<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-11-22 05:09:00"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0085O20-818Sz/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0085O20-818Sz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-818Sz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330426" ref_strand="+" ref_description="SGN-U330426        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT1G51680.2 | Symbol: None | 4-coumarate--CoA ligase 1 / 4-coumaroyl-CoA synthase 1 (4CL1), identical to SP:Q42524 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1) (4-coumaroyl-CoA synthase 1) {Arabidopsis thaliana} | chr1:19163097-19165220 REVERSE | Aliases: None (evalue: 1e-94, score=342) genbank/nr: 4-coumarate:coenzyme(evalue: 6e-98, score=359)">
      <seq>gtgtgacatacacttattccgatgttgatcttgctgccaaaagaatcgccctagggctccacaaactcggtatcgaacaaagagatatcatcatgatcttacttccgaactcgcccgaattcgtgttctcgttcctcggggcatcgttccgaggcgcgataagcacgaccgcgaacccgttctacactccgtccgaaattacgaagcaagcgaaagcatcgaacgcaaagctcatcgtaacgcaatcgtgctacgtcgataaaatcaagcgttacgccgaggaaaatagagttaaaatcgtgtgcgtggacgattccttgctgttgcccgatggatgtcttagtttcgcggagttattattaactaccactcatccatcggacgaaaacaattctaatgatgacaacatcattttatctgatagtgtaaaaattcttcctgatgatgtggtggcattaccttattcgtccggtacgacggggttaccaaaaggagtgatgcttacacataaaggacttgttacaagtgtggcacaacaagttgatggtgaaaaccctaatctttatttccatagtgaagatgtgatcatgtgtgttttgccattgtttcatatttattctctcaattcaattttgctttgtggattgagagttggtgcaactattttgataatgcaaaaatttgagataaaaggtttaatggaattagtggagaaatataaagtaacaattgcaccatttgtgccacctattgtattggctattgcaaaaagtccattgggtagataatatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-818Sz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="9328" stop="10721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9628" g_stop="10421" g_length="794"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="794" r_length="794" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-U330426" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9628" e_stop="10421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGACATACACTTATTCCGATGTTGATCTTGCTGCCAAAAGAATCGCCCTAGGGCTCCACAAACTCGGTATCGAACAAAGAGATATCATCATGATCTTACTTCCGAACTCGCCCGAATTCGTGTTCTCGTTCCTCGGGGCATCGTTCCGAGGCGCGATAAGCACGACCGCGAACCCGTTCTACACTCCGTCCGAAATTACGAAGCAAGCGAAAGCATCGAACGCAAAGCTCATCGTAACGCAATCGTGCTACGTCGATAAAATCAAGCGTTACGCCGAGGAAAATAGAGTTAAAATCGTGTGCGTGGACGATTCCTTGCCGTTGCCCGATGGATGTCTTAGTTTCGCGGAGTTATTATTAACTACCACTCATCCATCGGACGAAAACAATTCTAATGATGACAACATCATTTTATCTGATAGTGTAAAAATTCTTCCTGATGATGTGGTGGCATTACCTTATTCGTCCGGTACGACGGGGTTACCAAAAGGAGTGATGCTTACACATAAAGGACTTGTTACAAGTGTGGCACAACAAGTTGATGGTGAAAACCCTAATCTTTATTTCCATAGTGAAGATGTGATCATGTGTGTTTTGCCATTGTTTCATATTTATTCTCTCAATTCAATTTTGCTTTGTGGATTGAGAGTTGGTGCAACTATTTTGATAATGCAAAAATTTGAGATAAAAGGTTTAATGGAATTAGTGGAGAAATATAAAGTAACAATTGCACCATTTGTGCCACCTATTGTATTGGCTATTGCAAAAAGTCCATT-GGTAGATAAATATGAT</genome_strand>
        <mrna_strand>GTGTGACATACACTTATTCCGATGTTGATCTTGCTGCCAAAAGAATCGCCCTAGGGCTCCACAAACTCGGTATCGAACAAAGAGATATCATCATGATCTTACTTCCGAACTCGCCCGAATTCGTGTTCTCGTTCCTCGGGGCATCGTTCCGAGGCGCGATAAGCACGACCGCGAACCCGTTCTACACTCCGTCCGAAATTACGAAGCAAGCGAAAGCATCGAACGCAAAGCTCATCGTAACGCAATCGTGCTACGTCGATAAAATCAAGCGTTACGCCGAGGAAAATAGAGTTAAAATCGTGTGCGTGGACGATTCCTTGCTGTTGCCCGATGGATGTCTTAGTTTCGCGGAGTTATTATTAACTACCACTCATCCATCGGACGAAAACAATTCTAATGATGACAACATCATTTTATCTGATAGTGTAAAAATTCTTCCTGATGATGTGGTGGCATTACCTTATTCGTCCGGTACGACGGGGTTACCAAAAGGAGTGATGCTTACACATAAAGGACTTGTTACAAGTGTGGCACAACAAGTTGATGGTGAAAACCCTAATCTTTATTTCCATAGTGAAGATGTGATCATGTGTGTTTTGCCATTGTTTCATATTTATTCTCTCAATTCAATTTTGCTTTGTGGATTGAGAGTTGGTGCAACTATTTTGATAATGCAAAAATTTGAGATAAAAGGTTTAATGGAATTAGTGGAGAAATATAAAGTAACAATTGCACCATTTGTGCCACCTATTGTATTGGCTATTGCAAAAAGTCCATTGGGTAGAT-AATATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-818Sz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315930" ref_strand="+" ref_description="SGN-U315930        Tomato 200607 #1 [31 ESTs aligned] arabidopsis/peptide: | Symbol: None | 60S ribosomal protein L7 (RPL7C) | chr2:18256118-18257784 REVERSE | Aliases: None(evalue: 9e-120, score=426) genbank/nr: gi|445613|prf||1909359B ribosomal protein L7(evalue: 4e-135, score=484)">
      <seq>ggccaatcggccgaatttgagagaaggaagaagactgcagagaagagacgccgccgcagaaatccataggattagagatatgggtgagggaggtgtagtagttccagagtcggtattgaagaagcagaagaggaatgaggagtgggctcttgtaaagaagcaagagcttgcagttgccaagaaaaagagtgttgagaatcgtaaacttatctacaacagagctaaacagtatgctaaggagtactcagagcaggagaaggagttgatccgtttgaagcgcgaggcacgattgaagggaggattctatgttgatccagaggccaagttgctcttcatcatcagaatccgtgggattaacgcaatgcctcctcagactaaaaagattctgcagcttctcagattgcgacagatcttcaacggtgtcttcttgaaagttaacaaggccaccgtgaacatgctgcatagggttgagccatatgtcacatacggctatcccaacttaaagagtatcaaggaattgatctacaaacgaggttatggaaaggtagacaagcagagaattgctttgaccgacaatgctgtagttgagcaggtgttgggcaaacatggaatcatttgcatcgaagatctcgttcacgagatcatcactgtgggaccacacttcaaggaggctaacaacttcctatggcctttccaactcaaggcacctcttggtggactaaaaaagaagagaaaccactacgttgaaggcggtgatgctggaaatcgcgagaatttcatcaatgagctcatcaggaggatgaactaaaacatctctcactaagcaacagttttgtttctttagaagtttgtttttggtgttttgaaccgtttgtaatattgaactagacacatttctgccagaggttaaaaattggtctttggattaagtatgctaattgcctctggttttttcattgttcaatattaaaatggaagtgtgctttgttcaatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-818Sz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="14565" stop="17754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14869" g_stop="14926" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