<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-06 20:33:29"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339767" ref_strand="+" ref_description="SGN-U339767        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 4e-13, score=72) genbank/nr: gi|47824956|gb|AAT38730.1| putative reverse transcriptase [Solanum demissum] (evalue: 4e-93, score=343)">
      <seq>ctctatgactctagtacctagcaaataggagcaaaatatctcaaaagcaaagactactgcgaggagttcatgctcagtcactgtgtagttcttctgggcttcatttagggctttactagcatagtaaattgggtgaaggattttgtttcttctctgtcccaatactacaccaagagccaccccactagcatcgcacattacctcaaatggacttttccaatccggagaaataatgataggtgcagacactaacttctcttttagctcactgaatgctttaagacaggactcatcaaaacaaaatttacattctttcttcagtaatttgcacaatgggtgtgcaatctttgaaaagtctttgatgaatctccgataaaaacctgcatgcccaagaaagcttctcacacctttcatagagatcggtgggggaagtctctctattacctcaactttagctcgatcaacctctattcccttttctgaaatgcgatgacccaacacaatacctttttttaccatgaaatgacacttttcccagtttagtaccagattgcagtcttcacatctcttaagaacctcagattaattggtcaagcatcgctcaattgaatcaccaaccacagaaaaatcatccataaaaacctctatagtatcctccaccatgtcagaaaatattgacatcatatatctctgaaaggttgcgggtgcattgcacaacctaaatggcattcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0108F03.2" temp_strand="-" temp_description="C07HBa0108F03.2  AC212629.2 htgs_phase:2 submitted_to_sgn_as:gi|205277501|gb|AC212629.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0108F03, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5681" stop="4348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5381" g_stop="4648" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="734" r_length="734" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0108F03.2" gen_strand="-" ref_id="SGN-U339767" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0108F03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5381" e_stop="4648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTATAACTCTAGTACCTAGCAAATAGGAGCGAAATTTCTCAAAAGCAAAGACTACTGCGAGGAGTTCTTGCTCAGTCACTGTGTAGTTCTTCTGGGCTTCATTTAGGGCTTTACTAGCATTGTAAATTGGGTGAAGGATTTTGTTTCTTCTCTGTCCCAATACTACACCAAGAGCCACCCCACTAGCATCGCACATTACCTCAAATGGACTGTTCTAATCTGGAGAAATAATGATAGGCGCAGACACTAACTTCTCTTTTAGCTCACCGAATGCTTTAAGACAGGATTCATCAAAACAAAATTTACATTCTTTCTCCAGCAATTTGCACAATGGGTGTGCAATCTTTGAAAAGTCTTTGATGAATCTCCGATAAAAACCTGCATGCCCAAGAAAGCTTCTCACACCTTTCACAGAGATCGGTGGGGGAAGTCTCTTTATTACCTCAACTTTAGCTCGATCAACCTCTATGCCCTTTTCTAAAATGCGATGACCCAACACAATACCCTCTTTCACCATGAAATGACACTTTTCCCAGTTTAGTACCAAATTGCAGTCTTCACATCTCTTAAGAACCTCAGACAAATTGGTCAAACACCGCTCGAATGAATCACCAACCACAGAGAAATCATCCATAAAAACCTCTATAGTATCCTCCACCATGTCAGAAAATATTGACATCATACATCTCTGAAAGGTTGCGGGTGCATTGCACAACCCAAACGACATTTTTC</genome_strand>
        <mrna_strand>CTCTATGACTCTAGTACCTAGCAAATAGGAGCAAAATATCTCAAAAGCAAAGACTACTGCGAGGAGTTCATGCTCAGTCACTGTGTAGTTCTTCTGGGCTTCATTTAGGGCTTTACTAGCATAGTAAATTGGGTGAAGGATTTTGTTTCTTCTCTGTCCCAATACTACACCAAGAGCCACCCCACTAGCATCGCACATTACCTCAAATGGACTTTTCCAATCCGGAGAAATAATGATAGGTGCAGACACTAACTTCTCTTTTAGCTCACTGAATGCTTTAAGACAGGACTCATCAAAACAAAATTTACATTCTTTCTTCAGTAATTTGCACAATGGGTGTGCAATCTTTGAAAAGTCTTTGATGAATCTCCGATAAAAACCTGCATGCCCAAGAAAGCTTCTCACACCTTTCATAGAGATCGGTGGGGGAAGTCTCTCTATTACCTCAACTTTAGCTCGATCAACCTCTATTCCCTTTTCTGAAATGCGATGACCCAACACAATACCTTTTTTTACCATGAAATGACACTTTTCCCAGTTTAGTACCAGATTGCAGTCTTCACATCTCTTAAGAACCTCAGATTAATTGGTCAAGCATCGCTCAATTGAATCACCAACCACAGAAAAATCATCCATAAAAACCTCTATAGTATCCTCCACCATGTCAGAAAATATTGACATCATATATCTCTGAAAGGTTGCGGGTGCATTGCACAACCTAAATGGCATTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346006" ref_strand="+" ref_description="SGN-U346006        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: Integrase,(evalue: 9e-17, score=90.5)">
      <seq>ggggatttagtgcttctattcaattccagattgcgcttgtttccaggcaaactcaagtccaaatggactggtccttacacggttacccaactattccctcatggagcagttgagttggaaacgaaggagggtgtgcggttcaaggtgaatggacagcgcataaaaatctatctcggacatgctgaatcggcgaatgaagtgatcgaggcataccatcttgatgaagtctgagtaatcaagtggccccagtcgtgccgcgacattaaatcaggcgcttgttgggaggcaacccaatacttatcgtctttttaataatggtagcatttttttctataaatgggttttaaatttgcaggcacatcaccaagaaattctgcagaaaactactccgcagtagccactgacggatacaacaacggaccgtcgtatgcatccgtcacaccaggtatgtatttctgtcatttttgaaattagggcgcatacgacggaacctacgatggggcgtcgcaagtgcgatggaccgtcgtcggggaaccgttgcgcgattaatgaaatctnaccgacccacccggctggaccttttcaaatctgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0108F03.2" temp_strand="+" temp_description="C07HBa0108F03.2  AC212629.2 htgs_phase:2 submitted_to_sgn_as:gi|205277501|gb|AC212629.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0108F03, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="6386" stop="7621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6685" g_stop="7108" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7109" i_stop="7146" i_length="38">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7147" g_stop="7321" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="594" r_length="172" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0108F03.2" gen_strand="+" ref_id="SGN-U346006" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0108F03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6685" e_stop="7108"/>
          <exon e_start="7147" e_stop="7321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGATTTAGTGCTTCTATTCAATTCCAGATTGCGCTTGTTTTCAGGCAAACTCAAGTCCAAATGGACTGGTCCTTACACGGTTACCCAACTATTCCCTCATGGAGCAGTTGAGTTGGAAACTAAGGAGGGTGTGAAGTTCAAGGTGAATGGACAGCGCATAAAAATCTATCTCGGGCATGCTGAATCGGCGAATGAAGTGATCGAGGCATACCATCTTGATGAAGTCTGAGTAATCAAGTGGCCCCAGTCGTGCCGCGACATTAAATCAGGCGCTTGTTGGGAGGCAACCCAATACTTATCATCTTTTTAATAATGGTAGTATTTTTTTTTCTATAAATGGGTTTTAAATTTGCAGGCACATCACTAGGAAATTCTGCAGAAAACTACTCCGCAGTAGCCACTGACGGATACAACAACGGACCGTTGCGAATGCAACGGACCGTTGCGAATGCAACGGACCGTCATATGCATCCGTCACACCAGGTACGTATTTCTGTCATTTTTGAAATTAGGGCACACACGACGGAACCTACAACGGGGCGTCGCAAGTGCGACAGACCGTCGTCGGGGAACTGTCGCGCGATTAATGAAATCTACCCGACCCGACCCGGCTGGACCCTTTTCAAAATCTGACC</genome_strand>
        <mrna_strand>GGGGATTTAGTGCTTCTATTCAATTCCAGATTGCGCTTGTTTCCAGGCAAACTCAAGTCCAAATGGACTGGTCCTTACACGGTTACCCAACTATTCCCTCATGGAGCAGTTGAGTTGGAAACGAAGGAGGGTGTGCGGTTCAAGGTGAATGGACAGCGCATAAAAATCTATCTCGGACATGCTGAATCGGCGAATGAAGTGATCGAGGCATACCATCTTGATGAAGTCTGAGTAATCAAGTGGCCCCAGTCGTGCCGCGACATTAAATCAGGCGCTTGTTGGGAGGCAACCCAATACTTATCGTCTTTTTAATAATGGTAGCA--TTTTTTTCTATAAATGGGTTTTAAATTTGCAGGCACATCACCAAGAAATTCTGCAGAAAACTACTCCGCAGTAGCCACTGACGGATACAACAACGGACC......................................GTCGTATGCATCCGTCACACCAGGTATGTATTTCTGTCATTTTTGAAATTAGGGCGCATACGACGGAACCTACGATGGGGCGTCGCAAGTGCGATGGACCGTCGTCGGGGAACCGTTGCGCGATTAATGAAATCTNACCGACCC-ACCCGGCTGGA-CCTTTTC-AAATCTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341497" ref_strand="+" ref_description="SGN-U341497        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ccccctcgagagagtgccaagaggcgtaggggccgatcagaggatgaggcacaagcaaagaagaaggagcgccgagagatggaggctgcgaggagagcctcgctgagacggaggcacaccaaatcagagcatcgcagatagcggatggggcgtctagctcccgcactgtagagatagcaagaggcactactgatggtgcggttgttgctgaggacatcactgagggtgtccagattgctgaggacaccactgagggtgtccagattgcagaggatgtgggttccaggaaaccggacccaccatcttgttaaatcgacggtgctttgcgccacaggtttgcttcacctaccactctaatatttagattttttatgcattggggacagttgcatgcttttttgttgggggtggggtaaatggaaagtgagtgttagggtgaagtctgagtagcccaactcactatcctcttttggggttttcttgcctgtgttctttttccccaaaagactgattactttttttgttgaaccgacacgttatatatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0108F03.2" temp_strand="+" temp_description="C07HBa0108F03.2  AC212629.2 htgs_phase:2 submitted_to_sgn_as:gi|205277501|gb|AC212629.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0108F03, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="10135" stop="11284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10434" g_stop="10984" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0108F03.2" gen_strand="+" ref_id="SGN-U341497" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0108F03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10434" e_stop="10984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCTCGAGAGAGTGCCAAGAGGCGTAGGGGTCGATCAGAGGATGAGGCGCGATCAAGGAAGAAGGAGCGCCGAGAGATGGAGGCCGCGAGGAGAGCCTCACTTGCTGAGGCGGAGGCACACCAGATAAGAGCATCGCAGATAGCGGCTGGGGCGTCTAGCTCCCGCACTGCAGAGACAGCAGGGGGCACTACTGATGGTGCAGTTATTGCTGAGGACATCACTGAGGGTGTCCAGATTGCTGAGGACACCACTGAGGGTGTCAAGATTACAGAGGATGTGGGTTCTGGGAAACCAGACCCACCAGCTTGTTGAA-CGACGGCGCTATGCGCCACAGGTTTGCTTCACCTACCCATCTAATCTTTAGATTTTTTTATGCATTGGGAACAATTGCATGTTTTTTTGTTGGGGGTGGGGTAAATGGAAAGTGAGTAGTAGGGTGAAGTCTGAGTAACCCAACTCACTATCCTCTTTTGGGGTTTTCTTGCCTGTGTTCTTTTTCCCCAAAAGACTGATTACTTTTTCTGTTGAACCGGCACGTTATATCTTGT</genome_strand>
