<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-17 23:34:11"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E241003" ref_strand="+" ref_description="SGN-E241003 [cLED-24-D24]">
      <seq>tcaatctatgcttctttgcattgtaatgctcaggaagagctgttgacgcgatgtaacggcaattggaagcgtcttttgaggttcttgatggctgtggaacagtcctctgatatggttgaaacttctgcaggcaatatgcaaataaggagtggcaggtatcacacactgctaatcaatgattcagcagcatactcttgtggttccagtttatgcggcgtccttggtcatgggcctgaaacaactcagtgtgtggaatttactcgaattagctttcctgttcccgtacaagttgcgcaagtttcagcttctcataatcatgctgcttttgtcacagggtctggacaggtgttcacatgtggagataactcatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="1606" stop="98"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1306" g_stop="1172" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1171" i_stop="635" i_length="537">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="634" g_stop="425" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="345" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E241003" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1306" e_stop="1172"/>
          <exon e_start="634" e_stop="425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAATGTACTATTTCTTTGGAAAACTTGTTATTCGTTTATCAATGTTTACTTTGTTTGGTTGATTGCTATTTTTAGGACTAATAATATATGGTCGAAATGTTACTTATCAAATAGATGGATGAAATGTTTTCAGACACTATTTTTGTTGTTGTCAGTCAGATAGGGCCAAAAATGACACTTCTCGACCCCTTTTCGGCTTCTTCGTGTATTTACCTTATTGTATTTTGAACTCCTTAGTGAAAATTTGGACTCTTCAACTGGATGGAGCGCGTGATTCCTCTGCTTCACATATAGCAGTAGGTACTAGGCTATCTTTTTTTGTTTGGTTAAGGAATTGTATGTAAGGTTTAGTGAATTATTTAGTATTGCAATGAAATGGGACCAAATAGAATGGAATGGATAACGGTTTTATGATCGAGGTTTAGTTGCTGATTGATTTCTACCTTAATATTTCTAGATTTTAGTTACTCGCTTCTACTAGAATAGTCTGCAGCTAGGACTTCATCTTTTGTTATTACTTACTGTAAAAAGTTCTTGGCAGATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAG</genome_strand>
        <mrna_strand>TCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E542728" ref_strand="+" ref_description="SGN-E542728 [TUS-64-C21]">
      <seq>attttcattcatagatccgatatttgctcaaatttgtgtttataaagttcctatctttgtggggttttggagttttttcttgtaatttggtagaaaaagagtttaattttgttttgtttgttcaagtttgtgttttggggttgttgtttcttgatgatttatttcgacttagattataagatttccccaccaagtccttcattttcttattcaatttcatcaaattttcttacatctgatattttcttgataaagtgtgttaattgtttccattttcgtataaaagattgtttttgtgaagggaaaatgggggatcgtttgaggtcaactttaatggaggatttgccagtacatttgattcttgaaatattgatgtgcggtcgattagctgttattgatttaataagtttagagctaacttcaaggacttttaggggaacacatggtttgtttcctaaaaagttcaagtctttggtagattatgctgcttttcagctttgtggattgagttcaatctatgcttctttgcattgtaatgctcaggaagagctgttgacgcgatgtaacggcaattggaagcgtcttttgaggttcttgatggctgtggaacagtcctctgatatggttgaaacttctgcaggcaatatgcaaataaggagtggcaggtatcacacactgctaatcaatgattcagcagcatactcttgtggttccagtttatgcggcgtccttggtcatgggcctgaaacaactcagtgtgtggaatttactcgaattagctttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="2116" stop="193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1816" g_stop="1172" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1171" i_stop="635" i_length="537">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="634" g_stop="493" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="787" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E542728" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1816" e_stop="1172"/>
          <exon e_start="634" e_stop="493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAATGTACTATTTCTTTGGAAAACTTGTTATTCGTTTATCAATGTTTACTTTGTTTGGTTGATTGCTATTTTTAGGACTAATAATATATGGTCGAAATGTTACTTATCAAATAGATGGATGAAATGTTTTCAGACACTATTTTTGTTGTTGTCAGTCAGATAGGGCCAAAAATGACACTTCTCGACCCCTTTTCGGCTTCTTCGTGTATTTACCTTATTGTATTTTGAACTCCTTAGTGAAAATTTGGACTCTTCAACTGGATGGAGCGCGTGATTCCTCTGCTTCACATATAGCAGTAGGTACTAGGCTATCTTTTTTTGTTTGGTTAAGGAATTGTATGTAAGGTTTAGTGAATTATTTAGTATTGCAATGAAATGGGACCAAATAGAATGGAATGGATAACGGTTTTATGATCGAGGTTTAGTTGCTGATTGATTTCTACCTTAATATTTCTAGATTTTAGTTACTCGCTTCTACTAGAATAGTCTGCAGCTAGGACTTCATCTTTTGTTATTACTTACTGTAAAAAGTTCTTGGCAGATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTG</genome_strand>
        <mrna_strand>ATTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E301706" ref_strand="+" ref_description="SGN-E301706 [cLEW-23-P24]">
      <seq>ttttcattcatagatccgatatttgctcaaatttgtgtttataaagttcctatctttgtggggttttggagttttttcttgtaatttggtagaaaaagagtttaattttgttttgtttgttcaagtttgtgttttggggttgttgtttcttgatgatttatttcgacttagattataagatttccccaccaagtccttcattttcttattcaatttcatcaaattttcttacatctgatattttcttgataaagtgtgttaattgtttccattttcgtataaaagattgtttttgtgaatggaaaatgggggatcgtttgaggtcaactttaatggaggatttgccagttcatttgattcttgaaatattgatgtgcggtcgattagctgttattgattttataagtttagagctaacttcaaagacttttaagggaacacatggtttggttcctaaaaagttcaagtctttggtagattatgctgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="2115" stop="1026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1815" g_stop="1326" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E301706" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1815" e_stop="1326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTT</genome_strand>
        <mrna_strand>TTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAATGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTTCATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTTATAAGTTTAGAGCTAACTTCAAAGACTTTTAAGGGAACACATGGTTTGGTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E263158" ref_strand="+" ref_description="SGN-E263158 [cLEG-62-C10]">