="70" r_length="58" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14927" i_stop="15284" i_length="358">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15285" g_stop="15467" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="253" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15468" i_stop="15557" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15558" g_stop="15655" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="351" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15656" i_stop="15735" i_length="80">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15736" g_stop="15793" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="409" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15794" i_stop="16564" i_length="771">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16565" g_stop="16644" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="489" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16645" i_stop="16750" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16751" g_stop="16853" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="592" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16854" i_stop="17048" i_length="195">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17049" g_stop="17451" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="995" r_length="403" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="996" polyA_stop="1043"/>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-U315930" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>983</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14869" e_stop="14926"/>
          <exon e_start="15285" e_stop="15467"/>
          <exon e_start="15558" e_stop="15655"/>
          <exon e_start="15736" e_stop="15793"/>
          <exon e_start="16565" e_stop="16644"/>
          <exon e_start="16751" e_stop="16853"/>
          <exon e_start="17049" e_stop="17451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTTCAGGGAAGGAAGAAGACTGCAGAGAAGAGACGCCGCCGCAGAAATCCATAGGGTAATCAAATTCTCATCTTCGATTTATGTTTCTCTTATGAATTTATCGATCTTCTGAGCATTTCACAAAAAAAAATCATCTTTTTTGAGCTAAAGGAAAAGATACTAGGCTTAGACGTTTTGGAATGAGCTTGTTGTGTATAAAGTTTGAGCATTTGATCGATTCGTTGATTTGGGTTTTAGATAATAGCCTTAGTTTTTGATTTGTTGAAATGGGTTTGTGTCAAAAGCTTCAATTTGTTTGATTCTTGAATTTTTTGTGTGTATGTGTGTGGGAGGAGGAGTGGGGGGTGGGTGTTATCTGTTTTTTTCTGTTCAGAGTATTGCTGTTTCTCTAAAGTTGTATTTTTGTGCTGTAGATTAGAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAGGTAATTTATAAACTAAAATGTCTCAGTAAATGATGCTGATTTTTTCCCTTTGTTATTGAGGTATTTAAGAGTTTCTGTTTATGCATTTAGGAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGGGTAAGATGTTGCTGGATTGTTTAAATCTGGGATTTGATGAATTGATTCCTGTTTATCCACTTGTCATTTTGAATTTTCAGGATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAGGTGAGTTTTTGATGTTTCCTGTTTAATATGTATATAAATATGTAAGAAGATGCTGGTTCTAGTTTTAACCGTCACAAAAATATGATGATCAAATTTATGTATTATTGGATTATGTTTTCCTTTCTCTAGTTTCCTTGCCGCTCTGTAACTTTAAGTGATTCAATCTGCTCAACATGGCTGCAGATTGTACCATTATTAGGTCAGTTACATGTTGTTTTCAATCCAAAAGCTTTAGAATAGAGCATTTAAGCTTCCAATTTCATCTTTTACATCCATGCCAAGATAACCTTTGACATTCAACTTTGATGGAGGAGTTGATTCATTCATTTCATTTTCTAACATCTAGGCTTTACATTATTTAGTCGATTCGTTCATTACACTTTCTTATCATGTAACTTTGCACATAGTTTTATCTTTTACCCTGTGATAGTACATGATTGGACTGCCATTTTACTTGGTACATCTTTTACTTTTTGTGGTTACTTCATGATTTCTACTAGTGAGTTGTTACAAAGACTAAGTTGTGTTGCGGAAGGACATACCAATCTCTGTCCCGGCATTACAGCTATGCTCTTGTTTTAGATTGCCAGTTACTCTTTTCTTTAGATCTTTTCTGAAGATGTGATAACTTGCTATTGAATTGCTTTTAAACTTTTGCACTTTGGATTTTATGTTTGTTTTTCTTTATTTAAGTCTCTTATTGTTCTTGTTTTAGTACTTACCCAGCTCATTTTTGTCTGTCTAATGAGATGACTCTTTGCTATATGACAGATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGGGTATCATTCTATTCTTGTTCTAATGCGTTGTATCCTTCTGAGATTAATTTTGATTTTGGAGTTCCTCTATCTGTTATTGATTGATGAATCTCTTCAATTTTCCCAGCTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCAGAGAATTGCTTTGACCGACAATGCTGTAGTTGAGCAGGTTGGTGCAAAGTATATTTGAAATTCATTCATAGTGTCCCGACAAACCTCTCTTTAACATTATTCGTCTGGATATTTCTTTGGCTATAATATATAATATAAAACATAACATAAATTCAAGAATCCCCTAAGCTTCAAACGAAAGGATACCCTAATCTCTACAGCTTTTTCATCACAATGCGCTCCCATGTTGTAGGTGTTGGGCAAACATGGAATCATTTGCATCGAAGATCTCGTTCACGAGATCATCACTGTGGGACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACCGTTTGTAATATTGAACTAGACACATTTCTGCCAGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTTTTCATTGTTCAATATTAAAATGGAAGTGTGCTTTGTTCAATTT</genome_strand>
        <mrna_strand>GAATTTGAGAGAAGGAAGAAGACTGCAGAGAAGAGACGCCGCCGCAGAAATCCATAGG......................................................................................................................................................................................................................................................................................................................................................................ATTAGAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAG..........................................................................................GAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGG................................................................................GATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGG..........................................................................................................CTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCAGAGAATTGCTTTGACCGACAATGCTGTAGTTGAGCAG...................................................................................................................................................................................................GTGTTGGGCAAACATGGAATCATTTGCATCGAAGATCTCGTTCACGAGATCATCACTGTGGGACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACCGTTTGTAATATTGAACTAGACACATTTCTGCCAGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTTTTCATTGTTCAATATTAAAATGGAAGTGTGCTTTGTTCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-818Sz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315929" ref_strand="+" ref_description="SGN-U315929        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | 60S ribosomal protein L7 (RPL7C) | chr2:18256118-18257784 REVERSE | Aliases: None(evalue: 7e-44, score=174) genbank/nr: gi|445613|prf||1909359B ribosomal protein L7(evalue: 1e-54, score=216)">
