<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-07 04:16:29"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E731859" ref_strand="+" ref_description="SGN-E731859 [LA28BE11]">
      <seq>cccagcactcctacgcacaggaaaaattcccagaacctccttcacgcgcaaagccaccctccttctccttctctctatcgcgcgtggataagcaacggatacttgcgctcctgctgctccgtacagcacaagacgacgcgagtttgtccttggcatcataggatcgagccacgtcgtttgccaaggacgagggatcgatctccaccctccacccttcacctccctttttccgttcgaatcatccgtatttggataagatttcggaatttcgaaatgggaaatgggccgaaattcgtcttacccacccaaaaatcgaaaccctaattatttcctctatataaacccctgtcttcttcacaatagggggttggaaaaaatttttggggggaaattctttggtttttctgtttgtttcgaatgaactaaagaaaattacggagagttggaagaaatttcgggagtcatatttaggattaacatgcatacaaaatactcagagaagttgctcttttcgctttcgtgattaggattggtgagctattcaattctgcgacttttattccgtcattctgtgttcatgttttcgtttgggagaaggttgttgctgttgctgctcgtttccgtctcagtcttgctgctcggagagagcatgtgaaatccctctcgagtccattttgagactccattttcctccttgcatttcggaagagccatgaaggctcgaaaattttttatcgagtcaatctatcaaggcaggcgtaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="11931" stop="15068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12231" g_stop="12878" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="648" r_length="648" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12879" i_stop="14653" i_length="1775">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14654" g_stop="14768" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="763" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E731859" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12231" e_stop="12878"/>
          <exon e_start="14654" e_stop="14768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGCACTCCTACGCACAGGAAAAATTCCCAGAACCTCCTTCACGCGCAAAGCCACCCTCCTTCTCCTTCTCTCTATCGCGCGTGGATAAGCAACGGATACTTGCGCTCCTGCTGCTCCGTACAGCACAAGACGACGCGAGTTTGTCCTTGGCATCATAGGATCGAGCCACGTCGTTTGCCAAGGACGAGGGATCGATCTCCACCCTCCACCCTTCACCTCCCTTTTTCCGTTCGAATCATCCGTATTTGGATAAGATTTCGGAATTTCGAAATGGGAAATGGGCCGAAATTCGTCTTACCCACCCAAAAATCGAAACCCTAATTATTTCCTCTATATAAACCCCTGTCTTCTTCACAATAGGGGGTTGGAAAAAATTTTTGGGGGGAAATTCTTTGGTTTTTCTGTTTGTTTCGAATGAACTAAAGAAAATTACAGAGAGTTGGAAGAAATTTCGGGAGTCATATTTAGGATTAACATGCATACAAAATACTCAAAGAAGTTGCTCTTTTCGCTTTCGTGATTAGGATTGGTGAGCTATTCAATTCTGCGACTTTTATTCCGTCATTCTGTGTTCATGTTTTCGTTTGGGTGAAGGTTGTTGCTGTTGCTGCTCGTTTCCGTCTCAGTCTTGCTGCTCGGAGAAAGGTAATCGCCCTATTAAAGCTTTCTTCTTCCATTTCTAACTTAGCATAATGTTTTGATCATGAAGTTGCTACTGTGATTGTTCCATTGTTATCAACCGAGTTTCTTTTCGTTTTCATTGCTATTGATTCGGTTTCTTTGATCTCTATGAACTTGTTGTTTCATGTCATGTTAATGATCTTTCCTTATCTTCACGGCCATCTTGAATTTTTCTGGTGATAGTTATTTGTTTACAACAAGGTTTAGATGGGAGCTTTGAATCTGTTTCTCATTCTTAAGGGTTTATCCAGTTCCTTTAGTGTGGAGTCCACTGTTTTGTATCGAGTAGCTGGTAATGGTGATTAGTTGTTAAGAATGTTGTGTTAGTTCTTGATATACTTCGCTTGCGCTGAGGCTTTTATTATGGGATGGTACAGTGTGTTTCGTTAATGTTGAAGTTTAGTGTATTCGTTGGTTTGAATGATAGAAAGGGATAATTTCCCATTAAGCTGGGTCTGCAGTTTATTGTTGCTCACTGTTGAGAGGCCTTTCAATGGTGCTTATCGTTATGGAGCCATATTAGCTGTTTGTCTTCTTTTCTCTCATATTACAAGTTCGTAGATAATCTATTTGAAGTTTATCACGCTGAGTTTCTTGATATCTTCACGTGCACCGAGAATCCATCTGGAGCAGCCTCTCTATCATTACAGGGCAGGGGTAAGGCTGAGGCTCCCATTGCGGGATGGTACGGTATGTCTTTTGTTGCTAAGACTGAAACTTTGTGCCCCTCATCGGGATTCTTGGTCTAAGATGGCTTAATGAAATAAGTTTTGATCGACTCTTCCCTTTTTGCTTTTTTTATGTGAAGTTTAAGTAGATTATAGTTTGTTTATCGAATGATCTTCCTATTTGATTACCTCAAGAGTGTTGTAGTGAATTAATGGTATTGTTGTCTATAACACATCATCGCCTGAGTCCCTTCTAATCGAACTTTGTTGAATATATGTTGGTAATCTTTTCTTTACTATGTTGTTTAGTCGTTACATGGGTAGGAAACATCAAAGTGTTTGAGTTATGATTATTTTGGAGTGATCTTTGTTCAACAGTGGCATAATGACCTCTTCTATTTTCTCTTTGCTGTGTTTTCAATATAATGTTAAGAATAATGTGTTTGTTTTAGGGCCCGTTTGGATGGGCTTAATAAAAGCAGCTTTAAAAAAGTACTTTTAAAAGTGCTGAAACTTATTTTAAAAATAAGCAGTTATGTGTTTGGATAAAAGTGCTGAAGTTGTTATGTCAAACGTGAAAAGAGGATAAATGGAAGAAAGAAATGTTAGGGTTATATGGGTAATTTGGAGATTGTATAAAAATATTAAGCACAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAAAAATAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTAACTTAAAATAAACTGTTTTGAGTATTGTCAAACAGCTAAATAAGTCAAAAACCAGCTTTTAAGTCAGTTTGACCAGCTTTTAAGCTGAGCCAAACAGGCTCTTAGTTATTTCTTTTAATTCTGCTGGCCATATTCCTTTCCTAGCCTAAATATCAAGCTCATCCAATCACTTTAGATTGTTGCTGCCTGCAATATGCAAAAATAAAATAAAATGTGTGTTATATCATTGTATGCATTGTTTATGTTACAAGTTGTTTATTGGACTTAGCATGTTAAGATTTCATGTTCCTTTCTTAACTCCATTTTCGTTTGATAGCATGTGAAATCCCTCTCGAGTCCATTTTGAGACTCCATTTTCCTCCTTGCATTTCGGAAGAGCCATGAAGGCTCGAAAATTTTTTATCGAGTCAATCTATCAAGGCAGGCGTACA</genome_strand>
        <mrna_strand>CCCAGCACTCCTACGCACAGGAAAAATTCCCAGAACCTCCTTCACGCGCAAAGCCACCCTCCTTCTCCTTCTCTCTATCGCGCGTGGATAAGCAACGGATACTTGCGCTCCTGCTGCTCCGTACAGCACAAGACGACGCGAGTTTGTCCTTGGCATCATAGGATCGAGCCACGTCGTTTGCCAAGGACGAGGGATCGATCTCCACCCTCCACCCTTCACCTCCCTTTTTCCGTTCGAATCATCCGTATTTGGATAAGATTTCGGAATTTCGAAATGGGAAATGGGCCGAAATTCGTCTTACCCACCCAAAAATCGAAACCCTAATTATTTCCTCTATATAAACCCCTGTCTTCTTCACAATAGGGGGTTGGAAAAAATTTTTGGGGGGAAATTCTTTGGTTTTTCTGTTTGTTTCGAATGAACTAAAGAAAATTACGGAGAGTTGGAAGAAATTTCGGGAGTCATATTTAGGATTAACATGCATACAAAATACTCAGAGAAGTTGCTCTTTTCGCTTTCGTGATTAGGATTGGTGAGCTATTCAATTCTGCGACTTTTATTCCGTCATTCTGTGTTCATGTTTTCGTTTGGGAGAAGGTTGTTGCTGTTGCTGCTCGTTTCCGTCTCAGTCTTGCTGCTCGGAGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTGAAATCCCTCTCGAGTCCATTTTGAGACTCCATTTTCCTCCTTGCATTTCGGAAGAGCCATGAAGGCTCGAAAATTTTTTATCGAGTCAATCTATCAAGGCAGGCGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E347153" ref_strand="+" ref_description="SGN-E347153 [cTOF-25-O15]">
      <seq>aacggtaaatccagacctatgaggaggaaatgcagtaatgtaagatcgtatttgacaaatggtaccattaatgttgagtatgtcaaatcttgtgataatcttgcagatcctcttacgaaggtcttaacaagagaaaaggtctggagcacatcgagggggataggattgaagcctacaaatccttcagtcatatatgaggaaactcaacctgnggaatagagatcctataaccaggttcaaagggaaaaactaatcatatgatgacttgttatgaaaaatacactattttttccctccctatgatgtgagtgcatttgttcctatagtttgtgaaggttgagttgataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="-" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="20806" stop="19856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20506" g_stop="20155" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="-" ref_id="SGN-E347153" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20506" e_stop="20155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGGTAAATCCATACCTATAAAGAGGAAACACAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGATTATGTCAAATCTTGTAATAATCTTGCAGATCCTCTTACGAAGGCCTTAACAAGAGAAAAGGTCTGGAGCACATCGAGGGGGATGGGATTGAAGCCTACAAATCCTTGATTCATATATGAGGAAACCCAACCTGGGGACTAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTGTGAAAAATGCACTATTTTTTTCCCTCCCTATGATGTGAGTGCATTATTTCCTGTAGTTTGTGAAGGTTGAGTTAATAAAAC</genome_strand>
        <mrna_strand>AACGGTAAATCCAGACCTATGAGGAGGAAATGCAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGAGTATGTCAAATCTTGTGATAATCTTGCAGATCCTCTTACGAAGGTCTTAACAAGAGAAAAGGTCTGGAGCACATCGAGGGGGATAGGATTGAAGCCTACAAATCCTTCAGTCATATATGAGGAAACTCAACCTGNGGAATAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTATGAAAAATACACTA-TTTTTTCCCTCCCTATGATGTGAGTGCATTTGTTCCTATAGTTTGTGAAGGTTGAGTTGATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E719834" ref_strand="+" ref_description="SGN-E719834 [FC09AA10]">
      <seq>ggcccttatactaattattaatctaactaaagatggtgagggctaaagtaaagaaagagaaaaaagtgaaaggggatcgttataagggtgttcgtatgagaaaatgggggaaatgggtagctgaagtacggcaaccgaaaagccgtgacagaatatggttaggttcttacgatactgcggaggaagcggctagagcttatgatgcagcggtggtttgtttacgtggaccgtccgcgatgattaatttcccggacgatccaccgctgatttcatgtgatgctgataattataagttgtcaccttccgaaattcaagtgaaggcatccagacatgcacgtagtagtagtactagagtaagtgaagagttggctgcagctgctgctaccgtggttgtagaccaccaccacagcagatcagcagctgtggagagtgtgttttttagagatgatttggagtttggatgttcttctttagatcatggggaagtagtgttgcatgatgatttgtttgatagtgctagaatgtggtccttttgatggatgaatcaattcaaacacctaatgttgcttattgatacgtggttgtatttggactagattaaaatgtattcaagtttagcttgtatccnanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="-" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="36425" stop="35200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36126" g_stop="35492" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="649" polyA_stop="699"/>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="-" ref_id="SGN-E719834" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36126" e_stop="35492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCCTTATACTAATTATTAATCTAACTAAAGATGGTGAGGGCTAAAGTAAAGAAAGAGAAAAAAGTGAAAGGGGATCGTTATAAGGGTGTTCGTATGAGAAAATGGGGGAAATGGGTAGCTGAAGTACGGCAACCGAAAAGCCGTGACAGAATATGGTTAGGTTCTTACGATACTGCGGAGGAAGCGGCTAGAGCTTATGATGCAGCGGTGGTTTGTTTACGTGGACCGTCCGCGATGATTAATTTCCCGGACGATCCACCGCTGATTTCATGTGATGCTGATAATTATAAGTTGTCACCTTCCGAAATTCAAGTGAAGGCATCCAGACATGCACGTAGTAGTAGTACTAGAGTAAGTGAAGAGTTGGCTGCAGCTGCTGCTACCGTGGTTGTAGACCACCACCACAGCAGATCAGCAGCTGTGGAGAGTGTGTTTTTTAGAGATGATTTGGAGTTTGGATGTTCTTCTTTAGATCATGGGGAAGTAGTGTTGCATGATGATTTGTTTGATAGTGCTAGAATGTGGTCCTTTTGATGGATGAATCAATTCAAACACCTAATGTTGCTTATTGATACGTGGTTGTATTTGGACTAGATTAAAATGTATTCAAGTTTAGCTTGTATCCACTTAAAA</genome_strand>
        <mrna_strand>GGCCCTTATACTAATTATTAATCTAACTAAAGATGGTGAGGGCTAAAGTAAAGAAAGAGAAAAAAGTGAAAGGGGATCGTTATAAGGGTGTTCGTATGAGAAAATGGGGGAAATGGGTAGCTGAAGTACGGCAACCGAAAAGCCGTGACAGAATATGGTTAGGTTCTTACGATACTGCGGAGGAAGCGGCTAGAGCTTATGATGCAGCGGTGGTTTGTTTACGTGGACCGTCCGCGATGATTAATTTCCCGGACGATCCACCGCTGATTTCATGTGATGCTGATAATTATAAGTTGTCACCTTCCGAAATTCAAGTGAAGGCATCCAGACATGCACGTAGTAGTAGTACTAGAGTAAGTGAAGAGTTGGCTGCAGCTGCTGCTACCGTGGTTGTAGACCACCACCACAGCAGATCAGCAGCTGTGGAGAGTGTGTTTTTTAGAGATGATTTGGAGTTTGGATGTTCTTCTTTAGATCATGGGGAAGTAGTGTTGCATGATGATTTGTTTGATAGTGCTAGAATGTGGTCCTTTTGATGGATGAATCAATTCAAACACCTAATGTTGCTTATTGATACGTGGTTGTATTTGGACTAGATTAAAATGTATTCAAGTTTAGCTTGTATCCNANAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E717114" ref_strand="+" ref_description="SGN-E717114 [FB18DH04]">
      <seq>tattaatctaactaaagatggtgagggctaaagtaaagaaagagaaaaaagtgaaaggggatcgttataagggtgttcgtatgagaaaatgggggaaatgggtagctgaagtacggcaaccgaaaagccgtgacagaatatggttaggttcttacgatactgcggaggaagcggctagagcttatgatgcagcggtggtttgtttacgtggaccgtccgcgatgattaatttcccggacgatccaccgctgatttcatgtgatgctgataattataagttgtcaccttccgaaattcaagtgaaggcatccagacatgcacgtagtagtagtactagagtaagtgaagagttggctgcagctgctgctaccgtggttgtagaccaccaccacagcagatcagcagctgtggagagtgtgttttttagagatgatttggagtttggatgttcttctttagatcatggggaagtagtgttgcatgatgatttgtttgatagtgctagaatgtggtccttttgatggatgaatcaattcaaacacctaatgttgcttattgaaaaaaaaaaaaaaaaaaaaaaaaaaaaacccccgggggggggccgggaccccattccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="-" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="36411" stop="35251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36111" g_stop="35554" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="569" polyA_stop="588"/>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="-" ref_id="SGN-E717114" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36111" e_stop="35554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAATCTAACTAAAGATGGTGAGGGCTAAAGTAAAGAAAGAGAAAAAAGTGAAAGGGGATCGTTATAAGGGTGTTCGTATGAGAAAATGGGGGAAATGGGTAGCTGAAGTACGGCAACCGAAAAGCCGTGACAGAATATGGTTAGGTTCTTACGATACTGCGGAGGAAGCGGCTAGAGCTTATGATGCAGCGGTGGTTTGTTTACGTGGACCGTCCGCGATGATTAATTTCCCGGACGATCCACCGCTGATTTCATGTGATGCTGATAATTATAAGTTGTCACCTTCCGAAATTCAAGTGAAGGCATCCAGACATGCACGTAGTAGTAGTACTAGAGTAAGTGAAGAGTTGGCTGCAGCTGCTGCTACCGTGGTTGTAGACCACCACCACAGCAGATCAGCAGCTGTGGAGAGTGTGTTTTTTAGAGATGATTTGGAGTTTGGATGTTCTTCTTTAGATCATGGGGAAGTAGTGTTGCATGATGATTTGTTTGATAGTGCTAGAATGTGGTCCTTTTGATGGATGAATCAATTCAAACACCTAATGTTGCTTATTG</genome_strand>
        <mrna_strand>TATTAATCTAACTAAAGATGGTGAGGGCTAAAGTAAAGAAAGAGAAAAAAGTGAAAGGGGATCGTTATAAGGGTGTTCGTATGAGAAAATGGGGGAAATGGGTAGCTGAAGTACGGCAACCGAAAAGCCGTGACAGAATATGGTTAGGTTCTTACGATACTGCGGAGGAAGCGGCTAGAGCTTATGATGCAGCGGTGGTTTGTTTACGTGGACCGTCCGCGATGATTAATTTCCCGGACGATCCACCGCTGATTTCATGTGATGCTGATAATTATAAGTTGTCACCTTCCGAAATTCAAGTGAAGGCATCCAGACATGCACGTAGTAGTAGTACTAGAGTAAGTGAAGAGTTGGCTGCAGCTGCTGCTACCGTGGTTGTAGACCACCACCACAGCAGATCAGCAGCTGTGGAGAGTGTGTTTTTTAGAGATGATTTGGAGTTTGGATGTTCTTCTTTAGATCATGGGGAAGTAGTGTTGCATGATGATTTGTTTGATAGTGCTAGAATGTGGTCCTTTTGATGGATGAATCAATTCAAACACCTAATGTTGCTTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="47585" stop="48738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47885" g_stop="48438" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47885" e_stop="48438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTGGCCCATCTAGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAAATGAGCAAGTGCAGAATGATGAATTACCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGTGGGTTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACTTCAGGTTCCGGAGGTACAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCACGGTTGACTACAGGGCGTATAATGACAAGTGATCAGCATAAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGATTTGGCGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E245958" ref_strand="+" ref_description="SGN-E245958 [cLEF-51-E16]">
      <seq>caggctccggaggtacaatatgcggctactatggctccccgcatggatgttccattggaaataggcacgtttccaagtctgactactgggcctataatgacaaatgatcagcatatattttcagtaagttcttgaaattgaaacctccagtcttcaaaggtgcggaatcggaggatgcttacgattttctggtggactgtcatgagctactacacaagaagggtatagtagaacggtttggtgttgagttcgtgagttatcagtttcaagggaacgccaaaatgtggtggcggtcacatattgagtgtcaaccaacagaagcaccacctatgacttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="47790" stop="48728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48090" g_stop="48428" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E245958" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48090" e_stop="48428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGTTCCGGAGGTACAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCACGGTTGACTACAGGGCGTATAATGACAAGTGATCAGCATAAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGATTTGGCGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGG</genome_strand>
        <mrna_strand>CAGGCTCCGGAGGTACAATATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCAAGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATATA-TTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAAGGTGCGGAATCGGAGGATGCTTACGATTTTCTGGTGGACTGTCATGAGCTACTACACAAGAAGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAAGCACCACCTATGACTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="-" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="50239" stop="48877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49938" g_stop="49177" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="-" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49938" e_stop="49177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAGCTTCCATCCTTCTTCTTCACAAACAAAACAGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCCCTTAACTCAGCGGGAGCCATTCTATAAGGGGGTATATAAATGGGGCGAGTACCCGGTTCAAGATCGATGCAGAAGTCAATATCTCTATCTGGTGGCATACCAGGAAGGTCTGCAGGAAACACATCTAAAAACTCGCGGACTATCGAAACCGACTCAATCGAAGGTACTTGGGTAGTATCATCCCTGAGGTGTGCCAAGAAAGCTAAACAACCCTTACTAACCATTCTCTTAGCACGAAGAAAGGAGACGATACGAACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGCCTAACGTCATAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACAAGACAAGACCTATACACCTTTTCAACTATCAAAGACTCACCCACTGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="-" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="49835" stop="48905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49535" g_stop="49205" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49535" e_stop="49205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGCCTAACGTCATAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACAAGACAAGACCTATACACCTTTTCAACTATCAAAGACTCACCCACTGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E352117" ref_strand="+" ref_description="SGN-E352117 [cTOS-13-N24]">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="48935" stop="50195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49235" g_stop="49895" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E352117" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49235" e_stop="49895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCAGTGGGTGAGTCTTTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACTTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGACTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTATGACGTTAGGCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTTCGTATCGTCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAGGGTTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCGATTGAGTCGGTTTCGATAGTCCGCGAGTTTTTAGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCAGATAGAGATATTGACTTCTGCATCGATCTTGAACCGGGTACTCGCCCCATTTATATACCCCCTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCCCCTTGGG</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGT-GGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="-" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="50239" stop="48978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49938" g_stop="49278" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="-" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49938" e_stop="49278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAGCTTCCATCCTTCTTCTTCACAAACAAAACAGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCCCTTAACTCAGCGGGAGCCATTCTATAAGGGGGTATATAAATGGGGCGAGTACCCGGTTCAAGATCGATGCAGAAGTCAATATCTCTATCTGGTGGCATACCAGGAAGGTCTGCAGGAAACACATCTAAAAACTCGCGGACTATCGAAACCGACTCAATCGAAGGTACTTGGGTAGTATCATCCCTGAGGTGTGCCAAGAAAGCTAAACAACCCTTACTAACCATTCTCTTAGCACGAAGAAAGGAGACGATACGAACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGCCTAACGTCATAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACAAGACAAGACCTATACACCTTTTCAACTATCAAAGACTCACCCACTGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="-" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="50307" stop="49050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50007" g_stop="49349" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="-" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50007" e_stop="49349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAACCGTTACCTTATTCAGTTGTCTGTAGTCTATGCACATCCGAAAGCTTCCATCCTTCTTCTTCACAAACAAAACAGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCCCTTAACTCAGCGGGAGCCATTCTATAAGGGGGTATATAAATGGGGCGAGTACCCGGTTCAAGATCGATGCAGAAGTCAATATCTCTATCTGGTGGCATACCAGGAAGGTCTGCAGGAAACACATCTAAAAACTCGCGGACTATCGAAACCGACTCAATCGAAGGTACTTGGGTAGTATCATCCCTGAGGTGTGCCAAGAAAGCTAAACAACCCTTACTAACCATTCTCTTAGCACGAAGAAAGGAGACGATACGAACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGCCTAACGTCATAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTC-ACAAGACAAGACCTATACACCTTTTCAACTATCAA</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAAC-AGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E353207" ref_strand="+" ref_description="SGN-E353207 [cTOS-14-B13]">
      <seq>tcggcatgtactgttttccaaaacttagaagtaaattgcgtacctctatctgatatgatggagagtggaactccgtgcaatcgaacaatttctaagatgtaaagtttggctaacttctctgcattgtaagtcaccttaaccgaaatagagtgagcagacttagttaatctgtcaacaatcacccaaatagagtcatacctacccatcgtctttggatgactaaccacgaagtccattgcaattctctcccacttccattcaggaatgggcattctctgaagtgtccctccaggcctctggtgttcatactttacttgctgacaattcgggcattgagcaacaaaattaacaatgtcacgcttcatcctactccaccaaaaatgttgctttaggtcacgatacatcttgtttgcaccaggatgtatagagtacttcgaactatgagcctatataagaatagtgtgaatcaaatcatcgacgcggggtacacatactccttcccttattctcaaaacaccttcctcatcgatttttgcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="-" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="52078" stop="50937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51778" g_stop="51237" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="-" ref_id="SGN-E353207" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51778" e_stop="51237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCCGATATGATGGAGAGTGGAACCCCATGCAATCGAACAATTTCTGAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGGAATGAAGTGGGCAGACTTAGTTAACCTATCAAAGATTACCCAAATGGAGTCATACTTACCCATTGTCCTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCCGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTCTGGTGTTCATATTTTACTTGCTGACAATATGAACATTTGGCAATAAAATCAACAATGTCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCGCGGTACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGAGCCTCTGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATAC-CCTTCCCTTAATTCTCAAAACACCTTCCTCGTCGATTTTTGCTTCTTT</genome_strand>
        <mrna_strand>TCGGCATGTACTGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCGTGCAATCGAACAATTTCTAAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGAAATAGAGTGAGCAGACTTAGTTAATCTGTCAACAATCACCCAAATAGAGTCATACCTACCCATCGTCTTTGGATGACTAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATTAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGTTTGCACCAGGATGTATAGAGTACTTCGAACTATGAGCCTATATAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACTCCTTCCCTT-ATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E243194" ref_strand="-" ref_description="SGN-E243194 [cLEE-2-G17]">
      <seq>ttcagagagattctttgtgttgagacataaattttgcaaaggagattatggagaggagaagcaagttgttgaagattaagtgaagaaggtggacaagtttatttgtcagaaattcaggccaagggggagacttgttgggttttatttgccctaaatttcttaccataaataggttttccttgtaggaaaaggttttggattgactaatccttttcttgtaggaaaaggttttggattgactaatccttttcttgtaggaaaaggtttaggactccataaatagaggcatttttcttctaacttaatcagcattcaaaatgtagtcttaagtgctttgagagttttggttagagggagaatttgtgggtcacaagcttgatacgttatcacttgtgtgaacctcccatgtattctgagtgaattggttgaggttgtttccctctgtattttgtactctcatatttatagtggattgctcatctcctttgtggacgtaggtcgattgaccgaaccacgttaaatctttatgtctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="-" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="95374" stop="93532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95074" g_stop="94847" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94846" i_stop="94140" i_length="707">
            <donor d_prob="0.153" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94139" g_stop="93832" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="535" r_length="308" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="-" ref_id="SGN-E243194" ref_strand="-">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243194" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="95074" e_stop="94847"/>
          <exon e_start="94139" e_stop="93832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGAGAGGTTCTTTGTGTTGAGACATAAATTTTGCAAAGGAGATTATGGAGAGGAGAAGCAAGTTGTTAAAGATTAAGTGAAGAAGGTGGACAAATTTATTTTGTCAGAAATTCAGGCCAAGGGGGAGATTTGTTGGGTTTTATTTGCCCTAAATTTCTTACCATAAATAGATTTTCCTTTTAGAAAAAGGTTTTGGATTGAATAATCTTTTTCTTGTAGGAAAAGGTTTAAGACTCTATAAATAGAGGAATGTTTCTTCTAACTTAATTTAGCATTCACAATGTAGTCTTAAGAGCTTTGAGAGTTTTGGTTAGGGGAAGAATTTATGGGTCACAAGCTTGATACGTTATCGCTTGTGTGAACCTCCCATGTATTCCGAGTGAATTGGTTGAGATTGTTTCCCTTTGTATTTTGTACTCTCATATTTATAGTGGATTGCTCATCTCCTTTGTGGACGTAGTTTGATTGATCGAACCACGTTAAATCTCTGTGTCTTTTGGTATATTTCACGTTGTCTTCTTACTCGTGGTCCTTTGAGGTTTGTTTTGGTAGCTTCCGCATTTACACCTGCTTATTTCCGGTCCTAACAAGTGGTATCAGAGCCAGATTCAATGACGGAGTCAGGTTCGGTAGTTCGATAATCGATGATTGAACTAGGTTAGAAAGATGTGTTCATCTTGACAGTGTAGTTCTAGCAGTAACCTTTTTGACAGCAATGAAGATTTTGTTGGAGAAATTGTTTCAGAGAGATTCTTTGTGTTGAGACATAAATTTTGCAAAGGAGATTATGGAGAGGAGAAGCAAGTTGTTGAAGATTAAGTCAAGAAGGTGGACAAATTTATTTTGTCAGAAATTCAGGCCAAGGGGGAGATTTGTTGGGTTTTATTTGCCCTAAATTTCTTACCATAAATAGATTTTCCTTTTAGAAAAAGGTTTTGGATTGAATAATCTTTTTCTTGTAGGAAAAGGTTTAGGACTCTATAAATAGAGGAATGTTTCTTCTAACTTAATTAGCATTCACAATGTAGTCTTAAGAGCTTTGAGAGTTTTGGTTAGGGGGAGAATTTATGGGTCACAAGCTTGATACGTTATCACTTGTGTGAACCTCCCATGTATTCCGAGTGAATTGGTTGAGGTTGTTTCCCTCTGTATTTTGTACTCTCATATTTATAGTGGATTGCTCATCTCCTTTGTGGACGTAGTTTGATTGACCGAACCACGTTAAATCTCTGTGTCTTTT</genome_strand>
        <mrna_strand>TTCAGAGAGATTCTTTGTGTTGAGACATAAATTTTGCAAAGGAGATTATGGAGAGGAGAAGCAAGTTGTTGAAGATTAAGTGAAGAAGGTGGACAAGTTTA-TTTGTCAGAAATTCAGGCCAAGGGGGAGACTTGTTGGGTTTTATTTGCCCTAAATTTCTTACCATAAATAGGTTTTCCTTGTAGGAAAAGGTTTTGGATTGACTAATCCTTTTCTTGTAGGAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGATTGACTAATCCTTTTCTTGTAGGAAAAGGTTTAGGACTCCATAAATAGAGGCATTTTTCTTCTAACTTAATCAGCATTCAAAATGTAGTCTTAAGTGCTTTGAGAGTTTTGGTTAGAGGGAGAATTTGTGGGTCACAAGCTTGATACGTTATCACTTGTGTGAACCTCCCATGTATTCTGAGTGAATTGGTTGAGGTTGTTTCCCTCTGTATTTTGTACTCTCATATTTATAGTGGATTGCTCATCTCCTTTGTGGACGTAGGTCGATTGACCGAACCACGTTAAATCTTTATGTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E338242" ref_strand="+" ref_description="SGN-E338242 [cTOE-13-M11]">
      <seq>taatattttctttcttttagaattttagtaagttcttttataacacgttatcagcacgagtctctagctaattgagagtgagttttagttttttctttaactcatgttttggttgatctcgatatgagaatcaaggtattatttgcataagatcaggtatgtattttctaaaatattttatgatttagaataaaatagtattcagtcactagcaattatcaggaaccgaagacatatactactattggttgaatatgacatgctatataaaacttattaaatggaagaaggtataaaattttaatagcatgagtttgaatgttattttgattgttttgaaagactcaaagggtgagtcgtgttgtacttcggtctattataccgttggtcaagggtaagacgattgattcaagtttcatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="99702" stop="100687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100002" g_stop="100387" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="421" r_length="386" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E338242" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100002" e_stop="100387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATAACACGTTATCAGCACGAGTCTCTGTCTAATTGAGAGTGAGTTCTTGTTT-TTCTTAAGTTCATATTTTGGTTGATCTCGTTATGAAGATCAAAGTATTATATGCATAAAATCAGTTATGTATTTTCTAGAATATTTTTATGATTTAGAATAAAATAGTATTCAGTCACTAACAATTATCAGGAACCGAAGACATATACTACTATTGGTTGAATATGACATGCTATACAAAATTTCTTAAATAGAAAAAGGTATAAAATTTTAATAGCATGAATTTGAATGTTATTTTGATTGTTTTGAAAGACTCAAAGGATGAGTCATGTTGTACTTCGATTTATTATACCGTTGGTTAAGGGTAAGACGATGGATTCAAGTTTCATCG</genome_strand>
        <mrna_strand>TTTTATAACACGTTATCAGCACGAGTCTCTAGCTAATTGAGAGTGAGTTTTAGTTTTTTCTTTAACTCATGTTTTGGTTGATCTCGATATGAGAATCAAGGTATTATTTGCATAAGATCAGGTATGTATTTTCTAAAATA-TTTTATGATTTAGAATAAAATAGTATTCAGTCACTAGCAATTATCAGGAACCGAAGACATATACTACTATTGGTTGAATATGACATGCTATATAAAACTTATTAAATGGAAGAAGGTATAAAATTTTAATAGCATGAGTTTGAATGTTATTTTGATTGTTTTGAAAGACTCAAAGGGTGAGTCGTGTTGTACTTCGGTCTATTATACCGTTGGTCAAGGGTAAGACGATTGATTCAAGTTTCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E354965" ref_strand="+" ref_description="SGN-E354965 [cTOS-19-M24]">
      <seq>gataagacgatagattcaagttctatctcaccaaaagggtaagacatcaattagagttttgatacaccgtgattgggttcaagttccatagaattatggcgtaacacgccttacatgggtaagacattgagtttgatccaatgcataaaatgatgactaagaaaaataatatatttttgatgaaatgtctttaaattcatcatattgaatttgctccatttcttgaaaagaatatggtagcaacatgtgataactctgaaatccacctgttgacttgctccattcaatcatatgaatgtggtagcagtgaatgattagtttgaaagatgacaaataattaatgatatagaataagggagtggagggaaagaattataatagtcatcattgtggtaatgataaaaggaagaacactatgagttcttcaaatagtccttcaaaatgtgaaggcaacttttattatcaaaatggtatgaaaggttattagacttgtcaatgttgtcaaccccataatttgacaagtttataaatcctctatcatgacacaagaagataaagtgatggtacacttcatctttcaaagtgatgttgaggtgtgtcatggaaatatgatgaattttaaagccatgacaatgtgcttataatgcaaatttatgaagtacatataaataattagttcattccttgaagagaatgtgacttgtgatgagtatcgtgaatgctcgaccattctataaaagaatgggtccaaatgtgataaaatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="100147" stop="101507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100447" g_stop="101207" g_length="761"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="767" r_length="767" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E354965" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100447" e_stop="101207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAGACGATAGATTCAAGTTCTATCGCACCAAAAGGGTAAGACATCAATTTGAGTTTTGATGCACCGTGATTGGGTTCAAGTCCCATAGAATTATGGCGTAAAACGCCTTATATGGATAAGACATTGAGTTTGAGTCAATGCACCATAATGATGA-T-ATAATGATGACTAGGCTTTGATGAAAAGTCTTGAAATTCGTTCTATTGAATTTGCTTCATTCCTTGAAAAGAATGTGGTAGCAACATGTAATAACTCTGAAATCCGCCTGTTAACTTGCTCCATTCAATCATACGAATGTGGTAGCAGTGAATG-TTAGTCTGAAAGATGACAAATGATTAATGATAT-GAATAAGGGCGTGGAGGGACATAATTATAATAGTCATCATTGTGGTAATGATAAAAGGAAGAACACTATGAGTTCTTCAAATAGTCCTTCAAAATGTGAAGGCAATTTTTATTAACAAAATGGTATGAAAGGTCATTAGACTTGTGAATGTTGTCAACCCAATAATTTGACAAATTTATAAATCCTCTATCATGATAC---AAGATAAAGTGATGGTACACTTAATCTTTCAAAGTGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGTCATGACAATGTGCTTATAATGCAAATTTATGAAGTACATATAAATAATTAGTCCAATCCTTGAAGAGAATGTGACTTGTAATGAGTATCGTGAATGCTCGACCATTCTATAAGAGAATGGGTCCAGATGTGATAAAATCATT</genome_strand>
        <mrna_strand>GATAAGACGATAGATTCAAGTTCTATCTCACCAAAAGGGTAAGACATCAATTAGAGTTTTGATACACCGTGATTGGGTTCAAGTTCCATAGAATTATGGCGTAACACGCCTTACATGGGTAAGACATTGAGTTTGATCCAATGCA-TAAAATGATGACTAAGAAAAATAATATATTTTTGATGAAATGTCTTTAAATTCATCATATTGAATTTGCTCCATTTCTTGAAAAGAATATGGTAGCAACATGTGATAACTCTGAAATCCACCTGTTGACTTGCTCCATTCAATCATATGAATGTGGTAGCAGTGAATGATTAGTTTGAAAGATGACAAATAATTAATGATATAGAATAAGGGAGTGGAGGGAAAGAATTATAATAGTCATCATTGTGGTAATGATAAAAGGAAGAACACTATGAGTTCTTCAAATAGTCCTTCAAAATGTGAAGGCAACTTTTATTATCAAAATGGTATGAAAGGTTATTAGACTTGTCAATGTTGTCAACCCCATAATTTGACAAGTTTATAAATCCTCTATCATGACACAAGAAGATAAAGTGATGGTACACTTCATCTTTCAAAGTGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGCCATGACAATGTGCTTATAATGCAAATTTATGAAGTACATATAAATAATTAGTTCATTCCTTGAAGAGAATGTGACTTGTGATGAGTATCGTGAATGCTCGACCATTCTATAAAAGAATGGGTCCAAATGTGATAAAATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E273497" ref_strand="+" ref_description="SGN-E273497 [cLEN-3-J16]">
      <seq>ttcagacacctggattgtttcaaggattttcatataaccttcattacaatttttcattacatgcattcaagtttttcatatgttgccagatcaaaacaaacctcattgcatccaccaaaggagaaaacatctccaataatgtcaggatttttgcgataaacctttatgccccaaggcacaaaccgtatttgatatcttacggttatactatcacataataatttatttgtaccccactgacattataccttgatttatggactaccagtccaaaatgtcacttttctaagtgaaacaaaatatacttgaattgtgcattttacttggctaaccatttatctgttcacactatatgacagatttgaattcaagatcctcatcacaatttatatcattgagcgctacctcatatcaaagataccgtcgacggttatttgatatcgattccaacaagacataacttatcgagatctcttcaatttttttcattatttcaggtacctgaacctttttcaagattttatgaagtgttatgtcaatgtgctcctttatagcacttgcctcattatcatgaccatattgatcatttgctccttccttctttaaggaattttatatttggaatcaattggtctattacgctttcggcgtatcataaactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="-" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="103613" stop="102338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103313" g_stop="102638" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="-" ref_id="SGN-E273497" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103313" e_stop="102638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACACCTCGATTGTTTCAAGGATTTTCATATAACCTTCATTGTCTAGCTAGACATTACAATTATTCATTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCGCATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGAACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTATGTATTTTACTTGGCCAACCATTTATCTGTCCACACTATATGACAGATTTGAATTCAAGATCCTCGTCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATACCGTCGACTGTTATTTGATATCGATTCCAACAAGACATAACTTATCGAGATCTCTTC-A--TTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAGATTGTATGAAGTGTTATGTCAATGTGCTCCTTTATAGAACTTGCCTCATTATCATGACCATATTGATCATTTGCTCCTTCCTTCTTCAAGGAATTTTATATTTGGAATCGATTGGTTTATTACGCTTCCGGCGTATCATAGACTCTG</genome_strand>
        <mrna_strand>TTCAGACACCTGGATTGTTTCAAGGATTTTCATATAACCTTCA---T-TA-C---A-A-T----TT-TTCATTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCACATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCTAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATACCGTCGACGGTTATTTGATATCGATTCCAACAAGACATAACTTATCGAGATCTCTTCAATTTTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAGATTTTATGAAGTGTTATGTCAATGTGCTCCTTTATAGCACTTGCCTCATTATCATGACCATATTGATCATTTGCTCCTTCCTTCTTTAAGGAATTTTATATTTGGAATCAATTGGTCTATTACGCTTTCGGCGTATCATAAACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E273387" ref_strand="+" ref_description="SGN-E273387 [cLEN-3-J20]">
      <seq>ttcagacacctggattgtttcaaggattttcatataaccttcattacaatttttcattacatgcattcaagtttttcatatgttgccagatcaaaacaaacctcattgcatccaccaaaggagaaaacatctccaataatgtcaggatttttgcgataaacctttatgccccaaggcacaaaccgtatttgatatcttacggttatactatcacataataatttatttgtaccccactgacattataccttgatttatggactaccagtccaaaatgtcacttttctaagtgaaacaaaatatacttgaattgtgcattttacttggctaaccatttatctgttcacactatatgacagatttgaattcaagatcctcatcacaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="-" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="103613" stop="102611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103313" g_stop="102911" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="-" ref_id="SGN-E273387" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.039" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103313" e_stop="102911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACACCTCGATTGTTTCAAGGATTTTCATATAACCTTCATTGTCTAGCTAGACATTACAATTATTCATTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCGCATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGAACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTATGTATTTTACTTGGCCAACCATTTATCTGTCCACACTATATGACAGATTTGAATTCAAGATCCTCGTCACAATTT</genome_strand>
        <mrna_strand>TTCAGACACCTGGATTGTTTCAAGGATTTTCATATAACCTTCA---T-TA-C---A-A-T----TT-TTCATTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCACATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCTAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E391540" ref_strand="+" ref_description="SGN-E391540 [TUS-16-I1]">
      <seq>acgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtggatatatcgcattcattgagtaccccaatgattatgagatcacttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="102619" stop="103897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102919" g_stop="103597" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E391540" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102919" e_stop="103597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATAAATGGTTGGCCAAGTAAAATACATAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTTCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAACTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAATATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGGC</genome_strand>
        <mrna_strand>ACGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG-AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATG-AAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E205808" ref_strand="+" ref_description="SGN-E205808 [cLEC-20-M21]">
      <seq>cgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="102620" stop="103775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102920" g_stop="103475" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E205808" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102920" e_stop="103475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATAAATGGTTGGCCAAGTAAAATACATAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTTCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAACTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAG</genome_strand>
        <mrna_strand>CGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG-AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATG-AAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E202657" ref_strand="+" ref_description="SGN-E202657 [cLEC-19-H1]">
      <seq>gatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttaaaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacgggttgcttcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgatttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="102624" stop="103677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102924" g_stop="103377" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E202657" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102924" e_stop="103377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATAAATGGTTGGCCAAGTAAAATACATAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTTCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAACTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAAT</genome_strand>
        <mrna_strand>GATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAAAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGGTTGCTTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGATTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E267707" ref_strand="+" ref_description="SGN-E267707 [cLEI-12-K2]">
      <seq>ttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="102668" stop="103851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102968" g_stop="103551" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E267707" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102968" e_stop="103551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCAAGTAAAATACATAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTTCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAACTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAATATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGA</genome_strand>
        <mrna_strand>TTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG-AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATG-AAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E289962" ref_strand="+" ref_description="SGN-E289962 [cLET-9-B10]">
      <seq>ttgaaagaaacttatccaataaagcttcaagaattcttatatggattgaaatagtcaaggaagaaaaatggtacaaaagaatgaccctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgccttgacctacagattgataatttgacaaatgaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatatgaataaatcgcattcattgagtaccccaatgattatgagattacttgacataaatgatgattcagtttgatctcaaaagaaggatgatgagtttcttggtgatgaaactctatcttggtgcaatcagggcactagtgcatcttactaacaatattattccagatatttgttttgcagtaaatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="103026" stop="104035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103326" g_stop="103735" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E289962" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103326" e_stop="103735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAATATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGGCATAAATGATGATTCAATTTGATCTCAAAAGAAGGATGAAGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTTGACCAGATATTTGTTTTGCAGTAAATTTACT</genome_strand>
        <mrna_strand>TTGAAAGAAACTTATCCAATAAAGCTTCAAGAATTCTTATATGGATTGAAATAGTCAAGGAAGAAAAATGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATG-AAAAGGTCTTGGTAAGACAAAATTTTGCCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATATGAATAAATCGCATTCATTGAGTACCCCAATGATTATGAGATTACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGATGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTATTCCAGATATTTGTTTTGCAGTAAATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E208613" ref_strand="+" ref_description="SGN-E208613 [cLEC-39-E19]">
      <seq>aagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtggatatatcgcattcattgagtaccccaatgattatgagatcacttgtcataaatgatgattcagtttgatctcaaaagaaggatgatgagtttcttggtgatgaaactctatcttggtgcaatcagggcactagtgcatcttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggcgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="103102" stop="104135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103402" g_stop="103883" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E208613" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103402" e_stop="103883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAATATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGGCATAAATGATGATTCAATTTGATCTCAAAAGAAGGATGAAGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTTGACCAGATATTTGTTTTGCAGTAAATTTACTGGCAAGATTCAGTTTCTCCCCGATAAAAGGACATTGAAATGGTGTTGAGCACATGATTGAATATCCTCGAAGGACCATAGTTATGGGTTTATTCTATCCCGGGGAATCCAAGACAAAATTGATTGATTACGCAGATGCAGAATATTTA</genome_strand>
        <mrna_strand>AAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAA-GGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGTCATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGATGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGCGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E319779" ref_strand="+" ref_description="SGN-E319779 [cTOB-12-B23]">
      <seq>tcctcttgaaccttctagggttttgttatcctcttcttacctactctcctccatatttccaacaatttactccagttgagaagaagaaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104549" stop="106532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104849" g_stop="104955" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="289" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="469" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106232" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="572" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E319779" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104849" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTTGAACCTTCTAGGGTTTTGTTATCCTCTTCTTACCTACTCTCCTCCATATTTCCAACAATTTACTCCAGTTGAGAAGAAG-AAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTG</genome_strand>
        <mrna_strand>TCCTCTTGAACCTTCTAGGGTTTTGTTATCCTCTTCTTACCTACTCTCCTCCATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E318759" ref_strand="+" ref_description="SGN-E318759 [cTOB-11-G15]">
      <seq>tcctcttgaaccttctagggttttgttatcctcttcttacctactctcctccatatttccaacaatttactccagttgagaagaagaaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaaactgaagtggagtttggaggatcaaagcacctcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104549" stop="106503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104849" g_stop="104955" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="289" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="469" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106203" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="544" r_length="75" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E318759" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104849" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTTGAACCTTCTAGGGTTTTGTTATCCTCTTCTTACCTACTCTCCTCCATATTTCCAACAATTTACTCCAGTTGAGAAGAAG-AAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGG-AACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCT</genome_strand>
        <mrna_strand>TCCTCTTGAACCTTCTAGGGTTTTGTTATCCTCTTCTTACCTACTCTCCTCCATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAAACTGAAGTGGAGTTTGGAGGATCAAAGCACCTCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E312040" ref_strand="+" ref_description="SGN-E312040 [cTOA-11-E5]">
      <seq>tcctcttgaaccttctagggttttgttatcctcttcttacctactctcctccatatttccaacaatttactccagttgagaagaagaaaaaacttatccaaattcagaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104549" stop="106461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104849" g_stop="104955" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="287" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="467" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106161" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="499" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E312040" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104849" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTTGAACCTTCTAGGGTTTTGTTATCCTCTTCTTACCTACTCTCCTCCATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGC</genome_strand>
        <mrna_strand>TCCTCTTGAACCTTCTAGGGTTTTGTTATCCTCTTCTTACCTACTCTCCTCCATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAG..................................................................................................A-AAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E200132" ref_strand="+" ref_description="SGN-E200132 [cLEB-7-D22]">
      <seq>gcacgaggaaccttctagggttttgttatcctcttcttacctactctcctccatatttccaacaatttactccagttgagaagaagaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcacgtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaacactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattaatgtgaagactggtgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104556" stop="106347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104849" g_stop="104955" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="288" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="468" r_length="180" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106138" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="477" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E200132" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104849" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTTGAACCTTCTAGGGTTTTGTTATCCTCTTCTTACCTACTCTCCTCCATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCC</genome_strand>
        <mrna_strand>GCACGAGGAACCTTCTAGGGTTTTGTTATCCTCTTCTTACCTACTCTCCTCCATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCACGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAACACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAATGTGAAG..................................................................................ACTGGTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E727776" ref_strand="+" ref_description="SGN-E727776 [LA15CH01]">
      <seq>ctcttgaaccttctagggttttgttatcctcttcttacctactctcctccatatttccaacaatttactccagttgagaagaagaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcagggtgtctgatgtaatggctgtgctatcttagtgggactattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104551" stop="107324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104851" g_stop="104955" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="286" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="466" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="622" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="700" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="107024" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="885" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E727776" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104851" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTGAACCTTCTAGGGTTTTGTTATCCTCTTCTTACCTACTCTCCTCCATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTG</genome_strand>