        <mrna_strand>CCCCCTCGAGAGAGTGCCAAGAGGCGTAGGGGCCGATCAGAGGATGAGGCACAAGCAAAGAAGAAGGAGCGCCGAGAGATGGAGGCTGCGAGGAGAGCCT--C--GCTGAGACGGAGGCACACCAAATCAGAGCATCGCAGATAGCGGATGGGGCGTCTAGCTCCCGCACTGTAGAGATAGCAAGAGGCACTACTGATGGTGCGGTTGTTGCTGAGGACATCACTGAGGGTGTCCAGATTGCTGAGGACACCACTGAGGGTGTCCAGATTGCAGAGGATGTGGGTTCCAGGAAACCGGACCCACCATCTTGTTAAATCGACGGTGCTTTGCGCCACAGGTTTGCTTCACCTACCACTCTAATATTTAGA-TTTTTTATGCATTGGGGACAGTTGCATGCTTTTTTGTTGGGGGTGGGGTAAATGGAAAGTGAGTGTTAGGGTGAAGTCTGAGTAGCCCAACTCACTATCCTCTTTTGGGGTTTTCTTGCCTGTGTTCTTTTTCCCCAAAAGACTGATTACTTTTTTTGTTGAACCGACACGTTATATATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334737" ref_strand="+" ref_description="SGN-U334737        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>cgagggtctttgttctaatacacttcaactcttggaatttgggtactgggatcacttctctgaacttcacgacgaacctgcaggacggaccgtcagatccacgacggaccgtcacaagcttcgtaatcccacacttagtcagacttccctatcttccttcagcagctgcactacgcttccacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtttcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaacaaagagtaacttatataaaaattagcacaaaaaggcttttggacacactaagcttaaggaaaaagtattaataataccgtgaaaccacggtatatcaacaccctcaacttaaattagttgtttgtcctcaagcgacgcactatgactcactacacaatctttgtacaatagtatccatgttttatcctttgcaatcatttggctatcaatcccgattaatctcatcaaatctatgcatgctatcactattaggtttgaattttgtgggatcagaatatgacacagacttaccatgcactaacacctatcctcttcaatttctcaccgaggtgctaacaattctagtattgcaactagtgtcctcactataagacaaaatcctcctttttcacacagtgattttagtttgagtataaggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0108F03.2" temp_strand="-" temp_description="C07HBa0108F03.2  AC212629.2 htgs_phase:2 submitted_to_sgn_as:gi|205277501|gb|AC212629.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0108F03, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="13018" stop="11703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12718" g_stop="12003" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0108F03.2" gen_strand="-" ref_id="SGN-U334737" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0108F03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12718" e_stop="12003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGGTC-TCGTTTCAAAATACTTCAACTCTTGGAATCTGGGTACTGGGATCACTTCTCTGATCTTCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTGCCACCTACGGACCGTCACAAGCACGACGGACCATCATAAGCTCCGTAGGTGGTCTCTTCTGCAATT-TTCGCTCAAAATCTCCGCATTCAGCTTTGGACAAATTTCCTGCAAAACAAAGAGAAACTTATATCAAAATTAGCACAAACAAGGCTTTCGGACACACTAAACTTAAGGAAAAAGTATTAATTATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTCGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATTCATGTTTTATCCTTTGCAATCATTTGGATATCAATCCCGATTAATCCCATCAAATCTATGCATGTTATCACTATTAGGCTTGAATTTTGTGGGATTCGAACATGACACAGACTCACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCCGGTATTGCAACTAGTGTCCTCACTTTTAGAACAAAATCCTCATTTTTCACACAATGATTTCAGTTTGAGTATAAGGATTAC</genome_strand>
        <mrna_strand>CGAGGGTCTTTGTTCTAATACACTTCAACTCTTGGAATTTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCAGATCCACGACGGACCGTCACAAGCTTCGTAATCCCACACTTAGTCAGACTTCCCTATCTTCCTTCAGCAGCTGCACTACGCTTCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTTTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGTAACTTATATAAAAATTAGCACAAA-AAGGCTTTTGGACACACTAAGCTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTAGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGTTTGAATTTTGTGGGATCAGAATATGACACAGACTTACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTAGTATTGCAACTAGTGTCCTCACTATAAG-ACAAAATCCTCCTTTTTCACACAGTGATTTTAGTTTGAGTATAAGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344827" ref_strand="+" ref_description="SGN-U344827        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|48210051|gb|AAT40550.1| putative receptor kinase [Solanum demissum] (evalue: 1e-119, score=432)">
      <seq>aaagtacgaatagaaacatcaaactgattttgtatttgaactcatcaaattctgtctgagcaatatgagcattattggatgtttgattaggatgagcaccatatgctactggtggagatgactgtgtacttgcgcgatttcgaaggaactcattatattcgttttgaacaagaggatcataactgggtggtggaccatgcaaaatatgacatatgtcacgagtgtatccagacttatgacaatgactatacttggattgaggtttcccaaaacgtcgtcccccctaccgattctccgtagactgatatgtacgcttttcaaaggtttgagatgcgagaatagaggagtcaacagtgggtgatgaaacgactttgtgactaggaggtgccgcaagacgaaggaggcgagagaataattcatcgattgtagaaattgtagggctagctaaaatctgatcacgcataaaatcgttatcaggaggaagtccagcaagcgtaagaactagaaacaatgtttttctatgttcttgttgtttttccacatccgtagttactggcatcaacatgtcgaattcctccatgactgcctgtacctgtcccaagtaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0108F03.2" temp_strand="+" temp_description="C07HBa0108F03.2  AC212629.2 htgs_phase:2 submitted_to_sgn_as:gi|205277501|gb|AC212629.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0108F03, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="31466" stop="33476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31766" g_stop="31802" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31803" i_stop="32616" i_length="814">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32617" g_stop="33176" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="607" r_length="570" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0108F03.2" gen_strand="+" ref_id="SGN-U344827" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0108F03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31766" e_stop="31802"/>
          <exon e_start="32617" e_stop="33176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTACGAATACAAACACCAAACTGATTTTGTATTTCAGCAAAGAAACTTTTGAAAATAGAAAATAACTCAGAACGATCTTTAATTTAAAAAACCCAAGTACATCTTGAATAATCATCAACGAAACTAACAAAATAACGAAATCCTAAGGTGGAACTGACTCTACTAGAACCCCAAATATCAGAATGAACTAATGAAAAAATAGACTTTGAACGACCCTCAGTACTACGAGAAAACGTAGCACGAGTGTGTTTCCCAAGTTGACACGACTCACAATCTAATGTAGATAAACTAGACAAACTGGGAACTATCTTTTGCAGTTTGGATAGATTCGGATGTCCCAGACGTTTGTGAATTAGATCTGGGGATCTGTAACGGAGCATGCTGTCAAGGAATTTGAAGGGGTAAGATAGTATAGGCCTTGTGATTCATGTCCTGTTCCAATCATCTGTCCCGTACTGCGGTCCTGTATGAGAATAAAATCATCGAAAAAAGATGCTACAATGTAGGATTTCGTCAAACGACTAACAGATGCTAGATTAAAATGAGAACCAGGAACATAAAAACAGAGTATAGGGTGACAGAAGATAGGGGTTTGGCTTTTCCAACCTCTTTTGGTTTTGTCTGAATCCCATTGGCAAAAGTAATAGCTGGAAGAGATTGCGAATAAACAATATCGGATAAAGTGATTTATTACCAGAAATATGATCAGAAGCCCCAGAGTCCACGACCCATGTTCCTACAGTACTAGATTGCGACACACAAGCAAAAGAATTACCCGTGACAGACACATCAGGTTGTGCAACCGAAAATACATGTGGAGACGTTTGTTTATTTGCACGATACTGAAGGAACTCATCATATTCTATCTGAGCAATATAAGCATTATTGGATGGTTGATTAAGTTGAGCACCATATACTACTGGTGGAGAT-ACT-TG--C----GCAATTTCGAAGGAACTCATTATGTTCCTTTAAAACAAGAGGATCATAACTGGGTGGTGGACCATGCAAAATATGACATATGTCACGAGTGTGCCCAGACTTATGACAATGACTACACTTGGATCGAGGTTCCCCGAAACGTCCTCCCCCTCACCGATTCTGCGTAGACTGATATGTACGCTTTCCAAAGGTTTGAGATGCGAGAATAGAGGAGTCAACAGTGGGTAATGAAACGATATTGTGACTAGGAGGTGCCGCAAGACGAAGGAGGCGAGAGAATAATTCATCGATTGTAGGAACTGTAGGGCTAGCTAAAATCTGATCA--CACAGAATCATTATCAGGAGGAAGTCCAGCAAGAGTAAGAACTAGAAACAATGTTTGTCTATGTTCTTGTTGTTTTTCCACATCTGTAGTTACTGGCATCAACATATCGAATTCCTCTATGACTGCCTGTACCTGTCCCAAGTAAGT</genome_strand>
        <mrna_strand>AAAGTACGAATAGAAACATCAAACTGATTTTGTATTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTCATCAAATTCTGTCTGAGCAATATGAGCATTATTGGATGTTTGATTAGGATGAGCACCATATGCTACTGGTGGAGATGACTGTGTACTTGCGCGATTTCGAAGGAACTCATTATATTCGTTTTGAACAAGAGGATCATAACTGGGTGGTGGACCATGCAAAATATGACATATGTCACGAGTGTATCCAGACTTATGACAATGACTATACTTGGATTGAGGTTTCCCAAAACGTCGTCCCCCCTACCGATTCTCCGTAGACTGATATGTACGCTTTTCAAAGGTTTGAGATGCGAGAATAGAGGAGTCAACAGTGGGTGATGAAACGACTTTGTGACTAGGAGGTGCCGCAAGACGAAGGAGGCGAGAGAATAATTCATCGATTGTAGAAATTGTAGGGCTAGCTAAAATCTGATCACGCATAAAATCGTTATCAGGAGGAAGTCCAGCAAGCGTAAGAACTAGAAACAATGTTTTTCTATGTTCTTGTTGTTTTTCCACATCCGTAGTTACTGGCATCAACATGTCGAATTCCTCCATGACTGCCTGTACCTGTCCCAAGTAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0108F03.2" temp_strand="+" temp_description="C07HBa0108F03.2  AC212629.2 htgs_phase:2 submitted_to_sgn_as:gi|205277501|gb|AC212629.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0108F03, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="92745" stop="93522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93045" g_stop="93221" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0108F03.2" gen_strand="+" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0108F03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93045" e_stop="93221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTCCCATACAATGATTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTGTTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAGTGACCACCAAACTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATTGTCCTTTCAGACTGGCCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0108F03.2" temp_strand="+" temp_description="C07HBa0108F03.2  AC212629.2 htgs_phase:2 submitted_to_sgn_as:gi|205277501|gb|AC212629.