      <seq>acgccgccgcagaaatccataggattagagatatgggtgagggaggtgtagtagttccagagtcggtattgaagaagcagaagaggaatgaggagtgggctcttgtaaagaagcaagagcttgcagttgccaagaaaaagagtgttgagaatcgtaaacttatctacaacagagctaaacagtatgctaaggagtactcagagcaggagaaggagttgatccgtttgaagcgcgaggcacgattgaagggaggattctatgttgatccagaggccaagttgctcttcatcatcagaatccgtgggattaacgcaatgcctcctcagactaaaaagattctgcagcttctcagattgcgacaggtgagtttttgatgtttcctgtttaatatgtatataaatatgtaagaagatgctggttctagttttaaccgtcacaaaaatatgatgatcaaatttatgtattattggattatgttttcctttctctagtttccttgccgctctgtaactttaagtgattcaatctgctcaacatggctgcagattgtaccattattaggtcagttacatgttgttttcaatccaaaagctttagaatagagcatttaagcttccaatttcatcttttacatccatgccaagataacctttgacattcaactttgatggaggagttgattcattcatttcattttctaacatctaggctttacattatttagtcgattcgttcattacactttcttatcatgtaactttgcacatagttttatcttttaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-818Sz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="14604" stop="16516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14904" g_stop="14926" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14927" i_stop="15284" i_length="358">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15285" g_stop="15467" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="206" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15468" i_stop="15557" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15558" g_stop="15655" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="304" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15656" i_stop="15735" i_length="80">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15736" g_stop="16216" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="785" r_length="481" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-U315929" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14904" e_stop="14926"/>
          <exon e_start="15285" e_stop="15467"/>
          <exon e_start="15558" e_stop="15655"/>
          <exon e_start="15736" e_stop="16216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCCGCCGCAGAAATCCATAGGGTAATCAAATTCTCATCTTCGATTTATGTTTCTCTTATGAATTTATCGATCTTCTGAGCATTTCACAAAAAAAAATCATCTTTTTTGAGCTAAAGGAAAAGATACTAGGCTTAGACGTTTTGGAATGAGCTTGTTGTGTATAAAGTTTGAGCATTTGATCGATTCGTTGATTTGGGTTTTAGATAATAGCCTTAGTTTTTGATTTGTTGAAATGGGTTTGTGTCAAAAGCTTCAATTTGTTTGATTCTTGAATTTTTTGTGTGTATGTGTGTGGGAGGAGGAGTGGGGGGTGGGTGTTATCTGTTTTTTTCTGTTCAGAGTATTGCTGTTTCTCTAAAGTTGTATTTTTGTGCTGTAGATTAGAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAGGTAATTTATAAACTAAAATGTCTCAGTAAATGATGCTGATTTTTTCCCTTTGTTATTGAGGTATTTAAGAGTTTCTGTTTATGCATTTAGGAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGGGTAAGATGTTGCTGGATTGTTTAAATCTGGGATTTGATGAATTGATTCCTGTTTATCCACTTGTCATTTTGAATTTTCAGGATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAGGTGAGTTTTTGATGTTTCCTGTTTAATATGTATATAAATATGTAAGAAGATGCTGGTTCTAGTTTTAACCGTCACAAAAATATGATGATCAAATTTATGTATTATTGGATTATGTTTTCCTTTCTCTAGTTTCCTTGCCGCTCTGTAACTTTAAGTGATTCAATCTGCTCAACATGGCTGCAGATTGTACCATTATTAGGTCAGTTACATGTTGTTTTCAATCCAAAAGCTTTAGAATAGAGCATTTAAGCTTCCAATTTCATCTTTTACATCCATGCCAAGATAACCTTTGACATTCAACTTTGATGGAGGAGTTGATTCATTCATTTCATTTTCTAACATCTAGGCTTTACATTATTTAGTCGATTCGTTCATTACACTTTCTTATCATGTAACTTTGCACATAGTTTTATCTTTTACCCT</genome_strand>
        <mrna_strand>ACGCCGCCGCAGAAATCCATAGG......................................................................................................................................................................................................................................................................................................................................................................ATTAGAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAG..........................................................................................GAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGG................................................................................GATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAGGTGAGTTTTTGATGTTTCCTGTTTAATATGTATATAAATATGTAAGAAGATGCTGGTTCTAGTTTTAACCGTCACAAAAATATGATGATCAAATTTATGTATTATTGGATTATGTTTTCCTTTCTCTAGTTTCCTTGCCGCTCTGTAACTTTAAGTGATTCAATCTGCTCAACATGGCTGCAGATTGTACCATTATTAGGTCAGTTACATGTTGTTTTCAATCCAAAAGCTTTAGAATAGAGCATTTAAGCTTCCAATTTCATCTTTTACATCCATGCCAAGATAACCTTTGACATTCAACTTTGATGGAGGAGTTGATTCATTCATTTCATTTTCTAACATCTAGGCTTTACATTATTTAGTCGATTCGTTCATTACACTTTCTTATCATGTAACTTTGCACATAGTTTTATCTTTTACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-818Sz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344226" ref_strand="+" ref_description="SGN-U344226        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 