        <mrna_strand>CTCTTGAACCTTCTAGGGTTTTGTTATCCTCTTCTTACCTACTCTCCTCCATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E212134" ref_strand="+" ref_description="SGN-E212134 [cLEC-75-J17]">
      <seq>ttgaaccttctagggttttgttatcctcttcttacctactctcctccatatttccaacaatttactccagttgagaagaagaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104554" stop="107053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104854" g_stop="104955" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="283" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="463" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="619" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="697" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="106848" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="706" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E212134" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104854" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="106848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAACCTTCTAGGGTTTTGTTATCCTCTTCTTACCTACTCTCCTCCATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCT</genome_strand>
        <mrna_strand>TTGAACCTTCTAGGGTTTTGTTATCCTCTTCTTACCTACTCTCCTCCATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E370281" ref_strand="+" ref_description="SGN-E370281 [TUS-28-C9]">
      <seq>ggttttgttatcctcttcttacctactctcctccatatttccaacaatttactccagttgagaagaagaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagttggatggatcaaagcacctcattctgaaagaggatgatattggtggtatttcttgagacagatgatggcgaggatctgcagccattacatgacagagtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104567" stop="106578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104867" g_stop="104955" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="270" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="450" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106278" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="600" r_length="150" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E370281" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104867" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTGTTATCCTCTTCTTACCTACTCTCCTCCATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTA-TTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCT</genome_strand>
        <mrna_strand>GGTTTTGTTATCCTCTTCTTACCTACTCTCCTCCATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTGGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGGTGGTATTTCTTGAGACAGATGATGGCGAGGATCTGCAGCCATTACATGACAGAGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E270874" ref_strand="+" ref_description="SGN-E270874 [cLEM-6-D5]">
      <seq>ggttttgttatcctcttcttacctactctcctccatatttccaacaatttactccagttgagaagaagaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcatctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104567" stop="106461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104867" g_stop="104955" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="270" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="450" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106161" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="482" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E270874" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104867" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTGTTATCCTCTTCTTACCTACTCTCCTCCATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGC</genome_strand>
        <mrna_strand>GGTTTTGTTATCCTCTTCTTACCTACTCTCCTCCATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCATCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E578248" ref_strand="+" ref_description="SGN-E578248 [LE12BC11]">
      <seq>gttttgttatcctcttcttacctactctcctccatatttccaacaatttactccagttgagaagaagaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104568" stop="107011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104868" g_stop="104955" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="269" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="449" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="605" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106711" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="650" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E578248" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104868" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGTTATCCTCTTCTTACCTACTCTCCTCCATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACT</genome_strand>
        <mrna_strand>GTTTTGTTATCCTCTTCTTACCTACTCTCCTCCATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E213603" ref_strand="+" ref_description="SGN-E213603 [cLEC-76-I11]">
      <seq>tttgttatcctcttcttacctactctcctccatatttccaacaatttactccagttgagaagaagaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggacaggannacactttcagtatccccaggaaatacagttctctattccaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104570" stop="107230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104870" g_stop="104955" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="267" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="447" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="603" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="681" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="106930" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="771" r_length="90" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E213603" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104870" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="106930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTATCCTCTTCTTACCTACTCTCCTCCATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAAT</genome_strand>
        <mrna_strand>TTTGTTATCCTCTTCTTACCTACTCTCCTCCATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGG-ACAGGANNACACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E254030" ref_strand="+" ref_description="SGN-E254030 [cLEG-34-E24]">
      <seq>gttatcctcttcttacctactctcctccatatttccaacaatttactccagttgagaagaagaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104573" stop="106570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104873" g_stop="104955" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="264" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="444" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106270" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="585" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E254030" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104873" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATCCTCTTCTTACCTACTCTCCTCCATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGAC</genome_strand>
        <mrna_strand>GTTATCCTCTTCTTACCTACTCTCCTCCATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E314377" ref_strand="+" ref_description="SGN-E314377 [cTOA-21-O1]">
      <seq>tactctcctccatatttccaacaatttactccagttgagaagaagaaaaaacttatccaaattcaggtacccttttgcttctaaattcttcttctttgcattaattttccttttccgattgagtatactaaccaattttcattgtttaatttgattgggtttagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgntggtggtatcctacttccagtatcagttcagtcgaaacctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104590" stop="106278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104890" g_stop="105234" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="105978" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="456" r_length="111" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E314377" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104890" e_stop="105234"/>
          <exon e_start="105868" e_stop="105978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCTCCTCCATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAAT</genome_strand>
        <mrna_strand>TACTCTCCTCCATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGNTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E747200" ref_strand="+" ref_description="SGN-E747200 [GI|7331142]">
      <seq>ctctcctccatatttccaacaatttactccagttgagaagaagaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcagggtgtctgatgtaatggctgtgctatcttagtgggactattgagttattccgtgccaaaaatttcagcagagatctaggaaggaggaagagctgcatccaactttcgagtgaggagtaatactctctgcaaattaatgatcaatatctcaggtgtagaatcaattttctgaactcatttctgttcttgatttgaggaattagcctttgggaattttgtatgtcaaaagattgaaaactgcagactatgagagattagcaataatatttgcataattcacataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104592" stop="107564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104892" g_stop="104955" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="245" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="425" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="581" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="659" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="107263" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="1083" r_length="424" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1084" polyA_stop="1102"/>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E747200" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1083</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104892" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCCTCCATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCACAT</genome_strand>
        <mrna_strand>CTCTCCTCCATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E727081" ref_strand="+" ref_description="SGN-E727081 [LA13CG01]">
      <seq>gtctcctccatatttccaacaatttactccagttgagaagaagaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaanggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccngcagtgaattcaaaggtgctgatggatctgattatattacactcagggtgtctgatgtaatggctgtgctatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104593" stop="107311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104892" g_stop="104955" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="245" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="425" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="581" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="659" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="107011" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="831" r_length="172" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E727081" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104892" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCCTCCATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTT</genome_strand>
        <mrna_strand>GTCTCCTCCATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAANGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCNGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E278780" ref_strand="+" ref_description="SGN-E278780 [cLER-2-O4]">
      <seq>tctcctccatatttccaacaatttactccagttgagaagaagaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104593" stop="106571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104893" g_stop="104955" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="244" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="424" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106271" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="566" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E278780" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104893" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCCATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACA</genome_strand>
        <mrna_strand>TCTCCTCCATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E313629" ref_strand="+" ref_description="SGN-E313629 [cTOA-12-G10]">
      <seq>tccatatttccaacaatttactccagttgagaagaacaagaaacttatcccacttcacaaatctaatggcgtgcactcagctaacagcatcctctatctctcgcaatggttctgcattctttgaagggctcatgaccacttgcattgaaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaagcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcatctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaagaactgaagtggagtttgatggatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104598" stop="106490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104898" g_stop="104955" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.426" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="239" r_length="181" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="419" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106190" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="480" r_length="61" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E313629" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104898" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAA</genome_strand>
        <mrna_strand>TCCATATTTCCAACAATTTACTCCAGTTGAGAAGAACAAGAAACTTATCCCACTTCAC..................................................................................................AAATCTAATGGCGTGCACTCAGCTAACAGCATCCTCTATCTCTCGCAATGGTTCTGCATTCTTTGAAGGGCTCATGACCACTTGCATTGAAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAAGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCATCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAAGAACTGAAGTGGAGTTTGATGGATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E719136" ref_strand="+" ref_description="SGN-E719136 [FC06DD11]">
      <seq>gattttccaacaatttactccagttgagaagaagaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcagggtgtctgatgtaatggctgtgctatcttagtgggactattgagttattccgtgccaaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104601" stop="107346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104900" g_stop="104955" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="236" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="416" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="572" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="650" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="107045" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="856" r_length="206" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E719136" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104900" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATT</genome_strand>
        <mrna_strand>GAT-TTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E318744" ref_strand="+" ref_description="SGN-E318744 [cTOB-9-N10]">
      <seq>catatttccaacaatttactccagttgagaagaagaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgacaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgctggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104600" stop="106313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104900" g_stop="104955" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="237" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106013" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="383" r_length="146" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E318744" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104900" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTC</genome_strand>
        <mrna_strand>CATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGACAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGCTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E549305" ref_strand="+" ref_description="SGN-E549305 [TUS-69-D3]">
      <seq>atttccatcaatctactccagttgagaagaagaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgcccctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggccaccaccgtagctcctaagtacactacacttaagcctttgggtgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtaacagcccagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaatcaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcgggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgccgaagctgaagaaaaaccgctgganggttactgttgactgaggcagccaaggagaagcttcaattggcacgattatagctgtcgggcctggtcctcttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104603" stop="107169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104903" g_stop="104955" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="234" r_length="181" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="414" r_length="180" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="570" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="646" r_length="76" r_score="0.936"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="106869" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="676" r_length="30" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E549305" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104903" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="106869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGAT</genome_strand>
        <mrna_strand>ATTTCCATCAATCTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCCCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCCACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGTGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTAACAGCCCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAATCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCGGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGAAGCTGAAG-AAAAACCGCTGGANGGTTACTGTTGACTGAGGCAGCCAAGGAGAAG-CTTCAATTGGCACG...............................................................................................ATTATAGCTGTCGGGCCTGGTCCTCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E546043" ref_strand="+" ref_description="SGN-E546043 [TUS-69-D7]">
      <seq>atttccatcaatctactccagttgagaagaagaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgcccctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggccaccaccgtagctcctaagtacactacacttaagcctttgggtgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtaacagcccagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaatcaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcgggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtatttcttgagacagatgatgtcaaggatctgcagccattaaatgacagaatcctaatcaaggttgccgaagctgaagaaaaaaaccgctggaggttactgttgactgaggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104603" stop="107017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104903" g_stop="104955" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="234" r_length="181" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="414" r_length="180" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="571" r_length="157" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.926" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106717" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="622" r_length="51" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E546043" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104903" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTA-TTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAG-AAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCA</genome_strand>
        <mrna_strand>ATTTCCATCAATCTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCCCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCCACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGTGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTAACAGCCCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAATCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCGGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAATCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGAAGCTGAAGAAAAAAACCGCTGGAGG-TTACTGTTGACTGAGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E322431" ref_strand="+" ref_description="SGN-E322431 [cTOB-26-C17]">
      <seq>ttccaacaatttactccagttgagaagaagaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaagatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104605" stop="107012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104905" g_stop="104955" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="232" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="412" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="568" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106712" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="614" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E322431" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104905" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTG</genome_strand>
        <mrna_strand>TTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAAGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E267790" ref_strand="+" ref_description="SGN-E267790 [cLEI-12-L10]">
      <seq>ttccaacaatttactccagttgagaagaagaaaaagcttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104605" stop="106517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104905" g_stop="104955" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="232" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="412" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106217" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="500" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E267790" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104905" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATA</genome_strand>
        <mrna_strand>TTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAGCTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E268061" ref_strand="+" ref_description="SGN-E268061 [cLEI-15-D22]">
      <seq>ttccaacaatttactccagttgagaagaagaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104605" stop="106460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104905" g_stop="104955" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="232" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="412" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106160" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="443" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E268061" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104905" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACG</genome_strand>
        <mrna_strand>TTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E472040" ref_strand="+" ref_description="SGN-E472040 [cSTB-27-A24]">
      <seq>caacaatctactccagttgtgaagaagaaaaaacttatccaaattcagaaatggcgaccactcagctaacagcatcgtctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaaggccgtatcttttacccctttgaagcacaacaacagcaggtcttttagtcgtctggttgtcaaggctgccaccaccgtagctcctaagtacactactcttaagcctttgggcgacagagtgttggtgaagattaagaccgcggaggagaaaactgttggtggtatcctacttccagtaacagcccagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaagatcaaagtggacattagtgtgaagactggtgcccaagtcatctactcaaagtacgcgggaactgaggtggagtttgatggatcaaagcacctcattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104608" stop="106504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104908" g_stop="104955" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105058" i_length="103">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105059" g_stop="105234" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="224" r_length="176" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="404" r_length="180" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106204" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="479" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E472040" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104908" e_stop="104955"/>
          <exon e_start="105059" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTG</genome_strand>
        <mrna_strand>CAACAATCTACTCCAGTTGTGAAGAAGAAAAAACTTATCCAAATTCAG.......................................................................................................AAATGGCGACCACTCAGCTAACAGCATCGTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGGCCGTATCTTTTACCCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTGGTTGTCAAGGCTGCCACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACTCTTAAGCCTTTGGGCGACAGAGTGTTGGTGAAGATTAAGACCGCGGAGGAGAAAACTGTTGGTGGTATCCTACTTCCAGTAACAGCCCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAGATCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCAAAGTACGCGGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E697618" ref_strand="+" ref_description="SGN-E697618 [FA03CD12]">
      <seq>cgctatttactccagttgagaagaagaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttgtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcaatgaattcaaaggtgctgatggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104611" stop="107264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104909" g_stop="104955" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="228" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="407" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="563" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="641" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="106964" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="766" r_length="125" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E697618" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104909" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="106964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATC</genome_strand>
        <mrna_strand>CGCTATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTT-GTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAATGAATTCAAAGGTGCTGATGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E339114" ref_strand="+" ref_description="SGN-E339114 [cTOF-6-E12]">
      <seq>aacaatttactccagttgagaagaagaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgangcagccaaggagaagccttcaattggcacgattattagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccacttttcagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104609" stop="107199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104909" g_stop="104955" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="228" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="408" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="564" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="642" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="106899" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="704" r_length="62" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E339114" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104909" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="106899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTA-TAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCAC-TTTCAGTA</genome_strand>
        <mrna_strand>AACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGANGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATTAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTTCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E267426" ref_strand="+" ref_description="SGN-E267426 [cLEI-8-E18]">
      <seq>aacaatttactccagttgagaagaagaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104609" stop="106993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104909" g_stop="104955" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="228" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="408" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="564" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106693" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="591" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E267426" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104909" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCT</genome_strand>
        <mrna_strand>AACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E266030" ref_strand="+" ref_description="SGN-E266030 [cLEI-6-L24]">
      <seq>aacaatttactccagtggagaagaagaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104609" stop="106546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104909" g_stop="104955" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="228" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="408" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106246" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="525" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E266030" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104909" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTC</genome_strand>
        <mrna_strand>AACAATTTACTCCAGTGGAGAAGAAGAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E707932" ref_strand="+" ref_description="SGN-E707932 [FA34BE05]">
      <seq>ctttattccagttgagaagaagaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcagggtgtctgatgtaatggctgtgctatcttagtgggactattgagttattccgtggcaaaaatttcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104614" stop="107350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104913" g_stop="104955" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.95"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="224" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="404" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="560" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="638" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="107050" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="849" r_length="211" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E707932" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104913" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGC</genome_strand>
        <mrna_strand>CTTTATTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGGCAAAAATTTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E311943" ref_strand="+" ref_description="SGN-E311943 [cTOA-16-I19]">
      <seq>tttactccagttgagaagaagaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104614" stop="106557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104914" g_stop="104955" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="223" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="403" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106257" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="531" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E311943" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104914" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCA</genome_strand>
        <mrna_strand>TTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E726091" ref_strand="+" ref_description="SGN-E726091 [LA10BB08]">
      <seq>ctccagttgagaagaagaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104618" stop="106570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104918" g_stop="104955" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="219" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="399" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106270" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="538" r_length="139" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E726091" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104918" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGAC</genome_strand>
        <mrna_strand>CTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTG-AAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATT-AATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E317041" ref_strand="+" ref_description="SGN-E317041 [cTOA-27-O21]">
      <seq>tccagttgagaagaagaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaaggaacaggaaaccactttcagtatcccaggaaatacagttctctattcaaatatgccggcagtgaaattcaaggtgctgatggatctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104619" stop="107268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104919" g_stop="104955" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="218" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="398" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="554" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="632" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="106968" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="758" r_length="126" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E317041" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104919" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="106968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGAT</genome_strand>
        <mrna_strand>TCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAA-GGAACAGGAAACCACTTTCAGTAT-CCCAGGAAATACAGTTCTCTATT-CAAATATGCCGGCAGTGAAATTCAAGGTGCTGATGGATCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E243030" ref_strand="+" ref_description="SGN-E243030 [cLEF-1-L3]">
      <seq>tccagttgagaagaagaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104619" stop="106553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104919" g_stop="104955" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="218" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="398" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106253" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="522" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E243030" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104919" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATC</genome_strand>
        <mrna_strand>TCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E465583" ref_strand="+" ref_description="SGN-E465583 [cPRO-21-H21]">
      <seq>gttgtgaagaagaaaaaacttatccaaattcagaaatggcgaccactcagctaacagcatcgtctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaaggccgtatcttttgcccctttgaagcacaacaacagcaggtcttttagtcgtctggttgtcaaggctgccaccaccgtagctcctaagtacactactcttaagcctttgggtgacagagtgttggtgaagattaagatcgcggaggagaagactgttggtggtatcctacttccagtaacagcccagtcgaaacctaacggaggtgaggtggttgctgttggggagggtcattcagctggcaagatcaaagtggacattagtgtgaagactggtgcccaagtcatctactcaaagtacgcgggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgccgaagctgaagaaaaaactgctggaggcttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgtcgggcctggtcctattgatgaagaanggacaggaaaccactttcagtatccccangaaatacggttctctactccaaatatgcaggcagtgaattcaaaggggctgatggttctgatacattacactcaggntgtctgatgtaatggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104623" stop="107301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104923" g_stop="104955" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105058" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105059" g_stop="105234" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="209" r_length="176" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="389" r_length="180" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="545" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="623" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="107001" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="783" r_length="160" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E465583" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104923" e_stop="104955"/>
          <exon e_start="105059" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCT</genome_strand>
        <mrna_strand>GTTGTGAAGAAGAAAAAACTTATCCAAATTCAG.......................................................................................................AAATGGCGACCACTCAGCTAACAGCATCGTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGGCCGTATCTTTTGCCCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTGGTTGTCAAGGCTGCCACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACTCTTAAGCCTTTGGGTGACAGAGTGTTGGTGAAGATTAAGATCGCGGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTAACAGCCCAGTCGAAACCTAACGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAGATCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCAAAGTACGCGGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGAAGCTGAAGAAAAAACTGCTGGAGGCTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTCGGGCCTGGTCCTATTGATGAAGAANGG-ACAGGAAACCACTTTCAGTATCCCCANGAAATACGGTTCTCTACTCCAAATATGCAGGCAGTGAATTCAAAGGGGCTGATGGTTCTGA-TACATTACACTCAGGNTGTCTGATGTAATGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E419626" ref_strand="+" ref_description="SGN-E419626 [STM-29-P2]">
      <seq>ttgtgaagaagaaaaaacttatccaaattcagaaatggcgaccactcagctaacagcatcgtctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaaggccgtatcttttacccctttgaagcacaacaacagcaggtcttttagtcgtctggttgtcaaggctgccaccaccgtagctcctaagtacactactcttaagcctttgggcgacagagtgttggtgaagattaagaccgcggaggagaaaactgttggtggtatcctacttccagtaacagcccagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaagatcaaagtggacattagtgtgaagactggtgcccaagtcatctactcaaagtacgcgggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgccgaagctgaagaaaaactgctggangcttactgttgactgangcagccaaggagaagccttcattggctcgattatagccgtcgggcctggtcctattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104624" stop="107051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104924" g_stop="104955" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105058" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105059" g_stop="105234" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="208" r_length="176" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="388" r_length="180" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="544" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="620" r_length="76" r_score="0.897"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="106869" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="650" r_length="30" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E419626" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104924" e_stop="104955"/>
          <exon e_start="105059" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="106869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGAT</genome_strand>
        <mrna_strand>TTGTGAAGAAGAAAAAACTTATCCAAATTCAG.......................................................................................................AAATGGCGACCACTCAGCTAACAGCATCGTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGGCCGTATCTTTTACCCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTGGTTGTCAAGGCTGCCACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACTCTTAAGCCTTTGGGCGACAGAGTGTTGGTGAAGATTAAGACCGCGGAGGAGAAAACTGTTGGTGGTATCCTACTTCCAGTAACAGCCCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAGATCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCAAAGTACGCGGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGAAGCTGAAG-AAAAACTGCTGGANGCTTACTGTTGACTGANGCAGCCAAGGAGAAGCCTTC-ATTGGCTCG...............................................................................................ATTATAGCCGTCGGGCCTGGTCCTATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E444500" ref_strand="+" ref_description="SGN-E444500 [cSTA-43-K11]">
      <seq>ttgtgaagaagaaaaaacttatccaaattcagaaatggcgaccactcagctaacagcatcgtctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaaggccgtatcttttacccctttgaagcacaacaacagcaggtcttttagtcgtctggttgtcaaggctgccaccaccgtagctcctaagtacactactcttaagcctttgggcgacagagtgttggtgaagattaagaccgcggaggagaaaactgttggtggtatcctacttccagtaacagcccagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaagatcaaagtggacattagtgtgaagactggtgcccaagtcatctactcaaagtacgcgggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgccgaagctgaagaaaaaactgctggaggcttactgttgactgaggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104624" stop="107017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104924" g_stop="104955" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105058" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105059" g_stop="105234" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="208" r_length="176" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="388" r_length="180" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="544" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106717" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="595" r_length="51" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E444500" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104924" e_stop="104955"/>
          <exon e_start="105059" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCA</genome_strand>
        <mrna_strand>TTGTGAAGAAGAAAAAACTTATCCAAATTCAG.......................................................................................................AAATGGCGACCACTCAGCTAACAGCATCGTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGGCCGTATCTTTTACCCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTGGTTGTCAAGGCTGCCACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACTCTTAAGCCTTTGGGCGACAGAGTGTTGGTGAAGATTAAGACCGCGGAGGAGAAAACTGTTGGTGGTATCCTACTTCCAGTAACAGCCCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAGATCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCAAAGTACGCGGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGAAGCTGAAGAAAAAACTGCTGGAGGCTTACTGTTGACTGAGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E726851" ref_strand="+" ref_description="SGN-E726851 [LA13AA08]">
      <seq>cgataagaagaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcanggtgtctgatgtaatggctgtgctatcttagtgggactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104626" stop="107323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104925" g_stop="104955" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="212" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="392" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="548" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="626" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="107023" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="810" r_length="184" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E726851" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104925" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATT</genome_strand>
        <mrna_strand>CGATAAGAAGAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCANGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E707478" ref_strand="+" ref_description="SGN-E707478 [FA33AE07]">
      <seq>cagtagaagaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcagggtgtctgatgtaatggctgtgctatcttagtgggactattgagttattccgtgccaaaaatttcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104627" stop="107350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104926" g_stop="104955" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="211" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="391" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="547" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="625" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="107050" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="836" r_length="211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E707478" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104926" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGC</genome_strand>
        <mrna_strand>CAGTAGAAGAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E558569" ref_strand="+" ref_description="SGN-E558569 [17930]">
      <seq>ggcacgaggaaaaaacttatccaaatcagaaatggcgaccactcagctaacagcatcgtctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaaggccgtatcttttacccctttgaagcacaacaacagcaggtcttttagtcgtctggttgtcaaggcgtgccaccaccgtagctcctaagtacactactcttaagcctttgggcgacagagtgttggtgaagattaagaccgcggaggagaaaactgttggtggtatcctacttccagtaacagcccagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaagatcaaagtggacattagtgtgaagactggtgcccaagtcatctactcaaagtacgcgggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgccgaagctgaagaaaaaactgctggaggcttactgttgactgaggcagccaaggagaagccttcaattggctcgattatagccgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104629" stop="107051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104926" g_stop="104955" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.833"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105058" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105059" g_stop="105234" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="206" r_length="177" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="386" r_length="180" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="542" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="620" r_length="78" r_score="0.949"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="106851" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="632" r_length="12" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E558569" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104926" e_stop="104955"/>
          <exon e_start="105059" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="106851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCG-GCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTT</genome_strand>
        <mrna_strand>GGCACGAGGAAAAAACTTATCCAAA-TCAG.......................................................................................................AAATGGCGACCACTCAGCTAACAGCATCGTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGGCCGTATCTTTTACCCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTGGTTGTCAAGGCGTGCCACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACTCTTAAGCCTTTGGGCGACAGAGTGTTGGTGAAGATTAAGACCGCGGAGGAGAAAACTGTTGGTGGTATCCTACTTCCAGTAACAGCCCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAGATCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCAAAGTACGCGGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGAAGCTGAAGAAAAAACTGCTGGAGGCTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCTCG...............................................................................................ATTATAGCCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E460645" ref_strand="+" ref_description="SGN-E460645 [cPRO-31-N16]">
      <seq>gtgaagaagaaaaaacttatccaaattcagaaatggcgaccactcagctaacagcatcgtctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaaggccgtatcttttacccctttgaagcacaacaacagcaggtcttttagtcgtctggttgtcaaggctgccaccaccgtagctcctaagtacactactcttaagcctttgggcgacagagtgttggtgaagattaagaccgcggaggagaaaactgttggtggtatcctacttccagtaacagcccagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaagatcaaagtggacattagtgtgaagactggtgcccaagtcatctactcaaagtacgcgggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgccgaagctgaagaaaaactgctggaggcttactgttgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104626" stop="106589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104926" g_stop="104955" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105058" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105059" g_stop="105234" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="206" r_length="176" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="386" r_length="180" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="542" r_length="156" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E460645" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104926" e_stop="104955"/>
          <exon e_start="105059" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG</genome_strand>
        <mrna_strand>GTGAAGAAGAAAAAACTTATCCAAATTCAG.......................................................................................................AAATGGCGACCACTCAGCTAACAGCATCGTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGGCCGTATCTTTTACCCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTGGTTGTCAAGGCTGCCACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACTCTTAAGCCTTTGGGCGACAGAGTGTTGGTGAAGATTAAGACCGCGGAGGAGAAAACTGTTGGTGGTATCCTACTTCCAGTAACAGCCCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAGATCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCAAAGTACGCGGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E462976" ref_strand="+" ref_description="SGN-E462976 [cPRO-13-A22]">
      <seq>gtgaagaagaaaaaacttatccaaattcagaaatggcgaccactcagctaacagcatcgtctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaaggccgtatcttttacccctttgaagcacaacaacagcaggtcttttagtcgtctggttgtcaaggctgccaccaccgtagctcctaagtacactactcttaagcctttgggcgacagagtgttggtgaagattaagaccgcggaggagaaaactgttggtggtatcctacttccagtaacagcccagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaagatcaaagtggacattagtgtgaagactggtgcccaagtcatctactcaaagtacgcgggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgccgaagctgaagaaaaactgctggangcttactgttgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104626" stop="106589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104926" g_stop="104955" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105058" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105059" g_stop="105234" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="206" r_length="176" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="386" r_length="180" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="542" r_length="156" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E462976" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104926" e_stop="104955"/>
          <exon e_start="105059" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG</genome_strand>
        <mrna_strand>GTGAAGAAGAAAAAACTTATCCAAATTCAG.......................................................................................................AAATGGCGACCACTCAGCTAACAGCATCGTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGGCCGTATCTTTTACCCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTGGTTGTCAAGGCTGCCACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACTCTTAAGCCTTTGGGCGACAGAGTGTTGGTGAAGATTAAGACCGCGGAGGAGAAAACTGTTGGTGGTATCCTACTTCCAGTAACAGCCCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAGATCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCAAAGTACGCGGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E731812" ref_strand="+" ref_description="SGN-E731812 [LA28BA08]">
      <seq>agaagaagaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcanggtgtctgatgtaatggctgtgctatcttagtgggactattgagttattccgtgccaaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104627" stop="107345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104927" g_stop="104955" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="210" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="390" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="546" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="624" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="107045" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="830" r_length="206" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E731812" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104927" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATT</genome_strand>
        <mrna_strand>AGAAGAAGAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCANGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E252160" ref_strand="+" ref_description="SGN-E252160 [cLEG-8-O22]">
      <seq>agaagaagaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104627" stop="107011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104927" g_stop="104955" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="210" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="390" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="546" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106711" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="591" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E252160" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104927" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACT</genome_strand>
        <mrna_strand>AGAAGAAGAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E455047" ref_strand="+" ref_description="SGN-E455047 [cSTS-25-M1]">
      <seq>gaagaagaaaaaacttatccaaattcagaaatggcgaccactcagctaacagcatcgtctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaaggccgtatcttttacccctttgaagcacaacaacagcaggtcttttagtcgtctggttgtcaaggctgccaccaccgtagctcctaagtacactactcttaagcctttgggcgacagagtgttggtgaagattaagaccgcggaggagaaaactgttggtggtatcctacttccagtaacagcccagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaagatcaaagtggacattagtgtgaagactggtgcccaagtcatctactcaaagtacgcgggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgccgaagctgaagaaaaaactgctggaggcttactgttgactgangcagccaaggagaagccttcaattggctcgattatagccgtcgggcctggtcctattgatgaagaagggaacaggaaaccactttcagtatccccagaaaatacagttctctactccaatatgcangcagtgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104628" stop="107246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104928" g_stop="104955" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105058" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105059" g_stop="105234" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="204" r_length="176" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="384" r_length="180" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="540" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="618" r_length="78" r_score="0.936"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="106946" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="724" r_length="106" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E455047" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104928" e_stop="104955"/>
          <exon e_start="105059" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="106946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATT</genome_strand>
        <mrna_strand>GAAGAAGAAAAAACTTATCCAAATTCAG.......................................................................................................AAATGGCGACCACTCAGCTAACAGCATCGTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGGCCGTATCTTTTACCCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTGGTTGTCAAGGCTGCCACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACTCTTAAGCCTTTGGGCGACAGAGTGTTGGTGAAGATTAAGACCGCGGAGGAGAAAACTGTTGGTGGTATCCTACTTCCAGTAACAGCCCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAGATCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCAAAGTACGCGGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGAAGCTGAAGAAAAAACTGCTGGAGGCTTACTGTTGACTGANGCAGCCAAGGAGAAGCCTTCAATTGGCTCG...............................................................................................ATTATAGCCGTCGGGCCTGGTCCTATTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGAAAATACAGTTCTCTACTCC-AATATGCANGCAGTGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E705450" ref_strand="+" ref_description="SGN-E705450 [FA27AG05]">
      <seq>agaagaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcagggtgtctgatgtaatggctgtgctatcttagtgggactattgagttattccgtgccaaaaatttcagcagagatctangaaggaggaagagctgcatccaactttcgagtgaggagtaatactctctgcaaattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104630" stop="107420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104930" g_stop="104955" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="207" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="387" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="543" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="621" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="107120" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="902" r_length="281" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E705450" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104930" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATG</genome_strand>
        <mrna_strand>AGAAGAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTANGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E317500" ref_strand="+" ref_description="SGN-E317500 [cTOB-17-G15]">
      <seq>agaagaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104630" stop="106568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104930" g_stop="104955" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="207" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="387" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106268" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="526" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E317500" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104930" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATG</genome_strand>
        <mrna_strand>AGAAGAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E699160" ref_strand="+" ref_description="SGN-E699160 [FA08DF10]">
      <seq>cccgtttaaacttatccaaattcagaaaaaaaatggcgtccactccgctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgcaaagaccgcatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaacactgcccacgagaacactgttggtggcatcctacttccagtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104749" stop="106259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104931" g_stop="104955" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.760"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="206" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="105959" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="298" r_length="92" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E699160" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104931" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="105959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATC</genome_strand>
        <mrna_strand>CCCGTTTAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCCGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGCAAAGACCGCATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAACACTGCCCACGAGAACACTGTTGGTGGCATCCTACTTCCAGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E259084" ref_strand="+" ref_description="SGN-E259084 [cLEG-41-O18]">
      <seq>aagaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104632" stop="106545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104932" g_stop="104955" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="205" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="385" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106245" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="501" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E259084" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104932" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGT</genome_strand>
        <mrna_strand>AAGAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E698618" ref_strand="+" ref_description="SGN-E698618 [FA07AB10]">
      <seq>cgataaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtaactcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcaaaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcatgaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcacaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtccctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacggttctctattcccaaatatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104634" stop="107234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104933" g_stop="104955" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="204" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="384" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="540" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="618" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="106934" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="715" r_length="97" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E698618" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104933" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="106934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGT-CCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATT-CCAAATATGC</genome_strand>
        <mrna_strand>CGATAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAACTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAAAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCATGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCACAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACGGTTCTCTATTCCCAAATATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E701296" ref_strand="+" ref_description="SGN-E701296 [FA15CC11]">
      <seq>gaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcanggtgtctgatgtaatggctgtgctatcttagtgggactattgagttattccgtgccaaaatttcagcagagatctaggaaggaggaagagctgcatccaactttcgagtgaggagtaatactctctgcaaattaatgatcaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104634" stop="107428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104934" g_stop="104955" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="203" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="383" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="539" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="617" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="107128" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="905" r_length="288" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E701296" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104934" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATAT</genome_strand>
        <mrna_strand>GAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCANGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCC-AAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E729560" ref_strand="+" ref_description="SGN-E729560 [LA21BG02]">
      <seq>gaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcagggtgtctgatgtaatggctgtgctatcttagtgggactattgagttattccgtgccaaaaatttcagcagagatctaggaaggaggaagagctgcatccnactttcgagtgaggagtaatactctctgcaaattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104634" stop="107420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104934" g_stop="104955" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="203" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="383" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="539" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="617" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="107120" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="898" r_length="281" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E729560" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>898</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104934" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATG</genome_strand>
        <mrna_strand>GAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCNACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E689267" ref_strand="+" ref_description="SGN-E689267 [t3_tus_80_M22]">
      <seq>gaaaaaacttatccttattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccnaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcagggtgtctgatgtaatggctgtgctatcttagtgggactattgagttattccgtgccaaaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104749" stop="107346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104934" g_stop="104955" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="203" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="383" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="539" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="617" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="107046" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="824" r_length="207" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E689267" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104934" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTT</genome_strand>
        <mrna_strand>GAAAAAACTTATCCTTATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCNAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E702290" ref_strand="+" ref_description="SGN-E702290 [FA18BC08]">
      <seq>gaaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcagggtgtctgatgtaatggctgtgctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104634" stop="107309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104934" g_stop="104955" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="203" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="383" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="539" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="617" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="107009" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="787" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E702290" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104934" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATC</genome_strand>
        <mrna_strand>GAAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E704505" ref_strand="+" ref_description="SGN-E704505 [FA24BH10]">
      <seq>gaaaaaacttatccaaattcaggtacccttttgcttctaaattcttcttctttgcattaattttccttttccgattgagtatactaaccaattttcattgtttaatttgattgggtttagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104634" stop="107273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104934" g_stop="105234" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="481" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="637" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="715" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106840" g_stop="106973" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="849" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E704505" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104934" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="106973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATAT</genome_strand>
        <mrna_strand>GAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E456253" ref_strand="+" ref_description="SGN-E456253 [cSTS-29-A9]">
      <seq>gaaaaaaattatccaaattcagaaatggcgaccactcagctaacagcatcgtctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaaggccgtatcttttgcccctttgaagcacaacaacagcaggtcttttagtcgtctggttgtcaaggctgccaccaccgtagctcctaagtacactactcttaagcctttgggtgacagagtgttggtgaagattaagatcgcggaggagaagactgttggtggtatcctacttccagtaacagcccagtcgaaacctaacggaggtgaggtggttgctgttggggagggtcattcagctggcaagatcaaagtggacattagtgtgaagactggtgcccaagtcatctactcaaagtacgcgggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgccgaagctgaagaaaaaaactgctggaggcttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgtcgggcctggtcctattgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104757" stop="107054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104934" g_stop="104955" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105058" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105059" g_stop="105234" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="198" r_length="176" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="378" r_length="180" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="534" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="613" r_length="79" r_score="0.936"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="106871" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="645" r_length="32" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E456253" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104934" e_stop="104955"/>
          <exon e_start="105059" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="106871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAG-AAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGA</genome_strand>
        <mrna_strand>GAAAAAAATTATCCAAATTCAG.......................................................................................................AAATGGCGACCACTCAGCTAACAGCATCGTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGGCCGTATCTTTTGCCCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTGGTTGTCAAGGCTGCCACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACTCTTAAGCCTTTGGGTGACAGAGTGTTGGTGAAGATTAAGATCGCGGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTAACAGCCCAGTCGAAACCTAACGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAGATCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCAAAGTACGCGGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGAAGCTGAAGAAAAAAACTGCTGGAGGCTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTCGGGCCTGGTCCTATTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E476139" ref_strand="+" ref_description="SGN-E476139 [cSTB-43-O10]">
      <seq>gaaaaaacttatccaaattcataaatggcgaccactcagctaacagcatcgtctatctctggcaatggttatgcatcctttgaagggctcaggtccacttgcattgtaaaggccgtatcttttgcccctttgaagcacaacaacagcaggtcttttattcgtctggttgacaaagctgccaccaccgtaactcctaagtacactactcttaagcctttgggtgacagagtgttggtgaagattaagatcgcggaggagaagactgttggtggtattctactttcagtcacagcccagtcgaaacctaacggatgtgaggtggttgctgttggggagggtcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104634" stop="106313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104934" g_stop="104955" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105058" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105059" g_stop="105234" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="198" r_length="176" r_score="0.932"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.86"/>
            <acceptor a_prob="0.989" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106013" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="344" r_length="146" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E476139" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104934" e_stop="104955"/>
          <exon e_start="105059" e_stop="105234"/>
          <exon e_start="105868" e_stop="106013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTC</genome_strand>
        <mrna_strand>GAAAAAACTTATCCAAATTCAT.......................................................................................................AAATGGCGACCACTCAGCTAACAGCATCGTCTATCTCTGGCAATGGTTATGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGGCCGTATCTTTTGCCCCTTTGAAGCACAACAACAGCAGGTCTTTTATTCGTCTGGTTGACAAAGCTGCCACCACCGTAACTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACTCTTAAGCCTTTGGGTGACAGAGTGTTGGTGAAGATTAAGATCGCGGAGGAGAAGACTGTTGGTGGTATTCTACTTTCAGTCACAGCCCAGTCGAAACCTAACGGATGTGAGGTGGTTGCTGTTGGGGAGGGTCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E727809" ref_strand="+" ref_description="SGN-E727809 [LA15DC02]">
      <seq>aaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcagggtgtctgatgtaatggctgtgctatcttagtgggactattgagttattccgtgccaaaaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104635" stop="107347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104935" g_stop="104955" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="202" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="382" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="538" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="616" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="107047" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="824" r_length="208" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E727809" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104935" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTC</genome_strand>
        <mrna_strand>AAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E257340" ref_strand="+" ref_description="SGN-E257340 [cLEG-45-A19]">
      <seq>aaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattanatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgangcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcagggtgtctgatgtaatggctgtgctatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104635" stop="107311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104935" g_stop="104955" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="202" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="382" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="538" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.926" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="616" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="107011" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="788" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E257340" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104935" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTT</genome_strand>
        <mrna_strand>AAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTANATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGANGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E320486" ref_strand="+" ref_description="SGN-E320486 [cTOB-22-A5]">
      <seq>aaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaaggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgatatattaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104635" stop="107277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104935" g_stop="104955" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="202" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="382" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="538" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="616" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="106977" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="752" r_length="136" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E320486" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104935" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="106977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACA</genome_strand>
        <mrna_strand>AAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAA-GGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGA-TATATTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E252862" ref_strand="+" ref_description="SGN-E252862 [cLEG-16-O14]">
      <seq>aaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgangcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaaaggaacaggaaaccactttcagtatccccaggaaatacagttctctatttcaaatatgcccgcagtgaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104635" stop="107247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104935" g_stop="104955" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="202" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="382" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="538" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="616" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="106947" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="724" r_length="108" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E252862" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104935" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="106947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTC</genome_strand>
        <mrna_strand>AAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGANGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAAGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTTCAAATATGCCCGCAGTGAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E610717" ref_strand="+" ref_description="SGN-E610717 [57883]">
      <seq>aaaaaacttatccaaattcagaaatggcgaccactcagctaacagcatcgtctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaaggccgtatcttttacccctttgaagcacaacaacagcaggtcttttagtcgtctggttgtcaaggctgccaccaccgtagctcctaagtacactactcttaagcctttgggcgacagagtgttggtgaagattaagaccgcggaggagaaaactgttggtggtatcctacttccagtaacagcccagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaagatcaaagtggacattagtgtgaagactggtgcccaagtcatctactcaaagtacgcgggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgccgaagctgaagaaaaaactgctggaggcttactgttgactgaggcagccaaggagaagccttcaatttggctcgattatagccgtcgggcctggtcctattgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacaggtctctactccaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104635" stop="107230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104935" g_stop="104955" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105058" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105059" g_stop="105234" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="197" r_length="176" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="377" r_length="180" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="533" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="612" r_length="79" r_score="0.923"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="106930" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="703" r_length="91" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E610717" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E610717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104935" e_stop="104955"/>
          <exon e_start="105059" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="106930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAA-TTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAAT</genome_strand>
        <mrna_strand>AAAAAACTTATCCAAATTCAG.......................................................................................................AAATGGCGACCACTCAGCTAACAGCATCGTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGGCCGTATCTTTTACCCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTGGTTGTCAAGGCTGCCACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACTCTTAAGCCTTTGGGCGACAGAGTGTTGGTGAAGATTAAGACCGCGGAGGAGAAAACTGTTGGTGGTATCCTACTTCCAGTAACAGCCCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAGATCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCAAAGTACGCGGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGAAGCTGAAGAAAAAACTGCTGGAGGCTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTTGGCTCG...............................................................................................ATTATAGCCGTCGGGCCTGGTCCTATTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGGTCTCTACTCCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E558476" ref_strand="+" ref_description="SGN-E558476 [17822]">
      <seq>aaaaaacttatccaaatcagaaatggcgacactcagctaacagcatcgtctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaaggccgtatcttttacccctttgaagcacaacaacagcaggtcttttagtcgtctggttgtcaaggctgccaccaccgtagctcctaagtacactactcttaagcctttgggcgacagagtgttggtgaagattaagaccgcggaggagaaaactgttggtggtatcctacttccagtaacagcccagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaagatcaaagtggacattagtgtgaagactggtgcccaagtcatctactcaaagtacgcgggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgccgaagctgaagaaaaaactgctggaggcttactgttgactgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104635" stop="107015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104935" g_stop="104955" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105058" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105059" g_stop="105234" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="195" r_length="175" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="375" r_length="180" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="531" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106715" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="580" r_length="49" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E558476" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104935" e_stop="104955"/>
          <exon e_start="105059" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGG</genome_strand>
        <mrna_strand>AAAAAACTTATCCAAAT-CAG.......................................................................................................AAATGGCG-ACACTCAGCTAACAGCATCGTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGGCCGTATCTTTTACCCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTGGTTGTCAAGGCTGCCACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACTCTTAAGCCTTTGGGCGACAGAGTGTTGGTGAAGATTAAGACCGCGGAGGAGAAAACTGTTGGTGGTATCCTACTTCCAGTAACAGCCCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAGATCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCAAAGTACGCGGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGAAGCTGAAGAAAAAACTGCTGGAGGCTTACTGTTGACTGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E414632" ref_strand="+" ref_description="SGN-E414632 [STM-19-J14]">
      <seq>aaaaaacttatccaaattcagaaatggcgaccactcagctaacagcatcgtctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaaggccgtatcttttacccctttgaagcacaacaacagcaggtcttttagtcgtctggttgtcaaggctgccaccaccgtagctcctaagtacactactcttaagcctttgggcgacagagtgttggtgaagattaagaccgcggaggagaaaactgttggtggtatcctacttccagtaacagcccagtcgaaacctaatggatgtgaggtggttgctgttggggagggtcattcagctggcaagatcaaagtggacattagtgtgaagactggtgcccaagtcatctactcaaagtacgcgggaactgacgtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaatgttgccgaagctgaagaaaaaactgctggaggcttactgttgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104635" stop="107012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104935" g_stop="104955" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105058" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105059" g_stop="105234" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="197" r_length="176" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="377" r_length="180" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.947" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="533" r_length="156" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.926" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106712" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="579" r_length="46" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E414632" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104935" e_stop="104955"/>
          <exon e_start="105059" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTG</genome_strand>
        <mrna_strand>AAAAAACTTATCCAAATTCAG.......................................................................................................AAATGGCGACCACTCAGCTAACAGCATCGTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGGCCGTATCTTTTACCCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTGGTTGTCAAGGCTGCCACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACTCTTAAGCCTTTGGGCGACAGAGTGTTGGTGAAGATTAAGACCGCGGAGGAGAAAACTGTTGGTGGTATCCTACTTCCAGTAACAGCCCAGTCGAAACCTAATGGATGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAGATCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCAAAGTACGCGGGAACTGACGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAT.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGAAGCTGAAGAAAAAACTGCTGGAGGCTTACTGTTGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E288967" ref_strand="+" ref_description="SGN-E288967 [cLES-17-O24]">
      <seq>aaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaacactgcagacgagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgagggggttgctgttggggagggtcattcacctggcaaaaccaaaggggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcatgaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgtcggtattcttgagacagacgatgtcaaggatctgcagccattaaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104635" stop="106570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104935" g_stop="104955" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="202" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="382" r_length="180" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106270" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="523" r_length="141" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E288967" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104935" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGAC</genome_strand>
        <mrna_strand>AAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAACACTGCAGACGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGGGGTTGCTGTTGGGGAGGGTCATTCACCTGGCAAAACCAAAGGGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCATGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTCGGTATTCTTGAGACAGACGATGTCAAGGATCTGCAGCCATTAAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E272662" ref_strand="+" ref_description="SGN-E272662 [cLEM-21-A5]">
      <seq>aaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaaccagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104635" stop="106570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104935" g_stop="104955" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="203" r_length="182" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="383" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106270" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="524" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E272662" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104935" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAA-CAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGAC</genome_strand>
        <mrna_strand>AAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACCAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E326269" ref_strand="+" ref_description="SGN-E326269 [cTOC-14-G15]">
      <seq>aaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgaacagagtcttggtgaagattaagaactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaagatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104635" stop="106569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104935" g_stop="104955" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="202" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="384" r_length="182" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106269" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="524" r_length="140" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E326269" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104935" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCG-ACAGAGTCTTGGTGAAGATTAAG-ACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGA</genome_strand>
        <mrna_strand>AAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGAACAGAGTCTTGGTGAAGATTAAGAACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAAGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E474192" ref_strand="+" ref_description="SGN-E474192 [cSTB-35-B8]">
      <seq>aaaaaacttatccaaattcagaaatggcgaccactcagctaacagcatcgtctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaaggccgtatcttttacccctttgaagcacaacaacagcaggtcttttagtcgtctggttgtcaaggctgccaccaccgtagctcctaagtacactactcttaagcctttgggcgacagagtgttggtgaagattaagaccgcggaggagaaaactgttggtggtatcctacttccagtaacagcccagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaagatcaaagtggacattagtgtgaagactggtgcccaagtcatctactcaaagtacgcgggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104635" stop="106567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104935" g_stop="104955" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105058" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105059" g_stop="105234" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="197" r_length="176" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="377" r_length="180" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106267" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="515" r_length="138" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E474192" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E474192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104935" e_stop="104955"/>
          <exon e_start="105059" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAAT</genome_strand>
        <mrna_strand>AAAAAACTTATCCAAATTCAG.......................................................................................................AAATGGCGACCACTCAGCTAACAGCATCGTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGGCCGTATCTTTTACCCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTGGTTGTCAAGGCTGCCACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACTCTTAAGCCTTTGGGCGACAGAGTGTTGGTGAAGATTAAGACCGCGGAGGAGAAAACTGTTGGTGGTATCCTACTTCCAGTAACAGCCCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAGATCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCAAAGTACGCGGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E249019" ref_strand="+" ref_description="SGN-E249019 [cLEF-49-A6]">
      <seq>aaaaaacttatccaaattcagaaaaaaaatggcgtcccactcagctaaccagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104635" stop="106555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104935" g_stop="104955" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="204" r_length="183" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="384" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106255" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="510" r_length="126" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E249019" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104935" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGT-CCACTCAGCTAA-CAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTG</genome_strand>
        <mrna_strand>AAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCCACTCAGCTAACCAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E273230" ref_strand="+" ref_description="SGN-E273230 [cLEM-24-I17]">
      <seq>aaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104635" stop="106545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104935" g_stop="104955" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="202" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="382" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106245" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="498" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E273230" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104935" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGT</genome_strand>
