<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-11-22 05:26:23"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0111F22-q48IJ/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0111F22-q48IJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0111F22-q48IJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M4664" ref_strand="+" ref_description="SGN-M4664 U146437 [unigene_markers]">
      <seq>tgaattgcttaacccccataggccctaatagcggcaaataagttttttttgggcctttctcctcctttcaccctctatcttcaataaagaaccaatttttatgataaaagaatcaatttttacagtaaagaaccaatttttattggtttaagaagaggtgaggggtgagaagagaagggtaaagaaccataaaatctaagtggggtgttgtttttttgtaagttcttgttctgcaaatttctctctataatggcttgcagtgttgcagactctggtttcctggtcttggcttccaagaaaggaccagttcatagcactagaattgggcaaattgcttcttcaggagcatgttgtttaaagtgggaaagtctacctcagataagctcgaaacagaaaggctgcttaatttactcgagaaagaaaaatgttatacaagctgttgccgttccaatagcacctgcacccttagactctgcagaggaaaggaatcgattaagtgaaaaatatggttttagacaaattggagaaccactacctgataacgttacaatgagagatattactgagtcactaccaaagaaggtatttgagattgacgatgggaaggcattgaagtctgttttgatctcagtaacttcatacacactggggctcttcatgattgccaaagctccatggtatctacttcccctggcctgggcttggacaggaacagcagttacagggttttttgttataggacatgattgcgctcacaaatccttctcaaagaacaaattattggaagatattgttggaacactagcctttttgccattgatatatccctatgagccatggaggttcaagcatgatcggcatcacgcaaaaacaaacatgttgcacgaagacacagcttggcagcctgtttggaaggaggagttcgattcagtccctgccctgaggaaggcaattatattaggttacggccctattcgaccttggatgtctatagctcactggtggctctgtcatttcaatttgagtaagttcagaccaaatgaaattgacagagtgaaaataagtttgggttgcgtcttcgcttttatggcaatcggctggccactgataatctggaaaacagggattattggatggatcaagttctggttaatgccatggttgggttatcatttttggatgagtacttttacaatggttcatcatacggctccccacatacccttcaaaacttctgatgagtggaatgctgctcaggcccagctgaatggcacagttcactgtgactatcctagttggattgaggttctttgtcatgatatcaatgttcatattccccaccacatatcccccagaataccaagttataatttacgggcagctcatcaatctctccaagagaattggggaaagtaccttaacgaggcttcatggaactggcgtctaatgaagacaatactgacagtatgtcatgtctatgataaggagcggaattatgttccatttgatgaaattgtccccgaagaagccaagccaatcacattccttaaaaaagtaatgcctgactacgcttgattagcgtgcacctcaaaaggtcaattttcacttgcttcattctttgggaagatatcctttcaatcctattgggtccggtcaagggcccaaatgtcaagttctcacaaatattgtaagacttgttttaacacattaaagagagaaatatcttctcaaaaagtttcttggtagtgttagtttagtatacaataatttaactttcttgcgatttgtcttctttttttagaagtatccatgaataacatgttgcttattaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0111F22-q48IJ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0111F22.2" temp_strand="+" temp_description="C07HBa0111F22.2  AC212630.2 htgs_phase:2 submitted_to_sgn_as:gi|167860209|gb|AC212630.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0111F22, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="9474" stop="112103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9774" g_stop="10061" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10062" i_stop="10155" i_length="94">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10156" g_stop="10210" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="343" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10211" i_stop="11687" i_length="1477">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11688" g_stop="11926" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="582" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11927" i_stop="12248" i_length="322">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12249" g_stop="12392" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="726" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12393" i_stop="12646" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12647" g_stop="12798" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="878" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12799" i_stop="13357" i_length="559">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13358" g_stop="13480" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="879" r_stop="1001" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="13481" i_stop="13597" i_length="117">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="13598" g_stop="13775" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1002" r_stop="1179" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="13776" i_stop="13878" i_length="103">
            <donor d_prob="0.619" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="13879" g_stop="13997" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1180" r_stop="1298" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="13998" i_stop="14660" i_length="663">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="14661" g_stop="14775" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1299" r_stop="1413" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="14776" i_stop="14978" i_length="203">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="14979" g_stop="15405" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1414" r_stop="1840" r_length="427" r_score="0.993"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="15406" i_stop="15585" i_length="180">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.775" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="15586" g_stop="15598" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1841" r_stop="1853" r_length="13" r_score="0.538"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0111F22.2" gen_strand="+" ref_id="SGN-M4664" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0111F22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M4664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9774" e_stop="10061"/>
          <exon e_start="10156" e_stop="10210"/>
          <exon e_start="11688" e_stop="11926"/>
          <exon e_start="12249" e_stop="12392"/>
          <exon e_start="12647" e_stop="12798"/>
          <exon e_start="13358" e_stop="13480"/>
          <exon e_start="13598" e_stop="13775"/>
          <exon e_start="13879" e_stop="13997"/>
          <exon e_start="14661" e_stop="14775"/>
          <exon e_start="14979" e_stop="15405"/>
          <exon e_start="15586" e_stop="15598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTGCTTAACCCCCATAGGCCCTAATAGCGGCAAATAAGTTTTTTTTGGGCCTTTCTCCTCCTTTCACCCTCTATCTTCAATAAAGAACCAATTTTTATGATAAAAGAATCAATTTTTACAGTAAAGAACCAATTTTTATTGGTTTAAGAAGAGGTGAGGGGTGAGAAGAGAAGGGTAAAGAACCATAAAATCTAAGTGGGGTGTTGTTTTTTTGTAAGTTCTTGTTCTGCAAATTTCTCTCTATAATGGCTTGCAGTGTTGCAGACTCTGGTTTCCTGGTCTTGGTAAAATCCCTTTTTTTTTTTGCTTCCACCATTCTTGTATTGATGAATTTTGGTTGTAAGCTTATGTTGTTGTTTTTTGGTTTTTAATGTATAGGCTTCCAAGAAAGGACCAGTTCATAGCACTAGAATTGGGCAAATTGCTTCTTCAGGTCTGTACAGAAAAATTGCTAGCCTTTTGTTGTGTACTGCATTGTTGCTTGAACAAGGTTGATTTTTTTTGTGTGTGTGTGTGTTAGGTTGGTGGGGGTCTAGTTTTCGTGTTCTTGATTATGTGACACCTAAAAGTAGCTTCTTTGACTGGTAAATTGCAGATTAGTTCTGTAAGGATTTGGCTATGTAATTGATTACTGAAAATTAGTAGCTGGACATGTAGGTTTCATCTGCATCTTTGCTTGAACTGAGTTAATTGTGTGTGTCAGAGTGTTGTAGTTGTTGTGGTGGTGGGGGTTTATCGTTGATTTTGCTTTTCTGTTTCTTGAGTTGAGGACACCTAAATGTAGCTTTTTGAATGATAATTTGCTGGTTAATTCTGTGAGTATTTAGCTGTGTAAATTACTGAAAATTAGTGGCTCAGAGTAGTCAAAAGCGAAAAATGTCAAAGTCTGATGAAGTGTTTAGCGTAAAGCACGATTAAAGTGTGGGCTTTAGCCAAGAAAAGCGCCTATGAAGAAACTCAAAATCTATTAGTTTAAACACAGACAACAATTATTTTGGACAAAAGAATGAAAAAAACTATAATTAAGTGATGCCACTTATTTTAATGTCTTTAGCAAAGATATAAAAGTTTAAAAGGGGATACAGGTTTCGATTAACATGATAGGCGCATAATTGGGCCAGTTTTCCACCGCAAAGGCATGTTTGCTCAACTTATAATAGTTCAGGGCCATTTTTGGACCTACAGCCAAATGGAGGGCAATTTTGTTCTATATACAATATTTCAAGGCCATTTTTGTCCCTTTTTCGTTCTTGTGTTGAAGGTGAAATTTCTTGATTGTTAATAGAACACTTAAATGTAATTTCTATGAATGGTAATTGCATGTTACTTCTCTGAAGGTTTAGTTGTGTAGATTACTGAAAATTAGTGGCTAAAATTATATGGATTTTCATCTGTATGAATTTTCCTTTCTTGAATTGTTGTTTCTTTTTGTTTCTCCCTGAATTTTGGATACAAAATTTGGAATATCTTAAAGTAACTTGGAATTAGTCATTCCTCGCGAATTTTGGATCATGAGCATATGCATTCCAAGAAAATTGAGCTGCTAAACTAAAGACCATTTCTAATCTAAAAATCTCTCGACTTTCTCTTTTGTGATAAATGTCTTAACTAAATTATTGTTTAGTGAACGGAATAAGACGCAACAGTATTATCAGACAAATGCTAATGTTAATTATTAACAAACATATTCATATTGATATATTGGTTCGCCGTAATATTCCTGGAAAGCTTTAAAGCAATTTTGCATTTGAGATGTGAATACTAAGATTACTATGCATTGCACGGTGTTAGGCCAAGTTTGATAACTAAGCTGAAATATTTAACAATTGCTGAATCTCTTTGATGTTTTGGATGGGATTTGCATTGTGTCTGACCAGCTTTGTGTAATCTTTGTTTGAACGTATAAACAGGAGCATGTTGTTTAAAGTGGGAAAGTCTACCTCAGATAAGCTCGAAACAGAAAGGCTGCTTAATTTACTCGAGAAAGAAAAATGTTATACAAGCTGTTGCCGTTCCAATAGCACCTGCACCCTTAGACTCTGCAGAGGAAAGGAATCGATTAAGTGAAAAATATGGTTTTAGACAAATTGGAGAACCACTACCTGATAACGTTACAATGAGAGATATTACTGAGTCACTACCAAAGAAGGTACTATTATTTCCTTTGACAAAGGTTTTTGAAAATCTAAATGTTCGTTTATTTCCTTTAGAATCTGGAAATGACATTGGTACATTAGTTACTCACACAGTCACACTTCTTCCGAATGAGATGTACTGTTTGTATAAAGAACTACAAAAATGAGTATCCAGTCCCTTTTGTGAAACGTCTTCAAGTCAGTCTCCATTGTTACAATGAAGGACAAAAATGGACTCATATAGTGACCAAAATAGAAATAGTATTTTGTTTCCATTGGTCAGTAACTTGCTATCCATGGTTCAACTTTGATTTTAAGATTGTTTTACTGCGCTAGGTATTTGAGATTGACGATGGGAAGGCATTGAAGTCTGTTTTGATCTCAGTAACTTCATACACACTGGGGCTCTTCATGATTGCCAAAGCTCCATGGTATCTACTTCCCCTGGCCTGGGCTTGGACAGGAACAGCAGTTACAGGGGTGAGTTCTGTATTTCTTTTTTTTTCTGTTATATATATTATTTTTTCTTGCCATTATTCTATTTTTATGTGATCTCTAATGCAGCAGGGAAAGGAAATCATGTTAGGACAGCACAGATCAACTTACTTAACTTTTTTGTGCCCATCTCCAAATCGAAATTTAGCCTGTTTATTTCCTCATTTATTTATTATTTATATCCTTTTCTTAACCAGAAAACTCAAAGTCGATTTCTTTGTTTGGTTTTATTTGTGAAGTTTTTTGTTATAGGACATGATTGCGCTCACAAATCCTTCTCAAAGAACAAATTATTGGAAGATATTGTTGGAACACTAGCCTTTTTGCCATTGATATATCCCTATGAGCCATGGAGGTTCAAGCATGATCGGCATCACGCAAAAACAAACATGTTAGTCAAATGACCCTTGTCCATTTATTTTGCTTCAAGTTAATTACATCTTTGTTTTTGGCATGACCTGTGAAATGTCAACAGTATATTTAACTGTTCAACTGGAAATTTCAAGGCTAATTCCACTGGTTAGACAGGAATTTGACATTGTGTTTAGATTTAATTCTGCCTTGTTCCTTTGATGGGTTGCCTATATAGGAAAACGAGATCCATTTTATTACTTTTCTGGCCCATAAACTTTTCCCTACTGATCCTACACAAGTCAGAGAATAGGCATATATGTGGTTAACAACTTCAAATTAAGGAAGTCAGCTTTTGGTCGATGTTCAAATTTGCTCTTCATGTCCAAAACTGGTAAAAATGTAGTTGCCGTCACAGCTTGTATATTAATGTAGGCCATCTCTTTCGAGTAATGATAATTAAACCAACCACTTGAAGAAATCTTTTTCCATCAATGAAGCTTCCCTTGCAATTGTTTAGTATATTAGACTGCAACACTTTATACTCATTATTCATCTATATGTAAAAAAACTGTAACTTTCACTTTTCTCTATTCCAGGTTGCACGAAGACACAGCTTGGCAGCCTGTTTGGAAGGAGGAGTTCGATTCAGTCCCTGCCCTGAGGAAGGCAATTATATTAGGTTACGGCCCTATTCGACCTTGGATGTCTATAGCTCACTGGTATGCCATTATAAATAATCGTTTTGCTGTGAAAATAGCCATATTTTCTAATTTGTATGGCCTTTTTTTTTTCCATAACTTCTTGATTCTTATCTACTATTTTGGTTCTTGATTTAGGTGGCTCTGTCATTTCAATTTGAGTAAGTTCAGACCAAATGAAATTGACAGAGTGAAAATAAGTTTGGGTTGCGTCTTCGCTTTTATGGCAATCGGCTGGCCACTGATAATCTGGAAAACAGGGATTATTGGATGGATCAAGTTCTGGTTAATGCCATGGTTGGGTTATCATTTTTGGGTAACAAGAATTTCCTGTGATTAACTCTTGGTACCTCGTTTTTGAAATTTTGCTATAGAAAACTTCCTGTACTAATAAGTTTTTATTCTATTCAAATGATCAGATGAGTACTTTTACAATGGTTCATCATACGGCTCCCCACATACCCTTCAAAACTTCTGATGAGTGGAATGCTGCTCAGGCCCAGCTGAATGGCACAGTTCACTGTGACTATCCTAGTTGGTAATTGATCTCTCTTATCCTCTTTCGTGAAGTTGTTGGCTAATCTTGTTCTCCCTTGGTTTCAATTTATTTGTCTTTACTTTCCGTTTTAGTCTGTTTAAAAAAGAATGCATCTTTCATAATTTGGCTACTATTTATTTCAACATCTTACGCGGCATGCTTAAGATCACAATATTAATGGACATTTTGGTACGTTATACACATCTTTAGCTTAAGACCACAAGATCCTATAATCTTCTTTATTTTCTTAAACTCCGTCCACGGTCAAACTAAGGCAGATAAATTGAAATGGAGGGAGTATGAATTAAACTATTAAAGCTGACCCACTATATCTGTTTCAGAAAGTGGAGAAATGAAAATTGATCACAAGAATTATATTTATGGAAATCTTAATTTTTCAAAGTGATCTTAATTGAAATTTCATGAAGAACAGAAGTAGGAATTTCTGCTTGGACTCTTCAACAATGTCAACGGGTGTGTGTCAGATACTCCAAAAGTAGTGTATTTTTGGAGAACCTGGCACGGGCGTGGCGTCAAAAGTGAAGAGTCAGGCACACCTGCCCACATCTCCGTTTCCACGATTCATATCCTGGAAGAAAGATGGATTTGTATTATCTATCAGATTATGATCAAAGTCTGATCTTTGCTCTATCTTTTCGACAGGATTGAGGTTCTTTGTCATGATATCAATGTTCATATTCCCCACCACATATCCCCCAGAATACCAAGTTATAATTTACGGGCAGCTCATCAATCTCTCCAAGAGAATTGGGGAAAGGTATCGTGACTTGACATTTTCTCTAATACTGTTTCATTTCTTTTTGATGATATTTGAATGGGGTATCATTTTTTCTGATTGGTGGGTGGAAAAAGAAAATGCAGGAGTGAGGAAAAAAATGAATATAAAAACTTCATCTTGATCTCTAAAATCGTCTTCCATTGCTATTGACAACATTGTGTTTTGTTCTTGACACCTAACAGTACCTTAACGAGGCTTCATGGAACTGGCGTCTAATGAAGACAATACTGACAGTATGTCATGTCTATGATAAGGAGCGGAATTATGTTCCATTTGATGAAATTGTCCCCGAAGAAGCCAAGCCAATCACATTCCTTAAAAAAGTAATGCCTGACTACGCTTGATTAGCGTGCACCTCAAAAGGTCAATTTTCACTTGCTTCATTCTTTGGGAAGATATCCTTTCAATCCTATTGGGTCCGGTCAAGGGCCCAAATGTCAAGTTCTCACAAATATTGTAAGACTTGTTTTAACACATTAAAGAGAGAAATATCTTCTCAAAAAGTTTCTTGGTAGTGTTAGTTTAGTATACAATAATTTAACTTTCTTGCGATTTGTCTTCTTTTTTTAGAAGTATCCATGAATAACATGTTGCTTATTAAATACCAAAGCCTCGTTATGATCTTCAACCTACAGTCGACTCAATATAATCTGCCAATACTTATGTTATGCCAGTATCCTCAAATCTTGTTTTACACATGTAAATGTAGATGGTTGACAGTAATTTACCTTCATTACTCATCTGTCCATTGTCATTTTGCATTTGAAATTTGAAACCACATGATAACAGATTGTAAAACCTG</genome_strand>
        <mrna_strand>TGAATTGCTTAACCCCCATAGGCCCTAATAGCGGCAAATAAGTTTTTTTTGGGCCTTTCTCCTCCTTTCACCCTCTATCTTCAATAAAGAACCAATTTTTATGATAAAAGAATCAATTTTTACAGTAAAGAACCAATTTTTATTGGTTTAAGAAGAGGTGAGGGGTGAGAAGAGAAGGGTAAAGAACCATAAAATCTAAGTGGGGTGTTGTTTTTTTGTAAGTTCTTGTTCTGCAAATTTCTCTCTATAATGGCTTGCAGTGTTGCAGACTCTGGTTTCCTGGTCTTG..............................................................................................GCTTCCAAGAAAGGACCAGTTCATAGCACTAGAATTGGGCAAATTGCTTCTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCATGTTGTTTAAAGTGGGAAAGTCTACCTCAGATAAGCTCGAAACAGAAAGGCTGCTTAATTTACTCGAGAAAGAAAAATGTTATACAAGCTGTTGCCGTTCCAATAGCACCTGCACCCTTAGACTCTGCAGAGGAAAGGAATCGATTAAGTGAAAAATATGGTTTTAGACAAATTGGAGAACCACTACCTGATAACGTTACAATGAGAGATATTACTGAGTCACTACCAAAGAAG..................................................................................................................................................................................................................................................................................................................................GTATTTGAGATTGACGATGGGAAGGCATTGAAGTCTGTTTTGATCTCAGTAACTTCATACACACTGGGGCTCTTCATGATTGCCAAAGCTCCATGGTATCTACTTCCCCTGGCCTGGGCTTGGACAGGAACAGCAGTTACAGGG..............................................................................................................................................................................................................................................................TTTTTTGTTATAGGACATGATTGCGCTCACAAATCCTTCTCAAAGAACAAATTATTGGAAGATATTGTTGGAACACTAGCCTTTTTGCCATTGATATATCCCTATGAGCCATGGAGGTTCAAGCATGATCGGCATCACGCAAAAACAAACAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCACGAAGACACAGCTTGGCAGCCTGTTTGGAAGGAGGAGTTCGATTCAGTCCCTGCCCTGAGGAAGGCAATTATATTAGGTTACGGCCCTATTCGACCTTGGATGTCTATAGCTCACTG.....................................................................................................................GTGGCTCTGTCATTTCAATTTGAGTAAGTTCAGACCAAATGAAATTGACAGAGTGAAAATAAGTTTGGGTTGCGTCTTCGCTTTTATGGCAATCGGCTGGCCACTGATAATCTGGAAAACAGGGATTATTGGATGGATCAAGTTCTGGTTAATGCCATGGTTGGGTTATCATTTTTGG.......................................................................................................ATGAGTACTTTTACAATGGTTCATCATACGGCTCCCCACATACCCTTCAAAACTTCTGATGAGTGGAATGCTGCTCAGGCCCAGCTGAATGGCACAGTTCACTGTGACTATCCTAGTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAGGTTCTTTGTCATGATATCAATGTTCATATTCCCCACCACATATCCCCCAGAATACCAAGTTATAATTTACGGGCAGCTCATCAATCTCTCCAAGAGAATTGGGGAAAG...........................................................................................................................................................................................................TACCTTAACGAGGCTTCATGGAACTGGCGTCTAATGAAGACAATACTGACAGTATGTCATGTCTATGATAAGGAGCGGAATTATGTTCCATTTGATGAAATTGTCCCCGAAGAAGCCAAGCCAATCACATTCCTTAAAAAAGTAATGCCTGACTACGCTTGATTAGCGTGCACCTCAAAAGGTCAATTTTCACTTGCTTCATTCTTTGGGAAGATATCCTTTCAATCCTATTGGGTCCGGTCAAGGGCCCAAATGTCAAGTTCTCACAAATATTGTAAGACTTGTTTTAACACATTAAAGAGAGAAATATCTTCTCAAAAAGTTTCTTGGTAGTGTTAGTTTAGTATACAATAATTTAACTTTCTTGCGATTTGTCTTCTTTTTTTAGAAGTATCCATGAATAACATGTTGCTTATTAAAAAAAAAA....................................................................................................................................................................................AAAAAAAAACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0111F22-q48IJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1631" ref_strand="+" ref_description="SGN-M1631 T0846 [cos_markers]">
      <seq>cggctggccactgataatctggaaaacagggattattggatggatcaagttctggttaatgccatggttgggttatcatttttggatgagtacttttacaatggttcatcatacggctccccacatacccttcaaaacttctgatgagtggaatgctgctcaggcccagctgaatggcacagttcactgtgactatcctagttggattgaggttctttgtcatgatatcaatgttcatattccccaccacatatcccccagaataccaagttataatttacgggcagctcatcaatctctccaagagaattggggaaagtaccttaacgaggcttcatggaactggcgtctaatgaagacaatactgacagtatgtcatgtctatgataaggagcggaattatgttccatttgatgaaattgtccccgaagaagccaagccaatcacattccttaaaaaagtaatgcctgactacgcttgattagcgtgcacctcaaaaggtcaattttcacttgcttcattctttgggaagatatcctttcaatcctattgggtccggtcaagggcccaaatgtcaagttctcacaaatattgtaagacttgttttaacacattaaagagagaaatatcttctcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0111F22-q48IJ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0111F22.2" temp_strand="+" temp_description="C07HBa0111F22.2  AC212630.2 htgs_phase:2 submitted_to_sgn_as:gi|167860209|gb|AC212630.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0111F22, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="13391" stop="15598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13691" g_stop="13775" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13776" i_stop="13878" i_length="103">