2e-07, score=59.3)">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-818Sz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="-" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="59053" stop="57996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58753" g_stop="58295" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="-" ref_id="SGN-U344226" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58753" e_stop="58295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTATAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAATAGTTTAAATTTTTTTTCTTTAAACTAAGGAATGAAAG-AAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATGCCTTGAACTTTGATAAAAGAATCATATATATCCCTAAATAATTTTTTT--AAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAATTTCCATTAAATGAAGGGTATATGTGAGCCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAGCCACTTTTATAACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGGGATATATCAGACCCTTTTCTCTTACTTTGTTCCATTCATAA</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTATTTTTTAAAATTTCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-818Sz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343235" ref_strand="+" ref_description="SGN-U343235        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT3G04690.1 | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069 | chr3:1273392-1275944 REVERSE | Aliases: F7O18.16, F7O18_16 (evalue: 2e-33, score=139) genbank/nr: gi|15229329|ref|NP_187120.1| protein kinase family [Arabidopsis thaliana] gi|6175184|gb|AAF04910.1| putative protein kinase [Arabidopsis thaliana](evalue: 1e-31, score=139)">
      <seq>tttttttttttatataaccaatttgtttattcgattgtaaattgttctactagtttatctgtttactttcttgaataataacgcggaccaaatagagattcagtcttagaaaataagacttgtgctaaccataagcagtgcagctataacattgaacatgcttcactcgcagggaagcaataatgaaggcactaagaataacagaggtacaagctacaagtgtattttttttccacccccagtctaggaggattattagtacttccatgtaccatccacatgactcgaacacccaacctacctgttggaaatgaaggtgctgtacaagctaagcaagcttcatggtcaattataaactctcttcataattgctagtattgacaggaaacatctaaacaaaaacaaaagcacaacggtagaactaagcaactatctaccttgtggatttacaatttgtgagaagacagtgtccgtgctgtcctctgctgactccttaccttcttctgcaaccgttaacaactctttatgcatagcataggcatcattagctttctgttccgccaccatttttggttcatcgggatcactttgcaactgaaggcagtactcaagattccacagcactgaacccattgaaggacgatcagttccgtgatcagacaaacaactcactgctgtatcgatgaattgcttcagacattcttctataatctcccctttaatatgtggatccataagttccttggtagtatttttcctatggcagtgtaatgcccaatctgctagactgacttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-818Sz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="59009" stop="60394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59299" g_stop="60094" g_length="796"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="796" r_length="796" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-U343235" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59299" e_stop="60094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGCATGATATATAACCAATTTGTTTATTCGATTGTAAATTGTTCTACTAGTTTATCTGTTTACTTTCTTGAATAATAACGCGGACCAAATAGAGATTCAGTCTCAGAAAATAAGACTTGTGCTAACCATAAGCAGTGCAGCTATAACATTGAACATGCTTCACTCGCAGGGAAGCAATAATGAAGGCACTAAGAATAACAGAGGTACAAGCTACAACTGTATTTTTTTTCCACCCCCAGTCTAGGAGGATTATTAGTACTTCCATGTACCATCCACATGACTCGAACACCCAACCTACCTGTTGGAAATGAAGGTGTTGTACAAGCTAAGCAAGCTTCATGGTCAATTATAAACTCTCTTCATAATTGCTAATATTGACAGGAAACATCTAAACAAAAACAAAAGCACAACGGTAGAACTAAGCAACTATCTACCTTGTGGATTTACAATTTGTGAGAAGACAGTGTCCGTGCTGTCCTCTGCTGACTCCTTACCTTCTTCTGCAACCGTTAACAACTCTTTATGCATAGCATAGGCATCATTAGCTTTCTGTTCCGCCACCATTTTTGGTTCATCGGGATCACTTTGCAACTGAAGGCAGTACTCAAGATTCCACAGCACTGAACCCATTGAAGGACGATCAGTTCCGTGATCAGACAAACAACTCACTGCTGTATCGATGAATTGCTTCAGACATTCTTCTATAATCTCCCCTTTAATATGTGGATCCATAAGTTCCATGGTAGTATTTTTCCTATGGCAGTGTAATGCCCAATCTGCTAGACTGACTTGT</genome_strand>
        <mrna_strand>TTTTTTTTTTTATATAACCAATTTGTTTATTCGATTGTAAATTGTTCTACTAGTTTATCTGTTTACTTTCTTGAATAATAACGCGGACCAAATAGAGATTCAGTCTTAGAAAATAAGACTTGTGCTAACCATAAGCAGTGCAGCTATAACATTGAACATGCTTCACTCGCAGGGAAGCAATAATGAAGGCACTAAGAATAACAGAGGTACAAGCTACAAGTGTATTTTTTTTCCACCCCCAGTCTAGGAGGATTATTAGTACTTCCATGTACCATCCACATGACTCGAACACCCAACCTACCTGTTGGAAATGAAGGTGCTGTACAAGCTAAGCAAGCTTCATGGTCAATTATAAACTCTCTTCATAATTGCTAGTATTGACAGGAAACATCTAAACAAAAACAAAAGCACAACGGTAGAACTAAGCAACTATCTACCTTGTGGATTTACAATTTGTGAGAAGACAGTGTCCGTGCTGTCCTCTGCTGACTCCTTACCTTCTTCTGCAACCGTTAACAACTCTTTATGCATAGCATAGGCATCATTAGCTTTCTGTTCCGCCACCATTTTTGGTTCATCGGGATCACTTTGCAACTGAAGGCAGTACTCAAGATTCCACAGCACTGAACCCATTGAAGGACGATCAGTTCCGTGATCAGACAAACAACTCACTGCTGTATCGATGAATTGCTTCAGACATTCTTCTATAATCTCCCCTTTAATATGTGGATCCATAAGTTCCTTGGTAGTATTTTTCCTATGGCAGTGTAATGCCCAATCTGCTAGACTGACTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="9628" PGL_stop="10421"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9628" e_stop="10421"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="9628" e_stop="10421" e_length="794"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9628" stop="10421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330426" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGTGACATACACTTATTCCGATGTTGATCTTGCTGCCAAAAGAATCGCCCTAGGGCTCCACAAACTCGGTATCGAACAAAGAGATATCATCATGATCTTACTTCCGAACTCGCCCGAATTCGTGTTCTCGTTCCTCGGGGCATCGTTCCGAGGCGCGATAAGCACGACCGCGAACCCGTTCTACACTCCGTCCGAAATTACGAAGCAAGCGAAAGCATCGAACGCAAAGCTCATCGTAACGCAATCGTGCTACGTCGATAAAATCAAGCGTTACGCCGAGGAAAATAGAGTTAAAATCGTGTGCGTGGACGATTCCTTGCCGTTGCCCGATGGATGTCTTAGTTTCGCGGAGTTATTATTAACTACCACTCATCCATCGGACGAAAACAATTCTAATGATGACAACATCATTTTATCTGATAGTGTAAAAATTCTTCCTGATGATGTGGTGGCATTACCTTATTCGTCCGGTACGACGGGGTTACCAAAAGGAGTGATGCTTACACATAAAGGACTTGTTACAAGTGTGGCACAACAAGTTGATGGTGAAAACCCTAATCTTTATTTCCATAGTGAAGATGTGATCATGTGTGTTTTGCCATTGTTTCATATTTATTCTCTCAATTCAATTTTGCTTTGTGGATTGAGAGTTGGTGCAACTATTTTGATAATGCAAAAATTTGAGATAAAAGGTTTAATGGAATTAGTGGAGAAATATAAAGTAACAATTGCACCATTTGTGCCACCTATTGTATTGGCTATTGCAAAAAGTCCATTGGTAGATAAATATGAT</gDNA_template>