      <seq>caaggacccctcaactcaattttcattcatagatccgatatttgctcaaatttgtgtttataaagttcctatctttgtngggttttggagttttttcttgtaatttggtagaaaaagagtttaattttgttttgtttgttcaagtttgtgttttggggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="2134" stop="1375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1834" g_stop="1675" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E263158" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>160</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1834" e_stop="1675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGACCCCTCAACTCAATTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTT</genome_strand>
        <mrna_strand>CAAGGACCCCTCAACTCAATTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTNGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E721282" ref_strand="+" ref_description="SGN-E721282 [FC13BD01]">
      <seq>ggtggagtgtatactccaaaccggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagccattcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgctgatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagtgagctctacaaagtcatagactcttctgatgtcgttattcaggttcttgatgccagagacccctgtggtacaaggtgctaccatttggagaaacatttgaaagaaaattttgcagcacaacatatggtccttttgcttaataagtgtgatttggtccctgcttgggcaacaagggatggcttanagtgctctctagggaatatccaactttggcatttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10596" stop="13502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10895" g_stop="11220" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11221" i_stop="11564" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11565" g_stop="11698" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="460" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11699" i_stop="11963" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11964" g_stop="12093" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="590" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12094" i_stop="12209" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12210" g_stop="12367" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="748" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12368" i_stop="12863" i_length="496">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12864" g_stop="12965" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="850" r_length="102" r_score="0.941"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12966" i_stop="13125" i_length="160">
            <donor d_prob="0.927" d_score="0.88"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13126" g_stop="13202" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="851" r_stop="926" r_length="76" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E721282" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>927</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10895" e_stop="11220"/>
          <exon e_start="11565" e_stop="11698"/>
          <exon e_start="11964" e_stop="12093"/>
          <exon e_start="12210" e_stop="12367"/>
          <exon e_start="12864" e_stop="12965"/>
          <exon e_start="13126" e_stop="13202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGAGTGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAA-TTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCA</genome_strand>
        <mrna_strand>GGTGGAGTGTATACTCCAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCATTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTTTGCAGCAC-AACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAAC-AAGGGATGGCTTANAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E747304" ref_strand="+" ref_description="SGN-E747304 [GI|47104658]">
      <seq>tggagtgtgtactacaaaccggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgctgatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagtgagctctacaaagtcatagactcttctgatgtcgttattcaggttcttgatgccagagacccctgtggtacaaggtgctaccatttggagaaacatttgaaagaaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctgcttgggcaacaaagggatggcttagagtgctctctagggaatatccaactttggcatttcatgcaagtgtcaccaagtcctttggaaagggttctcttttgtcagtgctgagacagttttctcgtctaaagagcgataagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtttgcaaggtggctcctatcccaggagagactaaagtgtggcagtacattacactcacaaagaggatattcttgattgattgtcctggtgtagtttatcagaatcatgattccgaaacagatatagtcttgaagggcgtggtacgagtgacaaacctacctgatgcttctgaacacattagcgaagtgttgaatcgcgttaagaaggagcatcttaaaagagcttataagatagagaattgggttgacgagtatgactttcttcaacagctatgcaagtcttcaggcaaacttctgaagggaggtgaacctgactacaatactgctgccaagatggttctccatgattggcaaagaggcaacattcctttctttgttccacctccaaagcttgatgatgagccaaatgaacttgtcgcagaggcagacacagccgttgataacgatcaggccacagctgctctcaaagctattgctgacgtcgtttcatcacaacaactgaaggaagttcctgttcaggaggaactatttagtaaggctgagctgttgggtgaaaactaatatgggcggattatcctttagacttgcaacatccacagttctggaatcgagttttcgtatatcgtttttacaatcttttagttgggtccattgcattcccagagttttctagtcctagaagagattgatatactggtcgaaaatatagatacctcgtatttttgttttaacgtttatttcgaattgagtgttaatggaaatgattaatatcttttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10597" stop="16913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10897" g_stop="11220" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11221" i_stop="11564" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11565" g_stop="11698" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="458" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11699" i_stop="11963" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11964" g_stop="12093" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="588" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12094" i_stop="12209" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12210" g_stop="12367" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="746" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12368" i_stop="12863" i_length="496">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12864" g_stop="12965" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="747" r_stop="848" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12966" i_stop="13125" i_length="160">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13126" g_stop="13230" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="849" r_stop="953" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="13231" i_stop="13391" i_length="161">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="13392" g_stop="13520" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="954" r_stop="1082" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="13521" i_stop="14110" i_length="590">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14111" g_stop="14251" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1083" r_stop="1223" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14252" i_stop="15213" i_length="962">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15214" g_stop="15314" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1224" r_stop="1324" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15315" i_stop="15590" i_length="276">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15591" g_stop="15648" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1325" r_stop="1382" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="15649" i_stop="16136" i_length="488">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="16137" g_stop="16608" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1383" r_stop="1854" r_length="472" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1859" polyA_stop="1873"/>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E747304" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1854</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10897" e_stop="11220"/>
          <exon e_start="11565" e_stop="11698"/>
          <exon e_start="11964" e_stop="12093"/>
          <exon e_start="12210" e_stop="12367"/>
          <exon e_start="12864" e_stop="12965"/>
          <exon e_start="13126" e_stop="13230"/>
          <exon e_start="13392" e_stop="13520"/>
          <exon e_start="14111" e_stop="14251"/>
          <exon e_start="15214" e_stop="15314"/>
          <exon e_start="15591" e_stop="15648"/>
          <exon e_start="16137" e_stop="16608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTGGTATGTGTCTTCTACTTTGCTTTATCAGGCTTTTGCTTGTGCTTGTGACTTGTCAAAGTCAAGCTATATTTCTTGGTTTATTTTGATACCTACCGCTTTATTTAAAGGACTTTGGTATAAAAAGGACTTTTAAGGCATAGGTGGCCTGATTTTACCTAGATAATCTTGCTTGCAATATTTGTGGTCCTCTAGAGAAAAATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCTACTCGAGCTATTAAGGAGGGAGAGGAGTTTTGGGTTCCTGAACTTTAGTCCAAACTCCCTAAGAGTTGTGCTATTGTCCTGTTTCCTGTTGGATATGTAATACACCATGAACTGGAACGTACTAGTATCAATAAAGAAAGATTTATAATCTACATAGCCCTCGATTTATGTGTTATTTATCCATTGCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTAATCCTGGGGACCTTTATAAAAAAATTGAAAGATTTATCTTGTTGTATAGGATATCTTCCCTTTATTACAGATTCCTTTGCCTCGTCTCAGTTGATGAAATATCTTCTTGTCTATATCACTTTGCTGTAAGCATGAGGTTCTTTGACTGACTACCTCAAAACCTCAAAATTTGGGGTTCCATTTCCAGGTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCCCAAAATTCCATATCTAGAATCTCTGTTCTGCTTAAATGATATTTTGATATTCCAGGGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAGGTAAATTGAAAATTTATAACTTGATGATTATATTTTGTTATACTTTTCATTAGTCTCTCGGGTATGATCTGAAGTGTTTTGTGCTGTTTGTCAGCTCATATAGGACGATCACTTAAACCGGTTCCTTTTATGTTTTTTCATTAGTTCATGTAGGACAAAGTGAAGCTCACTAGACGAACACTTGGTAGTCAAAGTTAAAGTTATGTAGCAGTATTGTTGGACAAAAATAATTGAGAACTCAGTTGGCCTCTAATAAGTGTTAATTGTGAAGTAGCACTTTCAGGTTGAGAAATGATTTCCTAAATGATAGAAAAATTGTAATGTCAATTTTATATATATCTTTATTCTACAGGGATTTTCGATAAAATTTGCATATTTGGCTACAATTCTGCAATGTGCTTGACATCCTTGTACTACTTTTCTTTTAGTGCTTATGGCTGTCCAGAGAGTAGTATAGTTGGTATAAAATCTTAATTTGTGCTATTCAGGGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATC</genome_strand>
        <mrna_strand>TGGAGTGTGTACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG....................................................................................................................................................................................................................................................................................GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E300966" ref_strand="+" ref_description="SGN-E300966 [cLEW-8-N11]">
      <seq>tggagtgtgtactacaaaccggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10597" stop="12310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10897" g_stop="11220" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11221" i_stop="11564" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11565" g_stop="11698" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="458" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11699" i_stop="11963" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11964" g_stop="12010" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="505" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E300966" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10897" e_stop="11220"/>
          <exon e_start="11565" e_stop="11698"/>
          <exon e_start="11964" e_stop="12010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTT</genome_strand>