            <donor d_prob="0.619" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13879" g_stop="13997" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="204" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13998" i_stop="14660" i_length="663">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14661" g_stop="14775" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="319" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14776" i_stop="14978" i_length="203">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14979" g_stop="15298" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="639" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0111F22.2" gen_strand="+" ref_id="SGN-M1631" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0111F22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M1631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13691" e_stop="13775"/>
          <exon e_start="13879" e_stop="13997"/>
          <exon e_start="14661" e_stop="14775"/>
          <exon e_start="14979" e_stop="15298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCTGGCCACTGATAATCTGGAAAACAGGGATTATTGGATGGATCAAGTTCTGGTTAATGCCATGGTTGGGTTATCATTTTTGGGTAACAAGAATTTCCTGTGATTAACTCTTGGTACCTCGTTTTTGAAATTTTGCTATAGAAAACTTCCTGTACTAATAAGTTTTTATTCTATTCAAATGATCAGATGAGTACTTTTACAATGGTTCATCATACGGCTCCCCACATACCCTTCAAAACTTCTGATGAGTGGAATGCTGCTCAGGCCCAGCTGAATGGCACAGTTCACTGTGACTATCCTAGTTGGTAATTGATCTCTCTTATCCTCTTTCGTGAAGTTGTTGGCTAATCTTGTTCTCCCTTGGTTTCAATTTATTTGTCTTTACTTTCCGTTTTAGTCTGTTTAAAAAAGAATGCATCTTTCATAATTTGGCTACTATTTATTTCAACATCTTACGCGGCATGCTTAAGATCACAATATTAATGGACATTTTGGTACGTTATACACATCTTTAGCTTAAGACCACAAGATCCTATAATCTTCTTTATTTTCTTAAACTCCGTCCACGGTCAAACTAAGGCAGATAAATTGAAATGGAGGGAGTATGAATTAAACTATTAAAGCTGACCCACTATATCTGTTTCAGAAAGTGGAGAAATGAAAATTGATCACAAGAATTATATTTATGGAAATCTTAATTTTTCAAAGTGATCTTAATTGAAATTTCATGAAGAACAGAAGTAGGAATTTCTGCTTGGACTCTTCAACAATGTCAACGGGTGTGTGTCAGATACTCCAAAAGTAGTGTATTTTTGGAGAACCTGGCACGGGCGTGGCGTCAAAAGTGAAGAGTCAGGCACACCTGCCCACATCTCCGTTTCCACGATTCATATCCTGGAAGAAAGATGGATTTGTATTATCTATCAGATTATGATCAAAGTCTGATCTTTGCTCTATCTTTTCGACAGGATTGAGGTTCTTTGTCATGATATCAATGTTCATATTCCCCACCACATATCCCCCAGAATACCAAGTTATAATTTACGGGCAGCTCATCAATCTCTCCAAGAGAATTGGGGAAAGGTATCGTGACTTGACATTTTCTCTAATACTGTTTCATTTCTTTTTGATGATATTTGAATGGGGTATCATTTTTTCTGATTGGTGGGTGGAAAAAGAAAATGCAGGAGTGAGGAAAAAAATGAATATAAAAACTTCATCTTGATCTCTAAAATCGTCTTCCATTGCTATTGACAACATTGTGTTTTGTTCTTGACACCTAACAGTACCTTAACGAGGCTTCATGGAACTGGCGTCTAATGAAGACAATACTGACAGTATGTCATGTCTATGATAAGGAGCGGAATTATGTTCCATTTGATGAAATTGTCCCCGAAGAAGCCAAGCCAATCACATTCCTTAAAAAAGTAATGCCTGACTACGCTTGATTAGCGTGCACCTCAAAAGGTCAATTTTCACTTGCTTCATTCTTTGGGAAGATATCCTTTCAATCCTATTGGGTCCGGTCAAGGGCCCAAATGTCAAGTTCTCACAAATATTGTAAGACTTGTTTTAACACATTAAAGAGAGAAATATCTTCTCAAAA</genome_strand>
        <mrna_strand>CGGCTGGCCACTGATAATCTGGAAAACAGGGATTATTGGATGGATCAAGTTCTGGTTAATGCCATGGTTGGGTTATCATTTTTGG.......................................................................................................ATGAGTACTTTTACAATGGTTCATCATACGGCTCCCCACATACCCTTCAAAACTTCTGATGAGTGGAATGCTGCTCAGGCCCAGCTGAATGGCACAGTTCACTGTGACTATCCTAGTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAGGTTCTTTGTCATGATATCAATGTTCATATTCCCCACCACATATCCCCCAGAATACCAAGTTATAATTTACGGGCAGCTCATCAATCTCTCCAAGAGAATTGGGGAAAG...........................................................................................................................................................................................................TACCTTAACGAGGCTTCATGGAACTGGCGTCTAATGAAGACAATACTGACAGTATGTCATGTCTATGATAAGGAGCGGAATTATGTTCCATTTGATGAAATTGTCCCCGAAGAAGCCAAGCCAATCACATTCCTTAAAAAAGTAATGCCTGACTACGCTTGATTAGCGTGCACCTCAAAAGGTCAATTTTCACTTGCTTCATTCTTTGGGAAGATATCCTTTCAATCCTATTGGGTCCGGTCAAGGGCCCAAATGTCAAGTTCTCACAAATATTGTAAGACTTGTTTTAACACATTAAAGAGAGAAATATCTTCTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0111F22-q48IJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8408" ref_strand="+" ref_description="SGN-M8408 C2_At4g30580 [cosii_markers]">
      <seq>gtttaactccgacgaggattccgacgaatactatggaagtctgttatcactcaaaattcaacaattttcacttttttcaatcacctccgctccatttctggaagaagaaaggaaagttatcgcagtcgctgtcgccatctctgcatccacaattgacttctagccatggaaactactcctgttgctcgtctttaaggcaatcagtttggagaaatacaaaattttatgccgttccaggcagtacaacttttggcacaagtagggaagcatgtgtgtcccttccctcttccccccaacaaaagaagtataatagcgcttttggaaataacagcttttatagacaatatagatcattgagagacattattgcaaggtccgaacttgctaataccagctcagccggtgctgcttatccactgtcagaactagagttgaggtcaaaagtaagagcaatttgcttttacgctgtcagtgctttctctgccatctttttgttcgtgatcatgcttgtgcaacatccttttgtactgttatttgatcgataccataggaaggctcaccatcttgttgccaggacatgggcaaccttgaccattacaccattttatagagtcgagtttgagggcttggagaatcttccttctccagatactcctgcagtatatgtgtccaaccatcagagctttttggacatatatacattacttactcttgggagaaacttcaagttcatcagcaagactgcaattttcctaattcctattattggatgggccatgtatctgatgggtctaattccgttaaggcgcatggacagcagaagtcaattggaatgtctcaagcgttgcatggatttagtcaagaagggggcatctgtctttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0111F22-q48IJ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0111F22.2" temp_strand="+" temp_description="C07HBa0111F22.2  AC212630.2 htgs_phase:2 submitted_to_sgn_as:gi|167860209|gb|AC212630.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0111F22, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="66975" stop="72613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67275" g_stop="67373" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67374" i_stop="67513" i_length="140">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67514" g_stop="67563" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="149" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67564" i_stop="69978" i_length="2415">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69979" g_stop="70054" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="225" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70055" i_stop="71413" i_length="1359">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.866" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71414" g_stop="71611" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="423" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71612" i_stop="71689" i_length="78">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.379" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71690" g_stop="72096" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="830" r_length="407" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="72097" i_stop="72258" i_length="162">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="72259" g_stop="72313" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="831" r_stop="885" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0111F22.2" gen_strand="+" ref_id="SGN-M8408" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0111F22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67275" e_stop="67373"/>
          <exon e_start="67514" e_stop="67563"/>
          <exon e_start="69979" e_stop="70054"/>
          <exon e_start="71414" e_stop="71611"/>
          <exon e_start="71690" e_stop="72096"/>
          <exon e_start="72259" e_stop="72313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAACTCCGACGAGGATTCCGACGAATACTATGGAAGTCTGTTATCACTCAAAATTCAACAATTTTCACTTTTTTCAATCACCTCCGCTCCATTTCTGTAATTATCTATCTATTTTTATGTTTTTCCTATATTTGTCGTTTTTTTCGTATTCATAATTGCTCGTGTGATGCGTAAATGCGTTGTAAAATTAAGTGAAGCATCTTCTGATCCATATTGTGATTTGATTGTTGTTTTAGGGAAGAAGAAAGGAAAGTTATCGCAGTCGCTGTCGCCATCTCTGCATCCAGTAAATTTCTAATTCCGTCTAAATTTTTGTTTGAGCTTATTGATAGAGCAATGACTTACTTTTTGGCAGTGTTCTCTGTTTATAATTTTGTGAATTTAGTTACTTTTTGAAATTCTGTTGTTTTGACTTTTGAATGAATTATTAATAAGAACAAAACATTGCTTTAGGGTTGCGAACATCTGTTGTGTTGCCGATATCAGTTTAATTTGTTTAGTATTTTTTTGAAATGTTGAACTGTGTTGCTGTTGGCGATTTGGATTCTTCACTGTTCTAGGTTGAATTGGTACTCGGTAAGTAAGCCAAATACATGAAAAGGACTGTGTTTGTGTGAGAGAGAAGATAGACGATGGGTTCAATCAATGAATATATATGCTAAGGTTCAATCAATGAATATATATGTTTTAGCAATGTTATGCATGGAAGGAAAGAATTTATACAACAATAATAACGCTTCAGTCGCAAACAAGTTGTGTCGGCTACTTGAAGTTCTTCATATTGTCTACTTGCATATGAATCTCTAATAGGGATAAAAGACTTCGAAAGCATAGGACCTAATGCCTCAAGGACCATCAGCTTAGTGTTGCCACTGGGCAAGCCCGCATTGGATAAATCATAAATGTAGAGGTTAGGGACACACACAATATTGATAGGAATTGTTGTGATGGAAGAATTGTTTACAGTGAAAAGGAAGTAAAATGAGCATGGTCTAGAAAGTGGCATGATGATAGCTAGTACTATATTGATGAAAAAGGTCAGAATGTTAAGCAGCCCATTGGACTATGTATGGGGAGTTGAATAGTGGTTGACGAAGTATACATGGAACTCCGCTGGTAGAACATCAAAGAAGAGTCATTTTACTTATCATCAGCTGAAGCCTTAAAGTTTACTCTAGCCTGAAAATGCAAATAAAGTAGGTCTGTGCCTTCACTATTTCTTGTTCTTAGTCACTTAGTGAGGACTTTGGTCCCCTCCTTTTGCAACTCCACTTAAGCATACTATAGCCCCTTCAAGTTTTCCTGAATTGATAACTTACACTATGTTTGGATCATTGTTATCCATTGTATTGTATTGTATTGTTACTATACCTAAAATGTTTGTTTTGATTGTTACTTAAAATGTATTGTACTGTATTGTTAAATTTCGTTGTTACGTAACAATGGAAACCCCTATTTTATGGAACAACCAATTTGGTGTGTTCCCATTGTTACTTAATTTCTTTTTTCAATTATATTTTTACATAATATTTTAAAATACTATTTTACCCTTTACCTTAATTATTTAAATCTAGTCAAACCTCCTACCCTAGAATAATTAAGGATATTTAATTAAATTTATAAATTATAATACAGTACGATACAATCAAACCAAACAATTAAAATGTTACTAAACAACAACAAACAATACAATCTAGCCAAACATTGTATCTACCATACAATACAGTACAATAGAGTACAATACAATACATTATGAAACAATGGGTAACAATGATCCAAACAAAGTGTTAAGGTTCCTTAATCTCTTGAAGGATGTTGGCAAGATCCCAAATCCATGATAGCTCTCTTGGATGCTATTGGAACTGTTGGAAACTAGAATTTCATTCTCTTTCTTGAACGAAGCTTCACTTACTAGCAAAGTGATGCTATTATGATTTTGTTCTGCATGGCTGCATTCTTTGCTGATCAGCAATCAGTATGTTAAGCATACACCTACTTTTCTTATGAGAAGCTTCTTGAAGAATTTATTTATTTGTAGAAGTGTGTCATTCTAGTTCTTCTATTTTTTTAGGTAAAACATGTTTGAAATGTATCTAATTATGAACAAGGGGATGATACTTGGCAACACAAAAAAGGAATCTAGAAAAGCTAATTTCGAATAGAGGGAAAATATGTTCAATGCCCGTCACCAGTAGGTGTGAAATTGTGGTTTCAGGAGAAAGTCATGTCTTTGTGTTCATATCCAAGTTTAGCATACACATTGTTGTTGTCCCTGGCTATAATGTTACTTTGTTTATGGTGGATCCAATCATTTTCTTGCAAATGATTTTTATTCTTTGTGAAACGAGAGAGTGCAGTGATATTAGCTACTCATTTTTATTTCACTGCATCACTCATGTGCAGTGATGTAATGATAAAGCTGCCTAAGAGATCATAGCTGCCATCTCTTCAGAAAGCTGGGTAGATTCTGTAAAGGGGAAGGAATAAATCAATTGACCAAAATTACTATGACTGCACTAGTTGACAGTGTCACTGAAAATTGGTTTTCATTCAAAAGCTAGATAAATCTTTTCTGTGCGTAACTTCAGTCTCATGTTTTATTTGTATGTGCCAGTACAAGATAGGTGTACAACTTTATAAATGATCTAGAGAATATTATTCTACTGCTCTAATTGACTTTGTTATACACAATTCATTTCAGCAATTGACTTCTAGCCATGGAAACTACTCCTGTTGCTCGTCTTTAAGGCAATCAGTTTGGAGAAATACAAAATTTTGTAAGTATCTTTTAGTCAGATATTGTTTTCCGATAGAGTGAATCTCAAATTGTAACTTTACAGCATGAACAAATAAAAGTGCATAATAGATAAGTACCGTGTAAGCTATTTTTGGCCACTTGATCTAGTTGGTGCCCTCATCATTTTATGTGACTCCGAGACGAAGCATCTAGTCCTTTTGTGAAGATTCATAATTGAATTTCTTGGTTCATATATGTTCCATCCCCTAGGAATGCTAGAACTACTATGCCTGATTGGGTCTTATTTGAGATTGTTCCCTCCTGCTTTTGGTATTTATGTCATAGAAAAGAAGCTAACTTATGTACTCTGTAGTTCACGGAGAGTGGTCCCAGCTAAGCTTCTGACCCTGCTAATTAAAAAAGATGATCAGAAATAATTTGAGATCTCTGAGTCATCTTACGGAAACGAGATCGGCCAAGCCAAAAGGATGAACTACCAGATTCACTAATAATCTGCATTTTGATGTGAATTTGCTGATCTGTACTTGCATCTACATGCTTGGACTGTCCTGCCAGTTCCAACCCTTCAACCACACATGCTGGAGAATTTTATATACTATTGAAGAAAAGAGTTCATAGTGAATGAGGTAGGTAATAGCCTGGCAGTTAAGTGGAGAAAGGTAGAGGTGTTACCAGCCAAGTTTCAAACCTTGCGTCACTGGCCCTTGGGGATATCTTGGTCATCCTGACAAAAAAGCAGCTTCTTTTTTTTTTTCTATAAGCTCGGAAAGAGGGATATATTGGGTTTGGAATTATCTTTTCTCTGCGTTTTTTACAAAACTTTTTTGTTTGATAGAGTTTTTGCAATAATAGGTAAATTATATTGGAAGTTTCCAAACTCAGATTTGCAGAACATTTTCCAAGATCTAAGAAACTGAGTGTGTAGATTTCCAAACTTGGTTGCCTGTTTTTGCAAAAATCCATCAGATAAATAATATTTGCAAAAACTGCAAAGAAATCCAAACTTAGTATTTCACGTAACAGAAACAAATAACACCTCTATGTTTTGTCTTGTTTGGTTTGAGAAGAAAAGGATGGTTATTAATCAGAAAAAAGAAGAAGAGTAAAGTTGGTTCTAGTATTTGGGGTTACATAGTCGGTCAGATATCAATTTTCTTTTGCTTGGTCGCTTCTATTTTCAGACCATTGGAAGAAACTGACTCTGATTTTGTCGTCTTGATTGGTTTTCTAAATGATTTTTGATTTTCCACATACTCTCTTTTCTATTTTTGTATCTGATGTTTGATAGTTATCCTGGTTTTTATTTGCTAATCTGTATCAGTCAAGCTGGAGGTTGAACAACTAGTGATCTCTTAATTGATTTTGCTCGTTCCTGCAGATGCCGTTCCAGGCAGTACAACTTTTGGCACAAGTAGGGAAGCATGTGTGTCCCTTCCCTCTTCCCCCCAACAAAAGAAGTATAATAGCGCTTTTGGAAATAACAGCTTTTATAGACAATATAGATCATTGAGAGACATTATTGCAAGGTCCGAACTTGCTAATACCAGCTCAGCCGGTGCTGCTTATCCACTGTCAGGTGCATTTCAAAATTGTTTTTCCATCTCTTTTTTTCACTTGGACGCGCTTTTACAGAGATACATCTTCTCTTTTACAGAACTAGAGTTGAGGTCAAAAGTAAGAGCAATTTGCTTTTACGCTGTCAGTGCTTTCTCTGCCATCTTTTTGTTCGTGATCATGCTTGTGCAACATCCTTTTGTACTGTTATTTGATCGATACCATAGGAAGGCTCACCATCTTGTTGCCAGGACATGGGCAACCTTGACCATTACACCATTTTATAGAGTCGAGTTTGAGGGCTTGGAGAATCTTCCTTCTCCAGATACTCCTGCAGTATATGTGTCCAACCATCAGAGCTTTTTGGACATATATACATTACTTACTCTTGGGAGAAACTTCAAGTTCATCAGCAAGACTGCAATTTTCCTAATTCCTATTATTGGATGGGCCATGTATCTGATGGGTCTAATTCCGTTAAGGCGCATGGACAGCAGAAGTCAATTGGTATTCTTTATTTGATGTGATTAATGACTAATATCCTCATAGCTATACTGAATCCTTAAGTTATACAATTGTATGTCAACTATTCAATCATTTTTTAAATGGGTTTGGATCTGATTGCAAGGTTCGATATTTCTATTTTCTTATTAGCTTTTATGATTTCAGGAATGTCTCAAGCGTTGCATGGATTTAGTCAAGAAGGGGGCATCTGTCTTTTTCT</genome_strand>
        <mrna_strand>GTTTAACTCCGACGAGGATTCCGACGAATACTATGGAAGTCTGTTATCACTCAAAATTCAACAATTTTCACTTTTTTCAATCACCTCCGCTCCATTTCT............................................................................................................................................GGAAGAAGAAAGGAAAGTTATCGCAGTCGCTGTCGCCATCTCTGCATCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTGACTTCTAGCCATGGAAACTACTCCTGTTGCTCGTCTTTAAGGCAATCAGTTTGGAGAAATACAAAATTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCGTTCCAGGCAGTACAACTTTTGGCACAAGTAGGGAAGCATGTGTGTCCCTTCCCTCTTCCCCCCAACAAAAGAAGTATAATAGCGCTTTTGGAAATAACAGCTTTTATAGACAATATAGATCATTGAGAGACATTATTGCAAGGTCCGAACTTGCTAATACCAGCTCAGCCGGTGCTGCTTATCCACTGTCAG..............................................................................AACTAGAGTTGAGGTCAAAAGTAAGAGCAATTTGCTTTTACGCTGTCAGTGCTTTCTCTGCCATCTTTTTGTTCGTGATCATGCTTGTGCAACATCCTTTTGTACTGTTATTTGATCGATACCATAGGAAGGCTCACCATCTTGTTGCCAGGACATGGGCAACCTTGACCATTACACCATTTTATAGAGTCGAGTTTGAGGGCTTGGAGAATCTTCCTTCTCCAGATACTCCTGCAGTATATGTGTCCAACCATCAGAGCTTTTTGGACATATATACATTACTTACTCTTGGGAGAAACTTCAAGTTCATCAGCAAGACTGCAATTTTCCTAATTCCTATTATTGGATGGGCCATGTATCTGATGGGTCTAATTCCGTTAAGGCGCATGGACAGCAGAAGTCAATTG..................................................................................................................................................................GAATGTCTCAAGCGTTGCATGGATTTAGTCAAGAAGGGGGCATCTGTCTTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0111F22-q48IJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8408-2" ref_strand="+" ref_description="SGN-M8408-2 C2_At4g30580-2 [cosii_markers]">
      <seq>gccatctatgcatccacaattgactgctggccatggaaactactcctgttgctcgtctttaaggcaatcagtctggagaaatacaaaattttacgccgtcccaggcagttcaacttttggcacaagtagggaagcctgtgtctcccttccctcttccccccaacaaaagaagtataatagcggttttggaaataatagcttttatagacaacatagatcattgagacacattattgcaaggtccgaacttgctaataccagctcagctggtgctgcttatccactatcagaactagagttgagatcaaaagtaagagcgatttgcttttacgctgtcagtgctttctctgccatctttttgttcgtgatcatgcttgtgcaacatccttttgtactgttatttgatcgatactataggaaggctcaccatcttgttgccaggacatgggcaaccttgaccattactccattttatagagtcgagtttgagggcttggagaatcttccttctccagatactcctgcagtatatgtgtccaaccatcagagctttctggacatatatacattacttactcttgggaggaacttcaagttcatcagcaagactgcaattttcctaattcctattattggatgggccatgtatctgatgggtctgattccnattaggcgcatggacagcagaagtcaattggaatgttctcagcgttgcatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0111F22-q48IJ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0111F22.2" temp_strand="+" temp_description="C07HBa0111F22.2  AC212630.2 htgs_phase:2 submitted_to_sgn_as:gi|167860209|gb|AC212630.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0111F22, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="69664" stop="72403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69979" g_stop="70054" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="92" r_length="76" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70055" i_stop="71413" i_length="1359">
            <donor d_prob="0.903" d_score="0.98"/>
            <acceptor a_prob="0.866" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71414" g_stop="71611" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="290" r_length="198" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71612" i_stop="71689" i_length="78">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.379" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71690" g_stop="72096" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="697" r_length="407" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72097" i_stop="72258" i_length="162">
            <donor d_prob="0.915" d_score="0.92"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72259" g_stop="72282" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="721" r_length="24" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0111F22.2" gen_strand="+" ref_id="SGN-M8408-2" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0111F22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8408-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69979" e_stop="70054"/>
          <exon e_start="71414" e_stop="71611"/>
          <exon e_start="71690" e_stop="72096"/>