            <first_frame> V  *  H  T  L  I  P  M  L  I  L  L  P  K  E  S  P  *  G  S  T  N  S  V  S  N  K  E  I  S  S  *  S  Y  F  R  T  R  P  N  S  C  S  R  S  S  G  H  R  S  E  A  R  *  A  R  P  R  T  R  S  T  L  R  P  K  L  R  S  K  R  K  H  R  T  Q  S  S  S  *  R  N  R  A  T  S  I  K  S  S  V  T  P  R  K  I  E  L  K  S  C  A  W  T  I  P  C  R  C  P  M  D  V  L  V  S  R  S  Y  Y  *  L  P  L  I  H  R  T  K  T  I  L  M  M  T  T  S  F  Y  L  I  V  *  K  F  F  L  M  M  W  W  H  Y  L  I  R  P  V  R  R  G  Y  Q  K  E  *  C  L  H  I  K  D  L  L  Q  V  W  H  N  K  L  M  V  K  T  L  I  F  I  S  I  V  K  M  *  S  C  V  F  C  H  C  F  I  F  I  L  S  I  Q  F  C  F  V  D  *  E  L  V  Q  L  F  *  *  C  K  N  L  R  *  K  V  *  W  N  *  W  R  N  I  K  *  Q  L  H  H  L  C  H  L  L  Y  W  L  L  Q  K  V  H  W  *  I  N  M   </first_frame>
            <second_frame>  C  D  I  H  L  F  R  C  *  S  C  C  Q  K  N  R  P  R  A  P  Q  T  R  Y  R  T  K  R  Y  H  H  D  L  T  S  E  L  A  R  I  R  V  L  V  P  R  G  I  V  P  R  R  D  K  H  D  R  E  P  V  L  H  S  V  R  N  Y  E  A  S  E  S  I  E  R  K  A  H  R  N  A  I  V  L  R  R  *  N  Q  A  L  R  R  G  K  *  S  *  N  R  V  R  G  R  F  L  A  V  A  R  W  M  S  *  F  R  G  V  I  I  N  Y  H  S  S  I  G  R  K  Q  F  *  *  *  Q  H  H  F  I  *  *  C  K  N  S  S  *  *  C  G  G  I  T  L  F  V  R  Y  D  G  V  T  K  R  S  D  A  Y  T  *  R  T  C  Y  K  C  G  T  T  S  *  W  *  K  P  *  S  L  F  P  *  *  R  C  D  H  V  C  F  A  I  V  S  Y  L  F  S  Q  F  N  F  A  L  W  I  E  S  W  C  N  Y  F  D  N  A  K  I  *  D  K  R  F  N  G  I  S  G  E  I  *  S  N  N  C  T  I  C  A  T  Y  C  I  G  Y  C  K  K  S  I  G  R  *  I  *  </second_frame>
            <third_frame>   V  T  Y  T  Y  S  D  V  D  L  A  A  K  R  I  A  L  G  L  H  K  L  G  I  E  Q  R  D  I  I  M  I  L  L  P  N  S  P  E  F  V  F  S  F  L  G  A  S  F  R  G  A  I  S  T  T  A  N  P  F  Y  T  P  S  E  I  T  K  Q  A  K  A  S  N  A  K  L  I  V  T  Q  S  C  Y  V  D  K  I  K  R  Y  A  E  E  N  R  V  K  I  V  C  V  D  D  S  L  P  L  P  D  G  C  L  S  F  A  E  L  L  L  T  T  T  H  P  S  D  E  N  N  S  N  D  D  N  I  I  L  S  D  S  V  K  I  L  P  D  D  V  V  A  L  P  Y  S  S  G  T  T  G  L  P  K  G  V  M  L  T  H  K  G  L  V  T  S  V  A  Q  Q  V  D  G  E  N  P  N  L  Y  F  H  S  E  D  V  I  M  C  V  L  P  L  F  H  I  Y  S  L  N  S  I  L  L  C  G  L  R  V  G  A  T  I  L  I  M  Q  K  F  E  I  K  G  L  M  E  L  V  E  K  Y  K  V  T  I  A  P  F  V  P  P  I  V  L  A  I  A  K  S  P  L  V  D  K  Y  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0085O20.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9630" stop="10421"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTYTYSDVDLAAKRIALGLHKLGIEQRDIIMILLPNSPEFVFSFLGASFRGAISTTANPFYTPSEITKQAKASNAKLIVTQSCYVDKIKRYAEENRVKIVCVDDSLPLPDGCLSFAELLLTTTHPSDENNSNDDNIILSDSVKILPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSEDVIMCVLPLFHIYSLNSILLCGLRVGATILIMQKFEIKGLMELVEKYKVTIAPFVPPIVLAIAKSPLVDKYD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="14869" PGL_stop="17451"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14869" e_stop="14926"/>
            <exon e_start="15285" e_stop="15467"/>
            <exon e_start="15558" e_stop="15655"/>
            <exon e_start="15736" e_stop="15793"/>
            <exon e_start="16565" e_stop="16644"/>
            <exon e_start="16751" e_stop="16853"/>
            <exon e_start="17049" e_stop="17451"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.931"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.964" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="14869" e_stop="14926" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14927" i_stop="15284" i_length="358"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15285" e_stop="15467" e_length="183"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="15468" i_stop="15557" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15558" e_stop="15655" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.991">
            <gDNA_intron_boundary i_start="15656" i_stop="15735" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15736" e_stop="15793" e_length="58"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="15794" i_stop="16564" i_length="771"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16565" e_stop="16644" e_length="80"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.981">
            <gDNA_intron_boundary i_start="16645" i_stop="16750" i_length="106"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16751" e_stop="16853" e_length="103"/>
          </exon>
          <intron i_serial="6" don_prob="0.944" acc_prob="0.964">
            <gDNA_intron_boundary i_start="16854" i_stop="17048" i_length="195"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="17049" e_stop="17451" e_length="403"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14869" stop="14926"/>
              <exon start="15285" stop="15467"/>
              <exon start="15558" stop="15655"/>
              <exon start="15736" stop="15793"/>
              <exon start="16565" stop="16644"/>
              <exon start="16751" stop="16853"/>