        <mrna_strand>TGGAGTGTGTACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E703973" ref_strand="+" ref_description="SGN-E703973 [FA23AA06]">
      <seq>cggtatactacaaaccggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagccattcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgctgatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagtgagctctacaaagtcataaactcttctgatgtcgttattcaagttcttgatgccagagacccctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10603" stop="13189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10901" g_stop="11220" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11221" i_stop="11564" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11565" g_stop="11698" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="454" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11699" i_stop="11963" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11964" g_stop="12093" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="584" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12094" i_stop="12209" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12210" g_stop="12367" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="742" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12368" i_stop="12863" i_length="496">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12864" g_stop="12889" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="768" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E703973" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10901" e_stop="11220"/>
          <exon e_start="11565" e_stop="11698"/>
          <exon e_start="11964" e_stop="12093"/>
          <exon e_start="12210" e_stop="12367"/>
          <exon e_start="12864" e_stop="12889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGG</genome_strand>
        <mrna_strand>CGGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCATTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAAACTCTTCTGATGTCGTTATTCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E269760" ref_strand="+" ref_description="SGN-E269760 [cLEM-17-H8]">
      <seq>acaaaccggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10610" stop="11989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10910" g_stop="11220" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11221" i_stop="11564" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11565" g_stop="11689" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="437" r_length="126" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E269760" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10910" e_stop="11220"/>
          <exon e_start="11565" e_stop="11689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTT-AAATGAT</genome_strand>
        <mrna_strand>ACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E332857" ref_strand="+" ref_description="SGN-E332857 [cTOD-19-A19]">
      <seq>caaaccggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatgggatgaaatgctgatggattcagagatcttgttaggcacacaatgtttgagnaaagacnaagtaaacgaatttggagtgagctctancaagtcatagactcttctgatgtcgttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10611" stop="12664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10911" g_stop="11220" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11221" i_stop="11564" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11565" g_stop="11698" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="444" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11699" i_stop="11963" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11964" g_stop="12093" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="574" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12094" i_stop="12209" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12210" g_stop="12364" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="729" r_length="155" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E332857" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10911" e_stop="11220"/>
          <exon e_start="11565" e_stop="11698"/>
          <exon e_start="11964" e_stop="12093"/>
          <exon e_start="12210" e_stop="12364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCAT-GGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATT</genome_strand>
        <mrna_strand>CAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGGATG-AAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGNAAAGACNAAGTAAACGAATTTGGAGTGAGCTCTANCAAGTCATAGACTCTTCTGATGTCGTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E205947" ref_strand="+" ref_description="SGN-E205947 [cLEC-20-K17]">
      <seq>aaaccggcctagacgactgaggtattaacgttaatcgccgggtcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttaatgaagaaggttgatgtgtctcatgatgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10612" stop="12397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10912" g_stop="11220" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11221" i_stop="11564" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11565" g_stop="11698" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="443" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11699" i_stop="11963" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11964" g_stop="12093" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="573" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12094" i_stop="12209" i_length="116">
