">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108163" g_stop="107721" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="616" r_length="443" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="617" polyA_stop="626"/>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E346337" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108683" e_stop="108590"/>
          <exon e_start="108325" e_stop="108247"/>
          <exon e_start="108163" e_stop="107721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGATCTCCAGCCACTGACAATGGCGTTGCTATCAACGTGCAAGGGTGTCAGCGTCATTGAGGAATCTGTCTTTGAAAATCGTATGAGTCATGGTATGTGATGACTTTTGGTTGTTCGTCTACAGTCTAGTTTCTTTCCAAAATCTCCTACATAGCTTGTGTTTGACATTTATCCACATAGAAGTTATTCTACAAATATGGATTACTATAATTTTTTAATTAGTCGACATCAACTTAAGTCTCACACAATTGCTAAAGAATATCTGGTCAGAATGCCTACAGAACCGTTTGCTATTTTTTCGACAGATAATTGTAACGATTTTTCTTTCAAAAGTTTCATTATCTTCTTTTGTGCAGTAACTGAGCTGCAGAAATTTGGAGCTAATATTCAGGTCTCTGGAAGCAGAGCAACTGTTTATGGGAAGGGAAAGGCAAGGTACGTTTATAGTTCTTGCTTGATTTCCTCATGTTCTATACAAACTATATCGCGTATTGATGTTGTTATGTATCTTCTGCTAGTCCACTCCGCGGTTCTCAGGTCAACGCAACTGATTTGCGTGGGGGAATGTCATTGGTTTTGGCTGGTCTGGCTGCTGAAGGAATTACTGAAATCAGTGGAATCTCCCATGTTGATAGGGGTTATGAAAATTTGGAAATGAAACTTCAAGGTCTCGGTGCCAACGTCATAAGGACGACAACAACAACATTCCCCGTGTAATCCCACCAGGTGAGGTCTGGAAAAGAATGTGTATAACTTCCGGGTTTACTCGTGTAGGACTTATAAGTAAAGATCGAAGAGCAAGCTTGAAGAATAGCTGGGGATGTTGAAACTGTGAGATTATTCATTGCATTTCGCAATAGCCAAATTTTGCAGCTTTAGACAAGGCTCATTTGTCGATTTCTATAATCAGCTTAATTGTCACTAAACATAGTAATTCATAACTACTTTGATTTGCCCAAGA</genome_strand>
        <mrna_strand>ACAGATCTCCAGCCACTGACAATGGCGTTGCTATCAACGTGCAAGGGTGTCAGCGTCATTGAGGAATCTGTCTTTGAAAATCGTATGAGTCATG........................................................................................................................................................................................................................................................................TAACTGAGCTGCAGAAATTTGGAGCTAATATTCAGGTCTCTGGAAGCAGAGCAACTGTTTATGGGAAGGGAAAGGCAAG...................................................................................TCCACTCCGCGGTTCTCAGGTCAACGCAACTGATTTGCGTGGGGGAATGTCATTGGTTTTGGCTGGTCTGGCTGCTGAAGGAATTACTGAAATCAGTGGAATCTCCCATGTTGATAGGGGTTATGAAAATTTGGAAATGAAACTTCAAGGTCTCGGTGCCAACGTCATAAGGACGACAACAACAACATTCCCCGTGTAATCCCACCAGGTGAGGTCTGGAAAAGAATGTGTATAACTTCCGGGTTTACTCGTGTAGGACTTATAAGTAAAGATCGAAGAGCAAGCTTGAAGAATAGCTGGGGATGTTGAAACTGTGAGATTATTCATTGCATTTCGCAATAGCCAAATTTTGCAGCTTTAGACAAGGCTCATTTGTCGATTTCTATAATCAGCTTAATTGTCACTAAACATAGTAATTCATAACTACTTTGATTTGCCCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E233369" ref_strand="+" ref_description="SGN-E233369 [cLED-9-E16]">
      <seq>agctttcagcagtacctcggatgattggagatgatttgcgggggttcaatatcaaaacaaatccatttccaggatttccaacagatctccagccactgacaatggcgttgctatcaacgtgcaagggtgtcagcgtcattgaggaatctgtctttgaaaatcgtatgagtcatgtaactgagctgcagaaatttggagctaatattcaggtctctggaagcagagcaactgtttatgggaagggaaaggcaagtccactccgcggttctcaggtcaacgcaactgatttgcgtgggggaatgtcattggttttggctggtctggctgctgaaggaattactgaaatcagtggaatcttccatgttgataggggttatgaaaatttggaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="109063" stop="107725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108763" g_stop="108590" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108589" i_stop="108326" i_length="264">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108325" g_stop="108247" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="253" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108246" i_stop="108164" i_length="83">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108163" g_stop="108025" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="392" r_length="139" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E233369" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108763" e_stop="108590"/>
          <exon e_start="108325" e_stop="108247"/>
          <exon e_start="108163" e_stop="108025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTCAGCAGTACCTCGGATGATTGGAGATGATTTGCGGGGGTTCAATATCAAAACAAATCCATTTCCAGGATTTCCAACAGATCTCCAGCCACTGACAATGGCGTTGCTATCAACGTGCAAGGGTGTCAGCGTCATTGAGGAATCTGTCTTTGAAAATCGTATGAGTCATGGTATGTGATGACTTTTGGTTGTTCGTCTACAGTCTAGTTTCTTTCCAAAATCTCCTACATAGCTTGTGTTTGACATTTATCCACATAGAAGTTATTCTACAAATATGGATTACTATAATTTTTTAATTAGTCGACATCAACTTAAGTCTCACACAATTGCTAAAGAATATCTGGTCAGAATGCCTACAGAACCGTTTGCTATTTTTTCGACAGATAATTGTAACGATTTTTCTTTCAAAAGTTTCATTATCTTCTTTTGTGCAGTAACTGAGCTGCAGAAATTTGGAGCTAATATTCAGGTCTCTGGAAGCAGAGCAACTGTTTATGGGAAGGGAAAGGCAAGGTACGTTTATAGTTCTTGCTTGATTTCCTCATGTTCTATACAAACTATATCGCGTATTGATGTTGTTATGTATCTTCTGCTAGTCCACTCCGCGGTTCTCAGGTCAACGCAACTGATTTGCGTGGGGGAATGTCATTGGTTTTGGCTGGTCTGGCTGCTGAAGGAATTACTGAAATCAGTGGAATCTCCCATGTTGATAGGGGTTATGAAAATTTGGAAATG</genome_strand>
        <mrna_strand>AGCTTTCAGCAGTACCTCGGATGATTGGAGATGATTTGCGGGGGTTCAATATCAAAACAAATCCATTTCCAGGATTTCCAACAGATCTCCAGCCACTGACAATGGCGTTGCTATCAACGTGCAAGGGTGTCAGCGTCATTGAGGAATCTGTCTTTGAAAATCGTATGAGTCATG........................................................................................................................................................................................................................................................................TAACTGAGCTGCAGAAATTTGGAGCTAATATTCAGGTCTCTGGAAGCAGAGCAACTGTTTATGGGAAGGGAAAGGCAAG...................................................................................TCCACTCCGCGGTTCTCAGGTCAACGCAACTGATTTGCGTGGGGGAATGTCATTGGTTTTGGCTGGTCTGGCTGCTGAAGGAATTACTGAAATCAGTGGAATCTTCCATGTTGATAGGGGTTATGAAAATTTGGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E333732" ref_strand="+" ref_description="SGN-E333732 [cTOD-22-C14]">
      <seq>ttccccaagttcttccacctttagaccctaaacttgttgtaaatggtgggtctacactctctggtcatgtcactgttagtggctccaagaactcagctttacctattcttgctgcaaccctttgctgttctggatcttcaaaccttaaaaatgtaccctgtttatcagatactagaacaatggcttcaatcttggagtctttgggtgctcaagttatgagttgtggtggtgatttggtggttaacaccgatggaattgtgtctgtagagcctgatttgagttatattgggaaacttagaggtgggtttttcgtgatagggccattactggctaaatttggtgaggctactgtcgggttacccggtgggtgtgacattggggcccgacccattgatttttacattcatggtctacgtgctcttggtgctacggttgagttgaggtcagtgaacatcattcgagtgaatttctattccttttccgcatactaactaaaagtagactgtaaatgtctcantgaggtggtgtgagaggttgacnatgacgagcattangagtgacaggggcaagccgaaagagcagntggggaaagtgattagacatgaaatgatgcatcttgagtttaccgaggacttgaccttagatatgangtttggaggctggggagtangttagaagggtaatttgctagttgaaagttctcttgcttttctgcgggataagattatcgatagtagtactactctcgtagttttgttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="111052" stop="109691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110752" g_stop="109991" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="762" r_length="762" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E333732" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110752" e_stop="109991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCCAAGTTCTTCCACCTTTAGACCCTAAACTTGTTGTAAATGGTGGGTCTACACTCTCTGGTCATGTCACTGTTAGTGGCTCCAAGAACTCAGCTTTACCTATTCTTGCTGCAACCCTTTGCTGTTCTGGATCTTCAAACCTTAAAAATGTACCCTGTTTATCAGATACTAGAACAATGGCTTCAATCTTGGAGTCTTTGGGTGCTCAAGTTATGAGTTGTGGTGGTGATTTGGTGGTTAACACCGATGGAATTGTGTCTGTAGAGCCTGATTTGAGTTATATTGGGAAACTTAGAGGTGGGTTTTTCGTGATAGGGCCATTACTGGCTAAATTTGGTGAGGCTACTGTCGGGTTACCCGGTGGGTGTGACATTGGGGCCCGACCCATTGATTTTTACATTCATGGTCTACGTGCTCTTGGTGCTACGGTTGAGTTGAGGTCAGTGAACATCATTCGAGTGAATTTCTATTCCTTTTCCGCATACTAACTAAAAGTAGACTGTAGATGTCTCAGTGAGGTGGTGTGAGAGGTTGACAATGACGAGCATTAGGAGTGACAGGGGCAAGCCGAAGAAGCAGTGGGGGAAAGTGATTAGACATGAAATGATGCATCTTGAGTTTACCGAGGACTTGACCTTAGATATGAGGTTTGGAGGCTGGGGAGTAGGTTAGAAGGTTAATTTGCTAGTTGAAAGTTCTCTTGCTTTTCTGCGGGATAAGATTATCGATAGTAGTACTACTCTCGTAGTTTTGTTCTTC</genome_strand>
        <mrna_strand>TTCCCCAAGTTCTTCCACCTTTAGACCCTAAACTTGTTGTAAATGGTGGGTCTACACTCTCTGGTCATGTCACTGTTAGTGGCTCCAAGAACTCAGCTTTACCTATTCTTGCTGCAACCCTTTGCTGTTCTGGATCTTCAAACCTTAAAAATGTACCCTGTTTATCAGATACTAGAACAATGGCTTCAATCTTGGAGTCTTTGGGTGCTCAAGTTATGAGTTGTGGTGGTGATTTGGTGGTTAACACCGATGGAATTGTGTCTGTAGAGCCTGATTTGAGTTATATTGGGAAACTTAGAGGTGGGTTTTTCGTGATAGGGCCATTACTGGCTAAATTTGGTGAGGCTACTGTCGGGTTACCCGGTGGGTGTGACATTGGGGCCCGACCCATTGATTTTTACATTCATGGTCTACGTGCTCTTGGTGCTACGGTTGAGTTGAGGTCAGTGAACATCATTCGAGTGAATTTCTATTCCTTTTCCGCATACTAACTAAAAGTAGACTGTAAATGTCTCANTGAGGTGGTGTGAGAGGTTGACNATGACGAGCATTANGAGTGACAGGGGCAAGCCGAAAGAGCAGNTGGGGAAAGTGATTAGACATGAAATGATGCATCTTGAGTTTACCGAGGACTTGACCTTAGATATGANGTTTGGAGGCTGGGGAGTANGTTAGAAGGGTAATTTGCTAGTTGAAAGTTCTCTTGCTTTTCTGCGGGATAAGATTATCGATAGTAGTACTACTCTCGTAGTTTTGTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E333680" ref_strand="+" ref_description="SGN-E333680 [cTOD-22-P18]">
      <seq>ttccccaagttcttccacctttagaccctaaacttgttgtaaatggtgggtctacactctctggtcatgtcactgttagtggctccaagaactcagctttacctattcttgctgcaaccctttgctgttctggatcttcaaaccttaaaaatgtaccctgtttatcagatactagaacaatggcttcaatcttggagtctttgggtgctcaagttatgagttgtggtggtgatttggtggttaacaccgatggaattgtgtctgtagagcctgatttgagttatattgggaaacttagaggtgggtttttcgtgatagggccattactggctaaatttggtgaggctactgtcgggttacccggtgggtgtgacattggggcccgacccattgatttttacattcatggtctacgtgctcttggtgctacggttgagttgaggtcagtgaacatcattcgagtgaatttctattccttttccgcatactaactaaaagtagactgtagatgtctcagtgaggtggtgtgagaggttgacaatgacgagcattaggagtgacaggggcaagccgaagaagcagtgggggaaagtgattagacatgaaatgatgcatcttgagtttaccgaggacttgaccttagatatgangtttggaggctggggagtaggttagaaggttaatttgctagttgaaagttctcttgcttttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="111052" stop="109739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110752" g_stop="110039" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="714" r_length="714" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E333680" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110752" e_stop="110039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCCAAGTTCTTCCACCTTTAGACCCTAAACTTGTTGTAAATGGTGGGTCTACACTCTCTGGTCATGTCACTGTTAGTGGCTCCAAGAACTCAGCTTTACCTATTCTTGCTGCAACCCTTTGCTGTTCTGGATCTTCAAACCTTAAAAATGTACCCTGTTTATCAGATACTAGAACAATGGCTTCAATCTTGGAGTCTTTGGGTGCTCAAGTTATGAGTTGTGGTGGTGATTTGGTGGTTAACACCGATGGAATTGTGTCTGTAGAGCCTGATTTGAGTTATATTGGGAAACTTAGAGGTGGGTTTTTCGTGATAGGGCCATTACTGGCTAAATTTGGTGAGGCTACTGTCGGGTTACCCGGTGGGTGTGACATTGGGGCCCGACCCATTGATTTTTACATTCATGGTCTACGTGCTCTTGGTGCTACGGTTGAGTTGAGGTCAGTGAACATCATTCGAGTGAATTTCTATTCCTTTTCCGCATACTAACTAAAAGTAGACTGTAGATGTCTCAGTGAGGTGGTGTGAGAGGTTGACAATGACGAGCATTAGGAGTGACAGGGGCAAGCCGAAGAAGCAGTGGGGGAAAGTGATTAGACATGAAATGATGCATCTTGAGTTTACCGAGGACTTGACCTTAGATATGAGGTTTGGAGGCTGGGGAGTAGGTTAGAAGGTTAATTTGCTAGTTGAAAGTTCTCTTGCTTTTCTG</genome_strand>
        <mrna_strand>TTCCCCAAGTTCTTCCACCTTTAGACCCTAAACTTGTTGTAAATGGTGGGTCTACACTCTCTGGTCATGTCACTGTTAGTGGCTCCAAGAACTCAGCTTTACCTATTCTTGCTGCAACCCTTTGCTGTTCTGGATCTTCAAACCTTAAAAATGTACCCTGTTTATCAGATACTAGAACAATGGCTTCAATCTTGGAGTCTTTGGGTGCTCAAGTTATGAGTTGTGGTGGTGATTTGGTGGTTAACACCGATGGAATTGTGTCTGTAGAGCCTGATTTGAGTTATATTGGGAAACTTAGAGGTGGGTTTTTCGTGATAGGGCCATTACTGGCTAAATTTGGTGAGGCTACTGTCGGGTTACCCGGTGGGTGTGACATTGGGGCCCGACCCATTGATTTTTACATTCATGGTCTACGTGCTCTTGGTGCTACGGTTGAGTTGAGGTCAGTGAACATCATTCGAGTGAATTTCTATTCCTTTTCCGCATACTAACTAAAAGTAGACTGTAGATGTCTCAGTGAGGTGGTGTGAGAGGTTGACAATGACGAGCATTAGGAGTGACAGGGGCAAGCCGAAGAAGCAGTGGGGGAAAGTGATTAGACATGAAATGATGCATCTTGAGTTTACCGAGGACTTGACCTTAGATATGANGTTTGGAGGCTGGGGAGTAGGTTAGAAGGTTAATTTGCTAGTTGAAAGTTCTCTTGCTTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E333749" ref_strand="+" ref_description="SGN-E333749 [cTOD-22-K18]">
      <seq>ttccccaagttcttccacctttagaccctaaacttgttgtaaatggtgggtctacactctctggtcatgtcactgttagtggctccaagaactcagctttacctattcttgctgcaaccctttgctgttctggatcttcaaaccttaaaaatgtaccctgtttatcagatactagaacaatggcttcaatcttggagtctttgggtgctcaagttatgagttgtggtggtgatttggtggttaacaccgatggaattgtgtctgtagagcctgatttgagttatattgggaaacttagaggtgggtttttcgtgatagggccattactggctaaatttggtgaggctactgtcgggttacccggtgggtgtgacattggggcccgacccattgatttttacattcatggtctacgtgctcttggtgctacggttgagttgaggtcagtgaacatcattcgagtgaatttctattccttttccgcatactaactaaaagtagactgtagatgtctcantgaggtggtgtgagaggttgacaatgacgagcattaggagtgacaggggcaagccgaagaagcagtgggggaaagtgattagacatgaaatgatgcatcttgagtttaccgangacttgacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="111052" stop="109812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110752" g_stop="110112" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E333749" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110752" e_stop="110112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCCAAGTTCTTCCACCTTTAGACCCTAAACTTGTTGTAAATGGTGGGTCTACACTCTCTGGTCATGTCACTGTTAGTGGCTCCAAGAACTCAGCTTTACCTATTCTTGCTGCAACCCTTTGCTGTTCTGGATCTTCAAACCTTAAAAATGTACCCTGTTTATCAGATACTAGAACAATGGCTTCAATCTTGGAGTCTTTGGGTGCTCAAGTTATGAGTTGTGGTGGTGATTTGGTGGTTAACACCGATGGAATTGTGTCTGTAGAGCCTGATTTGAGTTATATTGGGAAACTTAGAGGTGGGTTTTTCGTGATAGGGCCATTACTGGCTAAATTTGGTGAGGCTACTGTCGGGTTACCCGGTGGGTGTGACATTGGGGCCCGACCCATTGATTTTTACATTCATGGTCTACGTGCTCTTGGTGCTACGGTTGAGTTGAGGTCAGTGAACATCATTCGAGTGAATTTCTATTCCTTTTCCGCATACTAACTAAAAGTAGACTGTAGATGTCTCAGTGAGGTGGTGTGAGAGGTTGACAATGACGAGCATTAGGAGTGACAGGGGCAAGCCGAAGAAGCAGTGGGGGAAAGTGATTAGACATGAAATGATGCATCTTGAGTTTACCGAGGACTTGACCTT</genome_strand>
        <mrna_strand>TTCCCCAAGTTCTTCCACCTTTAGACCCTAAACTTGTTGTAAATGGTGGGTCTACACTCTCTGGTCATGTCACTGTTAGTGGCTCCAAGAACTCAGCTTTACCTATTCTTGCTGCAACCCTTTGCTGTTCTGGATCTTCAAACCTTAAAAATGTACCCTGTTTATCAGATACTAGAACAATGGCTTCAATCTTGGAGTCTTTGGGTGCTCAAGTTATGAGTTGTGGTGGTGATTTGGTGGTTAACACCGATGGAATTGTGTCTGTAGAGCCTGATTTGAGTTATATTGGGAAACTTAGAGGTGGGTTTTTCGTGATAGGGCCATTACTGGCTAAATTTGGTGAGGCTACTGTCGGGTTACCCGGTGGGTGTGACATTGGGGCCCGACCCATTGATTTTTACATTCATGGTCTACGTGCTCTTGGTGCTACGGTTGAGTTGAGGTCAGTGAACATCATTCGAGTGAATTTCTATTCCTTTTCCGCATACTAACTAAAAGTAGACTGTAGATGTCTCANTGAGGTGGTGTGAGAGGTTGACAATGACGAGCATTAGGAGTGACAGGGGCAAGCCGAAGAAGCAGTGGGGGAAAGTGATTAGACATGAAATGATGCATCTTGAGTTTACCGANGACTTGACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E329229" ref_strand="+" ref_description="SGN-E329229 [cTOD-2-A18]">
      <seq>cagattttctctttttctgttttagttcaatgggtacattttgtttctgttcatcaatgacttcaaagttcaatgttccccaagttcttccacctttagaccctaaacttgttgtaaatggtgggtctacactctctggtcatgtcactgttagtggctccaagaactcagctttacctattcttgctgcaaccctttgctgttctggatcttcaaaccttaaaaatgtaccctgtttatcagatactagaacaatggcttcaatcttggagtctttgggtgctcaagttatgagttgtggtggtgatttggtggttaacaccgatggaattgtgtctgtagagcctgatttgagttatattgggaaacttagaggtgggtttttcgtgatagggccattactggctaaatttggtgaggctactgtcgggttacccggtgggtgtgacattggggcccgacccattgatttttacattcatggtctacgtgctcttggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="111127" stop="110026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110827" g_stop="110326" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E329229" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110827" e_stop="110326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTTTCTCTTTTTCTGTTTTAGTTCAATGGGTACATTTTGTTTCTGTTCATCAATGACTTCAAAGTTCAATGTTCCCCAAGTTCTTCCACCTTTAGACCCTAAACTTGTTGTAAATGGTGGGTCTACACTCTCTGGTCATGTCACTGTTAGTGGCTCCAAGAACTCAGCTTTACCTATTCTTGCTGCAACCCTTTGCTGTTCTGGATCTTCAAACCTTAAAAATGTACCCTGTTTATCAGATACTAGAACAATGGCTTCAATCTTGGAGTCTTTGGGTGCTCAAGTTATGAGTTGTGGTGGTGATTTGGTGGTTAACACCGATGGAATTGTGTCTGTAGAGCCTGATTTGAGTTATATTGGGAAACTTAGAGGTGGGTTTTTCGTGATAGGGCCATTACTGGCTAAATTTGGTGAGGCTACTGTCGGGTTACCCGGTGGGTGTGACATTGGGGCCCGACCCATTGATTTTTACATTCATGGTCTACGTGCTCTTGGTGC</genome_strand>
        <mrna_strand>CAGATTTTCTCTTTTTCTGTTTTAGTTCAATGGGTACATTTTGTTTCTGTTCATCAATGACTTCAAAGTTCAATGTTCCCCAAGTTCTTCCACCTTTAGACCCTAAACTTGTTGTAAATGGTGGGTCTACACTCTCTGGTCATGTCACTGTTAGTGGCTCCAAGAACTCAGCTTTACCTATTCTTGCTGCAACCCTTTGCTGTTCTGGATCTTCAAACCTTAAAAATGTACCCTGTTTATCAGATACTAGAACAATGGCTTCAATCTTGGAGTCTTTGGGTGCTCAAGTTATGAGTTGTGGTGGTGATTTGGTGGTTAACACCGATGGAATTGTGTCTGTAGAGCCTGATTTGAGTTATATTGGGAAACTTAGAGGTGGGTTTTTCGTGATAGGGCCATTACTGGCTAAATTTGGTGAGGCTACTGTCGGGTTACCCGGTGGGTGTGACATTGGGGCCCGACCCATTGATTTTTACATTCATGGTCTACGTGCTCTTGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E726050" ref_strand="+" ref_description="SGN-E726050 [LA10AF04]">
      <seq>caaacttcaactcctcaatatcccagattttctttttttctgttttagttcaatgggtacattttgtttctgttcatcaatgacttcaaagttcaatgttccccaagttcttccacctttagaccctaaacttgttgtaaatggtgggtctacactctctggtcatgtcactgttagtggctccaagaactcagctttacctattcttgctgcaaccctttgctgttctggatcttcaaaccttaaaaatgtaccctgtttatcagatactagaacaatggcttcaatcttggagtctttgggtgctcaagttatgagttgtggtggtgatttggtggttaacaccgatggaattgtgtctgtagagcctgatttgagttatattgggaaacttagaggtgggtttttcgtgatagggccattactggctaaatttggtgaggctactgtcgggttacccggtgggtgtgacattggagcccgacccgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="111150" stop="110059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110850" g_stop="110359" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E726050" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110850" e_stop="110359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTTCAACTCCTCAATATCCCAGATTTTCTCTTTTTCTGTTTTAGTTCAATGGGTACATTTTGTTTCTGTTCATCAATGACTTCAAAGTTCAATGTTCCCCAAGTTCTTCCACCTTTAGACCCTAAACTTGTTGTAAATGGTGGGTCTACACTCTCTGGTCATGTCACTGTTAGTGGCTCCAAGAACTCAGCTTTACCTATTCTTGCTGCAACCCTTTGCTGTTCTGGATCTTCAAACCTTAAAAATGTACCCTGTTTATCAGATACTAGAACAATGGCTTCAATCTTGGAGTCTTTGGGTGCTCAAGTTATGAGTTGTGGTGGTGATTTGGTGGTTAACACCGATGGAATTGTGTCTGTAGAGCCTGATTTGAGTTATATTGGGAAACTTAGAGGTGGGTTTTTCGTGATAGGGCCATTACTGGCTAAATTTGGTGAGGCTACTGTCGGGTTACCCGGTGGGTGTGACATTGGGGCCCGACCCATTGA</genome_strand>
        <mrna_strand>CAAACTTCAACTCCTCAATATCCCAGATTTTCTTTTTTTCTGTTTTAGTTCAATGGGTACATTTTGTTTCTGTTCATCAATGACTTCAAAGTTCAATGTTCCCCAAGTTCTTCCACCTTTAGACCCTAAACTTGTTGTAAATGGTGGGTCTACACTCTCTGGTCATGTCACTGTTAGTGGCTCCAAGAACTCAGCTTTACCTATTCTTGCTGCAACCCTTTGCTGTTCTGGATCTTCAAACCTTAAAAATGTACCCTGTTTATCAGATACTAGAACAATGGCTTCAATCTTGGAGTCTTTGGGTGCTCAAGTTATGAGTTGTGGTGGTGATTTGGTGGTTAACACCGATGGAATTGTGTCTGTAGAGCCTGATTTGAGTTATATTGGGAAACTTAGAGGTGGGTTTTTCGTGATAGGGCCATTACTGGCTAAATTTGGTGAGGCTACTGTCGGGTTACCCGGTGGGTGTGACATTGGAGCCCGACCCGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E326687" ref_strand="+" ref_description="SGN-E326687 [cTOC-17-L3]">
      <seq>tttgtctgatacttcaacaatggcttcaattttgaagtctttgggtgctcgggttacgagttttgatggagatattgtggttaatacagatgggatggtgtctgtagagcctgatttgagtgatattggaaaaatcagaggtgggttttttgtattagggccattactggctagatttggtgaagctattgttgggttacccggtggatgtgacattggggcccgacccggtgatctttatattcatgggcttcctgctcttggtgccacagttgagttgagggtaatgacttttctaatatttttcctttactaactaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="-" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="112263" stop="111343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111963" g_stop="111643" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="-" ref_id="SGN-E326687" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111963" e_stop="111643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTCTGATACTTCAACAATGGCTTCAATTTTGAAGTCTTTGGGTGCTCGGGTTACGAGTTTTGATGGAGATATTGTGGTTAATACAGATGGGATGGTGTCTGTAGAGCCTGATTTGAGTGATATTGGAAAAATCAGAGGTGGGTTTTTTGTATTAGGGCCATTACTGGCTAGATTTGGTGAAGCTATTGTTGGGTTACCCGGTGGATGTGACATTGGGGCCCGACCCGTTGATCTTTATATTCATGGTCTTCGTGCTCTTGGTGCAACAGTTGAGTTGAGGTTAGTGACTTTTCTAATATTTTTCATTTACTAACTAAA</genome_strand>
        <mrna_strand>TTTGTCTGATACTTCAACAATGGCTTCAATTTTGAAGTCTTTGGGTGCTCGGGTTACGAGTTTTGATGGAGATATTGTGGTTAATACAGATGGGATGGTGTCTGTAGAGCCTGATTTGAGTGATATTGGAAAAATCAGAGGTGGGTTTTTTGTATTAGGGCCATTACTGGCTAGATTTGGTGAAGCTATTGTTGGGTTACCCGGTGGATGTGACATTGGGGCCCGACCCGGTGATCTTTATATTCATGGGCTTCCTGCTCTTGGTGCCACAGTTGAGTTGAGGGTAATGACTTTTCTAATATTTTTCCTTTACTAACTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E373981" ref_strand="-" ref_description="SGN-E373981 [TUS-33-O1]">
      <seq>aataaacaaaaacaaaaaatcaaatcaaaaattaaaatcagaaatggcaaaagctatcattctcctctctaccctttgcgttttggctgtcgccaatttcgccgttgccgacgttgaaacgttcaacgtcgaaggcaaagtcttttgtgatacctgccgtcttggtttcgtcacctccctcagcaatacccttgaaggtgccacggtgcgtatgacatgcaaggacatggagacacacaacgagacatttacaactgaaggcaaaacggatagtattggcaaatatacattgaaagttgaaggtgaccatgagaatgatatttgtgaggttacattggtgaacagtccaaaagatgattgcaaagaagttgttccagatatggttaataacagagttatttgcagtaaaaatgtagggatgcacaatgctgttcgttttgtgaacccattgttctaccaaaaggacaaaccaatcgatggttgcgcaaaacttgttgaggagatggagcttgttgatctcttgattcttgaaaatgacaaagaagagaattaagagagaacatatatatagagagagagcgcttttgcatcattcatcatttatatattaagaagaatattaaatctgttataatttctcctttgatgtgtaactcaacatggaaaaattaaaaaattccatgaattttctaatgagaagatcaataatagcttcttagaaaaaaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="113186" stop="114606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113485" g_stop="113680" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113681" i_stop="113780" i_length="100">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113781" g_stop="114305" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="721" r_length="524" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="722" polyA_stop="737"/>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E373981" ref_strand="-">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373981" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113485" e_stop="113680"/>
          <exon e_start="113781" e_stop="114305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGGAGAATAAATAAACAAA-CAAAAATAAAAATCAGAAATGGCAAAAGCTATCATCCTCCTCTCCACCCTTTGCGTTTTGGCTGTCGCCAATTTCGCGGTTGCCGACGTTGAAACGTTCAACGTCGAAGGCAAAGTCTTTTGTGATACCTGCCGTCTTGGTTTCGTCACCTCCCTCAGCAATACCCTTGAAGGTATAGTTATCTAACTTTTTTCATATTTTGATCATACTTATCATTATTCTACTACTAATTAATTTCATTACTCCCTCTGTTTTCATATTTTTGACAATAGGTGCCACGGTGCGTATGACGTGCAAGGACATGGAGACACACAACGAGACATTTACAACTGAAGGCAAAACGGATGGTATTGGCAAATATACCTTGAAGGTTGAAGGTGACCATGAGAATGATATCTGTGAGGTTACATTGGTGAACAGCCCAAAAGATGATTGCAAAGAAGTTGTTCCAGATATGGTTAATAACAGAGTTATTTGCAGTAAAAATGTAGGGATGCACAATGCTGTTCGTTTTGTGAACCCATTGTTCTATCAAAAGGACAAACCAATCGATGGTTGCGCAAAACTTGTTGAGGAGATGGAGCTTGTTGATCTATTGATTCTTGAAAATGATAAAGAAGAGAATTAAGAGAGAACATATATAGAGAGAGAGAGCGCTTTTGCATCATTCATCATTTATATATTAAGAAGAATATTAAATCTGTTATAATTTCTCCTTTGATGTGTAACTCAACATGGAAAAATTAAAAAAATTTCCATG-ATTTTCTAATGAGAAGATCAATAATAGCTTCTTAGAA</genome_strand>
        <mrna_strand>AATAAACAAAAACAAAAAATCAAATCAAAAATTAAAATCAGAAATGGCAAAAGCTATCATTCTCCTCTCTACCCTTTGCGTTTTGGCTGTCGCCAATTTCGCCGTTGCCGACGTTGAAACGTTCAACGTCGAAGGCAAAGTCTTTTGTGATACCTGCCGTCTTGGTTTCGTCACCTCCCTCAGCAATACCCTTGAAG....................................................................................................GTGCCACGGTGCGTATGACATGCAAGGACATGGAGACACACAACGAGACATTTACAACTGAAGGCAAAACGGATAGTATTGGCAAATATACATTGAAAGTTGAAGGTGACCATGAGAATGATATTTGTGAGGTTACATTGGTGAACAGTCCAAAAGATGATTGCAAAGAAGTTGTTCCAGATATGGTTAATAACAGAGTTATTTGCAGTAAAAATGTAGGGATGCACAATGCTGTTCGTTTTGTGAACCCATTGTTCTACCAAAAGGACAAACCAATCGATGGTTGCGCAAAACTTGTTGAGGAGATGGAGCTTGTTGATCTCTTGATTCTTGAAAATGACAAAGAAGAGAATTAAGAGAGAACATATATATAGAGAGAGAGCGCTTTTGCATCATTCATCATTTATATATTAAGAAGAATATTAAATCTGTTATAATTTCTCCTTTGATGTGTAACTCAACATGGAAAAATT-AAAAAA-TTCCATGAATTTTCTAATGAGAAGATCAATAATAGCTTCTTAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E373982" ref_strand="+" ref_description="SGN-E373982 [TUS-33-O1]">
      <seq>ataaacaaaaacaaaaaatcaaatcaaaaattaaaatcagaaatggcaaaagctatcattctcctctctaccctttgcgttttggctgtcgccaatttcgccgttgccgacgttgaaacgttcaacgtcgaaggcaaagtcttttgtgatacctgccgtcttggtttcgtcacctccctcagcaatacccttgaaggtgccacggtgcgtatgacatgcaaggacatggagacacacaacgagacatttacaactgaaggcaaaacggatagtattggcaaatatacattgaaagttgaaggtgaccatgagaatgatatttgtgaggttacattggtgaacagtccaaaagatgattgcaaagaagttgttccagatatggttaataacagagttatttgcagtaaaaatgtagggatgcacaatgctgttcgttttgtgaacccattgttctaccaaaaggacaaaccaatcgatggttgcgcaaaacttgttgaggagatggagcttgttgatctcttgattcttgaaaatgacaaagaagagaattaagagagaacatatatatagagagagagcgcttttgcatcattcatcatttatatattaagaagaatattaaatctgttataatttctcctttgatgtgtaactcaacatggaaaaattaaaaattccatgaattttctaatgagaagatcaataatagcttcttagaaaaaaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="113186" stop="114606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113486" g_stop="113680" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113681" i_stop="113780" i_length="100">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113781" g_stop="114305" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="719" r_length="523" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="720" polyA_stop="736"/>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E373982" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113486" e_stop="113680"/>
          <exon e_start="113781" e_stop="114305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGGAGAATAAATAAACAAA-CAAAAATAAAAATCAGAAATGGCAAAAGCTATCATCCTCCTCTCCACCCTTTGCGTTTTGGCTGTCGCCAATTTCGCGGTTGCCGACGTTGAAACGTTCAACGTCGAAGGCAAAGTCTTTTGTGATACCTGCCGTCTTGGTTTCGTCACCTCCCTCAGCAATACCCTTGAAGGTATAGTTATCTAACTTTTTTCATATTTTGATCATACTTATCATTATTCTACTACTAATTAATTTCATTACTCCCTCTGTTTTCATATTTTTGACAATAGGTGCCACGGTGCGTATGACGTGCAAGGACATGGAGACACACAACGAGACATTTACAACTGAAGGCAAAACGGATGGTATTGGCAAATATACCTTGAAGGTTGAAGGTGACCATGAGAATGATATCTGTGAGGTTACATTGGTGAACAGCCCAAAAGATGATTGCAAAGAAGTTGTTCCAGATATGGTTAATAACAGAGTTATTTGCAGTAAAAATGTAGGGATGCACAATGCTGTTCGTTTTGTGAACCCATTGTTCTATCAAAAGGACAAACCAATCGATGGTTGCGCAAAACTTGTTGAGGAGATGGAGCTTGTTGATCTATTGATTCTTGAAAATGATAAAGAAGAGAATTAAGAGAGAACATATATAGAGAGAGAGAGCGCTTTTGCATCATTCATCATTTATATATTAAGAAGAATATTAAATCTGTTATAATTTCTCCTTTGATGTGTAACTCAACATGGAAAAATTAAAAAAATTTCCATG-ATTTTCTAATGAGAAGATCAATAATAGCTTCTTAGAA</genome_strand>
        <mrna_strand>ATAAACAAAAACAAAAAATCAAATCAAAAATTAAAATCAGAAATGGCAAAAGCTATCATTCTCCTCTCTACCCTTTGCGTTTTGGCTGTCGCCAATTTCGCCGTTGCCGACGTTGAAACGTTCAACGTCGAAGGCAAAGTCTTTTGTGATACCTGCCGTCTTGGTTTCGTCACCTCCCTCAGCAATACCCTTGAAG....................................................................................................GTGCCACGGTGCGTATGACATGCAAGGACATGGAGACACACAACGAGACATTTACAACTGAAGGCAAAACGGATAGTATTGGCAAATATACATTGAAAGTTGAAGGTGACCATGAGAATGATATTTGTGAGGTTACATTGGTGAACAGTCCAAAAGATGATTGCAAAGAAGTTGTTCCAGATATGGTTAATAACAGAGTTATTTGCAGTAAAAATGTAGGGATGCACAATGCTGTTCGTTTTGTGAACCCATTGTTCTACCAAAAGGACAAACCAATCGATGGTTGCGCAAAACTTGTTGAGGAGATGGAGCTTGTTGATCTCTTGATTCTTGAAAATGACAAAGAAGAGAATTAAGAGAGAACATATATATAGAGAGAGAGCGCTTTTGCATCATTCATCATTTATATATTAAGAAGAATATTAAATCTGTTATAATTTCTCCTTTGATGTGTAACTCAACATGGAAAAATT--AAAAA-TTCCATGAATTTTCTAATGAGAAGATCAATAATAGCTTCTTAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E547428" ref_strand="+" ref_description="SGN-E547428 [TUS-71-E21]">
      <seq>gtgaaaggagaataaataaataaacaaaaacaaaaaatcaaatcaaaaattaaaatcagaaatggcaaaagctatcattctcctctctaccctttgcgttttggctgtcgccaatttcgccgttgccgacgttgaaacgttcaacgtcgaaggcaaagtcttttgtgatacctgccgtcttggtttcgtcacctccctcagcaatacccttgaaggtgccacggtgcgtatgacatgcaaggacatggagacacacaacgagacatttacaactgaaggcaaaacggatagtattggcaaatatacattgaaagttgaaggtgaccatgagaatgatatttgtgaggttacattggtgaacagtccaaaagatgattgcaaagaagttgttccagatatggttaataacagagttatttgcagtaaaaatgtagggatgcacaatgctgttcgttttgtgaacccattgttctaccaaaaggacaaaccaatcgatggttgcgcaaaacttgttgaggagatggagcttgttgatctcttgattcttgaaaatgacaaagaagagaattaagagagaacatatatatagagagagagcgcttttgcatcattcatcatttatatattaagaagaatattaaatctgttataatttctcctttgatgtgtaactcaacatggaaaaattaaaaaattccatgaattttctaatgagaagatcaataatagcttcttagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="113177" stop="114606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113506" g_stop="113680" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="215" r_length="175" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113681" i_stop="113780" i_length="100">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113781" g_stop="114306" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="740" r_length="525" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E547428" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113506" e_stop="113680"/>
          <exon e_start="113781" e_stop="114306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAAAATAAAAATCAGAAATGGCAAAAGCTATCATCCTCCTCTCCACCCTTTGCGTTTTGGCTGTCGCCAATTTCGCGGTTGCCGACGTTGAAACGTTCAACGTCGAAGGCAAAGTCTTTTGTGATACCTGCCGTCTTGGTTTCGTCACCTCCCTCAGCAATACCCTTGAAGGTATAGTTATCTAACTTTTTTCATATTTTGATCATACTTATCATTATTCTACTACTAATTAATTTCATTACTCCCTCTGTTTTCATATTTTTGACAATAGGTGCCACGGTGCGTATGACGTGCAAGGACATGGAGACACACAACGAGACATTTACAACTGAAGGCAAAACGGATGGTATTGGCAAATATACCTTGAAGGTTGAAGGTGACCATGAGAATGATATCTGTGAGGTTACATTGGTGAACAGCCCAAAAGATGATTGCAAAGAAGTTGTTCCAGATATGGTTAATAACAGAGTTATTTGCAGTAAAAATGTAGGGATGCACAATGCTGTTCGTTTTGTGAACCCATTGTTCTATCAAAAGGACAAACCAATCGATGGTTGCGCAAAACTTGTTGAGGAGATGGAGCTTGTTGATCTATTGATTCTTGAAAATGATAAAGAAGAGAATTAAGAGAGAACATATATAGAGAGAGAGAGCGCTTTTGCATCATTCATCATTTATATATTAAGAAGAATATTAAATCTGTTATAATTTCTCCTTTGATGTGTAACTCAACATGGAAAAATTAAAAAAATTTCCATG-ATTTTCTAATGAGAAGATCAATAATAGCTTCTTAGAAA</genome_strand>
        <mrna_strand>AATCAAAAATTAAAATCAGAAATGGCAAAAGCTATCATTCTCCTCTCTACCCTTTGCGTTTTGGCTGTCGCCAATTTCGCCGTTGCCGACGTTGAAACGTTCAACGTCGAAGGCAAAGTCTTTTGTGATACCTGCCGTCTTGGTTTCGTCACCTCCCTCAGCAATACCCTTGAAG....................................................................................................GTGCCACGGTGCGTATGACATGCAAGGACATGGAGACACACAACGAGACATTTACAACTGAAGGCAAAACGGATAGTATTGGCAAATATACATTGAAAGTTGAAGGTGACCATGAGAATGATATTTGTGAGGTTACATTGGTGAACAGTCCAAAAGATGATTGCAAAGAAGTTGTTCCAGATATGGTTAATAACAGAGTTATTTGCAGTAAAAATGTAGGGATGCACAATGCTGTTCGTTTTGTGAACCCATTGTTCTACCAAAAGGACAAACCAATCGATGGTTGCGCAAAACTTGTTGAGGAGATGGAGCTTGTTGATCTCTTGATTCTTGAAAATGACAAAGAAGAGAATTAAGAGAGAACATATATATAGAGAGAGAGCGCTTTTGCATCATTCATCATTTATATATTAAGAAGAATATTAAATCTGTTATAATTTCTCCTTTGATGTGTAACTCAACATGGAAAAATT-AAAAAA-TTCCATGAATTTTCTAATGAGAAGATCAATAATAGCTTCTTAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E547427" ref_strand="-" ref_description="SGN-E547427 [TUS-71-E21]">
      <seq>gtgaaaggagaataaataaataaacaaaaacaaaaaatcaaatcaaaaattaaaatcagaaatggcaaaagctatcattctcctctctaccctttgcgttttggctgtcgccaatttcgccgttgccgacgttgaaacgttcaacgtcgaaggcaaagtcttttgtgatacctgccgtcttggtttcgtcacctccctcagcaatacccttgaaggtgccacggtgcgtatgacatgcaaggacatggagacacacaacgagacatttacaactgaaggcaaaacggatagtattggcaaatatacattgaaagttgaaggtgaccatgagaatgatatttgtgaggttacattggtgaacagtccaaaagatgattgcaaagaagttgttccagatatggttaataacagagttatttgcagtaaaaatgtagggatgcacaatgctgttcgttttgtgaacccattgttctaccaaaaggacaaaccaatcgatggttgcgcaaaacttgttgaggagatggagcttgttgatctcttgattcttgaaaatgacaaagaagagaattaagagagaacatatatatagagagagagcgcttttgcatcattcatcatttatatattaagaagaatattaaatctgttataatttctcctttgatgtgtaactcaacatggaaaaattaaaaaattccatgaattttctaatgagaagatcaataatagcttcttagaaaaaaaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="113177" stop="114606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113506" g_stop="113680" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="215" r_length="175" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113681" i_stop="113780" i_length="100">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113781" g_stop="114305" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="739" r_length="524" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="740" polyA_stop="764"/>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E547427" ref_strand="-">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547427" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113506" e_stop="113680"/>
          <exon e_start="113781" e_stop="114305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAAAATAAAAATCAGAAATGGCAAAAGCTATCATCCTCCTCTCCACCCTTTGCGTTTTGGCTGTCGCCAATTTCGCGGTTGCCGACGTTGAAACGTTCAACGTCGAAGGCAAAGTCTTTTGTGATACCTGCCGTCTTGGTTTCGTCACCTCCCTCAGCAATACCCTTGAAGGTATAGTTATCTAACTTTTTTCATATTTTGATCATACTTATCATTATTCTACTACTAATTAATTTCATTACTCCCTCTGTTTTCATATTTTTGACAATAGGTGCCACGGTGCGTATGACGTGCAAGGACATGGAGACACACAACGAGACATTTACAACTGAAGGCAAAACGGATGGTATTGGCAAATATACCTTGAAGGTTGAAGGTGACCATGAGAATGATATCTGTGAGGTTACATTGGTGAACAGCCCAAAAGATGATTGCAAAGAAGTTGTTCCAGATATGGTTAATAACAGAGTTATTTGCAGTAAAAATGTAGGGATGCACAATGCTGTTCGTTTTGTGAACCCATTGTTCTATCAAAAGGACAAACCAATCGATGGTTGCGCAAAACTTGTTGAGGAGATGGAGCTTGTTGATCTATTGATTCTTGAAAATGATAAAGAAGAGAATTAAGAGAGAACATATATAGAGAGAGAGAGCGCTTTTGCATCATTCATCATTTATATATTAAGAAGAATATTAAATCTGTTATAATTTCTCCTTTGATGTGTAACTCAACATGGAAAAATTAAAAAAATTTCCATG-ATTTTCTAATGAGAAGATCAATAATAGCTTCTTAGAA</genome_strand>
        <mrna_strand>AATCAAAAATTAAAATCAGAAATGGCAAAAGCTATCATTCTCCTCTCTACCCTTTGCGTTTTGGCTGTCGCCAATTTCGCCGTTGCCGACGTTGAAACGTTCAACGTCGAAGGCAAAGTCTTTTGTGATACCTGCCGTCTTGGTTTCGTCACCTCCCTCAGCAATACCCTTGAAG....................................................................................................GTGCCACGGTGCGTATGACATGCAAGGACATGGAGACACACAACGAGACATTTACAACTGAAGGCAAAACGGATAGTATTGGCAAATATACATTGAAAGTTGAAGGTGACCATGAGAATGATATTTGTGAGGTTACATTGGTGAACAGTCCAAAAGATGATTGCAAAGAAGTTGTTCCAGATATGGTTAATAACAGAGTTATTTGCAGTAAAAATGTAGGGATGCACAATGCTGTTCGTTTTGTGAACCCATTGTTCTACCAAAAGGACAAACCAATCGATGGTTGCGCAAAACTTGTTGAGGAGATGGAGCTTGTTGATCTCTTGATTCTTGAAAATGACAAAGAAGAGAATTAAGAGAGAACATATATATAGAGAGAGAGCGCTTTTGCATCATTCATCATTTATATATTAAGAAGAATATTAAATCTGTTATAATTTCTCCTTTGATGTGTAACTCAACATGGAAAAATT-AAAAAA-TTCCATGAATTTTCTAATGAGAAGATCAATAATAGCTTCTTAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E330463" ref_strand="-" ref_description="SGN-E330463 [cTOD-4-L19]">
      <seq>tatgacgtgcaaggacatggagacacacaacgagacatttacaactgaaggcaaaacggatggtattggcaaatataccttgaaggttgaaggtgaccatgagaatgatatctgtgaggttacattggtgaacagcccaaaagatgattgcaaagaagttgttccagatatggttaataacagagttatttgcagtaaaaatgtagggatgcacaatgctgttcgttttgtgaacccattgttctatcaaaaggacaaaccaatcgatggttgcgcaaaacttgttgaggagatggagcttgttgatctattgattcttgaaaatgataaagaagagaattaagagagaacatatatagagagagagagcgcttttgcatcattcatcatttatatattaagaagaatattgaatctgctataatttctcctctgatgtggacctcaacatggaaaaattaaaaaaatttccatgattttctaatgagcagatcaataatagcttcttagaaaaaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="113494" stop="114606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113794" g_stop="114305" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="513" polyA_stop="533"/>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E330463" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330463" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113794" e_stop="114305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGACGTGCAAGGACATGGAGACACACAACGAGACATTTACAACTGAAGGCAAAACGGATGGTATTGGCAAATATACCTTGAAGGTTGAAGGTGACCATGAGAATGATATCTGTGAGGTTACATTGGTGAACAGCCCAAAAGATGATTGCAAAGAAGTTGTTCCAGATATGGTTAATAACAGAGTTATTTGCAGTAAAAATGTAGGGATGCACAATGCTGTTCGTTTTGTGAACCCATTGTTCTATCAAAAGGACAAACCAATCGATGGTTGCGCAAAACTTGTTGAGGAGATGGAGCTTGTTGATCTATTGATTCTTGAAAATGATAAAGAAGAGAATTAAGAGAGAACATATATAGAGAGAGAGAGCGCTTTTGCATCATTCATCATTTATATATTAAGAAGAATATTAAATCTGTTATAATTTCTCCTTTGATGTGTAACTCAACATGGAAAAATTAAAAAAATTTCCATGATTTTCTAATGAGAAGATCAATAATAGCTTCTTAGAA</genome_strand>
        <mrna_strand>TATGACGTGCAAGGACATGGAGACACACAACGAGACATTTACAACTGAAGGCAAAACGGATGGTATTGGCAAATATACCTTGAAGGTTGAAGGTGACCATGAGAATGATATCTGTGAGGTTACATTGGTGAACAGCCCAAAAGATGATTGCAAAGAAGTTGTTCCAGATATGGTTAATAACAGAGTTATTTGCAGTAAAAATGTAGGGATGCACAATGCTGTTCGTTTTGTGAACCCATTGTTCTATCAAAAGGACAAACCAATCGATGGTTGCGCAAAACTTGTTGAGGAGATGGAGCTTGTTGATCTATTGATTCTTGAAAATGATAAAGAAGAGAATTAAGAGAGAACATATATAGAGAGAGAGAGCGCTTTTGCATCATTCATCATTTATATATTAAGAAGAATATTGAATCTGCTATAATTTCTCCTCTGATGTGGACCTCAACATGGAAAAATTAAAAAAATTTCCATGATTTTCTAATGAGCAGATCAATAATAGCTTCTTAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E229608" ref_strand="-" ref_description="SGN-E229608 [cLEL-4-H19]">