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0108F03, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="94226" stop="95538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94526" g_stop="95238" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0108F03.2" gen_strand="+" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0108F03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94526" e_stop="95238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAGTAACTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCGAAATATGGCTTAAAAATCCTGTTCATCAAGCGCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATAACTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTATCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGATGCCTTTGTTCAATAACTC-TTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335935" ref_strand="+" ref_description="SGN-U335935        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-78, score=295)">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0108F03.2" temp_strand="+" temp_description="C07HBa0108F03.2  AC212629.2 htgs_phase:2 submitted_to_sgn_as:gi|205277501|gb|AC212629.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0108F03, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="94746" stop="96004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95046" g_stop="95704" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0108F03.2" gen_strand="+" ref_id="SGN-U335935" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0108F03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95046" e_stop="95704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTATCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGATGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGTAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCCTAGCACAAAGAAAGGAGACGATGCGGACCGGATTGGGAGTGTAGTCACCCTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0108F03.2" temp_strand="-" temp_description="C07HBa0108F03.2  AC212629.2 htgs_phase:2 submitted_to_sgn_as:gi|205277501|gb|AC212629.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0108F03, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="96842" stop="94834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96542" g_stop="96356" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96355" i_stop="95612" i_length="744">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95611" g_stop="95098" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="694" r_length="507" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0108F03.2" gen_strand="-" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0108F03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96542" e_stop="96356"/>
          <exon e_start="95611" e_stop="95098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTAAGTTCCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCGGATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGTGGATTTCGGCCTTACAGGTAGCGGAAACGGCAAAATCCTTCCAAGAAGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCCCAACATCGATATCAAAAAGGCCTCGAAAGGGAGGTGAGTTTAATGGTTTTTACACTAGGGGACAGGGTTCGGAAAGTTACTCAGTTCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGACCACCTCAGACCGGTCAACACTTCTCCGAGGGGCCTAGGATTGACTCCAGATAATGTTATGGATGTGGGGAGATTGGACATATTAGGAAAAATTGTCCCAGACAAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAGAACGGCCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACAGACAGACAAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTACTCATTTGCTAATGGTCTAAATTTACATTGTGAATTTCTTGATATGCCTATTAGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGACCCGTTAGTGTGGGAGGGTGACTACACTCCCAATCCGGTCCGCATCGTCTCCTTTCTTTGTGCTAGGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTACGATTGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTATTGAACAAAGGCATCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0108F03.2" temp_strand="+" temp_description="C07HBa0108F03.2  AC212629.2 htgs_phase:2 submitted_to_sgn_as:gi|205277501|gb|AC212629.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0108F03, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="94815" stop="96172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95115" g_stop="95872" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0108F03.2" gen_strand="+" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0108F03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95115" e_stop="95872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGATGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGTAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCCTAGCACAAAGAAAGGAGACGATGCGGACCGGATTGGGAGTGTAGTCACCCTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACTAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGTAAGATACATAAGAAAACGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATC</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0108F03.2" temp_strand="+" temp_description="C07HBa0108F03.2  AC212629.2 htgs_phase:2 submitted_to_sgn_as:gi|205277501|gb|AC212629.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0108F03, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="95218" stop="96144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95518" g_stop="95848" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0108F03.2" gen_strand="+" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0108F03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95518" e_stop="95848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACTAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGTAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335930" ref_strand="+" ref_description="SGN-U335930        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 7e-35, score=150)">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0108F03.2" temp_strand="+" temp_description="C07HBa0108F03.2  AC212629.2 htgs_phase:2 submitted_to_sgn_as:gi|205277501|gb|AC212629.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0108F03, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="95425" stop="96583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95725" g_stop="96283" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0108F03.2" gen_strand="+" ref_id="SGN-U335930" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0108F03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95725" e_stop="96283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGTAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTCTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTATCTGGAGTCAATCCTAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACTTTCCGAACCCTGTCCCCTAGTGTAAAAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317064" ref_strand="+" ref_description="SGN-U317064        Tomato 200607 #1 [6 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 5e-64, score=248)">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccgggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagctgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgtcgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0108F03.2" temp_strand="+" temp_description="C07HBa0108F03.2  AC212629.2 htgs_phase:2 submitted_to_sgn_as:gi|205277501|gb|AC212629.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0108F03, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="95429" stop="97465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95729" g_stop="97165" g_length="1437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1437" r_length="1437" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0108F03.2" gen_strand="+" ref_id="SGN-U317064" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>1437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0108F03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95729" e_stop="97165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGTAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTCTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTATCTGGAGTCAATCCTAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACTTTCCGAACCCTGTCCCCTAGTGTAAAAACCATTAAACTCACCTCCCTTTCGAGGCCTTTTTGATATCGATGTTGGGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTTCCGCTACCTGTAAGGCCGAAATCCACAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCCCTTTTCCTATCCTTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCACGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCGAACCGTTTGACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTAAAGATCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACCTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATACATGCGGAGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCAT-CCTCCCCTTCTCTTATTACTTCCTTAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCGGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335932" ref_strand="+" ref_description="SGN-U335932        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|2190718|gb|AAB64397.1| beta-galactosidase [unidentified cloning vector](evalue: 3e-14, score=80.1)">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0108F03.2" temp_strand="+" temp_description="C07HBa0108F03.2  AC212629.2 htgs_phase:2 submitted_to_sgn_as:gi|205277501|gb|AC212629.