          <exon e_start="72259" e_stop="72282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGACTTCTAGCCATGGAAACTACTCCTGTTGCTCGTCTTTAAGGCAATCAGTTTGGAGAAATACAAAATTTTGTAAGTATCTTTTAGTCAGATATTGTTTTCCGATAGAGTGAATCTCAAATTGTAACTTTACAGCATGAACAAATAAAAGTGCATAATAGATAAGTACCGTGTAAGCTATTTTTGGCCACTTGATCTAGTTGGTGCCCTCATCATTTTATGTGACTCCGAGACGAAGCATCTAGTCCTTTTGTGAAGATTCATAATTGAATTTCTTGGTTCATATATGTTCCATCCCCTAGGAATGCTAGAACTACTATGCCTGATTGGGTCTTATTTGAGATTGTTCCCTCCTGCTTTTGGTATTTATGTCATAGAAAAGAAGCTAACTTATGTACTCTGTAGTTCACGGAGAGTGGTCCCAGCTAAGCTTCTGACCCTGCTAATTAAAAAAGATGATCAGAAATAATTTGAGATCTCTGAGTCATCTTACGGAAACGAGATCGGCCAAGCCAAAAGGATGAACTACCAGATTCACTAATAATCTGCATTTTGATGTGAATTTGCTGATCTGTACTTGCATCTACATGCTTGGACTGTCCTGCCAGTTCCAACCCTTCAACCACACATGCTGGAGAATTTTATATACTATTGAAGAAAAGAGTTCATAGTGAATGAGGTAGGTAATAGCCTGGCAGTTAAGTGGAGAAAGGTAGAGGTGTTACCAGCCAAGTTTCAAACCTTGCGTCACTGGCCCTTGGGGATATCTTGGTCATCCTGACAAAAAAGCAGCTTCTTTTTTTTTTTCTATAAGCTCGGAAAGAGGGATATATTGGGTTTGGAATTATCTTTTCTCTGCGTTTTTTACAAAACTTTTTTGTTTGATAGAGTTTTTGCAATAATAGGTAAATTATATTGGAAGTTTCCAAACTCAGATTTGCAGAACATTTTCCAAGATCTAAGAAACTGAGTGTGTAGATTTCCAAACTTGGTTGCCTGTTTTTGCAAAAATCCATCAGATAAATAATATTTGCAAAAACTGCAAAGAAATCCAAACTTAGTATTTCACGTAACAGAAACAAATAACACCTCTATGTTTTGTCTTGTTTGGTTTGAGAAGAAAAGGATGGTTATTAATCAGAAAAAAGAAGAAGAGTAAAGTTGGTTCTAGTATTTGGGGTTACATAGTCGGTCAGATATCAATTTTCTTTTGCTTGGTCGCTTCTATTTTCAGACCATTGGAAGAAACTGACTCTGATTTTGTCGTCTTGATTGGTTTTCTAAATGATTTTTGATTTTCCACATACTCTCTTTTCTATTTTTGTATCTGATGTTTGATAGTTATCCTGGTTTTTATTTGCTAATCTGTATCAGTCAAGCTGGAGGTTGAACAACTAGTGATCTCTTAATTGATTTTGCTCGTTCCTGCAGATGCCGTTCCAGGCAGTACAACTTTTGGCACAAGTAGGGAAGCATGTGTGTCCCTTCCCTCTTCCCCCCAACAAAAGAAGTATAATAGCGCTTTTGGAAATAACAGCTTTTATAGACAATATAGATCATTGAGAGACATTATTGCAAGGTCCGAACTTGCTAATACCAGCTCAGCCGGTGCTGCTTATCCACTGTCAGGTGCATTTCAAAATTGTTTTTCCATCTCTTTTTTTCACTTGGACGCGCTTTTACAGAGATACATCTTCTCTTTTACAGAACTAGAGTTGAGGTCAAAAGTAAGAGCAATTTGCTTTTACGCTGTCAGTGCTTTCTCTGCCATCTTTTTGTTCGTGATCATGCTTGTGCAACATCCTTTTGTACTGTTATTTGATCGATACCATAGGAAGGCTCACCATCTTGTTGCCAGGACATGGGCAACCTTGACCATTACACCATTTTATAGAGTCGAGTTTGAGGGCTTGGAGAATCTTCCTTCTCCAGATACTCCTGCAGTATATGTGTCCAACCATCAGAGCTTTTTGGACATATATACATTACTTACTCTTGGGAGAAACTTCAAGTTCATCAGCAAGACTGCAATTTTCCTAATTCCTATTATTGGATGGGCCATGTATCTGATGGGTCTAATTCCGTTAAGGCGCATGGACAGCAGAAGTCAATTGGTATTCTTTATTTGATGTGATTAATGACTAATATCCTCATAGCTATACTGAATCCTTAAGTTATACAATTGTATGTCAACTATTCAATCATTTTTTAAATGGGTTTGGATCTGATTGCAAGGTTCGATATTTCTATTTTCTTATTAGCTTTTATGATTTCAGGAATGTCTCAAGCGTTGCATGGAT</genome_strand>
        <mrna_strand>CAATTGACTGCTGGCCATGGAAACTACTCCTGTTGCTCGTCTTTAAGGCAATCAGTCTGGAGAAATACAAAATTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCCGTCCCAGGCAGTTCAACTTTTGGCACAAGTAGGGAAGCCTGTGTCTCCCTTCCCTCTTCCCCCCAACAAAAGAAGTATAATAGCGGTTTTGGAAATAATAGCTTTTATAGACAACATAGATCATTGAGACACATTATTGCAAGGTCCGAACTTGCTAATACCAGCTCAGCTGGTGCTGCTTATCCACTATCAG..............................................................................AACTAGAGTTGAGATCAAAAGTAAGAGCGATTTGCTTTTACGCTGTCAGTGCTTTCTCTGCCATCTTTTTGTTCGTGATCATGCTTGTGCAACATCCTTTTGTACTGTTATTTGATCGATACTATAGGAAGGCTCACCATCTTGTTGCCAGGACATGGGCAACCTTGACCATTACTCCATTTTATAGAGTCGAGTTTGAGGGCTTGGAGAATCTTCCTTCTCCAGATACTCCTGCAGTATATGTGTCCAACCATCAGAGCTTTCTGGACATATATACATTACTTACTCTTGGGAGGAACTTCAAGTTCATCAGCAAGACTGCAATTTTCCTAATTCCTATTATTGGATGGGCCATGTATCTGATGGGTCTGATTCCNATTAGGCGCATGGACAGCAGAAGTCAATTG..................................................................................................................................................................GAATGTTCTCAGCGTTGCATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0111F22-q48IJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M99-R" ref_strand="+" ref_description="SGN-M99-R TG342-R [rflp_markers_reverse]">
      <seq>agaagtgatacaatagaaaataaaatgccagcggcattattacctagatctcccaagaagaaaacgacctgtagtggattccttttgggtattaaatcccccacagtacacaacggataagctagggggcaaggatgcaatatgctgccaagtgagcaaagcacctcgcctgcgagcacggggactgaactcatccatggctgtattaacaatctgaaatgaaaaacctggcggctcaacgcctttcagctggaatgtgtagagtctatgtcaagggagcaaagcactcaataatccatgcagtaaggggtcatttcgttgccggctaaagttatgcaggtattagttattcaataatccatgaatatttttttaactttctcccggagttaaattataaaagtcatgtttggccataaaattctaaaagccatatttggccatatcactcacaaaaattccaaaacaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0111F22-q48IJ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0111F22.2" temp_strand="+" temp_description="C07HBa0111F22.2  AC212630.2 htgs_phase:2 submitted_to_sgn_as:gi|167860209|gb|AC212630.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0111F22, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="104486" stop="105557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104786" g_stop="105257" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0111F22.2" gen_strand="+" ref_id="SGN-M99-R" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0111F22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M99-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104786" e_stop="105257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTGATACAATAGAAAATAAAATGCCAGCGGCATTATTACCTAGATCTCCCAAGAAGAAAACGACCTGTAGTGGATTCCTTTTGGGTATTAAATCCCCCACAGTACACAACGGATAAGCTAGGGGGCAAGGATGCAATATGCTGCCAAGTGAGCAAAGCACCTCGCCTGCGAGCACGGGGACTGAACTCATCCATGGTTGTATTAACAATCTGAAATGAAAAACCTGGCGGCTCAACGCCTTTCAGCTGGAATGTGTAGAGTCTATGTCAAGGGAGCAAAGCACTCAATAATCCATGCAGTAAGGGGTCATTTCGTTGCCGGTTAAAGTTATGCAGGTATTAGTTATTCAATAATCCATGAATATTTTTTTAACTTTCTCCCGGAGTTAAATTATAAAAGTCATGTTTGGCCATAAAATTCTAAAAGTCATATTTGGCCATATCACTCACAAAAATTCCAAAACAATTC</genome_strand>
        <mrna_strand>AGAAGTGATACAATAGAAAATAAAATGCCAGCGGCATTATTACCTAGATCTCCCAAGAAGAAAACGACCTGTAGTGGATTCCTTTTGGGTATTAAATCCCCCACAGTACACAACGGATAAGCTAGGGGGCAAGGATGCAATATGCTGCCAAGTGAGCAAAGCACCTCGCCTGCGAGCACGGGGACTGAACTCATCCATGGCTGTATTAACAATCTGAAATGAAAAACCTGGCGGCTCAACGCCTTTCAGCTGGAATGTGTAGAGTCTATGTCAAGGGAGCAAAGCACTCAATAATCCATGCAGTAAGGGGTCATTTCGTTGCCGGCTAAAGTTATGCAGGTATTAGTTATTCAATAATCCATGAATATTTTTTTAACTTTCTCCCGGAGTTAAATTATAAAAGTCATGTTTGGCCATAAAATTCTAAAAGCCATATTTGGCCATATCACTCACAAAAATTCCAAAACAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0111F22-q48IJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M99-F" ref_strand="+" ref_description="SGN-M99-F TG342-F [rflp_markers_forward]">
      <seq>nagtcgacctgcagagtggcatatattcaccctatatcctggtaaactagtttttcagataaccattccactcccactaaacttagaccttaaaactgtataacctcgacttgattttcgtaaaacaaatattgaagagttgtctagttcagtcgagctcgaatatattatagcttagtttagctctactccttattatagcaagtttggttgatctcagcttgacatattattgcaataaactctgtctctatttcgatttggctcggcttgttcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0111F22-q48IJ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0111F22.2" temp_strand="-" temp_description="C07HBa0111F22.2  AC212630.2 htgs_phase:2 submitted_to_sgn_as:gi|167860209|gb|AC212630.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0111F22, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="107445" stop="106572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107152" g_stop="106872" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0111F22.2" gen_strand="-" ref_id="SGN-M99-F" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0111F22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M99-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107152" e_stop="106872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCATGAACTGCAGAGTGGTATATATTCACCCTATATCCTGGTAAACTAGTTTTTCAGATAACCATTCCACTCCCACTAAACTTAGACCTTAAAACTGTATAACCTCAACTTGATTTTCGTAAAACAAATATTGAAGAGTTGTCTAGTTCAGTCGAGCTCGAATATATTATAGCTTAGTTTAGCTCTACTCCTTATTATAGCAAGTTTGGTTGATCTCAGCTTGACATAGTATTGTAATAAACTCTGTCTCTATTTCGATTTGGCTCGGCTTGTTCAAC</genome_strand>
        <mrna_strand>NAGTC--GACCTGCAGAGTGGCATATATTCACCCTATATCCTGGTAAACTAGTTTTTCAGATAACCATTCCACTCCCACTAAACTTAGACCTTAAAACTGTATAACCTCGACTTGATTTTCGTAAAACAAATATTGAAGAGTTGTCTAGTTCAGTCGAGCTCGAATATATTATAGCTTAGTTTAGCTCTACTCCTTATTATAGCAAGTTTGGTTGATCTCAGCTTGACATATTATTGCAATAAACTCTGTCTCTATTTCGATTTGGCTCGGCTTGTTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>6</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="9774" PGL_stop="15598"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9774" e_stop="10061"/>
            <exon e_start="10156" e_stop="10210"/>
            <exon e_start="11688" e_stop="11926"/>
            <exon e_start="12249" e_stop="12392"/>
            <exon e_start="12647" e_stop="12798"/>
            <exon e_start="13358" e_stop="13480"/>
            <exon e_start="13598" e_stop="13775"/>
            <exon e_start="13879" e_stop="13997"/>
            <exon e_start="14661" e_stop="14775"/>
            <exon e_start="14979" e_stop="15405"/>