      <seq>aatcgatggttgcgcaaaacttgttgaggagatggagcttgttgatctattgattcttgaaaatgataaagaagagaattaagagagatcatatatagagagagagagcgcttttgcatcattcatcatttatatattaagaagaatattaaatctgttataatttctcctttgatgtgtaactcaacatggaaaaattaaaaaaatttccatgattttctaatgagaagatcaataatagcttcttagaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="113755" stop="114606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114055" g_stop="114305" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="252" polyA_stop="274"/>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E229608" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>251</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229608" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="114055" e_stop="114305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGATGGTTGCGCAAAACTTGTTGAGGAGATGGAGCTTGTTGATCTATTGATTCTTGAAAATGATAAAGAAGAGAATTAAGAGAGAACATATATAGAGAGAGAGAGCGCTTTTGCATCATTCATCATTTATATATTAAGAAGAATATTAAATCTGTTATAATTTCTCCTTTGATGTGTAACTCAACATGGAAAAATTAAAAAAATTTCCATGATTTTCTAATGAGAAGATCAATAATAGCTTCTTAGAA</genome_strand>
        <mrna_strand>AATCGATGGTTGCGCAAAACTTGTTGAGGAGATGGAGCTTGTTGATCTATTGATTCTTGAAAATGATAAAGAAGAGAATTAAGAGAGATCATATATAGAGAGAGAGAGCGCTTTTGCATCATTCATCATTTATATATTAAGAAGAATATTAAATCTGTTATAATTTCTCCTTTGATGTGTAACTCAACATGGAAAAATTAAAAAAATTTCCATGATTTTCTAATGAGAAGATCAATAATAGCTTCTTAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-pAaeS1/sgn_ests_tomato_potato" ref_id="SGN-E229484" ref_strand="-" ref_description="SGN-E229484 [cLEL-4-H19]">
      <seq>aaaatggagcttgttgatctattgattcttgaaaatgataaagaagagaattaagagagaccatatatagagagagagagcgcttttgcatcattcgtcatttatatattaagaagaatattaaatctgttataatttctcctttgatgtgtaactcaacatggaaaaattaaaaaaatttccatgattttctaatgagaagatcaataatagcttcttagaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0079F09-ae8kG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0079F09.1" temp_strand="+" temp_description="C07HBa0079F09.1  AC212626.1 htgs_phase:1 submitted_to_sgn_as:gi|159145070|gb|AC212626.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0079F09, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="113784" stop="114606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114083" g_stop="114305" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="224" polyA_stop="246"/>
      <MATCH_line gen_id="C07HBa0079F09.1" gen_strand="+" ref_id="SGN-E229484" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>223</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0079F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229484" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="114083" e_stop="114305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATGGAGCTTGTTGATCTATTGATTCTTGAAAATGATAAAGAAGAGAATTAAGAGAGAACATATATAGAGAGAGAGAGCGCTTTTGCATCATTCATCATTTATATATTAAGAAGAATATTAAATCTGTTATAATTTCTCCTTTGATGTGTAACTCAACATGGAAAAATTAAAAAAATTTCCATGATTTTCTAATGAGAAGATCAATAATAGCTTCTTAGAA</genome_strand>
        <mrna_strand>AAAATGGAGCTTGTTGATCTATTGATTCTTGAAAATGATAAAGAAGAGAATTAAGAGAGACCATATATAGAGAGAGAGAGCGCTTTTGCATCATTCGTCATTTATATATTAAGAAGAATATTAAATCTGTTATAATTTCTCCTTTGATGTGTAACTCAACATGGAAAAATTAAAAAAATTTCCATGATTTTCTAATGAGAAGATCAATAATAGCTTCTTAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>275</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6324" PGL_stop="7153"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6324" e_stop="7153"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="6324" e_stop="7153" e_length="830"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6324" stop="7153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712594" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATTTTCCTTTCTCTAAGCTAAAACAATTCATTAAATTAAAACACAAAACAAATCTATTCTCCACCCAATTTATGTTTACTTTTCTTTTTTATTTTTTTTTACAAAATTGTCTTGGTAGTGTTACAAAAAATTATTCCTGGGTAGAAATTAAAACCCCTTCTTGAGAAGATAGGGAAACAATTTCAATCTATGATGTCATCAAGTGAGCAAAAAAGGGAAGTAGGAGGAAGAGAAGGAGAAGGATCATCATCAATGACCTTAACACAATCCGATCATCATCATCAGCTATCACCACCTCCTCAATTGAGTCGTTACGAGTCTCAGAAACGCCGTGATTGGAATACTTTTGGTCAATACTTGAAGAATCACAAACCCCCGGTACCTTTACCTCAGTGCAACTATAATCACGTGTTAGATTTTCTTCGATACCTAGATCAATTTGGAAAAACTAAGGTACATTTAAATGGATGTGTATTTTTTGGACAAGTGGAACAAGTTGGACCATGTACATGTCCACTTAGACAAGCATGGGGAAGTTTAGATGCACTAATTGGAAGGCTTAGAGCTGCTTATGAAGAAAATGGAGGATTACAAGAGACTAATCCATTTGCTAATAGTGCTATTAGAATTTATCTACGTGAGGTAAGAGATTCTCAAGCTAAAGCAAGGGGAATTCCTTATAAGAAGAAGAAAAAAAAGAGGAAAATTCAAATTAATTCTAGTAATAACAATGAGGTAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> *  F  S  F  L  *  A  K  T  I  H  *  I  K  T  Q  N  K  S  I  L  H  P  I  Y  V  Y  F  S  F  L  F  F  F  T  K  L  S  W  *  C  Y  K  K  L  F  L  G  R  N  *  N  P  F  L  R  R  *  G  N  N  F  N  L  *  C  H  Q  V  S  K  K  G  K  *  E  E  E  K  E  K  D  H  H  Q  *  P  *  H  N  P  I  I  I  I  S  Y  H  H  L  L  N  *  V  V  T  S  L  R  N  A  V  I  G  I  L  L  V  N  T  *  R  I  T  N  P  R  Y  L  Y  L  S  A  T  I  I  T  C  *  I  F  F  D  T  *  I  N  L  E  K  L  R  Y  I  *  M  D  V  Y  F  L  D  K  W  N  K  L  D  H  V  H  V  H  L  D  K  H  G  E  V  *  M  H  *  L  E  G  L  E  L  L  M  K  K  M  E  D  Y  K  R  L  I  H  L  L  I  V  L  L  E  F  I  Y  V  R  *  E  I  L  K  L  K  Q  G  E  F  L  I  R  R  R  K  K  R  G  K  F  K  L  I  L  V  I  T  M  R  *  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </first_frame>
            <second_frame>  N  F  P  F  S  K  L  K  Q  F  I  K  L  K  H  K  T  N  L  F  S  T  Q  F  M  F  T  F  L  F  Y  F  F  L  Q  N  C  L  G  S  V  T  K  N  Y  S  W  V  E  I  K  T  P  S  *  E  D  R  E  T  I  S  I  Y  D  V  I  K  *  A  K  K  G  S  R  R  K  R  R  R  R  I  I  I  N  D  L  N  T  I  R  S  S  S  S  A  I  T  T  S  S  I  E  S  L  R  V  S  E  T  P  *  L  E  Y  F  W  S  I  L  E  E  S  Q  T  P  G  T  F  T  S  V  Q  L  *  S  R  V  R  F  S  S  I  P  R  S  I  W  K  N  *  G  T  F  K  W  M  C  I  F  W  T  S  G  T  S  W  T  M  Y  M  S  T  *  T  S  M  G  K  F  R  C  T  N  W  K  A  *  S  C  L  *  R  K  W  R  I  T  R  D  *  S  I  C  *  *  C  Y  *  N  L  S  T  *  G  K  R  F  S  S  *  S  K  G  N  S  L  *  E  E  E  K  K  E  E  N  S  N  *  F  *  *  *  Q  *  G  K  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </second_frame>
            <third_frame>   I  F  L  S  L  S  *  N  N  S  L  N  *  N  T  K  Q  I  Y  S  P  P  N  L  C  L  L  F  F  F  I  F  F  Y  K  I  V  L  V  V  L  Q  K  I  I  P  G  *  K  L  K  P  L  L  E  K  I  G  K  Q  F  Q  S  M  M  S  S  S  E  Q  K  R  E  V  G  G  R  E  G  E  G  S  S  S  M  T  L  T  Q  S  D  H  H  H  Q  L  S  P  P  P  Q  L  S  R  Y  E  S  Q  K  R  R  D  W  N  T  F  G  Q  Y  L  K  N  H  K  P  P  V  P  L  P  Q  C  N  Y  N  H  V  L  D  F  L  R  Y  L  D  Q  F  G  K  T  K  V  H  L  N  G  C  V  F  F  G  Q  V  E  Q  V  G  P  C  T  C  P  L  R  Q  A  W  G  S  L  D  A  L  I  G  R  L  R  A  A  Y  E  E  N  G  G  L  Q  E  T  N  P  F  A  N  S  A  I  R  I  Y  L  R  E  V  R  D  S  Q  A  K  A  R  G  I  P  Y  K  K  K  K  K  K  R  K  I  Q  I  N  S  S  N  N  N  E  V  N  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6470" stop="7153"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLKPLLEKIGKQFQSMMSSSEQKREVGGREGEGSSSMTLTQSDHHHQLSPPPQLSRYESQKRRDWNTFGQYLKNHKPPVPLPQCNYNHVLDFLRYLDQFGKTKVHLNGCVFFGQVEQVGPCTCPLRQAWGSLDALIGRLRAAYEENGGLQETNPFANSAIRIYLREVRDSQAKARGIPYKKKKKKRKIQINSSNNNEVNFFFFFFFFFFFFFFFFFFFFFFFFFFFFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="7426" PGL_stop="12513"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7426" e_stop="7605"/>
            <exon e_start="7808" e_stop="8011"/>
            <exon e_start="8582" e_stop="8865"/>
            <exon e_start="10558" e_stop="10563"/>
            <exon e_start="12404" e_stop="12513"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.660" e_score="0.766"/>
          <exon-intron don_prob="0.188" acc_prob="0.292" e_score="0.833"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7426" e_stop="7605" e_length="180"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.995">
            <gDNA_intron_boundary i_start="7606" i_stop="7807" i_length="202"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7808" e_stop="8011" e_length="204"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.967">
            <gDNA_intron_boundary i_start="8012" i_stop="8581" i_length="570"/>
          </intron>
          <exon e_serial="3" e_score="0.766">
            <gDNA_exon_boundary e_start="8582" e_stop="8865" e_length="284"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.660">
            <gDNA_intron_boundary i_start="8866" i_stop="10557" i_length="1692"/>
          </intron>
          <exon e_serial="4" e_score="0.833">
            <gDNA_exon_boundary e_start="10558" e_stop="10563" e_length="6"/>
          </exon>
          <intron i_serial="4" don_prob="0.188" acc_prob="0.292">
            <gDNA_intron_boundary i_start="10564" i_stop="12403" i_length="1840"/>
          </intron>
          <exon e_serial="5" e_score="0.571">
            <gDNA_exon_boundary e_start="12404" e_stop="12513" e_length="110"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7426" stop="7605"/>
              <exon start="7808" stop="8011"/>
              <exon start="8582" stop="8842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7439" stop="7605"/>
              <exon start="7808" stop="8011"/>
              <exon start="8582" stop="8865"/>
              <exon start="10558" stop="10563"/>
              <exon start="12404" stop="12513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334657" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTATATAGTGAACAATTCTCTCTTTTAGATCACAAATCCCTTGAACAAACAAAGCAAAAACCAAATCATTTTTCTAAGTTAAAAAAAAAAAATCTGATTTTTGTTTTTCTTACTGGAAAAAAGCTTCTTTTTTTTCCTTTCTTCATCATCTGGGTTCTAAAATAAATCAAGATTCAG : GATTTTGATTTTGTAGTTTGAGTAAAAAGGGGGTTGATGGCTACTCGTAATTTGGAGAAATTTGCATCTATAGATGCACAGATGAGGCTTTTGGTACCTACTAAGGTGTCTGAAGATGATATGCTTGTTGAGTATGATGCTTTGCTTTTGGATCGATTTCTTGATATTCTTGAGGATTTGCATGGAGAGGGTATCAAAACAACA : GTCCAAAAATGTTATACCCTTTTGCTGAATTTTAAAACCCCCTTGATAACAAAAACTTGGAGGACCTTTGCAATGTTTTTAAAATTTTTGATTCTCGGGGATTCATTTGTTGTTTGCTAAAGTCAATTTTCCATTTTGCTTAACATGGCCAACTTGTCTTTAGGAGGGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTATTCAGCTA : GAACCA : ATTGTGATCCGAAGATTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> L  L  Y  S  E  Q  F  S  L  L  D  H  K  S  L  E  Q  T  K  Q  K  P  N  H  F  S  K  L  K  K  K  N  L  I  F  V  F  L  T  G  K  K  L  L  F  F  P  F  F  I  I  W  V  L  K  *  I  K  I  Q  :  D  F  D  F  V  V  *  V  K  R  G  L  M  A  T  R  N  L  E  K  F  A  S  I  D  A  Q  M  R  L  L  V  P  T  K  V  S  E  D  D  M  L  V  E  Y  D  A  L  L  L  D  R  F  L  D  I  L  E  D  L  H  G  E  G  I  K  T  T  :  V  Q  K  C  Y  T  L  L  L  N  F  K  T  P  L  I  T  K  T  W  R  T  F  A  M  F  L  K  F  L  I  L  G  D  S  F  V  V  C  *  S  Q  F  S  I  L  L  N  M  A  N  L  S  L  G  G  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  F  S  * :   N  Q :   L  *  S  E  D  L  N  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </first_frame>
            <second_frame>  Y  Y  I  V  N  N  S  L  F  *  I  T  N  P  L  N  K  Q  S  K  N  Q  I  I  F  L  S  *  K  K  K  I  *  F  L  F  F  L  L  E  K  S  F  F  F  F  L  S  S  S  S  G  F  *  N  K  S  R  F  R :   I  L  I  L  *  F  E  *  K  G  G  *  W  L  L  V  I  W  R  N  L  H  L  *  M  H  R  *  G  F  W  Y  L  L  R  C  L  K  M  I  C  L  L  S  M  M  L  C  F  W  I  D  F  L  I  F  L  R  I  C  M  E  R  V  S  K  Q  Q :   S  K  N  V  I  P  F  C  *  I  L  K  P  P  *  *  Q  K  L  G  G  P  L  Q  C  F  *  N  F  *  F  S  G  I  H  L  L  F  A  K  V  N  F  P  F  C  L  T  W  P  T  C  L  *  E  G  Y  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  S  Y  S  A   : R  T   : N  C  D  P  K  I  *  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </second_frame>
            <third_frame>   I  I  *  *  T  I  L  S  F  R  S  Q  I  P  *  T  N  K  A  K  T  K  S  F  F  *  V  K  K  K  K  S  D  F  C  F  S  Y  W  K  K  A  S  F  F  S  F  L  H  H  L  G  S  K  I  N  Q  D  S   : G  F  *  F  C  S  L  S  K  K  G  V  D  G  Y  S  *  F  G  E  I  C  I  Y  R  C  T  D  E  A  F  G  T  Y  *  G  V  *  R  *  Y  A  C  *  V  *  C  F  A  F  G  S  I  S  *  Y  S  *  G  F  A  W  R  G  Y  Q  N  N   : S  P  K  M  L  Y  P  F  A  E  F  *  N  P  L  D  N  K  N  L  E  D  L  C  N  V  F  K  I  F  D  S  R  G  F  I  C  C  L  L  K  S  I  F  H  F  A  *  H  G  Q  L  V  F  R  R  V  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  I  Q  L  :  E  P  :  I  V  I  R  R  F  E  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7829" stop="8011"/>
                    <exon start="8582" stop="8701"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKRGLMATRNLEKFASIDAQMRLLVPTKVSEDDMLVEYDALLLDRFLDILEDLHGEGIKTTVQKCYTLLLNFKTPLITKTWRTFAMFLKFLILGDSFVVC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8725" stop="8865"/>
                    <exon start="10558" stop="10563"/>
                    <exon start="12404" stop="12511"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HGQLVFRRVIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFLIQLEPIVIRRFEFFFFFFFFFFFFFFFFFFFFFFFFFFFFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="18118" PGL_stop="18567"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18118" e_stop="18567"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="18118" e_stop="18567" e_length="450"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18118" stop="18440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18118" stop="18409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18118" stop="18269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18119" stop="18567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATATTTTTTTTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTTACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCTTTTTTCTCTGCAATATTTGAAGTAAAATGTCTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATATAAAACAGAAACAGAATTATACACTTCTGTGTATAAAGTGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGAGAGACGCTGGCAAATTTTTAGCTAATGTTTTCTATGGAGCACAATTAAATCAAACCCTAGCTATTCTATTTATTTTAGGTTATTAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  I  F  F  F  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  V  R  E  N  C  I  L  L  Q  L  Y  N  S  Q  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  I  K  Q  K  Q  N  Y  T  L  L  C  I  K  *  E  R  R  A  R  M  E  S  G  E  R  D  F  W  E  R  D  A  G  K  F  L  A  N  V  F  Y  G  A  Q  L  N  Q  T  L  A  I  L  F  I  L  G  Y  * </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  Y  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  Y  C  N  C  I  I  R  N  C  I  I  R  W  L  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  *  N  R  N  R  I  I  H  F  C  V  *  S  E  R  G  E  R  E  W  R  V  A  S  E  I  F  G  R  E  T  L  A  N  F  *  L  M  F  S  M  E  H  N  *  I  K  P  *  L  F  Y  L  F  *  V  I   </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  I  F  F  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  I  V  *  F  V  G  F  F  L  C  N  I  *  S  K  M  S  V  N  C  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  L  Y  T  S  V  Y  K  V  R  E  A  S  E  N  G  E  W  R  A  R  F  L  G  E  R  R  W  Q  I  F  S  *  C  F  L  W  S  T  I  K  S  N  P  S  Y  S  I  Y  F  R  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18121" stop="18321"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVCILHNYKCIARRYIFFFALYKNRNTIYTLLLYKVRENCILLQLYNSQLYNSLAFFSAIFEVKCL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18306" stop="18506"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKMSVNCIIKCITRRYTFLHVYIQFSLALYKTETELYTSVYKVREASENGEWRARFLGERRWQIFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="19983" PGL_stop="18788"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19983" e_stop="18788"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19983" e_stop="18788" e_length="1196"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19983" stop="19527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19982" stop="19228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19980" stop="19708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19979" stop="19749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19974" stop="19456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19974" stop="19613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19973" stop="19613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19971" stop="19456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19966" stop="19195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19964" stop="19200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19964" stop="19404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19964" stop="19565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19964" stop="19598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19947" stop="19612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19891" stop="19472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19200" stop="18788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206270" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACAAACTAAACATGTCTCCTTCATGGCCTACTACACTTCTTGCCTCTCTATTTCTCTTCTCCCAAATATTTTCTTGCATTGCCCAAGTTCCACTTGAAAACACCTTTAAATTCGTCAACGAAGGCGAATTAGGACCTTATGTCGTAGAATATCAAGCAGATTATCGCGTTCTTAGTGTTTTCAGTAATCCATTCCAGCTCTGTTTCTATAACACAACTCCTAACGCATGGACACTAGCGTTACGAATGGGCACTGTCCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAATAGAGGAAACCCCGTTAAAGAAAACGCGACCCTCACATTTGGAACTAACGGAAATCTTGTATTGGCGGATGCTGACGGTCGAATCGCTTGGCAGACCAACACAGCCAATAAAGGAGTGACAGGGTTCAAGTTGTTACCTAATGGTAACATGGTGCTACATGACTCTAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGATACTTTACTAGTGAGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGTCGGGCTTCGGTGAAAAAAAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCAAAATTGTTTGCTATCTACAATAGGACTAAGTTAGGCGTGGAATTAGCTTGGTTCGATTTTGGAAACAGTATGTTGGAATCCGTGAAATTAAATAATGGAAACCAAAGATTGAAATTGGATTATAGATTGGCAAAATCAACAAAAAGAAGTTCACATGTGATGGCATTTACTAAATATAACACAACATTAACATATCTTAGACTTGAAATTGATGGAAATTTAAAGGCTTACACTTTTGTTAGAGATGAAGAGGCAGATGAATTTCGTTGGAAGGTAACTTATCAAATGCTATAATTTAAATGTTTTTTTTAAAAAAAATAAAAAATAAAAAACGTAACTTTATAAGATAAAGGATTTTATTTCCAGTAAAATAAGTGGAGAAAATGAGTGGGTCCACAGCTATTATTTTCCTTTTTTTTTTTTGGTTGAAGGGTGTATTTTATTATAATTTCTATATATTTTTTTCTGTTAAAGGATGTATTTAATTATGTTTTCTACTATTTAAGATGCTATGACAAATGTAAAGGGTGTATTTTATTATGTTTTCTACTATTTGATATGCTATGCCAAATAGATATATTCAA</gDNA_template>
            <first_frame> N  K  L  N  M  S  P  S  W  P  T  T  L  L  A  S  L  F  L  F  S  Q  I  F  S  C  I  A  Q  V  P  L  E  N  T  F  K  F  V  N  E  G  E  L  G  P  Y  V  V  E  Y  Q  A  D  Y  R  V  L  S  V  F  S  N  P  F  Q  L  C  F  Y  N  T  T  P  N  A  W  T  L  A  L  R  M  G  T  V  R  S  E  S  L  M  R  W  V  W  E  A  N  R  G  N  P  V  K  E  N  A  T  L  T  F  G  T  N  G  N  L  V  L  A  D  A  D  G  R  I  A  W  Q  T  N  T  A  N  K  G  V  T  G  F  K  L  L  P  N  G  N  M  V  L  H  D  S  K  G  K  F  V  W  Q  S  F  N  Y  P  T  D  T  L  L  V  S  Q  T  L  R  L  S  G  P  N  K  L  V  S  R  A  S  V  K  K  N  A  N  G  P  Y  S  L  V  V  Q  P  K  L  F  A  I  Y  N  R  T  K  L  G  V  E  L  A  W  F  D  F  G  N  S  M  L  E  S  V  K  L  N  N  G  N  Q  R  L  K  L  D  Y  R  L  A  K  S  T  K  R  S  S  H  V  M  A  F  T  K  Y  N  T  T  L  T  Y  L  R  L  E  I  D  G  N  L  K  A  Y  T  F  V  R  D  E  E  A  D  E  F  R  W  K  V  T  Y  Q  M  L  *  F  K  C  F  F  *  K  K  *  K  I  K  N  V  T  L  *  D  K  G  F  Y  F  Q  *  N  K  W  R  K  *  V  G  P  Q  L  L  F  S  F  F  F  F  G  *  R  V  Y  F  I  I  I  S  I  Y  F  F  L  L  K  D  V  F  N  Y  V  F  Y  Y  L  R  C  Y  D  K  C  K  G  C  I  L  L  C  F  L  L  F  D  M  L  C  Q  I  D  I  F   </first_frame>
            <second_frame>  T  N  *  T  C  L  L  H  G  L  L  H  F  L  P  L  Y  F  S  S  P  K  Y  F  L  A  L  P  K  F  H  L  K  T  P  L  N  S  S  T  K  A  N  *  D  L  M  S  *  N  I  K  Q  I  I  A  F  L  V  F  S  V  I  H  S  S  S  V  S  I  T  Q  L  L  T  H  G  H  *  R  Y  E  W  A  L  S  V  L  N  H  S  C  V  G  C  G  K  Q  I  E  E  T  P  L  K  K  T  R  P  S  H  L  E  L  T  E  I  L  Y  W  R  M  L  T  V  E  S  L  G  R  P  T  Q  P  I  K  E  *  Q  G  S  S  C  Y  L  M  V  T  W  C  Y  M  T  L  K  V  N  S  S  G  R  V  S  T  I  P  L  I  L  Y  *  *  A  K  L  S  D  C  P  A  R  I  S  L  *  V  G  L  R  *  K  K  M  R  T  G  L  I  A  W  W  C  S  Q  N  C  L  L  S  T  I  G  L  S  *  A  W  N  *  L  G  S  I  L  E  T  V  C  W  N  P  *  N  *  I  M  E  T  K  D  *  N  W  I  I  D  W  Q  N  Q  Q  K  E  V  H  M  *  W  H  L  L  N  I  T  Q  H  *  H  I  L  D  L  K  L  M  E  I  *  R  L  T  L  L  L  E  M  K  R  Q  M  N  F  V  G  R  *  L  I  K  C  Y  N  L  N  V  F  F  K  K  N  K  K  *  K  T  *  L  Y  K  I  K  D  F  I  S  S  K  I  S  G  E  N  E  W  V  H  S  Y  Y  F  P  F  F  F  L  V  E  G  C  I  L  L  *  F  L  Y  I  F  F  C  *  R  M  Y  L  I  M  F  S  T  I  *  D  A  M  T  N  V  K  G  V  F  Y  Y  V  F  Y  Y  L  I  C  Y  A  K  *  I  Y  S  </second_frame>
            <third_frame>   Q  T  K  H  V  S  F  M  A  Y  Y  T  S  C  L  S  I  S  L  L  P  N  I  F  L  H  C  P  S  S  T  *  K  H  L  *  I  R  Q  R  R  R  I  R  T  L  C  R  R  I  S  S  R  L  S  R  S  *  C  F  Q  *  S  I  P  A  L  F  L  *  H  N  S  *  R  M  D  T  S  V  T  N  G  H  C  P  F  *  I  T  H  A  L  G  V  G  S  K  *  R  K  P  R  *  R  K  R  D  P  H  I  W  N  *  R  K  S  C  I  G  G  C  *  R  S  N  R  L  A  D  Q  H  S  Q  *  R  S  D  R  V  Q  V  V  T  *  W  *  H  G  A  T  *  L  *  R  *  I  R  L  A  E  F  Q  L  S  H  *  Y  F  T  S  E  P  N  S  Q  I  V  R  P  E  *  A  C  E  S  G  F  G  E  K  K  C  E  R  A  L  *  L  G  G  A  A  K  I  V  C  Y  L  Q  *  D  *  V  R  R  G  I  S  L  V  R  F  W  K  Q  Y  V  G  I  R  E  I  K  *  W  K  P  K  I  E  I  G  L  *  I  G  K  I  N  K  K  K  F  T  C  D  G  I  Y  *  I  *  H  N  I  N  I  S  *  T  *  N  *  W  K  F  K  G  L  H  F  C  *  R  *  R  G  R  *  I  S  L  E  G  N  L  S  N  A  I  I  *  M  F  F  L  K  K  I  K  N  K  K  R  N  F  I  R  *  R  I  L  F  P  V  K  *  V  E  K  M  S  G  S  T  A  I  I  F  L  F  F  F  W  L  K  G  V  F  Y  Y  N  F  Y  I  F  F  S  V  K  G  C  I  *  L  C  F  L  L  F  K  M  L  *  Q  M  *  R  V  Y  F  I  M  F  S  T  I  *  Y  A  M  P  N  R  Y  I  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19983" stop="19078"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>903</number_coding_nucleotides>
                  <number_encoded_amino_acids>301</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKLNMSPSWPTTLLASLFLFSQIFSCIAQVPLENTFKFVNEGELGPYVVEYQADYRVLSVFSNPFQLCFYNTTPNAWTLALRMGTVRSESLMRWVWEANRGNPVKENATLTFGTNGNLVLADADGRIAWQTNTANKGVTGFKLLPNGNMVLHDSKGKFVWQSFNYPTDTLLVSQTLRLSGPNKLVSRASVKKNANGPYSLVVQPKLFAIYNRTKLGVELAWFDFGNSMLESVKLNNGNQRLKLDYRLAKSTKRSSHVMAFTKYNTTLTYLRLEIDGNLKAYTFVRDEEADEFRWKVTYQML*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="24914" PGL_stop="25726"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24914" e_stop="25726"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="24914" e_stop="25726" e_length="813"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24914" stop="25573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24914" stop="25363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24919" stop="25239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24947" stop="25726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24950" stop="25417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288437" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAATATTTCAATACAAAAATAATTATATATATATATATATCAAAATAATACACTCTCTTAATTCAACCAAAACATAATATTTTTTTTCAAAAGTGGAATAAAGAAAAATAATTAACATTAAATAGGAGTTACCACTCATTTATTGGACTACTAGCTGCATGTGGACCCACTTATTGTACTGCACACTTATCCTTTATCTTATAGATTTACGTTCACAGCACGATAATATAATTCGTGAAAAAGAATAGTGTGTATGTAGATTTATACGTTTCGTTTATGAAACGTTTTAAATCCTACTGTAAGTTACTTTCCAACGGAATTCATCTGCTTCTTCATCTCTAACGAAAGTATAGGCCTTTAAATTTCCATCAATTTCAAGTCTAAGATATGTCAATGTTGTGTTGTATTTAGTAAATGCCATCACATGTGAACTTCTTTGTGTTGATTTTGCAAATCTATAATCCAATTTCAATCTTTGATTCCCACTATTTAATTTTATCGATTCCAATGTGTTATTTCCATAATCGAACCAAGCTAATTCCACGTCAACCTTGTTTCCCTTGTAGACTGCAAACAATCTCGGCTGCACCACCAAGCTATAAGGCCCGTTCGCATTCTTTTTCACCGAGGCCCGGCTCACAAGCTTATTCGGGCCGGACAATCTGAGAGTTTGGCCCACTAGTAAAGTGTCAGTGGGATAGTTGAAACTCTGCCAGACGAATTTACCTTTTTTGTCATGTAGCACCATGTTACCGTTAGGTAACAACTTGAACCCTGTCACCCCCTTATTGGCCGTGTTGCTCTGCCAAGCG</gDNA_template>
            <first_frame> *  I  F  Q  Y  K  N  N  Y  I  Y  I  Y  I  K  I  I  H  S  L  N  S  T  K  T  *  Y  F  F  S  K  V  E  *  R  K  I  I  N  I  K  *  E  L  P  L  I  Y  W  T  T  S  C  M  W  T  H  L  L  Y  C  T  L  I  L  Y  L  I  D  L  R  S  Q  H  D  N  I  I  R  E  K  E  *  C  V  C  R  F  I  R  F  V  Y  E  T  F  *  I  L  L  *  V  T  F  Q  R  N  S  S  A  S  S  S  L  T  K  V  *  A  F  K  F  P  S  I  S  S  L  R  Y  V  N  V  V  L  Y  L  V  N  A  I  T  C  E  L  L  C  V  D  F  A  N  L  *  S  N  F  N  L  *  F  P  L  F  N  F  I  D  S  N  V  L  F  P  *  S  N  Q  A  N  S  T  S  T  L  F  P  L  *  T  A  N  N  L  G  C  T  T  K  L  *  G  P  F  A  F  F  F  T  E  A  R  L  T  S  L  F  G  P  D  N  L  R  V  W  P  T  S  K  V  S  V  G  *  L  K  L  C  Q  T  N  L  P  F  L  S  C  S  T  M  L  P  L  G  N  N  L  N  P  V  T  P  L  L  A  V  L  L  C  Q  A </first_frame>
            <second_frame>  K  Y  F  N  T  K  I  I  I  Y  I  Y  I  S  K  *  Y  T  L  L  I  Q  P  K  H  N  I  F  F  Q  K  W  N  K  E  K  *  L  T  L  N  R  S  Y  H  S  F  I  G  L  L  A  A  C  G  P  T  Y  C  T  A  H  L  S  F  I  L  *  I  Y  V  H  S  T  I  I  *  F  V  K  K  N  S  V  Y  V  D  L  Y  V  S  F  M  K  R  F  K  S  Y  C  K  L  L  S  N  G  I  H  L  L  L  H  L  *  R  K  Y  R  P  L  N  F  H  Q  F  Q  V  *  D  M  S  M  L  C  C  I  *  *  M  P  S  H  V  N  F  F  V  L  I  L  Q  I  Y  N  P  I  S  I  F  D  S  H  Y  L  I  L  S  I  P  M  C  Y  F  H  N  R  T  K  L  I  P  R  Q  P  C  F  P  C  R  L  Q  T  I  S  A  A  P  P  S  Y  K  A  R  S  H  S  F  S  P  R  P  G  S  Q  A  Y  S  G  R  T  I  *  E  F  G  P  L  V  K  C  Q  W  D  S  *  N  S  A  R  R  I  Y  L  F  C  H  V  A  P  C  Y  R  *  V  T  T  *  T  L  S  P  P  Y  W  P  C  C  S  A  K   </second_frame>
            <third_frame>   N  I  S  I  Q  K  *  L  Y  I  Y  I  Y  Q  N  N  T  L  S  *  F  N  Q  N  I  I  F  F  F  K  S  G  I  K  K  N  N  *  H  *  I  G  V  T  T  H  L  L  D  Y  *  L  H  V  D  P  L  I  V  L  H  T  Y  P  L  S  Y  R  F  T  F  T  A  R  *  Y  N  S  *  K  R  I  V  C  M  *  I  Y  T  F  R  L  *  N  V  L  N  P  T  V  S  Y  F  P  T  E  F  I  C  F  F  I  S  N  E  S  I  G  L  *  I  S  I  N  F  K  S  K  I  C  Q  C  C  V  V  F  S  K  C  H  H  M  *  T  S  L  C  *  F  C  K  S  I  I  Q  F  Q  S  L  I  P  T  I  *  F  Y  R  F  Q  C  V  I  S  I  I  E  P  S  *  F  H  V  N  L  V  S  L  V  D  C  K  Q  S  R  L  H  H  Q  A  I  R  P  V  R  I  L  F  H  R  G  P  A  H  K  L  I  R  A  G  Q  S  E  S  L  A  H  *  *  S  V  S  G  I  V  E  T  L  P  D  E  F  T  F  F  V  M  *  H  H  V  T  V  R  *  Q  L  E  P  C  H  P  L  I  G  R  V  A  L  P  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25329" stop="25580"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MPSHVNFFVLILQIYNPISIFDSHYLILSIPMCYFHNRTKLIPRQPCFPCRLQTISAAPPSYKARSHSFSPRPGSQAYSGRTI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="26118" PGL_stop="24926"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26118" e_stop="24926"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="26118" e_stop="24926" e_length="1193"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26118" stop="24968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26117" stop="25316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26117" stop="25579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26107" stop="25500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26106" stop="25322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26105" stop="25373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26105" stop="25476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26105" stop="25479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26105" stop="25513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26105" stop="25579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26105" stop="25596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26105" stop="25628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26105" stop="25644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26105" stop="25645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26105" stop="25736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26105" stop="25754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26102" stop="25359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26102" stop="25579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26102" stop="25748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26100" stop="25356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26100" stop="25359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26100" stop="25362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26100" stop="25403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26100" stop="25413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26100" stop="25505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26100" stop="25507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26100" stop="25507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26100" stop="25577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26100" stop="25590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26100" stop="25590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26100" stop="25628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26100" stop="25735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26100" stop="25736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26100" stop="25815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26100" stop="25889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26100" stop="25889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26099" stop="25391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26098" stop="25592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26097" stop="25412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26096" stop="25507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26096" stop="25550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26096" stop="25643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26096" stop="25710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26096" stop="25799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26094" stop="25592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26094" stop="25634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26094" stop="25710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26094" stop="25719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26093" stop="25548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26093" stop="25577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26093" stop="25591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26092" stop="25565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26092" stop="25652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26091" stop="25853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26089" stop="25454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26078" stop="25486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26078" stop="25581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26074" stop="25580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26073" stop="25577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26070" stop="25297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26036" stop="25273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26012" stop="25411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26012" stop="25573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25969" stop="25372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25941" stop="25513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25904" stop="25165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25904" stop="25413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25845" stop="25247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25818" stop="25152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25813" stop="25116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25738" stop="24980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25713" stop="25258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25669" stop="24995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25639" stop="25200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25639" stop="25248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25620" stop="24955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25620" stop="24983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25594" stop="24926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212716" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25590" stop="24977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540390" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25509" stop="25069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25453" stop="25008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237284" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25418" stop="25009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237377" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCAAATCAAACAACAAATTAAACATGACTACTTCATGGCCTACTACACTTCTTGCTTCTCTATTTCTTTTCTCCCAAATATTTTCTTGCATTGCCCTAGTTCCACTTGAAAACACCTTTGAATTCGTCAACGAAGGCGAATTAGGACCTTATATCGTAGAATATCAAGCAGATTATCGTGTTCTTAGTGTTTTCAATAATCCGTTCCAGCTCTGTTTCTACAACACAACTCCTAATGCGTGGACATTAGCGTTGCGAATGGGCACTGTTCGTTCTGAATCACTCATGCGTTGGGTGTGGGAAGCAAACAGGGGAAACCCCGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGAATCGCTTGGCAGAGCAACACGGCCAATAAGGGGGTGACAGGGTTCAAGTTGTTACCTAACGGTAACATGGTGCTACATGACAAAAAAGGTAAATTCGTCTGGCAGAGTTTCAACTATCCCACTGACACTTTACTAGTGGGCCAAACTCTCAGATTGTCCGGCCCGAATAAGCTTGTGAGCCGGGCCTCGGTGAAAAAGAATGCGAACGGGCCTTATAGCTTGGTGGTGCAGCCGAGATTGTTTGCAGTCTACAAGGGAAACAAGGTTGACGTGGAATTAGCTTGGTTCGATTATGGAAATAACACATTGGAATCGATAAAATTAAATAGTGGGAATCAAAGATTGAAATTGGATTATAGATTTGCAAAATCAACACAAAGAAGTTCACATGTGATGGCATTTACTAAATACAACACAACATTGACATATCTTAGACTTGAAATTGATGGAAATTTAAAGGCCTATACTTTCGTTAGAGATGAAGAAGCAGATGAATTCCGTTGGAAAGTAACTTACAGTAGGATTTAAAACGTTTCATAAACGAAACGTATAAATCTACATACACACTATTCTTTTTCACGAATTATATTATCGTGCTGTGAACGTAAATCTATAAGATAAAGGATAAGTGTGCAGTACAATAAGTGGGTCCACATGCAGCTAGTAGTCCAATAAATGAGTGGTAACTCCTATTTAATGTTAATTATTTTTCTTTATTCCACTTTTGAAAAAAAATATTATGTTTTGGTTGAATTAAGAGAGTGTATTATTTTGATATATATATATATATAATTATTTTTGTA</gDNA_template>