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0108F03, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="96504" stop="97537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96804" g_stop="97236" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0108F03.2" gen_strand="+" ref_id="SGN-U335932" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0108F03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96804" e_stop="97236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTAAAGATCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACCTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATACATGCGGAGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTTAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAAAGAACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGTTGTTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335073" ref_strand="+" ref_description="SGN-U335073        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0108F03.2" temp_strand="-" temp_description="C07HBa0108F03.2  AC212629.2 htgs_phase:2 submitted_to_sgn_as:gi|205277501|gb|AC212629.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0108F03, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="97828" stop="96943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97528" g_stop="97243" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0108F03.2" gen_strand="-" ref_id="SGN-U335073" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0108F03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97528" e_stop="97243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTATTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACATCAACACCGGCCAGACAAGAAACAAGTGAGCCAGCCATTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340464" ref_strand="+" ref_description="SGN-U340464        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>aaatggagaaaccaaccctgcaactcttggccagtagctgcaaataatttggggagtaatctccttgtttggtgtgttaattctttagaacacccttgttaattatccattaattttaagaagggggcgtgaccagttgcttacgaagtttgttttagttattgaatgtgctaagtatgaatggaaaccataatcggattattagtggtgtcgtgttggtgcttgggctgttttgattaaagcaaactgcaggaaaattctattttggcattatgtatatgctgaatgtgattatgagtatatactccaacggatgaatacgattaggtaaatgtgttgcgaattataaaacgagttatcgctcggtgtgtcggtgcttcgctgctatagttgcccagacggaactgttttggggagggggctgcctaatgtgatacttcgggttatatgtgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0108F03-jRC5N/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0108F03.2" temp_strand="-" temp_description="C07HBa0108F03.2  AC212629.2 htgs_phase:2 submitted_to_sgn_as:gi|205277501|gb|AC212629.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0108F03, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="134716" stop="133663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134416" g_stop="133963" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0108F03.2" gen_strand="-" ref_id="SGN-U340464" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0108F03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134416" e_stop="133963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGAGAAACCAACCCTG-AACTCTTGGCCAGCAGCTGCAAATAATTTGGTTAGTAATCTCCTTGTTTGGTGTGTTAATTCTTTAGAATACCCTTGTTAATTATCCATTAATTTTAAGAAGGGGGCGTGACCAGTAGCTTAGGAAGTTTGTTTTAGTTATTGAATGTACTAAGTATGAATGGAAACCATAATCGGATTATTAGTGGTGTCGTGTTGGTGCTTGGGCTGTTTTGATTAAAGCAAACTGCAGGAAAATTCTGTTTTGGCATTATGTATATGTTGAATGTGATTATGAGTATATACTCCAAAGGATGAATACGATAAGGTAGATGTGTTACGAATTATAAAACGAGTTATCACTCGGTGTGTCGTTGCTTCGCTGATATAGTTGCCGAGATGGAACTGTTTTGGGGAGGGGGCTGTTTAATATGATTCTTTGGGTTATATGTGTTA</genome_strand>
        <mrna_strand>AAATGGAGAAACCAACCCTGCAACTCTTGGCCAGTAGCTGCAAATAATTTGGGGAGTAATCTCCTTGTTTGGTGTGTTAATTCTTTAGAACACCCTTGTTAATTATCCATTAATTTTAAGAAGGGGGCGTGACCAGTTGCTTACGAAGTTTGTTTTAGTTATTGAATGTGCTAAGTATGAATGGAAACCATAATCGGATTATTAGTGGTGTCGTGTTGGTGCTTGGGCTGTTTTGATTAAAGCAAACTGCAGGAAAATTCTATTTTGGCATTATGTATATGCTGAATGTGATTATGAGTATATACTCCAACGGATGAATACGATTAGGTAAATGTGTTGCGAATTATAAAACGAGTTATCGCTCGGTGTGTCGGTGCTTCGCTGCTATAGTTGCCCAGACGGAACTGTTTTGGGGAGGGGGCTGCCTAATGTGATACTTCGGGTTATATGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>16</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="5381" PGL_stop="4648"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5381" e_stop="4648"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="5381" e_stop="4648" e_length="734"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5381" stop="4648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339767" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACTATAACTCTAGTACCTAGCAAATAGGAGCGAAATTTCTCAAAAGCAAAGACTACTGCGAGGAGTTCTTGCTCAGTCACTGTGTAGTTCTTCTGGGCTTCATTTAGGGCTTTACTAGCATTGTAAATTGGGTGAAGGATTTTGTTTCTTCTCTGTCCCAATACTACACCAAGAGCCACCCCACTAGCATCGCACATTACCTCAAATGGACTGTTCTAATCTGGAGAAATAATGATAGGCGCAGACACTAACTTCTCTTTTAGCTCACCGAATGCTTTAAGACAGGATTCATCAAAACAAAATTTACATTCTTTCTCCAGCAATTTGCACAATGGGTGTGCAATCTTTGAAAAGTCTTTGATGAATCTCCGATAAAAACCTGCATGCCCAAGAAAGCTTCTCACACCTTTCACAGAGATCGGTGGGGGAAGTCTCTTTATTACCTCAACTTTAGCTCGATCAACCTCTATGCCCTTTTCTAAAATGCGATGACCCAACACAATACCCTCTTTCACCATGAAATGACACTTTTCCCAGTTTAGTACCAAATTGCAGTCTTCACATCTCTTAAGAACCTCAGACAAATTGGTCAAACACCGCTCGAATGAATCACCAACCACAGAGAAATCATCCATAAAAACCTCTATAGTATCCTCCACCATGTCAGAAAATATTGACATCATACATCTCTGAAAGGTTGCGGGTGCATTGCACAACCCAAACGACATTTTTC</gDNA_template>
            <first_frame> H  Y  N  S  S  T  *  Q  I  G  A  K  F  L  K  S  K  D  Y  C  E  E  F  L  L  S  H  C  V  V  L  L  G  F  I  *  G  F  T  S  I  V  N  W  V  K  D  F  V  S  S  L  S  Q  Y  Y  T  K  S  H  P  T  S  I  A  H  Y  L  K  W  T  V  L  I  W  R  N  N  D  R  R  R  H  *  L  L  F  *  L  T  E  C  F  K  T  G  F  I  K  T  K  F  T  F  F  L  Q  Q  F  A  Q  W  V  C  N  L  *  K  V  F  D  E  S  P  I  K  T  C  M  P  K  K  A  S  H  T  F  H  R  D  R  W  G  K  S  L  Y  Y  L  N  F  S  S  I  N  L  Y  A  L  F  *  N  A  M  T  Q  H  N  T  L  F  H  H  E  M  T  L  F  P  V  *  Y  Q  I  A  V  F  T  S  L  K  N  L  R  Q  I  G  Q  T  P  L  E  *  I  T  N  H  R  E  I  I  H  K  N  L  Y  S  I  L  H  H  V  R  K  Y  *  H  H  T  S  L  K  G  C  G  C  I  A  Q  P  K  R  H  F   </first_frame>
            <second_frame>  T  I  T  L  V  P  S  K  *  E  R  N  F  S  K  A  K  T  T  A  R  S  S  C  S  V  T  V  *  F  F  W  A  S  F  R  A  L  L  A  L  *  I  G  *  R  I  L  F  L  L  C  P  N  T  T  P  R  A  T  P  L  A  S  H  I  T  S  N  G  L  F  *  S  G  E  I  M  I  G  A  D  T  N  F  S  F  S  S  P  N  A  L  R  Q  D  S  S  K  Q  N  L  H  S  F  S  S  N  L  H  N  G  C  A  I  F  E  K  S  L  M  N  L  R  *  K  P  A  C  P  R  K  L  L  T  P  F  T  E  I  G  G  G  S  L  F  I  T  S  T  L  A  R  S  T  S  M  P  F  S  K  M  R  *  P  N  T  I  P  S  F  T  M  K  *  H  F  S  Q  F  S  T  K  L  Q  S  S  H  L  L  R  T  S  D  K  L  V  K  H  R  S  N  E  S  P  T  T  E  K  S  S  I  K  T  S  I  V  S  S  T  M  S  E  N  I  D  I  I  H  L  *  K  V  A  G  A  L  H  N  P  N  D  I  F  </second_frame>
            <third_frame>   L  *  L  *  Y  L  A  N  R  S  E  I  S  Q  K  Q  R  L  L  R  G  V  L  A  Q  S  L  C  S  S  S  G  L  H  L  G  L  Y  *  H  C  K  L  G  E  G  F  C  F  F  S  V  P  I  L  H  Q  E  P  P  H  *  H  R  T  L  P  Q  M  D  C  S  N  L  E  K  *  *  *  A  Q  T  L  T  S  L  L  A  H  R  M  L  *  D  R  I  H  Q  N  K  I  Y  I  L  S  P  A  I  C  T  M  G  V  Q  S  L  K  S  L  *  *  I  S  D  K  N  L  H  A  Q  E  S  F  S  H  L  S  Q  R  S  V  G  E  V  S  L  L  P  Q  L  *  L  D  Q  P  L  C  P  F  L  K  C  D  D  P  T  Q  Y  P  L  S  P  *  N  D  T  F  P  S  L  V  P  N  C  S  L  H  I  S  *  E  P  Q  T  N  W  S  N  T  A  R  M  N  H  Q  P  Q  R  N  H  P  *  K  P  L  *  Y  P  P  P  C  Q  K  I  L  T  S  Y  I  S  E  R  L  R  V  H  C  T  T  Q  T  T  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0108F03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="6685" PGL_stop="7321"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6685" e_stop="7108"/>
            <exon e_start="7147" e_stop="7321"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.972"/>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="6685" e_stop="7108" e_length="424"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="7109" i_stop="7146" i_length="38"/>