        <mrna_strand>AAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E443999" ref_strand="+" ref_description="SGN-E443999 [cSTA-41-C13]">
      <seq>aaaaaacttatccaaattcagaaatggcgaccactcagctaacagcatcgtctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaaggccgtatcttttgcccctttgaagcacaacaacagcaggtcttttagtcgtctggttgtcaaggctgccaccaccgtagctcctaagtacactactcttaagcctttgggtgacagagtgttggtgaagattaagatcgcggaggagaagactgttggtggtatcctacttccagtaacagcccagtcgaaacctaacggaggtgaggtggttgctgttggggagggtcattcagctggcaagatcaaagtggacattaatgtgaagactggtgcccaagtcatctactcaaagtacgccggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104635" stop="106531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104935" g_stop="104955" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105058" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105059" g_stop="105234" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="197" r_length="176" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="377" r_length="180" r_score="0.928"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106231" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="479" r_length="102" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E443999" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104935" e_stop="104955"/>
          <exon e_start="105059" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTT</genome_strand>
        <mrna_strand>AAAAAACTTATCCAAATTCAG.......................................................................................................AAATGGCGACCACTCAGCTAACAGCATCGTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGGCCGTATCTTTTGCCCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTGGTTGTCAAGGCTGCCACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACTCTTAAGCCTTTGGGTGACAGAGTGTTGGTGAAGATTAAGATCGCGGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTAACAGCCCAGTCGAAACCTAACGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAGATCAAAGTGGACATTAATGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCAAAGTACGCCGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E309494" ref_strand="+" ref_description="SGN-E309494 [cTOA-2-O4]">
      <seq>aaaaaacttatccatattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcttaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcangaactgaggtggagtttgatggatcaaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104749" stop="106494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104935" g_stop="104955" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="202" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="382" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106194" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="447" r_length="65" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E309494" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104935" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCA</genome_strand>
        <mrna_strand>AAAAAACTTATCCATATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCTTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCANGAACTGAGGTGGAGTTTGATGGATCAAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E470695" ref_strand="+" ref_description="SGN-E470695 [cSTB-20-M1]">
      <seq>aaaaaacttatccaaattcagaaatggcgaccactcagctaacagcatcgtctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaaggccgtatcttttacccctttgaagcacaacaacagcaggtcttttagtcgtctggttgtcaaggctgccaccaccgtagctcctaagtacactactcttaagcctttgggcgacagagtgttggtgaagattaagaccgcggaggagaaaactgttggtggtatcctacttccagtaacagcccagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaagatcaaagtggacattagtgtgaagactggtgcccaagtcatctactcaaagtacgcgggaactgaggtggagtttgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104635" stop="106486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104935" g_stop="104955" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105058" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105059" g_stop="105234" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="197" r_length="176" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="377" r_length="180" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106186" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="434" r_length="57" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E470695" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104935" e_stop="104955"/>
          <exon e_start="105059" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGA</genome_strand>
        <mrna_strand>AAAAAACTTATCCAAATTCAG.......................................................................................................AAATGGCGACCACTCAGCTAACAGCATCGTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGGCCGTATCTTTTACCCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTGGTTGTCAAGGCTGCCACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACTCTTAAGCCTTTGGGCGACAGAGTGTTGGTGAAGATTAAGACCGCGGAGGAGAAAACTGTTGGTGGTATCCTACTTCCAGTAACAGCCCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAGATCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCAAAGTACGCGGGAACTGAGGTGGAGTTTGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E321255" ref_strand="+" ref_description="SGN-E321255 [cTOB-23-I23]">
      <seq>aaaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104635" stop="106451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104935" g_stop="104955" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="202" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="382" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106151" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="404" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E321255" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104935" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACT</genome_strand>
        <mrna_strand>AAAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E243335" ref_strand="+" ref_description="SGN-E243335 [cLEF-16-G7]">
      <seq>aaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcacgaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacatagtcctaatcaaggttgcagaagctgaacaaaaaaccgctggaggtttactgttgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104636" stop="107012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104936" g_stop="104955" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="201" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="381" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="537" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.926" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106712" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="583" r_length="46" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E243335" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104936" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTG</genome_strand>
        <mrna_strand>AAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCACGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACATAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAACAAAAAACCGCTGGAGGTTTACTGTTGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E274942" ref_strand="+" ref_description="SGN-E274942 [cLEN-16-J4]">
      <seq>aaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104636" stop="106582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104936" g_stop="104955" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="201" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="381" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106282" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="534" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E274942" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104936" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATC</genome_strand>
        <mrna_strand>AAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E243299" ref_strand="+" ref_description="SGN-E243299 [cLEF-12-F1]">
      <seq>aaaaacttatccaaattcagaaaaaaaatgtcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaagaactgaggtggagtttgatggatcaaagcacctcattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104636" stop="106504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104936" g_stop="104955" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="201" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="381" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106204" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="456" r_length="75" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E243299" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104936" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTG</genome_strand>
        <mrna_strand>AAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGTCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAAGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E204648" ref_strand="+" ref_description="SGN-E204648 [cLEC-14-I22]">
      <seq>aaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104636" stop="106504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104936" g_stop="104955" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="201" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="381" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106204" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="456" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E204648" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104936" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTG</genome_strand>
        <mrna_strand>AAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E214443" ref_strand="+" ref_description="SGN-E214443 [cLEC-77-H1]">
      <seq>aaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104636" stop="106502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104936" g_stop="104955" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="201" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="381" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106202" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="454" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E214443" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104936" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTC</genome_strand>
        <mrna_strand>AAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E275350" ref_strand="+" ref_description="SGN-E275350 [cLEN-10-K3]">
      <seq>aaaaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104636" stop="106302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104936" g_stop="104955" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="201" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106002" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="336" r_length="135" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E275350" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104936" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGG</genome_strand>
        <mrna_strand>AAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E245124" ref_strand="+" ref_description="SGN-E245124 [cLEF-13-H16]">
      <seq>aaaaacttatccaaattcagaaaaaaaatgtcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagaatcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcaatttagtccaaacctaatggaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104636" stop="106284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104936" g_stop="104955" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="201" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="105984" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="318" r_length="117" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E245124" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104936" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="105984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGT</genome_strand>
        <mrna_strand>AAAAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGTCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAATCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAATTTAGTCCAAACCTAATGGAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E402772" ref_strand="+" ref_description="SGN-E402772 [PPC-8-N7]">
      <seq>aaaacttatccaaattcagaaatggcgaccactcagctaacagcatcgtctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaaggccgtatcttttacccctttgaagcacaacaacagcaggtcttttagtcgtctggttgtcaaggctgccaccaccgtagctcctaagtacactactcttaagcctttgggcgacagagtgttggtgaagattaagaccgcggaggagaaaactgttggtggtatcctacttccagtaacagcccagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaagatcaaagtggacattagtgtgaagactggtgcccaagtcatctactcaaagtacgcgggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaagatctgcagccattaaatgacagagtcctaatcaaggttgccgaagctgaaaaaaaaactgctggaggcttactgttgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104757" stop="106589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104937" g_stop="104955" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105058" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105059" g_stop="105234" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="195" r_length="176" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="375" r_length="180" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="531" r_length="156" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E402772" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104937" e_stop="104955"/>
          <exon e_start="105059" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG</genome_strand>
        <mrna_strand>AAAACTTATCCAAATTCAG.......................................................................................................AAATGGCGACCACTCAGCTAACAGCATCGTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGGCCGTATCTTTTACCCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTGGTTGTCAAGGCTGCCACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACTCTTAAGCCTTTGGGCGACAGAGTGTTGGTGAAGATTAAGACCGCGGAGGAGAAAACTGTTGGTGGTATCCTACTTCCAGTAACAGCCCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAGATCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCAAAGTACGCGGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAAGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E212434" ref_strand="+" ref_description="SGN-E212434 [cLEC-74-B18]">
      <seq>aaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaaggaacaggaaaccactttcagtatcccaggaaatacagttctctattccaatatgccggcagtgaattcaaaggtgctgatggatctgattatatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104749" stop="107275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104938" g_stop="104955" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="199" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="379" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="535" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="613" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="106975" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="746" r_length="133" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E212434" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104938" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="106975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTA</genome_strand>
        <mrna_strand>AAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAA-GGAACAGGAAACCACTTTCAGTAT-CCCAGGAAATACAGTTCTCTATTCC-AATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E251095" ref_strand="+" ref_description="SGN-E251095 [cLEG-17-D23]">
      <seq>aaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104749" stop="106992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104938" g_stop="104955" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="199" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="379" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="535" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106692" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="561" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E251095" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104938" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGC</genome_strand>
        <mrna_strand>AAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E283151" ref_strand="+" ref_description="SGN-E283151 [cLER-17-G14]">
      <seq>aaacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaagaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104749" stop="106556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104938" g_stop="104955" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="199" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="379" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106256" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="506" r_length="127" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E283151" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104938" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGC</genome_strand>
        <mrna_strand>AAACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAAGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E250129" ref_strand="+" ref_description="SGN-E250129 [cLEG-4-D16]">
      <seq>aaacttatccaaatttataaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaaaggctcaagtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcantcgaaacctaatggaggtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104749" stop="106287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104938" g_stop="104955" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="199" r_length="181" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="105987" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="319" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E250129" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104938" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="105987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAG</genome_strand>
        <mrna_strand>AAACTTATCCAAATTTAT..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAAGGCTCAAGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCANTCGAAACCTAATGGAGGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E283580" ref_strand="+" ref_description="SGN-E283580 [cLES-1-C11]">
      <seq>aaacttatccaaattcagaaaaaaattggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggttttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaagcctaatggaggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104749" stop="106285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104938" g_stop="104955" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="199" r_length="181" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="105985" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="317" r_length="118" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E283580" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104938" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="105985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTG</genome_strand>
        <mrna_strand>AAACTTATCCAAATTCAG..................................................................................................AAAAAAATTGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTTTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAGCCTAATGGAGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E559758" ref_strand="+" ref_description="SGN-E559758 [19304]">
      <seq>aaacttatccaaattcagaaatggcgaccactcagctaacagcatcgtctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaaggccgtatcttttacccctttgaagcacaacaacagcaggtcttttagtcgtctggttgtcaaggctggcacacgtatctcctaagtacactactcttaagcctttgggcgacagcaagtgttggtgaagattaagaccgcggaggagaaaactgttggtggtatcctactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104757" stop="106251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104938" g_stop="104955" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105058" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105059" g_stop="105234" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="192" r_length="174" r_score="0.932"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.86"/>
            <acceptor a_prob="0.989" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="105951" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="278" r_length="86" r_score="0.893"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E559758" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104938" e_stop="104955"/>
          <exon e_start="105059" e_stop="105234"/>
          <exon e_start="105868" e_stop="105951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAG--AGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTT</genome_strand>
        <mrna_strand>AAACTTATCCAAATTCAG.......................................................................................................AAATGGCGACCACTCAGCTAACAGCATCGTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGGCCGTATCTTTTACCCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTGGTTGTCAAGGCTGGCA-CA-CGTATCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACTCTTAAGCCTTTGGGCGACAGCAAGTGTTGGTGAAGATTAAGACCGCGGAGGAGAAAACTGTTGGTGGTATCCTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E277966" ref_strand="+" ref_description="SGN-E277966 [cLER-4-E20]">
      <seq>aacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104749" stop="106489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104939" g_stop="104955" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="198" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="378" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106189" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="438" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E277966" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104939" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCA</genome_strand>
        <mrna_strand>AACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E317502" ref_strand="+" ref_description="SGN-E317502 [cTOB-17-G19]">
      <seq>aacttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggtcttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttattcgtcttgttgtcaatgcggctaccaccgtatctcctaagtacactacacttaagcctttgggcgacagaatcttggtgaagattaagactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104749" stop="106219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104939" g_stop="104955" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="198" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="105919" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="250" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E317502" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>250</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104939" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="105919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTG</genome_strand>
        <mrna_strand>AACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTCTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTATTCGTCTTGTTGTCAATGCGGCTACCACCGTATCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAATCTTGGTGAAGATTAAGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E313567" ref_strand="+" ref_description="SGN-E313567 [cTOA-12-J23]">
      <seq>acttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104749" stop="106581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104940" g_stop="104955" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="197" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="377" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106281" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="529" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E313567" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104940" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAAT</genome_strand>
        <mrna_strand>ACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E267358" ref_strand="+" ref_description="SGN-E267358 [cLEI-17-M15]">
      <seq>acttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104749" stop="106578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104940" g_stop="104955" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="197" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="377" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106278" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="526" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E267358" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104940" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCT</genome_strand>
        <mrna_strand>ACTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E267359" ref_strand="+" ref_description="SGN-E267359 [cLEI-17-M17]">
      <seq>acttatccaaattcagaaaagaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaagaactgaggtggagtttgatggatcaaagcaccttattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104749" stop="106502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104940" g_stop="104955" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="197" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="377" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106202" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="450" r_length="73" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E267359" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104940" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTC</genome_strand>
        <mrna_strand>ACTTATCCAAATTCAG..................................................................................................AAAAGAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAAGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E265926" ref_strand="+" ref_description="SGN-E265926 [cLEI-6-E7]">
      <seq>cttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaagttgcagaagctgaagaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104749" stop="106989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104941" g_stop="104955" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="196" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="376" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="532" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.926" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106689" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="555" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E265926" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104941" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAAC</genome_strand>
        <mrna_strand>CTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAA.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E266047" ref_strand="+" ref_description="SGN-E266047 [cLEI-6-E11]">
      <seq>cttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcanctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaagatctgcagccattaaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104749" stop="106570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104941" g_stop="104955" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="196" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="376" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106270" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="517" r_length="141" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E266047" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104941" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGAC</genome_strand>
        <mrna_strand>CTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCANCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAAGATCTGCAGCCATTAAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E265924" ref_strand="+" ref_description="SGN-E265924 [cLEI-6-E3]">
      <seq>cttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgatggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgacgtggttgctgttggggagggtcattcatctggcaaaaccaaagtggacattaatgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgctggtattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104749" stop="106532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104941" g_stop="104955" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="196" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="376" r_length="180" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106232" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="479" r_length="103" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E265924" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104941" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTG</genome_strand>
        <mrna_strand>CTTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGATGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGACGTGGTTGCTGTTGGGGAGGGTCATTCATCTGGCAAAACCAAAGTGGACATTAATGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGCTGGTATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E320160" ref_strand="+" ref_description="SGN-E320160 [cTOB-21-L8]">
      <seq>ttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggangtttactgttgactgangcagccaaggagaagccttcaattggcacgattatagctgntgggcctggtcctcttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104749" stop="107171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104942" g_stop="104955" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="195" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="375" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="531" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="609" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="106871" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="641" r_length="32" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E320160" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104942" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="106871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGA</genome_strand>
        <mrna_strand>TTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGANGTTTACTGTTGACTGANGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGNTGGGCCTGGTCCTCTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E327229" ref_strand="+" ref_description="SGN-E327229 [cTOC-19-K5]">
      <seq>ttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaacgctggaggtttactgttgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104749" stop="107011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104942" g_stop="104955" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="195" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="375" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="531" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106711" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="575" r_length="44" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E327229" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104942" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACT</genome_strand>
        <mrna_strand>TTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAA-CGCTGGAGGTTTACTGTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E253348" ref_strand="+" ref_description="SGN-E253348 [cLEG-26-H10]">
      <seq>ttatccaaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104749" stop="106990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104942" g_stop="104955" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="195" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="375" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="531" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106690" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="555" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E253348" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104942" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACC</genome_strand>
        <mrna_strand>TTATCCAAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E322718" ref_strand="+" ref_description="SGN-E322718 [cTOB-26-D4]">
      <seq>ttatccaaattcaggtacccttttgcttctaaattcttcttctttgcattaattttccttttccgattgagtatactaaccaattttcattgtttaatttgattgggtttagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104642" stop="106269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104942" g_stop="105234" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="105969" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="395" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E322718" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104942" e_stop="105234"/>
          <exon e_start="105868" e_stop="105969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCG</genome_strand>
        <mrna_strand>TTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E479000" ref_strand="+" ref_description="SGN-E479000 [cSTD-8-G13]">
      <seq>ccaaattcagaaatggcgaccactcagctaacagcatcgtctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaaggccgtatcttttacccctttgaagcacaacaacagcaggtcttttagtcgtctggttgtcaaggctgccaccaccgtagctcctaagtacactactcttaagcctttgggcgacagagtgttggtgaagattaagaccgcggaggagaaaactgttggtggtatcctacttccagtaacagcccagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaagatcaaagtggacattagtgtgaagactggtgcccaagtcatctactcaaagtacgcgggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgccgaagctgaagaaaaaactgctggaggcttactgttgactgaggcagccaaggagaagccttcaattggctcgattatagccgtcgggcctggtcctattgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctactccaaatatgcaggcagtgaattcaaggggnctgatggttctgattacatcacactcanggtgtctgatgtaatggctgtgctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104757" stop="107309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104946" g_stop="104955" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105058" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105059" g_stop="105234" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="186" r_length="176" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="366" r_length="180" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="522" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="600" r_length="78" r_score="0.949"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="107009" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="770" r_length="170" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E479000" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104946" e_stop="104955"/>
          <exon e_start="105059" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATC</genome_strand>
        <mrna_strand>CCAAATTCAG.......................................................................................................AAATGGCGACCACTCAGCTAACAGCATCGTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGGCCGTATCTTTTACCCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTGGTTGTCAAGGCTGCCACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACTCTTAAGCCTTTGGGCGACAGAGTGTTGGTGAAGATTAAGACCGCGGAGGAGAAAACTGTTGGTGGTATCCTACTTCCAGTAACAGCCCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAGATCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCAAAGTACGCGGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGAAGCTGAAGAAAAAACTGCTGGAGGCTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCTCG...............................................................................................ATTATAGCCGTCGGGCCTGGTCCTATTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTACTCCAAATATGCAGGCAGTGAATTCAAGGGGNCTGATGGTTCTGATTACATCACACTCANGGTGTCTGATGTAATGGCTGTGCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E271430" ref_strand="+" ref_description="SGN-E271430 [cLEM-5-F15]">
      <seq>ccaaattcataaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcatgtccacttgcataggaaagaccggatcttttgctcctatgaagcacaacaacagcaggacttttagtcggcttgttgtcaaggcggctaccaccgtatctcctaagtacactacacttaagcctttgggcgaccgagtcttggtgaagattaagactgcagaggagaagactgtgggtggtatcctacttccagtatcagttcagtccaaacctaatggaggtgaggtggctgctgttggggagggtcattcacctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcacgaactgatgtggagtgtgatggatcaaagcacctcattctgaaagaggatgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104749" stop="106517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104946" g_stop="104955" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="191" r_length="181" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="371" r_length="180" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106217" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="459" r_length="88" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E271430" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104946" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATA</genome_strand>
        <mrna_strand>CCAAATTCAT..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCATGTCCACTTGCATAGGAAAGACCGGATCTTTTGCTCCTATGAAGCACAACAACAGCAGGACTTTTAGTCGGCTTGTTGTCAAGGCGGCTACCACCGTATCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACCGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTGGGTGGTATCCTACTTCCAGTATCAGTTCAGTCCAAACCTAATGGAGGTGAGGTGGCTGCTGTTGGGGAGGGTCATTCACCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCACGAACTGATGTGGAGTGTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E478988" ref_strand="+" ref_description="SGN-E478988 [cSTD-8-C13]">
      <seq>ccaaattcagaaatggcgaccactcagctaacagcatcgtctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgaaaaggccgaatctttaacccctttgaagcacaccaacagcaggtcttttagtcgtctggttgtcaaggctgccaccaccgtatctcctaagtacactactcttaagcctttgggcgacagagtgttggagaatattgacaccgcggaggagaaaactggtggtggtatcctacttccagtaacagcccagtcgaaacctaatggaggtgatgtgcttgctggtggagagggtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104757" stop="106311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104946" g_stop="104955" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105058" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105059" g_stop="105234" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="186" r_length="176" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106011" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="330" r_length="144" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E478988" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104946" e_stop="104955"/>
          <exon e_start="105059" e_stop="105234"/>
          <exon e_start="105868" e_stop="106011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCAT</genome_strand>
        <mrna_strand>CCAAATTCAG.......................................................................................................AAATGGCGACCACTCAGCTAACAGCATCGTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGAAAAGGCCGAATCTTTAACCCCTTTGAAGCACACCAACAGCAGGTCTTTTAGTCGTCTGGTTGTCAAGGCTGCCACCACCGTATCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACTCTTAAGCCTTTGGGCGACAGAGTGTTGGAGAATATTGACACCGCGGAGGAGAAAACTGGTGGTGGTATCCTACTTCCAGTAACAGCCCAGTCGAAACCTAATGGAGGTGATGTGCTTGCTGGTGGAGAGGGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E248893" ref_strand="+" ref_description="SGN-E248893 [cLEF-49-O10]">
      <seq>gagattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgagttggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104744" stop="107011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104947" g_stop="104955" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="0.778"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="190" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="370" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="526" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106711" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="571" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E248893" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104947" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACT</genome_strand>
        <mrna_strand>GAGATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGTTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E322584" ref_strand="+" ref_description="SGN-E322584 [cTOB-26-P16]">
      <seq>aaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagaatgttggtggtatcctacttccagtatcagttcagtcgaaactaatggaagtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagagatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattanatgacagagtcctaatcaaggttgcagaagctgaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104749" stop="106986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104948" g_stop="104955" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="189" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="368" r_length="179" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="523" r_length="155" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.926" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106686" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="543" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E322584" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104948" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAA</genome_strand>
        <mrna_strand>AAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGAATGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAA-CTAATGGAAGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGA-GATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTANATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E243343" ref_strand="+" ref_description="SGN-E243343 [cLEF-16-B20]">
      <seq>aaattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaagtccacttgcatagcaaagaccgtatcttttgcttctttgaagcacaacaacagcaggtcttttactcgtcttgttgtcaaggcgggtaccaccgtagctcctaattacactacacttaaacctttgggcgacagagtcttggtgaagattaagactgcacaggagaagactgaaggtggtatcctacttccagtatcagggcagtcgaaacctaatggaggtgaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104749" stop="106290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104948" g_stop="104955" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="189" r_length="181" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="105990" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="312" r_length="123" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E243343" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104948" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="105990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTG</genome_strand>
        <mrna_strand>AAATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAAGTCCACTTGCATAGCAAAGACCGTATCTTTTGCTTCTTTGAAGCACAACAACAGCAGGTCTTTTACTCGTCTTGTTGTCAAGGCGGGTACCACCGTAGCTCCTAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAACCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCACAGGAGAAGACTGAAGGTGGTATCCTACTTCCAGTATCAGGGCAGTCGAAACCTAATGGAGGTGAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E211101" ref_strand="+" ref_description="SGN-E211101 [cLEC-69-B2]">
      <seq>aattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgangcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagagggaacangaaacactttcagtatccccaggaaatacagttctctattcaaatatgccggcagtgaattcaaaggtgctgatggatctgattatatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104749" stop="107275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104949" g_stop="104955" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="188" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="368" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="524" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="602" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="106975" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="735" r_length="133" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E211101" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104949" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="106975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTA</genome_strand>
        <mrna_strand>AATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGANGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAG-AGGGAACANGAAA-CACTTTCAGTATCCCCAGGAAATACAGTTCTCTATT-CAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E201485" ref_strand="+" ref_description="SGN-E201485 [cLEC-4-I18]">