            <first_frame> I  K  S  N  N  K  L  N  M  T  T  S  W  P  T  T  L  L  A  S  L  F  L  F  S  Q  I  F  S  C  I  A  L  V  P  L  E  N  T  F  E  F  V  N  E  G  E  L  G  P  Y  I  V  E  Y  Q  A  D  Y  R  V  L  S  V  F  N  N  P  F  Q  L  C  F  Y  N  T  T  P  N  A  W  T  L  A  L  R  M  G  T  V  R  S  E  S  L  M  R  W  V  W  E  A  N  R  G  N  P  V  K  E  N  A  T  F  T  F  G  T  N  G  N  L  V  L  A  D  A  D  G  R  I  A  W  Q  S  N  T  A  N  K  G  V  T  G  F  K  L  L  P  N  G  N  M  V  L  H  D  K  K  G  K  F  V  W  Q  S  F  N  Y  P  T  D  T  L  L  V  G  Q  T  L  R  L  S  G  P  N  K  L  V  S  R  A  S  V  K  K  N  A  N  G  P  Y  S  L  V  V  Q  P  R  L  F  A  V  Y  K  G  N  K  V  D  V  E  L  A  W  F  D  Y  G  N  N  T  L  E  S  I  K  L  N  S  G  N  Q  R  L  K  L  D  Y  R  F  A  K  S  T  Q  R  S  S  H  V  M  A  F  T  K  Y  N  T  T  L  T  Y  L  R  L  E  I  D  G  N  L  K  A  Y  T  F  V  R  D  E  E  A  D  E  F  R  W  K  V  T  Y  S  R  I  *  N  V  S  *  T  K  R  I  N  L  H  T  H  Y  S  F  S  R  I  I  L  S  C  C  E  R  K  S  I  R  *  R  I  S  V  Q  Y  N  K  W  V  H  M  Q  L  V  V  Q  *  M  S  G  N  S  Y  L  M  L  I  I  F  L  Y  S  T  F  E  K  K  Y  Y  V  L  V  E  L  R  E  C  I  I  L  I  Y  I  Y  I  *  L  F  L   </first_frame>
            <second_frame>  S  N  Q  T  T  N  *  T  *  L  L  H  G  L  L  H  F  L  L  L  Y  F  F  S  P  K  Y  F  L  A  L  P  *  F  H  L  K  T  P  L  N  S  S  T  K  A  N  *  D  L  I  S  *  N  I  K  Q  I  I  V  F  L  V  F  S  I  I  R  S  S  S  V  S  T  T  Q  L  L  M  R  G  H  *  R  C  E  W  A  L  F  V  L  N  H  S  C  V  G  C  G  K  Q  T  G  E  T  P  L  K  K  T  R  H  S  R  L  E  L  T  E  I  S  Y  W  P  M  L  T  V  E  S  L  G  R  A  T  R  P  I  R  G  *  Q  G  S  S  C  Y  L  T  V  T  W  C  Y  M  T  K  K  V  N  S  S  G  R  V  S  T  I  P  L  T  L  Y  *  W  A  K  L  S  D  C  P  A  R  I  S  L  *  A  G  P  R  *  K  R  M  R  T  G  L  I  A  W  W  C  S  R  D  C  L  Q  S  T  R  E  T  R  L  T  W  N  *  L  G  S  I  M  E  I  T  H  W  N  R  *  N  *  I  V  G  I  K  D  *  N  W  I  I  D  L  Q  N  Q  H  K  E  V  H  M  *  W  H  L  L  N  T  T  Q  H  *  H  I  L  D  L  K  L  M  E  I  *  R  P  I  L  S  L  E  M  K  K  Q  M  N  S  V  G  K  *  L  T  V  G  F  K  T  F  H  K  R  N  V  *  I  Y  I  H  T  I  L  F  H  E  L  Y  Y  R  A  V  N  V  N  L  *  D  K  G  *  V  C  S  T  I  S  G  S  T  C  S  *  *  S  N  K  *  V  V  T  P  I  *  C  *  L  F  F  F  I  P  L  L  K  K  N  I  M  F  W  L  N  *  E  S  V  L  F  *  Y  I  Y  I  Y  N  Y  F  C  </second_frame>
            <third_frame>   Q  I  K  Q  Q  I  K  H  D  Y  F  M  A  Y  Y  T  S  C  F  S  I  S  F  L  P  N  I  F  L  H  C  P  S  S  T  *  K  H  L  *  I  R  Q  R  R  R  I  R  T  L  Y  R  R  I  S  S  R  L  S  C  S  *  C  F  Q  *  S  V  P  A  L  F  L  Q  H  N  S  *  C  V  D  I  S  V  A  N  G  H  C  S  F  *  I  T  H  A  L  G  V  G  S  K  Q  G  K  P  R  *  R  K  R  D  I  H  V  W  N  *  R  K  S  R  I  G  R  C  *  R  S  N  R  L  A  E  Q  H  G  Q  *  G  G  D  R  V  Q  V  V  T  *  R  *  H  G  A  T  *  Q  K  R  *  I  R  L  A  E  F  Q  L  S  H  *  H  F  T  S  G  P  N  S  Q  I  V  R  P  E  *  A  C  E  P  G  L  G  E  K  E  C  E  R  A  L  *  L  G  G  A  A  E  I  V  C  S  L  Q  G  K  Q  G  *  R  G  I  S  L  V  R  L  W  K  *  H  I  G  I  D  K  I  K  *  W  E  S  K  I  E  I  G  L  *  I  C  K  I  N  T  K  K  F  T  C  D  G  I  Y  *  I  Q  H  N  I  D  I  S  *  T  *  N  *  W  K  F  K  G  L  Y  F  R  *  R  *  R  S  R  *  I  P  L  E  S  N  L  Q  *  D  L  K  R  F  I  N  E  T  Y  K  S  T  Y  T  L  F  F  F  T  N  Y  I  I  V  L  *  T  *  I  Y  K  I  K  D  K  C  A  V  Q  *  V  G  P  H  A  A  S  S  P  I  N  E  W  *  L  L  F  N  V  N  Y  F  S  L  F  H  F  *  K  K  I  L  C  F  G  *  I  K  R  V  Y  Y  F  D  I  Y  I  Y  I  I  I  F  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26118" stop="25201"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>915</number_coding_nucleotides>
                  <number_encoded_amino_acids>305</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKSNNKLNMTTSWPTTLLASLFLFSQIFSCIALVPLENTFEFVNEGELGPYIVEYQADYRVLSVFNNPFQLCFYNTTPNAWTLALRMGTVRSESLMRWVWEANRGNPVKENATFTFGTNGNLVLADADGRIAWQSNTANKGVTGFKLLPNGNMVLHDKKGKFVWQSFNYPTDTLLVGQTLRLSGPNKLVSRASVKKNANGPYSLVVQPRLFAVYKGNKVDVELAWFDYGNNTLESIKLNSGNQRLKLDYRFAKSTQRSSHVMAFTKYNTTLTYLRLEIDGNLKAYTFVRDEEADEFRWKVTYSRI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="30394" PGL_stop="28234"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30394" e_stop="29681"/>
            <exon e_start="29441" e_stop="29289"/>
            <exon e_start="29198" e_stop="29112"/>
            <exon e_start="28338" e_stop="28234"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="0.978"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="0.993"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="30394" e_stop="29681" e_length="714"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="29680" i_stop="29442" i_length="239"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="29441" e_stop="29289" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="29288" i_stop="29199" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29198" e_stop="29112" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29111" i_stop="28339" i_length="773"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="28338" e_stop="28234" e_length="105"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30394" stop="29988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30394" stop="30026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30348" stop="29915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30024" stop="29681"/>
              <exon start="29441" stop="29289"/>
              <exon start="29198" stop="29112"/>
              <exon start="28338" stop="28234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29930" stop="29681"/>
              <exon start="29441" stop="29289"/>
              <exon start="29198" stop="29133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217171" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACATTTCATAAAACCCTTCAAATTCTACATCGCCCAAGAAGAAATTTTAGGAAGCAAAAATGGCCTGGAAAACGGATACTGACCTCGAAAATTCCGACCCAATTTCAGAATCCGGCGATGTTGAGTGGCCTTGTAAACCCGTCGTTGAATCGTCAGGCTGGCCTACTAGCTGGCAAAACGACAGTAACAAATCAAAGCTACAAACCCCTTTACCTACCGCCGAAGACGAAGCTGCGAACAACAGTCAACTTCCGGCATTGCTCAAAGTTGCTGAATATTTGAACTCCACACTCAGTCTCGACGACGATGACGAGTTTTCTGAGTATATAGGTGAAAATGGGGATTATTTCATCAATGACGATGAGGGTTTTCTGGATGGGGAAGAGGGGTTTCAGGACTATGATTTTTTTGTGAAGTTGTTCAAGCAGGATGATGGGTTAAGAGAGTACTATGAGAAGAATCGTGAGAATGGGGTGTTTTGTTGTCTTGTTTGTTGTGGGGTTCGTGAGAAAGGGTGGAAGAGGTTTAAGGATTGTTCGTCTCTTGTTCAGCATTCCATAAGCATTGCGAAAACCTCTAAGAGACGAGCTCATCGGGCTTACTGTAAGGTCGTCTGTGAAATTCTTGGCTGGGATGTTGATAGCCTGCCTTCCATTGTCCTCTCTACAGGTGTTAAGCTCGGTGAATCTTCTGATAAACCAGTTAAGGCTCAG : GGCAATGTCGATGATGGTGGTGATGACAGTTTGAGTGGTCAATGCAAATCCACAAGTTCTGTTAGTGTCAGTGAGACTGAAGTGTCTCTGTCGAAATTGTCTTTGATTGATGAAAGGCAACCAGGAAAAGATTGTTGCTCTGCAGAATTAGAG : GACTCTCTAAGTGGAGCCACTGTTGATAGAAGCTTGGGCGATCTCGGCAAAGGTACTTCTGACACAATGAAAGAGAATGCTGAGGGG : GAGAATTCTGTGAGCAAAGCTGGTGTTGATGGACTCTTGGAAGATCTCAGCCTTCTTACTCTTGAAACACAAAAATTGAATGGAAAGGGTGCATCTGATCGTGTG</gDNA_template>
            <first_frame> N  I  S  *  N  P  S  N  S  T  S  P  K  K  K  F  *  E  A  K  M  A  W  K  T  D  T  D  L  E  N  S  D  P  I  S  E  S  G  D  V  E  W  P  C  K  P  V  V  E  S  S  G  W  P  T  S  W  Q  N  D  S  N  K  S  K  L  Q  T  P  L  P  T  A  E  D  E  A  A  N  N  S  Q  L  P  A  L  L  K  V  A  E  Y  L  N  S  T  L  S  L  D  D  D  D  E  F  S  E  Y  I  G  E  N  G  D  Y  F  I  N  D  D  E  G  F  L  D  G  E  E  G  F  Q  D  Y  D  F  F  V  K  L  F  K  Q  D  D  G  L  R  E  Y  Y  E  K  N  R  E  N  G  V  F  C  C  L  V  C  C  G  V  R  E  K  G  W  K  R  F  K  D  C  S  S  L  V  Q  H  S  I  S  I  A  K  T  S  K  R  R  A  H  R  A  Y  C  K  V  V  C  E  I  L  G  W  D  V  D  S  L  P  S  I  V  L  S  T  G  V  K  L  G  E  S  S  D  K  P  V  K  A  Q  :  G  N  V  D  D  G  G  D  D  S  L  S  G  Q  C  K  S  T  S  S  V  S  V  S  E  T  E  V  S  L  S  K  L  S  L  I  D  E  R  Q  P  G  K  D  C  C  S  A  E  L  E  :  D  S  L  S  G  A  T  V  D  R  S  L  G  D  L  G  K  G  T  S  D  T  M  K  E  N  A  E  G  :  E  N  S  V  S  K  A  G  V  D  G  L  L  E  D  L  S  L  L  T  L  E  T  Q  K  L  N  G  K  G  A  S  D  R  V </first_frame>
            <second_frame>  T  F  H  K  T  L  Q  I  L  H  R  P  R  R  N  F  R  K  Q  K  W  P  G  K  R  I  L  T  S  K  I  P  T  Q  F  Q  N  P  A  M  L  S  G  L  V  N  P  S  L  N  R  Q  A  G  L  L  A  G  K  T  T  V  T  N  Q  S  Y  K  P  L  Y  L  P  P  K  T  K  L  R  T  T  V  N  F  R  H  C  S  K  L  L  N  I  *  T  P  H  S  V  S  T  T  M  T  S  F  L  S  I  *  V  K  M  G  I  I  S  S  M  T  M  R  V  F  W  M  G  K  R  G  F  R  T  M  I  F  L  *  S  C  S  S  R  M  M  G  *  E  S  T  M  R  R  I  V  R  M  G  C  F  V  V  L  F  V  V  G  F  V  R  K  G  G  R  G  L  R  I  V  R  L  L  F  S  I  P  *  A  L  R  K  P  L  R  D  E  L  I  G  L  T  V  R  S  S  V  K  F  L  A  G  M  L  I  A  C  L  P  L  S  S  L  Q  V  L  S  S  V  N  L  L  I  N  Q  L  R  L  R :   A  M  S  M  M  V  V  M  T  V  *  V  V  N  A  N  P  Q  V  L  L  V  S  V  R  L  K  C  L  C  R  N  C  L  *  L  M  K  G  N  Q  E  K  I  V  A  L  Q  N  *  R :   T  L  *  V  E  P  L  L  I  E  A  W  A  I  S  A  K  V  L  L  T  Q  *  K  R  M  L  R  G :   R  I  L  *  A  K  L  V  L  M  D  S  W  K  I  S  A  F  L  L  L  K  H  K  N  *  M  E  R  V  H  L  I  V   </second_frame>
            <third_frame>   H  F  I  K  P  F  K  F  Y  I  A  Q  E  E  I  L  G  S  K  N  G  L  E  N  G  Y  *  P  R  K  F  R  P  N  F  R  I  R  R  C  *  V  A  L  *  T  R  R  *  I  V  R  L  A  Y  *  L  A  K  R  Q  *  Q  I  K  A  T  N  P  F  T  Y  R  R  R  R  S  C  E  Q  Q  S  T  S  G  I  A  Q  S  C  *  I  F  E  L  H  T  Q  S  R  R  R  *  R  V  F  *  V  Y  R  *  K  W  G  L  F  H  Q  *  R  *  G  F  S  G  W  G  R  G  V  S  G  L  *  F  F  C  E  V  V  Q  A  G  *  W  V  K  R  V  L  *  E  E  S  *  E  W  G  V  L  L  S  C  L  L  W  G  S  *  E  R  V  E  E  V  *  G  L  F  V  S  C  S  A  F  H  K  H  C  E  N  L  *  E  T  S  S  S  G  L  L  *  G  R  L  *  N  S  W  L  G  C  *  *  P  A  F  H  C  P  L  Y  R  C  *  A  R  *  I  F  *  *  T  S  *  G  S   : G  Q  C  R  *  W  W  *  *  Q  F  E  W  S  M  Q  I  H  K  F  C  *  C  Q  *  D  *  S  V  S  V  E  I  V  F  D  *  *  K  A  T  R  K  R  L  L  L  C  R  I  R   : G  L  S  K  W  S  H  C  *  *  K  L  G  R  S  R  Q  R  Y  F  *  H  N  E  R  E  C  *  G   : G  E  F  C  E  Q  S  W  C  *  W  T  L  G  R  S  Q  P  S  Y  S  *  N  T  K  I  E  W  K  G  C  I  *  S  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30343" stop="29681"/>
                    <exon start="29441" stop="29289"/>
                    <exon start="29198" stop="29112"/>
                    <exon start="28338" stop="28234"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1008</number_coding_nucleotides>
                  <number_encoded_amino_acids>336</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAKMAWKTDTDLENSDPISESGDVEWPCKPVVESSGWPTSWQNDSNKSKLQTPLPTAEDEAANNSQLPALLKVAEYLNSTLSLDDDDEFSEYIGENGDYFINDDEGFLDGEEGFQDYDFFVKLFKQDDGLREYYEKNRENGVFCCLVCCGVREKGWKRFKDCSSLVQHSISIAKTSKRRAHRAYCKVVCEILGWDVDSLPSIVLSTGVKLGESSDKPVKAQGNVDDGGDDSLSGQCKSTSSVSVSETEVSLSKLSLIDERQPGKDCCSAELEDSLSGATVDRSLGDLGKGTSDTMKENAEGENSVSKAGVDGLLEDLSLLTLETQKLNGKGASDRV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="38093" PGL_stop="34180"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38093" e_stop="37789"/>
            <exon e_start="36817" e_stop="36600"/>
            <exon e_start="36062" e_stop="35818"/>
            <exon e_start="35543" e_stop="35156"/>
            <exon e_start="34975" e_stop="34483"/>
            <exon e_start="34189" e_stop="34180"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.916" acc_prob="0.793" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.859" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.851" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.990"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38093" e_stop="37789" e_length="305"/>
          </exon>
          <intron i_serial="1" don_prob="0.916" acc_prob="0.793">
            <gDNA_intron_boundary i_start="37788" i_stop="36818" i_length="971"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36817" e_stop="36600" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.859">
            <gDNA_intron_boundary i_start="36599" i_stop="36063" i_length="537"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36062" e_stop="35818" e_length="245"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.851">
            <gDNA_intron_boundary i_start="35817" i_stop="35544" i_length="274"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35543" e_stop="35156" e_length="388"/>
          </exon>
          <intron i_serial="4" don_prob="0.904" acc_prob="0.000">
            <gDNA_intron_boundary i_start="35155" i_stop="34976" i_length="180"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="34975" e_stop="34483" e_length="493"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="34482" i_stop="34190" i_length="293"/>
          </intron>
          <exon e_serial="6" e_score="0.571">
            <gDNA_exon_boundary e_start="34189" e_stop="34180" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38093" stop="37789"/>
              <exon start="36817" stop="36600"/>
              <exon start="36062" stop="35931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38093" stop="37789"/>
              <exon start="36817" stop="36600"/>
              <exon start="36062" stop="35945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38074" stop="37789"/>
              <exon start="36817" stop="36600"/>
              <exon start="36062" stop="35905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38071" stop="37789"/>
              <exon start="36817" stop="36600"/>
              <exon start="36062" stop="35911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36739" stop="36600"/>
              <exon start="36062" stop="35818"/>
              <exon start="35543" stop="35491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36739" stop="36600"/>
              <exon start="36062" stop="35831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35920" stop="35818"/>
              <exon start="35543" stop="35156"/>
              <exon start="34975" stop="34792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34899" stop="34483"/>
              <exon start="34189" stop="34183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228679" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34861" stop="34483"/>
              <exon start="34189" stop="34180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229159" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACACAAATTCAACTCAAACAAAATGGACGAAATTCAAATATTAGTAAGAGTGTGTTGTTCTGCCATAGCAATTGCTCTGTTTGTGTGTCTGTGGAAAGTACTAAATTGGGTTTGGCTCAATCCGAAGAAGTTGGAGAATTTGTTGAGGAAACAAGGGCTAAATGGGAACTCTTACAAAATATTGTATGGGGATTTGAATGATTTTATTGGAATGATTAGGGAAGCTAGTTCAAAACCTATGAATTTGTCTGATGATATAGCTCCAAGATTGGTGCCTTTCTTTCTTGAGACCACCAAGAAATATG : GGAAAAAATGTTTTATATGGTTGGGTCCAAAACCACAAGTAATAATCATGGACCCTGAGCTTATTAAGGAAGTACTCTCGAAAACCTATTTGTATCAAAAGCCCGGTGGAAATCCATTTGCAGCATTATTGGTACAAGGACTAGCAACCTATGAAGAAGATAAATGGGCCAAACATAGAAAAATTATCAATCCCGCTTTCCATCTAGAGAAGCTTAAG : CATATGCTCCCAGCTTTTCACTTGAGCTGTACTGAAATGCTGAGCAAATGGGAAGATGCTGTTCCACTTGGCAGCTCTCGTGAGATAGATGTATGGCCTCACCTTCAGCAATTAACTTGTGATGTAATCTCTCGGACAGCTTTTGGAAGTAGTTATGAAGAAGGTAGAAAGATTTTTGAACTTCAAACGGAACAAGCTCAGAATTTTATCGACGCTGTACGTGAAGTTTATATCCCAGGGCGGAG : ATTTTTGCCAACAAAGAGGAACAGAAGAATGAAGGAAATAAAAAACGAAGTTCGGACCTCAGTTAAAGGTATTATCGATAAAAGAATGAAGGCAATGAAAGCAGGGAATGCCGATAATAATGAGGATCTGTTAGGCATATTGCTTGAATCAAATTTCAAAGAAATTGAACAGCACGGTAACAAGGATTTTGGAATGAGCATCGAAGAAGTCATCGAAGAATGCAAGTTATTCTATTTTGCTGGCCAAGAAACTACATCAGTCTTACTCGTGTGGACTCTGGTGTTGTTGAGTCGGTATCAAGATTGGCAGACACAGGCCAGAGAAGAAGTCTTGCAAGTGTTTGAGAGTCGGAAACCAGATTTTGATGGATTAAATCATCTAAAAGTT : GTAACAATGATCTTGTACGAGTCATTACGGCTATATCCCCCATTGATAACACTTAATCGACAGGTTAACGAAGACATAGTATTAGGAGAATTGTGTCTACCAGCTGGTGTACTAGTCTCATTGCCAATGATCTTATGNCATCATGATAAAGATATATGGGGTGAAGATGCAACGAGTTTCAATCCAGAGAGATTTAGAGAAGGAATATCAAGTGCAACAAAAGGTAAAGTTACATATTTTCCATTTTCATGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATGTTAGAAGCAAAGATGGCTTTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCTTACACACATGCTCCTAAATCCTTAGTAACCATGCAGCCTCAGTATGGTGCTCCACTTATTTTGCACAAACTTTAGTTTTGTAATGTAATGTAACAAGAATTAATATAAAGACTCAAATAAGGGGTGGAGTTTGCAATATTAA : ACAAAGGGAC</gDNA_template>
            <first_frame> T  Q  I  Q  L  K  Q  N  G  R  N  S  N  I  S  K  S  V  L  F  C  H  S  N  C  S  V  C  V  S  V  E  S  T  K  L  G  L  A  Q  S  E  E  V  G  E  F  V  E  E  T  R  A  K  W  E  L  L  Q  N  I  V  W  G  F  E  *  F  Y  W  N  D  *  G  S  *  F  K  T  Y  E  F  V  *  *  Y  S  S  K  I  G  A  F  L  S  *  D  H  Q  E  I  W :   E  K  M  F  Y  M  V  G  S  K  T  T  S  N  N  H  G  P  *  A  Y  *  G  S  T  L  E  N  L  F  V  S  K  A  R  W  K  S  I  C  S  I  I  G  T  R  T  S  N  L  *  R  R  *  M  G  Q  T  *  K  N  Y  Q  S  R  F  P  S  R  E  A  *   : A  Y  A  P  S  F  S  L  E  L  Y  *  N  A  E  Q  M  G  R  C  C  S  T  W  Q  L  S  *  D  R  C  M  A  S  P  S  A  I  N  L  *  C  N  L  S  D  S  F  W  K  *  L  *  R  R  *  K  D  F  *  T  S  N  G  T  S  S  E  F  Y  R  R  C  T  *  S  L  Y  P  R  A  E  :  I  F  A  N  K  E  E  Q  K  N  E  G  N  K  K  R  S  S  D  L  S  *  R  Y  Y  R  *  K  N  E  G  N  E  S  R  E  C  R  *  *  *  G  S  V  R  H  I  A  *  I  K  F  Q  R  N  *  T  A  R  *  Q  G  F  W  N  E  H  R  R  S  H  R  R  M  Q  V  I  L  F  C  W  P  R  N  Y  I  S  L  T  R  V  D  S  G  V  V  E  S  V  S  R  L  A  D  T  G  Q  R  R  S  L  A  S  V  *  E  S  E  T  R  F  *  W  I  K  S  S  K  S   : C  N  N  D  L  V  R  V  I  T  A  I  S  P  I  D  N  T  *  S  T  G  *  R  R  H  S  I  R  R  I  V  S  T  S  W  C  T  S  L  I  A  N  D  L  M  S  S  *  *  R  Y  M  G  *  R  C  N  E  F  Q  S  R  E  I  *  R  R  N  I  K  C  N  K  R  *  S  Y  I  F  S  I  F  M  G  S  K  N  M  H  W  T  K  F  C  H  V  R  S  K  D  G  F  V  Y  D  P  T  K  L  L  F  *  I  V  S  I  L  H  T  C  S  *  I  L  S  N  H  A  A  S  V  W  C  S  T  Y  F  A  Q  T  L  V  L  *  C  N  V  T  R  I  N  I  K  T  Q  I  R  G  G  V  C  N  I  K :   Q  R  D </first_frame>
            <second_frame>  H  K  F  N  S  N  K  M  D  E  I  Q  I  L  V  R  V  C  C  S  A  I  A  I  A  L  F  V  C  L  W  K  V  L  N  W  V  W  L  N  P  K  K  L  E  N  L  L  R  K  Q  G  L  N  G  N  S  Y  K  I  L  Y  G  D  L  N  D  F  I  G  M  I  R  E  A  S  S  K  P  M  N  L  S  D  D  I  A  P  R  L  V  P  F  F  L  E  T  T  K  K  Y   : G  K  K  C  F  I  W  L  G  P  K  P  Q  V  I  I  M  D  P  E  L  I  K  E  V  L  S  K  T  Y  L  Y  Q  K  P  G  G  N  P  F  A  A  L  L  V  Q  G  L  A  T  Y  E  E  D  K  W  A  K  H  R  K  I  I  N  P  A  F  H  L  E  K  L  K  :  H  M  L  P  A  F  H  L  S  C  T  E  M  L  S  K  W  E  D  A  V  P  L  G  S  S  R  E  I  D  V  W  P  H  L  Q  Q  L  T  C  D  V  I  S  R  T  A  F  G  S  S  Y  E  E  G  R  K  I  F  E  L  Q  T  E  Q  A  Q  N  F  I  D  A  V  R  E  V  Y  I  P  G  R  R :   F  L  P  T  K  R  N  R  R  M  K  E  I  K  N  E  V  R  T  S  V  K  G  I  I  D  K  R  M  K  A  M  K  A  G  N  A  D  N  N  E  D  L  L  G  I  L  L  E  S  N  F  K  E  I  E  Q  H  G  N  K  D  F  G  M  S  I  E  E  V  I  E  E  C  K  L  F  Y  F  A  G  Q  E  T  T  S  V  L  L  V  W  T  L  V  L  L  S  R  Y  Q  D  W  Q  T  Q  A  R  E  E  V  L  Q  V  F  E  S  R  K  P  D  F  D  G  L  N  H  L  K  V  :  V  T  M  I  L  Y  E  S  L  R  L  Y  P  P  L  I  T  L  N  R  Q  V  N  E  D  I  V  L  G  E  L  C  L  P  A  G  V  L  V  S  L  P  M  I  L  C  H  H  D  K  D  I  W  G  E  D  A  T  S  F  N  P  E  R  F  R  E  G  I  S  S  A  T  K  G  K  V  T  Y  F  P  F  S  W  G  P  R  I  C  I  G  Q  N  F  A  M  L  E  A  K  M  A  L  C  M  I  L  Q  S  F  S  F  E  L  S  P  S  Y  T  H  A  P  K  S  L  V  T  M  Q  P  Q  Y  G  A  P  L  I  L  H  K  L  *  F  C  N  V  M  *  Q  E  L  I  *  R  L  K  *  G  V  E  F  A  I  L   : N  K  G   </second_frame>
            <third_frame>   T  N  S  T  Q  T  K  W  T  K  F  K  Y  *  *  E  C  V  V  L  P  *  Q  L  L  C  L  C  V  C  G  K  Y  *  I  G  F  G  S  I  R  R  S  W  R  I  C  *  G  N  K  G  *  M  G  T  L  T  K  Y  C  M  G  I  *  M  I  L  L  E  *  L  G  K  L  V  Q  N  L  *  I  C  L  M  I  *  L  Q  D  W  C  L  S  F  L  R  P  P  R  N  M  :  G  K  N  V  L  Y  G  W  V  Q  N  H  K  *  *  S  W  T  L  S  L  L  R  K  Y  S  R  K  P  I  C  I  K  S  P  V  E  I  H  L  Q  H  Y  W  Y  K  D  *  Q  P  M  K  K  I  N  G  P  N  I  E  K  L  S  I  P  L  S  I  *  R  S  L  S :   I  C  S  Q  L  F  T  *  A  V  L  K  C  *  A  N  G  K  M  L  F  H  L  A  A  L  V  R  *  M  Y  G  L  T  F  S  N  *  L  V  M  *  S  L  G  Q  L  L  E  V  V  M  K  K  V  E  R  F  L  N  F  K  R  N  K  L  R  I  L  S  T  L  Y  V  K  F  I  S  Q  G  G   : D  F  C  Q  Q  R  G  T  E  E  *  R  K  *  K  T  K  F  G  P  Q  L  K  V  L  S  I  K  E  *  R  Q  *  K  Q  G  M  P  I  I  M  R  I  C  *  A  Y  C  L  N  Q  I  S  K  K  L  N  S  T  V  T  R  I  L  E  *  A  S  K  K  S  S  K  N  A  S  Y  S  I  L  L  A  K  K  L  H  Q  S  Y  S  C  G  L  W  C  C  *  V  G  I  K  I  G  R  H  R  P  E  K  K  S  C  K  C  L  R  V  G  N  Q  I  L  M  D  *  I  I  *  K  L :   *  Q  *  S  C  T  S  H  Y  G  Y  I  P  H  *  *  H  L  I  D  R  L  T  K  T  *  Y  *  E  N  C  V  Y  Q  L  V  Y  *  S  H  C  Q  *  S  Y  V  I  M  I  K  I  Y  G  V  K  M  Q  R  V  S  I  Q  R  D  L  E  K  E  Y  Q  V  Q  Q  K  V  K  L  H  I  F  H  F  H  G  V  Q  E  Y  A  L  D  K  I  L  P  C  *  K  Q  R  W  L  C  V  *  S  Y  K  A  S  L  L  N  C  L  H  L  T  H  M  L  L  N  P  *  *  P  C  S  L  S  M  V  L  H  L  F  C  T  N  F  S  F  V  M  *  C  N  K  N  *  Y  K  D  S  N  K  G  W  S  L  Q  Y  *  :  T  K  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38092" stop="37789"/>
                    <exon start="36817" stop="36600"/>
                    <exon start="36062" stop="35818"/>
                    <exon start="35543" stop="35156"/>
                    <exon start="34975" stop="34550"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1578</number_coding_nucleotides>
                  <number_encoded_amino_acids>526</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HKFNSNKMDEIQILVRVCCSAIAIALFVCLWKVLNWVWLNPKKLENLLRKQGLNGNSYKILYGDLNDFIGMIREASSKPMNLSDDIAPRLVPFFLETTKKYGKKCFIWLGPKPQVIIMDPELIKEVLSKTYLYQKPGGNPFAALLVQGLATYEEDKWAKHRKIINPAFHLEKLKHMLPAFHLSCTEMLSKWEDAVPLGSSREIDVWPHLQQLTCDVISRTAFGSSYEEGRKIFELQTEQAQNFIDAVREVYIPGRRFLPTKRNRRMKEIKNEVRTSVKGIIDKRMKAMKAGNADNNEDLLGILLESNFKEIEQHGNKDFGMSIEEVIEECKLFYFAGQETTSVLLVWTLVLLSRYQDWQTQAREEVLQVFESRKPDFDGLNHLKVVTMILYESLRLYPPLITLNRQVNEDIVLGELCLPAGVLVSLPMILCHHDKDIWGEDATSFNPERFREGISSATKGKVTYFPFSWGPRICIGQNFAMLEAKMALCMILQSFSFELSPSYTHAPKSLVTMQPQYGAPLILHKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="38062" e_stop="37789"/>
            <exon e_start="36817" e_stop="36406"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.916" acc_prob="0.793" e_score="0.945"/>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="38062" e_stop="37789" e_length="274"/>
          </exon>
          <intron i_serial="1" don_prob="0.916" acc_prob="0.793">
            <gDNA_intron_boundary i_start="37788" i_stop="36818" i_length="971"/>
          </intron>
          <exon e_serial="2" e_score="0.927">
            <gDNA_exon_boundary e_start="36817" e_stop="36406" e_length="412"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38062" stop="37789"/>
              <exon start="36817" stop="36406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37865" stop="37789"/>
              <exon start="36817" stop="36413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456151" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCAAATATTAGTAAGAGTGTGTTGTTCTGCCATAGCAATTGCTCTGTTTGTGTGTCTGTGGAAAGTACTAAATTGGGTTTGGCTCAATCCGAAGAAGTTGGAGAATTTGTTGAGGAAACAAGGGCTAAATGGGAACTCTTACAAAATATTGTATGGGGATTTGAATGATTTTATTGGAATGATTAGGGAAGCTAGTTCAAAACCTATGAATTTGTCTGATGATATAGCTCCAAGATTGGTGCCTTTCTTTCTTGAGACCACCAAGAAATATG : GGAAAAAATGTTTTATATGGTTGGGTCCAAAACCACAAGTAATAATCATGGACCCTGAGCTTATTAAGGAAGTACTCTCGAAAACCTATTTGTATCAAAAGCCCGGTGGAAATCCATTTGCAGCATTATTGGTACAAGGACTAGCAACCTATGAAGAAGATAAATGGGCCAAACATAGAAAAATTATCAATCCCGCTTTCCATCTAGAGAAGCTTAAGGTTGCTTTTCTTCCGCGCCCTCCTTCAAACTTTGTGATTGGTCAACTAGAAATTATTATGTTTGTACACGACGGATAAAATGCTGGCTCATGCTTCTTTAGCTACTGCTCTCTACAAGTCTTTCTATCCCCTTTAATTCGCTATCCTTATCTTTCTATCTAATGTTTTATGTATTCTGCATATGACTATTGCAA</gDNA_template>
            <first_frame> I  Q  I  L  V  R  V  C  C  S  A  I  A  I  A  L  F  V  C  L  W  K  V  L  N  W  V  W  L  N  P  K  K  L  E  N  L  L  R  K  Q  G  L  N  G  N  S  Y  K  I  L  Y  G  D  L  N  D  F  I  G  M  I  R  E  A  S  S  K  P  M  N  L  S  D  D  I  A  P  R  L  V  P  F  F  L  E  T  T  K  K  Y   : G  K  K  C  F  I  W  L  G  P  K  P  Q  V  I  I  M  D  P  E  L  I  K  E  V  L  S  K  T  Y  L  Y  Q  K  P  G  G  N  P  F  A  A  L  L  V  Q  G  L  A  T  Y  E  E  D  K  W  A  K  H  R  K  I  I  N  P  A  F  H  L  E  K  L  K  V  A  F  L  P  R  P  P  S  N  F  V  I  G  Q  L  E  I  I  M  F  V  H  D  G  *  N  A  G  S  C  F  F  S  Y  C  S  L  Q  V  F  L  S  P  L  I  R  Y  P  Y  L  S  I  *  C  F  M  Y  S  A  Y  D  Y  C   </first_frame>
            <second_frame>  F  K  Y  *  *  E  C  V  V  L  P  *  Q  L  L  C  L  C  V  C  G  K  Y  *  I  G  F  G  S  I  R  R  S  W  R  I  C  *  G  N  K  G  *  M  G  T  L  T  K  Y  C  M  G  I  *  M  I  L  L  E  *  L  G  K  L  V  Q  N  L  *  I  C  L  M  I  *  L  Q  D  W  C  L  S  F  L  R  P  P  R  N  M  :  G  K  N  V  L  Y  G  W  V  Q  N  H  K  *  *  S  W  T  L  S  L  L  R  K  Y  S  R  K  P  I  C  I  K  S  P  V  E  I  H  L  Q  H  Y  W  Y  K  D  *  Q  P  M  K  K  I  N  G  P  N  I  E  K  L  S  I  P  L  S  I  *  R  S  L  R  L  L  F  F  R  A  L  L  Q  T  L  *  L  V  N  *  K  L  L  C  L  Y  T  T  D  K  M  L  A  H  A  S  L  A  T  A  L  Y  K  S  F  Y  P  L  *  F  A  I  L  I  F  L  S  N  V  L  C  I  L  H  M  T  I  A  </second_frame>
            <third_frame>   S  N  I  S  K  S  V  L  F  C  H  S  N  C  S  V  C  V  S  V  E  S  T  K  L  G  L  A  Q  S  E  E  V  G  E  F  V  E  E  T  R  A  K  W  E  L  L  Q  N  I  V  W  G  F  E  *  F  Y  W  N  D  *  G  S  *  F  K  T  Y  E  F  V  *  *  Y  S  S  K  I  G  A  F  L  S  *  D  H  Q  E  I  W :   E  K  M  F  Y  M  V  G  S  K  T  T  S  N  N  H  G  P  *  A  Y  *  G  S  T  L  E  N  L  F  V  S  K  A  R  W  K  S  I  C  S  I  I  G  T  R  T  S  N  L  *  R  R  *  M  G  Q  T  *  K  N  Y  Q  S  R  F  P  S  R  E  A  *  G  C  F  S  S  A  P  S  F  K  L  C  D  W  S  T  R  N  Y  Y  V  C  T  R  R  I  K  C  W  L  M  L  L  *  L  L  L  S  T  S  L  S  I  P  F  N  S  L  S  L  S  F  Y  L  M  F  Y  V  F  C  I  *  L  L  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38062" stop="37789"/>
                    <exon start="36817" stop="36522"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQILVRVCCSAIAIALFVCLWKVLNWVWLNPKKLENLLRKQGLNGNSYKILYGDLNDFIGMIREASSKPMNLSDDIAPRLVPFFLETTKKYGKKCFIWLGPKPQVIIMDPELIKEVLSKTYLYQKPGGNPFAALLVQGLATYEEDKWAKHRKIINPAFHLEKLKVAFLPRPPSNFVIGQLEIIMFVHDG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="39665" PGL_stop="38603"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39665" e_stop="39373"/>
            <exon e_start="39044" e_stop="38603"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.807" acc_prob="0.979" e_score="0.884"/>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.884">
            <gDNA_exon_boundary e_start="39665" e_stop="39373" e_length="293"/>
          </exon>
          <intron i_serial="1" don_prob="0.807" acc_prob="0.979">
            <gDNA_intron_boundary i_start="39372" i_stop="39045" i_length="328"/>
          </intron>
          <exon e_serial="2" e_score="0.914">
            <gDNA_exon_boundary e_start="39044" e_stop="38603" e_length="442"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39665" stop="39373"/>
              <exon start="39044" stop="38603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545933" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAAAGCAGGTCATGATGCCGATAATGAGGATCTGTTAGGCGTATTGCTTGAATCAAATTTCAAAGAAATTGAACAGCACGGAAACAAGGATTTTGGAATGAGCATCGAAGAAGTCATCGAAGAATGCAAGTTATTCTATTTTGCTGGCCAAGAAACTATAGCAGTCTTACTCGTGTGGACTCTGGTGTTGTTAAGTAGGTATCAAGATTGGCAGACACAGGCCAGAGAAGAAGTCTTGCAAGTGTTTGGGAGTCGGAAACCAGATTTTGATGGATTAAATCATCTAAAAGTT : GTAACGATGATCTTGTACGAGTCACTAAGGCTATATTCCCCATTATTTACACATAACAGACAGGCAAGTGAAGACACAGTATTAGTAGAATTGTGTCTACCAGCTGATGTGCTAGTTTCATTGCCCACGATCATATTGCATCATGACAAAGATATATGGGGTGAAGACGCAAACAAGTTCAATCCAGAGAGATTTAGAGAAGGAATATCAAGTGCAACAATGGGTAAAGTTACATATTTTCCATTTTCATGGGGTCCAAGAATATGCATTGGACAAAATTTTGCAATGTTAGAGGCAAAGATGACTCTCTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCGCCTCAACCCCTACTTACCATTCATCCTCAGTATGGTGCTCCTCTTATTTTCCACAAACTATAATTTCATATTACGTGAG</gDNA_template>
            <first_frame> *  K  Q  V  M  M  P  I  M  R  I  C  *  A  Y  C  L  N  Q  I  S  K  K  L  N  S  T  E  T  R  I  L  E  *  A  S  K  K  S  S  K  N  A  S  Y  S  I  L  L  A  K  K  L  *  Q  S  Y  S  C  G  L  W  C  C  *  V  G  I  K  I  G  R  H  R  P  E  K  K  S  C  K  C  L  G  V  G  N  Q  I  L  M  D  *  I  I  *  K  L :   *  R  *  S  C  T  S  H  *  G  Y  I  P  H  Y  L  H  I  T  D  R  Q  V  K  T  Q  Y  *  *  N  C  V  Y  Q  L  M  C  *  F  H  C  P  R  S  Y  C  I  M  T  K  I  Y  G  V  K  T  Q  T  S  S  I  Q  R  D  L  E  K  E  Y  Q  V  Q  Q  W  V  K  L  H  I  F  H  F  H  G  V  Q  E  Y  A  L  D  K  I  L  Q  C  *  R  Q  R  *  L  S  V  *  S  Y  K  A  S  L  L  N  C  L  H  P  T  H  M  R  L  N  P  Y  L  P  F  I  L  S  M  V  L  L  L  F  S  T  N  Y  N  F  I  L  R  E </first_frame>
            <second_frame>  E  S  R  S  *  C  R  *  *  G  S  V  R  R  I  A  *  I  K  F  Q  R  N  *  T  A  R  K  Q  G  F  W  N  E  H  R  R  S  H  R  R  M  Q  V  I  L  F  C  W  P  R  N  Y  S  S  L  T  R  V  D  S  G  V  V  K  *  V  S  R  L  A  D  T  G  Q  R  R  S  L  A  S  V  W  E  S  E  T  R  F  *  W  I  K  S  S  K  S   : C  N  D  D  L  V  R  V  T  K  A  I  F  P  I  I  Y  T  *  Q  T  G  K  *  R  H  S  I  S  R  I  V  S  T  S  *  C  A  S  F  I  A  H  D  H  I  A  S  *  Q  R  Y  M  G  *  R  R  K  Q  V  Q  S  R  E  I  *  R  R  N  I  K  C  N  N  G  *  S  Y  I  F  S  I  F  M  G  S  K  N  M  H  W  T  K  F  C  N  V  R  G  K  D  D  S  L  Y  D  P  T  K  L  L  F  *  I  V  S  I  L  H  T  C  A  S  T  P  T  Y  H  S  S  S  V  W  C  S  S  Y  F  P  Q  T  I  I  S  Y  Y  V   </second_frame>
            <third_frame>   K  A  G  H  D  A  D  N  E  D  L  L  G  V  L  L  E  S  N  F  K  E  I  E  Q  H  G  N  K  D  F  G  M  S  I  E  E  V  I  E  E  C  K  L  F  Y  F  A  G  Q  E  T  I  A  V  L  L  V  W  T  L  V  L  L  S  R  Y  Q  D  W  Q  T  Q  A  R  E  E  V  L  Q  V  F  G  S  R  K  P  D  F  D  G  L  N  H  L  K  V  :  V  T  M  I  L  Y  E  S  L  R  L  Y  S  P  L  F  T  H  N  R  Q  A  S  E  D  T  V  L  V  E  L  C  L  P  A  D  V  L  V  S  L  P  T  I  I  L  H  H  D  K  D  I  W  G  E  D  A  N  K  F  N  P  E  R  F  R  E  G  I  S  S  A  T  M  G  K  V  T  Y  F  P  F  S  W  G  P  R  I  C  I  G  Q  N  F  A  M  L  E  A  K  M  T  L  C  M  I  L  Q  S  F  S  F  E  L  S  P  S  Y  T  H  A  P  Q  P  L  L  T  I  H  P  Q  Y  G  A  P  L  I  F  H  K  L  *  F  H  I  T  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39663" stop="39373"/>
                    <exon start="39044" stop="38619"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAGHDADNEDLLGVLLESNFKEIEQHGNKDFGMSIEEVIEECKLFYFAGQETIAVLLVWTLVLLSRYQDWQTQAREEVLQVFGSRKPDFDGLNHLKVVTMILYESLRLYSPLFTHNRQASEDTVLVELCLPADVLVSLPTIILHHDKDIWGEDANKFNPERFREGISSATMGKVTYFPFSWGPRICIGQNFAMLEAKMTLCMILQSFSFELSPSYTHAPQPLLTIHPQYGAPLIFHKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="41874" PGL_stop="39753"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41874" e_stop="41597"/>
            <exon e_start="40807" e_stop="40590"/>
            <exon e_start="40244" e_stop="40006"/>
            <exon e_start="39760" e_stop="39753"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.956" acc_prob="0.428" e_score="0.978"/>
          <exon-intron don_prob="0.993" acc_prob="0.164" e_score="0.950"/>
          <exon-intron don_prob="0.984" acc_prob="0.970" e_score="0.887"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="41874" e_stop="41597" e_length="278"/>
          </exon>
          <intron i_serial="1" don_prob="0.956" acc_prob="0.428">
            <gDNA_intron_boundary i_start="41596" i_stop="40808" i_length="789"/>
          </intron>
          <exon e_serial="2" e_score="0.950">
            <gDNA_exon_boundary e_start="40807" e_stop="40590" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.164">
            <gDNA_intron_boundary i_start="40589" i_stop="40245" i_length="345"/>
          </intron>
          <exon e_serial="3" e_score="0.887">
            <gDNA_exon_boundary e_start="40244" e_stop="40006" e_length="239"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.970">
            <gDNA_intron_boundary i_start="40005" i_stop="39761" i_length="245"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39760" e_stop="39753" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41874" stop="41597"/>
              <exon start="40807" stop="40590"/>
              <exon start="40244" stop="40006"/>
              <exon start="39760" stop="39753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41865" stop="41597"/>
              <exon start="40807" stop="40590"/>
              <exon start="40244" stop="40006"/>
              <exon start="39760" stop="39753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545974" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACAAAATGGAATTAGTTACAGCATGTTGTTGTGCCATAACAATTACTCTGTTTGTTTGTTTATGGAAAGTACTGAATTGGGTTTGGTTCAGACCAAAGAAGTTGGAGAAATTGTTGAGGAAACAAGGGCTAAATGGGAATTCATACAGATTATTGTATGGAGACATGAAAGATTTTTCTAAGATGATTAAAGAAGCTAATTCAAAGCCCATGAATTTGTCTAATGATATAACTCCAAGATTGGTACCTTTCTTTCTTGAAACCATCAAGAAATATG : GGAAAAAGTCTTTTATTTGGTTGTGTCCAAAACCACAAGTACTAATCATGGATCCGGAGCTTATAAAGGAAGTATTCTCGAAAAATTATTTTTATCAAAAGCCTCATGGAAATCCATTTGCAGCGTTATTGGTACAAGGACTAGCAGCCTATGAGGAAGACAAATGGGCCAAACATAGAAAAATTATCAATCCCGCTTTCCATCTAGAGAAGCTAAAG : CATATGCTTCCAGCTTTTCACTTGAGTTGTAGTGAGATGTTGAGTAAATGGGAAGACGCTGTTGAAGGCTCTTGTGAGATAGATGTATGGCCTCACCTTCAGCAATTAACTTGTGATGTGATCTCTCGTACAGCTTTTGGTAGTAGTTACGAAGAAGGTAGAAAGATTTTTGAACTTCAAAGGGAACAAGCTCAGCATTTTATCGACACTGTACGCTCAGTTAATATCCCAAGATGGAG : ATTTTTGC</gDNA_template>