          </intron>
          <exon e_serial="2" e_score="0.914">
            <gDNA_exon_boundary e_start="7147" e_stop="7321" e_length="175"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6685" stop="7108"/>
              <exon start="7147" stop="7321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346006" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGGATTTAGTGCTTCTATTCAATTCCAGATTGCGCTTGTTTTCAGGCAAACTCAAGTCCAAATGGACTGGTCCTTACACGGTTACCCAACTATTCCCTCATGGAGCAGTTGAGTTGGAAACTAAGGAGGGTGTGAAGTTCAAGGTGAATGGACAGCGCATAAAAATCTATCTCGGGCATGCTGAATCGGCGAATGAAGTGATCGAGGCATACCATCTTGATGAAGTCTGAGTAATCAAGTGGCCCCAGTCGTGCCGCGACATTAAATCAGGCGCTTGTTGGGAGGCAACCCAATACTTATCATCTTTTTAATAATGGTAGTATTTTTTTTTCTATAAATGGGTTTTAAATTTGCAGGCACATCACTAGGAAATTCTGCAGAAAACTACTCCGCAGTAGCCACTGACGGATACAACAACGGACC : GTCATATGCATCCGTCACACCAGGTACGTATTTCTGTCATTTTTGAAATTAGGGCACACACGACGGAACCTACAACGGGGCGTCGCAAGTGCGACAGACCGTCGTCGGGGAACTGTCGCGCGATTAATGAAATCTACCCGACCCGACCCGGCTGGACCCTTTTCAAAATCTGACC</gDNA_template>
            <first_frame> R  D  L  V  L  L  F  N  S  R  L  R  L  F  S  G  K  L  K  S  K  W  T  G  P  Y  T  V  T  Q  L  F  P  H  G  A  V  E  L  E  T  K  E  G  V  K  F  K  V  N  G  Q  R  I  K  I  Y  L  G  H  A  E  S  A  N  E  V  I  E  A  Y  H  L  D  E  V  *  V  I  K  W  P  Q  S  C  R  D  I  K  S  G  A  C  W  E  A  T  Q  Y  L  S  S  F  *  *  W  *  Y  F  F  F  Y  K  W  V  L  N  L  Q  A  H  H  *  E  I  L  Q  K  T  T  P  Q  *  P  L  T  D  T  T  T  D   : R  H  M  H  P  S  H  Q  V  R  I  S  V  I  F  E  I  R  A  H  T  T  E  P  T  T  G  R  R  K  C  D  R  P  S  S  G  N  C  R  A  I  N  E  I  Y  P  T  R  P  G  W  T  L  F  K  I  *   </first_frame>
            <second_frame>  G  I  *  C  F  Y  S  I  P  D  C  A  C  F  Q  A  N  S  S  P  N  G  L  V  L  T  R  L  P  N  Y  S  L  M  E  Q  L  S  W  K  L  R  R  V  *  S  S  R  *  M  D  S  A  *  K  S  I  S  G  M  L  N  R  R  M  K  *  S  R  H  T  I  L  M  K  S  E  *  S  S  G  P  S  R  A  A  T  L  N  Q  A  L  V  G  R  Q  P  N  T  Y  H  L  F  N  N  G  S  I  F  F  S  I  N  G  F  *  I  C  R  H  I  T  R  K  F  C  R  K  L  L  R  S  S  H  *  R  I  Q  Q  R  T  :  V  I  C  I  R  H  T  R  Y  V  F  L  S  F  L  K  L  G  H  T  R  R  N  L  Q  R  G  V  A  S  A  T  D  R  R  R  G  T  V  A  R  L  M  K  S  T  R  P  D  P  A  G  P  F  S  K  S  D  </second_frame>
            <third_frame>   G  F  S  A  S  I  Q  F  Q  I  A  L  V  F  R  Q  T  Q  V  Q  M  D  W  S  L  H  G  Y  P  T  I  P  S  W  S  S  *  V  G  N  *  G  G  C  E  V  Q  G  E  W  T  A  H  K  N  L  S  R  A  C  *  I  G  E  *  S  D  R  G  I  P  S  *  *  S  L  S  N  Q  V  A  P  V  V  P  R  H  *  I  R  R  L  L  G  G  N  P  I  L  I  I  F  L  I  M  V  V  F  F  F  L  *  M  G  F  K  F  A  G  T  S  L  G  N  S  A  E  N  Y  S  A  V  A  T  D  G  Y  N  N  G  P :   S  Y  A  S  V  T  P  G  T  Y  F  C  H  F  *  N  *  G  T  H  D  G  T  Y  N  G  A  S  Q  V  R  Q  T  V  V  G  E  L  S  R  D  *  *  N  L  P  D  P  T  R  L  D  P  F  Q  N  L  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0108F03.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6685" stop="6915"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDLVLLFNSRLRLFSGKLKSKWTGPYTVTQLFPHGAVELETKEGVKFKVNGQRIKIYLGHAESANEVIEAYHLDEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0108F03.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7084" stop="7108"/>
                    <exon start="7147" stop="7319"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLTDTTTDRHMHPSHQVRISVIFEIRAHTTEPTTGRRKCDRPSSGNCRAINEIYPTRPGWTLFKI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0108F03.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7091" stop="7108"/>
                    <exon start="7147" stop="7320"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIQQRTVICIRHTRYVFLSFLKLGHTRRNLQRGVASATDRRRGTVARLMKSTRPDPAGPFSKSD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="10434" PGL_stop="10984"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10434" e_stop="10984"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="10434" e_stop="10984" e_length="551"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10434" stop="10984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341497" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCCCTCGAGAGAGTGCCAAGAGGCGTAGGGGTCGATCAGAGGATGAGGCGCGATCAAGGAAGAAGGAGCGCCGAGAGATGGAGGCCGCGAGGAGAGCCTCACTTGCTGAGGCGGAGGCACACCAGATAAGAGCATCGCAGATAGCGGCTGGGGCGTCTAGCTCCCGCACTGCAGAGACAGCAGGGGGCACTACTGATGGTGCAGTTATTGCTGAGGACATCACTGAGGGTGTCCAGATTGCTGAGGACACCACTGAGGGTGTCAAGATTACAGAGGATGTGGGTTCTGGGAAACCAGACCCACCAGCTTGTTGAACGACGGCGCTATGCGCCACAGGTTTGCTTCACCTACCCATCTAATCTTTAGATTTTTTTATGCATTGGGAACAATTGCATGTTTTTTTGTTGGGGGTGGGGTAAATGGAAAGTGAGTAGTAGGGTGAAGTCTGAGTAACCCAACTCACTATCCTCTTTTGGGGTTTTCTTGCCTGTGTTCTTTTTCCCCAAAAGACTGATTACTTTTTCTGTTGAACCGGCACGTTATATCTTGT</gDNA_template>
            <first_frame> S  P  R  E  S  A  K  R  R  R  G  R  S  E  D  E  A  R  S  R  K  K  E  R  R  E  M  E  A  A  R  R  A  S  L  A  E  A  E  A  H  Q  I  R  A  S  Q  I  A  A  G  A  S  S  S  R  T  A  E  T  A  G  G  T  T  D  G  A  V  I  A  E  D  I  T  E  G  V  Q  I  A  E  D  T  T  E  G  V  K  I  T  E  D  V  G  S  G  K  P  D  P  P  A  C  *  T  T  A  L  C  A  T  G  L  L  H  L  P  I  *  S  L  D  F  F  M  H  W  E  Q  L  H  V  F  L  L  G  V  G  *  M  E  S  E  *  *  G  E  V  *  V  T  Q  L  T  I  L  F  W  G  F  L  A  C  V  L  F  P  Q  K  T  D  Y  F  F  C  *  T  G  T  L  Y  L   </first_frame>
            <second_frame>  P  L  E  R  V  P  R  G  V  G  V  D  Q  R  M  R  R  D  Q  G  R  R  S  A  E  R  W  R  P  R  G  E  P  H  L  L  R  R  R  H  T  R  *  E  H  R  R  *  R  L  G  R  L  A  P  A  L  Q  R  Q  Q  G  A  L  L  M  V  Q  L  L  L  R  T  S  L  R  V  S  R  L  L  R  T  P  L  R  V  S  R  L  Q  R  M  W  V  L  G  N  Q  T  H  Q  L  V  E  R  R  R  Y  A  P  Q  V  C  F  T  Y  P  S  N  L  *  I  F  L  C  I  G  N  N  C  M  F  F  C  W  G  W  G  K  W  K  V  S  S  R  V  K  S  E  *  P  N  S  L  S  S  F  G  V  F  L  P  V  F  F  F  P  K  R  L  I  T  F  S  V  E  P  A  R  Y  I  L  </second_frame>
            <third_frame>   P  S  R  E  C  Q  E  A  *  G  S  I  R  G  *  G  A  I  K  E  E  G  A  P  R  D  G  G  R  E  E  S  L  T  C  *  G  G  G  T  P  D  K  S  I  A  D  S  G  W  G  V  *  L  P  H  C  R  D  S  R  G  H  Y  *  W  C  S  Y  C  *  G  H  H  *  G  C  P  D  C  *  G  H  H  *  G  C  Q  D  Y  R  G  C  G  F  W  E  T  R  P  T  S  L  L  N  D  G  A  M  R  H  R  F  A  S  P  T  H  L  I  F  R  F  F  Y  A  L  G  T  I  A  C  F  F  V  G  G  G  V  N  G  K  *  V  V  G  *  S  L  S  N  P  T  H  Y  P  L  L  G  F  S  C  L  C  S  F  S  P  K  D  *  L  L  F  L  L  N  R  H  V  I  S  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0108F03.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10434" stop="10748"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPRESAKRRRGRSEDEARSRKKERREMEAARRASLAEAEAHQIRASQIAAGASSSRTAETAGGTTDGAVIAEDITEGVQIAEDTTEGVKITEDVGSGKPDPPAC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="12718" PGL_stop="12003"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12718" e_stop="12003"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="12718" e_stop="12003" e_length="716"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12718" stop="12003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334737" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAGGGTCTCGTTTCAAAATACTTCAACTCTTGGAATCTGGGTACTGGGATCACTTCTCTGATCTTCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTGCCACCTACGGACCGTCACAAGCACGACGGACCATCATAAGCTCCGTAGGTGGTCTCTTCTGCAATTTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAAATTTCCTGCAAAACAAAGAGAAACTTATATCAAAATTAGCACAAACAAGGCTTTCGGACACACTAAACTTAAGGAAAAAGTATTAATTATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTCGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATTCATGTTTTATCCTTTGCAATCATTTGGATATCAATCCCGATTAATCCCATCAAATCTATGCATGTTATCACTATTAGGCTTGAATTTTGTGGGATTCGAACATGACACAGACTCACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCCGGTATTGCAACTAGTGTCCTCACTTTTAGAACAAAATCCTCATTTTTCACACAATGATTTCAGTTTGAGTATAAGGATTAC</gDNA_template>
            <first_frame> R  G  S  R  F  K  I  L  Q  L  L  E  S  G  Y  W  D  H  F  S  D  L  H  D  E  P  A  G  R  T  V  I  A  M  T  D  R  H  K  L  R  N  P  T  L  G  Q  T  S  P  S  S  F  S  S  F  S  T  L  P  P  T  D  R  H  K  H  D  G  P  S  *  A  P  *  V  V  S  S  A  I  F  A  Q  N  L  R  I  Q  L  W  T  N  F  L  Q  N  K  E  K  L  I  S  K  L  A  Q  T  R  L  S  D  T  L  N  L  R  K  K  Y  *  L  Y  R  E  T  T  V  Y  Q  H  P  Q  L  K  F  V  V  C  P  Q  A  T  H  Y  D  S  L  H  N  L  C  T  I  V  F  M  F  Y  P  L  Q  S  F  G  Y  Q  S  R  L  I  P  S  N  L  C  M  L  S  L  L  G  L  N  F  V  G  F  E  H  D  T  D  S  P  C  T  N  T  Y  P  L  Q  F  L  T  E  V  L  T  I  P  V  L  Q  L  V  S  S  L  L  E  Q  N  P  H  F  S  H  N  D  F  S  L  S  I  R  I   </first_frame>