              <exon start="17049" stop="17451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315930" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGTTCAGGGAAGGAAGAAGACTGCAGAGAAGAGACGCCGCCGCAGAAATCCATAGG : ATTAGAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAG : GAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGG : GATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAG : ATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGG : CTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCAGAGAATTGCTTTGACCGACAATGCTGTAGTTGAGCAG : GTGTTGGGCAAACATGGAATCATTTGCATCGAAGATCTCGTTCACGAGATCATCACTGTGGGACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACCGTTTGTAATATTGAACTAGACACATTTCTGCCAGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTTTTCATTGTTCAATATTAAAATGGAAGTGTGCTTTGTTCAATTT</gDNA_template>
            <first_frame> Q  V  Q  G  R  K  K  T  A  E  K  R  R  R  R  R  N  P  *   : D  *  R  Y  G  *  G  R  C  S  S  S  R  V  G  I  E  E  A  E  E  E  *  G  V  G  S  C  K  E  A  R  A  C  S  C  Q  E  K  E  C  *  E  S  *  T  Y  L  Q  Q  S  *  T  V  C  *  G  V  L  R  A   : G  E  G  V  D  P  F  E  A  R  G  T  I  E  G  R  I  L  C  *  S  R  G  Q  V  A  L  H  H  Q  N  P  W  :  D  *  R  N  A  S  S  D  *  K  D  S  A  A  S  Q  I  A  T   : D  L  Q  R  C  L  L  E  S  *  Q  G  H  R  E  H  A  A  *  G  *  A  I  C  H  I  R  :  L  S  Q  L  K  E  Y  Q  G  I  D  L  Q  T  R  L  W  K  G  R  Q  A  E  N  C  F  D  R  Q  C  C  S  *  A   : G  V  G  Q  T  W  N  H  L  H  R  R  S  R  S  R  D  H  H  C  G  T  T  L  Q  G  G  *  Q  L  P  M  A  F  P  T  Q  G  T  S  W  W  T  K  K  E  E  K  P  L  R  *  R  R  *  C  W  K  S  R  E  F  H  Q  *  A  H  Q  E  D  E  L  K  H  L  S  L  S  N  S  F  V  S  L  E  V  C  F  W  C  F  E  P  F  V  I  L  N  *  T  H  F  C  Q  R  L  K  I  G  L  W  I  K  Y  A  N  C  L  W  F  F  H  C  S  I  L  K  W  K  C  A  L  F  N   </first_frame>
            <second_frame>  K  F  R  E  G  R  R  L  Q  R  R  D  A  A  A  E  I  H  R  :  I  R  D  M  G  E  G  G  V  V  V  P  E  S  V  L  K  K  Q  K  R  N  E  E  W  A  L  V  K  K  Q  E  L  A  V  A  K  K  K  S  V  E  N  R  K  L  I  Y  N  R  A  K  Q  Y  A  K  E  Y  S  E  Q  :  E  K  E  L  I  R  L  K  R  E  A  R  L  K  G  G  F  Y  V  D  P  E  A  K  L  L  F  I  I  R  I  R  G :   I  N  A  M  P  P  Q  T  K  K  I  L  Q  L  L  R  L  R  Q  :  I  F  N  G  V  F  L  K  V  N  K  A  T  V  N  M  L  H  R  V  E  P  Y  V  T  Y  G :   Y  P  N  L  K  S  I  K  E  L  I  Y  K  R  G  Y  G  K  V  D  K  Q  R  I  A  L  T  D  N  A  V  V  E  Q  :  V  L  G  K  H  G  I  I  C  I  E  D  L  V  H  E  I  I  T  V  G  P  H  F  K  E  A  N  N  F  L  W  P  F  Q  L  K  A  P  L  G  G  L  K  K  K  R  N  H  Y  V  E  G  G  D  A  G  N  R  E  N  F  I  N  E  L  I  R  R  M  N  *  N  I  S  H  *  A  T  V  L  F  L  *  K  F  V  F  G  V  L  N  R  L  *  Y  *  T  R  H  I  S  A  R  G  *  K  L  V  F  G  L  S  M  L  I  A  S  G  F  F  I  V  Q  Y  *  N  G  S  V  L  C  S  I  </second_frame>
            <third_frame>   S  S  G  K  E  E  D  C  R  E  E  T  P  P  Q  K  S  I  G :   L  E  I  W  V  R  E  V  *  *  F  Q  S  R  Y  *  R  S  R  R  G  M  R  S  G  L  L  *  R  S  K  S  L  Q  L  P  R  K  R  V  L  R  I  V  N  L  S  T  T  E  L  N  S  M  L  R  S  T  Q  S  R :   R  R  S  *  S  V  *  S  A  R  H  D  *  R  E  D  S  M  L  I  Q  R  P  S  C  S  S  S  S  E  S  V   : G  L  T  Q  C  L  L  R  L  K  R  F  C  S  F  S  D  C  D  R :   S  S  T  V  S  S  *  K  L  T  R  P  P  *  T  C  C  I  G  L  S  H  M  S  H  T   : A  I  P  T  *  R  V  S  R  N  *  S  T  N  E  V  M  E  R  *  T  S  R  E  L  L  *  P  T  M  L  *  L  S  R :   C  W  A  N  M  E  S  F  A  S  K  I  S  F  T  R  S  S  L  W  D  H  T  S  R  R  L  T  T  S  Y  G  L  S  N  S  R  H  L  L  V  D  *  K  R  R  E  T  T  T  L  K  A  V  M  L  E  I  A  R  I  S  S  M  S  S  S  G  G  *  T  K  T  S  L  T  K  Q  Q  F  C  F  F  R  S  L  F  L  V  F  *  T  V  C  N  I  E  L  D  T  F  L  P  E  V  K  N  W  S  L  D  *  V  C  *  L  P  L  V  F  S  L  F  N  I  K  M  E  V  C  F  V  Q  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0085O20.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14870" stop="14926"/>
                    <exon start="15285" stop="15467"/>
                    <exon start="15558" stop="15655"/>
                    <exon start="15736" stop="15793"/>
                    <exon start="16565" stop="16644"/>
                    <exon start="16751" stop="16853"/>
                    <exon start="17049" stop="17264"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFREGRRLQRRDAAAEIHRIRDMGEGGVVVPESVLKKQKRNEEWALVKKQELAVAKKKSVENRKLIYNRAKQYAKEYSEQEKELIRLKREARLKGGFYVDPEAKLLFIIRIRGINAMPPQTKKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSIKELIYKRGYGKVDKQRIALTDNAVVEQVLGKHGIICIEDLVHEIITVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELIRRMN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="14904" e_stop="14926"/>
            <exon e_start="15285" e_stop="15467"/>
            <exon e_start="15558" e_stop="15655"/>
            <exon e_start="15736" e_stop="16216"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14904" e_stop="14926" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14927" i_stop="15284" i_length="358"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15285" e_stop="15467" e_length="183"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="15468" i_stop="15557" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15558" e_stop="15655" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.991">