            <first_frame> K  Q  N  G  I  S  Y  S  M  L  L  C  H  N  N  Y  S  V  C  L  F  M  E  S  T  E  L  G  L  V  Q  T  K  E  V  G  E  I  V  E  E  T  R  A  K  W  E  F  I  Q  I  I  V  W  R  H  E  R  F  F  *  D  D  *  R  S  *  F  K  A  H  E  F  V  *  *  Y  N  S  K  I  G  T  F  L  S  *  N  H  Q  E  I  W :   E  K  V  F  Y  L  V  V  S  K  T  T  S  T  N  H  G  S  G  A  Y  K  G  S  I  L  E  K  L  F  L  S  K  A  S  W  K  S  I  C  S  V  I  G  T  R  T  S  S  L  *  G  R  Q  M  G  Q  T  *  K  N  Y  Q  S  R  F  P  S  R  E  A  K   : A  Y  A  S  S  F  S  L  E  L  *  *  D  V  E  *  M  G  R  R  C  *  R  L  L  *  D  R  C  M  A  S  P  S  A  I  N  L  *  C  D  L  S  Y  S  F  W  *  *  L  R  R  R  *  K  D  F  *  T  S  K  G  T  S  S  A  F  Y  R  H  C  T  L  S  *  Y  P  K  M  E  :  I  F   </first_frame>
            <second_frame>  N  K  M  E  L  V  T  A  C  C  C  A  I  T  I  T  L  F  V  C  L  W  K  V  L  N  W  V  W  F  R  P  K  K  L  E  K  L  L  R  K  Q  G  L  N  G  N  S  Y  R  L  L  Y  G  D  M  K  D  F  S  K  M  I  K  E  A  N  S  K  P  M  N  L  S  N  D  I  T  P  R  L  V  P  F  F  L  E  T  I  K  K  Y   : G  K  K  S  F  I  W  L  C  P  K  P  Q  V  L  I  M  D  P  E  L  I  K  E  V  F  S  K  N  Y  F  Y  Q  K  P  H  G  N  P  F  A  A  L  L  V  Q  G  L  A  A  Y  E  E  D  K  W  A  K  H  R  K  I  I  N  P  A  F  H  L  E  K  L  K  :  H  M  L  P  A  F  H  L  S  C  S  E  M  L  S  K  W  E  D  A  V  E  G  S  C  E  I  D  V  W  P  H  L  Q  Q  L  T  C  D  V  I  S  R  T  A  F  G  S  S  Y  E  E  G  R  K  I  F  E  L  Q  R  E  Q  A  Q  H  F  I  D  T  V  R  S  V  N  I  P  R  W  R :   F  L  </second_frame>
            <third_frame>   T  K  W  N  *  L  Q  H  V  V  V  P  *  Q  L  L  C  L  F  V  Y  G  K  Y  *  I  G  F  G  S  D  Q  R  S  W  R  N  C  *  G  N  K  G  *  M  G  I  H  T  D  Y  C  M  E  T  *  K  I  F  L  R  *  L  K  K  L  I  Q  S  P  *  I  C  L  M  I  *  L  Q  D  W  Y  L  S  F  L  K  P  S  R  N  M  :  G  K  S  L  L  F  G  C  V  Q  N  H  K  Y  *  S  W  I  R  S  L  *  R  K  Y  S  R  K  I  I  F  I  K  S  L  M  E  I  H  L  Q  R  Y  W  Y  K  D  *  Q  P  M  R  K  T  N  G  P  N  I  E  K  L  S  I  P  L  S  I  *  R  S  *  S :   I  C  F  Q  L  F  T  *  V  V  V  R  C  *  V  N  G  K  T  L  L  K  A  L  V  R  *  M  Y  G  L  T  F  S  N  *  L  V  M  *  S  L  V  Q  L  L  V  V  V  T  K  K  V  E  R  F  L  N  F  K  G  N  K  L  S  I  L  S  T  L  Y  A  Q  L  I  S  Q  D  G   : D  F  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41873" stop="41597"/>
                    <exon start="40807" stop="40590"/>
                    <exon start="40244" stop="40006"/>
                    <exon start="39760" stop="39754"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>741</number_coding_nucleotides>
                  <number_encoded_amino_acids>247</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKMELVTACCCAITITLFVCLWKVLNWVWFRPKKLEKLLRKQGLNGNSYRLLYGDMKDFSKMIKEANSKPMNLSNDITPRLVPFFLETIKKYGKKSFIWLCPKPQVLIMDPELIKEVFSKNYFYQKPHGNPFAALLVQGLAAYEEDKWAKHRKIINPAFHLEKLKHMLPAFHLSCSEMLSKWEDAVEGSCEIDVWPHLQQLTCDVISRTAFGSSYEEGRKIFELQREQAQHFIDTVRSVNIPRWRFL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="45251" PGL_stop="42984"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45251" e_stop="45034"/>
            <exon e_start="44522" e_stop="44278"/>
            <exon e_start="44182" e_stop="43798"/>
            <exon e_start="43706" e_stop="42984"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.210" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.584" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45251" e_stop="45034" e_length="218"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.210">
            <gDNA_intron_boundary i_start="45033" i_stop="44523" i_length="511"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44522" e_stop="44278" e_length="245"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="44277" i_stop="44183" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44182" e_stop="43798" e_length="385"/>
          </exon>
          <intron i_serial="3" don_prob="0.916" acc_prob="0.584">
            <gDNA_intron_boundary i_start="43797" i_stop="43707" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43706" e_stop="42984" e_length="723"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45251" stop="45034"/>
              <exon start="44522" stop="44278"/>
              <exon start="44182" stop="44149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45251" stop="45034"/>
              <exon start="44522" stop="44278"/>
              <exon start="44182" stop="44176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44520" stop="44278"/>
              <exon start="44182" stop="43949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44460" stop="44278"/>
              <exon start="44182" stop="43798"/>
              <exon start="43706" stop="43650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44354" stop="44278"/>
              <exon start="44182" stop="43798"/>
              <exon start="43706" stop="43335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44320" stop="44278"/>
              <exon start="44182" stop="43798"/>
              <exon start="43706" stop="43596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44315" stop="44278"/>
              <exon start="44182" stop="43806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44182" stop="43798"/>
              <exon start="43706" stop="43434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44182" stop="43798"/>
              <exon start="43706" stop="43602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44161" stop="43798"/>
              <exon start="43706" stop="43237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44096" stop="43819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44052" stop="43798"/>
              <exon start="43706" stop="43232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44044" stop="43798"/>
              <exon start="43706" stop="43342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43987" stop="43798"/>
              <exon start="43706" stop="43143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43886" stop="43798"/>
              <exon start="43706" stop="43266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43886" stop="43798"/>
              <exon start="43706" stop="43271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43886" stop="43798"/>
              <exon start="43706" stop="43290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43886" stop="43798"/>
              <exon start="43706" stop="43310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43886" stop="43798"/>
              <exon start="43706" stop="43415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43886" stop="43798"/>
              <exon start="43706" stop="43554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43883" stop="43798"/>
              <exon start="43706" stop="43344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43847" stop="43798"/>
              <exon start="43706" stop="43071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43826" stop="43798"/>
              <exon start="43706" stop="43117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43815" stop="43798"/>
              <exon start="43706" stop="43170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43815" stop="43798"/>
              <exon start="43706" stop="43269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43684" stop="42984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391293" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43641" stop="43084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43588" stop="43148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401926" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43423" stop="42995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43202" stop="42984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308364" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAAAATGTTTTACATGGATGGGTCCAAGACCACAAATACTAATCATGGATCCTGAGCTTATAAAGGAAGTACTTTCGAAAACCTACGTGTATCAAAAGCCTCATGGAAATCCGTTAGGCACGTTATTTGTACAAGGATTAGTAAGCTATGAGAAAGATAAATGGGCCAAACATAGAAAAATCATCAATCCCGCGTTCCATCTAGAGAAGTTAAAG : CATATGCTTCCAGCTTTTTACTTGAGCTGTAGTGAGATGCTGAGCAAATGGGAAGACGTTGTTCGAGTTGAAGGCTCTCATGAGATAGATGTATGGCCTCACCTGCAGCAATTGACTTGTGACGTGATCTCTCGGACAGCTTTTGGCAGTAGTTATGAAGAAGGTAGAAAGATTTTTGAACTTCAAAAGGAACAAGCTCAGCATTTTCTCGAAGTTATACGCTCAGTTTATATCCCAGGATGGAG : ATTTTTACCAACAAAGAGGAACAGAAGAATGAAGGAATTAAAAAATGATGTTCGGTCTTCAATTAGAGGTATTATTGATAAAAGATTGAAGGCAATGGAAGCAGGGAACGCGGATAATGAGGATCTATTGGGCATATTGCTGGAATCGAATTTTAAAGAAATTGAACTGCACGGTAACAAGGACTTTGGAATGAGTATCGAAGAAGTCATTGAAGAATGCAAGCTGTTCTATTTTGCTGGTGCAGAAACTACATCAGTGTGGATTCTGTGGACGCTGGTGTTGTTGAGCAGACATCCAGATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTTTGATGGATTAAATCATCTAAAAGTT : GTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCAACAAAAGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCTCCTCAATCCTTGGTAACCACTCAGCCTCAGTATGGTGCTCCACTTATTTTCCACAAACTATAATTTCACAATCTCGTGAAGAGTTTATTCAGACTCGATTCAGTGATGGAGTTACAATATCGAAATACGGGTTCAGAAACAGTTTCTCTATTTCATAAAGACAGGGGATTATGTGTTGTACTCTCCACTCTCCCCTGACCCTCATATTGGGTATGTTGTTTTTGTTATTCGGACAAACTCAGTAGTTTTCGTTAAAAGCTTGCATTTGTTTGAGCAAATCCACTAAAAATACTATACAACATCCGTGCTAGCACGAACTCAATATATATTGCTTTATGTGAAATAGTTGAAATTTGGAGA</gDNA_template>
            <first_frame> G  K  N  V  L  H  G  W  V  Q  D  H  K  Y  *  S  W  I  L  S  L  *  R  K  Y  F  R  K  P  T  C  I  K  S  L  M  E  I  R  *  A  R  Y  L  Y  K  D  *  *  A  M  R  K  I  N  G  P  N  I  E  K  S  S  I  P  R  S  I  *  R  S  *  S :   I  C  F  Q  L  F  T  *  A  V  V  R  C  *  A  N  G  K  T  L  F  E  L  K  A  L  M  R  *  M  Y  G  L  T  C  S  N  *  L  V  T  *  S  L  G  Q  L  L  A  V  V  M  K  K  V  E  R  F  L  N  F  K  R  N  K  L  S  I  F  S  K  L  Y  A  Q  F  I  S  Q  D  G   : D  F  Y  Q  Q  R  G  T  E  E  *  R  N  *  K  M  M  F  G  L  Q  L  E  V  L  L  I  K  D  *  R  Q  W  K  Q  G  T  R  I  M  R  I  Y  W  A  Y  C  W  N  R  I  L  K  K  L  N  C  T  V  T  R  T  L  E  *  V  S  K  K  S  L  K  N  A  S  C  S  I  L  L  V  Q  K  L  H  Q  C  G  F  C  G  R  W  C  C  *  A  D  I  Q  I  G  R  N  G  P  E  K  K  Y  C  K  C  L  G  V  E  N  Q  I  L  M  D  *  I  I  *  K  L :   *  Q  *  S  C  T  S  R  *  G  Y  I  P  Q  *  Q  Y  L  R  D  E  F  M  K  T  L  H  *  E  K  Y  L  Y  Q  L  V  C  *  S  H  C  Q  *  F  Y  C  I  M  I  K  I  Y  G  V  K  M  Q  P  S  S  I  Q  R  D  L  V  K  E  Y  Q  V  Q  Q  K  V  K  L  H  I  F  H  L  L  G  V  Q  E  Y  A  L  D  K  I  L  P  Y  *  K  Q  R  *  L  C  V  *  S  Y  K  A  S  L  L  N  C  L  H  P  T  H  M  L  L  N  P  W  *  P  L  S  L  S  M  V  L  H  L  F  S  T  N  Y  N  F  T  I  S  *  R  V  Y  S  D  S  I  Q  *  W  S  Y  N  I  E  I  R  V  Q  K  Q  F  L  Y  F  I  K  T  G  D  Y  V  L  Y  S  P  L  S  P  D  P  H  I  G  Y  V  V  F  V  I  R  T  N  S  V  V  F  V  K  S  L  H  L  F  E  Q  I  H  *  K  Y  Y  T  T  S  V  L  A  R  T  Q  Y  I  L  L  Y  V  K  *  L  K  F  G   </first_frame>
            <second_frame>  E  K  M  F  Y  M  D  G  S  K  T  T  N  T  N  H  G  S  *  A  Y  K  G  S  T  F  E  N  L  R  V  S  K  A  S  W  K  S  V  R  H  V  I  C  T  R  I  S  K  L  *  E  R  *  M  G  Q  T  *  K  N  H  Q  S  R  V  P  S  R  E  V  K   : A  Y  A  S  S  F  L  L  E  L  *  *  D  A  E  Q  M  G  R  R  C  S  S  *  R  L  S  *  D  R  C  M  A  S  P  A  A  I  D  L  *  R  D  L  S  D  S  F  W  Q  *  L  *  R  R  *  K  D  F  *  T  S  K  G  T  S  S  A  F  S  R  S  Y  T  L  S  L  Y  P  R  M  E  :  I  F  T  N  K  E  E  Q  K  N  E  G  I  K  K  *  C  S  V  F  N  *  R  Y  Y  *  *  K  I  E  G  N  G  S  R  E  R  G  *  *  G  S  I  G  H  I  A  G  I  E  F  *  R  N  *  T  A  R  *  Q  G  L  W  N  E  Y  R  R  S  H  *  R  M  Q  A  V  L  F  C  W  C  R  N  Y  I  S  V  D  S  V  D  A  G  V  V  E  Q  T  S  R  L  A  G  T  G  Q  R  R  S  I  A  S  A  W  E  S  K  T  R  F  *  W  I  K  S  S  K  S   : C  N  N  D  L  V  R  V  V  E  V  I  F  P  N  N  S  T  Y  A  T  S  L  *  R  H  Y  T  R  R  S  I  S  T  N  W  C  A  S  L  I  A  N  D  F  I  A  S  *  *  R  Y  M  G  *  R  C  N  Q  V  Q  S  R  E  I  *  *  R  N  I  K  C  N  K  R  S  S  Y  I  F  S  I  C  L  G  S  K  N  M  H  W  T  K  F  C  H  I  R  S  K  D  D  S  V  Y  D  P  T  K  L  L  F  *  I  V  S  I  L  H  T  C  S  S  I  L  G  N  H  S  A  S  V  W  C  S  T  Y  F  P  Q  T  I  I  S  Q  S  R  E  E  F  I  Q  T  R  F  S  D  G  V  T  I  S  K  Y  G  F  R  N  S  F  S  I  S  *  R  Q  G  I  M  C  C  T  L  H  S  P  L  T  L  I  L  G  M  L  F  L  L  F  G  Q  T  Q  *  F  S  L  K  A  C  I  C  L  S  K  S  T  K  N  T  I  Q  H  P  C  *  H  E  L  N  I  Y  C  F  M  *  N  S  *  N  L  E  </second_frame>
            <third_frame>   K  K  C  F  T  W  M  G  P  R  P  Q  I  L  I  M  D  P  E  L  I  K  E  V  L  S  K  T  Y  V  Y  Q  K  P  H  G  N  P  L  G  T  L  F  V  Q  G  L  V  S  Y  E  K  D  K  W  A  K  H  R  K  I  I  N  P  A  F  H  L  E  K  L  K  :  H  M  L  P  A  F  Y  L  S  C  S  E  M  L  S  K  W  E  D  V  V  R  V  E  G  S  H  E  I  D  V  W  P  H  L  Q  Q  L  T  C  D  V  I  S  R  T  A  F  G  S  S  Y  E  E  G  R  K  I  F  E  L  Q  K  E  Q  A  Q  H  F  L  E  V  I  R  S  V  Y  I  P  G  W  R :   F  L  P  T  K  R  N  R  R  M  K  E  L  K  N  D  V  R  S  S  I  R  G  I  I  D  K  R  L  K  A  M  E  A  G  N  A  D  N  E  D  L  L  G  I  L  L  E  S  N  F  K  E  I  E  L  H  G  N  K  D  F  G  M  S  I  E  E  V  I  E  E  C  K  L  F  Y  F  A  G  A  E  T  T  S  V  W  I  L  W  T  L  V  L  L  S  R  H  P  D  W  Q  E  R  A  R  E  E  V  L  Q  V  L  G  S  R  K  P  D  F  D  G  L  N  H  L  K  V  :  V  T  M  I  L  Y  E  S  L  R  L  Y  S  P  I  T  V  L  T  R  R  V  Y  E  D  I  T  L  G  E  V  S  L  P  T  G  V  L  V  S  L  P  M  I  L  L  H  H  D  K  D  I  W  G  E  D  A  T  K  F  N  P  E  R  F  S  E  G  I  S  S  A  T  K  G  Q  V  T  Y  F  P  F  A  W  G  P  R  I  C  I  G  Q  N  F  A  I  L  E  A  K  M  T  L  C  M  I  L  Q  S  F  S  F  E  L  S  P  S  Y  T  H  A  P  Q  S  L  V  T  T  Q  P  Q  Y  G  A  P  L  I  F  H  K  L  *  F  H  N  L  V  K  S  L  F  R  L  D  S  V  M  E  L  Q  Y  R  N  T  G  S  E  T  V  S  L  F  H  K  D  R  G  L  C  V  V  L  S  T  L  P  *  P  S  Y  W  V  C  C  F  C  Y  S  D  K  L  S  S  F  R  *  K  L  A  F  V  *  A  N  P  L  K  I  L  Y  N  I  R  A  S  T  N  S  I  Y  I  A  L  C  E  I  V  E  I  W  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45249" stop="45034"/>
                    <exon start="44522" stop="44278"/>
                    <exon start="44182" stop="43798"/>
                    <exon start="43706" stop="43281"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1269</number_coding_nucleotides>
                  <number_encoded_amino_acids>423</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKCFTWMGPRPQILIMDPELIKEVLSKTYVYQKPHGNPLGTLFVQGLVSYEKDKWAKHRKIINPAFHLEKLKHMLPAFYLSCSEMLSKWEDVVRVEGSHEIDVWPHLQQLTCDVISRTAFGSSYEEGRKIFELQKEQAQHFLEVIRSVYIPGWRFLPTKRNRRMKELKNDVRSSIRGIIDKRLKAMEAGNADNEDLLGILLESNFKEIELHGNKDFGMSIEEVIEECKLFYFAGAETTSVWILWTLVLLSRHPDWQERAREEVLQVLGSRKPDFDGLNHLKVVTMILYESLRLYSPITVLTRRVYEDITLGEVSLPTGVLVSLPMILLHHDKDIWGEDATKFNPERFSEGISSATKGQVTYFPFAWGPRICIGQNFAILEAKMTLCMILQSFSFELSPSYTHAPQSLVTTQPQYGAPLIFHKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="45251" e_stop="45034"/>
            <exon e_start="44509" e_stop="44278"/>
            <exon e_start="44182" e_stop="43798"/>
            <exon e_start="43706" e_stop="42984"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="0.931"/>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="0.914"/>
          <exon-intron don_prob="0.916" acc_prob="0.584" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="45251" e_stop="45034" e_length="218"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="45033" i_stop="44510" i_length="524"/>
          </intron>
          <exon e_serial="2" e_score="0.914">
            <gDNA_exon_boundary e_start="44509" e_stop="44278" e_length="232"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="44277" i_stop="44183" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44182" e_stop="43798" e_length="385"/>
          </exon>
          <intron i_serial="3" don_prob="0.916" acc_prob="0.584">
            <gDNA_intron_boundary i_start="43797" i_stop="43707" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43706" e_stop="42984" e_length="723"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45251" stop="45034"/>
              <exon start="44509" stop="44278"/>
              <exon start="44182" stop="44037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44460" stop="44278"/>
              <exon start="44182" stop="43798"/>
              <exon start="43706" stop="43650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44354" stop="44278"/>
              <exon start="44182" stop="43798"/>
              <exon start="43706" stop="43335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44320" stop="44278"/>
              <exon start="44182" stop="43798"/>
              <exon start="43706" stop="43596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44315" stop="44278"/>
              <exon start="44182" stop="43806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44182" stop="43798"/>
              <exon start="43706" stop="43434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44182" stop="43798"/>
              <exon start="43706" stop="43602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44161" stop="43798"/>
              <exon start="43706" stop="43237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44096" stop="43819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44052" stop="43798"/>
              <exon start="43706" stop="43232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44044" stop="43798"/>
              <exon start="43706" stop="43342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43987" stop="43798"/>
              <exon start="43706" stop="43143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43886" stop="43798"/>
              <exon start="43706" stop="43266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43886" stop="43798"/>
              <exon start="43706" stop="43271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43886" stop="43798"/>
              <exon start="43706" stop="43290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43886" stop="43798"/>
              <exon start="43706" stop="43310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43886" stop="43798"/>
              <exon start="43706" stop="43415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43886" stop="43798"/>
              <exon start="43706" stop="43554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43883" stop="43798"/>
              <exon start="43706" stop="43344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43847" stop="43798"/>
              <exon start="43706" stop="43071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43826" stop="43798"/>
              <exon start="43706" stop="43117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43815" stop="43798"/>
              <exon start="43706" stop="43170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43815" stop="43798"/>
              <exon start="43706" stop="43269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43684" stop="42984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391293" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43641" stop="43084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43588" stop="43148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401926" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43423" stop="42995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43202" stop="42984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308364" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAAAATGTTTTACATGGATGGGTCCAAGACCACAAATACTAATCATGGATCCTGAGCTTATAAAGGAAGTACTTTCGAAAACCTACGTGTATCAAAAGCCTCATGGAAATCCGTTAGGCACGTTATTTGTACAAGGATTAGTAAGCTATGAGAAAGATAAATGGGCCAAACATAGAAAAATCATCAATCCCGCGTTCCATCTAGAGAAGTTAAAG : CTTTTTACTTGAGCTGTAGTGAGATGCTGAGCAAATGGGAAGACGTTGTTCGAGTTGAAGGCTCTCATGAGATAGATGTATGGCCTCACCTGCAGCAATTGACTTGTGACGTGATCTCTCGGACAGCTTTTGGCAGTAGTTATGAAGAAGGTAGAAAGATTTTTGAACTTCAAAAGGAACAAGCTCAGCATTTTCTCGAAGTTATACGCTCAGTTTATATCCCAGGATGGAG : ATTTTTACCAACAAAGAGGAACAGAAGAATGAAGGAATTAAAAAATGATGTTCGGTCTTCAATTAGAGGTATTATTGATAAAAGATTGAAGGCAATGGAAGCAGGGAACGCGGATAATGAGGATCTATTGGGCATATTGCTGGAATCGAATTTTAAAGAAATTGAACTGCACGGTAACAAGGACTTTGGAATGAGTATCGAAGAAGTCATTGAAGAATGCAAGCTGTTCTATTTTGCTGGTGCAGAAACTACATCAGTGTGGATTCTGTGGACGCTGGTGTTGTTGAGCAGACATCCAGATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTTTGATGGATTAAATCATCTAAAAGTT : GTAACAATGATCTTGTACGAGTCGTTGAGGTTATATTCCCCAATAACAGTACTTACGCGACGAGTTTATGAAGACATTACACTAGGAGAAGTATCTCTACCAACTGGTGTGCTAGTCTCATTGCCAATGATTTTATTGCATCATGATAAAGATATATGGGGTGAAGATGCAACCAAGTTCAATCCAGAGAGATTTAGTGAAGGAATATCAAGTGCAACAAAAGGTCAAGTTACATATTTTCCATTTGCTTGGGGTCCAAGAATATGCATTGGACAAAATTTTGCCATATTAGAAGCAAAGATGACTCTGTGTATGATCCTACAAAGCTTCTCTTTTGAATTGTCTCCATCCTACACACATGCTCCTCAATCCTTGGTAACCACTCAGCCTCAGTATGGTGCTCCACTTATTTTCCACAAACTATAATTTCACAATCTCGTGAAGAGTTTATTCAGACTCGATTCAGTGATGGAGTTACAATATCGAAATACGGGTTCAGAAACAGTTTCTCTATTTCATAAAGACAGGGGATTATGTGTTGTACTCTCCACTCTCCCCTGACCCTCATATTGGGTATGTTGTTTTTGTTATTCGGACAAACTCAGTAGTTTTCGTTAAAAGCTTGCATTTGTTTGAGCAAATCCACTAAAAATACTATACAACATCCGTGCTAGCACGAACTCAATATATATTGCTTTATGTGAAATAGTTGAAATTTGGAGA</gDNA_template>
            <first_frame> G  K  N  V  L  H  G  W  V  Q  D  H  K  Y  *  S  W  I  L  S  L  *  R  K  Y  F  R  K  P  T  C  I  K  S  L  M  E  I  R  *  A  R  Y  L  Y  K  D  *  *  A  M  R  K  I  N  G  P  N  I  E  K  S  S  I  P  R  S  I  *  R  S  *  S :   F  L  L  E  L  *  *  D  A  E  Q  M  G  R  R  C  S  S  *  R  L  S  *  D  R  C  M  A  S  P  A  A  I  D  L  *  R  D  L  S  D  S  F  W  Q  *  L  *  R  R  *  K  D  F  *  T  S  K  G  T  S  S  A  F  S  R  S  Y  T  L  S  L  Y  P  R  M  E  :  I  F  T  N  K  E  E  Q  K  N  E  G  I  K  K  *  C  S  V  F  N  *  R  Y  Y  *  *  K  I  E  G  N  G  S  R  E  R  G  *  *  G  S  I  G  H  I  A  G  I  E  F  *  R  N  *  T  A  R  *  Q  G  L  W  N  E  Y  R  R  S  H  *  R  M  Q  A  V  L  F  C  W  C  R  N  Y  I  S  V  D  S  V  D  A  G  V  V  E  Q  T  S  R  L  A  G  T  G  Q  R  R  S  I  A  S  A  W  E  S  K  T  R  F  *  W  I  K  S  S  K  S   : C  N  N  D  L  V  R  V  V  E  V  I  F  P  N  N  S  T  Y  A  T  S  L  *  R  H  Y  T  R  R  S  I  S  T  N  W  C  A  S  L  I  A  N  D  F  I  A  S  *  *  R  Y  M  G  *  R  C  N  Q  V  Q  S  R  E  I  *  *  R  N  I  K  C  N  K  R  S  S  Y  I  F  S  I  C  L  G  S  K  N  M  H  W  T  K  F  C  H  I  R  S  K  D  D  S  V  Y  D  P  T  K  L  L  F  *  I  V  S  I  L  H  T  C  S  S  I  L  G  N  H  S  A  S  V  W  C  S  T  Y  F  P  Q  T  I  I  S  Q  S  R  E  E  F  I  Q  T  R  F  S  D  G  V  T  I  S  K  Y  G  F  R  N  S  F  S  I  S  *  R  Q  G  I  M  C  C  T  L  H  S  P  L  T  L  I  L  G  M  L  F  L  L  F  G  Q  T  Q  *  F  S  L  K  A  C  I  C  L  S  K  S  T  K  N  T  I  Q  H  P  C  *  H  E  L  N  I  Y  C  F  M  *  N  S  *  N  L  E  </first_frame>
            <second_frame>  E  K  M  F  Y  M  D  G  S  K  T  T  N  T  N  H  G  S  *  A  Y  K  G  S  T  F  E  N  L  R  V  S  K  A  S  W  K  S  V  R  H  V  I  C  T  R  I  S  K  L  *  E  R  *  M  G  Q  T  *  K  N  H  Q  S  R  V  P  S  R  E  V  K   : A  F  Y  L  S  C  S  E  M  L  S  K  W  E  D  V  V  R  V  E  G  S  H  E  I  D  V  W  P  H  L  Q  Q  L  T  C  D  V  I  S  R  T  A  F  G  S  S  Y  E  E  G  R  K  I  F  E  L  Q  K  E  Q  A  Q  H  F  L  E  V  I  R  S  V  Y  I  P  G  W  R :   F  L  P  T  K  R  N  R  R  M  K  E  L  K  N  D  V  R  S  S  I  R  G  I  I  D  K  R  L  K  A  M  E  A  G  N  A  D  N  E  D  L  L  G  I  L  L  E  S  N  F  K  E  I  E  L  H  G  N  K  D  F  G  M  S  I  E  E  V  I  E  E  C  K  L  F  Y  F  A  G  A  E  T  T  S  V  W  I  L  W  T  L  V  L  L  S  R  H  P  D  W  Q  E  R  A  R  E  E  V  L  Q  V  L  G  S  R  K  P  D  F  D  G  L  N  H  L  K  V  :  V  T  M  I  L  Y  E  S  L  R  L  Y  S  P  I  T  V  L  T  R  R  V  Y  E  D  I  T  L  G  E  V  S  L  P  T  G  V  L  V  S  L  P  M  I  L  L  H  H  D  K  D  I  W  G  E  D  A  T  K  F  N  P  E  R  F  S  E  G  I  S  S  A  T  K  G  Q  V  T  Y  F  P  F  A  W  G  P  R  I  C  I  G  Q  N  F  A  I  L  E  A  K  M  T  L  C  M  I  L  Q  S  F  S  F  E  L  S  P  S  Y  T  H  A  P  Q  S  L  V  T  T  Q  P  Q  Y  G  A  P  L  I  F  H  K  L  *  F  H  N  L  V  K  S  L  F  R  L  D  S  V  M  E  L  Q  Y  R  N  T  G  S  E  T  V  S  L  F  H  K  D  R  G  L  C  V  V  L  S  T  L  P  *  P  S  Y  W  V  C  C  F  C  Y  S  D  K  L  S  S  F  R  *  K  L  A  F  V  *  A  N  P  L  K  I  L  Y  N  I  R  A  S  T  N  S  I  Y  I  A  L  C  E  I  V  E  I  W  R </second_frame>
            <third_frame>   K  K  C  F  T  W  M  G  P  R  P  Q  I  L  I  M  D  P  E  L  I  K  E  V  L  S  K  T  Y  V  Y  Q  K  P  H  G  N  P  L  G  T  L  F  V  Q  G  L  V  S  Y  E  K  D  K  W  A  K  H  R  K  I  I  N  P  A  F  H  L  E  K  L  K  :  L  F  T  *  A  V  V  R  C  *  A  N  G  K  T  L  F  E  L  K  A  L  M  R  *  M  Y  G  L  T  C  S  N  *  L  V  T  *  S  L  G  Q  L  L  A  V  V  M  K  K  V  E  R  F  L  N  F  K  R  N  K  L  S  I  F  S  K  L  Y  A  Q  F  I  S  Q  D  G   : D  F  Y  Q  Q  R  G  T  E  E  *  R  N  *  K  M  M  F  G  L  Q  L  E  V  L  L  I  K  D  *  R  Q  W  K  Q  G  T  R  I  M  R  I  Y  W  A  Y  C  W  N  R  I  L  K  K  L  N  C  T  V  T  R  T  L  E  *  V  S  K  K  S  L  K  N  A  S  C  S  I  L  L  V  Q  K  L  H  Q  C  G  F  C  G  R  W  C  C  *  A  D  I  Q  I  G  R  N  G  P  E  K  K  Y  C  K  C  L  G  V  E  N  Q  I  L  M  D  *  I  I  *  K  L :   *  Q  *  S  C  T  S  R  *  G  Y  I  P  Q  *  Q  Y  L  R  D  E  F  M  K  T  L  H  *  E  K  Y  L  Y  Q  L  V  C  *  S  H  C  Q  *  F  Y  C  I  M  I  K  I  Y  G  V  K  M  Q  P  S  S  I  Q  R  D  L  V  K  E  Y  Q  V  Q  Q  K  V  K  L  H  I  F  H  L  L  G  V  Q  E  Y  A  L  D  K  I  L  P  Y  *  K  Q  R  *  L  C  V  *  S  Y  K  A  S  L  L  N  C  L  H  P  T  H  M  L  L  N  P  W  *  P  L  S  L  S  M  V  L  H  L  F  S  T  N  Y  N  F  T  I  S  *  R  V  Y  S  D  S  I  Q  *  W  S  Y  N  I  E  I  R  V  Q  K  Q  F  L  Y  F  I  K  T  G  D  Y  V  L  Y  S  P  L  S  P  D  P  H  I  G  Y  V  V  F  V  I  R  T  N  S  V  V  F  V  K  S  L  H  L  F  E  Q  I  H  *  K  Y  Y  T  T  S  V  L  A  R  T  Q  Y  I  L  L  Y  V  K  *  L  K  F  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45073" stop="45034"/>
                    <exon start="44509" stop="44278"/>
                    <exon start="44182" stop="43798"/>
                    <exon start="43706" stop="43281"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1080</number_coding_nucleotides>
                  <number_encoded_amino_acids>360</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNHQSRVPSREVKAFYLSCSEMLSKWEDVVRVEGSHEIDVWPHLQQLTCDVISRTAFGSSYEEGRKIFELQKEQAQHFLEVIRSVYIPGWRFLPTKRNRRMKELKNDVRSSIRGIIDKRLKAMEAGNADNEDLLGILLESNFKEIELHGNKDFGMSIEEVIEECKLFYFAGAETTSVWILWTLVLLSRHPDWQERAREEVLQVLGSRKPDFDGLNHLKVVTMILYESLRLYSPITVLTRRVYEDITLGEVSLPTGVLVSLPMILLHHDKDIWGEDATKFNPERFSEGISSATKGQVTYFPFAWGPRICIGQNFAILEAKMTLCMILQSFSFELSPSYTHAPQSLVTTQPQYGAPLIFHKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="45251" e_stop="45034"/>
            <exon e_start="44522" e_stop="44278"/>
            <exon e_start="44182" e_stop="43739"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.210" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45251" e_stop="45034" e_length="218"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.210">
            <gDNA_intron_boundary i_start="45033" i_stop="44523" i_length="511"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44522" e_stop="44278" e_length="245"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="44277" i_stop="44183" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44182" e_stop="43739" e_length="444"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45251" stop="45034"/>
              <exon start="44522" stop="44278"/>
              <exon start="44182" stop="44149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45251" stop="45034"/>
              <exon start="44522" stop="44278"/>
              <exon start="44182" stop="44176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44520" stop="44278"/>
              <exon start="44182" stop="43949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44315" stop="44278"/>
              <exon start="44182" stop="43806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44170" stop="43739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44096" stop="43819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289950" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAAAATGTTTTACATGGATGGGTCCAAGACCACAAATACTAATCATGGATCCTGAGCTTATAAAGGAAGTACTTTCGAAAACCTACGTGTATCAAAAGCCTCATGGAAATCCGTTAGGCACGTTATTTGTACAAGGATTAGTAAGCTATGAGAAAGATAAATGGGCCAAACATAGAAAAATCATCAATCCCGCGTTCCATCTAGAGAAGTTAAAG : CATATGCTTCCAGCTTTTTACTTGAGCTGTAGTGAGATGCTGAGCAAATGGGAAGACGTTGTTCGAGTTGAAGGCTCTCATGAGATAGATGTATGGCCTCACCTGCAGCAATTGACTTGTGACGTGATCTCTCGGACAGCTTTTGGCAGTAGTTATGAAGAAGGTAGAAAGATTTTTGAACTTCAAAAGGAACAAGCTCAGCATTTTCTCGAAGTTATACGCTCAGTTTATATCCCAGGATGGAG : ATTTTTACCAACAAAGAGGAACAGAAGAATGAAGGAATTAAAAAATGATGTTCGGTCTTCAATTAGAGGTATTATTGATAAAAGATTGAAGGCAATGGAAGCAGGGAACGCGGATAATGAGGATCTATTGGGCATATTGCTGGAATCGAATTTTAAAGAAATTGAACTGCACGGTAACAAGGACTTTGGAATGAGTATCGAAGAAGTCATTGAAGAATGCAAGCTGTTCTATTTTGCTGGTGCAGAAACTACATCAGTGTGGATTCTGTGGACGCTGGTGTTGTTGAGCAGACATCCAGATTGGCAGGAACGGGCCAGAGAAGAAGTATTGCAAGTGCTTGGGAGTCGAAAACCAGATTTTGATGGATTAAATCATCTAAAAGTTGTAAGTATTCTTGTTCTGCCATTGGTACAAAAAGCACGTGTGAATTTCTTTTGATCATC</gDNA_template>
            <first_frame> G  K  N  V  L  H  G  W  V  Q  D  H  K  Y  *  S  W  I  L  S  L  *  R  K  Y  F  R  K  P  T  C  I  K  S  L  M  E  I  R  *  A  R  Y  L  Y  K  D  *  *  A  M  R  K  I  N  G  P  N  I  E  K  S  S  I  P  R  S  I  *  R  S  *  S :   I  C  F  Q  L  F  T  *  A  V  V  R  C  *  A  N  G  K  T  L  F  E  L  K  A  L  M  R  *  M  Y  G  L  T  C  S  N  *  L  V  T  *  S  L  G  Q  L  L  A  V  V  M  K  K  V  E  R  F  L  N  F  K  R  N  K  L  S  I  F  S  K  L  Y  A  Q  F  I  S  Q  D  G   : D  F  Y  Q  Q  R  G  T  E  E  *  R  N  *  K  M  M  F  G  L  Q  L  E  V  L  L  I  K  D  *  R  Q  W  K  Q  G  T  R  I  M  R  I  Y  W  A  Y  C  W  N  R  I  L  K  K  L  N  C  T  V  T  R  T  L  E  *  V  S  K  K  S  L  K  N  A  S  C  S  I  L  L  V  Q  K  L  H  Q  C  G  F  C  G  R  W  C  C  *  A  D  I  Q  I  G  R  N  G  P  E  K  K  Y  C  K  C  L  G  V  E  N  Q  I  L  M  D  *  I  I  *  K  L  *  V  F  L  F  C  H  W  Y  K  K  H  V  *  I  S  F  D  H  </first_frame>
            <second_frame>  E  K  M  F  Y  M  D  G  S  K  T  T  N  T  N  H  G  S  *  A  Y  K  G  S  T  F  E  N  L  R  V  S  K  A  S  W  K  S  V  R  H  V  I  C  T  R  I  S  K  L  *  E  R  *  M  G  Q  T  *  K  N  H  Q  S  R  V  P  S  R  E  V  K   : A  Y  A  S  S  F  L  L  E  L  *  *  D  A  E  Q  M  G  R  R  C  S  S  *  R  L  S  *  D  R  C  M  A  S  P  A  A  I  D  L  *  R  D  L  S  D  S  F  W  Q  *  L  *  R  R  *  K  D  F  *  T  S  K  G  T  S  S  A  F  S  R  S  Y  T  L  S  L  Y  P  R  M  E  :  I  F  T  N  K  E  E  Q  K  N  E  G  I  K  K  *  C  S  V  F  N  *  R  Y  Y  *  *  K  I  E  G  N  G  S  R  E  R  G  *  *  G  S  I  G  H  I  A  G  I  E  F  *  R  N  *  T  A  R  *  Q  G  L  W  N  E  Y  R  R  S  H  *  R  M  Q  A  V  L  F  C  W  C  R  N  Y  I  S  V  D  S  V  D  A  G  V  V  E  Q  T  S  R  L  A  G  T  G  Q  R  R  S  I  A  S  A  W  E  S  K  T  R  F  *  W  I  K  S  S  K  S  C  K  Y  S  C  S  A  I  G  T  K  S  T  C  E  F  L  L  I  I </second_frame>
            <third_frame>   K  K  C  F  T  W  M  G  P  R  P  Q  I  L  I  M  D  P  E  L  I  K  E  V  L  S  K  T  Y  V  Y  Q  K  P  H  G  N  P  L  G  T  L  F  V  Q  G  L  V  S  Y  E  K  D  K  W  A  K  H  R  K  I  I  N  P  A  F  H  L  E  K  L  K  :  H  M  L  P  A  F  Y  L  S  C  S  E  M  L  S  K  W  E  D  V  V  R  V  E  G  S  H  E  I  D  V  W  P  H  L  Q  Q  L  T  C  D  V  I  S  R  T  A  F  G  S  S  Y  E  E  G  R  K  I  F  E  L  Q  K  E  Q  A  Q  H  F  L  E  V  I  R  S  V  Y  I  P  G  W  R :   F  L  P  T  K  R  N  R  R  M  K  E  L  K  N  D  V  R  S  S  I  R  G  I  I  D  K  R  L  K  A  M  E  A  G  N  A  D  N  E  D  L  L  G  I  L  L  E  S  N  F  K  E  I  E  L  H  G  N  K  D  F  G  M  S  I  E  E  V  I  E  E  C  K  L  F  Y  F  A  G  A  E  T  T  S  V  W  I  L  W  T  L  V  L  L  S  R  H  P  D  W  Q  E  R  A  R  E  E  V  L  Q  V  L  G  S  R  K  P  D  F  D  G  L  N  H  L  K  V  V  S  I  L  V  L  P  L  V  Q  K  A  R  V  N  F  F  *  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45249" stop="45034"/>
                    <exon start="44522" stop="44278"/>
                    <exon start="44182" stop="43744"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>897</number_coding_nucleotides>
                  <number_encoded_amino_acids>299</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKCFTWMGPRPQILIMDPELIKEVLSKTYVYQKPHGNPLGTLFVQGLVSYEKDKWAKHRKIINPAFHLEKLKHMLPAFYLSCSEMLSKWEDVVRVEGSHEIDVWPHLQQLTCDVISRTAFGSSYEEGRKIFELQKEQAQHFLEVIRSVYIPGWRFLPTKRNRRMKELKNDVRSSIRGIIDKRLKAMEAGNADNEDLLGILLESNFKEIELHGNKDFGMSIEEVIEECKLFYFAGAETTSVWILWTLVLLSRHPDWQERAREEVLQVLGSRKPDFDGLNHLKVVSILVLPLVQKARVNFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="47663" PGL_stop="52829"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47663" e_stop="48457"/>
            <exon e_start="48546" e_stop="48619"/>
            <exon e_start="48754" e_stop="48851"/>
            <exon e_start="48981" e_stop="49190"/>
            <exon e_start="52131" e_stop="52152"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.859" e_score="0.997"/>
          <exon-intron don_prob="0.996" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.251" acc_prob="0.000" e_score="0.967"/>
          <exon-only e_score="0.773"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="47663" e_stop="48457" e_length="795"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.859">
            <gDNA_intron_boundary i_start="48458" i_stop="48545" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48546" e_stop="48619" e_length="74"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.925">
            <gDNA_intron_boundary i_start="48620" i_stop="48753" i_length="134"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48754" e_stop="48851" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.942" acc_prob="0.983">
            <gDNA_intron_boundary i_start="48852" i_stop="48980" i_length="129"/>
          </intron>
          <exon e_serial="4" e_score="0.967">
            <gDNA_exon_boundary e_start="48981" e_stop="49190" e_length="210"/>
          </exon>
          <intron i_serial="4" don_prob="0.251" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49191" i_stop="52130" i_length="2940"/>
          </intron>