            <second_frame>  E  G  L  V  S  K  Y  F  N  S  W  N  L  G  T  G  I  T  S  L  I  F  T  T  N  L  Q  D  G  P  S  *  P  *  R  T  V  T  S  F  V  I  P  H  L  V  R  L  P  H  L  P  S  A  A  S  L  R  C  H  L  R  T  V  T  S  T  T  D  H  H  K  L  R  R  W  S  L  L  Q  F  S  L  K  I  S  A  F  S  F  G  Q  I  S  C  K  T  K  R  N  L  Y  Q  N  *  H  K  Q  G  F  R  T  H  *  T  *  G  K  S  I  N  Y  T  V  K  P  R  Y  I  N  T  L  N  L  N  S  L  F  V  L  K  R  R  T  M  T  H  Y  T  I  F  V  Q  *  Y  S  C  F  I  L  C  N  H  L  D  I  N  P  D  *  S  H  Q  I  Y  A  C  Y  H  Y  *  A  *  I  L  W  D  S  N  M  T  Q  T  H  H  A  L  T  P  I  L  F  N  F  S  P  R  C  *  Q  F  R  Y  C  N  *  C  P  H  F  *  N  K  I  L  I  F  H  T  M  I  S  V  *  V  *  G  L  </second_frame>
            <third_frame>   R  V  S  F  Q  N  T  S  T  L  G  I  W  V  L  G  S  L  L  *  S  S  R  R  T  C  R  T  D  R  H  S  H  D  G  P  S  Q  A  S  *  S  H  T  W  S  D  F  P  I  F  L  Q  Q  L  L  Y  A  A  T  Y  G  P  S  Q  A  R  R  T  I  I  S  S  V  G  G  L  F  C  N  F  R  S  K  S  P  H  S  A  L  D  K  F  P  A  K  Q  R  E  T  Y  I  K  I  S  T  N  K  A  F  G  H  T  K  L  K  E  K  V  L  I  I  P  *  N  H  G  I  S  T  P  S  T  *  I  R  C  L  S  S  S  D  A  L  *  L  T  T  Q  S  L  Y  N  S  I  H  V  L  S  F  A  I  I  W  I  S  I  P  I  N  P  I  K  S  M  H  V  I  T  I  R  L  E  F  C  G  I  R  T  *  H  R  L  T  M  H  *  H  L  S  S  S  I  S  H  R  G  A  N  N  S  G  I  A  T  S  V  L  T  F  R  T  K  S  S  F  F  T  Q  *  F  Q  F  E  Y  K  D  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0108F03.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12355" stop="12005"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYRETTVYQHPQLKFVVCPQATHYDSLHNLCTIVFMFYPLQSFGYQSRLIPSNLCMLSLLGLNFVGFEHDTDSPCTNTYPLQFLTEVLTIPVLQLVSSLLEQNPHFSHNDFSLSIRI</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0108F03.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12593" stop="12345"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHTWSDFPIFLQQLLYAATYGPSQARRTIISSVGGLFCNFRSKSPHSALDKFPAKQRETYIKISTNKAFGHTKLKEKVLIIP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="31766" PGL_stop="33176"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31766" e_stop="31802"/>
            <exon e_start="32617" e_stop="33176"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.946"/>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="31766" e_stop="31802" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="31803" i_stop="32616" i_length="814"/>
          </intron>
          <exon e_serial="2" e_score="0.900">
            <gDNA_exon_boundary e_start="32617" e_stop="33176" e_length="560"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31766" stop="31802"/>
              <exon start="32617" stop="33176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344827" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGTACGAATACAAACACCAAACTGATTTTGTATTT : GAACTCATCATATTCTATCTGAGCAATATAAGCATTATTGGATGGTTGATTAAGTTGAGCACCATATACTACTGGTGGAGATACTTGCGCAATTTCGAAGGAACTCATTATGTTCCTTTAAAACAAGAGGATCATAACTGGGTGGTGGACCATGCAAAATATGACATATGTCACGAGTGTGCCCAGACTTATGACAATGACTACACTTGGATCGAGGTTCCCCGAAACGTCCTCCCCCTCACCGATTCTGCGTAGACTGATATGTACGCTTTCCAAAGGTTTGAGATGCGAGAATAGAGGAGTCAACAGTGGGTAATGAAACGATATTGTGACTAGGAGGTGCCGCAAGACGAAGGAGGCGAGAGAATAATTCATCGATTGTAGGAACTGTAGGGCTAGCTAAAATCTGATCACACAGAATCATTATCAGGAGGAAGTCCAGCAAGAGTAAGAACTAGAAACAATGTTTGTCTATGTTCTTGTTGTTTTTCCACATCTGTAGTTACTGGCATCAACATATCGAATTCCTCTATGACTGCCTGTACCTGTCCCAAGTAAGT</gDNA_template>
            <first_frame> K  V  R  I  Q  T  P  N  *  F  C  I   : *  T  H  H  I  L  S  E  Q  Y  K  H  Y  W  M  V  D  *  V  E  H  H  I  L  L  V  E  I  L  A  Q  F  R  R  N  S  L  C  S  F  K  T  R  G  S  *  L  G  G  G  P  C  K  I  *  H  M  S  R  V  C  P  D  L  *  Q  *  L  H  L  D  R  G  S  P  K  R  P  P  P  H  R  F  C  V  D  *  Y  V  R  F  P  K  V  *  D  A  R  I  E  E  S  T  V  G  N  E  T  I  L  *  L  G  G  A  A  R  R  R  R  R  E  N  N  S  S  I  V  G  T  V  G  L  A  K  I  *  S  H  R  I  I  I  R  R  K  S  S  K  S  K  N  *  K  Q  C  L  S  M  F  L  L  F  F  H  I  C  S  Y  W  H  Q  H  I  E  F  L  Y  D  C  L  Y  L  S  Q  V  S </first_frame>
            <second_frame>  K  Y  E  Y  K  H  Q  T  D  F  V  F  :  E  L  I  I  F  Y  L  S  N  I  S  I  I  G  W  L  I  K  L  S  T  I  Y  Y  W  W  R  Y  L  R  N  F  E  G  T  H  Y  V  P  L  K  Q  E  D  H  N  W  V  V  D  H  A  K  Y  D  I  C  H  E  C  A  Q  T  Y  D  N  D  Y  T  W  I  E  V  P  R  N  V  L  P  L  T  D  S  A  *  T  D  M  Y  A  F  Q  R  F  E  M  R  E  *  R  S  Q  Q  W  V  M  K  R  Y  C  D  *  E  V  P  Q  D  E  G  G  E  R  I  I  H  R  L  *  E  L  *  G  *  L  K  S  D  H  T  E  S  L  S  G  G  S  P  A  R  V  R  T  R  N  N  V  C  L  C  S  C  C  F  S  T  S  V  V  T  G  I  N  I  S  N  S  S  M  T  A  C  T  C  P  K  *   </second_frame>
            <third_frame>   S  T  N  T  N  T  K  L  I  L  Y  L :   N  S  S  Y  S  I  *  A  I  *  A  L  L  D  G  *  L  S  *  A  P  Y  T  T  G  G  D  T  C  A  I  S  K  E  L  I  M  F  L  *  N  K  R  I  I  T  G  W  W  T  M  Q  N  M  T  Y  V  T  S  V  P  R  L  M  T  M  T  T  L  G  S  R  F  P  E  T  S  S  P  S  P  I  L  R  R  L  I  C  T  L  S  K  G  L  R  C  E  N  R  G  V  N  S  G  *  *  N  D  I  V  T  R  R  C  R  K  T  K  E  A  R  E  *  F  I  D  C  R  N  C  R  A  S  *  N  L  I  T  Q  N  H  Y  Q  E  E  V  Q  Q  E  *  E  L  E  T  M  F  V  Y  V  L  V  V  F  P  H  L  *  L  L  A  S  T  Y  R  I  P  L  *  L  P  V  P  V  P  S  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0108F03.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31767" stop="31802"/>
                    <exon start="32617" stop="32871"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYEYKHQTDFVFELIIFYLSNISIIGWLIKLSTIYYWWRYLRNFEGTHYVPLKQEDHNWVVDHAKYDICHECAQTYDNDYTWIEVPRNVLPLTDSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="93045" PGL_stop="93221"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93045" e_stop="93221"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="93045" e_stop="93221" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93045" stop="93221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTCCCATACAATGATTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTGTTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAGTGACCACCAAACTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATTGTCCTTTCAGACTGGCCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  D  S  N  G  A  I  S  I  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  R  K  L  S  Q  *  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  L  S  D  W  P  S </first_frame>
            <second_frame>  Y  I  S  S  H  T  M  I  Q  M  G  P  Y  Q  Y  L  S  D  S  Y  C  C  M  K  T  P  L  R  V  G  S  Y  P  S  D  H  Q  T  L  S  H  T  H  E  A  Y  P  P  T  L  E  L  S  F  Q  T  G  H   </second_frame>
            <third_frame>   T  S  P  P  I  Q  *  F  K  W  G  H  I  N  T  *  V  I  A  I  V  V  *  K  L  R  *  G  *  E  A  I  P  V  T  T  K  L  Y  H  T  R  T  K  H  I  L  Q  H  L  N  C  P  F  R  L  A  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0108F03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="94526" PGL_stop="97236"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94526" e_stop="97236"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="94526" e_stop="97236" e_length="2711"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94526" stop="95238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95046" stop="95704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95115" stop="95872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95518" stop="95848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95725" stop="96283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95729" stop="97165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96804" stop="97236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGACGGTAGTAACTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCGAAATATGGCTTAAAAATCCTGTTCATCAAGCGCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATAACTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTATCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGATGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGTAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCCTAGCACAAAGAAAGGAGACGATGCGGACCGGATTGGGAGTGTAGTCACCCTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACTAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGTAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTCTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTATCTGGAGTCAATCCTAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACTTTCCGAACCCTGTCCCCTAGTGTAAAAACCATTAAACTCACCTCCCTTTCGAGGCCTTTTTGATATCGATGTTGGGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTTCCGCTACCTGTAAGGCCGAAATCCACAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCCCTTTTCCTATCCTTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCACGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCGAACCGTTTGACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTAAAGATCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACCTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATACATGCGGAGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTTAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAAAGAACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGTTGTTCTTC</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  