            <gDNA_intron_boundary i_start="15656" i_stop="15735" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15736" e_stop="16216" e_length="481"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14904" stop="14926"/>
              <exon start="15285" stop="15467"/>
              <exon start="15558" stop="15655"/>
              <exon start="15736" stop="16216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315929" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACGCCGCCGCAGAAATCCATAGG : ATTAGAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAG : GAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGG : GATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAGGTGAGTTTTTGATGTTTCCTGTTTAATATGTATATAAATATGTAAGAAGATGCTGGTTCTAGTTTTAACCGTCACAAAAATATGATGATCAAATTTATGTATTATTGGATTATGTTTTCCTTTCTCTAGTTTCCTTGCCGCTCTGTAACTTTAAGTGATTCAATCTGCTCAACATGGCTGCAGATTGTACCATTATTAGGTCAGTTACATGTTGTTTTCAATCCAAAAGCTTTAGAATAGAGCATTTAAGCTTCCAATTTCATCTTTTACATCCATGCCAAGATAACCTTTGACATTCAACTTTGATGGAGGAGTTGATTCATTCATTTCATTTTCTAACATCTAGGCTTTACATTATTTAGTCGATTCGTTCATTACACTTTCTTATCATGTAACTTTGCACATAGTTTTATCTTTTACCCT</gDNA_template>
            <first_frame> T  P  P  Q  K  S  I  G :   L  E  I  W  V  R  E  V  *  *  F  Q  S  R  Y  *  R  S  R  R  G  M  R  S  G  L  L  *  R  S  K  S  L  Q  L  P  R  K  R  V  L  R  I  V  N  L  S  T  T  E  L  N  S  M  L  R  S  T  Q  S  R :   R  R  S  *  S  V  *  S  A  R  H  D  *  R  E  D  S  M  L  I  Q  R  P  S  C  S  S  S  S  E  S  V   : G  L  T  Q  C  L  L  R  L  K  R  F  C  S  F  S  D  C  D  R  *  V  F  D  V  S  C  L  I  C  I  *  I  C  K  K  M  L  V  L  V  L  T  V  T  K  I  *  *  S  N  L  C  I  I  G  L  C  F  P  F  S  S  F  L  A  A  L  *  L  *  V  I  Q  S  A  Q  H  G  C  R  L  Y  H  Y  *  V  S  Y  M  L  F  S  I  Q  K  L  *  N  R  A  F  K  L  P  I  S  S  F  T  S  M  P  R  *  P  L  T  F  N  F  D  G  G  V  D  S  F  I  S  F  S  N  I  *  A  L  H  Y  L  V  D  S  F  I  T  L  S  Y  H  V  T  L  H  I  V  L  S  F  T   </first_frame>
            <second_frame>  R  R  R  R  N  P  *   : D  *  R  Y  G  *  G  R  C  S  S  S  R  V  G  I  E  E  A  E  E  E  *  G  V  G  S  C  K  E  A  R  A  C  S  C  Q  E  K  E  C  *  E  S  *  T  Y  L  Q  Q  S  *  T  V  C  *  G  V  L  R  A   : G  E  G  V  D  P  F  E  A  R  G  T  I  E  G  R  I  L  C  *  S  R  G  Q  V  A  L  H  H  Q  N  P  W  :  D  *  R  N  A  S  S  D  *  K  D  S  A  A  S  Q  I  A  T  G  E  F  L  M  F  P  V  *  Y  V  Y  K  Y  V  R  R  C  W  F  *  F  *  P  S  Q  K  Y  D  D  Q  I  Y  V  L  L  D  Y  V  F  L  S  L  V  S  L  P  L  C  N  F  K  *  F  N  L  L  N  M  A  A  D  C  T  I  I  R  S  V  T  C  C  F  Q  S  K  S  F  R  I  E  H  L  S  F  Q  F  H  L  L  H  P  C  Q  D  N  L  *  H  S  T  L  M  E  E  L  I  H  S  F  H  F  L  T  S  R  L  Y  I  I  *  S  I  R  S  L  H  F  L  I  M  *  L  C  T  *  F  Y  L  L  P  </second_frame>
            <third_frame>   A  A  A  E  I  H  R  :  I  R  D  M  G  E  G  G  V  V  V  P  E  S  V  L  K  K  Q  K  R  N  E  E  W  A  L  V  K  K  Q  E  L  A  V  A  K  K  K  S  V  E  N  R  K  L  I  Y  N  R  A  K  Q  Y  A  K  E  Y  S  E  Q  :  E  K  E  L  I  R  L  K  R  E  A  R  L  K  G  G  F  Y  V  D  P  E  A  K  L  L  F  I  I  R  I  R  G :   I  N  A  M  P  P  Q  T  K  K  I  L  Q  L  L  R  L  R  Q  V  S  F  *  C  F  L  F  N  M  Y  I  N  M  *  E  D  A  G  S  S  F  N  R  H  K  N  M  M  I  K  F  M  Y  Y  W  I  M  F  S  F  L  *  F  P  C  R  S  V  T  L  S  D  S  I  C  S  T  W  L  Q  I  V  P  L  L  G  Q  L  H  V  V  F  N  P  K  A  L  E  *  S  I  *  A  S  N  F  I  F  Y  I  H  A  K  I  T  F  D  I  Q  L  *  W  R  S  *  F  I  H  F  I  F  *  H  L  G  F  T  L  F  S  R  F  V  H  Y  T  F  L  S  C  N  F  A  H  S  F  I  F  Y  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0085O20.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14906" stop="14926"/>
                    <exon start="15285" stop="15467"/>
                    <exon start="15558" stop="15655"/>
                    <exon start="15736" stop="15805"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AAAEIHRIRDMGEGGVVVPESVLKKQKRNEEWALVKKQELAVAKKKSVENRKLIYNRAKQYAKEYSEQEKELIRLKREARLKGGFYVDPEAKLLFIIRIRGINAMPPQTKKILQLLRLRQVSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="58753" PGL_stop="58295"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58753" e_stop="58295"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="58753" e_stop="58295" e_length="459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58753" stop="58295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTATAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAATAGTTTAAATTTTTTTTCTTTAAACTAAGGAATGAAAGAAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATGCCTTGAACTTTGATAAAAGAATCATATATATCCCTAAATAATTTTTTTAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAATTTCCATTAAATGAAGGGTATATGTGAGCCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAGCCACTTTTATAACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGGGATATATCAGACCCTTTTCTCTTACTTTGTTCCATTCATAA</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  L  R  I  R  N  *  I  T  I  H  T  K  K  *  F  K  F  F  F  F  K  L  R  N  E  R  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  A  L  N  F  D  K  R  I  I  Y  I  P  K  *  F  F  *  K  N  *  K  *  Q  I  *  I  *  N  *  F  F  N  F  H  *  M  K  G  I  C  E  P  F  C  N  G  R  G  I  C  E  P  F  V  *  R  *  G  H  I  *  A  T  F  I  T  R  D  I  S  A  L  N  D  K  V  E  G  Y  I  R  P  F  S  L  T  L  F  H  S  * </first_frame>