          <exon e_serial="5" e_score="0.773">
            <gDNA_exon_boundary e_start="52131" e_stop="52152" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47663" stop="48259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47664" stop="48291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47664" stop="48281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48076" stop="48457"/>
              <exon start="48546" stop="48619"/>
              <exon start="48754" stop="48851"/>
              <exon start="48981" stop="49162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368385" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48416" stop="48457"/>
              <exon start="48546" stop="48619"/>
              <exon start="48754" stop="48851"/>
              <exon start="48981" stop="49190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236979" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48438" stop="48457"/>
              <exon start="48546" stop="48619"/>
              <exon start="48754" stop="48851"/>
              <exon start="48981" stop="49190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236824" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48440" stop="48457"/>
              <exon start="48546" stop="48619"/>
              <exon start="48754" stop="48851"/>
              <exon start="48981" stop="49099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48787" stop="48851"/>
              <exon start="48981" stop="49190"/>
              <exon start="52131" stop="52152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618675" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTCTTGGAAACTAGGTTGCAGTTATGGTGCAGCTTTGTTTCAGTAATTAAACAGAATTATGATGAGATTTATTATTTGGGAGTACATTTTCCTACCAAAAGATTTAGAATCCTAGGGCTGAGATGGATAGGACTAAGAAAACCCGGGTTGTGAGAAGAACTGTTTGTCAAACTTGGATTTGCTGCTGTAATTCTATGTTTTTTTTTAGAGAATTCTATCAAATAATTCTCAAAAAAAAAATCTCTGTTATTCTTTTTTTTTTATAGATAATTCTATCAAATATGAACTTACGACAGTGATTCATATGGACATGTGCTGTGTGAGGGTTTCTTGGATTTATTATGTTTAGTTGGTATTCAGACTTACAATCCATTTGTATAATTGAATATAAAGGATGTCATGACCTTAATTGTGCCATGGACAGTCCTTAAAATGCTAGGGTTCCCTAGTTTTTTTTTGTAGATGCCTGAAGATACTAAATCTGGATGTTAGATAAAAATATTTCCACTTTTCCTGGGTGCTTTTCATGGTACGTTTTTAGATGTAGTACCTGGTGTTGCTAGCTTTTGCTGGAAGCTTACTTTTCAAATGATTCTGGACTTCTTAAACATGACATGTACCCTTCATCTTAATAATTGTAGATTATATATGCTTGTGCACACTTTTATTTTCTGTACGCATTTAACATGTTGTAAAGTTTTGCTATGCGTATAGTGTCTATTAGTCATTGATCAATTTGCATCCCAACAGGTTCGATTCCTCACCAAAATCTACCATCCGAACATCGATAAG : CTTGGAAGGATATGCCTTGATATTCTCAAAGACAAATGGAGTCCTGCTCTTCAGATCCGTACTGTACTTTTGAG : CATTCAAGCACTTTTGAGTGCTCCAAATCCAGATGATCCACTCTCTGAAAACATTGCTAAGCACTGGAAGTCAAATGAGGTTGAAGCTGTTGAAACGG : CTAAGGAGTGGACACGCCTATATGCTAGTGGTGCATGAAGATATAGCAACGAAATGTTCAAAATAACAAAAATCATGGAATGTAATCAATATTGACTGGCTTATCAATATGAACCTGGATAGCACCCTCCAAATTTGTATAATTGAATGTGACAACCCTTTAGTTTTTTAATGTTCAGGAATGAACTTTGTTACAACAAAACTGGAAATG : AAAAAGAAAACAAATAAAATAT</gDNA_template>
            <first_frame> L  F  L  E  T  R  L  Q  L  W  C  S  F  V  S  V  I  K  Q  N  Y  D  E  I  Y  Y  L  G  V  H  F  P  T  K  R  F  R  I  L  G  L  R  W  I  G  L  R  K  P  G  L  *  E  E  L  F  V  K  L  G  F  A  A  V  I  L  C  F  F  L  E  N  S  I  K  *  F  S  K  K  K  S  L  L  F  F  F  F  Y  R  *  F  Y  Q  I  *  T  Y  D  S  D  S  Y  G  H  V  L  C  E  G  F  L  D  L  L  C  L  V  G  I  Q  T  Y  N  P  F  V  *  L  N  I  K  D  V  M  T  L  I  V  P  W  T  V  L  K  M  L  G  F  P  S  F  F  L  *  M  P  E  D  T  K  S  G  C  *  I  K  I  F  P  L  F  L  G  A  F  H  G  T  F  L  D  V  V  P  G  V  A  S  F  C  W  K  L  T  F  Q  M  I  L  D  F  L  N  M  T  C  T  L  H  L  N  N  C  R  L  Y  M  L  V  H  T  F  I  F  C  T  H  L  T  C  C  K  V  L  L  C  V  *  C  L  L  V  I  D  Q  F  A  S  Q  Q  V  R  F  L  T  K  I  Y  H  P  N  I  D  K  :  L  G  R  I  C  L  D  I  L  K  D  K  W  S  P  A  L  Q  I  R  T  V  L  L  S :   I  Q  A  L  L  S  A  P  N  P  D  D  P  L  S  E  N  I  A  K  H  W  K  S  N  E  V  E  A  V  E  T   : A  K  E  W  T  R  L  Y  A  S  G  A  *  R  Y  S  N  E  M  F  K  I  T  K  I  M  E  C  N  Q  Y  *  L  A  Y  Q  Y  E  P  G  *  H  P  P  N  L  Y  N  *  M  *  Q  P  F  S  F  L  M  F  R  N  E  L  C  Y  N  K  T  G  N   : E  K  E  N  K  *  N   </first_frame>
            <second_frame>  F  S  W  K  L  G  C  S  Y  G  A  A  L  F  Q  *  L  N  R  I  M  M  R  F  I  I  W  E  Y  I  F  L  P  K  D  L  E  S  *  G  *  D  G  *  D  *  E  N  P  G  C  E  K  N  C  L  S  N  L  D  L  L  L  *  F  Y  V  F  F  *  R  I  L  S  N  N  S  Q  K  K  N  L  C  Y  S  F  F  F  I  D  N  S  I  K  Y  E  L  T  T  V  I  H  M  D  M  C  C  V  R  V  S  W  I  Y  Y  V  *  L  V  F  R  L  T  I  H  L  Y  N  *  I  *  R  M  S  *  P  *  L  C  H  G  Q  S  L  K  C  *  G  S  L  V  F  F  C  R  C  L  K  I  L  N  L  D  V  R  *  K  Y  F  H  F  S  W  V  L  F  M  V  R  F  *  M  *  Y  L  V  L  L  A  F  A  G  S  L  L  F  K  *  F  W  T  S  *  T  *  H  V  P  F  I  L  I  I  V  D  Y  I  C  L  C  T  L  L  F  S  V  R  I  *  H  V  V  K  F  C  Y  A  Y  S  V  Y  *  S  L  I  N  L  H  P  N  R  F  D  S  S  P  K  S  T  I  R  T  S  I  S :   L  E  G  Y  A  L  I  F  S  K  T  N  G  V  L  L  F  R  S  V  L  Y  F  *   : A  F  K  H  F  *  V  L  Q  I  Q  M  I  H  S  L  K  T  L  L  S  T  G  S  Q  M  R  L  K  L  L  K  R  :  L  R  S  G  H  A  Y  M  L  V  V  H  E  D  I  A  T  K  C  S  K  *  Q  K  S  W  N  V  I  N  I  D  W  L  I  N  M  N  L  D  S  T  L  Q  I  C  I  I  E  C  D  N  P  L  V  F  *  C  S  G  M  N  F  V  T  T  K  L  E  M  :  K  K  K  T  N  K  I  </second_frame>
            <third_frame>   F  L  G  N  *  V  A  V  M  V  Q  L  C  F  S  N  *  T  E  L  *  *  D  L  L  F  G  S  T  F  S  Y  Q  K  I  *  N  P  R  A  E  M  D  R  T  K  K  T  R  V  V  R  R  T  V  C  Q  T  W  I  C  C  C  N  S  M  F  F  F  R  E  F  Y  Q  I  I  L  K  K  K  I  S  V  I  L  F  F  L  *  I  I  L  S  N  M  N  L  R  Q  *  F  I  W  T  C  A  V  *  G  F  L  G  F  I  M  F  S  W  Y  S  D  L  Q  S  I  C  I  I  E  Y  K  G  C  H  D  L  N  C  A  M  D  S  P  *  N  A  R  V  P  *  F  F  F  V  D  A  *  R  Y  *  I  W  M  L  D  K  N  I  S  T  F  P  G  C  F  S  W  Y  V  F  R  C  S  T  W  C  C  *  L  L  L  E  A  Y  F  S  N  D  S  G  L  L  K  H  D  M  Y  P  S  S  *  *  L  *  I  I  Y  A  C  A  H  F  Y  F  L  Y  A  F  N  M  L  *  S  F  A  M  R  I  V  S  I  S  H  *  S  I  C  I  P  T  G  S  I  P  H  Q  N  L  P  S  E  H  R  *   : A  W  K  D  M  P  *  Y  S  Q  R  Q  M  E  S  C  S  S  D  P  Y  C  T  F  E  :  H  S  S  T  F  E  C  S  K  S  R  *  S  T  L  *  K  H  C  *  A  L  E  V  K  *  G  *  S  C  *  N  G :   *  G  V  D  T  P  I  C  *  W  C  M  K  I  *  Q  R  N  V  Q  N  N  K  N  H  G  M  *  S  I  L  T  G  L  S  I  *  T  W  I  A  P  S  K  F  V  *  L  N  V  T  T  L  *  F  F  N  V  Q  E  *  T  L  L  Q  Q  N  W  K  * :   K  R  K  Q  I  K  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48380" stop="48457"/>
                    <exon start="48546" stop="48619"/>
                    <exon start="48754" stop="48851"/>
                    <exon start="48981" stop="49018"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLLVIDQFASQQVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEVEAVETAKEWTRLYASGA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48158" stop="48379"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKIFPLFLGAFHGTFLDVVPGVASFCWKLTFQMILDFLNMTCTLHLNNCRLYMLVHTFIFCTHLTCCKVLLCV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="47663" e_stop="48457"/>
            <exon e_start="48546" e_stop="48619"/>
            <exon e_start="48754" e_stop="48851"/>
            <exon e_start="48981" e_stop="49253"/>
            <exon e_start="52746" e_stop="52829"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.859" e_score="0.997"/>
          <exon-intron don_prob="0.996" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="47663" e_stop="48457" e_length="795"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.859">
            <gDNA_intron_boundary i_start="48458" i_stop="48545" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48546" e_stop="48619" e_length="74"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.925">
            <gDNA_intron_boundary i_start="48620" i_stop="48753" i_length="134"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48754" e_stop="48851" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.942" acc_prob="0.983">
            <gDNA_intron_boundary i_start="48852" i_stop="48980" i_length="129"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48981" e_stop="49253" e_length="273"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49254" i_stop="52745" i_length="3492"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52746" e_stop="52829" e_length="84"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47663" stop="48259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47664" stop="48291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47664" stop="48281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48076" stop="48457"/>
              <exon start="48546" stop="48619"/>
              <exon start="48754" stop="48851"/>
              <exon start="48981" stop="49162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368385" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48416" stop="48457"/>
              <exon start="48546" stop="48619"/>
              <exon start="48754" stop="48851"/>
              <exon start="48981" stop="49190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236979" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48438" stop="48457"/>
              <exon start="48546" stop="48619"/>
              <exon start="48754" stop="48851"/>
              <exon start="48981" stop="49190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236824" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48440" stop="48457"/>
              <exon start="48546" stop="48619"/>
              <exon start="48754" stop="48851"/>
              <exon start="48981" stop="49099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48994" stop="49253"/>
              <exon start="52746" stop="52829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293976" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTCTTGGAAACTAGGTTGCAGTTATGGTGCAGCTTTGTTTCAGTAATTAAACAGAATTATGATGAGATTTATTATTTGGGAGTACATTTTCCTACCAAAAGATTTAGAATCCTAGGGCTGAGATGGATAGGACTAAGAAAACCCGGGTTGTGAGAAGAACTGTTTGTCAAACTTGGATTTGCTGCTGTAATTCTATGTTTTTTTTTAGAGAATTCTATCAAATAATTCTCAAAAAAAAAATCTCTGTTATTCTTTTTTTTTTATAGATAATTCTATCAAATATGAACTTACGACAGTGATTCATATGGACATGTGCTGTGTGAGGGTTTCTTGGATTTATTATGTTTAGTTGGTATTCAGACTTACAATCCATTTGTATAATTGAATATAAAGGATGTCATGACCTTAATTGTGCCATGGACAGTCCTTAAAATGCTAGGGTTCCCTAGTTTTTTTTTGTAGATGCCTGAAGATACTAAATCTGGATGTTAGATAAAAATATTTCCACTTTTCCTGGGTGCTTTTCATGGTACGTTTTTAGATGTAGTACCTGGTGTTGCTAGCTTTTGCTGGAAGCTTACTTTTCAAATGATTCTGGACTTCTTAAACATGACATGTACCCTTCATCTTAATAATTGTAGATTATATATGCTTGTGCACACTTTTATTTTCTGTACGCATTTAACATGTTGTAAAGTTTTGCTATGCGTATAGTGTCTATTAGTCATTGATCAATTTGCATCCCAACAGGTTCGATTCCTCACCAAAATCTACCATCCGAACATCGATAAG : CTTGGAAGGATATGCCTTGATATTCTCAAAGACAAATGGAGTCCTGCTCTTCAGATCCGTACTGTACTTTTGAG : CATTCAAGCACTTTTGAGTGCTCCAAATCCAGATGATCCACTCTCTGAAAACATTGCTAAGCACTGGAAGTCAAATGAGGTTGAAGCTGTTGAAACGG : CTAAGGAGTGGACACGCCTATATGCTAGTGGTGCATGAAGATATAGCAACGAAATGTTCAAAATAACAAAAATCATGGAATGTAATCAATATTGACTGGCTTATCAATATGAACCTGGATAGCACCCTCCAAATTTGTATAATTGAATGTGACAACCCTTTAGTTTTTTAATGTTCAGGAATGAACTTTGTTACAACAAAACTGGAAATGGTAAGGATTTTGTCACTGCAAAGAGTAGTAAGTGATTCAGATCTGTGGGTTTGGAATTGAAAA : AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> L  F  L  E  T  R  L  Q  L  W  C  S  F  V  S  V  I  K  Q  N  Y  D  E  I  Y  Y  L  G  V  H  F  P  T  K  R  F  R  I  L  G  L  R  W  I  G  L  R  K  P  G  L  *  E  E  L  F  V  K  L  G  F  A  A  V  I  L  C  F  F  L  E  N  S  I  K  *  F  S  K  K  K  S  L  L  F  F  F  F  Y  R  *  F  Y  Q  I  *  T  Y  D  S  D  S  Y  G  H  V  L  C  E  G  F  L  D  L  L  C  L  V  G  I  Q  T  Y  N  P  F  V  *  L  N  I  K  D  V  M  T  L  I  V  P  W  T  V  L  K  M  L  G  F  P  S  F  F  L  *  M  P  E  D  T  K  S  G  C  *  I  K  I  F  P  L  F  L  G  A  F  H  G  T  F  L  D  V  V  P  G  V  A  S  F  C  W  K  L  T  F  Q  M  I  L  D  F  L  N  M  T  C  T  L  H  L  N  N  C  R  L  Y  M  L  V  H  T  F  I  F  C  T  H  L  T  C  C  K  V  L  L  C  V  *  C  L  L  V  I  D  Q  F  A  S  Q  Q  V  R  F  L  T  K  I  Y  H  P  N  I  D  K  :  L  G  R  I  C  L  D  I  L  K  D  K  W  S  P  A  L  Q  I  R  T  V  L  L  S :   I  Q  A  L  L  S  A  P  N  P  D  D  P  L  S  E  N  I  A  K  H  W  K  S  N  E  V  E  A  V  E  T   : A  K  E  W  T  R  L  Y  A  S  G  A  *  R  Y  S  N  E  M  F  K  I  T  K  I  M  E  C  N  Q  Y  *  L  A  Y  Q  Y  E  P  G  *  H  P  P  N  L  Y  N  *  M  *  Q  P  F  S  F  L  M  F  R  N  E  L  C  Y  N  K  T  G  N  G  K  D  F  V  T  A  K  S  S  K  *  F  R  S  V  G  L  E  L  K   : K  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </first_frame>
            <second_frame>  F  S  W  K  L  G  C  S  Y  G  A  A  L  F  Q  *  L  N  R  I  M  M  R  F  I  I  W  E  Y  I  F  L  P  K  D  L  E  S  *  G  *  D  G  *  D  *  E  N  P  G  C  E  K  N  C  L  S  N  L  D  L  L  L  *  F  Y  V  F  F  *  R  I  L  S  N  N  S  Q  K  K  N  L  C  Y  S  F  F  F  I  D  N  S  I  K  Y  E  L  T  T  V  I  H  M  D  M  C  C  V  R  V  S  W  I  Y  Y  V  *  L  V  F  R  L  T  I  H  L  Y  N  *  I  *  R  M  S  *  P  *  L  C  H  G  Q  S  L  K  C  *  G  S  L  V  F  F  C  R  C  L  K  I  L  N  L  D  V  R  *  K  Y  F  H  F  S  W  V  L  F  M  V  R  F  *  M  *  Y  L  V  L  L  A  F  A  G  S  L  L  F  K  *  F  W  T  S  *  T  *  H  V  P  F  I  L  I  I  V  D  Y  I  C  L  C  T  L  L  F  S  V  R  I  *  H  V  V  K  F  C  Y  A  Y  S  V  Y  *  S  L  I  N  L  H  P  N  R  F  D  S  S  P  K  S  T  I  R  T  S  I  S :   L  E  G  Y  A  L  I  F  S  K  T  N  G  V  L  L  F  R  S  V  L  Y  F  *   : A  F  K  H  F  *  V  L  Q  I  Q  M  I  H  S  L  K  T  L  L  S  T  G  S  Q  M  R  L  K  L  L  K  R  :  L  R  S  G  H  A  Y  M  L  V  V  H  E  D  I  A  T  K  C  S  K  *  Q  K  S  W  N  V  I  N  I  D  W  L  I  N  M  N  L  D  S  T  L  Q  I  C  I  I  E  C  D  N  P  L  V  F  *  C  S  G  M  N  F  V  T  T  K  L  E  M  V  R  I  L  S  L  Q  R  V  V  S  D  S  D  L  W  V  W  N  *  K  :  N  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </second_frame>
            <third_frame>   F  L  G  N  *  V  A  V  M  V  Q  L  C  F  S  N  *  T  E  L  *  *  D  L  L  F  G  S  T  F  S  Y  Q  K  I  *  N  P  R  A  E  M  D  R  T  K  K  T  R  V  V  R  R  T  V  C  Q  T  W  I  C  C  C  N  S  M  F  F  F  R  E  F  Y  Q  I  I  L  K  K  K  I  S  V  I  L  F  F  L  *  I  I  L  S  N  M  N  L  R  Q  *  F  I  W  T  C  A  V  *  G  F  L  G  F  I  M  F  S  W  Y  S  D  L  Q  S  I  C  I  I  E  Y  K  G  C  H  D  L  N  C  A  M  D  S  P  *  N  A  R  V  P  *  F  F  F  V  D  A  *  R  Y  *  I  W  M  L  D  K  N  I  S  T  F  P  G  C  F  S  W  Y  V  F  R  C  S  T  W  C  C  *  L  L  L  E  A  Y  F  S  N  D  S  G  L  L  K  H  D  M  Y  P  S  S  *  *  L  *  I  I  Y  A  C  A  H  F  Y  F  L  Y  A  F  N  M  L  *  S  F  A  M  R  I  V  S  I  S  H  *  S  I  C  I  P  T  G  S  I  P  H  Q  N  L  P  S  E  H  R  *   : A  W  K  D  M  P  *  Y  S  Q  R  Q  M  E  S  C  S  S  D  P  Y  C  T  F  E  :  H  S  S  T  F  E  C  S  K  S  R  *  S  T  L  *  K  H  C  *  A  L  E  V  K  *  G  *  S  C  *  N  G :   *  G  V  D  T  P  I  C  *  W  C  M  K  I  *  Q  R  N  V  Q  N  N  K  N  H  G  M  *  S  I  L  T  G  L  S  I  *  T  W  I  A  P  S  K  F  V  *  L  N  V  T  T  L  *  F  F  N  V  Q  E  *  T  L  L  Q  Q  N  W  K  W  *  G  F  C  H  C  K  E  *  *  V  I  Q  I  C  G  F  G  I  E  K :   I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48380" stop="48457"/>
                    <exon start="48546" stop="48619"/>
                    <exon start="48754" stop="48851"/>
                    <exon start="48981" stop="49018"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLLVIDQFASQQVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEVEAVETAKEWTRLYASGA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48158" stop="48379"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKIFPLFLGAFHGTFLDVVPGVASFCWKLTFQMILDFLNMTCTLHLNNCRLYMLVHTFIFCTHLTCCKVLLCV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="47663" e_stop="48457"/>
            <exon e_start="48546" e_stop="48619"/>
            <exon e_start="48754" e_stop="48851"/>
            <exon e_start="48981" e_stop="49217"/>
            <exon e_start="50016" e_stop="50032"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.859" e_score="0.997"/>
          <exon-intron don_prob="0.996" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.889" e_score="0.967"/>
          <exon-only e_score="0.588"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="47663" e_stop="48457" e_length="795"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.859">
            <gDNA_intron_boundary i_start="48458" i_stop="48545" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48546" e_stop="48619" e_length="74"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.925">
            <gDNA_intron_boundary i_start="48620" i_stop="48753" i_length="134"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48754" e_stop="48851" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.942" acc_prob="0.983">
            <gDNA_intron_boundary i_start="48852" i_stop="48980" i_length="129"/>
          </intron>
          <exon e_serial="4" e_score="0.967">
            <gDNA_exon_boundary e_start="48981" e_stop="49217" e_length="237"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.889">
            <gDNA_intron_boundary i_start="49218" i_stop="50015" i_length="798"/>
          </intron>
          <exon e_serial="5" e_score="0.588">
            <gDNA_exon_boundary e_start="50016" e_stop="50032" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47663" stop="48259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47664" stop="48291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47664" stop="48281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48076" stop="48457"/>
              <exon start="48546" stop="48619"/>
              <exon start="48754" stop="48851"/>
              <exon start="48981" stop="49162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368385" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48416" stop="48457"/>
              <exon start="48546" stop="48619"/>
              <exon start="48754" stop="48851"/>
              <exon start="48981" stop="49190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236979" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48438" stop="48457"/>
              <exon start="48546" stop="48619"/>
              <exon start="48754" stop="48851"/>
              <exon start="48981" stop="49190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236824" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48440" stop="48457"/>
              <exon start="48546" stop="48619"/>
              <exon start="48754" stop="48851"/>
              <exon start="48981" stop="49099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48809" stop="48851"/>
              <exon start="48981" stop="49217"/>
              <exon start="50016" stop="50032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222801" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48809" stop="48851"/>
              <exon start="48981" stop="49217"/>
              <exon start="50016" stop="50032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222211" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTCTTGGAAACTAGGTTGCAGTTATGGTGCAGCTTTGTTTCAGTAATTAAACAGAATTATGATGAGATTTATTATTTGGGAGTACATTTTCCTACCAAAAGATTTAGAATCCTAGGGCTGAGATGGATAGGACTAAGAAAACCCGGGTTGTGAGAAGAACTGTTTGTCAAACTTGGATTTGCTGCTGTAATTCTATGTTTTTTTTTAGAGAATTCTATCAAATAATTCTCAAAAAAAAAATCTCTGTTATTCTTTTTTTTTTATAGATAATTCTATCAAATATGAACTTACGACAGTGATTCATATGGACATGTGCTGTGTGAGGGTTTCTTGGATTTATTATGTTTAGTTGGTATTCAGACTTACAATCCATTTGTATAATTGAATATAAAGGATGTCATGACCTTAATTGTGCCATGGACAGTCCTTAAAATGCTAGGGTTCCCTAGTTTTTTTTTGTAGATGCCTGAAGATACTAAATCTGGATGTTAGATAAAAATATTTCCACTTTTCCTGGGTGCTTTTCATGGTACGTTTTTAGATGTAGTACCTGGTGTTGCTAGCTTTTGCTGGAAGCTTACTTTTCAAATGATTCTGGACTTCTTAAACATGACATGTACCCTTCATCTTAATAATTGTAGATTATATATGCTTGTGCACACTTTTATTTTCTGTACGCATTTAACATGTTGTAAAGTTTTGCTATGCGTATAGTGTCTATTAGTCATTGATCAATTTGCATCCCAACAGGTTCGATTCCTCACCAAAATCTACCATCCGAACATCGATAAG : CTTGGAAGGATATGCCTTGATATTCTCAAAGACAAATGGAGTCCTGCTCTTCAGATCCGTACTGTACTTTTGAG : CATTCAAGCACTTTTGAGTGCTCCAAATCCAGATGATCCACTCTCTGAAAACATTGCTAAGCACTGGAAGTCAAATGAGGTTGAAGCTGTTGAAACGG : CTAAGGAGTGGACACGCCTATATGCTAGTGGTGCATGAAGATATAGCAACGAAATGTTCAAAATAACAAAAATCATGGAATGTAATCAATATTGACTGGCTTATCAATATGAACCTGGATAGCACCCTCCAAATTTGTATAATTGAATGTGACAACCCTTTAGTTTTTTAATGTTCAGGAATGAACTTTGTTACAACAAAACTGGAAATGGTAAGGATTTTGTCACTGCAAAGAGTA : ATATTAGAAACAACAAC</gDNA_template>
            <first_frame> L  F  L  E  T  R  L  Q  L  W  C  S  F  V  S  V  I  K  Q  N  Y  D  E  I  Y  Y  L  G  V  H  F  P  T  K  R  F  R  I  L  G  L  R  W  I  G  L  R  K  P  G  L  *  E  E  L  F  V  K  L  G  F  A  A  V  I  L  C  F  F  L  E  N  S  I  K  *  F  S  K  K  K  S  L  L  F  F  F  F  Y  R  *  F  Y  Q  I  *  T  Y  D  S  D  S  Y  G  H  V  L  C  E  G  F  L  D  L  L  C  L  V  G  I  Q  T  Y  N  P  F  V  *  L  N  I  K  D  V  M  T  L  I  V  P  W  T  V  L  K  M  L  G  F  P  S  F  F  L  *  M  P  E  D  T  K  S  G  C  *  I  K  I  F  P  L  F  L  G  A  F  H  G  T  F  L  D  V  V  P  G  V  A  S  F  C  W  K  L  T  F  Q  M  I  L  D  F  L  N  M  T  C  T  L  H  L  N  N  C  R  L  Y  M  L  V  H  T  F  I  F  C  T  H  L  T  C  C  K  V  L  L  C  V  *  C  L  L  V  I  D  Q  F  A  S  Q  Q  V  R  F  L  T  K  I  Y  H  P  N  I  D  K  :  L  G  R  I  C  L  D  I  L  K  D  K  W  S  P  A  L  Q  I  R  T  V  L  L  S :   I  Q  A  L  L  S  A  P  N  P  D  D  P  L  S  E  N  I  A  K  H  W  K  S  N  E  V  E  A  V  E  T   : A  K  E  W  T  R  L  Y  A  S  G  A  *  R  Y  S  N  E  M  F  K  I  T  K  I  M  E  C  N  Q  Y  *  L  A  Y  Q  Y  E  P  G  *  H  P  P  N  L  Y  N  *  M  *  Q  P  F  S  F  L  M  F  R  N  E  L  C  Y  N  K  T  G  N  G  K  D  F  V  T  A  K  S   : N  I  R  N  N  N </first_frame>
            <second_frame>  F  S  W  K  L  G  C  S  Y  G  A  A  L  F  Q  *  L  N  R  I  M  M  R  F  I  I  W  E  Y  I  F  L  P  K  D  L  E  S  *  G  *  D  G  *  D  *  E  N  P  G  C  E  K  N  C  L  S  N  L  D  L  L  L  *  F  Y  V  F  F  *  R  I  L  S  N  N  S  Q  K  K  N  L  C  Y  S  F  F  F  I  D  N  S  I  K  Y  E  L  T  T  V  I  H  M  D  M  C  C  V  R  V  S  W  I  Y  Y  V  *  L  V  F  R  L  T  I  H  L  Y  N  *  I  *  R  M  S  *  P  *  L  C  H  G  Q  S  L  K  C  *  G  S  L  V  F  F  C  R  C  L  K  I  L  N  L  D  V  R  *  K  Y  F  H  F  S  W  V  L  F  M  V  R  F  *  M  *  Y  L  V  L  L  A  F  A  G  S  L  L  F  K  *  F  W  T  S  *  T  *  H  V  P  F  I  L  I  I  V  D  Y  I  C  L  C  T  L  L  F  S  V  R  I  *  H  V  V  K  F  C  Y  A  Y  S  V  Y  *  S  L  I  N  L  H  P  N  R  F  D  S  S  P  K  S  T  I  R  T  S  I  S :   L  E  G  Y  A  L  I  F  S  K  T  N  G  V  L  L  F  R  S  V  L  Y  F  *   : A  F  K  H  F  *  V  L  Q  I  Q  M  I  H  S  L  K  T  L  L  S  T  G  S  Q  M  R  L  K  L  L  K  R  :  L  R  S  G  H  A  Y  M  L  V  V  H  E  D  I  A  T  K  C  S  K  *  Q  K  S  W  N  V  I  N  I  D  W  L  I  N  M  N  L  D  S  T  L  Q  I  C  I  I  E  C  D  N  P  L  V  F  *  C  S  G  M  N  F  V  T  T  K  L  E  M  V  R  I  L  S  L  Q  R  V  :  I  L  E  T  T   </second_frame>
            <third_frame>   F  L  G  N  *  V  A  V  M  V  Q  L  C  F  S  N  *  T  E  L  *  *  D  L  L  F  G  S  T  F  S  Y  Q  K  I  *  N  P  R  A  E  M  D  R  T  K  K  T  R  V  V  R  R  T  V  C  Q  T  W  I  C  C  C  N  S  M  F  F  F  R  E  F  Y  Q  I  I  L  K  K  K  I  S  V  I  L  F  F  L  *  I  I  L  S  N  M  N  L  R  Q  *  F  I  W  T  C  A  V  *  G  F  L  G  F  I  M  F  S  W  Y  S  D  L  Q  S  I  C  I  I  E  Y  K  G  C  H  D  L  N  C  A  M  D  S  P  *  N  A  R  V  P  *  F  F  F  V  D  A  *  R  Y  *  I  W  M  L  D  K  N  I  S  T  F  P  G  C  F  S  W  Y  V  F  R  C  S  T  W  C  C  *  L  L  L  E  A  Y  F  S  N  D  S  G  L  L  K  H  D  M  Y  P  S  S  *  *  L  *  I  I  Y  A  C  A  H  F  Y  F  L  Y  A  F  N  M  L  *  S  F  A  M  R  I  V  S  I  S  H  *  S  I  C  I  P  T  G  S  I  P  H  Q  N  L  P  S  E  H  R  *   : A  W  K  D  M  P  *  Y  S  Q  R  Q  M  E  S  C  S  S  D  P  Y  C  T  F  E  :  H  S  S  T  F  E  C  S  K  S  R  *  S  T  L  *  K  H  C  *  A  L  E  V  K  *  G  *  S  C  *  N  G :   *  G  V  D  T  P  I  C  *  W  C  M  K  I  *  Q  R  N  V  Q  N  N  K  N  H  G  M  *  S  I  L  T  G  L  S  I  *  T  W  I  A  P  S  K  F  V  *  L  N  V  T  T  L  *  F  F  N  V  Q  E  *  T  L  L  Q  Q  N  W  K  W  *  G  F  C  H  C  K  E  * :   Y  *  K  Q  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48380" stop="48457"/>
                    <exon start="48546" stop="48619"/>
                    <exon start="48754" stop="48851"/>
                    <exon start="48981" stop="49018"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLLVIDQFASQQVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEVEAVETAKEWTRLYASGA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48158" stop="48379"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKIFPLFLGAFHGTFLDVVPGVASFCWKLTFQMILDFLNMTCTLHLNNCRLYMLVHTFIFCTHLTCCKVLLCV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="49191" PGL_stop="48979"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49191" e_stop="48979"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="49191" e_stop="48979" e_length="213"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49191" stop="48979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218866" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCATTTCCAGTTTTGTTGTAACAAAGTTCATTCCTGAACATTAAAAAACTAAAGGGTTGTCACATTCAATTATACAAATTTGGAGGGTGCTATCCAGGTTCATATTGATAAGCCAGTCAATATTGATTACATTCCATGATTTTTGTTATTTTGAACATTTCGTTGCTATATCTTCATGCACCACTAGCATATAGGCGTGTCCACTCCTTAGCT</gDNA_template>
            <first_frame> P  F  P  V  L  L  *  Q  S  S  F  L  N  I  K  K  L  K  G  C  H  I  Q  L  Y  K  F  G  G  C  Y  P  G  S  Y  *  *  A  S  Q  Y  *  L  H  S  M  I  F  V  I  L  N  I  S  L  L  Y  L  H  A  P  L  A  Y  R  R  V  H  S  L  A </first_frame>
            <second_frame>  H  F  Q  F  C  C  N  K  V  H  S  *  T  L  K  N  *  R  V  V  T  F  N  Y  T  N  L  E  G  A  I  Q  V  H  I  D  K  P  V  N  I  D  Y  I  P  *  F  L  L  F  *  T  F  R  C  Y  I  F  M  H  H  *  H  I  G  V  S  T  P  *   </second_frame>
            <third_frame>   I  S  S  F  V  V  T  K  F  I  P  E  H  *  K  T  K  G  L  S  H  S  I  I  Q  I  W  R  V  L  S  R  F  I  L  I  S  Q  S  I  L  I  T  F  H  D  F  C  Y  F  E  H  F  V  A  I  S  S  C  T  T  S  I  *  A  C  P  L  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0079F09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="55205" PGL_stop="62088"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55205" e_stop="55603"/>
            <exon e_start="56349" e_stop="56408"/>
            <exon e_start="56812" e_stop="56868"/>
            <exon e_start="56962" e_stop="57003"/>
            <exon e_start="58527" e_stop="58598"/>
            <exon e_start="58977" e_stop="59033"/>
            <exon e_start="59548" e_stop="59624"/>
            <exon e_start="60708" e_stop="60789"/>
            <exon e_start="60934" e_stop="61050"/>
            <exon e_start="61383" e_stop="61504"/>
            <exon e_start="61600" e_stop="61669"/>
            <exon e_start="61763" e_stop="62088"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.917"/>
          <exon-intron don_prob="0.984" acc_prob="0.430" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.508" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.848" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.808" e_score="1.000"/>
          <exon-intron don_prob="0.631" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.899" e_score="0.948"/>
          <exon-intron don_prob="0.952" acc_prob="0.997" e_score="0.976"/>
          <exon-intron don_prob="0.983" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.784" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="55205" e_stop="55603" e_length="399"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="55604" i_stop="56348" i_length="745"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56349" e_stop="56408" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.430">
            <gDNA_intron_boundary i_start="56409" i_stop="56811" i_length="403"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56812" e_stop="56868" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.508">
            <gDNA_intron_boundary i_start="56869" i_stop="56961" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56962" e_stop="57003" e_length="42"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.848">
            <gDNA_intron_boundary i_start="57004" i_stop="58526" i_length="1523"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="58527" e_stop="58598" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.808">
            <gDNA_intron_boundary i_start="58599" i_stop="58976" i_length="378"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="58977" e_stop="59033" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.631" acc_prob="0.999">
            <gDNA_intron_boundary i_start="59034" i_stop="59547" i_length="514"/>
          </intron>
          <exon e_serial="7" e_score="0.948">
            <gDNA_exon_boundary e_start="59548" e_stop="59624" e_length="77"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.899">
            <gDNA_intron_boundary i_start="59625" i_stop="60707" i_length="1083"/>
          </intron>
          <exon e_serial="8" e_score="0.976">
            <gDNA_exon_boundary e_start="60708" e_stop="60789" e_length="82"/>
          </exon>
          <intron i_serial="8" don_prob="0.952" acc_prob="0.997">
            <gDNA_intron_boundary i_start="60790" i_stop="60933" i_length="144"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="60934" e_stop="61050" e_length="117"/>
          </exon>
          <intron i_serial="9" don_prob="0.983" acc_prob="0.992">
            <gDNA_intron_boundary i_start="61051" i_stop="61382" i_length="332"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="61383" e_stop="61504" e_length="122"/>
          </exon>
          <intron i_serial="10" don_prob="0.784" acc_prob="0.998">
            <gDNA_intron_boundary i_start="61505" i_stop="61599" i_length="95"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="61600" e_stop="61669" e_length="70"/>
          </exon>
          <intron i_serial="11" don_prob="0.945" acc_prob="0.999">
            <gDNA_intron_boundary i_start="61670" i_stop="61762" i_length="93"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="61763" e_stop="62088" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55205" stop="55603"/>
              <exon start="56349" stop="56378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55236" stop="55487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55249" stop="55603"/>
              <exon start="56349" stop="56408"/>
              <exon start="56812" stop="56868"/>
              <exon start="56962" stop="57003"/>
              <exon start="58527" stop="58598"/>
              <exon start="58977" stop="59033"/>
              <exon start="59548" stop="59588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55249" stop="55500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55261" stop="55603"/>
              <exon start="56349" stop="56408"/>
              <exon start="56812" stop="56868"/>
              <exon start="56962" stop="57003"/>
              <exon start="58527" stop="58580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58539" stop="58598"/>
              <exon start="58977" stop="59033"/>
              <exon start="59548" stop="59624"/>
              <exon start="60708" stop="60789"/>
              <exon start="60934" stop="61050"/>
              <exon start="61383" stop="61504"/>
              <exon start="61600" stop="61669"/>
              <exon start="61763" stop="61966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589633" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60742" stop="60789"/>
              <exon start="60934" stop="61050"/>
              <exon start="61383" stop="61504"/>
              <exon start="61600" stop="61669"/>
              <exon start="61763" stop="62034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60999" stop="61050"/>
              <exon start="61383" stop="61504"/>
              <exon start="61600" stop="61669"/>
              <exon start="61763" stop="62088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308517" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAGTTGGGAATCAGAACCAACAAATACTATCTTTAATGGGCGGGAAAAGGAATCCCTAAAATCTCCCATTATTTACTCTTAAATGCTAAGCATAAACATCTCCAGCTTCTTCTTCAAAGTTCCTTCCAGAACCAACAATTTTAACCCTAGATTAATTCTACTATTTTTTTCTCCAATGGCGTCTTCTACAAAAGTCACAGTTGAGTATGCGAAATCCGGTCGATCGTCATGTAAGAAATGCGATGAGAAGATTCCGGCGAAATCAGTAAGGCTGGGATTAGTGTCAAAACACCCTCAAGGCTTTGACCAGACGAAATGGCATCATCTCGATTGTTTCCCTTTCAATTCTGATTTCGTTTCCTCTGTGGAAGACATCGCTGGTTTCTCATTGCTCCAG : AACAAAGATAAAGAAACTTTGGAGAAACTGATTAGCACCGAGATTGCAACTTTGCAGAAG : GTTTCTGATGCAGACTCAGATAAGATTGACAGAAAACAAAAGGAAACCCGTGCACAG : GAAGACTCGGAGCACGAACTGAGCAAGCAAAAGCGACTAAAG : CTGTCGGCCACTGAAGAGGAACCTGTGTTGGAGATAGCATTCTCCATTTCTGATGTGAGGGACACTTATAAG : GATGCTAAATTGTTACCAAAATGGAGGGCGTTTCAGACTATTATATATCTTGAACAG : GGTGATGGGCGTCATGCTTCAAGTAAAATTGCCGCCTTTGATTTTGATGGTTGTCTTGCAAATACAAATGTGAGAAG : AGTTGGTGCAGATGCTTGGTCTCTGATGCATCCTTCAATCCCAGAGAAGCTGCAGAGCTTGTACAATGAAGGCTATAAGCTG : GTAATTTTTACCAATGAATCCAACATTGAGCGGTGGAAAAAAAGTAGGCAGGCAGCTGTGGACTCTAAAATTGGACGACTTGAACAATTTATCAAAGTTGCTGGTGTTCCAATTCAG : GTTTTCATCGCTTGTGGCTTGAGTAAGATCAAGCCAGAAGATCCATTTCGCAAGCCTAAGACCGGGATGTGGAATATAATGAAAAAGCAGTTCAATTCTGGAGTTCCCATAGACATGGACCA : GTCTTTCTATGTTGGTGATGCTGCTGGCAGACAAGGTGACCACAGTGATGCTGATATTAGATTTGCGCAG : GCGATTGGACTAAAATTTTATGTTCCAGAGGAATTCTTTGAGAAGGAAACTTGACAATGACAATGAGCATTTTGTTGTGTAACATCTACTACAGTAGAAAGAAACTGTCTGAGCTGAAGTAGAAGGAACATGCGTTCAACTCTTTCCCAGCTAAGGGGTTGACATTTGTGGAAATAGTTCTTTCCATATCTACCTTGGATTCTTATTTAAATTTATCGCCTTTTTCATCCTTTTGGTGAGATTTCTGCAAATACATACCTCAGTCCTTTTTGCTTTGTAGACGGATCAAAGTTTGCATGAAACCATTTATCCTTCAAAATTATGAA</gDNA_template>