V  T  S  *  P  N  K  A  P  Y  F  *  H  I  S  G  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  R  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  E  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  G  H  H  Y  K  F  V  M  P  I  T  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  I  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  D  A  F  V  Q  *  L  L  K  L  C  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  G  F  K  I  N  T  E  V  N  I  P  I  R  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  N  Y  *  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  P  S  T  K  K  G  D  D  A  D  R  I  G  S  V  V  T  L  P  H  *  R  V  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  K  F  T  M  *  I  *  T  I  S  K  *  V  R  Y  I  R  K  R  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  C  L  S  V  A  P  T  M  L  *  C  S  G  S  S  L  P  I  T  S  A  V  L  V  T  T  I  T  S  T  T  T  S  S  R  I  T  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  I  T  L  S  G  T  I  F  P  N  M  S  N  L  P  T  S  I  T  L  S  G  V  N  P  R  P  L  G  E  V  L  T  G  L  R  W  S  P  N  Y  S  L  *  *  R  L  N  W  S  N  *  V  T  F  R  T  L  S  P  S  V  K  T  I  K  L  T  S  L  S  R  P  F  *  Y  R  C  W  G  E  V  V  W  L  H  S  F  H  F  Y  H  K  V  Y  H  F  L  E  G  F  C  R  F  R  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  L  H  K  P  A  N  P  L  L  R  T  E  T  E  L  S  G  I  S  G  *  C  T  E  L  S  L  I  S  I  N  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  L  Q  S  P  G  D  I  L  L  H  K  Q  T  R  E  *  G  P  R  H  R  W  C  L  Y  W  L  T  L  D  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  E  P  F  D  Y  T  H  L  V  *  *  L  V  T  V  N  Q  K  I  I  S  I  L  R  F  S  T  L  K  D  R  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  T  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  F  Q  W  N  I  H  A  E  S  H  S  S  R  M  L  Y  F  *  N  R  R  C  W  R  R  K  H  W  R  C  L  T  L  I  R  *  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  H  F  L  I  L  H  L  F  S  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  R  S  H  C  P  S  I  R  W  A  R  C  S  S  S  S  S  K  E  R  P  P  T  T  S  T  T  A  P  C  R  C  S   </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  L  F  I  K  R  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  *  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  Y  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  M  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  V  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  I  I  F  L  A  Q  R  K  E  T  M  R  T  G  L  G  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  L  I  G  I  S  R  N  S  Q  C  K  F  R  P  L  A  N  E  *  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  L  L  P  L  P  C  C  D  V  V  A  P  V  C  P  S  P  R  P  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  L  G  Q  F  F  L  I  C  P  I  S  P  H  P  *  H  Y  L  E  S  I  L  G  P  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  L  S  E  P  C  P  L  V  *  K  P  L  N  S  P  P  F  R  G  L  F  D  I  D  V  G  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  S  A  T  C  K  A  E  I  H  N  S  D  L  N  P  F  T  N  R  R  I  R  S  *  G  L  K  Q  S  *  V  A  Y  L  D  S  A  R  N  L  A  S  *  A  L  T  D  I  L  P  C  S  R  L  R  N  S  S  L  F  L  S  F  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  H  V  I  G  G  A  S  I  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  R  L  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  I  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  P  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  G  T  Y  M  R  R  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  I  S  S  F  C  T  C  S  V  S  P  S  S  P  S  L  I  T  S  L  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  K  N  V  L  P  R  P  L  P  R  P  L  A  V  V  L  </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  S  N  *  L  T  Q  Q  S  S  L  F  L  T  H  *  W  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  P  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  R  N  M  A  *  K  S  C  S  S  S  A  *  T  Q  Q  G  H  S  *  D  Q  R  T  S  L  Q  I  R  N  A  H  N  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  N  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  I  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  C  L  C  S  I  T  L  E  V  V  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  R  V  Q  D  Q  Y  R  S  Q  Y  P  Y  P  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  E  L  L  K  P  T  Q  S  *  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  S  F  S  *  H  K  E  R  R  R  C  G  P  D  W  E  C  S  H  P  P  T  L  T  G  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  *  *  A  Y  Q  E  I  H  N  V  N  L  D  H  *  Q  M  S  K  I  H  K  K  T  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  L  S  V  C  C  P  Y  H  V  V  M  *  W  L  Q  F  A  H  H  L  G  R  S  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  Y  N  F  V  W  D  N  F  S  *  Y  V  Q  S  P  H  I  H  N  I  I  W  S  Q  S  *  A  P  R  R  S  V  D  R  S  E  V  V  P  Q  L  Q  S  V  V  K  T  E  L  V  E  L  S  N  F  P  N  P  V  P  *  C  K  N  H  *  T  H  L  P  F  E  A  F  L  I  S  M  L  G  *  S  R  L  A  S  L  L  P  L  L  S  Q  S  L  P  L  L  G  R  I  L  P  F  P  L  P  V  R  P  K  S  T  I  L  T  S  T  P  S  Q  T  G  E  S  A  L  E  D  *  N  R  V  E  W  H  I  W  I  V  H  G  T  *  P  H  K  H  *  P  T  S  Y  L  A  L  G  S  G  T  H  P  F  S  Y  P  S  K  S  G  G  Y  T  S  P  *  T  N  *  R  M  R  P  T  S  *  V  V  P  L  L  V  D  T  R  Y  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  P  H  R  T  V  *  L  Y  P  S  C  V  V  A  R  D  S  Q  P  E  N  H  K  H  P  P  I  Q  H  P  *  R  S  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  F  P  M  E  H  T  C  G  E  P  *  *  P  H  V  V  L  L  K  P  E  V  L  A  Q  K  T  L  E  V  P  D  L  D  Q  I  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  F  P  H  F  A  L  V  Q  F  P  H  P  P  L  L  L  L  L  P  *  S  V  E  E  S  L  P  *  Y  Q  M  G  *  V  L  V  L  F  L  *  R  T  S  S  H  D  L  Y  H  G  P  L  P  L  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0108F03.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95957" stop="96211"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITSAVLVTTITSTTTSSRITASTMTTSTSSYWGSITLSGTIFPNMSNLPTSITLSGVNPRPLGEVLTGLRWSPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0108F03.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95253" stop="95498"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAGNTSRNSRTTETDSIVGTWVVSSLRCAKKAKHPLLIIFLAQRKETMRTGLGV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0108F03.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94790" stop="95029"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEVEIWLKNPVHQAHERSRGIRKTKGHHYKFVMPITRSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0108F03.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97013" stop="97234"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAKISQNLIDHLWGRLGWHFLILHLFSFPILPFSYYFLSRWRSHCPSIRWARCSSSSSKERPPTTSTTAPCRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0108F03.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96758" stop="96958"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVTVNQKIISILRFSTLKDRRFQFQELTEKFMLITCHYRPSSQTWKRAYFQWNIHAESHSSRMLYF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0108F03.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97038" stop="97235"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISGVGWGGISSFCTCSVSPSSPSLITSLVGGGVTALVSDGLGARPLPLKNVLPRPLPRPLAVVL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0108F03.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="7"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94722" stop="94919"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSKYGLKILFIKRMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0108F03.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="8"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96267" stop="96461"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPLNSPPFRGLFDIDVGVKSSGFTPSTSITKSTTSWKDFAVSATCKAEIHNSDLNPFTNRRIRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="96542" PGL_stop="95098"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96542" e_stop="96356"/>