            <second_frame>  Y  Y  R  *  P  N  F  F  F  E  Y  E  I  K  L  Q  Y  T  Q  K  N  S  L  N  F  F  S  L  N  *  G  M  K  E  K  T  K  *  E  *  E  T  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  N  M  P  *  T  L  I  K  E  S  Y  I  S  L  N  N  F  F  K  K  I  R  S  N  K  Y  K  F  K  T  N  F  L  I  S  I  K  *  R  V  Y  V  S  H  F  V  T  A  G  V  Y  V  S  R  L  Y  N  G  K  G  I  Y  E  P  L  L  *  R  G  I  Y  Q  L  *  M  T  K  L  R  D  I  S  D  P  F  L  L  L  C  S  I  H   </second_frame>
            <third_frame>   I  I  D  D  Q  I  F  S  S  N  T  K  L  N  Y  N  T  H  K  K  I  V  *  I  F  F  L  *  T  K  E  *  K  K  K  Q  N  K  N  K  K  L  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  I  K  I  C  L  E  L  *  *  K  N  H  I  Y  P  *  I  I  F  L  K  K  L  E  V  T  N  I  N  L  K  L  I  F  *  F  P  L  N  E  G  Y  M  *  A  I  L  *  R  Q  G  Y  M  *  A  V  C  I  T  V  R  A  Y  M  S  H  F  Y  N  E  G  Y  I  S  S  K  *  Q  S  *  G  I  Y  Q  T  L  F  S  Y  F  V  P  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0085O20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="59299" PGL_stop="60094"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59299" e_stop="60094"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="59299" e_stop="60094" e_length="796"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59299" stop="60094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343235" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACATGCATGATATATAACCAATTTGTTTATTCGATTGTAAATTGTTCTACTAGTTTATCTGTTTACTTTCTTGAATAATAACGCGGACCAAATAGAGATTCAGTCTCAGAAAATAAGACTTGTGCTAACCATAAGCAGTGCAGCTATAACATTGAACATGCTTCACTCGCAGGGAAGCAATAATGAAGGCACTAAGAATAACAGAGGTACAAGCTACAACTGTATTTTTTTTCCACCCCCAGTCTAGGAGGATTATTAGTACTTCCATGTACCATCCACATGACTCGAACACCCAACCTACCTGTTGGAAATGAAGGTGTTGTACAAGCTAAGCAAGCTTCATGGTCAATTATAAACTCTCTTCATAATTGCTAATATTGACAGGAAACATCTAAACAAAAACAAAAGCACAACGGTAGAACTAAGCAACTATCTACCTTGTGGATTTACAATTTGTGAGAAGACAGTGTCCGTGCTGTCCTCTGCTGACTCCTTACCTTCTTCTGCAACCGTTAACAACTCTTTATGCATAGCATAGGCATCATTAGCTTTCTGTTCCGCCACCATTTTTGGTTCATCGGGATCACTTTGCAACTGAAGGCAGTACTCAAGATTCCACAGCACTGAACCCATTGAAGGACGATCAGTTCCGTGATCAGACAAACAACTCACTGCTGTATCGATGAATTGCTTCAGACATTCTTCTATAATCTCCCCTTTAATATGTGGATCCATAAGTTCCATGGTAGTATTTTTCCTATGGCAGTGTAATGCCCAATCTGCTAGACTGACTTGT</gDNA_template>
            <first_frame> T  C  M  I  Y  N  Q  F  V  Y  S  I  V  N  C  S  T  S  L  S  V  Y  F  L  E  *  *  R  G  P  N  R  D  S  V  S  E  N  K  T  C  A  N  H  K  Q  C  S  Y  N  I  E  H  A  S  L  A  G  K  Q  *  *  R  H  *  E  *  Q  R  Y  K  L  Q  L  Y  F  F  S  T  P  S  L  G  G  L  L  V  L  P  C  T  I  H  M  T  R  T  P  N  L  P  V  G  N  E  G  V  V  Q  A  K  Q  A  S  W  S  I  I  N  S  L  H  N  C  *  Y  *  Q  E  T  S  K  Q  K  Q  K  H  N  G  R  T  K  Q  L  S  T  L  W  I  Y  N  L  *  E  D  S  V  R  A  V  L  C  *  L  L  T  F  F  C  N  R  *  Q  L  F  M  H  S  I  G  I  I  S  F  L  F  R  H  H  F  W  F  I  G  I  T  L  Q  L  K  A  V  L  K  I  P  Q  H  *  T  H  *  R  T  I  S  S  V  I  R  Q  T  T  H  C  C  I  D  E  L  L  Q  T  F  F  Y  N  L  P  F  N  M  W  I  H  K  F  H  G  S  I  F  P  M  A  V  *  C  P  I  C  *  T  D  L  </first_frame>
            <second_frame>  H  A  *  Y  I  T  N  L  F  I  R  L  *  I  V  L  L  V  Y  L  F  T  F  L  N  N  N  A  D  Q  I  E  I  Q  S  Q  K  I  R  L  V  L  T  I  S  S  A  A  I  T  L  N  M  L  H  S  Q  G  S  N  N  E  G  T  K  N  N  R  G  T  S  Y  N  C  I  F  F  P  P  P  V  *  E  D  Y  *  Y  F  H  V  P  S  T  *  L  E  H  P  T  Y  L  L  E  M  K  V  L  Y  K  L  S  K  L  H  G  Q  L  *  T  L  F  I  I  A  N  I  D  R  K  H  L  N  K  N  K  S  T  T  V  E  L  S  N  Y  L  P  C  G  F  T  I  C  E  K  T  V  S  V  L  S  S  A  D  S  L  P  S  S  A  T  V  N  N  S  L  C  I  A  *  A  S  L  A  F  C  S  A  T  I  F  G  S  S  G  S  L  C  N  *  R  Q  Y  S  R  F  H  S  T  E  P  I  E  G  R  S  V  P  *  S  D  K  Q  L  T  A  V  S  M  N  C  F  R  H  S  S  I  I  S  P  L  I  C  G  S  I  S  S  M  V  V  F  F  L  W  Q  C  N  A  Q  S  A  R  L  T  C </second_frame>
            <third_frame>   M  H  D  I  *  P  I  C  L  F  D  C  K  L  F  Y  *  F  I  C  L  L  S  *  I  I  T  R  T  K  *  R  F  S  L  R  K  *  D  L  C  *  P  *  A  V  Q  L  *  H  *  T  C  F  T  R  R  E  A  I  M  K  A  L  R  I  T  E  V  Q  A  T  T  V  F  F  F  H  P  Q  S  R  R  I  I  S  T  S  M  Y  H  P  H  D  S  N  T  Q  P  T  C  W  K  *  R  C  C  T  S  *  A  S  F  M  V  N  Y  K  L  S  S  *  L  L  I  L  T  G  N  I  *  T  K  T  K  A  Q  R  *  N  *  A  T  I  Y  L  V  D  L  Q  F  V  R  R  Q  C  P  C  C  P  L  L  T  P  Y  L  L  L  Q  P  L  T  T  L  Y  A  *  H  R  H  H  *  L  S  V  P  P  P  F  L  V  H  R  D  H  F  A  T  E  G  S  T  Q  D  S  T  A  L  N  P  L  K  D  D  Q  F  R  D  Q  T  N  N  S  L  L  Y  R  *  I  A  S  D  I  L  L  *  S  P  L  *  Y  V  D  P  *  V  P  W  *  Y  F  S  Y  G  S  V  M  P  N  L  L  D  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0085O20.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59339" stop="59545"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVLLVYLFTFLNNNADQIEIQSQKIRLVLTISSAAITLNMLHSQGSNNEGTKNNRGTSYNCIFFPPPV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 39 chains have been computed
$ 
$ memory statistics:
$ 9912 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 1982 bytes was the average size of a spliced alignment
$ 9432 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2358 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 50 backtrace matrices have been allocated
$ 
$ date finished: 2008-11-22 05:09:22
-->