            <first_frame> R  S  W  E  S  E  P  T  N  T  I  F  N  G  R  E  K  E  S  L  K  S  P  I  I  Y  S  *  M  L  S  I  N  I  S  S  F  F  F  K  V  P  S  R  T  N  N  F  N  P  R  L  I  L  L  F  F  S  P  M  A  S  S  T  K  V  T  V  E  Y  A  K  S  G  R  S  S  C  K  K  C  D  E  K  I  P  A  K  S  V  R  L  G  L  V  S  K  H  P  Q  G  F  D  Q  T  K  W  H  H  L  D  C  F  P  F  N  S  D  F  V  S  S  V  E  D  I  A  G  F  S  L  L  Q  :  N  K  D  K  E  T  L  E  K  L  I  S  T  E  I  A  T  L  Q  K  :  V  S  D  A  D  S  D  K  I  D  R  K  Q  K  E  T  R  A  Q  :  E  D  S  E  H  E  L  S  K  Q  K  R  L  K  :  L  S  A  T  E  E  E  P  V  L  E  I  A  F  S  I  S  D  V  R  D  T  Y  K  :  D  A  K  L  L  P  K  W  R  A  F  Q  T  I  I  Y  L  E  Q  :  G  D  G  R  H  A  S  S  K  I  A  A  F  D  F  D  G  C  L  A  N  T  N  V  R  R :   V  G  A  D  A  W  S  L  M  H  P  S  I  P  E  K  L  Q  S  L  Y  N  E  G  Y  K  L  :  V  I  F  T  N  E  S  N  I  E  R  W  K  K  S  R  Q  A  A  V  D  S  K  I  G  R  L  E  Q  F  I  K  V  A  G  V  P  I  Q  :  V  F  I  A  C  G  L  S  K  I  K  P  E  D  P  F  R  K  P  K  T  G  M  W  N  I  M  K  K  Q  F  N  S  G  V  P  I  D  M  D  Q :   S  F  Y  V  G  D  A  A  G  R  Q  G  D  H  S  D  A  D  I  R  F  A  Q  :  A  I  G  L  K  F  Y  V  P  E  E  F  F  E  K  E  T  *  Q  *  Q  *  A  F  C  C  V  T  S  T  T  V  E  R  N  C  L  S  *  S  R  R  N  M  R  S  T  L  S  Q  L  R  G  *  H  L  W  K  *  F  F  P  Y  L  P  W  I  L  I  *  I  Y  R  L  F  H  P  F  G  E  I  S  A  N  T  Y  L  S  P  F  C  F  V  D  G  S  K  F  A  *  N  H  L  S  F  K  I  M   </first_frame>
            <second_frame>  E  V  G  N  Q  N  Q  Q  I  L  S  L  M  G  G  K  R  N  P  *  N  L  P  L  F  T  L  K  C  *  A  *  T  S  P  A  S  S  S  K  F  L  P  E  P  T  I  L  T  L  D  *  F  Y  Y  F  F  L  Q  W  R  L  L  Q  K  S  Q  L  S  M  R  N  P  V  D  R  H  V  R  N  A  M  R  R  F  R  R  N  Q  *  G  W  D  *  C  Q  N  T  L  K  A  L  T  R  R  N  G  I  I  S  I  V  S  L  S  I  L  I  S  F  P  L  W  K  T  S  L  V  S  H  C  S  R :   T  K  I  K  K  L  W  R  N  *  L  A  P  R  L  Q  L  C  R  R :   F  L  M  Q  T  Q  I  R  L  T  E  N  K  R  K  P  V  H  R :   K  T  R  S  T  N  *  A  S  K  S  D  *  S :   C  R  P  L  K  R  N  L  C  W  R  *  H  S  P  F  L  M  *  G  T  L  I  R :   M  L  N  C  Y  Q  N  G  G  R  F  R  L  L  Y  I  L  N  R :   V  M  G  V  M  L  Q  V  K  L  P  P  L  I  L  M  V  V  L  Q  I  Q  M  *  E   : E  L  V  Q  M  L  G  L  *  C  I  L  Q  S  Q  R  S  C  R  A  C  T  M  K  A  I  S  W :   *  F  L  P  M  N  P  T  L  S  G  G  K  K  V  G  R  Q  L  W  T  L  K  L  D  D  L  N  N  L  S  K  L  L  V  F  Q  F  R :   F  S  S  L  V  A  *  V  R  S  S  Q  K  I  H  F  A  S  L  R  P  G  C  G  I  *  *  K  S  S  S  I  L  E  F  P  *  T  W  T   : S  L  S  M  L  V  M  L  L  A  D  K  V  T  T  V  M  L  I  L  D  L  R  R :   R  L  D  *  N  F  M  F  Q  R  N  S  L  R  R  K  L  D  N  D  N  E  H  F  V  V  *  H  L  L  Q  *  K  E  T  V  *  A  E  V  E  G  T  C  V  Q  L  F  P  S  *  G  V  D  I  C  G  N  S  S  F  H  I  Y  L  G  F  L  F  K  F  I  A  F  F  I  L  L  V  R  F  L  Q  I  H  T  S  V  L  F  A  L  *  T  D  Q  S  L  H  E  T  I  Y  P  S  K  L  *  </second_frame>
            <third_frame>   K  L  G  I  R  T  N  K  Y  Y  L  *  W  A  G  K  G  I  P  K  I  S  H  Y  L  L  L  N  A  K  H  K  H  L  Q  L  L  L  Q  S  S  F  Q  N  Q  Q  F  *  P  *  I  N  S  T  I  F  F  S  N  G  V  F  Y  K  S  H  S  *  V  C  E  I  R  S  I  V  M  *  E  M  R  *  E  D  S  G  E  I  S  K  A  G  I  S  V  K  T  P  S  R  L  *  P  D  E  M  A  S  S  R  L  F  P  F  Q  F  *  F  R  F  L  C  G  R  H  R  W  F  L  I  A  P   : E  Q  R  *  R  N  F  G  E  T  D  *  H  R  D  C  N  F  A  E   : G  F  *  C  R  L  R  *  D  *  Q  K  T  K  G  N  P  C  T   : G  R  L  G  A  R  T  E  Q  A  K  A  T  K   : A  V  G  H  *  R  G  T  C  V  G  D  S  I  L  H  F  *  C  E  G  H  L  *   : G  C  *  I  V  T  K  M  E  G  V  S  D  Y  Y  I  S  *  T   : G  *  W  A  S  C  F  K  *  N  C  R  L  *  F  *  W  L  S  C  K  Y  K  C  E  K  :  S  W  C  R  C  L  V  S  D  A  S  F  N  P  R  E  A  A  E  L  V  Q  *  R  L  *  A   : G  N  F  Y  Q  *  I  Q  H  *  A  V  E  K  K  *  A  G  S  C  G  L  *  N  W  T  T  *  T  I  Y  Q  S  C  W  C  S  N  S   : G  F  H  R  L  W  L  E  *  D  Q  A  R  R  S  I  S  Q  A  *  D  R  D  V  E  Y  N  E  K  A  V  Q  F  W  S  S  H  R  H  G  P  :  V  F  L  C  W  *  C  C  W  Q  T  R  *  P  Q  *  C  *  Y  *  I  C  A   : G  D  W  T  K  I  L  C  S  R  G  I  L  *  E  G  N  L  T  M  T  M  S  I  L  L  C  N  I  Y  Y  S  R  K  K  L  S  E  L  K  *  K  E  H  A  F  N  S  F  P  A  K  G  L  T  F  V  E  I  V  L  S  I  S  T  L  D  S  Y  L  N  L  S  P  F  S  S  F  W  *  D  F  C  K  Y  I  P  Q  S  F  L  L  C  R  R  I  K  V  C  M  K  P  F  I  L  Q  N  Y  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55289" stop="55603"/>
                    <exon start="56349" stop="56408"/>
                    <exon start="56812" stop="56868"/>
                    <exon start="56962" stop="57003"/>
                    <exon start="58527" stop="58598"/>
                    <exon start="58977" stop="59033"/>
                    <exon start="59548" stop="59624"/>
                    <exon start="60708" stop="60789"/>
                    <exon start="60934" stop="61050"/>
                    <exon start="61383" stop="61504"/>
                    <exon start="61600" stop="61669"/>
                    <exon start="61763" stop="61816"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1122</number_coding_nucleotides>
                  <number_encoded_amino_acids>374</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLSINISSFFFKVPSRTNNFNPRLILLFFSPMASSTKVTVEYAKSGRSSCKKCDEKIPAKSVRLGLVSKHPQGFDQTKWHHLDCFPFNSDFVSSVEDIAGFSLLQNKDKETLEKLISTEIATLQKVSDADSDKIDRKQKETRAQEDSEHELSKQKRLKLSATEEEPVLEIAFSISDVRDTYKDAKLLPKWRAFQTIIYLEQGDGRHASSKIAAFDFDGCLANTNVRRVGADAWSLMHPSIPEKLQSLYNEGYKLVIFTNESNIERWKKSRQAAVDSKIGRLEQFIKVAGVPIQVFIACGLSKIKPEDPFRKPKTGMWNIMKKQFNSGVPIDMDQSFYVGDAAGRQGDHSDADIRFAQAIGLKFYVPEEFFEKET*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="65150" PGL_stop="67068"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65150" e_stop="65373"/>
            <exon e_start="66003" e_stop="66137"/>
            <exon e_start="66308" e_stop="66487"/>
            <exon e_start="66728" e_stop="66789"/>
            <exon e_start="66911" e_stop="67068"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.788" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.867" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.718" e_score="1.000"/>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65150" e_stop="65373" e_length="224"/>
          </exon>
          <intron i_serial="1" don_prob="0.788" acc_prob="0.967">
            <gDNA_intron_boundary i_start="65374" i_stop="66002" i_length="629"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66003" e_stop="66137" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="66138" i_stop="66307" i_length="170"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="66308" e_stop="66487" e_length="180"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.867">
            <gDNA_intron_boundary i_start="66488" i_stop="66727" i_length="240"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="66728" e_stop="66789" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.984" acc_prob="0.718">
            <gDNA_intron_boundary i_start="66790" i_stop="66910" i_length="121"/>
          </intron>
          <exon e_serial="5" e_score="0.949">
            <gDNA_exon_boundary e_start="66911" e_stop="67068" e_length="158"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65150" stop="65373"/>
              <exon start="66003" stop="66137"/>
              <exon start="66308" stop="66487"/>
              <exon start="66728" stop="66789"/>
              <exon start="66911" stop="67068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212647" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGCATTAGCCAACCGTTCGCTTGTTCTCATTCTACATTGGTCCGAAGGATCCGACCCGGTAGGAAACCGGGTGAAGATTGTACCTGATCTCTCTCCGATCGAGGCTGAGTATATATCTGCGATCGAGTGGTTAGTGTTTGATGATATCAAAGTTCTAGCTTTGGGCACTTCTCGTGGGTATTTGTTGATTTATTCTCTCCGTGGTGATCTGATTCATAAACAG : ATAGTAAGCCCTGGAAAGATTCTTAGATTGAGAGTCCGTGATACCAAGAGAGATCTAACCCAAGATGCATCATCAGAAGAGGTCTGTGTTGTTATGTCAGGTGTTATTGCTCGGTTTGATGGATCAGATATTCAG : AATATGCTTCAGAGGTGGTTTAGAGAAAGACACTCTCAGTTCTGGGATGAGACAGAATCTGAAAATTCTGCAGATACTTTTGGGAGGCTTCCATACCAGCTATGGAATGTTAATAAATATGGTTCTTGTGTTGATGCTGCTATCACTGGTCTGATGCCCCCTCCTCTGCTGGAGCTACAG : TCAAGTCAGCGTTATTATTGTGCAATCACTGTTGGAGCTGACGCTGTGATTTCTGCTTATCG : ACTTTCTGTAGACCGAAGCAGATCAATAGTAGGGGCTATTCTCTCCAAGGTTGTGCCTGCGACTTTTTCAACAATAACTTCAATCTCAAAAATGTTATGGAGAAGTGATCCATCTCCTACAAAAAGACCAGAACCAAAGCCTCAGCCTTTTGCTCGAG</gDNA_template>
            <first_frame> L  H  *  P  T  V  R  L  F  S  F  Y  I  G  P  K  D  P  T  R  *  E  T  G  *  R  L  Y  L  I  S  L  R  S  R  L  S  I  Y  L  R  S  S  G  *  C  L  M  I  S  K  F  *  L  W  A  L  L  V  G  I  C  *  F  I  L  S  V  V  I  *  F  I  N  R :   *  *  A  L  E  R  F  L  D  *  E  S  V  I  P  R  E  I  *  P  K  M  H  H  Q  K  R  S  V  L  L  C  Q  V  L  L  L  G  L  M  D  Q  I  F  R :   I  C  F  R  G  G  L  E  K  D  T  L  S  S  G  M  R  Q  N  L  K  I  L  Q  I  L  L  G  G  F  H  T  S  Y  G  M  L  I  N  M  V  L  V  L  M  L  L  S  L  V  *  C  P  L  L  C  W  S  Y  S :   Q  V  S  V  I  I  V  Q  S  L  L  E  L  T  L  *  F  L  L  I   : D  F  L  *  T  E  A  D  Q  *  *  G  L  F  S  P  R  L  C  L  R  L  F  Q  Q  *  L  Q  S  Q  K  C  Y  G  E  V  I  H  L  L  Q  K  D  Q  N  Q  S  L  S  L  L  L  E </first_frame>
            <second_frame>  C  I  S  Q  P  F  A  C  S  H  S  T  L  V  R  R  I  R  P  G  R  K  P  G  E  D  C  T  *  S  L  S  D  R  G  *  V  Y  I  C  D  R  V  V  S  V  *  *  Y  Q  S  S  S  F  G  H  F  S  W  V  F  V  D  L  F  S  P  W  *  S  D  S  *  T   : D  S  K  P  W  K  D  S  *  I  E  S  P  *  Y  Q  E  R  S  N  P  R  C  I  I  R  R  G  L  C  C  Y  V  R  C  Y  C  S  V  *  W  I  R  Y  S   : E  Y  A  S  E  V  V  *  R  K  T  L  S  V  L  G  *  D  R  I  *  K  F  C  R  Y  F  W  E  A  S  I  P  A  M  E  C  *  *  I  W  F  L  C  *  C  C  Y  H  W  S  D  A  P  S  S  A  G  A  T   : V  K  S  A  L  L  L  C  N  H  C  W  S  *  R  C  D  F  C  L  S  :  T  F  C  R  P  K  Q  I  N  S  R  G  Y  S  L  Q  G  C  A  C  D  F  F  N  N  N  F  N  L  K  N  V  M  E  K  *  S  I  S  Y  K  K  T  R  T  K  A  S  A  F  C  S   </second_frame>
            <third_frame>   A  L  A  N  R  S  L  V  L  I  L  H  W  S  E  G  S  D  P  V  G  N  R  V  K  I  V  P  D  L  S  P  I  E  A  E  Y  I  S  A  I  E  W  L  V  F  D  D  I  K  V  L  A  L  G  T  S  R  G  Y  L  L  I  Y  S  L  R  G  D  L  I  H  K  Q  :  I  V  S  P  G  K  I  L  R  L  R  V  R  D  T  K  R  D  L  T  Q  D  A  S  S  E  E  V  C  V  V  M  S  G  V  I  A  R  F  D  G  S  D  I  Q  :  N  M  L  Q  R  W  F  R  E  R  H  S  Q  F  W  D  E  T  E  S  E  N  S  A  D  T  F  G  R  L  P  Y  Q  L  W  N  V  N  K  Y  G  S  C  V  D  A  A  I  T  G  L  M  P  P  P  L  L  E  L  Q  :  S  S  Q  R  Y  Y  C  A  I  T  V  G  A  D  A  V  I  S  A  Y  R :   L  S  V  D  R  S  R  S  I  V  G  A  I  L  S  K  V  V  P  A  T  F  S  T  I  T  S  I  S  K  M  L  W  R  S  D  P  S  P  T  K  R  P  E  P  K  P  Q  P  F  A  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65152" stop="65373"/>
                    <exon start="66003" stop="66137"/>
                    <exon start="66308" stop="66487"/>
                    <exon start="66728" stop="66789"/>
                    <exon start="66911" stop="67067"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALANRSLVLILHWSEGSDPVGNRVKIVPDLSPIEAEYISAIEWLVFDDIKVLALGTSRGYLLIYSLRGDLIHKQIVSPGKILRLRVRDTKRDLTQDASSEEVCVVMSGVIARFDGSDIQNMLQRWFRERHSQFWDETESENSADTFGRLPYQLWNVNKYGSCVDAAITGLMPPPLLELQSSQRYYCAITVGADAVISAYRLSVDRSRSIVGAILSKVVPATFSTITSISKMLWRSDPSPTKRPEPKPQPFAR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="69903" PGL_stop="74712"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69903" e_stop="70328"/>
            <exon e_start="71065" e_stop="71152"/>
            <exon e_start="71893" e_stop="72022"/>
            <exon e_start="73932" e_stop="74712"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.999" e_score="0.955"/>
          <exon-intron don_prob="0.939" acc_prob="0.962" e_score="0.954"/>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69903" e_stop="70328" e_length="426"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.962">
            <gDNA_intron_boundary i_start="70329" i_stop="71064" i_length="736"/>
          </intron>
          <exon e_serial="2" e_score="0.955">
            <gDNA_exon_boundary e_start="71065" e_stop="71152" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.911" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71153" i_stop="71892" i_length="740"/>
          </intron>
          <exon e_serial="3" e_score="0.954">
            <gDNA_exon_boundary e_start="71893" e_stop="72022" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.939" acc_prob="0.962">
            <gDNA_intron_boundary i_start="72023" i_stop="73931" i_length="1909"/>
          </intron>
          <exon e_serial="4" e_score="0.913">
            <gDNA_exon_boundary e_start="73932" e_stop="74712" e_length="781"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69903" stop="70328"/>
              <exon start="71065" stop="71107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69903" stop="70268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69927" stop="70328"/>
              <exon start="71065" stop="71152"/>
              <exon start="71893" stop="72022"/>
              <exon start="73932" stop="74097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70005" stop="70256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74027" stop="74623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436721" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74235" stop="74712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623498" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCCTTCACACTCTAATTTACAGTTTCAAAAAAAAAAAAAAAAAAAAAAATTCATCAAAATGTCACTTCGTCGTTCATTTCTCTCTCGAAGAATCATCAGTCGATCTTTTACATTTTCCAAATCATTCAAAGAATTCAAACTTCCAGAACCTTCTACTAGAGATGATTTCGCTGTTGGAGATGAACAAAACGGCGCCGCCGGTGAATCGGATTCCGGCGATGCAACGTCGTCGTGGTCGAATATGTTGCCGGAGCTGTTGAGAGAGATTATACAGAGAGTGGAAGCTACGGAGGACAGTTGGCCTCTACGTCAAAACGTCGTCGCTTGTGGATGTGTGTGTAAGAGATGGAGGCAAGTTACTGAGGATGTAGTTGAGTCGTCTCTTCAGGCTGGGAAAATTACTTTTCCGTCTTGCCTTAAACAG : CCAGGGCCTCGGGACCCTCCTCTTCAATGTTTCATCAAGCGTGACAAGAAGAACGCGACCTTTTACCTATATCTTGCACTTTCACCCT : CATTAATGGACCAGGGGAAGTTCCTCTTAGCAGCCCGGAGGTACAGAAATGGTGCTCACATTGAATATATAATATCTCTCGACGCAGATGATTTGTCACAGAGAAGTAAGGCATATGTTGGGAAGTTAAG : ATCGGACTTTCTTGGAACCAATTTTACCATATATGATAGTCAAGCCCCACACAATGGGGCAAGGCCATCAAGCAGCCGGTCTTGTCGACGTTTTGCAAGTAAGCAAATTAGTCCCCAATTACCAGCTGGTAATTTTGAAGTGGGAAGTGTTTCCTACAAGTTAAACCTGCTGAAGTCAAGAGGACCAAGGAGGATGATTTGTTCGCTCAATTGCCCCTGTCCTGGAGAAGCTGCCTCGGACAAATCTCAGGATGCTCTGAAGAAGAAGCTGGTTGGTTCCGCAGAAGCCAACTCTACAGTTCTGAAAAACAAAGCTCCAAGATGGCATGAGCATTTGCAATGTTGGTGTTTAAATTTCCATGGAAGGGTCACCGTTGCATCTGTGAAAAACTTTCAGCTAGTGGCAACGATGGACCAAAGCCAACCTGATGGAAAAGGTGACGAGGATACAGTTATCCTCCAGTTTGGAAAAGTAGGAGATGATGTTTTTACAATGGACTACAGGAAGCCTTTGTCTGCTTTCCAAGCGTTTGCAATTTGCCTGACCAGTTTTGGCACTAAATTGGCCTGTGAATAGATTCTTTAGAACTTGTAATATACTTCCTAGTTTGCTTTTCGTTTTTTCGTTTTCTTCGGGTGCACAGTGACACTTGTTTAATCTAGTATTCTCTACTCGTGCTATTTAGTAAATGTAGCAGATGTTGGGACCAAGTGTAATTTAACCTTTATGAGAATTTCAACATCAATGTAACAAATAGCGGAGTTTTCTGTACTACTCGGG</gDNA_template>
            <first_frame> S  P  S  H  S  N  L  Q  F  Q  K  K  K  K  K  K  K  F  I  K  M  S  L  R  R  S  F  L  S  R  R  I  I  S  R  S  F  T  F  S  K  S  F  K  E  F  K  L  P  E  P  S  T  R  D  D  F  A  V  G  D  E  Q  N  G  A  A  G  E  S  D  S  G  D  A  T  S  S  W  S  N  M  L  P  E  L  L  R  E  I  I  Q  R  V  E  A  T  E  D  S  W  P  L  R  Q  N  V  V  A  C  G  C  V  C  K  R  W  R  Q  V  T  E  D  V  V  E  S  S  L  Q  A  G  K  I  T  F  P  S  C  L  K  Q  :  P  G  P  R  D  P  P  L  Q  C  F  I  K  R  D  K  K  N  A  T  F  Y  L  Y  L  A  L  S  P   : S  L  M  D  Q  G  K  F  L  L  A  A  R  R  Y  R  N  G  A  H  I  E  Y  I  I  S  L  D  A  D  D  L  S  Q  R  S  K  A  Y  V  G  K  L  R :   S  D  F  L  G  T  N  F  T  I  Y  D  S  Q  A  P  H  N  G  A  R  P  S  S  S  R  S  C  R  R  F  A  S  K  Q  I  S  P  Q  L  P  A  G  N  F  E  V  G  S  V  S  Y  K  L  N  L  L  K  S  R  G  P  R  R  M  I  C  S  L  N  C  P  C  P  G  E  A  A  S  D  K  S  Q  D  A  L  K  K  K  L  V  G  S  A  E  A  N  S  T  V  L  K  N  K  A  P  R  W  H  E  H  L  Q  C  W  C  L  N  F  H  G  R  V  T  V  A  S  V  K  N  F  Q  L  V  A  T  M  D  Q  S  Q  P  D  G  K  G  D  E  D  T  V  I  L  Q  F  G  K  V  G  D  D  V  F  T  M  D  Y  R  K  P  L  S  A  F  Q  A  F  A  I  C  L  T  S  F  G  T  K  L  A  C  E  *  I  L  *  N  L  *  Y  T  S  *  F  A  F  R  F  F  V  F  F  G  C  T  V  T  L  V  *  S  S  I  L  Y  S  C  Y  L  V  N  V  A  D  V  G  T  K  C  N  L  T  F  M  R  I  S  T  S  M  *  Q  I  A  E  F  S  V  L  L  G </first_frame>
            <second_frame>  L  L  H  T  L  I  Y  S  F  K  K  K  K  K  K  K  N  S  S  K  C  H  F  V  V  H  F  S  L  E  E  S  S  V  D  L  L  H  F  P  N  H  S  K  N  S  N  F  Q  N  L  L  L  E  M  I  S  L  L  E  M  N  K  T  A  P  P  V  N  R  I  P  A  M  Q  R  R  R  G  R  I  C  C  R  S  C  *  E  R  L  Y  R  E  W  K  L  R  R  T  V  G  L  Y  V  K  T  S  S  L  V  D  V  C  V  R  D  G  G  K  L  L  R  M  *  L  S  R  L  F  R  L  G  K  L  L  F  R  L  A  L  N  S :   Q  G  L  G  T  L  L  F  N  V  S  S  S  V  T  R  R  T  R  P  F  T  Y  I  L  H  F  H  P  :  H  *  W  T  R  G  S  S  S  *  Q  P  G  G  T  E  M  V  L  T  L  N  I  *  Y  L  S  T  Q  M  I  C  H  R  E  V  R  H  M  L  G  S  *   : D  R  T  F  L  E  P  I  L  P  Y  M  I  V  K  P  H  T  M  G  Q  G  H  Q  A  A  G  L  V  D  V  L  Q  V  S  K  L  V  P  N  Y  Q  L  V  I  L  K  W  E  V  F  P  T  S  *  T  C  *  S  Q  E  D  Q  G  G  *  F  V  R  S  I  A  P  V  L  E  K  L  P  R  T  N  L  R  M  L  *  R  R  S  W  L  V  P  Q  K  P  T  L  Q  F  *  K  T  K  L  Q  D  G  M  S  I  C  N  V  G  V  *  I  S  M  E  G  S  P  L  H  L  *  K  T  F  S  *  W  Q  R  W  T  K  A  N  L  M  E  K  V  T  R  I  Q  L  S  S  S  L  E  K  *  E  M  M  F  L  Q  W  T  T  G  S  L  C  L  L  S  K  R  L  Q  F  A  *  P  V  L  A  L  N  W  P  V  N  R  F  F  R  T  C  N  I  L  P  S  L  L  F  V  F  S  F  S  S  G  A  Q  *  H  L  F  N  L  V  F  S  T  R  A  I  *  *  M  *  Q  M  L  G  P  S  V  I  *  P  L  *  E  F  Q  H  Q  C  N  K  *  R  S  F  L  Y  Y  S   </second_frame>
            <third_frame>   S  F  T  L  *  F  T  V  S  K  K  K  K  K  K  K  I  H  Q  N  V  T  S  S  F  I  S  L  S  K  N  H  Q  S  I  F  Y  I  F  Q  I  I  Q  R  I  Q  T  S  R  T  F  Y  *  R  *  F  R  C  W  R  *  T  K  R  R  R  R  *  I  G  F  R  R  C  N  V  V  V  V  E  Y  V  A  G  A  V  E  R  D  Y  T  E  S  G  S  Y  G  G  Q  L  A  S  T  S  K  R  R  R  L  W  M  C  V  *  E  M  E  A  S  Y  *  G  C  S  *  V  V  S  S  G  W  E  N  Y  F  S  V  L  P  *  T   : A  R  A  S  G  P  S  S  S  M  F  H  Q  A  *  Q  E  E  R  D  L  L  P  I  S  C  T  F  T  L :   I  N  G  P  G  E  V  P  L  S  S  P  E  V  Q  K  W  C  S  H  *  I  Y  N  I  S  R  R  R  *  F  V  T  E  K  *  G  I  C  W  E  V  K  :  I  G  L  S  W  N  Q  F  Y  H  I  *  *  S  S  P  T  Q  W  G  K  A  I  K  Q  P  V  L  S  T  F  C  K  *  A  N  *  S  P  I  T  S  W  *  F  *  S  G  K  C  F  L  Q  V  K  P  A  E  V  K  R  T  K  E  D  D  L  F  A  Q  L  P  L  S  W  R  S  C  L  G  Q  I  S  G  C  S  E  E  E  A  G  W  F  R  R  S  Q  L  Y  S  S  E  K  Q  S  S  K  M  A  *  A  F  A  M  L  V  F  K  F  P  W  K  G  H  R  C  I  C  E  K  L  S  A  S  G  N  D  G  P  K  P  T  *  W  K  R  *  R  G  Y  S  Y  P  P  V  W  K  S  R  R  *  C  F  Y  N  G  L  Q  E  A  F  V  C  F  P  S  V  C  N  L  P  D  Q  F  W  H  *  I  G  L  *  I  D  S  L  E  L  V  I  Y  F  L  V  C  F  S  F  F  R  F  L  R  V  H  S  D  T  C  L  I  *  Y  S  L  L  V  L  F  S  K  C  S  R  C  W  D  Q  V  *  F  N  L  Y  E  N  F  N  I  N  V  T  N  S  G  V  F  C  T  T  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69903" stop="70328"/>
                    <exon start="71065" stop="71152"/>
                    <exon start="71893" stop="72022"/>
                    <exon start="73932" stop="74508"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1218</number_coding_nucleotides>
                  <number_encoded_amino_acids>406</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPSHSNLQFQKKKKKKKFIKMSLRRSFLSRRIISRSFTFSKSFKEFKLPEPSTRDDFAVGDEQNGAAGESDSGDATSSWSNMLPELLREIIQRVEATEDSWPLRQNVVACGCVCKRWRQVTEDVVESSLQAGKITFPSCLKQPGPRDPPLQCFIKRDKKNATFYLYLALSPSLMDQGKFLLAARRYRNGAHIEYIISLDADDLSQRSKAYVGKLRSDFLGTNFTIYDSQAPHNGARPSSSRSCRRFASKQISPQLPAGNFEVGSVSYKLNLLKSRGPRRMICSLNCPCPGEAASDKSQDALKKKLVGSAEANSTVLKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATMDQSQPDGKGDEDTVILQFGKVGDDVFTMDYRKPLSAFQAFAICLTSFGTKLACE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="72856" e_stop="73308"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72856" e_stop="73308" e_length="453"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72856" stop="73308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203479" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGCTGATTATACCTTTAGATTTTTTTATTTGCATACCTTTTTGGTGTCCCTCATGCAATTTCTCTATTAATATCTTGCTAGAAAGAAGAATCCTGGCATGGTGAAATTCAACTCTTAGGGATAAAAATTCTGGCTATATTCTTAAGCTATAATCTATGTGATAGTCCACCTAATTTCACAGATCTTGTTACTTTTTTTCCCCAGCTAACTGAACTGTTTTTAGGCTGGCAACTGCTGATAATACCGTTGACAAAATTCTGTCAGTTTTCTTACTTTAAAAAGATAACTTTGGTGCTATTTCTTCCTCTCTTTCTTTCCAAATGTTACGTCAAGATATCTAAGTCTTGGAACATAAATTGTTTGGTATCTAGACGTTTACCCGTCTTTGCTGCCATGCAACACTAATCTTGATACAATGAATTAACGTGCAATTGTACGCTTCTGATCATGC</gDNA_template>
            <first_frame> L  A  D  Y  T  F  R  F  F  Y  L  H  T  F  L  V  S  L  M  Q  F  L  Y  *  Y  L  A  R  K  K  N  P  G  M  V  K  F  N  S  *  G  *  K  F  W  L  Y  S  *  A  I  I  Y  V  I  V  H  L  I  S  Q  I  L  L  L  F  F  P  S  *  L  N  C  F  *  A  G  N  C  *  *  Y  R  *  Q  N  S  V  S  F  L  T  L  K  R  *  L  W  C  Y  F  F  L  S  F  F  P  N  V  T  S  R  Y  L  S  L  G  T  *  I  V  W  Y  L  D  V  Y  P  S  L  L  P  C  N  T  N  L  D  T  M  N  *  R  A  I  V  R  F  *  S  C </first_frame>
            <second_frame>  L  L  I  I  P  L  D  F  F  I  C  I  P  F  W  C  P  S  C  N  F  S  I  N  I  L  L  E  R  R  I  L  A  W  *  N  S  T  L  R  D  K  N  S  G  Y  I  L  K  L  *  S  M  *  *  S  T  *  F  H  R  S  C  Y  F  F  S  P  A  N  *  T  V  F  R  L  A  T  A  D  N  T  V  D  K  I  L  S  V  F  L  L  *  K  D  N  F  G  A  I  S  S  S  L  S  F  Q  M  L  R  Q  D  I  *  V  L  E  H  K  L  F  G  I  *  T  F  T  R  L  C  C  H  A  T  L  I  L  I  Q  *  I  N  V  Q  L  Y  A  S  D  H   </second_frame>
            <third_frame>   C  *  L  Y  L  *  I  F  L  F  A  Y  L  F  G  V  P  H  A  I  S  L  L  I  S  C  *  K  E  E  S  W  H  G  E  I  Q  L  L  G  I  K  I  L  A  I  F  L  S  Y  N  L  C  D  S  P  P  N  F  T  D  L  V  T  F  F  P  Q  L  T  E  L  F  L  G  W  Q  L  L  I  I  P  L  T  K  F  C  Q  F  S  Y  F  K  K  I  T  L  V  L  F  L  P  L  F  L  S  K  C  Y  V  K  I  S  K  S  W  N  I  N  C  L  V  S  R  R  L  P  V  F  A  A  M  Q  H  *  S  *  Y  N  E  L  T  C  N  C  T  L  L  I  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72939" stop="73262"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEESWHGEIQLLGIKILAIFLSYNLCDSPPNFTDLVTFFPQLTELFLGWQLLIIPLTKFCQFSYFKKITLVLFLPLFLSKCYVKISKSWNINCLVSRRLPVFAAMQH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="74703" PGL_stop="73821"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74703" e_stop="73821"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="74703" e_stop="73821" e_length="883"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74703" stop="74126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74603" stop="73821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426467" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACAGAAAACTCCGCTATTTGTTACATTGATGTTGAAATTCTCATAAAGGTTAAATTACACTTGGTCCCAACATCTGCTACATTTACTAAATAGCACGAGTAGAGAATACTAGATTAAACAAGTGTCACTGTGCACCCGAAGAAAACGAAAAAACGAAAAGCAAACTAGGAAGTATATTACAAGTTCTAAAGAATCTATTCACAGGCCAATTTAGTGCCAAAACTGGTCAGGCAAATTGCAAACGCTTGGAAAGCAGACAAAGGCTTCCTGTAGTCCATTGTAAAAACATCATCTCCTACTTTTCCAAACTGGAGGATAACTGTATCCTCGTCACCTTTTCCATCAGGTTGGCTTTGGTCCATCGTTGCCACTAGCTGAAAGTTTTTCACAGATGCAACGGTGACCCTTCCATGGAAATTTAAACACCAACATTGCAAATGCTCATGCCATCTTGGAGCTTTGTTTTTCAGAACTGTAGAGTTGGCTTCTGCGGAACCAACCAGCTTCTTCTTCAGAGCATCCTGAGATTTGTCCGAGGCAGCTTCTCCAGGACAGGGGCAATTGAGCGAACAAATCATCCTCCTTGGTCCTCTTGACTTCAGCAGGTTTAACTTGTAGGAAACACTTCCCACTTCAAAATTACCAGCTGGTAATTGGGGACTAATTTGCTTACTTGCAAAACGTCGACAAGACCGGCTGCTTGATGGCCTTGCCCCATTGTGTGGGGCTTGACTATCATATATGGTAAAATTGGTTCCAAGAAAGTCCGATCTGTCAAGTTGGATTCAGTGGGAAGGTTAGAACATGAAGGAAAAAACAAAAATGAAATCAGAACACATCTTTTCTTCTCCCCTTACTCTAAGAGTTGTATCTATCATAATT</gDNA_template>
            <first_frame> Y  R  K  L  R  Y  L  L  H  *  C  *  N  S  H  K  G  *  I  T  L  G  P  N  I  C  Y  I  Y  *  I  A  R  V  E  N  T  R  L  N  K  C  H  C  A  P  E  E  N  E  K  T  K  S  K  L  G  S  I  L  Q  V  L  K  N  L  F  T  G  Q  F  S  A  K  T  G  Q  A  N  C  K  R  L  E  S  R  Q  R  L  P  V  V  H  C  K  N  I  I  S  Y  F  S  K  L  E  D  N  C  I  L  V  T  F  S  I  R  L  A  L  V  H  R  C  H  *  L  K  V  F  H  R  C  N  G  D  P  S  M  E  I  *  T  P  T  L  Q  M  L  M  P  S  W  S  F  V  F  Q  N  C  R  V  G  F  C  G  T  N  Q  L  L  L  Q  S  I  L  R  F  V  R  G  S  F  S  R  T  G  A  I  E  R  T  N  H  P  P  W  S  S  *  L  Q  Q  V  *  L  V  G  N  T  S  H  F  K  I  T  S  W  *  L  G  T  N  L  L  T  C  K  T  S  T  R  P  A  A  *  W  P  C  P  I  V  W  G  L  T  I  I  Y  G  K  I  G  S  K  K  V  R  S  V  K  L  D  S  V  G  R  L  E  H  E  G  K  N  K  N  E  I  R  T  H  L  F  F  S  P  Y  S  K  S  C  I  Y  H  N  </first_frame>
            <second_frame>  T  E  N  S  A  I  C  Y  I  D  V  E  I  L  I  K  V  K  L  H  L  V  P  T  S  A  T  F  T  K  *  H  E  *  R  I  L  D  *  T  S  V  T  V  H  P  K  K  T  K  K  R  K  A  N  *  E  V  Y  Y  K  F  *  R  I  Y  S  Q  A  N  L  V  P  K  L  V  R  Q  I  A  N  A  W  K  A  D  K  G  F  L  *  S  I  V  K  T  S  S  P  T  F  P  N  W  R  I  T  V  S  S  S  P  F  P  S  G  W  L  W  S  I  V  A  T  S  *  K  F  F  T  D  A  T  V  T  L  P  W  K  F  K  H  Q  H  C  K  C  S  C  H  L  G  A  L  F  F  R  T  V  E  L  A  S  A  E  P  T  S  F  F  F  R  A  S  *  D  L  S  E  A  A  S  P  G  Q  G  Q  L  S  E  Q  I  I  L  L  G  P  L  D  F  S  R  F  N  L  *  E  T  L  P  T  S  K  L  P  A  G  N  W  G  L  I  C  L  L  A  K  R  R  Q  D  R  L  L  D  G  L  A  P  L  C  G  A  *  L  S  Y  M  V  K  L  V  P  R  K  S  D  L  S  S  W  I  Q  W  E  G  *  N  M  K  E  K  T  K  M  K  S  E  H  I  F  S  S  P  L  T  L  R  V  V  S  I  I  I </second_frame>
            <third_frame>   Q  K  T  P  L  F  V  T  L  M  L  K  F  S  *  R  L  N  Y  T  W  S  Q  H  L  L  H  L  L  N  S  T  S  R  E  Y  *  I  K  Q  V  S  L  C  T  R  R  K  R  K  N  E  K  Q  T  R  K  Y  I  T  S  S  K  E  S  I  H  R  P  I  *  C  Q  N  W  S  G  K  L  Q  T  L  G  K  Q  T  K  A  S  C  S  P  L  *  K  H  H  L  L  L  F  Q  T  G  G  *  L  Y  P  R  H  L  F  H  Q  V  G  F  G  P  S  L  P  L  A  E  S  F  S  Q  M  Q  R  *  P  F  H  G  N  L  N  T  N  I  A  N  A  H  A  I  L  E  L  C  F  S  E  L  *  S  W  L  L  R  N  Q  P  A  S  S  S  E  H  P  E  I  C  P  R  Q  L  L  Q  D  R  G  N  *  A  N  K  S  S  S  L  V  L  L  T  S  A  G  L  T  C  R  K  H  F  P  L  Q  N  Y  Q  L  V  I  G  D  *  F  A  Y  L  Q  N  V  D  K  T  G  C  L  M  A  L  P  H  C  V  G  L  D  Y  H  I  W  *  N  W  F  Q  E  S  P  I  C  Q  V  G  F  S  G  K  V  R  T  *  R  K  K  Q  K  *  N  Q  N  T  S  F  L  L  P  L  L  *  E  L  Y  L  S  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74613" stop="74329"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IARVENTRLNKCHCAPEENEKTKSKLGSILQVLKNLFTGQFSAKTGQANCKRLESRQRLPVVHCKNIISYFSKLEDNCILVTFSIRLALVHRCH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="74842" PGL_stop="75188"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74842" e_stop="75188"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="74842" e_stop="75188" e_length="347"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74842" stop="75188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393360" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCATTCACATAGGGCAATTATTATTATTTTTATATAGAAGAGGTAACATCTCCATTAGTATAGAATTGTAGCATCAAATTATATTCCACAAAGCAAATGGATATACTTGACATATTCCCATATGCCAATTATGTCTTCCATTATATCTCAAGTGCTGATCTGAAGAATGACGGGGATGTCATGCTTCAAGAGACTGAGAACTTTTTTCTCAAGAAAACGGGAAGCACAAGATAACATCCCTTGCACAAGCATAAACGTCTTATTTTTCCACAGAAATAACACCCATGTAGCCAAGAAATCCAGAACCATCGATCCATACAAAGGCACAAGCACCCATAGTGGCTAT</gDNA_template>
            <first_frame> I  I  H  I  G  Q  L  L  L  F  L  Y  R  R  G  N  I  S  I  S  I  E  L  *  H  Q  I  I  F  H  K  A  N  G  Y  T  *  H  I  P  I  C  Q  L  C  L  P  L  Y  L  K  C  *  S  E  E  *  R  G  C  H  A  S  R  D  *  E  L  F  S  Q  E  N  G  K  H  K  I  T  S  L  A  Q  A  *  T  S  Y  F  S  T  E  I  T  P  M  *  P  R  N  P  E  P  S  I  H  T  K  A  Q  A  P  I  V  A   </first_frame>
            <second_frame>  S  F  T  *  G  N  Y  Y  Y  F  Y  I  E  E  V  T  S  P  L  V  *  N  C  S  I  K  L  Y  S  T  K  Q  M  D  I  L  D  I  F  P  Y  A  N  Y  V  F  H  Y  I  S  S  A  D  L  K  N  D  G  D  V  M  L  Q  E  T  E  N  F  F  L  K  K  T  G  S  T  R  *  H  P  L  H  K  H  K  R  L  I  F  P  Q  K  *  H  P  C  S  Q  E  I  Q  N  H  R  S  I  Q  R  H  K  H  P  *  W  L  </second_frame>
            <third_frame>   H  S  H  R  A  I  I  I  I  F  I  *  K  R  *  H  L  H  *  Y  R  I  V  A  S  N  Y  I  P  Q  S  K  W  I  Y  L  T  Y  S  H  M  P  I  M  S  S  I  I  S  Q  V  L  I  *  R  M  T  G  M  S  C  F  K  R  L  R  T  F  F  S  R  K  R  E  A  Q  D  N  I  P  C  T  S  I  N  V  L  F  F  H  R  N  N  T  H  V  A  K  K  S  R  T  I  D  P  Y  K  G  T  S  T  H  S  G  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0079F09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="77675" PGL_stop="74843"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77675" e_stop="77487"/>
            <exon e_start="76414" e_stop="76331"/>
            <exon e_start="75620" e_stop="75538"/>
            <exon e_start="75392" e_stop="74843"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77675" e_stop="77487" e_length="189"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="77486" i_stop="76415" i_length="1072"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76414" e_stop="76331" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.968" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76330" i_stop="75621" i_length="710"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75620" e_stop="75538" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="75537" i_stop="75393" i_length="145"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="75392" e_stop="74843" e_length="550"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77675" stop="77487"/>
              <exon start="76414" stop="76331"/>
              <exon start="75620" stop="75538"/>
              <exon start="75392" stop="74860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77672" stop="77487"/>
              <exon start="76414" stop="76331"/>
              <exon start="75620" stop="75538"/>
              <exon start="75392" stop="75049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77672" stop="77487"/>
              <exon start="76414" stop="76331"/>
              <exon start="75620" stop="75558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77669" stop="77487"/>
              <exon start="76414" stop="76331"/>
              <exon start="75620" stop="75538"/>
              <exon start="75392" stop="74844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77669" stop="77487"/>
              <exon start="76414" stop="76331"/>
              <exon start="75620" stop="75538"/>
              <exon start="75392" stop="75237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77659" stop="77487"/>
              <exon start="76414" stop="76331"/>
              <exon start="75620" stop="75538"/>
              <exon start="75392" stop="75015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77659" stop="77487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77628" stop="77487"/>
              <exon start="76414" stop="76331"/>
              <exon start="75620" stop="75538"/>
              <exon start="75392" stop="75075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77627" stop="77487"/>
              <exon start="76414" stop="76331"/>
              <exon start="75620" stop="75538"/>
              <exon start="75392" stop="75075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77577" stop="77487"/>
              <exon start="76414" stop="76331"/>
              <exon start="75620" stop="75538"/>
              <exon start="75392" stop="74865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379788" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76376" stop="76331"/>
              <exon start="75620" stop="75538"/>
              <exon start="75392" stop="74843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373474" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76370" stop="76331"/>
              <exon start="75620" stop="75538"/>
              <exon start="75392" stop="75075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76370" stop="76331"/>
              <exon start="75620" stop="75538"/>
              <exon start="75392" stop="75075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75620" stop="75538"/>
              <exon start="75392" stop="75083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223592" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75593" stop="75538"/>
              <exon start="75392" stop="74843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373388" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75565" stop="75538"/>
              <exon start="75392" stop="75106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216396" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75339" stop="74853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292122" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75269" stop="75083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223209" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75151" stop="74853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233934" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACAAAGCGAAGAGAAGCAAGAGAGAGATTTTTCGAGCAAAGAAAAAAAAAATATGAGTGGAGGATTATCACAAGACTGGGAGCCGGTGGTGATCCGGAAGAAGGCACCGACCGCCGCCGCACGCAAGGATGAGAAAGCTGTCAACGCTGCCCGTCGCTCCGGTGCTGAGATCGAAACTATCAGAAAAT : CAACTGCTGGCTCAAACAGGGCTGCCTCTAGTAGTACGACCTTGAACACCAGGAAACTTGATGAAGATACTGAGAATCTGGCTC : ATCAAAAAGTACCGACTGAGCTGAAGAAAGCCATCATGCAAGCTCGACAAGATAAGAAGCTGACTCAGTCTCAACTTGCTCAG : CTGATAAATGAGAAGCCTCAAATCATCCAGGAGTACGAGTCAGGAAAGGCAATTCCAAATCAACAAATCATCTCTAAACTGGAGAGAGCTCTTGGTGCCAAACTTAGAGGAAAGAAATGAAGAGCCTCTTGGCTTCTCAAATCTCTATTCCAGTTCTAACTGTAGTTATGTACATGGACAACTTTTTCTGTTAGCCCTCTTTCTATAGCCACTATGGGTGCTTGTGCCTTTGTATGGATCGATGGTTCTGGATTTCTTGGCTACATGGGTGTTATTTCTGTGGAAAAATAAGACGTTTATGCTTGTGCAAGGGATGTTATCTTGTGCTTCCCGTTTTCTTGAGAAAAAAGTTCTCAGTCTCTTGAAGCATGACATCCCCGTCATTCTTCAGATCAGCACTTGAGATATAATGGAAGACATAATTGGCATATGGGAATATGTCAAGTATATCCATTTGCTTTGTGGAATATAATTTGATGCTACAATTCTATACTAATGGAGATGTTACCTCTTCTATATAAAAATAATAATAATTGCCCTATGTGAATGA</gDNA_template>