      <seq>aattcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104749" stop="106988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104949" g_stop="104955" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="188" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="368" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="524" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106688" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="546" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E201485" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104949" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAA</genome_strand>
        <mrna_strand>AATTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E252286" ref_strand="+" ref_description="SGN-E252286 [cLEG-12-H5]">
      <seq>ttcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaatgagaagccttcaattggcacgattatagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104749" stop="107053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104951" g_stop="104955" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="186" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="366" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="522" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="600" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106840" g_stop="106848" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="609" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E252286" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104951" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="106848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCT</genome_strand>
        <mrna_strand>TTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAATGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E251885" ref_strand="+" ref_description="SGN-E251885 [cLEG-14-N18]">
      <seq>ttcagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104749" stop="106989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104951" g_stop="104955" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="186" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="366" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="522" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106667" g_stop="106689" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="545" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E251885" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104951" e_stop="104955"/>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAAC</genome_strand>
        <mrna_strand>TTCAG..................................................................................................AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E327618" ref_strand="+" ref_description="SGN-E327618 [cTOC-20-J15]">
      <seq>ttgcttctaaattcttcttctttgcattaattttccttttccgattgagtatactaaccaattttcattgtttaatttgattgggtttagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104664" stop="106579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104964" g_stop="105234" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="451" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106130" g_stop="106279" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="601" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E327618" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104964" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTA</genome_strand>
        <mrna_strand>TTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E729226" ref_strand="+" ref_description="SGN-E729226 [LA20BE09]">
      <seq>atttagaaaaaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgtagggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104749" stop="107211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105048" g_stop="105234" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="367" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="523" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="601" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106840" g_stop="106911" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="673" r_length="72" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E729226" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105048" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="106911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAAT</genome_strand>
        <mrna_strand>ATTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTAGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E334854" ref_strand="+" ref_description="SGN-E334854 [cTOE-3-O14]">
      <seq>agaaaaaaaaggcgtccacctagctaacagcaccctctacctctggcaatggttttgcaccctttgaagggcccaggtccacttgcatttgtaaagaccgtattcttttgctcctttgaagcaaacaaccagcaggtcttttagtcgtcttgttgtcaaggcggctaccacccgtagctcctaagtaccacctacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaanggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104752" stop="107247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105052" g_stop="105234" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="367" r_length="182" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="523" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="601" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106840" g_stop="106947" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="709" r_length="108" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E334854" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105052" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="106947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCA-TTGTAAAGACCGTA-TCTTTTGCTCCTTTGAAGCACAACAA-CAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCA-CCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTA-CA-CTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTC</genome_strand>
        <mrna_strand>AGAAAAAAAA-GGCGTCCACCTAGCTAACAGCACCCTCTACCTCTGGCAATGGTTTTGCACCCTTTGAAGGGCCCAGGTCCACTTGCATTTGTAAAGACCGTATTCTTTTGCTCCTTTGAAGCA-AACAACCAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCACCTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAANGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E266906" ref_strand="+" ref_description="SGN-E266906 [cLEI-7-O3]">
      <seq>atcccccgggctgcaagcttatccaatttcagaaaaaaaatgtcgtccactcagctaacatcatcctctatctctggcaatggttttgcatcctttgaagggctcaagtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaagtcttttagtcgtcttgttgtcaaagcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104749" stop="106280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105054" g_stop="105234" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="213" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="105980" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="326" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E266906" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105054" e_stop="105234"/>
          <exon e_start="105868" e_stop="105980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGG</genome_strand>
        <mrna_strand>AAAAAAAATGTCGTCCACTCAGCTAACATCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAAGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAAGTCTTTTAGTCGTCTTGTTGTCAAAGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E438333" ref_strand="+" ref_description="SGN-E438333 [cSTA-7-O20]">
      <seq>cagaaatggcgaccactcagctaacagcatcgtctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaaggccgtatcttttacccctttgaagcacaacaacagcaggtcttttagtcgtctggttgtcaaggctgccaccaccgtagctcctaagtacactactcttaagcctttgggcgacagagtgttggtgaagattaagaccgcggaggagaaaactgttggtggtatcctacttccagtaacagcccagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaagatcaaagtggacattagtgtgaagactggtgcccaagtcatctactcaaagtacgcgggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104757" stop="106556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105056" g_stop="105234" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="359" r_length="180" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106130" g_stop="106256" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="486" r_length="127" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E438333" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105056" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGC</genome_strand>
        <mrna_strand>CAGAAATGGCGACCACTCAGCTAACAGCATCGTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGGCCGTATCTTTTACCCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTGGTTGTCAAGGCTGCCACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACTCTTAAGCCTTTGGGCGACAGAGTGTTGGTGAAGATTAAGACCGCGGAGGAGAAAACTGTTGGTGGTATCCTACTTCCAGTAACAGCCCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAGATCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCAAAGTACGCGGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E255045" ref_strand="+" ref_description="SGN-E255045 [cLEG-31-M23]">
      <seq>aaaaatggcgtccactcagcttacagcatcgtctatctctggcaatggttgggcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104757" stop="107010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105057" g_stop="105234" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="358" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="514" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106667" g_stop="106710" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="558" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E255045" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105057" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGAC</genome_strand>
        <mrna_strand>AAAAATGGCGTCCACTCAGCTTACAGCATCGTCTATCTCTGGCAATGGTTGGGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E235064" ref_strand="+" ref_description="SGN-E235064 [cLEL-6-A1]">
      <seq>aaaaatggcgtccatttatgctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgagggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaagtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104757" stop="106552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105057" g_stop="105234" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="360" r_length="181" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106130" g_stop="106252" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="483" r_length="123" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E235064" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105057" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCGTCCACTCA-GCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGA-GGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGAT</genome_strand>
        <mrna_strand>AAAAATGGCGTCCATTTATGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAAGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E257670" ref_strand="+" ref_description="SGN-E257670 [cLEG-39-M9]">
      <seq>aaaaatggcgtccactcagctaacagcatcctatatctctggcattggtcctgcatactttgaagggctcaggtccacttgcatcagaaagaccgtatcgactgctcctttggagcccaacaacgactcgtctatttattgcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggcggttgctgactgggagggtcattcatctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaagtggagtttgatggatcaaagcaccttattctgaaagaggatgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104757" stop="106518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105057" g_stop="105234" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.876"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.90"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="360" r_length="180" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106130" g_stop="106218" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="449" r_length="89" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E257670" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105057" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCT-TTTAGT-CGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATAT</genome_strand>
        <mrna_strand>AAAAATGGCGTCCACTCAGCTAACAGCATCCTATATCTCTGGCATTGGTCCTGCATACTTTGAAGGGCTCAGGTCCACTTGCATCAGAAAGACCGTATCGACTGCTCCTTTGGAGCCCAACAACGACTCGTCTATTTATTGCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGCGGTTGCTGACTGGGAGGGTCATTCATCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAAGTGGAGTTTGATGGATCAAAGCACCTTATTCTGAAAGAGGATGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E234584" ref_strand="+" ref_description="SGN-E234584 [cLEL-6-A1]">
      <seq>aaaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104757" stop="106305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105057" g_stop="105234" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106005" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="316" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E234584" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105057" e_stop="105234"/>
          <exon e_start="105868" e_stop="106005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAG</genome_strand>
        <mrna_strand>AAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E375484" ref_strand="+" ref_description="SGN-E375484 [TUS-34-L2]">
      <seq>aaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacagggaaccactttcagtatccccaggaaatacagttctctatttcaaatatgcccgcagtgaattcaaaggtgctgatggatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104758" stop="107266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105058" g_stop="105234" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="357" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="513" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="591" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106840" g_stop="106966" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="718" r_length="127" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E375484" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105058" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="106966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTG</genome_strand>
        <mrna_strand>AAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGGAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTTCAAATATGCCCGCAGTGAATTCAAAGGTGCTGATGGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E314514" ref_strand="+" ref_description="SGN-E314514 [cTOB-1-M1]">
      <seq>aaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgtcgggcctggtcctcttgatgaagaagggaacaggaaaccactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104758" stop="107193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105058" g_stop="105234" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="357" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="513" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="591" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106840" g_stop="106893" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="645" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E314514" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105058" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="106893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTT</genome_strand>
        <mrna_strand>AAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTCGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E253432" ref_strand="+" ref_description="SGN-E253432 [cLEG-24-P3]">
      <seq>aaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaagaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104758" stop="107012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105058" g_stop="105234" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="357" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="513" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106667" g_stop="106712" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="559" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E253432" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105058" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTG</genome_strand>
        <mrna_strand>AAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAAGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E252208" ref_strand="+" ref_description="SGN-E252208 [cLEG-8-L14]">
      <seq>aaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcggtcctttgaagggctcaggtccacttgcattgaaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaagtggagtttgatggatcaaagcaccttattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104758" stop="106990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105058" g_stop="105234" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="358" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="514" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106667" g_stop="106690" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="538" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E252208" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105058" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGC-ATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACC</genome_strand>
        <mrna_strand>AAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCGGTCCTTTGAAGGGCTCAGGTCCACTTGCATTGAAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAAGTGGAGTTTGATGGATCAAAGCACCTTATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E255289" ref_strand="+" ref_description="SGN-E255289 [cLEG-30-E7]">
      <seq>aaaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104758" stop="106570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105058" g_stop="105234" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="357" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106130" g_stop="106270" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="498" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E255289" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105058" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGAC</genome_strand>
        <mrna_strand>AAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E251294" ref_strand="+" ref_description="SGN-E251294 [cLEG-10-D20]">
      <seq>aaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104759" stop="107170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105059" g_stop="105234" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="356" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="512" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="590" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106840" g_stop="106870" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="621" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E251294" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105059" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="106870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATG</genome_strand>
        <mrna_strand>AAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E254101" ref_strand="+" ref_description="SGN-E254101 [cLEG-34-N7]">
      <seq>aaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104759" stop="107053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105059" g_stop="105234" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="356" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="512" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="590" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106840" g_stop="106848" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="599" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E254101" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105059" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="106848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCT</genome_strand>
        <mrna_strand>AAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E254222" ref_strand="+" ref_description="SGN-E254222 [cLEG-27-G11]">
      <seq>aaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104759" stop="106993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105059" g_stop="105234" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="356" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="512" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106667" g_stop="106693" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="539" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E254222" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105059" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCT</genome_strand>
        <mrna_strand>AAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E256712" ref_strand="+" ref_description="SGN-E256712 [cLEG-40-P19]">
      <seq>aaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104759" stop="106570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105059" g_stop="105234" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="356" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106130" g_stop="106270" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="497" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E256712" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105059" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGAC</genome_strand>
        <mrna_strand>AAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E253915" ref_strand="+" ref_description="SGN-E253915 [cLEG-28-O2]">
      <seq>aaatggcgtccactcagctaacagcatcctctatctctggcaatggttttgcatcctttgagagggctcaagtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcacgtcttttagacgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagcatcagttcagtcgaaacctaatggatgtgacgtggctgctgctggggagggtcattcacctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcatgaactgatgtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacacatgatgtcaacgatctgcagccattaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104759" stop="106569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105059" g_stop="105234" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="357" r_length="180" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106130" g_stop="106269" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="497" r_length="140" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E253915" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105059" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGA-AGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGA</genome_strand>
        <mrna_strand>AAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAGAGGGCTCAAGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCACGTCTTTTAGACGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGCATCAGTTCAGTCGAAACCTAATGGATGTGACGTGGCTGCTGCTGGGGAGGGTCATTCACCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCATGAACTGATGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACACATGATGTCAACGATCTGCAGCCATTAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E312057" ref_strand="+" ref_description="SGN-E312057 [cTOA-11-K21]">
      <seq>gcgtccactcatctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104764" stop="106581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105064" g_stop="105234" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="351" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106130" g_stop="106281" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="503" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E312057" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105064" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAAT</genome_strand>
        <mrna_strand>GCGTCCACTCATCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E704216" ref_strand="+" ref_description="SGN-E704216 [FA23CF12]">
      <seq>ctcagctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcagggtgtctgatgtaatggctgtgctatcttagtgggactattgagttattccgtgcccaaaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104771" stop="107347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105071" g_stop="105234" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="344" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="500" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="578" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106840" g_stop="107047" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="786" r_length="208" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E704216" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105071" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTC</genome_strand>
        <mrna_strand>CTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCCAAAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E702187" ref_strand="+" ref_description="SGN-E702187 [FA18AB09]">
      <seq>agctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcagggtgtctgatgtaatggctgtgctatcttagtgggactattgagttattccgtgccaaaaatttcagcagagatctaggaaggaggaagagctgcatcccactttcgagtgaggagtaatactctctgcaaattaatgatcaatatctcaggtgtagaatcnattttctgaactcatttctgntcttgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104774" stop="107473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105074" g_stop="105234" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="341" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="497" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="575" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106840" g_stop="107173" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="909" r_length="334" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E702187" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>909</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105074" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATT</genome_strand>
        <mrna_strand>AGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCCACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCNATTTTCTGAACTCATTTCTGNTCTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E252260" ref_strand="+" ref_description="SGN-E252260 [cLEG-12-I4]">
      <seq>agctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttantcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatntactcgaagtactcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaagatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104774" stop="107016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105074" g_stop="105234" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="341" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="497" r_length="156" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106667" g_stop="106716" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="547" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E252260" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105074" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGC</genome_strand>
        <mrna_strand>AGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTANTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATNTACTCGAAGTACTCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAAGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E252259" ref_strand="+" ref_description="SGN-E252259 [cLEG-12-I2]">
      <seq>agctaacagcatcctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104774" stop="107012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105074" g_stop="105234" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="341" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="497" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106667" g_stop="106712" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="543" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E252259" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105074" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTG</genome_strand>
        <mrna_strand>AGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E248808" ref_strand="+" ref_description="SGN-E248808 [cLEG-5-M18]">
      <seq>gctaacagcatactctatctctggcaatggttatgcatactttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacaacaggtcttttagtcatcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaacattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgacgcggagtttgatggatcaaagcacctcattctgaaagaggatgatattgctggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaatctgaagaaaaaaccgctggaggtttactgttgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104775" stop="107011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105075" g_stop="105234" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="340" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="496" r_length="156" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106667" g_stop="106711" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="541" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E248808" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105075" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACT</genome_strand>
        <mrna_strand>GCTAACAGCATACTCTATCTCTGGCAATGGTTATGCATACTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAACAGGTCTTTTAGTCATCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAACATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGACGCGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGCTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAATCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E399748" ref_strand="+" ref_description="SGN-E399748 [cSTC-2-C24]">
      <seq>cagcatcgtctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaaggccgtatcttttacccctttgaagcacaacaacagcaggtcttttagtcgtctggttgtcaaggacttgccaccaccgtagctcctaagtacactactcttaagcctttgggcgacagagtgttggtgaagattaagaccgcggaggagaaaactgttggtggtatcctacttccagtaacagcccagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaagatcaaagtggacattagtgtgaagactggtgcccaagtcatctactcaaagtacgcgggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgccgaagctgaagaaaaaactgctggaggcttactgttgactgaggcagccaaggagaagccttcaattggctcgattataaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104780" stop="107050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105080" g_stop="105234" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.85"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="337" r_length="180" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="493" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="571" r_length="78" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106840" g_stop="106849" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="581" r_length="10" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E399748" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E399748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105080" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="106849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGG-C-GGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTG</genome_strand>
        <mrna_strand>CAGCATCGTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGGCCGTATCTTTTACCCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTGGTTGTCAAGGACTTGCCACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACTCTTAAGCCTTTGGGCGACAGAGTGTTGGTGAAGATTAAGACCGCGGAGGAGAAAACTGTTGGTGGTATCCTACTTCCAGTAACAGCCCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAGATCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCAAAGTACGCGGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGAAGCTGAAGAAAAAACTGCTGGAGGCTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCTCG...............................................................................................ATTATAACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E314367" ref_strand="+" ref_description="SGN-E314367 [cTOA-21-G1]">
      <seq>ctctatctctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaccgctggaggtttactgttgactgangcagccaaggagaagcccttcattggcacgattatagctgntgggcctggtcctcttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104787" stop="107169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105087" g_stop="105234" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="328" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="484" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="561" r_length="77" r_score="0.936"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106840" g_stop="106869" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="591" r_length="30" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E314367" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105087" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="106869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGAT</genome_strand>
        <mrna_strand>CTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAG-AAAAACCGCTGGAGGTTTACTGTTGACTGANGCAGCCAAGGAGAAGCCCTTCATTGGCACG...............................................................................................ATTATAGCTGNTGGGCCTGGTCCTCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E717317" ref_strand="+" ref_description="SGN-E717317 [FB19DD08]">
      <seq>ctggcaatggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcagggtgtctgatgtaatggctgtgctatcttagtgggactattgagttattccgtgccaaaaatttcaccagagatctaggaaggaggaagagctgcatccaactttcgagtgaagagtaatactctcctgcaattaatgatcaatatctcaggtgtagaatcaattttctgaactcatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104795" stop="107462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105095" g_stop="105234" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="320" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="476" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="554" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106840" g_stop="107162" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="877" r_length="323" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E717317" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105095" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTC</genome_strand>
        <mrna_strand>CTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCACCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAAGAGTAATACTCTCCTGCAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E251537" ref_strand="+" ref_description="SGN-E251537 [cLEG-9-A14]">
      <seq>aatggttttgcatcctttgaagggctcaggtccactggcattgtaaagaccgtatgttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104800" stop="106213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105100" g_stop="105234" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="105913" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="181" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E251537" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>181</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105100" e_stop="105234"/>
          <exon e_start="105868" e_stop="105913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTA</genome_strand>
        <mrna_strand>AATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTGGCATTGTAAAGACCGTATGTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E244212" ref_strand="+" ref_description="SGN-E244212 [cLEF-37-A13]">
      <seq>atggttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgcatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104801" stop="106250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105101" g_stop="105234" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="105950" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="217" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E244212" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>217</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105101" e_stop="105234"/>
          <exon e_start="105868" e_stop="105950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACT</genome_strand>
        <mrna_strand>ATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGCATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E252005" ref_strand="+" ref_description="SGN-E252005 [cLEG-8-M5]">
      <seq>ttttgcatcctttgaagggctcaggtccacttgcattgtaaagaccgtatcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104805" stop="107169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105105" g_stop="105234" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="310" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="466" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="544" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106840" g_stop="106869" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="574" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E252005" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105105" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="106869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGAT</genome_strand>
        <mrna_strand>TTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E485724" ref_strand="+" ref_description="SGN-E485724 [cSTE-19-A18]">
      <seq>ctttgaagggctcaggtccacttgcattgtaaaggccgtatcttttgcccctttgaagcacaacaacagcaggtcttttagtcgtctggttgtcaaggctgccaccaccgtagctcctaagtacactactcttaagcctttgggtgacagagtgttggtgaagattaagatcgcggaggagaagactgttggtggtatcctacttccagtaacagcccagtcgaaacctaacggaggtgaggtggttgctgttggggagggtcattcagctggcaagatcaaagtggacattagtgtgaagactggtgcccaagtcatctactcaaagtacgcgggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgccgaagctgaagaaaaaactgctggaggcttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgtcgggcctggtcctattgatgaagaagggaacaggaaaacactttcagtatccccagaaaatacngntctctactccaaatatgcaggcagtgaattcaaaggggctgatggttctgattacattacactcagggtgtctgatgtaatggctgtgctatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104814" stop="107311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105114" g_stop="105234" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="301" r_length="180" r_score="0.933"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="457" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="535" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106840" g_stop="107011" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="707" r_length="172" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E485724" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105114" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTT</genome_strand>
        <mrna_strand>CTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGGCCGTATCTTTTGCCCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTGGTTGTCAAGGCTGCCACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACTCTTAAGCCTTTGGGTGACAGAGTGTTGGTGAAGATTAAGATCGCGGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTAACAGCCCAGTCGAAACCTAACGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAGATCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCAAAGTACGCGGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGAAGCTGAAGAAAAAACTGCTGGAGGCTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTCGGGCCTGGTCCTATTGATGAAGAAGGGAACAGGAAAACACTTTCAGTATCCCCAGAAAATACNGNTCTCTACTCCAAATATGCAGGCAGTGAATTCAAAGGGGCTGATGGTTCTGATTACATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E734283" ref_strand="+" ref_description="SGN-E734283 [LB12BA10]">
      <seq>atcttttgctcctttgaagcacaacaacagcaggtcttttagtcgtcttgttgtcaaggcggctaccaccgtagctcctaagtacactacacttaagcctttgggcgacagagtcttggtgaagattaagactgcagaggagaagactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcagggtgtctgatgtaatggctgtgctatcttagtgggactattgagttattccgtgccaaaaatttcagcagagatctaggaaggaggaagagctgcatcccactttcgagtgaggagtaatactctctgcaaattaatgatcaatatctcaggtgtagaatcaattttctgaactcatttctgttcttgatttgaggaaatagcctttggggaattttgtatgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104853" stop="107506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105153" g_stop="105234" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="262" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="418" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="496" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106840" g_stop="107206" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="864" r_length="368" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E734283" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105153" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTT-GGGAATTTTGTATGTCA</genome_strand>
        <mrna_strand>ATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCCACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAAATAGCCTTTGGGGAATTTTGTATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E403869" ref_strand="+" ref_description="SGN-E403869 [PPC-12-A19]">
      <seq>gcagcaggtcttttagtcgtctggttgtcaaggctgccaccaccgtagctcctaagtacacaactcttaagcctttgggcgacagagtgttggtgaagattaagaccacagaggagaagactgttggtggtatcctacttccagtaacagcccagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaagatcaaagtggacattagtgtgaagactggtgcccaagtcatctactcaaagtacgcgggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgccgaagctgaagaaaaaaccgctggaggcttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgtcggacctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctactccaaatatgcaggcagtgaattcaaaggggctgatggttctgattacattacactcagggtgtctgatgtaatggctgtgctatcttagtggggctattgagttattccatgcccaaattttcagcagagatctanggaagaggaagctgcatccaactttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104880" stop="107390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105179" g_stop="105234" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="236" r_length="180" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="392" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="470" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106840" g_stop="107090" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="719" r_length="249" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E403869" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105179" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGA</genome_strand>
        <mrna_strand>GCAGCAGGTCTTTTAGTCGTCTGGTTGTCAAGGCTGCCACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACAACTCTTAAGCCTTTGGGCGACAGAGTGTTGGTGAAGATTAAGACCACAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTAACAGCCCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAGATCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCAAAGTACGCGGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGAAGCTGAAGAAAAAACCGCTGGAGGCTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTCGGACCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTACTCCAAATATGCAGGCAGTGAATTCAAAGGGGCTGATGGTTCTGATTACATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGGCTATTGAGTTATTCCATGCCCAAATTTTCAGCAGAGATCTANGGAAGAGG-A-AGCTGCATCCAACTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E558968" ref_strand="+" ref_description="SGN-E558968 [18391]">
      <seq>gtccttttagtcgtctggttgtcaaggctgccaccaccgtagctcctaagtacactactcttaagcctttgggcgacagagtgttggtgaagattaagaccgcggaggagaaaactgttggtggtatcctacttccagtaacagcccagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaagatcaaagtggacattagtgtgaagactggtgcccaagtcatctactcaaagtacgcgggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgccgaagctgaagaaaaaactgctggaggcttactgttgactgaggcagccaaggagaagccttcaattggctcgattatagccgtcgggcctggtcctattgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctactccaaatatgcaggcagtgaattcaaaggggctgatggttctgatttacttcacactcaggggtgtctgatgtaatggctgtgctatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104886" stop="107310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105185" g_stop="105234" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.90"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="230" r_length="180" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="386" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="464" r_length="78" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106840" g_stop="107010" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="637" r_length="173" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E558968" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105185" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGA-TTATATTACACTCA-GGGTGTCTGATGTAATGGCTGTGCTATCT</genome_strand>
        <mrna_strand>GTCCTTTTAGTCGTCTGGTTGTCAAGGCTGCCACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTACTCTTAAGCCTTTGGGCGACAGAGTGTTGGTGAAGATTAAGACCGCGGAGGAGAAAACTGTTGGTGGTATCCTACTTCCAGTAACAGCCCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAGATCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCAAAGTACGCGGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGAAGCTGAAGAAAAAACTGCTGGAGGCTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCTCG...............................................................................................ATTATAGCCGTCGGGCCTGGTCCTATTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTACTCCAAATATGCAGGCAGTGAATTCAAAGGGGCTGATGGTTCTGATTTACTTCACACTCAGGGGTGTCTGATGTAATGGCTGTGCTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E476458" ref_strand="+" ref_description="SGN-E476458 [cSTB-44-L2]">