            <exon e_start="95611" e_stop="95098"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.893"/>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.893">
            <gDNA_exon_boundary e_start="96542" e_stop="96356" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="96355" i_stop="95612" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.920">
            <gDNA_exon_boundary e_start="95611" e_stop="95098" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96542" stop="96356"/>
              <exon start="95611" stop="95098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTAAGTTCCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCGGATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGTGGATTTCGGCCTTACAGGTAGCGGAAACGGCAAAATCCTTCCAAGAAGTGGTAGACTTT : GATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGACCCGTTAGTGTGGGAGGGTGACTACACTCCCAATCCGGTCCGCATCGTCTCCTTTCTTTGTGCTAGGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTACGATTGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTATTGAACAAAGGCATCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</gDNA_template>
            <first_frame> A  R  *  D  V  G  *  C  L  *  G  *  V  P  C  T  I  Q  I  C  H  S  T  L  F  Q  S  S  R  A  D  S  P  V  C  E  G  V  E  V  R  I  V  D  F  G  L  T  G  S  G  N  G  K  I  L  P  R  S  G  R  L   : *  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  P  V  S  V  G  G  *  L  H  S  Q  S  G  P  H  R  L  L  S  L  C  *  E  N  D  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  Y  D  *  V  G  F  S  S  S  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  G  *  G  Y  *  L  L  Y  *  S  *  T  R  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  T  T  S  R  V  I  E  Q  R  H  H  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  N  V  Y  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  W  I  S  A  L  Q  V  A  E  T  A  K  S  F  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  P  N  P  V  R  I  V  S  F  L  C  A  R  K  M  I  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  T  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  I  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  L  M  L  M  R  L  S  S  V  H  Y  P  D  M  P  L  N  S  V  S  V  L  K  S  G  F  A  G  L  *  R  G  *  G  Q  N  C  G  F  R  P  Y  R  *  R  K  R  Q  N  P  S  K  K  W  *  T  L :   M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  T  R  *  C  G  R  V  T  T  L  P  I  R  S  A  S  S  P  F  F  V  L  G  K  *  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  Q  *  F  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  R  I  G  I  L  T  S  V  L  I  L  N  P  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  H  N  F  K  S  Y  *  T  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  E  C  V  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0108F03.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96541" stop="96356"/>
                    <exon start="95611" stop="95099"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSELWISALQVAETAKSFQEVVDFDVILGMTWLSPQFAILDCNAKTVTLAKPGTDPLVWEGDYTPNPVRIVSFLCARKMISKGCLAFLAHLKDDTTQVPTIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLNKGIIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="97528" PGL_stop="97243"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97528" e_stop="97243"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="97528" e_stop="97243" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97528" stop="97243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTATTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACATCAACACCGGCCAGACAAGAAACAAGTGAGCCAGCCATTGGGGCTGTGG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  R  S  S  R  V  L  R  N  G  R  G  T  P  L  F  F  L  E  R  L  *  D  F  R  K  I  S  L  F  H  S  F  F  R  A  T  T  *  V  Q  L  V  S  R  R  Y  E  L  V  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  P  T  S  T  P  A  R  Q  E  T  S  E  P  A  I  G  A  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  G  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  I  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  R  P  D  K  K  Q  V  S  Q  P  L  G  L  W </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  Q  V  *  *  S  L  K  E  R  *  G  D  A  F  I  F  P  *  E  A  I  R  L  *  E  N  F  T  L  S  F  F  L  S  C  Y  Y  L  S  P  I  G  I  *  A  I  R  I  G  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  A  N  I  N  T  G  Q  T  R  N  K  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0108F03.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97479" stop="97243"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFILSFVLLLESNWYLGDTNWYLTIFTLFRRWLELEQRLRQHQHRPDKKQVSQPLGLW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="134416" PGL_stop="133963"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="134416" e_stop="133963"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="134416" e_stop="133963" e_length="454"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134416" stop="133963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340464" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATGGAGAAACCAACCCTGAACTCTTGGCCAGCAGCTGCAAATAATTTGGTTAGTAATCTCCTTGTTTGGTGTGTTAATTCTTTAGAATACCCTTGTTAATTATCCATTAATTTTAAGAAGGGGGCGTGACCAGTAGCTTAGGAAGTTTGTTTTAGTTATTGAATGTACTAAGTATGAATGGAAACCATAATCGGATTATTAGTGGTGTCGTGTTGGTGCTTGGGCTGTTTTGATTAAAGCAAACTGCAGGAAAATTCTGTTTTGGCATTATGTATATGTTGAATGTGATTATGAGTATATACTCCAAAGGATGAATACGATAAGGTAGATGTGTTACGAATTATAAAACGAGTTATCACTCGGTGTGTCGTTGCTTCGCTGATATAGTTGCCGAGATGGAACTGTTTTGGGGAGGGGGCTGTTTAATATGATTCTTTGGGTTATATGTGTTA</gDNA_template>
            <first_frame> K  W  R  N  Q  P  *  T  L  G  Q  Q  L  Q  I  I  W  L  V  I  S  L  F  G  V  L  I  L  *  N  T  L  V  N  Y  P  L  I  L  R  R  G  R  D  Q  *  L  R  K  F  V  L  V  I  E  C  T  K  Y  E  W  K  P  *  S  D  Y  *  W  C  R  V  G  A  W  A  V  L  I  K  A  N  C  R  K  I  L  F  W  H  Y  V  Y  V  E  C  D  Y  E  Y  I  L  Q  R  M  N  T  I  R  *  M  C  Y  E  L  *  N  E  L  S  L  G  V  S  L  L  R  *  Y  S  C  R  D  G  T  V  L  G  R  G  L  F  N  M  I  L  W  V  I  C  V  </first_frame>
            <second_frame>  N  G  E  T  N  P  E  L  L  A  S  S  C  K  *  F  G  *  *  S  P  C  L  V  C  *  F  F  R  I  P  L  L  I  I  H  *  F  *  E  G  G  V  T  S  S  L  G  S  L  F  *  L  L  N  V  L  S  M  N  G  N  H  N  R  I  I  S  G  V  V  L  V  L  G  L  F  *  L  K  Q  T  A  G  K  F  C  F  G  I  M  Y  M  L  N  V  I  M  S  I  Y  S  K  G  *  I  R  *  G  R  C  V  T  N  Y  K  T  S  Y  H  S  V  C  R  C  F  A  D  I  V  A  E  M  E  L  F  W  G  G  G  C  L  I  *  F  F  G  L  Y  V  L </second_frame>
            <third_frame>   M  E  K  P  T  L  N  S  W  P  A  A  A  N  N  L  V  S  N  L  L  V  W  C  V  N  S  L  E  Y  P  C  *  L  S  I  N  F  K  K  G  A  *  P  V  A  *  E  V  C  F  S  Y  *  M  Y  *  V  *  M  E  T  I  I  G  L  L  V  V  S  C  W  C  L  G  C  F  D  *  S  K  L  Q  E  N  S  V  L  A  L  C  I  C  *  M  *  L  *  V  Y  T  P  K  D  E  Y  D  K  V  D  V  L  R  I  I  K  R  V  I  T  R  C  V  V  A  S  L  I  *  L  P  R  W  N  C  F  G  E  G  A  V  *  Y  D  S  L  G  Y  M  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0108F03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 115 chains have been computed
$ 
$ memory statistics:
$ 36432 bytes spliced alignments in total
$ 16 spliced alignments have been stored
$ 2277 bytes was the average size of a spliced alignment
$ 16208 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1620 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 142 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-06 20:35:07
-->