            <first_frame> N  K  A  K  R  S  K  R  E  I  F  R  A  K  K  K  K  I  *  V  E  D  Y  H  K  T  G  S  R  W  *  S  G  R  R  H  R  P  P  P  H  A  R  M  R  K  L  S  T  L  P  V  A  P  V  L  R  S  K  L  S  E  N  :  Q  L  L  A  Q  T  G  L  P  L  V  V  R  P  *  T  P  G  N  L  M  K  I  L  R  I  W  L  :  I  K  K  Y  R  L  S  *  R  K  P  S  C  K  L  D  K  I  R  S  *  L  S  L  N  L  L  S :   *  *  M  R  S  L  K  S  S  R  S  T  S  Q  E  R  Q  F  Q  I  N  K  S  S  L  N  W  R  E  L  L  V  P  N  L  E  E  R  N  E  E  P  L  G  F  S  N  L  Y  S  S  S  N  C  S  Y  V  H  G  Q  L  F  L  L  A  L  F  L  *  P  L  W  V  L  V  P  L  Y  G  S  M  V  L  D  F  L  A  T  W  V  L  F  L  W  K  N  K  T  F  M  L  V  Q  G  M  L  S  C  A  S  R  F  L  E  K  K  V  L  S  L  L  K  H  D  I  P  V  I  L  Q  I  S  T  *  D  I  M  E  D  I  I  G  I  W  E  Y  V  K  Y  I  H  L  L  C  G  I  *  F  D  A  T  I  L  Y  *  W  R  C  Y  L  F  Y  I  K  I  I  I  I  A  L  C  E  * </first_frame>
            <second_frame>  T  K  R  R  E  A  R  E  R  F  F  E  Q  R  K  K  K  Y  E  W  R  I  I  T  R  L  G  A  G  G  D  P  E  E  G  T  D  R  R  R  T  Q  G  *  E  S  C  Q  R  C  P  S  L  R  C  *  D  R  N  Y  Q  K  I :   N  C  W  L  K  Q  G  C  L  *  *  Y  D  L  E  H  Q  E  T  *  *  R  Y  *  E  S  G  S :   S  K  S  T  D  *  A  E  E  S  H  H  A  S  S  T  R  *  E  A  D  S  V  S  T  C  S   : A  D  K  *  E  A  S  N  H  P  G  V  R  V  R  K  G  N  S  K  S  T  N  H  L  *  T  G  E  S  S  W  C  Q  T  *  R  K  E  M  K  S  L  L  A  S  Q  I  S  I  P  V  L  T  V  V  M  Y  M  D  N  F  F  C  *  P  S  F  Y  S  H  Y  G  C  L  C  L  C  M  D  R  W  F  W  I  S  W  L  H  G  C  Y  F  C  G  K  I  R  R  L  C  L  C  K  G  C  Y  L  V  L  P  V  F  L  R  K  K  F  S  V  S  *  S  M  T  S  P  S  F  F  R  S  A  L  E  I  *  W  K  T  *  L  A  Y  G  N  M  S  S  I  S  I  C  F  V  E  Y  N  L  M  L  Q  F  Y  T  N  G  D  V  T  S  S  I  *  K  *  *  *  L  P  Y  V  N   </second_frame>
            <third_frame>   Q  S  E  E  K  Q  E  R  D  F  S  S  K  E  K  K  N  M  S  G  G  L  S  Q  D  W  E  P  V  V  I  R  K  K  A  P  T  A  A  A  R  K  D  E  K  A  V  N  A  A  R  R  S  G  A  E  I  E  T  I  R  K   : S  T  A  G  S  N  R  A  A  S  S  S  T  T  L  N  T  R  K  L  D  E  D  T  E  N  L  A   : H  Q  K  V  P  T  E  L  K  K  A  I  M  Q  A  R  Q  D  K  K  L  T  Q  S  Q  L  A  Q  :  L  I  N  E  K  P  Q  I  I  Q  E  Y  E  S  G  K  A  I  P  N  Q  Q  I  I  S  K  L  E  R  A  L  G  A  K  L  R  G  K  K  *  R  A  S  W  L  L  K  S  L  F  Q  F  *  L  *  L  C  T  W  T  T  F  S  V  S  P  L  S  I  A  T  M  G  A  C  A  F  V  W  I  D  G  S  G  F  L  G  Y  M  G  V  I  S  V  E  K  *  D  V  Y  A  C  A  R  D  V  I  L  C  F  P  F  S  *  E  K  S  S  Q  S  L  E  A  *  H  P  R  H  S  S  D  Q  H  L  R  Y  N  G  R  H  N  W  H  M  G  I  C  Q  V  Y  P  F  A  L  W  N  I  I  *  C  Y  N  S  I  L  M  E  M  L  P  L  L  Y  K  N  N  N  N  C  P  M  *  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77673" stop="77487"/>
                    <exon start="76414" stop="76331"/>
                    <exon start="75620" stop="75538"/>
                    <exon start="75392" stop="75273"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSEEKQERDFSSKEKKNMSGGLSQDWEPVVIRKKAPTAAARKDEKAVNAARRSGAEIETIRKSTAGSNRAASSSTTLNTRKLDEDTENLAHQKVPTELKKAIMQARQDKKLTQSQLAQLINEKPQIIQEYESGKAIPNQQIISKLERALGAKLRGKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75184" stop="74990"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLWVLVPLYGSMVLDFLATWVLFLWKNKTFMLVQGMLSCASRFLEKKVLSLLKHDIPVILQIST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="79310" PGL_stop="78993"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79310" e_stop="78993"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="79310" e_stop="78993" e_length="318"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79310" stop="78993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216482" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAAATCAAGTCTCTTGGTTTGTAATAGTCTAGCAAAACTTGGAAACTAAGTATCTCATGAACTCAAATGTAATAGTTAGTAGTACTGCCAACTATGGTGTAACCGCTCGGAACATAAGCACTTGAGATCTCATGTTCTAGGTTATGCCATAATTTCTAATTTTTGCTTGTTTATAGTTGCATGTTGTTGAGATTTCGAAGAATATGTTTTTGTATTTAGATGGAAAAACTCTGTTGGATGAACGAGGAAAACACTCTGTTTAAAAAGACTTAATAGTAGTTGATTTGGCATTGACAACATATGGTTGAAATGTTT</gDNA_template>
            <first_frame> K  K  I  K  S  L  G  L  *  *  S  S  K  T  W  K  L  S  I  S  *  T  Q  M  *  *  L  V  V  L  P  T  M  V  *  P  L  G  T  *  A  L  E  I  S  C  S  R  L  C  H  N  F  *  F  L  L  V  Y  S  C  M  L  L  R  F  R  R  I  C  F  C  I  *  M  E  K  L  C  W  M  N  E  E  N  T  L  F  K  K  T  *  *  *  L  I  W  H  *  Q  H  M  V  E  M  F </first_frame>
            <second_frame>  K  K  S  S  L  L  V  C  N  S  L  A  K  L  G  N  *  V  S  H  E  L  K  C  N  S  *  *  Y  C  Q  L  W  C  N  R  S  E  H  K  H  L  R  S  H  V  L  G  Y  A  I  I  S  N  F  C  L  F  I  V  A  C  C  *  D  F  E  E  Y  V  F  V  F  R  W  K  N  S  V  G  *  T  R  K  T  L  C  L  K  R  L  N  S  S  *  F  G  I  D  N  I  W  L  K  C   </second_frame>
            <third_frame>   K  N  Q  V  S  W  F  V  I  V  *  Q  N  L  E  T  K  Y  L  M  N  S  N  V  I  V  S  S  T  A  N  Y  G  V  T  A  R  N  I  S  T  *  D  L  M  F  *  V  M  P  *  F  L  I  F  A  C  L  *  L  H  V  V  E  I  S  K  N  M  F  L  Y  L  D  G  K  T  L  L  D  E  R  G  K  H  S  V  *  K  D  L  I  V  V  D  L  A  L  T  T  Y  G  *  N  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0079F09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="78999" PGL_stop="79447"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78999" e_stop="79447"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="78999" e_stop="79447" e_length="449"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78999" stop="79447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216041" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAACCATATGTTGTCAATGCCAAATCAACTACTATTAAGTCTTTTTAAACAGAGTGTTTTCCTCGTTCATCCAACAGAGTTTTTCCATCTAAATACAAAAACATATTCTTCGAAATCTCAACAACATGCAACTATAAACAAGCAAAAATTAGAAATTATGGCATAACCTAGAACATGAGATCTCAAGTGCTTATGTTCCGAGCGGTTACACCATAGTTGGCAGTACTACTAACTATTACATTTGAGTTCATGAGATACTTAGTTTCCAAGTTTTGCTAGACTATTACAAACCAAGAGACTTGATTTTTTTCGGAATATAGTAGTAGCCTTTGTTATCTTGTTGTAGGTTGGTACTAAACCATGGCTGTGCATTCAACAAAAACATTAAGCTGATGTAGAGGAGATCTCTTGGAATCTTCAGTTGCCAAAATTTGTGCCACCTTGTTT</gDNA_template>
            <first_frame> F  N  H  M  L  S  M  P  N  Q  L  L  L  S  L  F  K  Q  S  V  F  L  V  H  P  T  E  F  F  H  L  N  T  K  T  Y  S  S  K  S  Q  Q  H  A  T  I  N  K  Q  K  L  E  I  M  A  *  P  R  T  *  D  L  K  C  L  C  S  E  R  L  H  H  S  W  Q  Y  Y  *  L  L  H  L  S  S  *  D  T  *  F  P  S  F  A  R  L  L  Q  T  K  R  L  D  F  F  R  N  I  V  V  A  F  V  I  L  L  *  V  G  T  K  P  W  L  C  I  Q  Q  K  H  *  A  D  V  E  E  I  S  W  N  L  Q  L  P  K  F  V  P  P  C   </first_frame>
            <second_frame>  S  T  I  C  C  Q  C  Q  I  N  Y  Y  *  V  F  L  N  R  V  F  S  S  F  I  Q  Q  S  F  S  I  *  I  Q  K  H  I  L  R  N  L  N  N  M  Q  L  *  T  S  K  N  *  K  L  W  H  N  L  E  H  E  I  S  S  A  Y  V  P  S  G  Y  T  I  V  G  S  T  T  N  Y  Y  I  *  V  H  E  I  L  S  F  Q  V  L  L  D  Y  Y  K  P  R  D  L  I  F  F  G  I  *  *  *  P  L  L  S  C  C  R  L  V  L  N  H  G  C  A  F  N  K  N  I  K  L  M  *  R  R  S  L  G  I  F  S  C  Q  N  L  C  H  L  V  </second_frame>
            <third_frame>   Q  P  Y  V  V  N  A  K  S  T  T  I  K  S  F  *  T  E  C  F  P  R  S  S  N  R  V  F  P  S  K  Y  K  N  I  F  F  E  I  S  T  T  C  N  Y  K  Q  A  K  I  R  N  Y  G  I  T  *  N  M  R  S  Q  V  L  M  F  R  A  V  T  P  *  L  A  V  L  L  T  I  T  F  E  F  M  R  Y  L  V  S  K  F  C  *  T  I  T  N  Q  E  T  *  F  F  S  E  Y  S  S  S  L  C  Y  L  V  V  G  W  Y  *  T  M  A  V  H  S  T  K  T  L  S  *  C  R  G  D  L  L  E  S  S  V  A  K  I  C  A  T  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0079F09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="80095" PGL_stop="101844"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80095" e_stop="80172"/>
            <exon e_start="85018" e_stop="85029"/>
            <exon e_start="87105" e_stop="87120"/>
            <exon e_start="89629" e_stop="89640"/>
            <exon e_start="92408" e_stop="92448"/>
            <exon e_start="94378" e_stop="94403"/>
            <exon e_start="95353" e_stop="95400"/>
            <exon e_start="96999" e_stop="97341"/>
            <exon e_start="97488" e_stop="97572"/>
            <exon e_start="98191" e_stop="98413"/>
            <exon e_start="98637" e_stop="98740"/>
            <exon e_start="98842" e_stop="98929"/>
            <exon e_start="99199" e_stop="99353"/>
            <exon e_start="99749" e_stop="100747"/>
            <exon e_start="100864" e_stop="101250"/>
            <exon e_start="101349" e_stop="101844"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.576" e_score="0.000"/>
          <exon-intron don_prob="0.638" acc_prob="0.399" e_score="0.750"/>
          <exon-intron don_prob="0.557" acc_prob="0.000" e_score="0.562"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.833"/>
          <exon-intron don_prob="0.267" acc_prob="0.958" e_score="0.659"/>
          <exon-intron don_prob="0.000" acc_prob="0.954" e_score="0.615"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.542"/>
          <exon-intron don_prob="0.998" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.940" e_score="0.988"/>
          <exon-intron don_prob="0.993" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.684" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.461" e_score="1.000"/>
          <exon-intron don_prob="0.713" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.000">
            <gDNA_exon_boundary e_start="80095" e_stop="80172" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.576">
            <gDNA_intron_boundary i_start="80173" i_stop="85017" i_length="4845"/>
          </intron>
          <exon e_serial="2" e_score="0.750">
            <gDNA_exon_boundary e_start="85018" e_stop="85029" e_length="12"/>
          </exon>
          <intron i_serial="2" don_prob="0.638" acc_prob="0.399">
            <gDNA_intron_boundary i_start="85030" i_stop="87104" i_length="2075"/>
          </intron>
          <exon e_serial="3" e_score="0.562">
            <gDNA_exon_boundary e_start="87105" e_stop="87120" e_length="16"/>
          </exon>
          <intron i_serial="3" don_prob="0.557" acc_prob="0.000">
            <gDNA_intron_boundary i_start="87121" i_stop="89628" i_length="2508"/>
          </intron>
          <exon e_serial="4" e_score="0.833">
            <gDNA_exon_boundary e_start="89629" e_stop="89640" e_length="12"/>
          </exon>
          <intron i_serial="4" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="89641" i_stop="92407" i_length="2767"/>
          </intron>
          <exon e_serial="5" e_score="0.659">
            <gDNA_exon_boundary e_start="92408" e_stop="92448" e_length="41"/>
          </exon>
          <intron i_serial="5" don_prob="0.267" acc_prob="0.958">
            <gDNA_intron_boundary i_start="92449" i_stop="94377" i_length="1929"/>
          </intron>
          <exon e_serial="6" e_score="0.615">
            <gDNA_exon_boundary e_start="94378" e_stop="94403" e_length="26"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.954">
            <gDNA_intron_boundary i_start="94404" i_stop="95352" i_length="949"/>
          </intron>
          <exon e_serial="7" e_score="0.542">
            <gDNA_exon_boundary e_start="95353" e_stop="95400" e_length="48"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="95401" i_stop="96998" i_length="1598"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="96999" e_stop="97341" e_length="343"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.968">
            <gDNA_intron_boundary i_start="97342" i_stop="97487" i_length="146"/>
          </intron>
          <exon e_serial="9" e_score="0.988">
            <gDNA_exon_boundary e_start="97488" e_stop="97572" e_length="85"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.940">
            <gDNA_intron_boundary i_start="97573" i_stop="98190" i_length="618"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="98191" e_stop="98413" e_length="223"/>
          </exon>
          <intron i_serial="10" don_prob="0.993" acc_prob="0.928">
            <gDNA_intron_boundary i_start="98414" i_stop="98636" i_length="223"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="98637" e_stop="98740" e_length="104"/>
          </exon>
          <intron i_serial="11" don_prob="0.987" acc_prob="0.980">
            <gDNA_intron_boundary i_start="98741" i_stop="98841" i_length="101"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="98842" e_stop="98929" e_length="88"/>
          </exon>
          <intron i_serial="12" don_prob="0.952" acc_prob="0.684">
            <gDNA_intron_boundary i_start="98930" i_stop="99198" i_length="269"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="99199" e_stop="99353" e_length="155"/>
          </exon>
          <intron i_serial="13" don_prob="0.999" acc_prob="0.461">
            <gDNA_intron_boundary i_start="99354" i_stop="99748" i_length="395"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="99749" e_stop="100747" e_length="999"/>
          </exon>
          <intron i_serial="14" don_prob="0.713" acc_prob="1.000">
            <gDNA_intron_boundary i_start="100748" i_stop="100863" i_length="116"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="100864" e_stop="101250" e_length="387"/>
          </exon>
          <intron i_serial="15" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="101251" i_stop="101348" i_length="98"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="101349" e_stop="101844" e_length="496"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80095" stop="80172"/>
              <exon start="85018" stop="85029"/>
              <exon start="87105" stop="87120"/>
              <exon start="89629" stop="89640"/>
              <exon start="92408" stop="92448"/>
              <exon start="94378" stop="94403"/>
              <exon start="95353" stop="95400"/>
              <exon start="96999" stop="97341"/>
              <exon start="97488" stop="97572"/>
              <exon start="98191" stop="98413"/>
              <exon start="98637" stop="98740"/>
              <exon start="98842" stop="98929"/>
              <exon start="99199" stop="99353"/>
              <exon start="99749" stop="100747"/>
              <exon start="100864" stop="101250"/>
              <exon start="101349" stop="101828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98215" stop="98413"/>
              <exon start="98637" stop="98740"/>
              <exon start="98842" stop="98929"/>
              <exon start="99199" stop="99353"/>
              <exon start="99749" stop="100062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98263" stop="98413"/>
              <exon start="98637" stop="98740"/>
              <exon start="98842" stop="98929"/>
              <exon start="99199" stop="99353"/>
              <exon start="99749" stop="99872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98350" stop="98413"/>
              <exon start="98637" stop="98740"/>
              <exon start="98842" stop="98929"/>
              <exon start="99199" stop="99353"/>
              <exon start="99749" stop="100262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98410" stop="98413"/>
              <exon start="98637" stop="98740"/>
              <exon start="98842" stop="98929"/>
              <exon start="99199" stop="99353"/>
              <exon start="99749" stop="100166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98663" stop="98740"/>
              <exon start="98842" stop="98929"/>
              <exon start="99199" stop="99308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98865" stop="98929"/>
              <exon start="99199" stop="99353"/>
              <exon start="99749" stop="100427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99248" stop="99353"/>
              <exon start="99749" stop="100274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99265" stop="99353"/>
              <exon start="99749" stop="100312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99292" stop="99353"/>
              <exon start="99749" stop="100309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99298" stop="99353"/>
              <exon start="99749" stop="100233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99332" stop="99353"/>
              <exon start="99749" stop="100234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99814" stop="100086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99821" stop="100359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99821" stop="100357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99896" stop="100366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99932" stop="100364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99960" stop="100429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100105" stop="100747"/>
              <exon start="100864" stop="101132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100116" stop="100715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100325" stop="100678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100363" stop="100747"/>
              <exon start="100864" stop="101132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100386" stop="100747"/>
              <exon start="100864" stop="101086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100399" stop="100747"/>
              <exon start="100864" stop="101250"/>
              <exon start="101349" stop="101425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100462" stop="100747"/>
              <exon start="100864" stop="101006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100526" stop="100747"/>
              <exon start="100864" stop="101119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100563" stop="100747"/>
              <exon start="100864" stop="101123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100660" stop="100747"/>
              <exon start="100864" stop="101209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100660" stop="100747"/>
              <exon start="100864" stop="101119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101012" stop="101250"/>
              <exon start="101349" stop="101828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370226" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101031" stop="101250"/>
              <exon start="101349" stop="101844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101041" stop="101250"/>
              <exon start="101349" stop="101750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101119" stop="101250"/>
              <exon start="101349" stop="101482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744435" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101134" stop="101250"/>
              <exon start="101349" stop="101828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101232" stop="101250"/>
              <exon start="101349" stop="101807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101491" stop="101828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101589" stop="101828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397834" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN : GTTGCTGAAGAG : TAAGGTTTTTAATGAG : TATGATCCTTTA : TTCTTGAAGTAGAATTATTGAATTCTTGAGAAGTTCATGAG : ATGGTGCAACACAAACTAACATAACA : AGATAAACGAGGAGGCTGGGTCCAAGAAAATGCACAACATTCATAAAG : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTGTTGTTGCTAAGTCGATATCCCATATGCTTAACATGGCCAACTTGGCTGAGGAGGTTCAGATTGCCAACAGTGGGAGGGCAAAGTCGAAAAAGGGCGAACTTTCAGATGAGAGCAACTTGATGACTGAATCCGACATTGAAGAAACACTCAAGAGACTTGTAGTGAACTTGAACAAGTCTCCTCGAGAAGTTTTTAATGCTCTGAAGAATCAGACTGTGGATTTGGTCTTTACTGCTCATCCGACTCAAGCTATCCGAAGATCTTTGCTTCAGAAGCATGCAAG : GATCCGCAATTGTTTGTCTCAGTTGTATGCTAAAGACATTACACCCGACGATAAAGAGGAGCTGGATGAAGCTTTAGAGAGGGAG : ATTCAAGCTGCTTTCCGCACTGATGAAATCAGAAGGACTCCTCCAACACCACAAGATGAAATGAGAGCTGGAATGAGTTACTTCCATGAAACAATTTGGAACGGTGTTCCGAAGTTTCTACGACGTGTAGACACAGCTCTTAAAAACATAGGGATTGATGAACGAGTTCCTTATAATGCTCCTCTCATTCAGTTCTCGTCTTGGATGGGTGGCGACCGTGATG : GTAATCCAAGAGTAACTCCTGAGGTCACTAGAGATGTTTGCTTATTGGCCCGAATGATGGCAGCGAATTTGTACTACTCTCAGATAGATGATCTAATGTTTGAG : TTATCTATGTGGCGTTGCAATGACGAGCTTCGTGATCGGGCAGATGAACTACACCGTTCATTAAAGAGAGACGAAAAACACTATATAG : AATTCTGGAAACAAGTTCCTCCAAGTGAACCATATCGTGTAATTATTGGTGATGTGAGAGATAAGCTATATCATACACGTGAGCGTACTCGCCAACTGTTATCCAATGGGTTCTCTGAAATTCCTGAGGAAGCAACATATACTAACATCAAGCAG : TTCTTGGAACCTCTTGAGCTCTGCTACAGATCTCTTTGTGCTTGTGGGGATCGACCAATTGCTGACGGAAGCCTTCTGGATTTTCTACGACAAGTTTCTACCTTTGGACTCTCACTTGTGAGACTTGACATAAGACAAGAGTCGGATCGGCACACTGATGTCCTTGATGCCATTACCCAGCACTTGGAAATTGGTTCATATCGAGAGTGGTCTGAGGAACGTAAACAAGAGTGGCTTCTCTCTGAACTCAGCGGCAAGCGACCTCTATTTGGACCCGACCTACCAAAAACTGAAGAAATTGATGATGTTTTGAATACATTCCATGTCATATCAGAACTTCCATCAGACTGCTTTGGGGCATACATCATCTCAATGGCCACTGCACCATCTGATGTGCTTGCTGTTGAGCTTCTACAGCGTGAATGCCACGTGAAGCAACCTTTACGGGTAGTTCCACTTTTTGAGAAATTGGATGATCTGGATGCTGCTCCTGCTGCTATTGCACGTCTTTTTTCAATTGAGTGGTACAAAAACCGCATTAATGGGAAGCAAGAAGTCATGATTGGCTACTCAGACTCTGGAAAGGATGCTGGTCGGCTGTCGGCAGCATGGCAGCTATATAAGGCTCAAGAGGAGCTTATAAAAGTTGCCAAACAATATGACGTGAAGCTAATTATGTTCCATGGCAGAGGTGGTACAGTTGGAAGAGGAGGTGGTCCTAGCCATCTTGCTATATTATCTCAGCCACCTGATACGATTCAGGGATCTCTTCGCGTAACAGTTCAAGGTGAGGTTATTGAGCAATCATTTGGGGAGGAACACTTGTGTTTTAGGACACTCCAACGTTTCACTTCTGCCACCCTAGAACATGGAATGTATCCACCTTTCCCCCCAAAGCCAGAATGGCGTGCACTTCTGGATGAAATTTCTGTTGTTGCTACAGAGAAGTATAGGTCAATAGTATTCAAGGAACCCCGATTTGTCGAGTACTTCCGCCTG : GCAACACCCGAGCTGGAGTATGGTCGAATGAACATTGGTAGCCGTCCATCAAAGCGTAAACGAAATGGAGGCATAGAAACACTTAGAGCCATTCCATGGATATTTGCATGGACCCAGACTAGGTTTCATCTGCCGGTCTGGCTTGGCTTTGGGGCAGCATTTAAGTATGCACTTAACAAGGATAAAAAAAACCTCAATATGCTGCGGGACATGCACAAAAAATGGCCATTTTTTAGAGTTACTGCTGATTTGATTGAGATGGTGTTTGCTAAGGGAGACCCCGGCATTGCTGCTTTATACGACAAGCTTCTGGTTTCTGAAGATTTGTGGTCCTTCGGTGAGCTTTTGAGGTCTGACTATGAGGAGACAAAGAGCCTCCTGCTTAAG : GTTGCTGGACACAAGGAACTTCTGGAGAACGATCCCTCCTTAAAACAACGACTCAGGCTGCGTGATTCCTATATCACTACTTTAAATGTCTGCCAAGCTTACACACTAAAGAGGATTCGTGATCCAACCTACAAAGTCACTCCAAGGCCTCACATTACCAAGGAATACATAGAATCGAAACCTGCTGCTGAACTCGTGAGCCTGAACCCACAAAGCGAATATGCTCCCGGCTTGGAAGACACACTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAATACTGGTTAAATCTATTACTATGTTTTTATGTTTTAATGGTTGATAAAGTGAACATTAAGAATCATGTATCCTTGAGTTCATCTTTTTTTTTTTTTTGCAACTTCCATAAAATGGATGAATAATTATTCCCCTCTTTGTTTAGTAGCTTCTTGAATAAAATTATGATGTAAAAGAGTACTTCTCTTCATTTACCAAATGCTTTTTGCAATTA</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  :  V  A  E  E  :  *  G  F  *  *   : V  *  S  F   : I  L  E  V  E  L  L  N  S  *  E  V  H  E  :  M  V  Q  H  K  L  T  *  Q :   D  K  R  G  G  W  V  Q  E  N  A  Q  H  S  *  S :   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  N  C  C  C  *  V  D  I  P  Y  A  *  H  G  Q  L  G  *  G  G  S  D  C  Q  Q  W  E  G  K  V  E  K  G  R  T  F  R  *  E  Q  L  D  D  *  I  R  H  *  R  N  T  Q  E  T  C  S  E  L  E  Q  V  S  S  R  S  F  *  C  S  E  E  S  D  C  G  F  G  L  Y  C  S  S  D  S  S  Y  P  K  I  F  A  S  E  A  C  K  :  D  P  Q  L  F  V  S  V  V  C  *  R  H  Y  T  R  R  *  R  G  A  G  *  S  F  R  E  G   : D  S  S  C  F  P  H  *  *  N  Q  K  D  S  S  N  T  T  R  *  N  E  S  W  N  E  L  L  P  *  N  N  L  E  R  C  S  E  V  S  T  T  C  R  H  S  S  *  K  H  R  D  *  *  T  S  S  L  *  C  S  S  H  S  V  L  V  L  D  G  W  R  P  *  W :   *  S  K  S  N  S  *  G  H  *  R  C  L  L  I  G  P  N  D  G  S  E  F  V  L  L  S  D  R  *  S  N  V  *   : V  I  Y  V  A  L  Q  *  R  A  S  *  S  G  R  *  T  T  P  F  I  K  E  R  R  K  T  L  Y  R :   I  L  E  T  S  S  S  K  *  T  I  S  C  N  Y  W  *  C  E  R  *  A  I  S  Y  T  *  A  Y  S  P  T  V  I  Q  W  V  L  *  N  S  *  G  S  N  I  Y  *  H  Q  A   : V  L  G  T  S  *  A  L  L  Q  I  S  L  C  L  W  G  S  T  N  C  *  R  K  P  S  G  F  S  T  T  S  F  Y  L  W  T  L  T  C  E  T  *  H  K  T  R  V  G  S  A  H  *  C  P  *  C  H  Y  P  A  L  G  N  W  F  I  S  R  V  V  *  G  T  *  T  R  V  A  S  L  *  T  Q  R  Q  A  T  S  I  W  T  R  P  T  K  N  *  R  N  *  *  C  F  E  Y  I  P  C  H  I  R  T  S  I  R  L  L  W  G  I  H  H  L  N  G  H  C  T  I  *  C  A  C  C  *  A  S  T  A  *  M  P  R  E  A  T  F  T  G  S  S  T  F  *  E  I  G  *  S  G  C  C  S  C  C  Y  C  T  S  F  F  N  *  V  V  Q  K  P  H  *  W  E  A  R  S  H  D  W  L  L  R  L  W  K  G  C  W  S  A  V  G  S  M  A  A  I  *  G  S  R  G  A  Y  K  S  C  Q  T  I  *  R  E  A  N  Y  V  P  W  Q  R  W  Y  S  W  K  R  R  W  S  *  P  S  C  Y  I  I  S  A  T  *  Y  D  S  G  I  S  S  R  N  S  S  R  *  G  Y  *  A  I  I  W  G  G  T  L  V  F  *  D  T  P  T  F  H  F  C  H  P  R  T  W  N  V  S  T  F  P  P  K  A  R  M  A  C  T  S  G  *  N  F  C  C  C  Y  R  E  V  *  V  N  S  I  Q  G  T  P  I  C  R  V  L  P  P   : G  N  T  R  A  G  V  W  S  N  E  H  W  *  P  S  I  K  A  *  T  K  W  R  H  R  N  T  *  S  H  S  M  D  I  C  M  D  P  D  *  V  S  S  A  G  L  A  W  L  W  G  S  I  *  V  C  T  *  Q  G  *  K  K  P  Q  Y  A  A  G  H  A  Q  K  M  A  I  F  *  S  Y  C  *  F  D  *  D  G  V  C  *  G  R  P  R  H  C  C  F  I  R  Q  A  S  G  F  *  R  F  V  V  L  R  *  A  F  E  V  *  L  *  G  D  K  E  P  P  A  *   : G  C  W  T  Q  G  T  S  G  E  R  S  L  L  K  T  T  T  Q  A  A  *  F  L  Y  H  Y  F  K  C  L  P  S  L  H  T  K  E  D  S  *  S  N  L  Q  S  H  S  K  A  S  H  Y  Q  G  I  H  R  I  E  T  C  C  *  T  R  E  P  E  P  T  K  R  I  C  S  R  L  G  R  H  T  H  L  D  H  E  R  Y  C  C  W  N  A  E  Y  W  L  N  L  L  L  C  F  Y  V  L  M  V  D  K  V  N  I  K  N  H  V  S  L  S  S  S  F  F  F  F  C  N  F  H  K  M  D  E  *  L  F  P  S  L  F  S  S  F  L  N  K  I  M  M  *  K  S  T  S  L  H  L  P  N  A  F  C  N   </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L :   L  L  K  S :   K  V  F  N  E  :  Y  D  P  L  :  F  L  K  *  N  Y  *  I  L  E  K  F  M  R :   W  C  N  T  N  *  H  N   : K  I  N  E  E  A  G  S  K  K  M  H  N  I  H  K   : V  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  I  V  V  A  K  S  I  S  H  M  L  N  M  A  N  L  A  E  E  V  Q  I  A  N  S  G  R  A  K  S  K  K  G  E  L  S  D  E  S  N  L  M  T  E  S  D  I  E  E  T  L  K  R  L  V  V  N  L  N  K  S  P  R  E  V  F  N  A  L  K  N  Q  T  V  D  L  V  F  T  A  H  P  T  Q  A  I  R  R  S  L  L  Q  K  H  A  R :   I  R  N  C  L  S  Q  L  Y  A  K  D  I  T  P  D  D  K  E  E  L  D  E  A  L  E  R  E  :  I  Q  A  A  F  R  T  D  E  I  R  R  T  P  P  T  P  Q  D  E  M  R  A  G  M  S  Y  F  H  E  T  I  W  N  G  V  P  K  F  L  R  R  V  D  T  A  L  K  N  I  G  I  D  E  R  V  P  Y  N  A  P  L  I  Q  F  S  S  W  M  G  G  D  R  D   : G  N  P  R  V  T  P  E  V  T  R  D  V  C  L  L  A  R  M  M  A  A  N  L  Y  Y  S  Q  I  D  D  L  M  F  E  :  L  S  M  W  R  C  N  D  E  L  R  D  R  A  D  E  L  H  R  S  L  K  R  D  E  K  H  Y  I   : E  F  W  K  Q  V  P  P  S  E  P  Y  R  V  I  I  G  D  V  R  D  K  L  Y  H  T  R  E  R  T  R  Q  L  L  S  N  G  F  S  E  I  P  E  E  A  T  Y  T  N  I  K  Q  :  F  L  E  P  L  E  L  C  Y  R  S  L  C  A  C  G  D  R  P  I  A  D  G  S  L  L  D  F  L  R  Q  V  S  T  F  G  L  S  L  V  R  L  D  I  R  Q  E  S  D  R  H  T  D  V  L  D  A  I  T  Q  H  L  E  I  G  S  Y  R  E  W  S  E  E  R  K  Q  E  W  L  L  S  E  L  S  G  K  R  P  L  F  G  P  D  L  P  K  T  E  E  I  D  D  V  L  N  T  F  H  V  I  S  E  L  P  S  D  C  F  G  A  Y  I  I  S  M  A  T  A  P  S  D  V  L  A  V  E  L  L  Q  R  E  C  H  V  K  Q  P  L  R  V  V  P  L  F  E  K  L  D  D  L  D  A  A  P  A  A  I  A  R  L  F  S  I  E  W  Y  K  N  R  I  N  G  K  Q  E  V  M  I  G  Y  S  D  S  G  K  D  A  G  R  L  S  A  A  W  Q  L  Y  K  A  Q  E  E  L  I  K  V  A  K  Q  Y  D  V  K  L  I  M  F  H  G  R  G  G  T  V  G  R  G  G  G  P  S  H  L  A  I  L  S  Q  P  P  D  T  I  Q  G  S  L  R  V  T  V  Q  G  E  V  I  E  Q  S  F  G  E  E  H  L  C  F  R  T  L  Q  R  F  T  S  A  T  L  E  H  G  M  Y  P  P  F  P  P  K  P  E  W  R  A  L  L  D  E  I  S  V  V  A  T  E  K  Y  R  S  I  V  F  K  E  P  R  F  V  E  Y  F  R  L  :  A  T  P  E  L  E  Y  G  R  M  N  I  G  S  R  P  S  K  R  K  R  N  G  G  I  E  T  L  R  A  I  P  W  I  F  A  W  T  Q  T  R  F  H  L  P  V  W  L  G  F  G  A  A  F  K  Y  A  L  N  K  D  K  K  N  L  N  M  L  R  D  M  H  K  K  W  P  F  F  R  V  T  A  D  L  I  E  M  V  F  A  K  G  D  P  G  I  A  A  L  Y  D  K  L  L  V  S  E  D  L  W  S  F  G  E  L  L  R  S  D  Y  E  E  T  K  S  L  L  L  K  :  V  A  G  H  K  E  L  L  E  N  D  P  S  L  K  Q  R  L  R  L  R  D  S  Y  I  T  T  L  N  V  C  Q  A  Y  T  L  K  R  I  R  D  P  T  Y  K  V  T  P  R  P  H  I  T  K  E  Y  I  E  S  K  P  A  A  E  L  V  S  L  N  P  Q  S  E  Y  A  P  G  L  E  D  T  L  I  L  T  M  K  G  I  A  A  G  M  Q  N  T  G  *  I  Y  Y  Y  V  F  M  F  *  W  L  I  K  *  T  L  R  I  M  Y  P  *  V  H  L  F  F  F  F  A  T  S  I  K  W  M  N  N  Y  S  P  L  C  L  V  A  S  *  I  K  L  *  C  K  R  V  L  L  F  I  Y  Q  M  L  F  A  I  </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   : C  C  *  R   : V  R  F  L  M  S :   M  I  L  Y :   S  *  S  R  I  I  E  F  L  R  S  S  *   : D  G  A  T  Q  T  N  I  T  :  R  *  T  R  R  L  G  P  R  K  C  T  T  F  I  K  :  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  *  L  L  L  L  S  R  Y  P  I  C  L  T  W  P  T  W  L  R  R  F  R  L  P  T  V  G  G  Q  S  R  K  R  A  N  F  Q  M  R  A  T  *  *  L  N  P  T  L  K  K  H  S  R  D  L  *  *  T  *  T  S  L  L  E  K  F  L  M  L  *  R  I  R  L  W  I  W  S  L  L  L  I  R  L  K  L  S  E  D  L  C  F  R  S  M  Q   : G  S  A  I  V  C  L  S  C  M  L  K  T  L  H  P  T  I  K  R  S  W  M  K  L  *  R  G  R :   F  K  L  L  S  A  L  M  K  S  E  G  L  L  Q  H  H  K  M  K  *  E  L  E  *  V  T  S  M  K  Q  F  G  T  V  F  R  S  F  Y  D  V  *  T  Q  L  L  K  T  *  G  L  M  N  E  F  L  I  M  L  L  S  F  S  S  R  L  G  W  V  A  T  V  M  :  V  I  Q  E  *  L  L  R  S  L  E  M  F  A  Y  W  P  E  *  W  Q  R  I  C  T  T  L  R  *  M  I  *  C  L  S :   Y  L  C  G  V  A  M  T  S  F  V  I  G  Q  M  N  Y  T  V  H  *  R  E  T  K  N  T  I  *  :  N  S  G  N  K  F  L  Q  V  N  H  I  V  *  L  L  V  M  *  E  I  S  Y  I  I  H  V  S  V  L  A  N  C  Y  P  M  G  S  L  K  F  L  R  K  Q  H  I  L  T  S  S  S :   S  W  N  L  L  S  S  A  T  D  L  F  V  L  V  G  I  D  Q  L  L  T  E  A  F  W  I  F  Y  D  K  F  L  P  L  D  S  H  L  *  D  L  T  *  D  K  S  R  I  G  T  L  M  S  L  M  P  L  P  S  T  W  K  L  V  H  I  E  S  G  L  R  N  V  N  K  S  G  F  S  L  N  S  A  A  S  D  L  Y  L  D  P  T  Y  Q  K  L  K  K  L  M  M  F  *  I  H  S  M  S  Y  Q  N  F  H  Q  T  A  L  G  H  T  S  S  Q  W  P  L  H  H  L  M  C  L  L  L  S  F  Y  S  V  N  A  T  *  S  N  L  Y  G  *  F  H  F  L  R  N  W  M  I  W  M  L  L  L  L  L  L  H  V  F  F  Q  L  S  G  T  K  T  A  L  M  G  S  K  K  S  *  L  A  T  Q  T  L  E  R  M  L  V  G  C  R  Q  H  G  S  Y  I  R  L  K  R  S  L  *  K  L  P  N  N  M  T  *  S  *  L  C  S  M  A  E  V  V  Q  L  E  E  E  V  V  L  A  I  L  L  Y  Y  L  S  H  L  I  R  F  R  D  L  F  A  *  Q  F  K  V  R  L  L  S  N  H  L  G  R  N  T  C  V  L  G  H  S  N  V  S  L  L  P  P  *  N  M  E  C  I  H  L  S  P  Q  S  Q  N  G  V  H  F  W  M  K  F  L  L  L  L  Q  R  S  I  G  Q  *  Y  S  R  N  P  D  L  S  S  T  S  A  W :   Q  H  P  S  W  S  M  V  E  *  T  L  V  A  V  H  Q  S  V  N  E  M  E  A  *  K  H  L  E  P  F  H  G  Y  L  H  G  P  R  L  G  F  I  C  R  S  G  L  A  L  G  Q  H  L  S  M  H  L  T  R  I  K  K  T  S  I  C  C  G  T  C  T  K  N  G  H  F  L  E  L  L  L  I  *  L  R  W  C  L  L  R  E  T  P  A  L  L  L  Y  T  T  S  F  W  F  L  K  I  C  G  P  S  V  S  F  *  G  L  T  M  R  R  Q  R  A  S  C  L  R :   L  L  D  T  R  N  F  W  R  T  I  P  P  *  N  N  D  S  G  C  V  I  P  I  S  L  L  *  M  S  A  K  L  T  H  *  R  G  F  V  I  Q  P  T  K  S  L  Q  G  L  T  L  P  R  N  T  *  N  R  N  L  L  L  N  S  *  A  *  T  H  K  A  N  M  L  P  A  W  K  T  H  S  S  *  P  *  K  V  L  L  L  E  C  R  I  L  V  K  S  I  T  M  F  L  C  F  N  G  *  *  S  E  H  *  E  S  C  I  L  E  F  I  F  F  F  F  L  Q  L  P  *  N  G  *  I  I  I  P  L  F  V  *  *  L  L  E  *  N  Y  D  V  K  E  Y  F  S  S  F  T  K  C  F  L  Q  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94397" stop="94403"/>
                    <exon start="95353" stop="95400"/>
                    <exon start="96999" stop="97341"/>
                    <exon start="97488" stop="97572"/>
                    <exon start="98191" stop="98413"/>
                    <exon start="98637" stop="98740"/>
                    <exon start="98842" stop="98929"/>
                    <exon start="99199" stop="99353"/>
                    <exon start="99749" stop="100747"/>
                    <exon start="100864" stop="101250"/>
                    <exon start="101349" stop="101642"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2730</number_coding_nucleotides>
                  <number_encoded_amino_acids>910</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HNKINEEAGSKKMHNIHKVFFFFFFFFFFFFFFFFFLIVVAKSISHMLNMANLAEEVQIANSGRAKSKKGELSDESNLMTESDIEETLKRLVVNLNKSPREVFNALKNQTVDLVFTAHPTQAIRRSLLQKHARIRNCLSQLYAKDITPDDKEELDEALEREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWNGVPKFLRRVDTALKNIGIDERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIDDLMFELSMWRCNDELRDRADELHRSLKRDEKHYIEFWKQVPPSEPYRVIIGDVRDKLYHTRERTRQLLSNGFSEIPEEATYTNIKQFLEPLELCYRSLCACGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVLDAITQHLEIGSYREWSEERKQEWLLSELSGKRPLFGPDLPKTEEIDDVLNTFHVISELPSDCFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLDDLDAAPAAIARLFSIEWYKNRINGKQEVMIGYSDSGKDAGRLSAAWQLYKAQEELIKVAKQYDVKLIMFHGRGGTVGRGGGPSHLAILSQPPDTIQGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTSATLEHGMYPPFPPKPEWRALLDEISVVATEKYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKRNGGIETLRAIPWIFAWTQTRFHLPVWLGFGAAFKYALNKDKKNLNMLRDMHKKWPFFRVTADLIEMVFAKGDPGIAALYDKLLVSEDLWSFGELLRSDYEETKSLLLKVAGHKELLENDPSLKQRLRLRDSYITTLNVCQAYTLKRIRDPTYKVTPRPHITKEYIESKPAAELVSLNPQSEYAPGLEDTLILTMKGIAAGMQNTG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="100859" e_stop="101828"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="100859" e_stop="101828" e_length="970"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100859" stop="101481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101249" stop="101828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247719" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101491" stop="101828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101589" stop="101828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397834" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCAGGCAACACCCGAGCTGGAGTATGGTCGAATGAACATTGGTAGCCGTCCATCAAAGCGTAAACGAAATGGAGGCATAGAAACACTTAGAGCCATTCCATGGATATTTGCATGGACCCAGACTAGGTTTCATCTGCCGGTCTGGCTTGGCTTTGGGGCAGCATTTAAGTATGCACTTAACAAGGATAAAAAAAACCTCAATATGCTGCGGGACATGCACAAAAAATGGCCATTTTTTAGAGTTACTGCTGATTTGATTGAGATGGTGTTTGCTAAGGGAGACCCCGGCATTGCTGCTTTATACGACAAGCTTCTGGTTTCTGAAGATTTGTGGTCCTTCGGTGAGCTTTTGAGGTCTGACTATGAGGAGACAAAGAGCCTCCTGCTTAAGGTAAATTACTTTTCACCAAGTTCTCGCACTTAACATACGTTTTTACTCATCATGCTTGATCGCATGATATCCATGTTATCTATGTTTCTTTTGTATAGGTTGCTGGACACAAGGAACTTCTGGAGAACGATCCCTCCTTAAAACAACGACTCAGGCTGCGTGATTCCTATATCACTACTTTAAATGTCTGCCAAGCTTACACACTAAAGAGGATTCGTGATCCAACCTACAAAGTCACTCCAAGGCCTCACATTACCAAGGAATACATAGAATCGAAACCTGCTGCTGAACTCGTGAGCCTGAACCCACAAAGCGAATATGCTCCCGGCTTGGAAGACACACTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAATACTGGTTAAATCTATTACTATGTTTTTATGTTTTAATGGTTGATAAAGTGAACATTAAGAATCATGTATCCTTGAGTTCATCTTTTTTTTTTTTTTGCAACTTCCATAAAATGGATGAATAATTATTCCCCTCTTTGTTTAGTAGCTTCTTGAATAAAATTATGATGTAAAAGAGTACTTCTCTTCATTTACCAA</gDNA_template>