      <seq>gtcttttagtcgtctggttgtcaaggctgccaccaccgtagctcctaagtacacaactcttaagcctttgggcgacagagtgttggtgaagattaagaccacagaggagaagactgttggtggtatcctacttccagtaacagcccagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaagatcaaagtggacattagtgtgaagactggtgcccaagtcatctactcaaagtacgcgggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="104886" stop="106575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105186" g_stop="105234" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="229" r_length="180" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106130" g_stop="106275" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="375" r_length="146" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E476458" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105186" e_stop="105234"/>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAGGTATCTAAATTTCCTATTGTTTTTGAAATCACTGCTTTCATTTCCCCTATTGGTTGCTTTACTGATTTGTCTTGGTTGTGTTAATTTGAATGCTTTTCGGGTTCTAAATCTAGTACTATTACAGAATGTTGTTTGCTTGTCAACTATGTGTCGAGACAAATTGTTGGGGTCGGCTAAATTTTTGTTTTTTTCATTTGAAGATTAAGATAAGATAAGAAAGGTCAAGTCTTGGGGTCGCTTTTTTTTGGAAGAGTTGGCTGAAACATAAAACTTCAACCATAATTTGATTGCTTCTCTGCCTATTCAAATGTGTGATAAAGTTTGTAATATGGGTTTGCTGGTTATATGGTTTCAATGAACAAAGATGAGGGGGTGGATGATAGCTCATTCTGGTGTGTGTGTGTGGATCTGTCTGGTTAATAGGGGTCTTCTTGAGTGAAGAATGCTTAAAATCCAACTATGGTATCATTGAGCATTAGGCTCCATTCGCTTTTACAACTAATTGATTTTTTGTTGTGTTATATACAAGCCTGCACCTAATGGGTTTCAACTTTTCTGCAACTTTAAAGTATCATATTGTCAAATATACATTACTATGTGGGGCCATTTGTTAGATGGTGTTGTTCTTTGCAGTACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGT</genome_strand>
        <mrna_strand>GTCTTTTAGTCGTCTGGTTGTCAAGGCTGCCACCACCGTAGCTCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACAACTCTTAAGCCTTTGGGCGACAGAGTGTTGGTGAAGATTAAGACCACAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTAACAGCCCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAGATCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCAAAGTACGCGGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E343787" ref_strand="+" ref_description="SGN-E343787 [cTOF-12-G7]">
      <seq>accgtagctcctagtacactacacttaagcctttgggcgacagagtcttggtgaagactaagactgcagaggagatgaactgttggtggtatcctacttccagtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaaggatgatattgttggtattcttgagaacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="105563" stop="107280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105868" g_stop="106047" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="195" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="353" r_length="158" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="431" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106840" g_stop="106980" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="572" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E343787" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105868" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="106980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAG-ACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAG-AGGATGATATTGTTGGTATTCTTGAG-ACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTC</genome_strand>
        <mrna_strand>TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGACTAAGACTGCAGAGGAGATGAACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAAGGATGATATTGTTGGTATTCTTGAGAACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E465943" ref_strand="+" ref_description="SGN-E465943 [cPRO-22-P19]">
      <seq>gttggtggtatcctacttccagtaacagcccagtcgaaacctaacggaggtgaggtggttgctgttggggagggtcattcagctggcaagatcaaagtggacattagtgtgaagactggtgcccaagtcatctactcaaagtacgcgggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgccgaagctgaagaaaaaactgctggaggcttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgtcgggcctggtcctattgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacggttctctactccaaatatgcaggcagtgaattcaaaggggctgatggttctgattacattacactcagggtgtctgatgtaatggctgtgctatcttagtggggctattgagctattccatgccaaaattttcagcagagatctaggaaggaggaagctgcattcaactttcgagtgaggagtaatactctctgcaaattaatgactaatatcaaagtgtagaataaattttctgaatgcatttctgttcttgatttgaggaattaccctttgggaattttgttgttaaaagtgattgaaaactgcagattatgaaagattagcaataatatttgcataattcatatagatttagaatgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="105634" stop="107564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105934" g_stop="106047" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="270" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="348" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106840" g_stop="107263" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="770" r_length="422" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="784" polyA_stop="799"/>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E465943" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105934" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAA--GATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCACAT</genome_strand>
        <mrna_strand>GTTGGTGGTATCCTACTTCCAGTAACAGCCCAGTCGAAACCTAACGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAGATCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCAAAGTACGCGGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGAAGCTGAAGAAAAAACTGCTGGAGGCTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTCGGGCCTGGTCCTATTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACGGTTCTCTACTCCAAATATGCAGGCAGTGAATTCAAAGGGGCTGATGGTTCTGATTACATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGGCTATTGAGCTATTCCATGCCAAAATTTTCAGCAGAGATCTAGGAAGGAGG-A-AGCTGCATTCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGACTAATATC-AAAGTGTAGAATAAATTTTCTGAATGCATTTCTGTTCTTGATTTGAGGAATTACCCTTTGGGAATTTTGT-TGTTAAAAGTGATTGAAAACTGCAGATTATGAAAGATTAGCAATAATATTTGCATAATTCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E545994" ref_strand="-" ref_description="SGN-E545994 [TUS-69-C3]">
      <seq>tccagtaacagcccagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaatcaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcgggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgccgaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgtcgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcagggtgtctgatgtaatggctgtgctatcttagtggggctattgagttattccgtgccaaaattttcagcagagatctaggaaggaggaagctgcatccaactttcgagtgaggagtaatactctctgcaaattaatgattaatatctcaagtgtagaatcaattttctgaactcatttctgttcttgatttgaggaattagcctttgggaattttgtatgttaaaagattgaaaactgcagattatgagagattagccaataatatttgcataattcacttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="105651" stop="107564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105951" g_stop="106047" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="253" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="331" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106840" g_stop="107261" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="752" r_length="421" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="755" polyA_stop="784"/>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E545994" ref_strand="-">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545994" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="105951" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGATTAG-CAATAATATTTGCATAATTCAC</genome_strand>
        <mrna_strand>TCCAGTAACAGCCCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAATCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCGGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTCGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGGCTATTGAGTTATTCCGTGCCAAAATTTTCAGCAGAGATCTAGGAAGGAGG-A-AGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATTAATATCTCAAGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTTAAAAGATTGAAAACTGCAGATTATGAGAGATTAGCCAATAATATTTGCATAATTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E375483" ref_strand="-" ref_description="SGN-E375483 [TUS-34-L2]">
      <seq>gtatcagttcagtcgaaacctaatggaggtgaggtggttgctgttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcagggtgtctgatgtaatggctgtgctatcttagtgggactattgagttattccgtgccaaaaatttcagcagagatctaggaaggaggaagagctgcatccaactttcgagtgaggagtaatactctctgcaaattaatgatcaatatctcaggtgtagaatcaattttctgaactcatttctgttcttgatttgaggaattagcctttgggaattttgtatgtcaaaagattgaaaactgcagactatgagagattagcaataatatttgcataattcacataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="105655" stop="107564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105955" g_stop="106047" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="249" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="327" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106840" g_stop="107263" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="751" r_length="424" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="752" polyA_stop="761"/>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E375483" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375483" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="105955" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCACAT</genome_strand>
        <mrna_strand>GTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E323742" ref_strand="+" ref_description="SGN-E323742 [cTOC-5-B11]">
      <seq>tcgaaacctaatggaggtgaggtggttgctggtggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="105667" stop="107235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105967" g_stop="106047" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="237" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="315" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106840" g_stop="106935" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="411" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E323742" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105967" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="106935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCC</genome_strand>
        <mrna_strand>TCGAAACCTAATGGAGGTGAGGTGGTTGCTGGTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E282093" ref_strand="+" ref_description="SGN-E282093 [cLES-4-C5]">
      <seq>ttggggagggtcattcagctggcaaaaccaaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="105698" stop="107048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105998" g_stop="106047" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="206" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="284" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E282093" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105998" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG</genome_strand>
        <mrna_strand>TTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E293741" ref_strand="+" ref_description="SGN-E293741 [cLET-21-C11]">
      <seq>agggtcattcagctggtaaaacctaagtggacattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcacaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcagggtgtctgatgtaatggctgtgctatcttactgggactattgagatattccgtgccaaaaatttaagcagagatctaggaaggaggaagagctgcatccaaatttcgagtgaggagtaatactttttgcaaattaatgatcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="105704" stop="107426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106004" g_stop="106047" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.95"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="200" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="278" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106840" g_stop="107126" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="565" r_length="287" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E293741" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106004" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAAT</genome_strand>
        <mrna_strand>AGGGTCATTCAGCTGGTAAAACCTAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCACAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTACTGGGACTATTGAGATATTCCGTGCCAAAAATTTAAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAAATTTCGAGTGAGGAGTAATACTTTTTGCAAATTAATGATCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E276335" ref_strand="+" ref_description="SGN-E276335 [cLEN-21-H12]">
      <seq>aaaaccaaagtggacattagtgtgaatactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcagggtgtctgatgtaatggctgtgctatcttagtgggactattgagttattccgtgccaaaaatttcagcagagatctaggaaggaggaagagctgcatccaactttcgagtgaggagtaatactctctgcaaattaatgatcaatatctcaggtgtagaatcaattttctgaactcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="105721" stop="107460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106021" g_stop="106047" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="183" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="261" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106840" g_stop="107160" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="582" r_length="321" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E276335" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106021" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATT</genome_strand>
        <mrna_strand>AAAACCAAAGTGGACATTAGTGTGAAT..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E414633" ref_strand="-" ref_description="SGN-E414633 [STM-19-J14]">
      <seq>tcaaagtggacattagtgtgaagactggtgcccaagtcatctactcaaagtacgcgggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgccgaagctgaagaaaaaactgctggaggcttactgttgactgaggcagccaaggagaagccttcaattggctcgattatagccgtcgggcctggtcctattgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctactccaaatatgcaggcagtgaattcaaaggggctgatggttctgattacatcacactcagggtgtctgatgtaatggctgtgctatcttagtggggctattgagctattccatgccaaaattttcagcagagatctaggaaggaggaagctgcattcaactttcgagtgaggagtaaaactctctgcaaatttatgactaatatcgaagtgtagaatcaattttctgaatgcatttctgttcttgatttgaggaattaccctttgggaattttgtatgttaaaagtgattgaaaactgcagattatgaaagattagcaataatatttgcataaaaaaaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="105726" stop="107556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106025" g_stop="106047" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="179" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="257" r_length="78" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106840" g_stop="107255" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="672" r_length="415" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E414633" ref_strand="-">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414633" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="106025" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAGTGGACATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAA--GATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATA</genome_strand>
        <mrna_strand>TCAAAGTGGACATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCAAAGTACGCGGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGAAGCTGAAGAAAAAACTGCTGGAGGCTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCTCG...............................................................................................ATTATAGCCGTCGGGCCTGGTCCTATTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTACTCCAAATATGCAGGCAGTGAATTCAAAGGGGCTGATGGTTCTGATTACATCACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGGCTATTGAGCTATTCCATGCCAAAATTTTCAGCAGAGATCTAGGAAGGAGG-A-AGCTGCATTCAACTTTCGAGTGAGGAGTAAAACTCTCTGCAAATTTATGACTAATATC-GAAGTGTAGAATCAATTTTCTGAATGCATTTCTGTTCTTGATTTGAGGAATTACCCTTTGGGAATTTTGTATGTTAAAAGTGATTGAAAACTGCAGATTATGAAAGATTAGCAATAATATTTGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E585620" ref_strand="-" ref_description="SGN-E585620 [68082]">
      <seq>aagtggacattagtgttaaagaactggtgcccaagtcatctactcaaacgtaccgcgggaactgaggtgggattttgatggatcaaaagcacctcattctgaaaagaggatgatatttntggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgccgaagctgaagaaaaaaccgctggaggcttactgttgactcgaggcagccaaggagaagccttcaattggcacgattatagctgtcggacctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctactccaaatatgcaggcagtgaattcaaaggggctgatggttctgattacattacactcagggtgtctgatgtaatggctgtgctatcttagtggggctattgagttattccatgccaaaattttcagcagagatctaggaaggaggaagctgcatccaactttctagtgaggagtaatactctctgcaaattaatgactaatatcaaagtgtagaatcaattttctgaatgcatttctgttcttgatttgaggaattaccctttgggaattttgtatgttaaaagtgattgaaaactgcagattatgaaagattagcaataatatttgcacaattcatataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="105728" stop="107564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106028" g_stop="106047" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.850"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="183" r_length="162" r_score="0.891"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="262" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106840" g_stop="107263" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="685" r_length="423" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="686" polyA_stop="726"/>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E585620" ref_strand="-">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585620" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="106028" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGGACATTAGTG-TGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGA-CTGGTGCCCAAGTCATCTACTCGAA-GTA-CGCAGGAACTGAGGT-GGAGTTTGATGGATC-AAAGCACCTCATTCTG-AAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACT-GAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAA--GATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCACAT</genome_strand>
        <mrna_strand>AAGTGGACATTAGTGTTAAAG..................................................................................AACTGGTGCCCAAGTCATCTACTCAAACGTACCGCGGGAACTGAGGTGGGATTTTGATGGATCAAAAGCACCTCATTCTGAAAAGAGGATGATATTTNTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGAAGCTGAAGAAAAAACCGCTGGAGGCTTACTGTTGACTCGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTCGGACCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTACTCCAAATATGCAGGCAGTGAATTCAAAGGGGCTGATGGTTCTGATTACATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGGCTATTGAGTTATTCCATGCCAAAATTTTCAGCAGAGATCTAGGAAGGAGG-A-AGCTGCATCCAACTTTCTAGTGAGGAGTAATACTCTCTGCAAATTAATGACTAATATC-AAAGTGTAGAATCAATTTTCTGAATGCATTTCTGTTCTTGATTTGAGGAATTACCCTTTGGGAATTTTGTATGTTAAAAGTGATTGAAAACTGCAGATTATGAAAGATTAGCAATAATATTTGCACAATTCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E265752" ref_strand="-" ref_description="SGN-E265752 [cLEI-11-M14]">
      <seq>cattagtgtgaagactggtgcccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcagggtgtctgatgtaatggctgtgctatcttagtgggactattgagttattccgtgccaaaaatttcagcagagatctaggaaggaggaagagctgcatccaactttcgagtgaggagtaatactctctgcaaattaatgatcaatatctcaggtgtagaatcaattttctgaactcatttctgttcttgatttgaggaattagcctttgggaattttgtatgtcaaaagattgaaaactgcagactatgagagattagcaataatatttgcataattcacataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="105817" stop="107564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106035" g_stop="106047" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106130" g_stop="106285" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="169" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="247" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106840" g_stop="107263" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="671" r_length="424" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="672" polyA_stop="687"/>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E265752" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265752" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="106035" e_stop="106047"/>
          <exon e_start="106130" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTAGTGTGAAGGTAATACTATATATTCAAATAATATAGTCGAGCTGGGATAATTAGTGGATAATCAAGTTGACTGAAACTATCTTTTGTATAGACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCACAT</genome_strand>
        <mrna_strand>CATTAGTGTGAAG..................................................................................ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E613388" ref_strand="+" ref_description="SGN-E613388 [63161]">
      <seq>ggcacgagggtcatctactcaaagtacgcgggaactgaggtggagttgatggatcaaagcacctcattctgaaaagtgatatgtggtatcgaaagatgatgtcaggatctgcagccattaatgacagagtcctaatcaaggttgccgaagctgaagaaaaaaccgtggaggcttactgttgactgaggcaccaaggagaagccttcaattggcacgattatagctgtcggacctggtcctcttgatgaagaaggaacaggaaacactttcagtatccccaggaaatacagttctctactccaaatatgcaggcagtgaattcaaaggggctgatggttctgattacattacactcagggtgtctgatgtaatggctgtgctatcttagtggggctattgagttattccatgccaaaattttcagcagagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="105842" stop="107357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106133" g_stop="106285" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.863"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="0.94"/>
            <acceptor a_prob="0.926" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="216" r_length="76" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106840" g_stop="107057" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="432" r_length="216" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E613388" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.039" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106133" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATC</genome_strand>
        <mrna_strand>GGCACGAGGGTCATCTACTCAAAGTACGCGGGAACTGAGGTGGAG-TTGATGGATCAAAGCACCTCATTCTGAAA-A-G-TGATA-TG-TGGTA-TC--GA-A-AGATGATGTC-AGGATCTGCAGCCATT-AATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGAAGCTGAAGAAAAAACCG-TGGAGGCTTACTGTTGACTGAGGCA-CCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTCGGACCTGGTCCTCTTGATGAAGAA-GGAACAGGAAA-CACTTTCAGTATCCCCAGGAAATACAGTTCTCTACTCCAAATATGCAGGCAGTGAATTCAAAGGGGCTGATGGTTCTGATTACATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGGCTATTGAGTTATTCCATGCCAAAATTTTCAGCAGAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E322871" ref_strand="+" ref_description="SGN-E322871 [cTOB-30-J4]">
      <seq>ccaagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcagggtgtctgatgtaatggctgtgctatcttagtgggactattgagttattccgtgccaaaaatttcagcagagatctaggaaggaggaagagctgcatccaactttcgagtgaggagtaatactctctgcaaattaatgatcaatatctcaggtgtagaatcaattttctgaactcatttctgttcttgatttgaggaattagcctttgggaattttgtatgtcaaaagattgaaactgcagactatgagagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="105838" stop="107536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106138" g_stop="106285" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="226" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106840" g_stop="107236" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="622" r_length="396" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E322871" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106138" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGAT</genome_strand>
        <mrna_strand>CCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTG-AAACTGCAGACTATGAGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E370280" ref_strand="-" ref_description="SGN-E370280 [TUS-28-C9]">
      <seq>caagtcatctactcgaagtacgcaggaactgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctttattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcagggtgtttgatgtaatggctgtgctatcttagtgggactattgagttattccgtgccaaaaatttcagcaaagatttaggaaggaggaagagctgcatccaactttcgagtgaggagtaatactctctgcaaattaatgatcaatatttcaggtgtagaatcaattttttgaactcatttctgttcttgatttgaggaattagcctttgggaattttgtatgtcaaaagattgaaaactgcagactatgagagattagcaataatatttgcataattcccattaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="105839" stop="107563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106139" g_stop="106285" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="225" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106840" g_stop="107263" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="649" r_length="424" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="651" polyA_stop="678"/>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E370280" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370280" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="106139" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCACAT</genome_strand>
        <mrna_strand>CAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTTTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTTTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAAAGATTTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATTTCAGGTGTAGAATCAATTTTTTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E463988" ref_strand="-" ref_description="SGN-E463988 [cPRO-16-H19]">
      <seq>tcaaagtacgcgggaactgagtgggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttgtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgccgaagctgaagaaaaaactgctggaggcttactgttgactgaggcagccaaggagaagccttcaattggctcgattatagccgtcgggcctggtcctattgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctactccaaatatgcaggcagtgaattcaaaggggctgatggttctgattacatcacactcagggcgtctgatgtaatggctgtgctatcttagtggggctattgagctattccatgccaaaattttcagcagagatctaggaaggaggaagctgcattcaactttcgagtgaggagtaaaactctctgcaaatttatgactaatatcgaagtgtagaatcaattttctgaatgcatttctgttcttgatttgaggaattaccctttgggaattttgtatgttaaaagtgattgaaaactgcagattatgaaagattagcaataatatttgcataattcatataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="105851" stop="107564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106151" g_stop="106285" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="212" r_length="78" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106840" g_stop="107269" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="641" r_length="429" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E463988" ref_strand="-">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463988" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="106151" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAA--GATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCACATATTGGA</genome_strand>
        <mrna_strand>TCAAAGTACGCGGGAACTGAGTGGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTT-GTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGAAGCTGAAGAAAAAACTGCTGGAGGCTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCTCG...............................................................................................ATTATAGCCGTCGGGCCTGGTCCTATTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTACTCCAAATATGCAGGCAGTGAATTCAAAGGGGCTGATGGTTCTGATTACATCACACTCAGGGCGTCTGATGTAATGGCTGTGCTATCTTAGTGGGGCTATTGAGCTATTCCATGCCAAAATTTTCAGCAGAGATCTAGGAAGGAGG-A-AGCTGCATTCAACTTTCGAGTGAGGAGTAAAACTCTCTGCAAATTTATGACTAATATC-GAAGTGTAGAATCAATTTTCTGAATGCATTTCTGTTCTTGATTTGAGGAATTACCCTTTGGGAATTTTGTATGTTAAAAGTGATTGAAAACTGCAGATTATGAAAGATTAGCAATAATATTTGCATAATTCATATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E732047" ref_strand="+" ref_description="SGN-E732047 [LB01AE09]">
      <seq>aggctgaggtggagtttgatggatcaaagcacctcattctgaaagaggatgatattgttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcagggtgtctgatgtaatggctgtgctatcttagtgggactattgagttattccgtgccaaaaatttcagcagagatctaggaaggaggaagagctgcatccaactttcgagtgaggagtaatactctctgcaaattaatgatcaatatctcaggtgtagaatcaattttctgaactcatttctgttcttgatttgaggaattagcctttgggaattttgtatgtcaaaagattgaaaactgcagactatgagagattagcaataatatttgcataattcacatattggattgtgttcaagctgatgtttgtcatttttgggatcaagttgtatatccctagtcgctagtggatcaaagaggtagcttatttcgggatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="105867" stop="107659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106162" g_stop="106285" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="200" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106840" g_stop="107359" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="720" r_length="520" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E732047" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106162" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCACATATTGGATTGTGTTCAAGCTGATGTTTGTCATTTTTGGGATCAAGTTGTATATCCCTAGTCGCTAGTGGATCAAAGAGGTAGCTTATTTCGGGATCG</genome_strand>
        <mrna_strand>AGG--CTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCACATATTGGATTGTGTTCAAGCTGATGTTTGTCATTTTTGGGATCAAGTTGTATATCCCTAGTCGCTAGTGGATCAAAGAGGTAGCTTATTTCGGGATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E537871" ref_strand="-" ref_description="SGN-E537871 [TUS-56-L5]">
      <seq>gatgatattgttggtttcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaagaggtgctgatggatctgattatattacactcagggtgtctgatgtaatggctgtgctatcttagtgggactattgagttattccgtgccaaaaatttcagcagagatctaggaaggaggaagagctgcatccaactttcgagtgaggagtaatactctctgcaaattaatgatcaatatctcaggtgtagaatcaattttctgaactcatttctgttcttgatttgaggaattagcctttgggaattttgtatgtcaaaagattgaaaactgcagactatgagagattagcaataatatttgcataattcacataaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="105911" stop="107564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106211" g_stop="106285" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="152" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106840" g_stop="107263" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="577" r_length="425" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E537871" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537871" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="106211" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAA-AGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCACAT</genome_strand>
        <mrna_strand>GATGATATTGTTGGT-TTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAGAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E268964" ref_strand="-" ref_description="SGN-E268964 [cLEI-16-I19]">
      <seq>ttggtattcttgagacagatgatgtcaaggatctgcagccattaaatgacagagtcctaatcaaggttgcagaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcagggtgtctgatgtaatggctgtgctatcttagtgggactattgagttattccgtgccaaaaatttcagcagagatctaggaaggaggaagagctgcatccaactttcgagtgaggagtaatactctctgcaaattaatgatcaatatctcaggtgtagaatcaattttctgaactcatttctgttcttgatttgaggaattagcctttgggaattttgtatgtcaaaagattgaaaactgcagactatgagagattagcaataatatttgcataattcacgataaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="105921" stop="107564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106221" g_stop="106285" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="143" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106840" g_stop="107261" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="565" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="567" polyA_stop="591"/>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E268964" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268964" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="106221" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCAC</genome_strand>
        <mrna_strand>TTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E546001" ref_strand="-" ref_description="SGN-E546001 [TUS-69-C7]">
      <seq>agccattaaatgacagagtcctaatcaaggttgccgaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcccgattatagctgtcgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcagggtgtctgatgtaatggctgtgctatcttagtggggctattgagttattccgtgccaaaattttcagcagagatctaggaaggaggaagctgcatccaactttcgagtgaggagtaatactctctgcaaattaatgattaatatctcaagtgtagaatcaattttctgaactcatttctgttcttgatttgaggaattaccctttgggaattttgtatgttaaaagattgaaaactgcagattatgagagattagcaataatatttgcataattcccttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="105957" stop="107564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106257" g_stop="106285" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381">
            <donor d_prob="0.901" d_score="0.00"/>
            <acceptor a_prob="0.926" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="107" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106840" g_stop="107261" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="527" r_length="420" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="530" polyA_stop="544"/>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E546001" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546001" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="106257" e_stop="106285"/>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCATTAAATGACAGAGTCCTAATCAAGGTTGGTCATTTGCGTCCTCCCGTCCTTGTTTGCAATGTGTCTAATGTTTCTATAGTCAGCTGCTTGTCTATTGCGGCTTTAATTTTCCCTTTTTTTTTTTGTTCTAAAGAAGCTGGTTATATGAGGAAATTGGTTTAAGTTAGCTGGCATCGTATCCCTATCTTTAGTGCCCGTCTCCTGCATTCTATGTTGCTTGTACTCTTCAAAAATGTCATTGGGTGCATATTGGTCCTTCAAAACTGGTGCCTTTTTGGAGGATCCAACACGGCTCTGGCAACATTTTGGGGGGACCAAGCAACTTAGCCTGCAATTGTTTTAAACATTTGCAGTTCCTGCAAGGTCTTTAATTGGCTGTCAACCGGTGGTTGCATTTCCTCTCAGGTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCAC</genome_strand>
        <mrna_strand>AGCCATTAAATGACAGAGTCCTAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCCCG...............................................................................................ATTATAGCTGTCGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGGCTATTGAGTTATTCCGTGCCAAAATTTTCAGCAGAGATCTAGGAAGGAGG-A-AGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATTAATATCTCAAGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTACCCTTTGGGAATTTTGTATGTTAAAAGATTGAAAACTGCAGATTATGAGAGATTAGCAATAATATTTGCATAATTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E620923" ref_strand="+" ref_description="SGN-E620923 [71629]">
      <seq>ttgaactaatcaaggttgccgaagctgaagaaaaaactgctggaggcttactgttgactgaggcagccaaggagaagccttcaattggctcgattatagccgtcgggcctggtcctattgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctactccaaatatgcaggcagtgaattcaaaggggctgatggttctgattacatcacactcagggtgtctgatgtaatggctgtgctatcttagtggggctattgagctattccatgccaaaattttcagcagagatctaggaaggaggaagctgcattcaactttcgagtgaggagtaaaactctctgcaaatttatgactaatatcgaagtgtagaatcaattttctgaatgcatttctgttcttgatttgaggaattaccctttgggaattttgtatgttaaaagtgattgaaaactgcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="106363" stop="107525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106667" g_stop="106744" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="92" r_length="78" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106840" g_stop="107225" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="477" r_length="385" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E620923" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106667" e_stop="106744"/>
          <exon e_start="106840" e_stop="107225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAA--GATTGAAAACTGCAGA</genome_strand>
        <mrna_strand>GTTGCCGAAGCTGAAGAAAAAACTGCTGGAGGCTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCTCG...............................................................................................ATTATAGCCGTCGGGCCTGGTCCTATTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTACTCCAAATATGCAGGCAGTGAATTCAAAGGGGCTGATGGTTCTGATTACATCACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGGCTATTGAGCTATTCCATGCCAAAATTTTCAGCAGAGATCTAGGAAGGAGG-A-AGCTGCATTCAACTTTCGAGTGAGGAGTAAAACTCTCTGCAAATTTATGACTAATATC-GAAGTGTAGAATCAATTTTCTGAATGCATTTCTGTTCTTGATTTGAGGAATTACCCTTTGGGAATTTTGTATGTTAAAAGTGATTGAAAACTGCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E283581" ref_strand="-" ref_description="SGN-E283581 [cLES-1-C11]">
      <seq>gaagctgaagaaaaaaccgctggaggtttactgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcagggtgtctgatgtaatggctgtgctatcttagtgggactattgagttattccgtgccaaaaatttcagcagagatctaggaaggaggaagagctgcatccaactttcgagtgaggagtaatactctctgcaaattaatgatcaatatctcaggtgtagaatcaattttctgaactcatttctgttcttgatttgaggaattagcctttgggaattttgtatgtcaaaagattgaaaactgcagactatgagagataagcaataatatttgcataattcccataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="106373" stop="107564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106673" g_stop="106744" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106840" g_stop="107263" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="496" r_length="424" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="497" polyA_stop="511"/>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E283581" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283581" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="106673" e_stop="106744"/>
          <exon e_start="106840" e_stop="107263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCACAT</genome_strand>
        <mrna_strand>GAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGATAAGCAATAATATTTGCATAATTCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E419627" ref_strand="-" ref_description="SGN-E419627 [STM-29-P2]">
      <seq>gctgaagaaaaaactgctggaggcttactgttgactgaggcagccaaggagaagccttcaattggctcgattatagccgtcgggcctggtcctattgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctactccaaatatgcaggcagtgaattcaaaggggctgatggttctgattacatcacactcagggtgtctgatgtaatggctgtgctatcttagtggggctattgagctattccatgccaaaattttcagcagagatctaggaaggaggaagctgcattcaactttcgagtgaggagtaaaactctctgcaaatttatgactaatatcgaagtgtagaatcaattttctgaatgcatttctgttcttgatttgaggaattaccctttgggaattttgtatgttaaaagtgattgaaanctgcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="106376" stop="107515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106676" g_stop="106744" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106840" g_stop="107210" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="437" r_length="368" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="452" polyA_stop="470"/>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E419627" ref_strand="-">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419627" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="106676" e_stop="106744"/>
          <exon e_start="106840" e_stop="107210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAG</genome_strand>
        <mrna_strand>GCTGAAGAAAAAACTGCTGGAGGCTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCTCG...............................................................................................ATTATAGCCGTCGGGCCTGGTCCTATTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTACTCCAAATATGCAGGCAGTGAATTCAAAGGGGCTGATGGTTCTGATTACATCACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGGCTATTGAGCTATTCCATGCCAAAATTTTCAGCAGAGATCTAGGAAGGAGG-A-AGCTGCATTCAACTTTCGAGTGAGGAGTAAAACTCTCTGCAAATTTATGACTAATATC-GAAGTGTAGAATCAATTTTCTGAATGCATTTCTGTTCTTGATTTGAGGAATTACCCTTTGGGAATTTTGTATGTTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E267775" ref_strand="-" ref_description="SGN-E267775 [cLEI-12-D18]">
      <seq>actgttgactgaggcagccaaggagaagccttcaattggcacgattatagctgttgggcctggtcctcttgatgaagaagggaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcagggtgtctgatgtaatggctgtgctatcttagtgggactattgagttattccgtgccaaaaatttcagcagagatctaggaaggaggaagagctgcatccaactttcgagtgaggagtaatactctctgcaaattaatgatcaatatctcaggtgtagaatcaattttctgaactcatttctgttcttgatttgaggaattagcctttgggaattttgtatgtcaaaagattgaaaactgcagactatgagagattagcaataatatttgcataattcacataaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="106402" stop="107564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106702" g_stop="106744" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106840" g_stop="107263" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="467" r_length="424" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="468" polyA_stop="486"/>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E267775" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267775" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="106702" e_stop="106744"/>
          <exon e_start="106840" e_stop="107263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACGGTAAGAGATGGAAGAAGTTGCGTTGCTTTATCCATATCCCTATATCGATTGAGATGTTCAATAAACTAAACATTGTTTGATGTTTGAAATTACAGATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCACAT</genome_strand>
        <mrna_strand>ACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG...............................................................................................ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E329135" ref_strand="-" ref_description="SGN-E329135 [cTOD-2-E17]">
      <seq>gaacaggaaaccactttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcagggtgtctgatgtaatggctgtgctatcttagtgggactattgagttattccgtgccaaaaatttcagcagagatctaggaaggaggaagagctgcatccaactttcgagtgaggagtaatactctctgcaaattaatgatcaatatctcaggtgtagaatcaattttctgaactcatttctgttcttgatttgaggaattagcctttgggaattttgtatgtcaaaagattgaaaactgcagactatgagagattagcaataatatttgcataattcacatattggattgtgttcaagctgatgtttgtcatttttgggatcaagttgtatatccctagtcgctagtggatcaaagaggtagcttatttcgggatcgcatttttggaagcaagctttaaacaatagagccaatatatataggagaaaataaaaagttgaagttcagccaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="106578" stop="107731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106878" g_stop="107427" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="554" polyA_stop="573"/>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E329135" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329135" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="106878" e_stop="107427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCACATATTGGATTGTGTTCAAGCTGATGTTTGTCATTTTTGGGATCAAGTTGTATATCCCTAGTCGCTAGTGGATCAAAGAGGTAGCTTATTTCGGGATCGCATTTTTGGAAGCAAGCTTTAAACAATAGAGACAATATATATAGGAGAAAATAAAAAGTTGAAGTTCA</genome_strand>
        <mrna_strand>GAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCACATATTGGATTGTGTTCAAGCTGATGTTTGTCATTTTTGGGATCAAGTTGTATATCCCTAGTCGCTAGTGGATCAAAGAGGTAGCTTATTTCGGGATCGCATTTTTGGAAGCAAGCTTTAAACAATAGAGCCAATATATATAGGAGAAAATAAAAAGTTGAAGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E270568" ref_strand="-" ref_description="SGN-E270568 [cLEN-1-E15]">
      <seq>tttcagtatccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcagggtgtctgatgtaatggctgtgctatcttagtgggactattgagttattccgtgccaaaaatttcagcagagatctaggaaggaggaagagctgcatccaactttcgagtgaggagtaatactctctgcaaattaatgatcaatatctcaggtgtagaatcaattttctgaactcatttctgttcttgatttgaggaattagcctttgggaattttgtatgtcaaaagattgaaaactgcagactatgagagattagcaataatatttgcataattcacataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="106592" stop="107564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106892" g_stop="107263" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="373" polyA_stop="385"/>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E270568" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270568" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="106892" e_stop="107263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCACAT</genome_strand>
        <mrna_strand>TTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E224849" ref_strand="-" ref_description="SGN-E224849 [cLEL-27-N23]">
      <seq>tccccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcnagggtgtctgatgtaatggctgtgctatcttagtgggactattgagttattccgtgccaaaaatttcagcagagatctaggaaggaggaagagctgcatccaactttcgagtgaggagtaatactctctgcaaattaatgatcaatatctcaggtgtagaatcaattttctgaactcatttctgttcttgatttgaggaattagcctttgggaattttgtatgtcaaaagattgaaaactgcagactatgagagattagcaataatatttgcataattcacataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="106600" stop="107564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106900" g_stop="107263" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="366" polyA_stop="382"/>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E224849" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224849" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="106900" e_stop="107263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTC-AGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCACAT</genome_strand>
        <mrna_strand>TCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCNAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E224493" ref_strand="-" ref_description="SGN-E224493 [cLEL-27-N23]">
      <seq>ccaggaaatacagttctctattccaaatatgccggcagtgaattcaaaggtgctgatggatctgattatattacactcagggtgtctgatgtaatggctgtgctatcttagtgggactattgagttattccgtgccaaaaatttcagcagagatctaggaaggaggaagagctgcatccaactttcgagtgaggagtaatactctctgcaaattaatgatcaatatctcaggtgtagaatcaattttctgaactcatttctgttcttgatttgaggaattagcctttgggaattttgtatgtcaaaagattgaaaactgcagactatgagagattagcaataatatttgcataattcccataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="106603" stop="107564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106903" g_stop="107263" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="362" polyA_stop="378"/>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E224493" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224493" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="106903" e_stop="107263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCACAT</genome_strand>
        <mrna_strand>CCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E329233" ref_strand="-" ref_description="SGN-E329233 [cTOD-2-E14]">