            <exon e_start="15586" e_stop="15598"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.963" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.825" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.863" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.619" acc_prob="0.795" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.775" e_score="0.993"/>
          <exon-only e_score="0.538"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9774" e_stop="10061" e_length="288"/>
          </exon>
          <intron i_serial="1" don_prob="0.963" acc_prob="1.000">
            <gDNA_intron_boundary i_start="10062" i_stop="10155" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10156" e_stop="10210" e_length="55"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.971">
            <gDNA_intron_boundary i_start="10211" i_stop="11687" i_length="1477"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11688" e_stop="11926" e_length="239"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.994">
            <gDNA_intron_boundary i_start="11927" i_stop="12248" i_length="322"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12249" e_stop="12392" e_length="144"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.825">
            <gDNA_intron_boundary i_start="12393" i_stop="12646" i_length="254"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12647" e_stop="12798" e_length="152"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="12799" i_stop="13357" i_length="559"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="13358" e_stop="13480" e_length="123"/>
          </exon>
          <intron i_serial="6" don_prob="0.863" acc_prob="0.994">
            <gDNA_intron_boundary i_start="13481" i_stop="13597" i_length="117"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="13598" e_stop="13775" e_length="178"/>
          </exon>
          <intron i_serial="7" don_prob="0.619" acc_prob="0.795">
            <gDNA_intron_boundary i_start="13776" i_stop="13878" i_length="103"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="13879" e_stop="13997" e_length="119"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.973">
            <gDNA_intron_boundary i_start="13998" i_stop="14660" i_length="663"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="14661" e_stop="14775" e_length="115"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.952">
            <gDNA_intron_boundary i_start="14776" i_stop="14978" i_length="203"/>
          </intron>
          <exon e_serial="10" e_score="0.993">
            <gDNA_exon_boundary e_start="14979" e_stop="15405" e_length="427"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.775">
            <gDNA_intron_boundary i_start="15406" i_stop="15585" i_length="180"/>
          </intron>
          <exon e_serial="11" e_score="0.538">
            <gDNA_exon_boundary e_start="15586" e_stop="15598" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9774" stop="10061"/>
              <exon start="10156" stop="10210"/>
              <exon start="11688" stop="11926"/>
              <exon start="12249" stop="12392"/>
              <exon start="12647" stop="12798"/>
              <exon start="13358" stop="13480"/>
              <exon start="13598" stop="13775"/>
              <exon start="13879" stop="13997"/>
              <exon start="14661" stop="14775"/>
              <exon start="14979" stop="15405"/>
              <exon start="15586" stop="15598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M4664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13691" stop="13775"/>
              <exon start="13879" stop="13997"/>
              <exon start="14661" stop="14775"/>
              <exon start="14979" stop="15298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1631" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAATTGCTTAACCCCCATAGGCCCTAATAGCGGCAAATAAGTTTTTTTTGGGCCTTTCTCCTCCTTTCACCCTCTATCTTCAATAAAGAACCAATTTTTATGATAAAAGAATCAATTTTTACAGTAAAGAACCAATTTTTATTGGTTTAAGAAGAGGTGAGGGGTGAGAAGAGAAGGGTAAAGAACCATAAAATCTAAGTGGGGTGTTGTTTTTTTGTAAGTTCTTGTTCTGCAAATTTCTCTCTATAATGGCTTGCAGTGTTGCAGACTCTGGTTTCCTGGTCTTG : GCTTCCAAGAAAGGACCAGTTCATAGCACTAGAATTGGGCAAATTGCTTCTTCAG : GAGCATGTTGTTTAAAGTGGGAAAGTCTACCTCAGATAAGCTCGAAACAGAAAGGCTGCTTAATTTACTCGAGAAAGAAAAATGTTATACAAGCTGTTGCCGTTCCAATAGCACCTGCACCCTTAGACTCTGCAGAGGAAAGGAATCGATTAAGTGAAAAATATGGTTTTAGACAAATTGGAGAACCACTACCTGATAACGTTACAATGAGAGATATTACTGAGTCACTACCAAAGAAG : GTATTTGAGATTGACGATGGGAAGGCATTGAAGTCTGTTTTGATCTCAGTAACTTCATACACACTGGGGCTCTTCATGATTGCCAAAGCTCCATGGTATCTACTTCCCCTGGCCTGGGCTTGGACAGGAACAGCAGTTACAGGG : TTTTTTGTTATAGGACATGATTGCGCTCACAAATCCTTCTCAAAGAACAAATTATTGGAAGATATTGTTGGAACACTAGCCTTTTTGCCATTGATATATCCCTATGAGCCATGGAGGTTCAAGCATGATCGGCATCACGCAAAAACAAACAT : GTTGCACGAAGACACAGCTTGGCAGCCTGTTTGGAAGGAGGAGTTCGATTCAGTCCCTGCCCTGAGGAAGGCAATTATATTAGGTTACGGCCCTATTCGACCTTGGATGTCTATAGCTCACTG : GTGGCTCTGTCATTTCAATTTGAGTAAGTTCAGACCAAATGAAATTGACAGAGTGAAAATAAGTTTGGGTTGCGTCTTCGCTTTTATGGCAATCGGCTGGCCACTGATAATCTGGAAAACAGGGATTATTGGATGGATCAAGTTCTGGTTAATGCCATGGTTGGGTTATCATTTTTGG : ATGAGTACTTTTACAATGGTTCATCATACGGCTCCCCACATACCCTTCAAAACTTCTGATGAGTGGAATGCTGCTCAGGCCCAGCTGAATGGCACAGTTCACTGTGACTATCCTAGTTG : GATTGAGGTTCTTTGTCATGATATCAATGTTCATATTCCCCACCACATATCCCCCAGAATACCAAGTTATAATTTACGGGCAGCTCATCAATCTCTCCAAGAGAATTGGGGAAAG : TACCTTAACGAGGCTTCATGGAACTGGCGTCTAATGAAGACAATACTGACAGTATGTCATGTCTATGATAAGGAGCGGAATTATGTTCCATTTGATGAAATTGTCCCCGAAGAAGCCAAGCCAATCACATTCCTTAAAAAAGTAATGCCTGACTACGCTTGATTAGCGTGCACCTCAAAAGGTCAATTTTCACTTGCTTCATTCTTTGGGAAGATATCCTTTCAATCCTATTGGGTCCGGTCAAGGGCCCAAATGTCAAGTTCTCACAAATATTGTAAGACTTGTTTTAACACATTAAAGAGAGAAATATCTTCTCAAAAAGTTTCTTGGTAGTGTTAGTTTAGTATACAATAATTTAACTTTCTTGCGATTTGTCTTCTTTTTTTAGAAGTATCCATGAATAACATGTTGCTTATTAAATACCAAA : ATTGTAAAACCTG</gDNA_template>
            <first_frame> *  I  A  *  P  P  *  A  L  I  A  A  N  K  F  F  L  G  L  S  P  P  F  T  L  Y  L  Q  *  R  T  N  F  Y  D  K  R  I  N  F  Y  S  K  E  P  I  F  I  G  L  R  R  G  E  G  *  E  E  K  G  K  E  P  *  N  L  S  G  V  L  F  F  C  K  F  L  F  C  K  F  L  S  I  M  A  C  S  V  A  D  S  G  F  L  V  L  :  A  S  K  K  G  P  V  H  S  T  R  I  G  Q  I  A  S  S   : G  A  C  C  L  K  W  E  S  L  P  Q  I  S  S  K  Q  K  G  C  L  I  Y  S  R  K  K  N  V  I  Q  A  V  A  V  P  I  A  P  A  P  L  D  S  A  E  E  R  N  R  L  S  E  K  Y  G  F  R  Q  I  G  E  P  L  P  D  N  V  T  M  R  D  I  T  E  S  L  P  K  K  :  V  F  E  I  D  D  G  K  A  L  K  S  V  L  I  S  V  T  S  Y  T  L  G  L  F  M  I  A  K  A  P  W  Y  L  L  P  L  A  W  A  W  T  G  T  A  V  T  G  :  F  F  V  I  G  H  D  C  A  H  K  S  F  S  K  N  K  L  L  E  D  I  V  G  T  L  A  F  L  P  L  I  Y  P  Y  E  P  W  R  F  K  H  D  R  H  H  A  K  T  N  M :   L  H  E  D  T  A  W  Q  P  V  W  K  E  E  F  D  S  V  P  A  L  R  K  A  I  I  L  G  Y  G  P  I  R  P  W  M  S  I  A  H  W :   W  L  C  H  F  N  L  S  K  F  R  P  N  E  I  D  R  V  K  I  S  L  G  C  V  F  A  F  M  A  I  G  W  P  L  I  I  W  K  T  G  I  I  G  W  I  K  F  W  L  M  P  W  L  G  Y  H  F  W  :  M  S  T  F  T  M  V  H  H  T  A  P  H  I  P  F  K  T  S  D  E  W  N  A  A  Q  A  Q  L  N  G  T  V  H  C  D  Y  P  S  W :   I  E  V  L  C  H  D  I  N  V  H  I  P  H  H  I  S  P  R  I  P  S  Y  N  L  R  A  A  H  Q  S  L  Q  E  N  W  G  K  :  Y  L  N  E  A  S  W  N  W  R  L  M  K  T  I  L  T  V  C  H  V  Y  D  K  E  R  N  Y  V  P  F  D  E  I  V  P  E  E  A  K  P  I  T  F  L  K  K  V  M  P  D  Y  A  *  L  A  C  T  S  K  G  Q  F  S  L  A  S  F  F  G  K  I  S  F  Q  S  Y  W  V  R  S  R  A  Q  M  S  S  S  H  K  Y  C  K  T  C  F  N  T  L  K  R  E  I  S  S  Q  K  V  S  W  *  C  *  F  S  I  Q  *  F  N  F  L  A  I  C  L  L  F  L  E  V  S  M  N  N  M  L  L  I  K  Y  Q   : N  C  K  T   </first_frame>