            <first_frame> C  R  Q  H  P  S  W  S  M  V  E  *  T  L  V  A  V  H  Q  S  V  N  E  M  E  A  *  K  H  L  E  P  F  H  G  Y  L  H  G  P  R  L  G  F  I  C  R  S  G  L  A  L  G  Q  H  L  S  M  H  L  T  R  I  K  K  T  S  I  C  C  G  T  C  T  K  N  G  H  F  L  E  L  L  L  I  *  L  R  W  C  L  L  R  E  T  P  A  L  L  L  Y  T  T  S  F  W  F  L  K  I  C  G  P  S  V  S  F  *  G  L  T  M  R  R  Q  R  A  S  C  L  R  *  I  T  F  H  Q  V  L  A  L  N  I  R  F  Y  S  S  C  L  I  A  *  Y  P  C  Y  L  C  F  F  C  I  G  C  W  T  Q  G  T  S  G  E  R  S  L  L  K  T  T  T  Q  A  A  *  F  L  Y  H  Y  F  K  C  L  P  S  L  H  T  K  E  D  S  *  S  N  L  Q  S  H  S  K  A  S  H  Y  Q  G  I  H  R  I  E  T  C  C  *  T  R  E  P  E  P  T  K  R  I  C  S  R  L  G  R  H  T  H  L  D  H  E  R  Y  C  C  W  N  A  E  Y  W  L  N  L  L  L  C  F  Y  V  L  M  V  D  K  V  N  I  K  N  H  V  S  L  S  S  S  F  F  F  F  C  N  F  H  K  M  D  E  *  L  F  P  S  L  F  S  S  F  L  N  K  I  M  M  *  K  S  T  S  L  H  L  P  </first_frame>
            <second_frame>  A  G  N  T  R  A  G  V  W  S  N  E  H  W  *  P  S  I  K  A  *  T  K  W  R  H  R  N  T  *  S  H  S  M  D  I  C  M  D  P  D  *  V  S  S  A  G  L  A  W  L  W  G  S  I  *  V  C  T  *  Q  G  *  K  K  P  Q  Y  A  A  G  H  A  Q  K  M  A  I  F  *  S  Y  C  *  F  D  *  D  G  V  C  *  G  R  P  R  H  C  C  F  I  R  Q  A  S  G  F  *  R  F  V  V  L  R  *  A  F  E  V  *  L  *  G  D  K  E  P  P  A  *  G  K  L  L  F  T  K  F  S  H  L  T  Y  V  F  T  H  H  A  *  S  H  D  I  H  V  I  Y  V  S  F  V  *  V  A  G  H  K  E  L  L  E  N  D  P  S  L  K  Q  R  L  R  L  R  D  S  Y  I  T  T  L  N  V  C  Q  A  Y  T  L  K  R  I  R  D  P  T  Y  K  V  T  P  R  P  H  I  T  K  E  Y  I  E  S  K  P  A  A  E  L  V  S  L  N  P  Q  S  E  Y  A  P  G  L  E  D  T  L  I  L  T  M  K  G  I  A  A  G  M  Q  N  T  G  *  I  Y  Y  Y  V  F  M  F  *  W  L  I  K  *  T  L  R  I  M  Y  P  *  V  H  L  F  F  F  F  A  T  S  I  K  W  M  N  N  Y  S  P  L  C  L  V  A  S  *  I  K  L  *  C  K  R  V  L  L  F  I  Y  Q </second_frame>
            <third_frame>   Q  A  T  P  E  L  E  Y  G  R  M  N  I  G  S  R  P  S  K  R  K  R  N  G  G  I  E  T  L  R  A  I  P  W  I  F  A  W  T  Q  T  R  F  H  L  P  V  W  L  G  F  G  A  A  F  K  Y  A  L  N  K  D  K  K  N  L  N  M  L  R  D  M  H  K  K  W  P  F  F  R  V  T  A  D  L  I  E  M  V  F  A  K  G  D  P  G  I  A  A  L  Y  D  K  L  L  V  S  E  D  L  W  S  F  G  E  L  L  R  S  D  Y  E  E  T  K  S  L  L  L  K  V  N  Y  F  S  P  S  S  R  T  *  H  T  F  L  L  I  M  L  D  R  M  I  S  M  L  S  M  F  L  L  Y  R  L  L  D  T  R  N  F  W  R  T  I  P  P  *  N  N  D  S  G  C  V  I  P  I  S  L  L  *  M  S  A  K  L  T  H  *  R  G  F  V  I  Q  P  T  K  S  L  Q  G  L  T  L  P  R  N  T  *  N  R  N  L  L  L  N  S  *  A  *  T  H  K  A  N  M  L  P  A  W  K  T  H  S  S  *  P  *  K  V  L  L  L  E  C  R  I  L  V  K  S  I  T  M  F  L  C  F  N  G  *  *  S  E  H  *  E  S  C  I  L  E  F  I  F  F  F  F  L  Q  L  P  *  N  G  *  I  I  I  P  L  F  V  *  *  L  L  E  *  N  Y  D  V  K  E  Y  F  S  S  F  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100861" stop="101283"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QATPELEYGRMNIGSRPSKRKRNGGIETLRAIPWIFAWTQTRFHLPVWLGFGAAFKYALNKDKKNLNMLRDMHKKWPFFRVTADLIEMVFAKGDPGIAALYDKLLVSEDLWSFGELLRSDYEETKSLLLKVNYFSPSSRT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101349" stop="101642"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAGHKELLENDPSLKQRLRLRDSYITTLNVCQAYTLKRIRDPTYKVTPRPHITKEYIESKPAAELVSLNPQSEYAPGLEDTLILTMKGIAAGMQNTG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="84786" e_stop="85433"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="84786" e_stop="85433" e_length="648"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84786" stop="85433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84787" stop="85170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACATCAAAAACTGGGAGTCTTGATAAACAGGTGGAGTTTCAAGTCATTCAGAATGAGAGCGATTTGAAAGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTTCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTAAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCTCTACTTACAAAGAAGCCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATAGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGTTTTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGATGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTACACATTAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  I  K  N  W  E  S  *  *  T  G  G  V  S  S  H  S  E  *  E  R  F  E  R  T  *  R  G  G  S  R  A  T  D  R  N  *  Y  F  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  S  T  Y  K  E  A  I  L  S  P  D  S  E  K  W  F  A  A  I  G  D  E  M  E  S  L  H  K  N  Q  T  W  V  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  D  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  T  H  *  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </first_frame>
            <second_frame>  T  S  K  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  S  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  K  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  L  L  *  E  M  R  W  S  P  Y  T  R  I  R  H  G  F  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  M  E  S  S  I  K  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </second_frame>
            <third_frame>   H  Q  K  L  G  V  L  I  N  R  W  S  F  K  S  F  R  M  R  A  I  *  K  N  L  K  R  R  I  K  S  H  R  Q  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  L  Y  L  Q  R  S  H  F  K  S  *  F  *  K  M  V  C  C  Y  R  R  *  D  G  V  P  T  Q  E  S  D  M  G  F  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  W  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  Y  T  L  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85044" stop="85358"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASTYKEAILSPDSEKWFAAIGDEMESLHKNQTWVLVIQPSGRKIITCKWVFKKKEGISPADGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVTH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84787" stop="85071"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSKTGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDISESMPSDIHQSIAQDRPRRVGVRPPTRYGFKDMVGYALQVAEEVDTSEPLLTKKPF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85105" stop="85341"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMRWSPYTRIRHGFWSYSLRGERLLLANGFSRRRKGYHQQMESSIKPGLLPEVSTKEREWTTMRSSHQWSDILPSECY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="85444" e_stop="86251"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="85444" e_stop="86251" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85444" stop="86251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTACAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAAGGATGATACATTCATCTATCTGATGCTTTATGTACATGATATGCTGATAGCTGCAAAGAAGAAGTATGATATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTCTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCTATTGATACCCCCAGTGCTGCCAATATCCATCTCACTACCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCAGGAGTCCCTTATGCTAGTGCCATAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTTCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCTGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  F  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  T  K  G  L  T  A  I  W  *  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  R  M  I  H  S  S  I  *  C  F  M  Y  M  I  C  *  *  L  Q  R  R  S  M  I  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  L  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  Q  E  S  L  M  L  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  F  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  L  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  S  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  Q  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  G  *  Y  I  H  L  S  D  A  L  C  T  *  Y  A  D  S  C  K  E  E  V  *  Y  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  S  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  Y  *  Y  P  Q  C  C  Q  Y  P  S  H  Y  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  R  S  P  L  C  *  C  H  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  S  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  *  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  K  D  D  T  F  I  Y  L  M  L  Y  V  H  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  T  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  G  V  P  Y  A  S  A  I  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85446" stop="86249"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLKDDTFIYLMLYVHDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTTMFAPQSEEEKEYMSGVPYASAIGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="105529" PGL_stop="107565"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105529" e_stop="105644"/>
            <exon e_start="105723" e_stop="105861"/>
            <exon e_start="106621" e_stop="106817"/>
            <exon e_start="106930" e_stop="107019"/>
            <exon e_start="107102" e_stop="107565"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.918" acc_prob="0.977" e_score="0.966"/>
          <exon-intron don_prob="0.989" acc_prob="0.972" e_score="0.978"/>
          <exon-intron don_prob="0.894" acc_prob="0.947" e_score="0.975"/>
          <exon-intron don_prob="0.000" acc_prob="0.965" e_score="0.967"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="105529" e_stop="105644" e_length="116"/>
          </exon>
          <intron i_serial="1" don_prob="0.918" acc_prob="0.977">
            <gDNA_intron_boundary i_start="105645" i_stop="105722" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="105723" e_stop="105861" e_length="139"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.972">
            <gDNA_intron_boundary i_start="105862" i_stop="106620" i_length="759"/>
          </intron>
          <exon e_serial="3" e_score="0.975">
            <gDNA_exon_boundary e_start="106621" e_stop="106817" e_length="197"/>
          </exon>
          <intron i_serial="3" don_prob="0.894" acc_prob="0.947">
            <gDNA_intron_boundary i_start="106818" i_stop="106929" i_length="112"/>
          </intron>
          <exon e_serial="4" e_score="0.967">
            <gDNA_exon_boundary e_start="106930" e_stop="107019" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.965">
            <gDNA_intron_boundary i_start="107020" i_stop="107101" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="107102" e_stop="107565" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105529" stop="105644"/>
              <exon start="105723" stop="105861"/>
              <exon start="106621" stop="106817"/>
              <exon start="106930" stop="107019"/>
              <exon start="107102" stop="107198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106954" stop="107019"/>
              <exon start="107102" stop="107504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107145" stop="107565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107216" stop="107508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624010" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTTCTGTACCCAATATATCCACTTATCTGTGTTGCTGCTTCTGCTGTGATTGAGAGCTTTCCTGATCTGTTCAGGGATAAGTACAATCCCAACGGTACATCCACTCTAGTTAAG : ATAGCGAAAATTCTCAGACCTCTAGCTCTTGGTTTGATTCTTTGTGTCTCCCATGCTCGGACATTTTCACTTATTAATGGTTATTCAGCTCCTATTGAGATATACAAGCATTTGGACTACCATGATGACGCTGGACCAG : GTTCTGTCCTTTGCGTTGGTAGTGAGTGGCACCGGTTCCCTTCTTCCTTCTTCATTCCTGATTATGTGAGCCAAGTTCGATGGCTGGATGATGGATTCACAGGCCTTCTCCCAATCCCGTTCAATTCTAGCTTGGGTGGGACCTCGGCGGCACCATCTTACTTCAATAATAAGAACAAGGCATCAGAGAGGCAATAT : CTTAAGGATCCTGAGCAATGCACATTGCTGATAGAGCTGCAACTTCAACGTCCTTATCCTACGCGAGGGAGTGACATGTCTACATGGGAG : ATTGTTGCAGCACTTCCATACCTGGACAGGGAACTATCACCTCCATTGCATCGATCATTCTTTATTCCAAATCAATGGCAGCAGAAGAATGTCTTTGGCCAGTACAGATTACTCAGGAGAATACAAAAGTGATCGCAGATGTACACGCTGAATTTTCTGTTGTCCAGCAGCTTTTAACTCTCTCGGTATAGTACTACGCTAATGTCGACTAGTTTAGTTTTTGTAGTCTGAAACTGCCTACACTTTCGAGGGTAGCAAGTTGAATTAAGTTAAGTTATTGGATCTTCCATTAATTTTGGAAGTCAGATTTTGCATTACATTTTTGTTGGTGTAGATTACACAGATGGGTGTTTAAATTTTGATTAGGAAGCAAATAGTCGAAGTCTCTTATTGGCATTGTTGAAAATGTATCAGTTTAATTTGGTTCCAGTTACTATATATGCTCAAAGTTGTAAAAAGTTAAG</gDNA_template>
            <first_frame> D  F  C  T  Q  Y  I  H  L  S  V  L  L  L  L  L  *  L  R  A  F  L  I  C  S  G  I  S  T  I  P  T  V  H  P  L  *  L  R :   *  R  K  F  S  D  L  *  L  L  V  *  F  F  V  S  P  M  L  G  H  F  H  L  L  M  V  I  Q  L  L  L  R  Y  T  S  I  W  T  T  M  M  T  L  D  Q  :  V  L  S  F  A  L  V  V  S  G  T  G  S  L  L  P  S  S  F  L  I  M  *  A  K  F  D  G  W  M  M  D  S  Q  A  F  S  Q  S  R  S  I  L  A  W  V  G  P  R  R  H  H  L  T  S  I  I  R  T  R  H  Q  R  G  N  I :   L  R  I  L  S  N  A  H  C  *  *  S  C  N  F  N  V  L  I  L  R  E  G  V  T  C  L  H  G  R :   L  L  Q  H  F  H  T  W  T  G  N  Y  H  L  H  C  I  D  H  S  L  F  Q  I  N  G  S  R  R  M  S  L  A  S  T  D  Y  S  G  E  Y  K  S  D  R  R  C  T  R  *  I  F  C  C  P  A  A  F  N  S  L  G  I  V  L  R  *  C  R  L  V  *  F  L  *  S  E  T  A  Y  T  F  E  G  S  K  L  N  *  V  K  L  L  D  L  P  L  I  L  E  V  R  F  C  I  T  F  L  L  V  *  I  T  Q  M  G  V  *  I  L  I  R  K  Q  I  V  E  V  S  Y  W  H  C  *  K  C  I  S  L  I  W  F  Q  L  L  Y  M  L  K  V  V  K  S  *  </first_frame>
            <second_frame>  I  S  V  P  N  I  S  T  Y  L  C  C  C  F  C  C  D  *  E  L  S  *  S  V  Q  G  *  V  Q  S  Q  R  Y  I  H  S  S  *   : D  S  E  N  S  Q  T  S  S  S  W  F  D  S  L  C  L  P  C  S  D  I  F  T  Y  *  W  L  F  S  S  Y  *  D  I  Q  A  F  G  L  P  *  *  R  W  T  R :   F  C  P  L  R  W  *  *  V  A  P  V  P  F  F  L  L  H  S  *  L  C  E  P  S  S  M  A  G  *  W  I  H  R  P  S  P  N  P  V  Q  F  *  L  G  W  D  L  G  G  T  I  L  L  Q  *  *  E  Q  G  I  R  E  A  I   : S  *  G  S  *  A  M  H  I  A  D  R  A  A  T  S  T  S  L  S  Y  A  R  E  *  H  V  Y  M  G   : D  C  C  S  T  S  I  P  G  Q  G  T  I  T  S  I  A  S  I  I  L  Y  S  K  S  M  A  A  E  E  C  L  W  P  V  Q  I  T  Q  E  N  T  K  V  I  A  D  V  H  A  E  F  S  V  V  Q  Q  L  L  T  L  S  V  *  Y  Y  A  N  V  D  *  F  S  F  C  S  L  K  L  P  T  L  S  R  V  A  S  *  I  K  L  S  Y  W  I  F  H  *  F  W  K  S  D  F  A  L  H  F  C  W  C  R  L  H  R  W  V  F  K  F  *  L  G  S  K  *  S  K  S  L  I  G  I  V  E  N  V  S  V  *  F  G  S  S  Y  Y  I  C  S  K  L  *  K  V  K </second_frame>
            <third_frame>   F  L  Y  P  I  Y  P  L  I  C  V  A  A  S  A  V  I  E  S  F  P  D  L  F  R  D  K  Y  N  P  N  G  T  S  T  L  V  K  :  I  A  K  I  L  R  P  L  A  L  G  L  I  L  C  V  S  H  A  R  T  F  S  L  I  N  G  Y  S  A  P  I  E  I  Y  K  H  L  D  Y  H  D  D  A  G  P   : G  S  V  L  C  V  G  S  E  W  H  R  F  P  S  S  F  F  I  P  D  Y  V  S  Q  V  R  W  L  D  D  G  F  T  G  L  L  P  I  P  F  N  S  S  L  G  G  T  S  A  A  P  S  Y  F  N  N  K  N  K  A  S  E  R  Q  Y  :  L  K  D  P  E  Q  C  T  L  L  I  E  L  Q  L  Q  R  P  Y  P  T  R  G  S  D  M  S  T  W  E  :  I  V  A  A  L  P  Y  L  D  R  E  L  S  P  P  L  H  R  S  F  F  I  P  N  Q  W  Q  Q  K  N  V  F  G  Q  Y  R  L  L  R  R  I  Q  K  *  S  Q  M  Y  T  L  N  F  L  L  S  S  S  F  *  L  S  R  Y  S  T  T  L  M  S  T  S  L  V  F  V  V  *  N  C  L  H  F  R  G  *  Q  V  E  L  S  *  V  I  G  S  S  I  N  F  G  S  Q  I  L  H  Y  I  F  V  G  V  D  Y  T  D  G  C  L  N  F  D  *  E  A  N  S  R  S  L  L  L  A  L  L  K  M  Y  Q  F  N  L  V  P  V  T  I  Y  A  Q  S  C  K  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105531" stop="105644"/>
                    <exon start="105723" stop="105861"/>
                    <exon start="106621" stop="106817"/>
                    <exon start="106930" stop="107019"/>
                    <exon start="107102" stop="107233"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLYPIYPLICVAASAVIESFPDLFRDKYNPNGTSTLVKIAKILRPLALGLILCVSHARTFSLINGYSAPIEIYKHLDYHDDAGPGSVLCVGSEWHRFPSSFFIPDYVSQVRWLDDGFTGLLPIPFNSSLGGTSAAPSYFNNKNKASERQYLKDPEQCTLLIELQLQRPYPTRGSDMSTWEIVAALPYLDRELSPPLHRSFFIPNQWQQKNVFGQYRLLRRIQK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="108763" PGL_stop="107709"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108763" e_stop="108590"/>
            <exon e_start="108325" e_stop="108247"/>
            <exon e_start="108163" e_stop="107709"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.946" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108763" e_stop="108590" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.996">
            <gDNA_intron_boundary i_start="108589" i_stop="108326" i_length="264"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108325" e_stop="108247" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.946">
            <gDNA_intron_boundary i_start="108246" i_stop="108164" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="108163" e_stop="107709" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108763" stop="108590"/>
              <exon start="108325" stop="108247"/>
              <exon start="108163" stop="108025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108683" stop="108590"/>
              <exon start="108325" stop="108247"/>
              <exon start="108163" stop="107721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108152" stop="107709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269882" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCTTTCAGCAGTACCTCGGATGATTGGAGATGATTTGCGGGGGTTCAATATCAAAACAAATCCATTTCCAGGATTTCCAACAGATCTCCAGCCACTGACAATGGCGTTGCTATCAACGTGCAAGGGTGTCAGCGTCATTGAGGAATCTGTCTTTGAAAATCGTATGAGTCATG : TAACTGAGCTGCAGAAATTTGGAGCTAATATTCAGGTCTCTGGAAGCAGAGCAACTGTTTATGGGAAGGGAAAGGCAAG : TCCACTCCGCGGTTCTCAGGTCAACGCAACTGATTTGCGTGGGGGAATGTCATTGGTTTTGGCTGGTCTGGCTGCTGAAGGAATTACTGAAATCAGTGGAATCTCCCATGTTGATAGGGGTTATGAAAATTTGGAAATGAAACTTCAAGGTCTCGGTGCCAACGTCATAAGGACGACAACAACAACATTCCCCGTGTAATCCCACCAGGTGAGGTCTGGAAAAGAATGTGTATAACTTCCGGGTTTACTCGTGTAGGACTTATAAGTAAAGATCGAAGAGCAAGCTTGAAGAATAGCTGGGGATGTTGAAACTGTGAGATTATTCATTGCATTTCGCAATAGCCAAATTTTGCAGCTTTAGACAAGGCTCATTTGTCGATTTCTATAATCAGCTTAATTGTCACTAAACATAGTAATTCATAACTACTTTGATTTGCCCAAGAGTCTTTCGGAAA</gDNA_template>
            <first_frame> S  F  Q  Q  Y  L  G  *  L  E  M  I  C  G  G  S  I  S  K  Q  I  H  F  Q  D  F  Q  Q  I  S  S  H  *  Q  W  R  C  Y  Q  R  A  R  V  S  A  S  L  R  N  L  S  L  K  I  V  *  V  M  :  *  L  S  C  R  N  L  E  L  I  F  R  S  L  E  A  E  Q  L  F  M  G  R  E  R  Q   : V  H  S  A  V  L  R  S  T  Q  L  I  C  V  G  E  C  H  W  F  W  L  V  W  L  L  K  E  L  L  K  S  V  E  S  P  M  L  I  G  V  M  K  I  W  K  *  N  F  K  V  S  V  P  T  S  *  G  R  Q  Q  Q  H  S  P  C  N  P  T  R  *  G  L  E  K  N  V  Y  N  F  R  V  Y  S  C  R  T  Y  K  *  R  S  K  S  K  L  E  E  *  L  G  M  L  K  L  *  D  Y  S  L  H  F  A  I  A  K  F  C  S  F  R  Q  G  S  F  V  D  F  Y  N  Q  L  N  C  H  *  T  *  *  F  I  T  T  L  I  C  P  R  V  F  R  K </first_frame>
            <second_frame>  A  F  S  S  T  S  D  D  W  R  *  F  A  G  V  Q  Y  Q  N  K  S  I  S  R  I  S  N  R  S  P  A  T  D  N  G  V  A  I  N  V  Q  G  C  Q  R  H  *  G  I  C  L  *  K  S  Y  E  S  C :   N  *  A  A  E  I  W  S  *  Y  S  G  L  W  K  Q  S  N  C  L  W  E  G  K  G  K  :  S  T  P  R  F  S  G  Q  R  N  *  F  A  W  G  N  V  I  G  F  G  W  S  G  C  *  R  N  Y  *  N  Q  W  N  L  P  C  *  *  G  L  *  K  F  G  N  E  T  S  R  S  R  C  Q  R  H  K  D  D  N  N  N  I  P  R  V  I  P  P  G  E  V  W  K  R  M  C  I  T  S  G  F  T  R  V  G  L  I  S  K  D  R  R  A  S  L  K  N  S  W  G  C  *  N  C  E  I  I  H  C  I  S  Q  *  P  N  F  A  A  L  D  K  A  H  L  S  I  S  I  I  S  L  I  V  T  K  H  S  N  S  *  L  L  *  F  A  Q  E  S  F  G   </second_frame>
            <third_frame>   L  S  A  V  P  R  M  I  G  D  D  L  R  G  F  N  I  K  T  N  P  F  P  G  F  P  T  D  L  Q  P  L  T  M  A  L  L  S  T  C  K  G  V  S  V  I  E  E  S  V  F  E  N  R  M  S  H   : V  T  E  L  Q  K  F  G  A  N  I  Q  V  S  G  S  R  A  T  V  Y  G  K  G  K  A  S :   P  L  R  G  S  Q  V  N  A  T  D  L  R  G  G  M  S  L  V  L  A  G  L  A  A  E  G  I  T  E  I  S  G  I  S  H  V  D  R  G  Y  E  N  L  E  M  K  L  Q  G  L  G  A  N  V  I  R  T  T  T  T  T  F  P  V  *  S  H  Q  V  R  S  G  K  E  C  V  *  L  P  G  L  L  V  *  D  L  *  V  K  I  E  E  Q  A  *  R  I  A  G  D  V  E  T  V  R  L  F  I  A  F  R  N  S  Q  I  L  Q  L  *  T  R  L  I  C  R  F  L  *  S  A  *  L  S  L  N  I  V  I  H  N  Y  F  D  L  P  K  S  L  S  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108761" stop="108590"/>
                    <exon start="108325" stop="108247"/>
                    <exon start="108163" stop="107965"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSAVPRMIGDDLRGFNIKTNPFPGFPTDLQPLTMALLSTCKGVSVIEESVFENRMSHVTELQKFGANIQVSGSRATVYGKGKASPLRGSQVNATDLRGGMSLVLAGLAAEGITEISGISHVDRGYENLEMKLQGLGANVIRTTTTTFPV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="-" PGL_start="110850" PGL_stop="109991"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110850" e_stop="109991"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="110850" e_stop="109991" e_length="860"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110850" stop="110359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110827" stop="110326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110752" stop="109991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110752" stop="110039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110752" stop="110112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333749" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAACTTCAACTCCTCAATATCCCAGATTTTCTCTTTTTCTGTTTTAGTTCAATGGGTACATTTTGTTTCTGTTCATCAATGACTTCAAAGTTCAATGTTCCCCAAGTTCTTCCACCTTTAGACCCTAAACTTGTTGTAAATGGTGGGTCTACACTCTCTGGTCATGTCACTGTTAGTGGCTCCAAGAACTCAGCTTTACCTATTCTTGCTGCAACCCTTTGCTGTTCTGGATCTTCAAACCTTAAAAATGTACCCTGTTTATCAGATACTAGAACAATGGCTTCAATCTTGGAGTCTTTGGGTGCTCAAGTTATGAGTTGTGGTGGTGATTTGGTGGTTAACACCGATGGAATTGTGTCTGTAGAGCCTGATTTGAGTTATATTGGGAAACTTAGAGGTGGGTTTTTCGTGATAGGGCCATTACTGGCTAAATTTGGTGAGGCTACTGTCGGGTTACCCGGTGGGTGTGACATTGGGGCCCGACCCATTGATTTTTACATTCATGGTCTACGTGCTCTTGGTGCTACGGTTGAGTTGAGGTCAGTGAACATCATTCGAGTGAATTTCTATTCCTTTTCCGCATACTAACTAAAAGTAGACTGTAGATGTCTCAGTGAGGTGGTGTGAGAGGTTGACAATGACGAGCATTAGGAGTGACAGGGGCAAGCCGAAGAAGCAGTGGGGGAAAGTGATTAGACATGAAATGATGCATCTTGAGTTTACCGAGGACTTGACCTTAGATATGAGGTTTGGAGGCTGGGGAGTAGGTTAGAAGGTTAATTTGCTAGTTGAAAGTTCTCTTGCTTTTCTGCGGGATAAGATTATCGATAGTAGTACTACTCTCGTAGTTTTGTTCTTC</gDNA_template>
            <first_frame> Q  T  S  T  P  Q  Y  P  R  F  S  L  F  L  F  *  F  N  G  Y  I  L  F  L  F  I  N  D  F  K  V  Q  C  S  P  S  S  S  T  F  R  P  *  T  C  C  K  W  W  V  Y  T  L  W  S  C  H  C  *  W  L  Q  E  L  S  F  T  Y  S  C  C  N  P  L  L  F  W  I  F  K  P  *  K  C  T  L  F  I  R  Y  *  N  N  G  F  N  L  G  V  F  G  C  S  S  Y  E  L  W  W  *  F  G  G  *  H  R  W  N  C  V  C  R  A  *  F  E  L  Y  W  E  T  *  R  W  V  F  R  D  R  A  I  T  G  *  I  W  *  G  Y  C  R  V  T  R  W  V  *  H  W  G  P  T  H  *  F  L  H  S  W  S  T  C  S  W  C  Y  G  *  V  E  V  S  E  H  H  S  S  E  F  L  F  L  F  R  I  L  T  K  S  R  L  *  M  S  Q  *  G  G  V  R  G  *  Q  *  R  A  L  G  V  T  G  A  S  R  R  S  S  G  G  K  *  L  D  M  K  *  C  I  L  S  L  P  R  T  *  P  *  I  *  G  L  E  A  G  E  *  V  R  R  L  I  C  *  L  K  V  L  L  L  F  C  G  I  R  L  S  I  V  V  L  L  S  *  F  C  S   </first_frame>
            <second_frame>  K  L  Q  L  L  N  I  P  D  F  L  F  F  C  F  S  S  M  G  T  F  C  F  C  S  S  M  T  S  K  F  N  V  P  Q  V  L  P  P  L  D  P  K  L  V  V  N  G  G  S  T  L  S  G  H  V  T  V  S  G  S  K  N  S  A  L  P  I  L  A  A  T  L  C  C  S  G  S  S  N  L  K  N  V  P  C  L  S  D  T  R  T  M  A  S  I  L  E  S  L  G  A  Q  V  M  S  C  G  G  D  L  V  V  N  T  D  G  I  V  S  V  E  P  D  L  S  Y  I  G  K  L  R  G  G  F  F  V  I  G  P  L  L  A  K  F  G  E  A  T  V  G  L  P  G  G  C  D  I  G  A  R  P  I  D  F  Y  I  H  G  L  R  A  L  G  A  T  V  E  L  R  S  V  N  I  I  R  V  N  F  Y  S  F  S  A  Y  *  L  K  V  D  C  R  C  L  S  E  V  V  *  E  V  D  N  D  E  H  *  E  *  Q  G  Q  A  E  E  A  V  G  E  S  D  *  T  *  N  D  A  S  *  V  Y  R  G  L  D  L  R  Y  E  V  W  R  L  G  S  R  L  E  G  *  F  A  S  *  K  F  S  C  F  S  A  G  *  D  Y  R  *  *  Y  Y  S  R  S  F  V  L  </second_frame>
            <third_frame>   N  F  N  S  S  I  S  Q  I  F  S  F  S  V  L  V  Q  W  V  H  F  V  S  V  H  Q  *  L  Q  S  S  M  F  P  K  F  F  H  L  *  T  L  N  L  L  *  M  V  G  L  H  S  L  V  M  S  L  L  V  A  P  R  T  Q  L  Y  L  F  L  L  Q  P  F  A  V  L  D  L  Q  T  L  K  M  Y  P  V  Y  Q  I  L  E  Q  W  L  Q  S  W  S  L  W  V  L  K  L  *  V  V  V  V  I  W  W  L  T  P  M  E  L  C  L  *  S  L  I  *  V  I  L  G  N  L  E  V  G  F  S  *  *  G  H  Y  W  L  N  L  V  R  L  L  S  G  Y  P  V  G  V  T  L  G  P  D  P  L  I  F  T  F  M  V  Y  V  L  L  V  L  R  L  S  *  G  Q  *  T  S  F  E  *  I  S  I  P  F  P  H  T  N  *  K  *  T  V  D  V  S  V  R  W  C  E  R  L  T  M  T  S  I  R  S  D  R  G  K  P  K  K  Q  W  G  K  V  I  R  H  E  M  M  H  L  E  F  T  E  D  L  T  L  D  M  R  F  G  G  W  G  V  G  *  K  V  N  L  L  V  E  S  S  L  A  F  L  R  D  K  I  I  D  S  S  T  T  L  V  V  L  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110849" stop="110262"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLQLLNIPDFLFFCFSSMGTFCFCSSMTSKFNVPQVLPPLDPKLVVNGGSTLSGHVTVSGSKNSALPILAATLCCSGSSNLKNVPCLSDTRTMASILESLGAQVMSCGGDLVVNTDGIVSVEPDLSYIGKLRGGFFVIGPLLAKFGEATVGLPGGCDIGARPIDFYIHGLRALGATVELRSVNIIRVNFYSFSAY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="-" PGL_start="111963" PGL_stop="111643"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111963" e_stop="111643"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="111963" e_stop="111643" e_length="321"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111963" stop="111643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326687" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGTCTGATACTTCAACAATGGCTTCAATTTTGAAGTCTTTGGGTGCTCGGGTTACGAGTTTTGATGGAGATATTGTGGTTAATACAGATGGGATGGTGTCTGTAGAGCCTGATTTGAGTGATATTGGAAAAATCAGAGGTGGGTTTTTTGTATTAGGGCCATTACTGGCTAGATTTGGTGAAGCTATTGTTGGGTTACCCGGTGGATGTGACATTGGGGCCCGACCCGTTGATCTTTATATTCATGGTCTTCGTGCTCTTGGTGCAACAGTTGAGTTGAGGTTAGTGACTTTTCTAATATTTTTCATTTACTAACTAAA</gDNA_template>
            <first_frame> F  V  *  Y  F  N  N  G  F  N  F  E  V  F  G  C  S  G  Y  E  F  *  W  R  Y  C  G  *  Y  R  W  D  G  V  C  R  A  *  F  E  *  Y  W  K  N  Q  R  W  V  F  C  I  R  A  I  T  G  *  I  W  *  S  Y  C  W  V  T  R  W  M  *  H  W  G  P  T  R  *  S  L  Y  S  W  S  S  C  S  W  C  N  S  *  V  E  V  S  D  F  S  N  I  F  H  L  L  T  K </first_frame>
            <second_frame>  L  S  D  T  S  T  M  A  S  I  L  K  S  L  G  A  R  V  T  S  F  D  G  D  I  V  V  N  T  D  G  M  V  S  V  E  P  D  L  S  D  I  G  K  I  R  G  G  F  F  V  L  G  P  L  L  A  R  F  G  E  A  I  V  G  L  P  G  G  C  D  I  G  A  R  P  V  D  L  Y  I  H  G  L  R  A  L  G  A  T  V  E  L  R  L  V  T  F  L  I  F  F  I  Y  *  L   </second_frame>
            <third_frame>   C  L  I  L  Q  Q  W  L  Q  F  *  S  L  W  V  L  G  L  R  V  L  M  E  I  L  W  L  I  Q  M  G  W  C  L  *  S  L  I  *  V  I  L  E  K  S  E  V  G  F  L  Y  *  G  H  Y  W  L  D  L  V  K  L  L  L  G  Y  P  V  D  V  T  L  G  P  D  P  L  I  F  I  F  M  V  F  V  L  L  V  Q  Q  L  S  *  G  *  *  L  F  *  Y  F  S  F  T  N  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111962" stop="111648"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSDTSTMASILKSLGARVTSFDGDIVVNTDGMVSVEPDLSDIGKIRGGFFVLGPLLARFGEAIVGLPGGCDIGARPVDLYIHGLRALGATVELRLVTFLIFFIY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="27" PGL_strand="+" PGL_start="113485" PGL_stop="114306"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113485" e_stop="113680"/>
            <exon e_start="113781" e_stop="114306"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.971"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="113485" e_stop="113680" e_length="196"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="113681" i_stop="113780" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="113781" e_stop="114306" e_length="526"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113485" stop="113680"/>
              <exon start="113781" stop="114305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373981" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113486" stop="113680"/>
              <exon start="113781" stop="114305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113506" stop="113680"/>
              <exon start="113781" stop="114306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113506" stop="113680"/>
              <exon start="113781" stop="114305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547427" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113794" stop="114305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330463" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114055" stop="114305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229608" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114083" stop="114305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229484" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAAAGGAGAATAAATAAACAAACAAAAATAAAAATCAGAAATGGCAAAAGCTATCATCCTCCTCTCCACCCTTTGCGTTTTGGCTGTCGCCAATTTCGCGGTTGCCGACGTTGAAACGTTCAACGTCGAAGGCAAAGTCTTTTGTGATACCTGCCGTCTTGGTTTCGTCACCTCCCTCAGCAATACCCTTGAAG : GTGCCACGGTGCGTATGACGTGCAAGGACATGGAGACACACAACGAGACATTTACAACTGAAGGCAAAACGGATGGTATTGGCAAATATACCTTGAAGGTTGAAGGTGACCATGAGAATGATATCTGTGAGGTTACATTGGTGAACAGCCCAAAAGATGATTGCAAAGAAGTTGTTCCAGATATGGTTAATAACAGAGTTATTTGCAGTAAAAATGTAGGGATGCACAATGCTGTTCGTTTTGTGAACCCATTGTTCTATCAAAAGGACAAACCAATCGATGGTTGCGCAAAACTTGTTGAGGAGATGGAGCTTGTTGATCTATTGATTCTTGAAAATGATAAAGAAGAGAATTAAGAGAGAACATATATAGAGAGAGAGAGCGCTTTTGCATCATTCATCATTTATATATTAAGAAGAATATTAAATCTGTTATAATTTCTCCTTTGATGTGTAACTCAACATGGAAAAATTAAAAAAATTTCCATGATTTTCTAATGAGAAGATCAATAATAGCTTCTTAGAAA</gDNA_template>
            <first_frame> E  K  G  E  *  I  N  K  Q  K  *  K  S  E  M  A  K  A  I  I  L  L  S  T  L  C  V  L  A  V  A  N  F  A  V  A  D  V  E  T  F  N  V  E  G  K  V  F  C  D  T  C  R  L  G  F  V  T  S  L  S  N  T  L  E   : G  A  T  V  R  M  T  C  K  D  M  E  T  H  N  E  T  F  T  T  E  G  K  T  D  G  I  G  K  Y  T  L  K  V  E  G  D  H  E  N  D  I  C  E  V  T  L  V  N  S  P  K  D  D  C  K  E  V  V  P  D  M  V  N  N  R  V  I  C  S  K  N  V  G  M  H  N  A  V  R  F  V  N  P  L  F  Y  Q  K  D  K  P  I  D  G  C  A  K  L  V  E  E  M  E  L  V  D  L  L  I  L  E  N  D  K  E  E  N  *  E  R  T  Y  I  E  R  E  S  A  F  A  S  F  I  I  Y  I  L  R  R  I  L  N  L  L  *  F  L  L  *  C  V  T  Q  H  G  K  I  K  K  I  S  M  I  F  *  *  E  D  Q  *  *  L  L  R   </first_frame>
            <second_frame>  R  K  E  N  K  *  T  N  K  N  K  N  Q  K  W  Q  K  L  S  S  S  S  P  P  F  A  F  W  L  S  P  I  S  R  L  P  T  L  K  R  S  T  S  K  A  K  S  F  V  I  P  A  V  L  V  S  S  P  P  S  A  I  P  L  K  :  V  P  R  C  V  *  R  A  R  T  W  R  H  T  T  R  H  L  Q  L  K  A  K  R  M  V  L  A  N  I  P  *  R  L  K  V  T  M  R  M  I  S  V  R  L  H  W  *  T  A  Q  K  M  I  A  K  K  L  F  Q  I  W  L  I  T  E  L  F  A  V  K  M  *  G  C  T  M  L  F  V  L  *  T  H  C  S  I  K  R  T  N  Q  S  M  V  A  Q  N  L  L  R  R  W  S  L  L  I  Y  *  F  L  K  M  I  K  K  R  I  K  R  E  H  I  *  R  E  R  A  L  L  H  H  S  S  F  I  Y  *  E  E  Y  *  I  C  Y  N  F  S  F  D  V  *  L  N  M  E  K  L  K  K  F  P  *  F  S  N  E  K  I  N  N  S  F  L  E  </second_frame>
            <third_frame>   E  R  R  I  N  K  Q  T  K  I  K  I  R  N  G  K  S  Y  H  P  P  L  H  P  L  R  F  G  C  R  Q  F  R  G  C  R  R  *  N  V  Q  R  R  R  Q  S  L  L  *  Y  L  P  S  W  F  R  H  L  P  Q  Q  Y  P  *  R :   C  H  G  A  Y  D  V  Q  G  H  G  D  T  Q  R  D  I  Y  N  *  R  Q  N  G  W  Y  W  Q  I  Y  L  E  G  *  R  *  P  *  E  *  Y  L  *  G  Y  I  G  E  Q  P  K  R  *  L  Q  R  S  C  S  R  Y  G  *  *  Q  S  Y  L  Q  *  K  C  R  D  A  Q  C  C  S  F  C  E  P  I  V  L  S  K  G  Q  T  N  R  W  L  R  K  T  C  *  G  D  G  A  C  *  S  I  D  S  *  K  *  *  R  R  E  L  R  E  N  I  Y  R  E  R  E  R  F  C  I  I  H  H  L  Y  I  K  K  N  I  K  S  V  I  I  S  P  L  M  C  N  S  T  W  K  N  *  K  N  F  H  D  F  L  M  R  R  S  I  I  A  S  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0079F09.1" strand="+"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113518" stop="113680"/>
                    <exon start="113781" stop="114136"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSEMAKAIILLSTLCVLAVANFAVADVETFNVEGKVFCDTCRLGFVTSLSNTLEGATVRMTCKDMETHNETFTTEGKTDGIGKYTLKVEGDHENDICEVTLVNSPKDDCKEVVPDMVNNRVICSKNVGMHNAVRFVNPLFYQKDKPIDGCAKLVEEMELVDLLILENDKEEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 515 chains have been computed
$ 
$ memory statistics:
$ 1470472 bytes spliced alignments in total
$ 275 spliced alignments have been stored
$ 5347 bytes was the average size of a spliced alignment
$ 41824 bytes predicted gene locations in total
$ 27 predicted gene locations have been stored
$ 1549 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 615 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-07 04:13:42
-->