      <seq>gtgaattcaaaggtgctgatggatctgattatattacactcagggtgtctgatgtaatggctgtgctatcttagtgggactattgagttattccgtgccaaaaatttcagcagagatctaggaaggaggaagagctgcatccaactttcgagtgaggagtaatactctctgcaaattaatgatcaatatctcaggtgtagaatcaattttctgaactcatttctgttcttgatttgaggaattagcctttgggaattttgtatgtcaaaagattgaaaactgcagactatgagagattagcaataatatttgcataattcacatattggattgtgttcaagctgatgtttgtcatttttgggatcaagttgtatatccctagtcgctagtggatcaaagaggtagcttatttcgggatcgcatttttggaagcaagctttaaacaatagagccaatatatataggagaaaataaaaagttgaagttcagcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="106640" stop="107731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106940" g_stop="107430" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="492" polyA_stop="511"/>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E329233" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329233" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="106940" e_stop="107430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCACATATTGGATTGTGTTCAAGCTGATGTTTGTCATTTTTGGGATCAAGTTGTATATCCCTAGTCGCTAGTGGATCAAAGAGGTAGCTTATTTCGGGATCGCATTTTTGGAAGCAAGCTTTAAACAATAGAGACAATATATATAGGAGAAAATAAAAAGTTGAAGTTCAGCA</genome_strand>
        <mrna_strand>GTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCACATATTGGATTGTGTTCAAGCTGATGTTTGTCATTTTTGGGATCAAGTTGTATATCCCTAGTCGCTAGTGGATCAAAGAGGTAGCTTATTTCGGGATCGCATTTTTGGAAGCAAGCTTTAAACAATAGAGCCAATATATATAGGAGAAAATAAAAAGTTGAAGTTCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E607119" ref_strand="+" ref_description="SGN-E607119 [23078]">
      <seq>gctgtgctatcttagtggggctattgagctattccatgccaaaattttcagcagagatctaggaaggaggaagctgcattcaactttcgagtgaggagtaatactctctgcaaattaatgactaatatcaaagtgtagaataaattttctgaatgcatttctgttcttgatttgaggaattaccctttgggaattttgttgttaaaagtgattgaaaactgcagattatgaaagattagcaataatatttgcataattcatataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="106699" stop="107564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106999" g_stop="107263" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="264" polyA_stop="278"/>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E607119" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E607119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106999" e_stop="107263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAA-AGATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCACAT</genome_strand>
        <mrna_strand>GCTGTGCTATCTTAGTGGGGCTATTGAGCTATTCCATGCCAAAATTTTCAGCAGAGATCTAGGAAGGAGG-A-AGCTGCATTCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGACTAATATC-AAAGTGTAGAATAAATTTTCTGAATGCATTTCTGTTCTTGATTTGAGGAATTACCCTTTGGGAATTTTGTTGTTAAAAGTGATTGAAAACTGCAGATTATGAAAGATTAGCAATAATATTTGCATAATTCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E609397" ref_strand="+" ref_description="SGN-E609397 [25404]">
      <seq>ctatcttagtggggctattgagctattccatgccaaaattttcagcagagatctaggaaggaggaagctgcattcaactttcgagtgaggagtaaaactctctgcaaatttatgactaatatcgaagtgtagaatcaattttctgaatgcatttctgttcttgatttgaggaattaccctttgggaattttgtatgttaaaagtgattgaaaactgcagattatgaaagattagcaataatatttgcataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="+" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="106705" stop="107556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107005" g_stop="107255" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="251" polyA_stop="264"/>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="+" ref_id="SGN-E609397" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>251</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E609397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107005" e_stop="107255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAA--GATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATA</genome_strand>
        <mrna_strand>CTATCTTAGTGGGGCTATTGAGCTATTCCATGCCAAAATTTTCAGCAGAGATCTAGGAAGGAGG-A-AGCTGCATTCAACTTTCGAGTGAGGAGTAAAACTCTCTGCAAATTTATGACTAATATC-GAAGTGTAGAATCAATTTTCTGAATGCATTTCTGTTCTTGATTTGAGGAATTACCCTTTGGGAATTTTGTATGTTAAAAGTGATTGAAAACTGCAGATTATGAAAGATTAGCAATAATATTTGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-qyQPr6/sgn_ests_tomato_potato" ref_id="SGN-E739515" ref_strand="+" ref_description="SGN-E739515 [LC17DB03]">
      <seq>cgatatgtcgaataaaacatgaactagtgttctcaaaaggttcagagctgtctaagtacaaaggcaataatactgagaacttagaggcagcctcatcgacaacatcgtatgggctggattctagtggcttcaacttttcattgcctgcattatgtgtggatggtgatgttcaatcgcattctaggaacattctaccttctgcagcaaataatatagatggactgaaccctgatgctttgctatcaagggattatgattctggaaaggatatacaaaacctattctctccttttggcaatgcccctagggatatagaaactgagctgtctgatgctgggatcaattctcaacaatttggggtgccaaacatgtcatacaagccaagatgtgccaacgatcttgctgtcaatgacaacggtattctgaacaataatgcatggacgaaccagactcagcgcatgagaacgtatacaaaggttcaaaaacgaggctctgtgggaagaactatagacgttactcgctacataggctatgatgaactaaggcatgatctagcacgtatgtttggaattgagggacagcttgaagatcctcaaagaactgagtggaagcttgtgtatgttgaccatgagaatgatatactgcttgttggtgacgatccttgggaggagtttgtgagctgtgttcagagcatcaaaatcttgtcttgcgctgaagtgcagcagatgagcttgaatggggatttgggtaatgtgccagtaccaaaccaagctagcagtggaactgacggtggtaatgcgtggaaaggacactacgatgacaactcagctgcatcatttaattgatgaaggtgctccaatttaatgaactaaaccttgcaatacatagtcatggaggctgcaaacgactaaatctgctgaatctcactgggagcaactgaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0106F06-zyLKE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0106F06.1" temp_strand="-" temp_description="C07HBa0106F06.1  AC212628.1 htgs_phase:2 submitted_to_sgn_as:gi|158262123|gb|AC212628.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0106F06, *** SEQUENCING IN PROGRESS ***">
        <position start="109157" stop="107407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108857" g_stop="108383" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108382" i_stop="108246" i_length="137">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108245" g_stop="108055" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="667" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108054" i_stop="107983" i_length="72">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107982" g_stop="107707" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="943" r_length="276" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0106F06.1" gen_strand="-" ref_id="SGN-E739515" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>942</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0106F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108857" e_stop="108383"/>
          <exon e_start="108245" e_stop="108055"/>
          <exon e_start="107982" e_stop="107707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGA-ATGTCGAATAAAACATGAACTAGTGTTCTCAAAAGGTTCAGAGCTGTCTAAGTACAAAGGCAATAATACTGAGAACTTAGAGGCAGCCTCATCGACAACATCGTATGGGGTGGATTCTAGTGGCTTCAACTTTTCATTGCCTGCATTATGTGTGGATGGTGATGTTCAATCGCATTCTAGGAACATTCTACCTTCTGCAGCAAATAATATAGATGGACTGAACCCTGATGCTTTGCTATCAAGGGATTATGATTCTGGAAAGGATATACAAAACCTATTCTCTCCTTTTGGCAATGCCCCTAGGGATATAGAAACTGAGCTGTCTGATGCTGGGATCAATTCTCAACAATTTGGGGTGCCAAACATGTCATACAAGCCAAGATGTGCCAACGATCTTGCTGTCAATGACAACGGTATTCTGAACAATAATGCATGGACGAACCAGACTCAGCGCATGAGAACGTATACAAAGGTTTGCTGCACACATGCTTTGCTCAGTTGATCACTTTTATGTGTTCTCTCTTATTTCGAGTTTCATATGATGGATTAGTAATGTTAAGTTTCATTCCCGTTATTTGTATTTTTAATATCTTTTTTGCAACTGTGAAGGTTCAAAAACGAGGCTCTGTGGGAAGAACTATAGACGTTACTCGCTACATAGGCTATGATGAACTAAGGCATGATCTAGCACGTATGTTTGGAATTGAGGGACAGCTTGAAGATCCTCAAAGAACTGAGTGGAAGCTTGTGTATGTTGACCATGAGAATGATATACTGCTTGTTGGTGACGATCCTTGGGAGTAAGTGTTGACTTTGTCAAAAGTTGTAGTATTACTTGTCCTAGATATTTATGTTTTCCCATTTTTTTTCAGGGAGTTTGTGAGCTGTGTTCAGAGCATCAAAATCTTGTCTTGCGCTGAAGTGCAGCAGATGAGCTTGAATGGGGATTTGGGTAATGTGCCAGTACCAAACCAAGCTAGCAGTGGAACTGACAGTGGTAATGCGTGGAAAGGACACTACGATGACAACTCAGCTGCATCATTTAATTGATGAAGGTGCTCCAATTAAATGAACTAAACCTTGCAATACATAGTCATGGAGGCTGCAAACGACTAAATCTGCTGATTCTCACTGGAGGCAACTGAGGT</genome_strand>
        <mrna_strand>CGATATGTCGAATAAAACATGAACTAGTGTTCTCAAAAGGTTCAGAGCTGTCTAAGTACAAAGGCAATAATACTGAGAACTTAGAGGCAGCCTCATCGACAACATCGTATGGGCTGGATTCTAGTGGCTTCAACTTTTCATTGCCTGCATTATGTGTGGATGGTGATGTTCAATCGCATTCTAGGAACATTCTACCTTCTGCAGCAAATAATATAGATGGACTGAACCCTGATGCTTTGCTATCAAGGGATTATGATTCTGGAAAGGATATACAAAACCTATTCTCTCCTTTTGGCAATGCCCCTAGGGATATAGAAACTGAGCTGTCTGATGCTGGGATCAATTCTCAACAATTTGGGGTGCCAAACATGTCATACAAGCCAAGATGTGCCAACGATCTTGCTGTCAATGACAACGGTATTCTGAACAATAATGCATGGACGAACCAGACTCAGCGCATGAGAACGTATACAAAG.........................................................................................................................................GTTCAAAAACGAGGCTCTGTGGGAAGAACTATAGACGTTACTCGCTACATAGGCTATGATGAACTAAGGCATGATCTAGCACGTATGTTTGGAATTGAGGGACAGCTTGAAGATCCTCAAAGAACTGAGTGGAAGCTTGTGTATGTTGACCATGAGAATGATATACTGCTTGTTGGTGACGATCCTTGGGA........................................................................GGAGTTTGTGAGCTGTGTTCAGAGCATCAAAATCTTGTCTTGCGCTGAAGTGCAGCAGATGAGCTTGAATGGGGATTTGGGTAATGTGCCAGTACCAAACCAAGCTAGCAGTGGAACTGACGGTGGTAATGCGTGGAAAGGACACTACGATGACAACTCAGCTGCATCATTTAATTGATGAAGGTGCTCCAATTTAATGAACTAAACCTTGCAATACATAGTCATGGAGGCTGCAAACGACTAAATCTGCTGAATCTCACTGGGAGCAACTGAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>199</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="12231" PGL_stop="14768"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12231" e_stop="12878"/>
            <exon e_start="14654" e_stop="14768"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.710" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="12231" e_stop="12878" e_length="648"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.710">
            <gDNA_intron_boundary i_start="12879" i_stop="14653" i_length="1775"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14654" e_stop="14768" e_length="115"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12231" stop="12878"/>
              <exon start="14654" stop="14768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731859" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCAGCACTCCTACGCACAGGAAAAATTCCCAGAACCTCCTTCACGCGCAAAGCCACCCTCCTTCTCCTTCTCTCTATCGCGCGTGGATAAGCAACGGATACTTGCGCTCCTGCTGCTCCGTACAGCACAAGACGACGCGAGTTTGTCCTTGGCATCATAGGATCGAGCCACGTCGTTTGCCAAGGACGAGGGATCGATCTCCACCCTCCACCCTTCACCTCCCTTTTTCCGTTCGAATCATCCGTATTTGGATAAGATTTCGGAATTTCGAAATGGGAAATGGGCCGAAATTCGTCTTACCCACCCAAAAATCGAAACCCTAATTATTTCCTCTATATAAACCCCTGTCTTCTTCACAATAGGGGGTTGGAAAAAATTTTTGGGGGGAAATTCTTTGGTTTTTCTGTTTGTTTCGAATGAACTAAAGAAAATTACAGAGAGTTGGAAGAAATTTCGGGAGTCATATTTAGGATTAACATGCATACAAAATACTCAAAGAAGTTGCTCTTTTCGCTTTCGTGATTAGGATTGGTGAGCTATTCAATTCTGCGACTTTTATTCCGTCATTCTGTGTTCATGTTTTCGTTTGGGTGAAGGTTGTTGCTGTTGCTGCTCGTTTCCGTCTCAGTCTTGCTGCTCGGAGAAAG : CATGTGAAATCCCTCTCGAGTCCATTTTGAGACTCCATTTTCCTCCTTGCATTTCGGAAGAGCCATGAAGGCTCGAAAATTTTTTATCGAGTCAATCTATCAAGGCAGGCGTACA</gDNA_template>
            <first_frame> P  S  T  P  T  H  R  K  N  S  Q  N  L  L  H  A  Q  S  H  P  P  S  P  S  L  Y  R  A  W  I  S  N  G  Y  L  R  S  C  C  S  V  Q  H  K  T  T  R  V  C  P  W  H  H  R  I  E  P  R  R  L  P  R  T  R  D  R  S  P  P  S  T  L  H  L  P  F  S  V  R  I  I  R  I  W  I  R  F  R  N  F  E  M  G  N  G  P  K  F  V  L  P  T  Q  K  S  K  P  *  L  F  P  L  Y  K  P  L  S  S  S  Q  *  G  V  G  K  N  F  W  G  E  I  L  W  F  F  C  L  F  R  M  N  *  R  K  L  Q  R  V  G  R  N  F  G  S  H  I  *  D  *  H  A  Y  K  I  L  K  E  V  A  L  F  A  F  V  I  R  I  G  E  L  F  N  S  A  T  F  I  P  S  F  C  V  H  V  F  V  W  V  K  V  V  A  V  A  A  R  F  R  L  S  L  A  A  R  R  K  :  H  V  K  S  L  S  S  P  F  *  D  S  I  F  L  L  A  F  R  K  S  H  E  G  S  K  I  F  Y  R  V  N  L  S  R  Q  A  Y  </first_frame>
            <second_frame>  P  A  L  L  R  T  G  K  I  P  R  T  S  F  T  R  K  A  T  L  L  L  L  L  S  I  A  R  G  *  A  T  D  T  C  A  P  A  A  P  Y  S  T  R  R  R  E  F  V  L  G  I  I  G  S  S  H  V  V  C  Q  G  R  G  I  D  L  H  P  P  P  F  T  S  L  F  P  F  E  S  S  V  F  G  *  D  F  G  I  S  K  W  E  M  G  R  N  S  S  Y  P  P  K  N  R  N  P  N  Y  F  L  Y  I  N  P  C  L  L  H  N  R  G  L  E  K  I  F  G  G  K  F  F  G  F  S  V  C  F  E  *  T  K  E  N  Y  R  E  L  E  E  I  S  G  V  I  F  R  I  N  M  H  T  K  Y  S  K  K  L  L  F  S  L  S  *  L  G  L  V  S  Y  S  I  L  R  L  L  F  R  H  S  V  F  M  F  S  F  G  *  R  L  L  L  L  L  L  V  S  V  S  V  L  L  L  G  E  S :   M  *  N  P  S  R  V  H  F  E  T  P  F  S  S  L  H  F  G  R  A  M  K  A  R  K  F  F  I  E  S  I  Y  Q  G  R  R  T </second_frame>
            <third_frame>   Q  H  S  Y  A  Q  E  K  F  P  E  P  P  S  R  A  K  P  P  S  F  S  F  S  L  S  R  V  D  K  Q  R  I  L  A  L  L  L  L  R  T  A  Q  D  D  A  S  L  S  L  A  S  *  D  R  A  T  S  F  A  K  D  E  G  S  I  S  T  L  H  P  S  P  P  F  F  R  S  N  H  P  Y  L  D  K  I  S  E  F  R  N  G  K  W  A  E  I  R  L  T  H  P  K  I  E  T  L  I  I  S  S  I  *  T  P  V  F  F  T  I  G  G  W  K  K  F  L  G  G  N  S  L  V  F  L  F  V  S  N  E  L  K  K  I  T  E  S  W  K  K  F  R  E  S  Y  L  G  L  T  C  I  Q  N  T  Q  R  S  C  S  F  R  F  R  D  *  D  W  *  A  I  Q  F  C  D  F  Y  S  V  I  L  C  S  C  F  R  L  G  E  G  C  C  C  C  C  S  F  P  S  Q  S  C  C  S  E  K   : A  C  E  I  P  L  E  S  I  L  R  L  H  F  P  P  C  I  S  E  E  P  *  R  L  E  N  F  L  S  S  Q  S  I  K  A  G  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0106F06.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12231" stop="12554"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSTPTHRKNSQNLLHAQSHPPSPSLYRAWISNGYLRSCCSVQHKTTRVCPWHHRIEPRRLPRTRDRSPPSTLHLPFSVRIIRIWIRFRNFEMGNGPKFVLPTQKSKP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0106F06.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12708" stop="12878"/>
                    <exon start="14654" stop="14683"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HAYKILKEVALFAFVIRIGELFNSATFIPSFCVHVFVWVKVVAVAARFRLSLAARRKHVKSLSSPF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="20506" PGL_stop="20155"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20506" e_stop="20155"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="20506" e_stop="20155" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20506" stop="20155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347153" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACGGTAAATCCATACCTATAAAGAGGAAACACAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGATTATGTCAAATCTTGTAATAATCTTGCAGATCCTCTTACGAAGGCCTTAACAAGAGAAAAGGTCTGGAGCACATCGAGGGGGATGGGATTGAAGCCTACAAATCCTTGATTCATATATGAGGAAACCCAACCTGGGGACTAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTGTGAAAAATGCACTATTTTTTTCCCTCCCTATGATGTGAGTGCATTATTTCCTGTAGTTTGTGAAGGTTGAGTTAATAAAAC</gDNA_template>
            <first_frame> N  G  K  S  I  P  I  K  R  K  H  S  N  V  R  S  Y  L  T  N  G  T  I  N  V  D  Y  V  K  S  C  N  N  L  A  D  P  L  T  K  A  L  T  R  E  K  V  W  S  T  S  R  G  M  G  L  K  P  T  N  P  *  F  I  Y  E  E  T  Q  P  G  D  *  R  S  Y  N  Q  V  Q  R  E  K  L  I  I  *  *  L  V  V  K  N  A  L  F  F  S  L  P  M  M  *  V  H  Y  F  L  *  F  V  K  V  E  L  I  K  </first_frame>
            <second_frame>  T  V  N  P  Y  L  *  R  G  N  T  V  M  *  D  R  I  *  Q  M  V  P  L  M  L  I  M  S  N  L  V  I  I  L  Q  I  L  L  R  R  P  *  Q  E  K  R  S  G  A  H  R  G  G  W  D  *  S  L  Q  I  L  D  S  Y  M  R  K  P  N  L  G  T  R  D  P  I  T  R  F  K  G  K  N  *  S  Y  D  D  L  L  *  K  M  H  Y  F  F  P  S  L  *  C  E  C  I  I  S  C  S  L  *  R  L  S  *  *  N </second_frame>
            <third_frame>   R  *  I  H  T  Y  K  E  E  T  Q  *  C  K  I  V  F  D  K  W  Y  H  *  C  *  L  C  Q  I  L  *  *  S  C  R  S  S  Y  E  G  L  N  K  R  K  G  L  E  H  I  E  G  D  G  I  E  A  Y  K  S  L  I  H  I  *  G  N  P  T  W  G  L  E  I  L  *  P  G  S  K  G  K  T  N  H  M  M  T  C  C  E  K  C  T  I  F  F  P  P  Y  D  V  S  A  L  F  P  V  V  C  E  G  *  V  N  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0106F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="36126" PGL_stop="35492"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36126" e_stop="35492"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="36126" e_stop="35492" e_length="635"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36126" stop="35492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36111" stop="35554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCCCTTATACTAATTATTAATCTAACTAAAGATGGTGAGGGCTAAAGTAAAGAAAGAGAAAAAAGTGAAAGGGGATCGTTATAAGGGTGTTCGTATGAGAAAATGGGGGAAATGGGTAGCTGAAGTACGGCAACCGAAAAGCCGTGACAGAATATGGTTAGGTTCTTACGATACTGCGGAGGAAGCGGCTAGAGCTTATGATGCAGCGGTGGTTTGTTTACGTGGACCGTCCGCGATGATTAATTTCCCGGACGATCCACCGCTGATTTCATGTGATGCTGATAATTATAAGTTGTCACCTTCCGAAATTCAAGTGAAGGCATCCAGACATGCACGTAGTAGTAGTACTAGAGTAAGTGAAGAGTTGGCTGCAGCTGCTGCTACCGTGGTTGTAGACCACCACCACAGCAGATCAGCAGCTGTGGAGAGTGTGTTTTTTAGAGATGATTTGGAGTTTGGATGTTCTTCTTTAGATCATGGGGAAGTAGTGTTGCATGATGATTTGTTTGATAGTGCTAGAATGTGGTCCTTTTGATGGATGAATCAATTCAAACACCTAATGTTGCTTATTGATACGTGGTTGTATTTGGACTAGATTAAAATGTATTCAAGTTTAGCTTGTATCCACTTAAAA</gDNA_template>
            <first_frame> C  P  Y  T  N  Y  *  S  N  *  R  W  *  G  L  K  *  R  K  R  K  K  *  K  G  I  V  I  R  V  F  V  *  E  N  G  G  N  G  *  L  K  Y  G  N  R  K  A  V  T  E  Y  G  *  V  L  T  I  L  R  R  K  R  L  E  L  M  M  Q  R  W  F  V  Y  V  D  R  P  R  *  L  I  S  R  T  I  H  R  *  F  H  V  M  L  I  I  I  S  C  H  L  P  K  F  K  *  R  H  P  D  M  H  V  V  V  V  L  E  *  V  K  S  W  L  Q  L  L  L  P  W  L  *  T  T  T  T  A  D  Q  Q  L  W  R  V  C  F  L  E  M  I  W  S  L  D  V  L  L  *  I  M  G  K  *  C  C  M  M  I  C  L  I  V  L  E  C  G  P  F  D  G  *  I  N  S  N  T  *  C  C  L  L  I  R  G  C  I  W  T  R  L  K  C  I  Q  V  *  L  V  S  T  *   </first_frame>
            <second_frame>  A  L  I  L  I  I  N  L  T  K  D  G  E  G  *  S  K  E  R  E  K  S  E  R  G  S  L  *  G  C  S  Y  E  K  M  G  E  M  G  S  *  S  T  A  T  E  K  P  *  Q  N  M  V  R  F  L  R  Y  C  G  G  S  G  *  S  L  *  C  S  G  G  L  F  T  W  T  V  R  D  D  *  F  P  G  R  S  T  A  D  F  M  *  C  *  *  L  *  V  V  T  F  R  N  S  S  E  G  I  Q  T  C  T  *  *  *  Y  *  S  K  *  R  V  G  C  S  C  C  Y  R  G  C  R  P  P  P  Q  Q  I  S  S  C  G  E  C  V  F  *  R  *  F  G  V  W  M  F  F  F  R  S  W  G  S  S  V  A  *  *  F  V  *  *  C  *  N  V  V  L  L  M  D  E  S  I  Q  T  P  N  V  A  Y  *  Y  V  V  V  F  G  L  D  *  N  V  F  K  F  S  L  Y  P  L  K  </second_frame>
            <third_frame>   P  L  Y  *  L  L  I  *  L  K  M  V  R  A  K  V  K  K  E  K  K  V  K  G  D  R  Y  K  G  V  R  M  R  K  W  G  K  W  V  A  E  V  R  Q  P  K  S  R  D  R  I  W  L  G  S  Y  D  T  A  E  E  A  A  R  A  Y  D  A  A  V  V  C  L  R  G  P  S  A  M  I  N  F  P  D  D  P  P  L  I  S  C  D  A  D  N  Y  K  L  S  P  S  E  I  Q  V  K  A  S  R  H  A  R  S  S  S  T  R  V  S  E  E  L  A  A  A  A  A  T  V  V  V  D  H  H  H  S  R  S  A  A  V  E  S  V  F  F  R  D  D  L  E  F  G  C  S  S  L  D  H  G  E  V  V  L  H  D  D  L  F  D  S  A  R  M  W  S  F  *  W  M  N  Q  F  K  H  L  M  L  L  I  D  T  W  L  Y  L  D  *  I  K  M  Y  S  S  L  A  C  I  H  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0106F06.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36100" stop="35591"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKMVRAKVKKEKKVKGDRYKGVRMRKWGKWVAEVRQPKSRDRIWLGSYDTAEEAARAYDAAVVCLRGPSAMINFPDDPPLISCDADNYKLSPSEIQVKASRHARSSSTRVSEELAAAAATVVVDHHHSRSAAVESVFFRDDLEFGCSSLDHGEVVLHDDLFDSARMWSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="47885" PGL_stop="48438"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47885" e_stop="48438"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="47885" e_stop="48438" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47885" stop="48438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48090" stop="48428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245958" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTGGCCCATCTAGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAAATGAGCAAGTGCAGAATGATGAATTACCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGTGGGTTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACTTCAGGTTCCGGAGGTACAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCACGGTTGACTACAGGGCGTATAATGACAAGTGATCAGCATAAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGATTTGGCGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  W  P  I  *  Y  *  G  G  D  S  S  T  D  *  G  S  S  K  R  G  *  G  R  G  K  *  A  S  A  E  *  *  I  T  T  P  T  Y  P  R  D  D  Q  S  G  S  C  L  S  *  W  V  I  *  S  R  P  D  T  S  S  V  F  C  T  S  T  S  G  S  G  G  T  T  C  G  Y  C  G  S  P  H  G  C  L  I  G  N  R  H  V  S  T  V  D  Y  R  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  I  W  R  *  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  G  P  S  S  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  N  E  Q  V  Q  N  D  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  L  Q  V  P  E  V  Q  H  A  A  T  V  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  G  R  I  M  T  S  D  Q  H  K  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  V  L  G  R  *  L  L  H  R  L  R  K  *  *  E  R  V  R  K  G  K  M  S  K  C  R  M  M  N  Y  H  P  N  L  P  Q  R  *  S  I  R  F  L  L  I  L  V  G  Y  L  I  K  A  R  H  L  Q  C  F  L  H  Q  H  F  R  F  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  P  H  W  K  *  A  R  F  H  G  *  L  Q  G  V  *  *  Q  V  I  S  I  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  P  M  I  F  W  L  I  V  M  S  Y  Y  T  R  W  V  *  *  N  D  L  A  L  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0106F06.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47886" stop="48437"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PGPSSTRAVTPPPTEEVVREGEEGENEQVQNDELPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPALQVPEVQHAATVAPRMDASLEIGTFPRLTTGRIMTSDQHKLFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVTYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="50007" PGL_stop="49177"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50007" e_stop="49177"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="50007" e_stop="49177" e_length="831"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50007" stop="49349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49938" stop="49177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49938" stop="49278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49535" stop="49205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATGCGAGGAAGAGGATACTTGTTCTTAACCGTTACCTTATTCAGTTGTCTGTAGTCTATGCACATCCGAAAGCTTCCATCCTTCTTCTTCACAAACAAAACAGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCCCTTAACTCAGCGGGAGCCATTCTATAAGGGGGTATATAAATGGGGCGAGTACCCGGTTCAAGATCGATGCAGAAGTCAATATCTCTATCTGGTGGCATACCAGGAAGGTCTGCAGGAAACACATCTAAAAACTCGCGGACTATCGAAACCGACTCAATCGAAGGTACTTGGGTAGTATCATCCCTGAGGTGTGCCAAGAAAGCTAAACAACCCTTACTAACCATTCTCTTAGCACGAAGAAAGGAGACGATACGAACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGCCTAACGTCATAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACAAGACAAGACCTATACACCTTTTCAACTATCAAAGACTCACCCACTGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGAT</gDNA_template>
            <first_frame> S  M  R  G  R  G  Y  L  F  L  T  V  T  L  F  S  C  L  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  *  M  G  R  V  P  G  S  R  S  M  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  K  N  S  R  T  I  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  Q  P  L  L  T  I  L  L  A  R  R  K  E  T  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  P  N  V  I  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  V  T  R  Q  D  L  Y  T  F  S  T  I  K  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  K  R  L  P  V  M  T  T  S  D </first_frame>
            <second_frame>  Q  C  E  E  E  D  T  C  S  *  P  L  P  Y  S  V  V  C  S  L  C  T  S  E  S  F  H  P  S  S  S  Q  T  K  Q  E  H  P  K  G  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  P  L  T  P  L  T  Q  R  E  P  F  Y  K  G  V  Y  K  W  G  E  Y  P  V  Q  D  R  C  R  S  Q  Y  L  Y  L  V  A  Y  Q  E  G  L  Q  E  T  H  L  K  T  R  G  L  S  K  P  T  Q  S  K  V  L  G  *  Y  H  P  *  G  V  P  R  K  L  N  N  P  Y  *  P  F  S  *  H  E  E  R  R  R  Y  E  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  C  L  T  S  *  F  *  H  Y  N  P  R  L  Q  N  L  E  K  A  K  S  Y  P  E  L  H  Q  S  Q  P  F  L  R  *  P  S  L  H  E  Y  C  S  P  Q  K  S  Q  D  K  T  Y  T  P  F  Q  L  S  K  T  H  P  L  E  *  K  H  E  *  A  C  Q  A  I  H  N  V  N  *  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  K  D  Y  L  *  *  Q  H  Q   </second_frame>
            <third_frame>   N  A  R  K  R  I  L  V  L  N  R  Y  L  I  Q  L  S  V  V  Y  A  H  P  K  A  S  I  L  L  L  H  K  Q  N  R  S  T  P  R  G  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  G  L  *  L  P  *  L  S  G  S  H  S  I  R  G  Y  I  N  G  A  S  T  R  F  K  I  D  A  E  V  N  I  S  I  W  W  H  T  R  K  V  C  R  K  H  I  *  K  L  A  D  Y  R  N  R  L  N  R  R  Y  L  G  S  I  I  P  E  V  C  Q  E  S  *  T  T  L  T  N  H  S  L  S  T  K  K  G  D  D  T  N  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  A  *  R  H  S  F  S  I  T  I  Q  D  C  K  I  W  R  K  P  S  H  T  Q  N  Y  I  K  V  N  H  F  *  D  N  Q  V  Y  M  S  I  A  P  H  K  S  H  K  T  R  P  I  H  L  F  N  Y  Q  R  L  T  H  W  S  R  N  T  N  R  H  V  K  Q  F  T  M  *  I  K  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  N  I  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0106F06.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49788" stop="49555"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGRVPGSRSMQKSISLSGGIPGRSAGNTSKNSRTIETDSIEGTWVVSSLRCAKKAKQPLLTILLARRKETIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0106F06.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49868" stop="49653"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLCSTTLEVGPLTPLTQREPFYKGVYKWGEYPVQDRCRSQYLYLVAYQEGLQETHLKTRGLSKPTQSKVLG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="49235" PGL_stop="49895"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49235" e_stop="49895"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="49235" e_stop="49895" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49235" stop="49895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCAGTGGGTGAGTCTTTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACTTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGACTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTATGACGTTAGGCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTTCGTATCGTCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAGGGTTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCGATTGAGTCGGTTTCGATAGTCCGCGAGTTTTTAGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCAGATAGAGATATTGACTTCTGCATCGATCTTGAACCGGGTACTCGCCCCATTTATATACCCCCTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCCCCTTGGG</gDNA_template>
            <first_frame> F  D  P  G  S  T  F  S  Y  V  S  S  S  F  A  N  G  L  N  L  H  C  E  L  L  D  M  P  I  R  V  S  T  P  V  G  E  S  L  I  V  E  K  V  Y  R  S  C  L  V  T  F  V  G  S  N  T  H  V  D  L  V  I  L  E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  M  T  L  G  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  V  S  F  L  R  A  K  R  M  V  S  K  G  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  S  V  S  I  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  Y  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  </first_frame>
            <second_frame>  L  I  L  D  P  H  F  L  M  Y  L  P  H  L  L  M  V  L  I  Y  I  V  N  C  L  T  C  L  F  V  F  L  L  Q  W  V  S  L  *  *  L  K  R  C  I  G  L  V  L  *  L  L  W  G  A  I  L  M  *  T  W  L  S  *  K  W  L  T  L  M  *  F  W  V  *  L  G  F  L  Q  I  L  Q  S  W  I  V  M  L  K  L  *  R  *  A  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  F  V  S  S  P  F  F  V  L  R  E  W  L  V  R  V  V  *  L  S  W  H  T  S  G  M  I  L  P  K  Y  L  R  L  S  R  F  R  *  S  A  S  F  *  M  C  F  L  Q  T  F  L  V  C  H  Q  I  E  I  L  T  S  A  S  I  L  N  R  V  L  A  P  F  I  Y  P  L  I  E  W  L  P  L  S  *  G  S  *  R  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  P  L  G </second_frame>
            <third_frame>   *  S  W  I  H  I  F  L  C  I  F  L  I  C  *  W  S  *  F  T  L  *  I  A  *  H  A  Y  S  C  F  Y  S  S  G  *  V  F  D  S  *  K  G  V  *  V  L  S  C  D  F  C  G  E  Q  Y  S  C  R  L  G  Y  L  R  N  G  *  L  *  C  N  S  G  Y  D  L  A  F  S  K  F  C  N  L  G  L  *  C  *  N  Y  D  V  R  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  S  Y  R  L  L  S  S  C  *  E  N  G  *  *  G  L  F  S  F  L  G  T  P  Q  G  *  Y  Y  P  S  T  F  D  *  V  G  F  D  S  P  R  V  F  R  C  V  S  C  R  P  S  W  Y  A  T  R  *  R  Y  *  L  L  H  R  S  *  T  G  Y  S  P  H  L  Y  T  P  L  *  N  G  S  R  *  V  K  G  V  K  G  P  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0106F06.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49235" stop="49894"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDPGSTFSYVSSSFANGLNLHCELLDMPIRVSTPVGESLIVEKVYRSCLVTFVGSNTHVDLVILEMVDFDVILGMTWLSPNFAILDCNAKTMTLGKPGTDPLVWEGDYTSNPVRIVSFLRAKRMVSKGCLAFLAHLRDDTTQVPSIESVSIVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPIYIPPYRMAPAELRELKAQLQELLSKGFIRPSASPW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="51778" PGL_stop="51237"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51778" e_stop="51237"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="51778" e_stop="51237" e_length="542"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51778" stop="51237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353207" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCCGATATGATGGAGAGTGGAACCCCATGCAATCGAACAATTTCTGAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGGAATGAAGTGGGCAGACTTAGTTAACCTATCAAAGATTACCCAAATGGAGTCATACTTACCCATTGTCCTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCCGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTCTGGTGTTCATATTTTACTTGCTGACAATATGAACATTTGGCAATAAAATCAACAATGTCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCGCGGTACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGAGCCTCTGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAACACCTTCCTCGTCGATTTTTGCTTCTTT</gDNA_template>
            <first_frame> S  A  C  N  V  F  Q  N  L  E  V  N  C  V  P  L  S  D  M  M  E  S  G  T  P  C  N  R  T  I  S  E  M  *  S  L  A  N  F  S  A  L  *  V  T  L  T  G  M  K  W  A  D  L  V  N  L  S  K  I  T  Q  M  E  S  Y  L  P  I  V  L  G  R  P  T  T  K  S  I  A  I  L  S  H  F  H  S  G  M  G  I  L  *  S  V  P  P  G  L  W  C  S  Y  F  T  C  *  Q  Y  E  H  L  A  I  K  S  T  M  S  R  F  I  L  L  H  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  S  V  R  I  V  *  I  K  S  S  T  R  G  T  H  T  L  P  L  I  L  K  T  P  S  S  S  I  F  A  S   </first_frame>
            <second_frame>  P  H  A  M  F  S  K  T  *  K  *  T  A  Y  L  Y  P  I  *  W  R  V  E  P  H  A  I  E  Q  F  L  R  C  K  V  W  L  T  S  L  H  C  K  S  P  *  P  E  *  S  G  Q  T  *  L  T  Y  Q  R  L  P  K  W  S  H  T  Y  P  L  S  L  E  D  Q  P  R  S  P  L  Q  F  S  P  T  S  I  P  E  W  A  F  S  E  V  F  L  R  A  S  G  V  H  I  L  L  A  D  N  M  N  I  W  Q  *  N  Q  Q  C  H  A  S  F  Y  S  T  K  S  V  A  L  G  R  G  T  S  W  L  H  Q  D  V  *  N  T  L  N  Y  E  P  L  *  E  *  C  E  S  N  H  R  R  G  V  H  I  P  F  P  *  F  S  K  H  L  P  R  R  F  L  L  L  </second_frame>
            <third_frame>   R  M  Q  C  F  P  K  L  R  S  K  L  R  T  S  I  R  Y  D  G  E  W  N  P  M  Q  S  N  N  F  *  D  V  K  F  G  *  L  L  C  I  V  S  H  L  N  R  N  E  V  G  R  L  S  *  P  I  K  D  Y  P  N  G  V  I  L  T  H  C  P  W  K  T  N  H  E  V  H  C  N  S  L  P  L  P  F  R  N  G  H  S  L  K  C  S  S  G  P  L  V  F  I  F  Y  L  L  T  I  *  T  F  G  N  K  I  N  N  V  T  L  H  S  T  P  P  K  V  L  L  *  V  A  V  H  L  G  C  T  R  M  Y  R  I  P  *  T  M  S  L  C  K  N  S  V  N  Q  I  I  D  A  G  Y  T  Y  P  S  L  N  S  Q  N  T  F  L  V  D  F  C  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0106F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="95074" PGL_stop="93832"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95074" e_stop="94847"/>
            <exon e_start="94139" e_stop="93832"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.153" acc_prob="0.000" e_score="0.956"/>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="95074" e_stop="94847" e_length="228"/>
          </exon>
          <intron i_serial="1" don_prob="0.153" acc_prob="0.000">
            <gDNA_intron_boundary i_start="94846" i_stop="94140" i_length="707"/>
          </intron>
          <exon e_serial="2" e_score="0.951">
            <gDNA_exon_boundary e_start="94139" e_stop="93832" e_length="308"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95074" stop="94847"/>
              <exon start="94139" stop="93832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243194" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGAGAGGTTCTTTGTGTTGAGACATAAATTTTGCAAAGGAGATTATGGAGAGGAGAAGCAAGTTGTTAAAGATTAAGTGAAGAAGGTGGACAAATTTATTTTGTCAGAAATTCAGGCCAAGGGGGAGATTTGTTGGGTTTTATTTGCCCTAAATTTCTTACCATAAATAGATTTTCCTTTTAGAAAAAGGTTTTGGATTGAATAATCTTTTTCTTGTAGGAAAAG : GTTTTGGATTGAATAATCTTTTTCTTGTAGGAAAAGGTTTAGGACTCTATAAATAGAGGAATGTTTCTTCTAACTTAATTAGCATTCACAATGTAGTCTTAAGAGCTTTGAGAGTTTTGGTTAGGGGGAGAATTTATGGGTCACAAGCTTGATACGTTATCACTTGTGTGAACCTCCCATGTATTCCGAGTGAATTGGTTGAGGTTGTTTCCCTCTGTATTTTGTACTCTCATATTTATAGTGGATTGCTCATCTCCTTTGTGGACGTAGTTTGATTGACCGAACCACGTTAAATCTCTGTGTCTTTT</gDNA_template>
            <first_frame> F  R  E  V  L  C  V  E  T  *  I  L  Q  R  R  L  W  R  G  E  A  S  C  *  R  L  S  E  E  G  G  Q  I  Y  F  V  R  N  S  G  Q  G  G  D  L  L  G  F  I  C  P  K  F  L  T  I  N  R  F  S  F  *  K  K  V  L  D  *  I  I  F  F  L  *  E  K  :  V  L  D  *  I  I  F  F  L  *  E  K  V  *  D  S  I  N  R  G  M  F  L  L  T  *  L  A  F  T  M  *  S  *  E  L  *  E  F  W  L  G  G  E  F  M  G  H  K  L  D  T  L  S  L  V  *  T  S  H  V  F  R  V  N  W  L  R  L  F  P  S  V  F  C  T  L  I  F  I  V  D  C  S  S  P  L  W  T  *  F  D  *  P  N  H  V  K  S  L  C  L   </first_frame>
            <second_frame>  S  E  R  F  F  V  L  R  H  K  F  C  K  G  D  Y  G  E  E  K  Q  V  V  K  D  *  V  K  K  V  D  K  F  I  L  S  E  I  Q  A  K  G  E  I  C  W  V  L  F  A  L  N  F  L  P  *  I  D  F  P  F  R  K  R  F  W  I  E  *  S  F  S  C  R  K  R :   F  W  I  E  *  S  F  S  C  R  K  R  F  R  T  L  *  I  E  E  C  F  F  *  L  N  *  H  S  Q  C  S  L  K  S  F  E  S  F  G  *  G  E  N  L  W  V  T  S  L  I  R  Y  H  L  C  E  P  P  M  Y  S  E  *  I  G  *  G  C  F  P  L  Y  F  V  L  S  Y  L  *  W  I  A  H  L  L  C  G  R  S  L  I  D  R  T  T  L  N  L  C  V  F  </second_frame>
            <third_frame>   Q  R  G  S  L  C  *  D  I  N  F  A  K  E  I  M  E  R  R  S  K  L  L  K  I  K  *  R  R  W  T  N  L  F  C  Q  K  F  R  P  R  G  R  F  V  G  F  Y  L  P  *  I  S  Y  H  K  *  I  F  L  L  E  K  G  F  G  L  N  N  L  F  L  V  G  K   : G  F  G  L  N  N  L  F  L  V  G  K  G  L  G  L  Y  K  *  R  N  V  S  S  N  L  I  S  I  H  N  V  V  L  R  A  L  R  V  L  V  R  G  R  I  Y  G  S  Q  A  *  Y  V  I  T  C  V  N  L  P  C  I  P  S  E  L  V  E  V  V  S  L  C  I  L  Y  S  H  I  Y  S  G  L  L  I  S  F  V  D  V  V  *  L  T  E  P  R  *  I  S  V  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0106F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="100002" PGL_stop="100387"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100002" e_stop="100387"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="100002" e_stop="100387" e_length="386"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100002" stop="100387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338242" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTATAACACGTTATCAGCACGAGTCTCTGTCTAATTGAGAGTGAGTTCTTGTTTTTCTTAAGTTCATATTTTGGTTGATCTCGTTATGAAGATCAAAGTATTATATGCATAAAATCAGTTATGTATTTTCTAGAATATTTTTATGATTTAGAATAAAATAGTATTCAGTCACTAACAATTATCAGGAACCGAAGACATATACTACTATTGGTTGAATATGACATGCTATACAAAATTTCTTAAATAGAAAAAGGTATAAAATTTTAATAGCATGAATTTGAATGTTATTTTGATTGTTTTGAAAGACTCAAAGGATGAGTCATGTTGTACTTCGATTTATTATACCGTTGGTTAAGGGTAAGACGATGGATTCAAGTTTCATCG</gDNA_template>
            <first_frame> F  Y  N  T  L  S  A  R  V  S  V  *  L  R  V  S  S  C  F  S  *  V  H  I  L  V  D  L  V  M  K  I  K  V  L  Y  A  *  N  Q  L  C  I  F  *  N  I  F  M  I  *  N  K  I  V  F  S  H  *  Q  L  S  G  T  E  D  I  Y  Y  Y  W  L  N  M  T  C  Y  T  K  F  L  K  *  K  K  V  *  N  F  N  S  M  N  L  N  V  I  L  I  V  L  K  D  S  K  D  E  S  C  C  T  S  I  Y  Y  T  V  G  *  G  *  D  D  G  F  K  F  H   </first_frame>
            <second_frame>  F  I  T  R  Y  Q  H  E  S  L  S  N  *  E  *  V  L  V  F  L  K  F  I  F  W  L  I  S  L  *  R  S  K  Y  Y  M  H  K  I  S  Y  V  F  S  R  I  F  L  *  F  R  I  K  *  Y  S  V  T  N  N  Y  Q  E  P  K  T  Y  T  T  I  G  *  I  *  H  A  I  Q  N  F  L  N  R  K  R  Y  K  I  L  I  A  *  I  *  M  L  F  *  L  F  *  K  T  Q  R  M  S  H  V  V  L  R  F  I  I  P  L  V  K  G  K  T  M  D  S  S  F  I  </second_frame>
            <third_frame>   L  *  H  V  I  S  T  S  L  C  L  I  E  S  E  F  L  F  F  L  S  S  Y  F  G  *  S  R  Y  E  D  Q  S  I  I  C  I  K  S  V  M  Y  F  L  E  Y  F  Y  D  L  E  *  N  S  I  Q  S  L  T  I  I  R  N  R  R  H  I  L  L  L  V  E  Y  D  M  L  Y  K  I  S  *  I  E  K  G  I  K  F  *  *  H  E  F  E  C  Y  F  D  C  F  E  R  L  K  G  *  V  M  L  Y  F  D  L  L  Y  R  W  L  R  V  R  R  W  I  Q  V  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0106F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="100447" PGL_stop="101207"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100447" e_stop="101207"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="100447" e_stop="101207" e_length="761"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100447" stop="101207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354965" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATAAGACGATAGATTCAAGTTCTATCGCACCAAAAGGGTAAGACATCAATTTGAGTTTTGATGCACCGTGATTGGGTTCAAGTCCCATAGAATTATGGCGTAAAACGCCTTATATGGATAAGACATTGAGTTTGAGTCAATGCACCATAATGATGATATAATGATGACTAGGCTTTGATGAAAAGTCTTGAAATTCGTTCTATTGAATTTGCTTCATTCCTTGAAAAGAATGTGGTAGCAACATGTAATAACTCTGAAATCCGCCTGTTAACTTGCTCCATTCAATCATACGAATGTGGTAGCAGTGAATGTTAGTCTGAAAGATGACAAATGATTAATGATATGAATAAGGGCGTGGAGGGACATAATTATAATAGTCATCATTGTGGTAATGATAAAAGGAAGAACACTATGAGTTCTTCAAATAGTCCTTCAAAATGTGAAGGCAATTTTTATTAACAAAATGGTATGAAAGGTCATTAGACTTGTGAATGTTGTCAACCCAATAATTTGACAAATTTATAAATCCTCTATCATGATACAAGATAAAGTGATGGTACACTTAATCTTTCAAAGTGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGTCATGACAATGTGCTTATAATGCAAATTTATGAAGTACATATAAATAATTAGTCCAATCCTTGAAGAGAATGTGACTTGTAATGAGTATCGTGAATGCTCGACCATTCTATAAGAGAATGGGTCCAGATGTGATAAAATCATT</gDNA_template>
            <first_frame> D  K  T  I  D  S  S  S  I  A  P  K  G  *  D  I  N  L  S  F  D  A  P  *  L  G  S  S  P  I  E  L  W  R  K  T  P  Y  M  D  K  T  L  S  L  S  Q  C  T  I  M  M  I  *  *  *  L  G  F  D  E  K  S  *  N  S  F  Y  *  I  C  F  I  P  *  K  E  C  G  S  N  M  *  *  L  *  N  P  P  V  N  L  L  H  S  I  I  R  M  W  *  Q  *  M  L  V  *  K  M  T  N  D  *  *  Y  E  *  G  R  G  G  T  *  L  *  *  S  S  L  W  *  *  *  K  E  E  H  Y  E  F  F  K  *  S  F  K  M  *  R  Q  F  L  L  T  K  W  Y  E  R  S  L  D  L  *  M  L  S  T  Q  *  F  D  K  F  I  N  P  L  S  *  Y  K  I  K  *  W  Y  T  *  S  F  K  V  M  L  R  C  V  M  E  I  *  *  I  L  K  S  *  Q  C  A  Y  N  A  N  L  *  S  T  Y  K  *  L  V  Q  S  L  K  R  M  *  L  V  M  S  I  V  N  A  R  P  F  Y  K  R  M  G  P  D  V  I  K  S   </first_frame>
            <second_frame>  I  R  R  *  I  Q  V  L  S  H  Q  K  G  K  T  S  I  *  V  L  M  H  R  D  W  V  Q  V  P  *  N  Y  G  V  K  R  L  I  W  I  R  H  *  V  *  V  N  A  P  *  *  *  Y  N  D  D  *  A  L  M  K  S  L  E  I  R  S  I  E  F  A  S  F  L  E  K  N  V  V  A  T  C  N  N  S  E  I  R  L  L  T  C  S  I  Q  S  Y  E  C  G  S  S  E  C  *  S  E  R  *  Q  M  I  N  D  M  N  K  G  V  E  G  H  N  Y  N  S  H  H  C  G  N  D  K  R  K  N  T  M  S  S  S  N  S  P  S  K  C  E  G  N  F  Y  *  Q  N  G  M  K  G  H  *  T  C  E  C  C  Q  P  N  N  L  T  N  L  *  I  L  Y  H  D  T  R  *  S  D  G  T  L  N  L  S  K  *  C  *  G  V  S  W  K  Y  D  E  F  *  S  H  D  N  V  L  I  M  Q  I  Y  E  V  H  I  N  N  *  S  N  P  *  R  E  C  D  L  *  *  V  S  *  M  L  D  H  S  I  R  E  W  V  Q  M  *  *  N  H  </second_frame>
            <third_frame>   *  D  D  R  F  K  F  Y  R  T  K  R  V  R  H  Q  F  E  F  *  C  T  V  I  G  F  K  S  H  R  I  M  A  *  N  A  L  Y  G  *  D  I  E  F  E  S  M  H  H  N  D  D  I  M  M  T  R  L  *  *  K  V  L  K  F  V  L  L  N  L  L  H  S  L  K  R  M  W  *  Q  H  V  I  T  L  K  S  A  C  *  L  A  P  F  N  H  T  N  V  V  A  V  N  V  S  L  K  D  D  K  *  L  M  I  *  I  R  A  W  R  D  I  I  I  I  V  I  I  V  V  M  I  K  G  R  T  L  *  V  L  Q  I  V  L  Q  N  V  K  A  I  F  I  N  K  M  V  *  K  V  I  R  L  V  N  V  V  N  P  I  I  *  Q  I  Y  K  S  S  I  M  I  Q  D  K  V  M  V  H  L  I  F  Q  S  D  V  E  V  C  H  G  N  M  M  N  F  K  V  M  T  M  C  L  *  C  K  F  M  K  Y  I  *  I  I  S  P  I  L  E  E  N  V  T  C  N  E  Y  R  E  C  S  T  I  L  *  E  N  G  S  R  C  D  K  I  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0106F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="103313" PGL_stop="102638"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103313" e_stop="102638"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="103313" e_stop="102638" e_length="676"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103313" stop="102638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103313" stop="102911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273387" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGACACCTCGATTGTTTCAAGGATTTTCATATAACCTTCATTGTCTAGCTAGACATTACAATTATTCATTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCGCATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGAACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTATGTATTTTACTTGGCCAACCATTTATCTGTCCACACTATATGACAGATTTGAATTCAAGATCCTCGTCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATACCGTCGACTGTTATTTGATATCGATTCCAACAAGACATAACTTATCGAGATCTCTTCATTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAGATTGTATGAAGTGTTATGTCAATGTGCTCCTTTATAGAACTTGCCTCATTATCATGACCATATTGATCATTTGCTCCTTCCTTCTTCAAGGAATTTTATATTTGGAATCGATTGGTTTATTACGCTTCCGGCGTATCATAGACTCTG</gDNA_template>
            <first_frame> F  R  H  L  D  C  F  K  D  F  H  I  T  F  I  V  *  L  D  I  T  I  I  H  Y  M  H  S  S  F  S  Y  V  A  R  S  K  Q  T  S  L  H  P  P  K  E  K  T  S  P  I  M  S  G  F  L  R  *  T  F  M  P  Q  G  T  N  R  I  *  Y  L  T  V  I  L  S  H  N  N  L  F  V  P  H  *  H  Y  T  L  I  Y  E  L  P  V  Q  N  V  T  F  L  S  E  T  K  Y  T  *  I  M  Y  F  T  W  P  T  I  Y  L  S  T  L  Y  D  R  F  E  F  K  I  L  V  T  I  Y  I  I  E  R  Y  L  I  S  K  I  P  S  T  V  I  *  Y  R  F  Q  Q  D  I  T  Y  R  D  L  F  I  F  H  Y  F  R  Y  L  N  L  F  Q  D  C  M  K  C  Y  V  N  V  L  L  Y  R  T  C  L  I  I  M  T  I  L  I  I  C  S  F  L  L  Q  G  I  L  Y  L  E  S  I  G  L  L  R  F  R  R  I  I  D  S  </first_frame>
            <second_frame>  S  D  T  S  I  V  S  R  I  F  I  *  P  S  L  S  S  *  T  L  Q  L  F  I  T  C  I  Q  V  F  H  M  L  P  D  Q  N  K  P  H  C  I  H  Q  R  R  K  H  L  Q  *  C  Q  D  F  C  D  K  P  L  C  P  K  A  Q  T  V  F  D  I  L  R  L  Y  Y  R  I  I  I  Y  L  Y  P  T  D  I  I  P  *  F  M  N  Y  Q  S  K  M  S  L  F  *  V  K  Q  N  I  L  E  L  C  I  L  L  G  Q  P  F  I  C  P  H  Y  M  T  D  L  N  S  R  S  S  S  Q  F  I  S  L  S  A  T  S  Y  Q  R  Y  R  R  L  L  F  D  I  D  S  N  K  T  *  L  I  E  I  S  S  F  F  I  I  S  G  T  *  T  F  F  K  I  V  *  S  V  M  S  M  C  S  F  I  E  L  A  S  L  S  *  P  Y  *  S  F  A  P  S  F  F  K  E  F  Y  I  W  N  R  L  V  Y  Y  A  S  G  V  S  *  T  L </second_frame>