            <second_frame>  E  L  L  N  P  H  R  P  *  *  R  Q  I  S  F  F  W  A  F  L  L  L  S  P  S  I  F  N  K  E  P  I  F  M  I  K  E  S  I  F  T  V  K  N  Q  F  L  L  V  *  E  E  V  R  G  E  K  R  R  V  K  N  H  K  I  *  V  G  C  C  F  F  V  S  S  C  S  A  N  F  S  L  *  W  L  A  V  L  Q  T  L  V  S  W  S  W :   L  P  R  K  D  Q  F  I  A  L  E  L  G  K  L  L  L  Q  :  E  H  V  V  *  S  G  K  V  Y  L  R  *  A  R  N  R  K  A  A  *  F  T  R  E  R  K  M  L  Y  K  L  L  P  F  Q  *  H  L  H  P  *  T  L  Q  R  K  G  I  D  *  V  K  N  M  V  L  D  K  L  E  N  H  Y  L  I  T  L  Q  *  E  I  L  L  S  H  Y  Q  R  R :   Y  L  R  L  T  M  G  R  H  *  S  L  F  *  S  Q  *  L  H  T  H  W  G  S  S  *  L  P  K  L  H  G  I  Y  F  P  W  P  G  L  G  Q  E  Q  Q  L  Q  G :   F  L  L  *  D  M  I  A  L  T  N  P  S  Q  R  T  N  Y  W  K  I  L  L  E  H  *  P  F  C  H  *  Y  I  P  M  S  H  G  G  S  S  M  I  G  I  T  Q  K  Q  T   : C  C  T  K  T  Q  L  G  S  L  F  G  R  R  S  S  I  Q  S  L  P  *  G  R  Q  L  Y  *  V  T  A  L  F  D  L  G  C  L  *  L  T   : G  G  S  V  I  S  I  *  V  S  S  D  Q  M  K  L  T  E  *  K  *  V  W  V  A  S  S  L  L  W  Q  S  A  G  H  *  *  S  G  K  Q  G  L  L  D  G  S  S  S  G  *  C  H  G  W  V  I  I  F  G :   *  V  L  L  Q  W  F  I  I  R  L  P  T  Y  P  S  K  L  L  M  S  G  M  L  L  R  P  S  *  M  A  Q  F  T  V  T  I  L  V   : G  L  R  F  F  V  M  I  S  M  F  I  F  P  T  T  Y  P  P  E  Y  Q  V  I  I  Y  G  Q  L  I  N  L  S  K  R  I  G  E  S :   T  L  T  R  L  H  G  T  G  V  *  *  R  Q  Y  *  Q  Y  V  M  S  M  I  R  S  G  I  M  F  H  L  M  K  L  S  P  K  K  P  S  Q  S  H  S  L  K  K  *  C  L  T  T  L  D  *  R  A  P  Q  K  V  N  F  H  L  L  H  S  L  G  R  Y  P  F  N  P  I  G  S  G  Q  G  P  K  C  Q  V  L  T  N  I  V  R  L  V  L  T  H  *  R  E  K  Y  L  L  K  K  F  L  G  S  V  S  L  V  Y  N  N  L  T  F  L  R  F  V  F  F  F  *  K  Y  P  *  I  T  C  C  L  L  N  T  K  :  I  V  K  P  </second_frame>
            <third_frame>   N  C  L  T  P  I  G  P  N  S  G  K  *  V  F  F  G  P  F  S  S  F  H  P  L  S  S  I  K  N  Q  F  L  *  *  K  N  Q  F  L  Q  *  R  T  N  F  Y  W  F  K  K  R  *  G  V  R  R  E  G  *  R  T  I  K  S  K  W  G  V  V  F  L  *  V  L  V  L  Q  I  S  L  Y  N  G  L  Q  C  C  R  L  W  F  P  G  L   : G  F  Q  E  R  T  S  S  *  H  *  N  W  A  N  C  F  F  R :   S  M  L  F  K  V  G  K  S  T  S  D  K  L  E  T  E  R  L  L  N  L  L  E  K  E  K  C  Y  T  S  C  C  R  S  N  S  T  C  T  L  R  L  C  R  G  K  E  S  I  K  *  K  I  W  F  *  T  N  W  R  T  T  T  *  *  R  Y  N  E  R  Y  Y  *  V  T  T  K  E   : G  I  *  D  *  R  W  E  G  I  E  V  C  F  D  L  S  N  F  I  H  T  G  A  L  H  D  C  Q  S  S  M  V  S  T  S  P  G  L  G  L  D  R  N  S  S  Y  R   : V  F  C  Y  R  T  *  L  R  S  Q  I  L  L  K  E  Q  I  I  G  R  Y  C  W  N  T  S  L  F  A  I  D  I  S  L  *  A  M  E  V  Q  A  *  S  A  S  R  K  N  K  H  :  V  A  R  R  H  S  L  A  A  C  L  E  G  G  V  R  F  S  P  C  P  E  E  G  N  Y  I  R  L  R  P  Y  S  T  L  D  V  Y  S  S  L  :  V  A  L  S  F  Q  F  E  *  V  Q  T  K  *  N  *  Q  S  E  N  K  F  G  L  R  L  R  F  Y  G  N  R  L  A  T  D  N  L  E  N  R  D  Y  W  M  D  Q  V  L  V  N  A  M  V  G  L  S  F  L   : D  E  Y  F  Y  N  G  S  S  Y  G  S  P  H  T  L  Q  N  F  *  *  V  E  C  C  S  G  P  A  E  W  H  S  S  L  *  L  S  *  L  :  D  *  G  S  L  S  *  Y  Q  C  S  Y  S  P  P  H  I  P  Q  N  T  K  L  *  F  T  G  S  S  S  I  S  P  R  E  L  G  K   : V  P  *  R  G  F  M  E  L  A  S  N  E  D  N  T  D  S  M  S  C  L  *  *  G  A  E  L  C  S  I  *  *  N  C  P  R  R  S  Q  A  N  H  I  P  *  K  S  N  A  *  L  R  L  I  S  V  H  L  K  R  S  I  F  T  C  F  I  L  W  E  D  I  L  S  I  L  L  G  P  V  K  G  P  N  V  K  F  S  Q  I  L  *  D  L  F  *  H  I  K  E  R  N  I  F  S  K  S  F  L  V  V  L  V  *  Y  T  I  I  *  L  S  C  D  L  S  S  F  F  R  S  I  H  E  *  H  V  A  Y  *  I  P  K :   L  *  N  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0111F22.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9966" stop="10061"/>
                    <exon start="10156" stop="10210"/>
                    <exon start="11688" stop="11926"/>
                    <exon start="12249" stop="12392"/>
                    <exon start="12647" stop="12798"/>
                    <exon start="13358" stop="13480"/>
                    <exon start="13598" stop="13775"/>
                    <exon start="13879" stop="13997"/>
                    <exon start="14661" stop="14775"/>
                    <exon start="14979" stop="15140"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1380</number_coding_nucleotides>
                  <number_encoded_amino_acids>460</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLSGVLFFCKFLFCKFLSIMACSVADSGFLVLASKKGPVHSTRIGQIASSGACCLKWESLPQISSKQKGCLIYSRKKNVIQAVAVPIAPAPLDSAEERNRLSEKYGFRQIGEPLPDNVTMRDITESLPKKVFEIDDGKALKSVLISVTSYTLGLFMIAKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHDRHHAKTNMLHEDTAWQPVWKEEFDSVPALRKAIILGYGPIRPWMSIAHWWLCHFNLSKFRPNEIDRVKISLGCVFAFMAIGWPLIIWKTGIIGWIKFWLMPWLGYHFWMSTFTMVHHTAPHIPFKTSDEWNAAQAQLNGTVHCDYPSWIEVLCHDINVHIPHHISPRIPSYNLRAAHQSLQENWGKYLNEASWNWRLMKTILTVCHVYDKERNYVPFDEIVPEEAKPITFLKKVMPDYA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="67275" PGL_stop="72313"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67275" e_stop="67373"/>
            <exon e_start="67514" e_stop="67563"/>
            <exon e_start="69979" e_stop="70054"/>
            <exon e_start="71414" e_stop="71611"/>
            <exon e_start="71690" e_stop="72096"/>
            <exon e_start="72259" e_stop="72313"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.947" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.866" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.379" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67275" e_stop="67373" e_length="99"/>
          </exon>
          <intron i_serial="1" don_prob="0.947" acc_prob="0.993">
            <gDNA_intron_boundary i_start="67374" i_stop="67513" i_length="140"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67514" e_stop="67563" e_length="50"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.874">
            <gDNA_intron_boundary i_start="67564" i_stop="69978" i_length="2415"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69979" e_stop="70054" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.903" acc_prob="0.866">
            <gDNA_intron_boundary i_start="70055" i_stop="71413" i_length="1359"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71414" e_stop="71611" e_length="198"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.379">
            <gDNA_intron_boundary i_start="71612" i_stop="71689" i_length="78"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71690" e_stop="72096" e_length="407"/>
          </exon>
          <intron i_serial="5" don_prob="0.915" acc_prob="0.975">
            <gDNA_intron_boundary i_start="72097" i_stop="72258" i_length="162"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="72259" e_stop="72313" e_length="55"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67275" stop="67373"/>
              <exon start="67514" stop="67563"/>
              <exon start="69979" stop="70054"/>
              <exon start="71414" stop="71611"/>
              <exon start="71690" stop="72096"/>
              <exon start="72259" stop="72313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69979" stop="70054"/>
              <exon start="71414" stop="71611"/>
              <exon start="71690" stop="72096"/>
              <exon start="72259" stop="72282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8408-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTAACTCCGACGAGGATTCCGACGAATACTATGGAAGTCTGTTATCACTCAAAATTCAACAATTTTCACTTTTTTCAATCACCTCCGCTCCATTTCT : GGAAGAAGAAAGGAAAGTTATCGCAGTCGCTGTCGCCATCTCTGCATCCA : CAATTGACTTCTAGCCATGGAAACTACTCCTGTTGCTCGTCTTTAAGGCAATCAGTTTGGAGAAATACAAAATTTT : ATGCCGTTCCAGGCAGTACAACTTTTGGCACAAGTAGGGAAGCATGTGTGTCCCTTCCCTCTTCCCCCCAACAAAAGAAGTATAATAGCGCTTTTGGAAATAACAGCTTTTATAGACAATATAGATCATTGAGAGACATTATTGCAAGGTCCGAACTTGCTAATACCAGCTCAGCCGGTGCTGCTTATCCACTGTCAG : AACTAGAGTTGAGGTCAAAAGTAAGAGCAATTTGCTTTTACGCTGTCAGTGCTTTCTCTGCCATCTTTTTGTTCGTGATCATGCTTGTGCAACATCCTTTTGTACTGTTATTTGATCGATACCATAGGAAGGCTCACCATCTTGTTGCCAGGACATGGGCAACCTTGACCATTACACCATTTTATAGAGTCGAGTTTGAGGGCTTGGAGAATCTTCCTTCTCCAGATACTCCTGCAGTATATGTGTCCAACCATCAGAGCTTTTTGGACATATATACATTACTTACTCTTGGGAGAAACTTCAAGTTCATCAGCAAGACTGCAATTTTCCTAATTCCTATTATTGGATGGGCCATGTATCTGATGGGTCTAATTCCGTTAAGGCGCATGGACAGCAGAAGTCAATTG : GAATGTCTCAAGCGTTGCATGGATTTAGTCAAGAAGGGGGCATCTGTCTTTTTCT</gDNA_template>
            <first_frame> V  *  L  R  R  G  F  R  R  I  L  W  K  S  V  I  T  Q  N  S  T  I  F  T  F  F  N  H  L  R  S  I  S  :  G  R  R  K  E  S  Y  R  S  R  C  R  H  L  C  I  H :   N  *  L  L  A  M  E  T  T  P  V  A  R  L  *  G  N  Q  F  G  E  I  Q  N  F  :  M  P  F  Q  A  V  Q  L  L  A  Q  V  G  K  H  V  C  P  F  P  L  P  P  N  K  R  S  I  I  A  L  L  E  I  T  A  F  I  D  N  I  D  H  *  E  T  L  L  Q  G  P  N  L  L  I  P  A  Q  P  V  L  L  I  H  C  Q  :  N  *  S  *  G  Q  K  *  E  Q  F  A  F  T  L  S  V  L  S  L  P  S  F  C  S  *  S  C  L  C  N  I  L  L  Y  C  Y  L  I  D  T  I  G  R  L  T  I  L  L  P  G  H  G  Q  P  *  P  L  H  H  F  I  E  S  S  L  R  A  W  R  I  F  L  L  Q  I  L  L  Q  Y  M  C  P  T  I  R  A  F  W  T  Y  I  H  Y  L  L  L  G  E  T  S  S  S  S  A  R  L  Q  F  S  *  F  L  L  L  D  G  P  C  I  *  W  V  *  F  R  *  G  A  W  T  A  E  V  N  W :   N  V  S  S  V  A  W  I  *  S  R  R  G  H  L  S  F  S </first_frame>
            <second_frame>  F  N  S  D  E  D  S  D  E  Y  Y  G  S  L  L  S  L  K  I  Q  Q  F  S  L  F  S  I  T  S  A  P  F  L :   E  E  E  R  K  V  I  A  V  A  V  A  I  S  A  S   : T  I  D  F  *  P  W  K  L  L  L  L  L  V  F  K  A  I  S  L  E  K  Y  K  I  L :   C  R  S  R  Q  Y  N  F  W  H  K  *  G  S  M  C  V  P  S  L  F  P  P  T  K  E  V  *  *  R  F  W  K  *  Q  L  L  *  T  I  *  I  I  E  R  H  Y  C  K  V  R  T  C  *  Y  Q  L  S  R  C  C  L  S  T  V  R :   T  R  V  E  V  K  S  K  S  N  L  L  L  R  C  Q  C  F  L  C  H  L  F  V  R  D  H  A  C  A  T  S  F  C  T  V  I  *  S  I  P  *  E  G  S  P  S  C  C  Q  D  M  G  N  L  D  H  Y  T  I  L  *  S  R  V  *  G  L  G  E  S  S  F  S  R  Y  S  C  S  I  C  V  Q  P  S  E  L  F  G  H  I  Y  I  T  Y  S  W  E  K  L  Q  V  H  Q  Q  D  C  N  F  P  N  S  Y  Y  W  M  G  H  V  S  D  G  S  N  S  V  K  A  H  G  Q  Q  K  S  I   : G  M  S  Q  A  L  H  G  F  S  Q  E  G  G  I  C  L  F   </second_frame>
            <third_frame>   L  T  P  T  R  I  P  T  N  T  M  E  V  C  Y  H  S  K  F  N  N  F  H  F  F  Q  S  P  P  L  H  F   : W  K  K  K  G  K  L  S  Q  S  L  S  P  S  L  H  P  :  Q  L  T  S  S  H  G  N  Y  S  C  C  S  S  L  R  Q  S  V  W  R  N  T  K  F   : Y  A  V  P  G  S  T  T  F  G  T  S  R  E  A  C  V  S  L  P  S  S  P  Q  Q  K  K  Y  N  S  A  F  G  N  N  S  F  Y  R  Q  Y  R  S  L  R  D  I  I  A  R  S  E  L  A  N  T  S  S  A  G  A  A  Y  P  L  S   : E  L  E  L  R  S  K  V  R  A  I  C  F  Y  A  V  S  A  F  S  A  I  F  L  F  V  I  M  L  V  Q  H  P  F  V  L  L  F  D  R  Y  H  R  K  A  H  H  L  V  A  R  T  W  A  T  L  T  I  T  P  F  Y  R  V  E  F  E  G  L  E  N  L  P  S  P  D  T  P  A  V  Y  V  S  N  H  Q  S  F  L  D  I  Y  T  L  L  T  L  G  R  N  F  K  F  I  S  K  T  A  I  F  L  I  P  I  I  G  W  A  M  Y  L  M  G  L  I  P  L  R  R  M  D  S  R  S  Q  L  :  E  C  L  K  R  C  M  D  L  V  K  K  G  A  S  V  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0111F22.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67277" stop="67373"/>
                    <exon start="67514" stop="67563"/>
                    <exon start="69979" stop="70054"/>
                    <exon start="71414" stop="71611"/>
                    <exon start="71690" stop="72096"/>
                    <exon start="72259" stop="72312"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>882</number_coding_nucleotides>
                  <number_encoded_amino_acids>294</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTPTRIPTNTMEVCYHSKFNNFHFFQSPPLHFWKKKGKLSQSLSPSLHPQLTSSHGNYSCCSSLRQSVWRNTKFYAVPGSTTFGTSREACVSLPSSPQQKKYNSAFGNNSFYRQYRSLRDIIARSELANTSSAGAAYPLSELELRSKVRAICFYAVSAFSAIFLFVIMLVQHPFVLLFDRYHRKAHHLVARTWATLTITPFYRVEFEGLENLPSPDTPAVYVSNHQSFLDIYTLLTLGRNFKFISKTAIFLIPIIGWAMYLMGLIPLRRMDSRSQLECLKRCMDLVKKGASVFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="104786" PGL_stop="105257"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104786" e_stop="105257"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="104786" e_stop="105257" e_length="472"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104786" stop="105257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M99-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAGTGATACAATAGAAAATAAAATGCCAGCGGCATTATTACCTAGATCTCCCAAGAAGAAAACGACCTGTAGTGGATTCCTTTTGGGTATTAAATCCCCCACAGTACACAACGGATAAGCTAGGGGGCAAGGATGCAATATGCTGCCAAGTGAGCAAAGCACCTCGCCTGCGAGCACGGGGACTGAACTCATCCATGGTTGTATTAACAATCTGAAATGAAAAACCTGGCGGCTCAACGCCTTTCAGCTGGAATGTGTAGAGTCTATGTCAAGGGAGCAAAGCACTCAATAATCCATGCAGTAAGGGGTCATTTCGTTGCCGGTTAAAGTTATGCAGGTATTAGTTATTCAATAATCCATGAATATTTTTTTAACTTTCTCCCGGAGTTAAATTATAAAAGTCATGTTTGGCCATAAAATTCTAAAAGTCATATTTGGCCATATCACTCACAAAAATTCCAAAACAATTC</gDNA_template>
            <first_frame> R  S  D  T  I  E  N  K  M  P  A  A  L  L  P  R  S  P  K  K  K  T  T  C  S  G  F  L  L  G  I  K  S  P  T  V  H  N  G  *  A  R  G  Q  G  C  N  M  L  P  S  E  Q  S  T  S  P  A  S  T  G  T  E  L  I  H  G  C  I  N  N  L  K  *  K  T  W  R  L  N  A  F  Q  L  E  C  V  E  S  M  S  R  E  Q  S  T  Q  *  S  M  Q  *  G  V  I  S  L  P  V  K  V  M  Q  V  L  V  I  Q  *  S  M  N  I  F  L  T  F  S  R  S  *  I  I  K  V  M  F  G  H  K  I  L  K  V  I  F  G  H  I  T  H  K  N  S  K  T  I  </first_frame>
            <second_frame>  E  V  I  Q  *  K  I  K  C  Q  R  H  Y  Y  L  D  L  P  R  R  K  R  P  V  V  D  S  F  W  V  L  N  P  P  Q  Y  T  T  D  K  L  G  G  K  D  A  I  C  C  Q  V  S  K  A  P  R  L  R  A  R  G  L  N  S  S  M  V  V  L  T  I  *  N  E  K  P  G  G  S  T  P  F  S  W  N  V  *  S  L  C  Q  G  S  K  A  L  N  N  P  C  S  K  G  S  F  R  C  R  L  K  L  C  R  Y  *  L  F  N  N  P  *  I  F  F  *  L  S  P  G  V  K  L  *  K  S  C  L  A  I  K  F  *  K  S  Y  L  A  I  S  L  T  K  I  P  K  Q  F </second_frame>
            <third_frame>   K  *  Y  N  R  K  *  N  A  S  G  I  I  T  *  I  S  Q  E  E  N  D  L  *  W  I  P  F  G  Y  *  I  P  H  S  T  Q  R  I  S  *  G  A  R  M  Q  Y  A  A  K  *  A  K  H  L  A  C  E  H  G  D  *  T  H  P  W  L  Y  *  Q  S  E  M  K  N  L  A  A  Q  R  L  S  A  G  M  C  R  V  Y  V  K  G  A  K  H  S  I  I  H  A  V  R  G  H  F  V  A  G  *  S  Y  A  G  I  S  Y  S  I  I  H  E  Y  F  F  N  F  L  P  E  L  N  Y  K  S  H  V  W  P  *  N  S  K  S  H  I  W  P  Y  H  S  Q  K  F  Q  N  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0111F22.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104802" stop="105002"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIKCQRHYYLDLPRRKRPVVDSFWVLNPPQYTTDKLGGKDAICCQVSKAPRLRARGLNSSMVVLTI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="107152" PGL_stop="106872"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107152" e_stop="106872"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="107152" e_stop="106872" e_length="281"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107152" stop="106872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M99-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGGCATGAACTGCAGAGTGGTATATATTCACCCTATATCCTGGTAAACTAGTTTTTCAGATAACCATTCCACTCCCACTAAACTTAGACCTTAAAACTGTATAACCTCAACTTGATTTTCGTAAAACAAATATTGAAGAGTTGTCTAGTTCAGTCGAGCTCGAATATATTATAGCTTAGTTTAGCTCTACTCCTTATTATAGCAAGTTTGGTTGATCTCAGCTTGACATAGTATTGTAATAAACTCTGTCTCTATTTCGATTTGGCTCGGCTTGTTCAAC</gDNA_template>
            <first_frame> K  A  *  T  A  E  W  Y  I  F  T  L  Y  P  G  K  L  V  F  Q  I  T  I  P  L  P  L  N  L  D  L  K  T  V  *  P  Q  L  D  F  R  K  T  N  I  E  E  L  S  S  S  V  E  L  E  Y  I  I  A  *  F  S  S  T  P  Y  Y  S  K  F  G  *  S  Q  L  D  I  V  L  *  *  T  L  S  L  F  R  F  G  S  A  C  S   </first_frame>
            <second_frame>  R  H  E  L  Q  S  G  I  Y  S  P  Y  I  L  V  N  *  F  F  R  *  P  F  H  S  H  *  T  *  T  L  K  L  Y  N  L  N  L  I  F  V  K  Q  I  L  K  S  C  L  V  Q  S  S  S  N  I  L  *  L  S  L  A  L  L  L  I  I  A  S  L  V  D  L  S  L  T  *  Y  C  N  K  L  C  L  Y  F  D  L  A  R  L  V  Q  </second_frame>
            <third_frame>   G  M  N  C  R  V  V  Y  I  H  P  I  S  W  *  T  S  F  S  D  N  H  S  T  P  T  K  L  R  P  *  N  C  I  T  S  T  *  F  S  *  N  K  Y  *  R  V  V  *  F  S  R  A  R  I  Y  Y  S  L  V  *  L  Y  S  L  L  *  Q  V  W  L  I  S  A  *  H  S  I  V  I  N  S  V  S  I  S  I  W  L  G  L  F  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0111F22.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 56 chains have been computed
$ 
$ memory statistics:
$ 205344 bytes spliced alignments in total
$ 6 spliced alignments have been stored
$ 34224 bytes was the average size of a spliced alignment
$ 9536 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2384 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 56 backtrace matrices have been allocated
$ 
$ date finished: 2008-11-22 05:26:47
-->