            <third_frame>   Q  T  P  R  L  F  Q  G  F  S  Y  N  L  H  C  L  A  R  H  Y  N  Y  S  L  H  A  F  K  F  F  I  C  C  Q  I  K  T  N  L  I  A  S  T  K  G  E  N  I  S  N  N  V  R  I  F  A  I  N  L  Y  A  P  R  H  K  P  Y  L  I  S  Y  G  Y  T  I  A  *  *  F  I  C  T  P  L  T  L  Y  L  D  L  *  T  T  S  P  K  C  H  F  S  K  *  N  K  I  Y  L  N  Y  V  F  Y  L  A  N  H  L  S  V  H  T  I  *  Q  I  *  I  Q  D  P  R  H  N  L  Y  H  *  A  L  P  H  I  K  D  T  V  D  C  Y  L  I  S  I  P  T  R  H  N  L  S  R  S  L  H  F  S  L  F  Q  V  P  E  P  F  S  R  L  Y  E  V  L  C  Q  C  A  P  L  *  N  L  P  H  Y  H  D  H  I  D  H  L  L  L  P  S  S  R  N  F  I  F  G  I  D  W  F  I  T  L  P  A  Y  H  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0106F06.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103311" stop="103081"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTPRLFQGFSYNLHCLARHYNYSLHAFKFFICCQIKTNLIASTKGENISNNVRIFAINLYAPRHKPYLISYGYTIA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0106F06.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102860" stop="102639"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRFQQDITYRDLFIFHYFRYLNLFQDCMKCYVNVLLYRTCLIIMTILIICSFLLQGILYLESIGLLRFRRIIDS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="102919" PGL_stop="103883"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102919" e_stop="103883"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="102919" e_stop="103883" e_length="965"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102919" stop="103597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102920" stop="103475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102924" stop="103377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102968" stop="103551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103326" stop="103735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103402" stop="103883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208613" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATAAATGGTTGGCCAAGTAAAATACATAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTTCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAACTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAATATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGGCATAAATGATGATTCAATTTGATCTCAAAAGAAGGATGAAGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTTGACCAGATATTTGTTTTGCAGTAAATTTACTGGCAAGATTCAGTTTCTCCCCGATAAAAGGACATTGAAATGGTGTTGAGCACATGATTGAATATCCTCGAAGGACCATAGTTATGGGTTTATTCTATCCCGGGGAATCCAAGACAAAATTGATTGATTACGCAGATGCAGAATATTTA</gDNA_template>
            <first_frame> T  R  I  L  N  S  N  L  S  Y  S  V  D  R  *  M  V  G  Q  V  K  Y  I  I  Q  V  Y  F  V  S  L  R  K  V  T  F  W  T  G  S  S  *  I  K  V  *  C  Q  W  G  T  N  K  L  L  C  D  S  I  T  V  R  Y  Q  I  R  F  V  P  W  G  I  K  V  Y  R  K  N  P  D  I  I  G  D  V  F  S  F  G  G  C  N  E  V  C  F  D  L  A  T  Y  E  K  L  E  C  M  *  *  I  I  V  M  S  S  *  T  M  K  V  I  *  K  S  L  K  Q  S  R  C  L  K  H  I  R  V  *  K  K  L  F  Q  *  S  F  K  N  P  Y  M  D  *  N  S  Q  G  R  K  R  V  Q  K  N  D  P  N  C  P  C  I  F  M  K  K  V  L  V  R  Q  N  F  V  L  T  Y  R  L  L  I  *  Q  I  I  Y  L  S  N  S  A  H  T  L  K  N  F  D  A  I  L  C  G  Y  I  A  F  I  E  Y  P  N  D  Y  E  I  T  W  H  K  *  *  F  N  L  I  S  K  E  G  *  R  V  S  W  *  *  N  S  I  L  V  Q  S  G  H  *  C  I  L  L  T  I  F  D  Q  I  F  V  L  Q  *  I  Y  W  Q  D  S  V  S  P  R  *  K  D  I  E  M  V  L  S  T  *  L  N  I  L  E  G  P  *  L  W  V  Y  S  I  P  G  N  P  R  Q  N  *  L  I  T  Q  M  Q  N  I   </first_frame>
            <second_frame>  R  G  S  *  I  Q  I  C  H  I  V  W  T  D  K  W  L  A  K  *  N  T  *  F  K  Y  I  L  F  H  L  E  K  *  H  F  G  L  V  V  H  K  S  R  Y  N  V  S  G  V  Q  I  N  Y  Y  A  I  V  *  P  *  D  I  K  Y  G  L  C  L  G  A  *  R  F  I  A  K  I  L  T  L  L  E  M  F  S  P  L  V  D  A  M  R  F  V  L  I  W  Q  H  M  K  N  L  N  A  C  N  E  *  L  *  C  L  A  R  Q  *  R  L  Y  E  N  P  *  N  N  R  G  V  *  S  I  *  E  F  E  R  N  F  S  N  K  A  S  R  I  L  I  W  I  E  I  V  K  E  E  K  G  Y  K  R  M  T  L  I  V  L  V  F  L  *  K  R  S  W  *  D  K  I  L  S  *  P  T  D  C  *  F  D  K  *  Y  I  C  L  T  V  H  I  H  *  K  I  L  M  Q  F  Y  V  D  I  S  H  S  L  S  T  P  M  I  M  R  S  L  G  I  N  D  D  S  I  *  S  Q  K  K  D  E  E  F  L  G  D  E  T  L  S  W  C  N  Q  G  T  S  A  S  Y  *  Q  Y  L  T  R  Y  L  F  C  S  K  F  T  G  K  I  Q  F  L  P  D  K  R  T  L  K  W  C  *  A  H  D  *  I  S  S  K  D  H  S  Y  G  F  I  L  S  R  G  I  Q  D  K  I  D  *  L  R  R  C  R  I  F  </second_frame>
            <third_frame>   E  D  L  E  F  K  S  V  I  *  C  G  Q  I  N  G  W  P  S  K  I  H  N  S  S  I  F  C  F  T  *  K  S  D  I  L  D  W  *  F  I  N  Q  G  I  M  S  V  G  Y  K  *  I  I  M  R  *  Y  N  R  K  I  S  N  T  V  C  A  L  G  H  K  G  L  S  Q  K  S  *  H  Y  W  R  C  F  L  L  W  W  M  Q  *  G  L  F  *  S  G  N  I  *  K  T  *  M  H  V  M  N  N  C  N  V  *  L  D  N  E  G  Y  M  K  I  L  E  T  I  E  V  S  E  A  Y  K  S  L  K  E  T  F  P  I  K  L  Q  E  S  L  Y  G  L  K  *  S  R  K  K  K  G  T  K  E  *  P  *  L  S  L  Y  F  Y  E  K  G  L  G  K  T  K  F  C  L  D  L  Q  I  V  N  L  T  N  N  I  F  V  *  Q  C  T  Y  T  E  K  F  *  C  N  F  M  W  I  Y  R  I  H  *  V  P  Q  *  L  *  D  H  L  A  *  M  M  I  Q  F  D  L  K  R  R  M  K  S  F  L  V  M  K  L  Y  L  G  A  I  R  A  L  V  H  L  T  N  N  I  *  P  D  I  C  F  A  V  N  L  L  A  R  F  S  F  S  P  I  K  G  H  *  N  G  V  E  H  M  I  E  Y  P  R  R  T  I  V  M  G  L  F  Y  P  G  E  S  K  T  K  L  I  D  Y  A  D  A  E  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0106F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="104849" PGL_stop="107430"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104849" e_stop="104955"/>
            <exon e_start="105054" e_stop="105234"/>
            <exon e_start="105868" e_stop="106047"/>
            <exon e_start="106130" e_stop="106285"/>
            <exon e_start="106667" e_stop="106744"/>
            <exon e_start="106840" e_stop="107430"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.426" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104849" e_stop="104955" e_length="107"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.426">
            <gDNA_intron_boundary i_start="104956" i_stop="105053" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105054" e_stop="105234" e_length="181"/>
          </exon>
          <intron i_serial="2" don_prob="0.973" acc_prob="0.989">
            <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105868" e_stop="106047" e_length="180"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.947">
            <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106130" e_stop="106285" e_length="156"/>
          </exon>
          <intron i_serial="4" don_prob="0.901" acc_prob="0.926">
            <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="106667" e_stop="106744" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.929" acc_prob="1.000">
            <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="106840" e_stop="107430" e_length="591"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104849" stop="104955"/>
              <exon start="105054" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104849" stop="104955"/>
              <exon start="105054" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104849" stop="104955"/>
              <exon start="105054" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104849" stop="104955"/>
              <exon start="105054" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104851" stop="104955"/>
              <exon start="105054" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104854" stop="104955"/>
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            <gDNA_exon_coordinates>
              <exon start="105951" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545994" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105955" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375483" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105967" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="106935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105998" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106004" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106021" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106025" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414633" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106028" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585620" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106035" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265752" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106133" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106138" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106139" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370280" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106151" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463988" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106162" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106211" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537871" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106221" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268964" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106257" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546001" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106673" stop="106744"/>
              <exon start="106840" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283581" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106676" stop="106744"/>
              <exon start="106840" stop="107210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419627" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106702" stop="106744"/>
              <exon start="106840" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267775" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106878" stop="107427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329135" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106892" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270568" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106900" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224849" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106903" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224493" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106940" stop="107430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329233" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106999" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107005" stop="107255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609397" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTCTTGAACCTTCTAGGGTTTTGTTATCCTCTTCTTACCTACTCTCCTCCATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAG : AAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG : TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG : ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG : GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG : ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCACATATTGGATTGTGTTCAAGCTGATGTTTGTCATTTTTGGGATCAAGTTGTATATCCCTAGTCGCTAGTGGATCAAAGAGGTAGCTTATTTCGGGATCGCATTTTTGGAAGCAAGCTTTAAACAATAGAGACAATATATATAGGAGAAAATAAAAAGTTGAAGTTCAGCA</gDNA_template>
            <first_frame> S  S  *  T  F  *  G  F  V  I  L  F  L  P  T  L  L  H  I  S  N  N  L  L  Q  L  R  R  R  K  N  L  S  K  F  R :   K  K  M  A  S  T  Q  L  T  A  S  S  I  S  G  N  G  F  A  S  F  E  G  L  R  S  T  C  I  V  K  T  V  S  F  A  P  L  K  H  N  N  S  R  S  F  S  R  L  V  V  K  A  A  T  T  V  A  P  K  :  Y  T  T  L  K  P  L  G  D  R  V  L  V  K  I  K  T  A  E  E  K  T  V  G  G  I  L  L  P  V  S  V  Q  S  K  P  N  G  G  E  V  V  A  V  G  E  G  H  S  A  G  K  T  K  V  D  I  S  V  K  :  T  G  A  Q  V  I  Y  S  K  Y  A  G  T  E  V  E  F  D  G  S  K  H  L  I  L  K  E  D  D  I  V  G  I  L  E  T  D  D  V  K  D  L  Q  P  L  N  D  R  V  L  I  K  :  V  A  E  A  E  E  K  T  A  G  G  L  L  L  T  E  A  A  K  E  K  P  S  I  G  T  :  I  I  A  V  G  P  G  P  L  D  E  E  G  N  R  K  P  L  S  V  S  P  G  N  T  V  L  Y  S  K  Y  A  G  S  E  F  K  G  A  D  G  S  D  Y  I  T  L  R  V  S  D  V  M  A  V  L  S  *  W  D  Y  *  V  I  P  C  Q  K  F  Q  Q  R  S  R  K  E  E  E  L  H  P  T  F  E  *  G  V  I  L  S  A  N  *  *  S  I  S  Q  V  *  N  Q  F  S  E  L  I  S  V  L  D  L  R  N  *  P  L  G  I  L  Y  V  K  R  L  K  T  A  D  Y  E  R  L  A  I  I  F  A  *  F  T  Y  W  I  V  F  K  L  M  F  V  I  F  G  I  K  L  Y  I  P  S  R  *  W  I  K  E  V  A  Y  F  G  I  A  F  L  E  A  S  F  K  Q  *  R  Q  Y  I  *  E  K  I  K  S  *  S  S  A </first_frame>
            <second_frame>  P  L  E  P  S  R  V  L  L  S  S  S  Y  L  L  S  S  I  F  P  T  I  Y  S  S  *  E  E  E  K  T  Y  P  N  S   : E  K  K  W  R  P  L  S  *  Q  H  P  L  S  L  A  M  V  L  H  P  L  K  G  S  G  P  L  A  L  *  R  P  Y  L  L  L  L  *  S  T  T  T  A  G  L  L  V  V  L  L  S  R  R  L  P  P  *  L  L  S :   T  L  H  L  S  L  W  A  T  E  S  W  *  R  L  R  L  Q  R  R  R  L  L  V  V  S  Y  F  Q  Y  Q  F  S  R  N  L  M  E  V  R  W  L  L  L  G  R  V  I  Q  L  A  K  P  K  W  T  L  V  *  R :   L  V  P  K  S  S  T  R  S  T  Q  E  L  R  W  S  L  M  D  Q  S  T  S  F  *  K  R  M  I  L  L  V  F  L  R  Q  M  M  S  R  I  C  S  H  *  M  T  E  S  *  S  R :   L  Q  K  L  K  K  K  P  L  E  V  Y  C  *  L  R  Q  P  R  R  S  L  Q  L  A  R :   L  *  L  L  G  L  V  L  L  M  K  K  G  T  G  N  H  F  Q  Y  P  Q  E  I  Q  F  S  I  P  N  M  P  A  V  N  S  K  V  L  M  D  L  I  I  L  H  S  G  C  L  M  *  W  L  C  Y  L  S  G  T  I  E  L  F  R  A  K  N  F  S  R  D  L  G  R  R  K  S  C  I  Q  L  S  S  E  E  *  Y  S  L  Q  I  N  D  Q  Y  L  R  C  R  I  N  F  L  N  S  F  L  F  L  I  *  G  I  S  L  W  E  F  C  M  S  K  D  *  K  L  Q  T  M  R  D  *  Q  *  Y  L  H  N  S  H  I  G  L  C  S  S  *  C  L  S  F  L  G  S  S  C  I  S  L  V  A  S  G  S  K  R  *  L  I  S  G  S  H  F  W  K  Q  A  L  N  N  R  D  N  I  Y  R  R  K  *  K  V  E  V  Q   </second_frame>
            <third_frame>   L  L  N  L  L  G  F  C  Y  P  L  L  T  Y  S  P  P  Y  F  Q  Q  F  T  P  V  E  K  K  K  K  L  I  Q  I  Q  :  K  K  N  G  V  H  S  A  N  S  I  L  Y  L  W  Q  W  F  C  I  L  *  R  A  Q  V  H  L  H  C  K  D  R  I  F  C  S  F  E  A  Q  Q  Q  Q  V  F  *  S  S  C  C  Q  G  G  Y  H  R  S  S  *   : V  H  Y  T  *  A  F  G  R  Q  S  L  G  E  D  *  D  C  R  G  E  D  C  W  W  Y  P  T  S  S  I  S  S  V  E  T  *  W  R  *  G  G  C  C  W  G  G  S  F  S  W  Q  N  Q  S  G  H  *  C  E   : D  W  C  P  S  H  L  L  E  V  R  R  N  *  G  G  V  *  W  I  K  A  P  H  S  E  R  G  *  Y  C  W  Y  S  *  D  R  *  C  Q  G  S  A  A  I  K  *  Q  S  P  N  Q   : G  C  R  S  *  R  K  N  R  W  R  F  T  V  D  *  G  S  Q  G  E  A  F  N  W  H   : D  Y  S  C  W  A  W  S  S  *  *  R  R  E  Q  E  T  T  F  S  I  P  R  K  Y  S  S  L  F  Q  I  C  R  Q  *  I  Q  R  C  *  W  I  *  L  Y  Y  T  Q  G  V  *  C  N  G  C  A  I  L  V  G  L  L  S  Y  S  V  P  K  I  S  A  E  I  *  E  G  G  R  A  A  S  N  F  R  V  R  S  N  T  L  C  K  L  M  I  N  I  S  G  V  E  S  I  F  *  T  H  F  C  S  *  F  E  E  L  A  F  G  N  F  V  C  Q  K  I  E  N  C  R  L  *  E  I  S  N  N  I  C  I  I  H  I  L  D  C  V  Q  A  D  V  C  H  F  W  D  Q  V  V  Y  P  *  S  L  V  D  Q  R  G  S  L  F  R  D  R  I  F  G  S  K  L  *  T  I  E  T  I  Y  I  G  E  N  K  K  L  K  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0106F06.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104867" stop="104955"/>
                    <exon start="105054" stop="105234"/>
                    <exon start="105868" stop="106047"/>
                    <exon start="106130" stop="106285"/>
                    <exon start="106667" stop="106744"/>
                    <exon start="106840" stop="107013"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>855</number_coding_nucleotides>
                  <number_encoded_amino_acids>285</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFVILFLPTLLHISNNLLQLRRRKNLSKFRKKMASTQLTASSISGNGFASFEGLRSTCIVKTVSFAPLKHNNSRSFSRLVVKAATTVAPKYTTLKPLGDRVLVKIKTAEEKTVGGILLPVSVQSKPNGGEVVAVGEGHSAGKTKVDISVKTGAQVIYSKYAGTEVEFDGSKHLILKEDDIVGILETDDVKDLQPLNDRVLIKVAEAEEKTAGGLLLTEAAKEKPSIGTIIAVGPGPLDEEGNRKPLSVSPGNTVLYSKYAGSEFKGADGSDYITLRVSDVMAVLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="104908" e_stop="104955"/>
            <exon e_start="105059" e_stop="105234"/>
            <exon e_start="105868" e_stop="106047"/>
            <exon e_start="106130" e_stop="106285"/>
            <exon e_start="106667" e_stop="106744"/>
            <exon e_start="106840" e_stop="107430"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104908" e_stop="104955" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="104956" i_stop="105058" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105059" e_stop="105234" e_length="176"/>
          </exon>
          <intron i_serial="2" don_prob="0.973" acc_prob="0.989">
            <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105868" e_stop="106047" e_length="180"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.947">
            <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106130" e_stop="106285" e_length="156"/>
          </exon>
          <intron i_serial="4" don_prob="0.901" acc_prob="0.926">
            <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="106667" e_stop="106744" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.929" acc_prob="1.000">
            <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="106840" e_stop="107430" e_length="591"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104908" stop="104955"/>
              <exon start="105059" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106204"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106673" stop="106744"/>
              <exon start="106840" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283581" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106676" stop="106744"/>
              <exon start="106840" stop="107210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419627" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106702" stop="106744"/>
              <exon start="106840" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267775" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106878" stop="107427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329135" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106892" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270568" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106900" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224849" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106903" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224493" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106940" stop="107430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329233" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106999" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107005" stop="107255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609397" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAG : AAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG : TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG : ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG : GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG : ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCACATATTGGATTGTGTTCAAGCTGATGTTTGTCATTTTTGGGATCAAGTTGTATATCCCTAGTCGCTAGTGGATCAAAGAGGTAGCTTATTTCGGGATCGCATTTTTGGAAGCAAGCTTTAAACAATAGAGACAATATATATAGGAGAAAATAAAAAGTTGAAGTTCAGCA</gDNA_template>
            <first_frame> Q  Q  F  T  P  V  E  K  K  K  K  L  I  Q  I  Q  :  K  W  R  P  L  S  *  Q  H  P  L  S  L  A  M  V  L  H  P  L  K  G  S  G  P  L  A  L  *  R  P  Y  L  L  L  L  *  S  T  T  T  A  G  L  L  V  V  L  L  S  R  R  L  P  P  *  L  L  S :   T  L  H  L  S  L  W  A  T  E  S  W  *  R  L  R  L  Q  R  R  R  L  L  V  V  S  Y  F  Q  Y  Q  F  S  R  N  L  M  E  V  R  W  L  L  L  G  R  V  I  Q  L  A  K  P  K  W  T  L  V  *  R :   L  V  P  K  S  S  T  R  S  T  Q  E  L  R  W  S  L  M  D  Q  S  T  S  F  *  K  R  M  I  L  L  V  F  L  R  Q  M  M  S  R  I  C  S  H  *  M  T  E  S  *  S  R :   L  Q  K  L  K  K  K  P  L  E  V  Y  C  *  L  R  Q  P  R  R  S  L  Q  L  A  R :   L  *  L  L  G  L  V  L  L  M  K  K  G  T  G  N  H  F  Q  Y  P  Q  E  I  Q  F  S  I  P  N  M  P  A  V  N  S  K  V  L  M  D  L  I  I  L  H  S  G  C  L  M  *  W  L  C  Y  L  S  G  T  I  E  L  F  R  A  K  N  F  S  R  D  L  G  R  R  K  S  C  I  Q  L  S  S  E  E  *  Y  S  L  Q  I  N  D  Q  Y  L  R  C  R  I  N  F  L  N  S  F  L  F  L  I  *  G  I  S  L  W  E  F  C  M  S  K  D  *  K  L  Q  T  M  R  D  *  Q  *  Y  L  H  N  S  H  I  G  L  C  S  S  *  C  L  S  F  L  G  S  S  C  I  S  L  V  A  S  G  S  K  R  *  L  I  S  G  S  H  F  W  K  Q  A  L  N  N  R  D  N  I  Y  R  R  K  *  K  V  E  V  Q   </first_frame>
            <second_frame>  N  N  L  L  Q  L  R  R  R  K  N  L  S  K  F  R :   N  G  V  H  S  A  N  S  I  L  Y  L  W  Q  W  F  C  I  L  *  R  A  Q  V  H  L  H  C  K  D  R  I  F  C  S  F  E  A  Q  Q  Q  Q  V  F  *  S  S  C  C  Q  G  G  Y  H  R  S  S  *   : V  H  Y  T  *  A  F  G  R  Q  S  L  G  E  D  *  D  C  R  G  E  D  C  W  W  Y  P  T  S  S  I  S  S  V  E  T  *  W  R  *  G  G  C  C  W  G  G  S  F  S  W  Q  N  Q  S  G  H  *  C  E   : D  W  C  P  S  H  L  L  E  V  R  R  N  *  G  G  V  *  W  I  K  A  P  H  S  E  R  G  *  Y  C  W  Y  S  *  D  R  *  C  Q  G  S  A  A  I  K  *  Q  S  P  N  Q   : G  C  R  S  *  R  K  N  R  W  R  F  T  V  D  *  G  S  Q  G  E  A  F  N  W  H   : D  Y  S  C  W  A  W  S  S  *  *  R  R  E  Q  E  T  T  F  S  I  P  R  K  Y  S  S  L  F  Q  I  C  R  Q  *  I  Q  R  C  *  W  I  *  L  Y  Y  T  Q  G  V  *  C  N  G  C  A  I  L  V  G  L  L  S  Y  S  V  P  K  I  S  A  E  I  *  E  G  G  R  A  A  S  N  F  R  V  R  S  N  T  L  C  K  L  M  I  N  I  S  G  V  E  S  I  F  *  T  H  F  C  S  *  F  E  E  L  A  F  G  N  F  V  C  Q  K  I  E  N  C  R  L  *  E  I  S  N  N  I  C  I  I  H  I  L  D  C  V  Q  A  D  V  C  H  F  W  D  Q  V  V  Y  P  *  S  L  V  D  Q  R  G  S  L  F  R  D  R  I  F  G  S  K  L  *  T  I  E  T  I  Y  I  G  E  N  K  K  L  K  F  S  </second_frame>
            <third_frame>   T  I  Y  S  S  *  E  E  E  K  T  Y  P  N  S   : E  M  A  S  T  Q  L  T  A  S  S  I  S  G  N  G  F  A  S  F  E  G  L  R  S  T  C  I  V  K  T  V  S  F  A  P  L  K  H  N  N  S  R  S  F  S  R  L  V  V  K  A  A  T  T  V  A  P  K  :  Y  T  T  L  K  P  L  G  D  R  V  L  V  K  I  K  T  A  E  E  K  T  V  G  G  I  L  L  P  V  S  V  Q  S  K  P  N  G  G  E  V  V  A  V  G  E  G  H  S  A  G  K  T  K  V  D  I  S  V  K  :  T  G  A  Q  V  I  Y  S  K  Y  A  G  T  E  V  E  F  D  G  S  K  H  L  I  L  K  E  D  D  I  V  G  I  L  E  T  D  D  V  K  D  L  Q  P  L  N  D  R  V  L  I  K  :  V  A  E  A  E  E  K  T  A  G  G  L  L  L  T  E  A  A  K  E  K  P  S  I  G  T  :  I  I  A  V  G  P  G  P  L  D  E  E  G  N  R  K  P  L  S  V  S  P  G  N  T  V  L  Y  S  K  Y  A  G  S  E  F  K  G  A  D  G  S  D  Y  I  T  L  R  V  S  D  V  M  A  V  L  S  *  W  D  Y  *  V  I  P  C  Q  K  F  Q  Q  R  S  R  K  E  E  E  L  H  P  T  F  E  *  G  V  I  L  S  A  N  *  *  S  I  S  Q  V  *  N  Q  F  S  E  L  I  S  V  L  D  L  R  N  *  P  L  G  I  L  Y  V  K  R  L  K  T  A  D  Y  E  R  L  A  I  I  F  A  *  F  T  Y  W  I  V  F  K  L  M  F  V  I  F  G  I  K  L  Y  I  P  S  R  *  W  I  K  E  V  A  Y  F  G  I  A  F  L  E  A  S  F  K  Q  *  R  Q  Y  I  *  E  K  I  K  S  *  S  S  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0106F06.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104928" stop="104955"/>
                    <exon start="105059" stop="105234"/>
                    <exon start="105868" stop="106047"/>
                    <exon start="106130" stop="106285"/>
                    <exon start="106667" stop="106744"/>
                    <exon start="106840" stop="107013"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>789</number_coding_nucleotides>
                  <number_encoded_amino_acids>263</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEEKTYPNSEMASTQLTASSISGNGFASFEGLRSTCIVKTVSFAPLKHNNSRSFSRLVVKAATTVAPKYTTLKPLGDRVLVKIKTAEEKTVGGILLPVSVQSKPNGGEVVAVGEGHSAGKTKVDISVKTGAQVIYSKYAGTEVEFDGSKHLILKEDDIVGILETDDVKDLQPLNDRVLIKVAEAEEKTAGGLLLTEAAKEKPSIGTIIAVGPGPLDEEGNRKPLSVSPGNTVLYSKYAGSEFKGADGSDYITLRVSDVMAVLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="104890" e_stop="105234"/>
            <exon e_start="105868" e_stop="106047"/>
            <exon e_start="106130" e_stop="106285"/>
            <exon e_start="106667" e_stop="106744"/>
            <exon e_start="106840" e_stop="107430"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104890" e_stop="105234" e_length="345"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.989">
            <gDNA_intron_boundary i_start="105235" i_stop="105867" i_length="633"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105868" e_stop="106047" e_length="180"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.947">
            <gDNA_intron_boundary i_start="106048" i_stop="106129" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106130" e_stop="106285" e_length="156"/>
          </exon>
          <intron i_serial="3" don_prob="0.901" acc_prob="0.926">
            <gDNA_intron_boundary i_start="106286" i_stop="106666" i_length="381"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106667" e_stop="106744" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.929" acc_prob="1.000">
            <gDNA_intron_boundary i_start="106745" i_stop="106839" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="106840" e_stop="107430" e_length="591"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104890" stop="105234"/>
              <exon start="105868" stop="105978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104934" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="106973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104942" stop="105234"/>
              <exon start="105868" stop="105969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104964" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105048" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="106911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105052" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="106947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105054" stop="105234"/>
              <exon start="105868" stop="105980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105056" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105057" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105057" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105057" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105057" stop="105234"/>
              <exon start="105868" stop="106005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105058" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="106966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105058" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="106893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105058" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105058" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105058" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105059" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="106870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105059" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="106848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105059" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105059" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105059" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105064" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105071" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105074" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105074" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105074" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105075" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105080" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="106849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105087" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="106869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105095" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105100" stop="105234"/>
              <exon start="105868" stop="105913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105101" stop="105234"/>
              <exon start="105868" stop="105950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105105" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="106869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105114" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105153" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105179" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105185" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105186" stop="105234"/>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105868" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="106980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105934" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105951" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545994" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105955" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375483" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105967" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="106935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105998" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106004" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106021" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106025" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414633" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106028" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585620" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106035" stop="106047"/>
              <exon start="106130" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265752" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106133" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106138" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106139" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370280" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106151" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463988" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106162" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106211" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537871" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106221" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268964" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106257" stop="106285"/>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546001" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106667" stop="106744"/>
              <exon start="106840" stop="107225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106673" stop="106744"/>
              <exon start="106840" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283581" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106676" stop="106744"/>
              <exon start="106840" stop="107210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419627" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106702" stop="106744"/>
              <exon start="106840" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267775" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106878" stop="107427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329135" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106892" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270568" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106900" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224849" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106903" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224493" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106940" stop="107430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329233" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106999" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107005" stop="107255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609397" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACTCTCCTCCATATTTCCAACAATTTACTCCAGTTGAGAAGAAGAAAAAACTTATCCAAATTCAGGTACCCTTTTGCTTCTAAATTCTTCTTCTTTGCATTAATTTTCCTTTTCCGATTGAGTATACTAACCAATTTTCATTGTTTAATTTGATTGGGTTTAGAAAAAAAATGGCGTCCACTCAGCTAACAGCATCCTCTATCTCTGGCAATGGTTTTGCATCCTTTGAAGGGCTCAGGTCCACTTGCATTGTAAAGACCGTATCTTTTGCTCCTTTGAAGCACAACAACAGCAGGTCTTTTAGTCGTCTTGTTGTCAAGGCGGCTACCACCGTAGCTCCTAAG : TACACTACACTTAAGCCTTTGGGCGACAGAGTCTTGGTGAAGATTAAGACTGCAGAGGAGAAGACTGTTGGTGGTATCCTACTTCCAGTATCAGTTCAGTCGAAACCTAATGGAGGTGAGGTGGTTGCTGTTGGGGAGGGTCATTCAGCTGGCAAAACCAAAGTGGACATTAGTGTGAAG : ACTGGTGCCCAAGTCATCTACTCGAAGTACGCAGGAACTGAGGTGGAGTTTGATGGATCAAAGCACCTCATTCTGAAAGAGGATGATATTGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTGCAGCCATTAAATGACAGAGTCCTAATCAAG : GTTGCAGAAGCTGAAGAAAAAACCGCTGGAGGTTTACTGTTGACTGAGGCAGCCAAGGAGAAGCCTTCAATTGGCACG : ATTATAGCTGTTGGGCCTGGTCCTCTTGATGAAGAAGGGAACAGGAAACCACTTTCAGTATCCCCAGGAAATACAGTTCTCTATTCCAAATATGCCGGCAGTGAATTCAAAGGTGCTGATGGATCTGATTATATTACACTCAGGGTGTCTGATGTAATGGCTGTGCTATCTTAGTGGGACTATTGAGTTATTCCGTGCCAAAAATTTCAGCAGAGATCTAGGAAGGAGGAAGAGCTGCATCCAACTTTCGAGTGAGGAGTAATACTCTCTGCAAATTAATGATCAATATCTCAGGTGTAGAATCAATTTTCTGAACTCATTTCTGTTCTTGATTTGAGGAATTAGCCTTTGGGAATTTTGTATGTCAAAAGATTGAAAACTGCAGACTATGAGAGATTAGCAATAATATTTGCATAATTCACATATTGGATTGTGTTCAAGCTGATGTTTGTCATTTTTGGGATCAAGTTGTATATCCCTAGTCGCTAGTGGATCAAAGAGGTAGCTTATTTCGGGATCGCATTTTTGGAAGCAAGCTTTAAACAATAGAGACAATATATATAGGAGAAAATAAAAAGTTGAAGTTCAGCA</gDNA_template>
            <first_frame> Y  S  P  P  Y  F  Q  Q  F  T  P  V  E  K  K  K  K  L  I  Q  I  Q  V  P  F  C  F  *  I  L  L  L  C  I  N  F  P  F  P  I  E  Y  T  N  Q  F  S  L  F  N  L  I  G  F  R  K  K  M  A  S  T  Q  L  T  A  S  S  I  S  G  N  G  F  A  S  F  E  G  L  R  S  T  C  I  V  K  T  V  S  F  A  P  L  K  H  N  N  S  R  S  F  S  R  L  V  V  K  A  A  T  T  V  A  P  K  :  Y  T  T  L  K  P  L  G  D  R  V  L  V  K  I  K  T  A  E  E  K  T  V  G  G  I  L  L  P  V  S  V  Q  S  K  P  N  G  G  E  V  V  A  V  G  E  G  H  S  A  G  K  T  K  V  D  I  S  V  K  :  T  G  A  Q  V  I  Y  S  K  Y  A  G  T  E  V  E  F  D  G  S  K  H  L  I  L  K  E  D  D  I  V  G  I  L  E  T  D  D  V  K  D  L  Q  P  L  N  D  R  V  L  I  K  :  V  A  E  A  E  E  K  T  A  G  G  L  L  L  T  E  A  A  K  E  K  P  S  I  G  T  :  I  I  A  V  G  P  G  P  L  D  E  E  G  N  R  K  P  L  S  V  S  P  G  N  T  V  L  Y  S  K  Y  A  G  S  E  F  K  G  A  D  G  S  D  Y  I  T  L  R  V  S  D  V  M  A  V  L  S  *  W  D  Y  *  V  I  P  C  Q  K  F  Q  Q  R  S  R  K  E  E  E  L  H  P  T  F  E  *  G  V  I  L  S  A  N  *  *  S  I  S  Q  V  *  N  Q  F  S  E  L  I  S  V  L  D  L  R  N  *  P  L  G  I  L  Y  V  K  R  L  K  T  A  D  Y  E  R  L  A  I  I  F  A  *  F  T  Y  W  I  V  F  K  L  M  F  V  I  F  G  I  K  L  Y  I  P  S  R  *  W  I  K  E  V  A  Y  F  G  I  A  F  L  E  A  S  F  K  Q  *  R  Q  Y  I  *  E  K  I  K  S  *  S  S  A </first_frame>
            <second_frame>  T  L  L  H  I  S  N  N  L  L  Q  L  R  R  R  K  N  L  S  K  F  R  Y  P  F  A  S  K  F  F  F  F  A  L  I  F  L  F  R  L  S  I  L  T  N  F  H  C  L  I  *  L  G  L  E  K  K  W  R  P  L  S  *  Q  H  P  L  S  L  A  M  V  L  H  P  L  K  G  S  G  P  L  A  L  *  R  P  Y  L  L  L  L  *  S  T  T  T  A  G  L  L  V  V  L  L  S  R  R  L  P  P  *  L  L  S :   T  L  H  L  S  L  W  A  T  E  S  W  *  R  L  R  L  Q  R  R  R  L  L  V  V  S  Y  F  Q  Y  Q  F  S  R  N  L  M  E  V  R  W  L  L  L  G  R  V  I  Q  L  A  K  P  K  W  T  L  V  *  R :   L  V  P  K  S  S  T  R  S  T  Q  E  L  R  W  S  L  M  D  Q  S  T  S  F  *  K  R  M  I  L  L  V  F  L  R  Q  M  M  S  R  I  C  S  H  *  M  T  E  S  *  S  R :   L  Q  K  L  K  K  K  P  L  E  V  Y  C  *  L  R  Q  P  R  R  S  L  Q  L  A  R :   L  *  L  L  G  L  V  L  L  M  K  K  G  T  G  N  H  F  Q  Y  P  Q  E  I  Q  F  S  I  P  N  M  P  A  V  N  S  K  V  L  M  D  L  I  I  L  H  S  G  C  L  M  *  W  L  C  Y  L  S  G  T  I  E  L  F  R  A  K  N  F  S  R  D  L  G  R  R  K  S  C  I  Q  L  S  S  E  E  *  Y  S  L  Q  I  N  D  Q  Y  L  R  C  R  I  N  F  L  N  S  F  L  F  L  I  *  G  I  S  L  W  E  F  C  M  S  K  D  *  K  L  Q  T  M  R  D  *  Q  *  Y  L  H  N  S  H  I  G  L  C  S  S  *  C  L  S  F  L  G  S  S  C  I  S  L  V  A  S  G  S  K  R  *  L  I  S  G  S  H  F  W  K  Q  A  L  N  N  R  D  N  I  Y  R  R  K  *  K  V  E  V  Q   </second_frame>
            <third_frame>   L  S  S  I  F  P  T  I  Y  S  S  *  E  E  E  K  T  Y  P  N  S  G  T  L  L  L  L  N  S  S  S  L  H  *  F  S  F  S  D  *  V  Y  *  P  I  F  I  V  *  F  D  W  V  *  K  K  N  G  V  H  S  A  N  S  I  L  Y  L  W  Q  W  F  C  I  L  *  R  A  Q  V  H  L  H  C  K  D  R  I  F  C  S  F  E  A  Q  Q  Q  Q  V  F  *  S  S  C  C  Q  G  G  Y  H  R  S  S  *   : V  H  Y  T  *  A  F  G  R  Q  S  L  G  E  D  *  D  C  R  G  E  D  C  W  W  Y  P  T  S  S  I  S  S  V  E  T  *  W  R  *  G  G  C  C  W  G  G  S  F  S  W  Q  N  Q  S  G  H  *  C  E   : D  W  C  P  S  H  L  L  E  V  R  R  N  *  G  G  V  *  W  I  K  A  P  H  S  E  R  G  *  Y  C  W  Y  S  *  D  R  *  C  Q  G  S  A  A  I  K  *  Q  S  P  N  Q   : G  C  R  S  *  R  K  N  R  W  R  F  T  V  D  *  G  S  Q  G  E  A  F  N  W  H   : D  Y  S  C  W  A  W  S  S  *  *  R  R  E  Q  E  T  T  F  S  I  P  R  K  Y  S  S  L  F  Q  I  C  R  Q  *  I  Q  R  C  *  W  I  *  L  Y  Y  T  Q  G  V  *  C  N  G  C  A  I  L  V  G  L  L  S  Y  S  V  P  K  I  S  A  E  I  *  E  G  G  R  A  A  S  N  F  R  V  R  S  N  T  L  C  K  L  M  I  N  I  S  G  V  E  S  I  F  *  T  H  F  C  S  *  F  E  E  L  A  F  G  N  F  V  C  Q  K  I  E  N  C  R  L  *  E  I  S  N  N  I  C  I  I  H  I  L  D  C  V  Q  A  D  V  C  H  F  W  D  Q  V  V  Y  P  *  S  L  V  D  Q  R  G  S  L  F  R  D  R  I  F  G  S  K  L  *  T  I  E  T  I  Y  I  G  E  N  K  K  L  K  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0106F06.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104974" stop="105234"/>
                    <exon start="105868" stop="106047"/>
                    <exon start="106130" stop="106285"/>
                    <exon start="106667" stop="106744"/>
                    <exon start="106840" stop="107013"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>846</number_coding_nucleotides>
                  <number_encoded_amino_acids>282</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILLLCINFPFPIEYTNQFSLFNLIGFRKKMASTQLTASSISGNGFASFEGLRSTCIVKTVSFAPLKHNNSRSFSRLVVKAATTVAPKYTTLKPLGDRVLVKIKTAEEKTVGGILLPVSVQSKPNGGEVVAVGEGHSAGKTKVDISVKTGAQVIYSKYAGTEVEFDGSKHLILKEDDIVGILETDDVKDLQPLNDRVLIKVAEAEEKTAGGLLLTEAAKEKPSIGTIIAVGPGPLDEEGNRKPLSVSPGNTVLYSKYAGSEFKGADGSDYITLRVSDVMAVLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="108857" PGL_stop="107707"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108857" e_stop="108383"/>
            <exon e_start="108245" e_stop="108055"/>
            <exon e_start="107982" e_stop="107707"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.983" e_score="0.994"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="108857" e_stop="108383" e_length="475"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.983">
            <gDNA_intron_boundary i_start="108382" i_stop="108246" i_length="137"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108245" e_stop="108055" e_length="191"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="108054" i_stop="107983" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="107982" e_stop="107707" e_length="276"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108857" stop="108383"/>
              <exon start="108245" stop="108055"/>
              <exon start="107982" stop="107707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739515" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAATGTCGAATAAAACATGAACTAGTGTTCTCAAAAGGTTCAGAGCTGTCTAAGTACAAAGGCAATAATACTGAGAACTTAGAGGCAGCCTCATCGACAACATCGTATGGGGTGGATTCTAGTGGCTTCAACTTTTCATTGCCTGCATTATGTGTGGATGGTGATGTTCAATCGCATTCTAGGAACATTCTACCTTCTGCAGCAAATAATATAGATGGACTGAACCCTGATGCTTTGCTATCAAGGGATTATGATTCTGGAAAGGATATACAAAACCTATTCTCTCCTTTTGGCAATGCCCCTAGGGATATAGAAACTGAGCTGTCTGATGCTGGGATCAATTCTCAACAATTTGGGGTGCCAAACATGTCATACAAGCCAAGATGTGCCAACGATCTTGCTGTCAATGACAACGGTATTCTGAACAATAATGCATGGACGAACCAGACTCAGCGCATGAGAACGTATACAAAG : GTTCAAAAACGAGGCTCTGTGGGAAGAACTATAGACGTTACTCGCTACATAGGCTATGATGAACTAAGGCATGATCTAGCACGTATGTTTGGAATTGAGGGACAGCTTGAAGATCCTCAAAGAACTGAGTGGAAGCTTGTGTATGTTGACCATGAGAATGATATACTGCTTGTTGGTGACGATCCTTGGGA : GGAGTTTGTGAGCTGTGTTCAGAGCATCAAAATCTTGTCTTGCGCTGAAGTGCAGCAGATGAGCTTGAATGGGGATTTGGGTAATGTGCCAGTACCAAACCAAGCTAGCAGTGGAACTGACAGTGGTAATGCGTGGAAAGGACACTACGATGACAACTCAGCTGCATCATTTAATTGATGAAGGTGCTCCAATTAAATGAACTAAACCTTGCAATACATAGTCATGGAGGCTGCAAACGACTAAATCTGCTGATTCTCACTGGAGGCAACTGAGGT</gDNA_template>
            <first_frame> R  M  S  N  K  T  *  T  S  V  L  K  R  F  R  A  V  *  V  Q  R  Q  *  Y  *  E  L  R  G  S  L  I  D  N  I  V  W  G  G  F  *  W  L  Q  L  F  I  A  C  I  M  C  G  W  *  C  S  I  A  F  *  E  H  S  T  F  C  S  K  *  Y  R  W  T  E  P  *  C  F  A  I  K  G  L  *  F  W  K  G  Y  T  K  P  I  L  S  F  W  Q  C  P  *  G  Y  R  N  *  A  V  *  C  W  D  Q  F  S  T  I  W  G  A  K  H  V  I  Q  A  K  M  C  Q  R  S  C  C  Q  *  Q  R  Y  S  E  Q  *  C  M  D  E  P  D  S  A  H  E  N  V  Y  K   : G  S  K  T  R  L  C  G  K  N  Y  R  R  Y  S  L  H  R  L  *  *  T  K  A  *  S  S  T  Y  V  W  N  *  G  T  A  *  R  S  S  K  N  *  V  E  A  C  V  C  *  P  *  E  *  Y  T  A  C  W  *  R  S  L  G  :  G  V  C  E  L  C  S  E  H  Q  N  L  V  L  R  *  S  A  A  D  E  L  E  W  G  F  G  *  C  A  S  T  K  P  S  *  Q  W  N  *  Q  W  *  C  V  E  R  T  L  R  *  Q  L  S  C  I  I  *  L  M  K  V  L  Q  L  N  E  L  N  L  A  I  H  S  H  G  G  C  K  R  L  N  L  L  I  L  T  G  G  N  *  G </first_frame>
            <second_frame>  E  C  R  I  K  H  E  L  V  F  S  K  G  S  E  L  S  K  Y  K  G  N  N  T  E  N  L  E  A  A  S  S  T  T  S  Y  G  V  D  S  S  G  F  N  F  S  L  P  A  L  C  V  D  G  D  V  Q  S  H  S  R  N  I  L  P  S  A  A  N  N  I  D  G  L  N  P  D  A  L  L  S  R  D  Y  D  S  G  K  D  I  Q  N  L  F  S  P  F  G  N  A  P  R  D  I  E  T  E  L  S  D  A  G  I  N  S  Q  Q  F  G  V  P  N  M  S  Y  K  P  R  C  A  N  D  L  A  V  N  D  N  G  I  L  N  N  N  A  W  T  N  Q  T  Q  R  M  R  T  Y  T  K  :  V  Q  K  R  G  S  V  G  R  T  I  D  V  T  R  Y  I  G  Y  D  E  L  R  H  D  L  A  R  M  F  G  I  E  G  Q  L  E  D  P  Q  R  T  E  W  K  L  V  Y  V  D  H  E  N  D  I  L  L  V  G  D  D  P  W  E :   E  F  V  S  C  V  Q  S  I  K  I  L  S  C  A  E  V  Q  Q  M  S  L  N  G  D  L  G  N  V  P  V  P  N  Q  A  S  S  G  T  D  S  G  N  A  W  K  G  H  Y  D  D  N  S  A  A  S  F  N  *  *  R  C  S  N  *  M  N  *  T  L  Q  Y  I  V  M  E  A  A  N  D  *  I  C  *  F  S  L  E  A  T  E   </second_frame>
            <third_frame>   N  V  E  *  N  M  N  *  C  S  Q  K  V  Q  S  C  L  S  T  K  A  I  I  L  R  T  *  R  Q  P  H  R  Q  H  R  M  G  W  I  L  V  A  S  T  F  H  C  L  H  Y  V  W  M  V  M  F  N  R  I  L  G  T  F  Y  L  L  Q  Q  I  I  *  M  D  *  T  L  M  L  C  Y  Q  G  I  M  I  L  E  R  I  Y  K  T  Y  S  L  L  L  A  M  P  L  G  I  *  K  L  S  C  L  M  L  G  S  I  L  N  N  L  G  C  Q  T  C  H  T  S  Q  D  V  P  T  I  L  L  S  M  T  T  V  F  *  T  I  M  H  G  R  T  R  L  S  A  *  E  R  I  Q  R :   F  K  N  E  A  L  W  E  E  L  *  T  L  L  A  T  *  A  M  M  N  *  G  M  I  *  H  V  C  L  E  L  R  D  S  L  K  I  L  K  E  L  S  G  S  L  C  M  L  T  M  R  M  I  Y  C  L  L  V  T  I  L  G   : R  S  L  *  A  V  F  R  A  S  K  S  C  L  A  L  K  C  S  R  *  A  *  M  G  I  W  V  M  C  Q  Y  Q  T  K  L  A  V  E  L  T  V  V  M  R  G  K  D  T  T  M  T  T  Q  L  H  H  L  I  D  E  G  A  P  I  K  *  T  K  P  C  N  T  *  S  W  R  L  Q  T  T  K  S  A  D  S  H  W  R  Q  L  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0106F06.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108856" stop="108383"/>
                    <exon start="108245" stop="108055"/>
                    <exon start="107982" stop="107805"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>840</number_coding_nucleotides>
                  <number_encoded_amino_acids>280</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ECRIKHELVFSKGSELSKYKGNNTENLEAASSTTSYGVDSSGFNFSLPALCVDGDVQSHSRNILPSAANNIDGLNPDALLSRDYDSGKDIQNLFSPFGNAPRDIETELSDAGINSQQFGVPNMSYKPRCANDLAVNDNGILNNNAWTNQTQRMRTYTKVQKRGSVGRTIDVTRYIGYDELRHDLARMFGIEGQLEDPQRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSCAEVQQMSLNGDLGNVPVPNQASSGTDSGNAWKGHYDDNSAASFN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 422 chains have been computed
$ 
$ memory statistics:
$ 434968 bytes spliced alignments in total
$ 199 spliced alignments have been stored
$ 2185 bytes was the average size of a spliced alignment
$ 25024 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1787 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 485 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-07 04:20:40
-->