            <donor d_prob="0.886" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12210" g_stop="12216" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="580" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E205947" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10912" e_stop="11220"/>
          <exon e_start="11565" e_stop="11698"/>
          <exon e_start="11964" e_stop="12093"/>
          <exon e_start="12210" e_stop="12216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTT</genome_strand>
        <mrna_strand>AAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGGGTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAATGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E249811" ref_strand="+" ref_description="SGN-E249811 [cLEF-57-J18]">
      <seq>aaccggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10613" stop="12346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10913" g_stop="11220" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11221" i_stop="11564" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11565" g_stop="11698" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="442" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11699" i_stop="11963" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11964" g_stop="12046" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="525" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E249811" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10913" e_stop="11220"/>
          <exon e_start="11565" e_stop="11698"/>
          <exon e_start="11964" e_stop="12046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTAT</genome_strand>
        <mrna_strand>AACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E301598" ref_strand="+" ref_description="SGN-E301598 [cLEW-23-L14]">
      <seq>accggctctagacgactgaggtattaacggggatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgctttttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10614" stop="12314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10914" g_stop="11220" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11221" i_stop="11564" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11565" g_stop="11698" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="442" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11699" i_stop="11963" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11964" g_stop="12014" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="494" r_length="52" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E301598" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10914" e_stop="11220"/>
          <exon e_start="11565" e_stop="11698"/>
          <exon e_start="11964" e_stop="12014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGGC-CTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGC-TTTTGGA</genome_strand>
        <mrna_strand>ACCGGCTCTAGACGACTGAGGTATTAACGGGGATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E320412" ref_strand="+" ref_description="SGN-E320412 [cTOB-22-O22]">
      <seq>ccggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgctgatggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10615" stop="12567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10915" g_stop="11220" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11221" i_stop="11564" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11565" g_stop="11698" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="440" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11699" i_stop="11963" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11964" g_stop="12093" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="570" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12094" i_stop="12209" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12210" g_stop="12267" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="628" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E320412" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10915" e_stop="11220"/>
          <exon e_start="11565" e_stop="11698"/>
          <exon e_start="11964" e_stop="12093"/>
          <exon e_start="12210" e_stop="12267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATT</genome_strand>
        <mrna_strand>CCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E247188" ref_strand="+" ref_description="SGN-E247188 [cLEF-46-P18]">
      <seq>cggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaaacaaagaggaaacgccccaaactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10616" stop="12345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10916" g_stop="11220" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11221" i_stop="11564" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11565" g_stop="11698" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="439" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11699" i_stop="11963" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11964" g_stop="12045" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="521" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E247188" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10916" e_stop="11220"/>
          <exon e_start="11565" e_stop="11698"/>
          <exon e_start="11964" e_stop="12045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTA</genome_strand>
        <mrna_strand>CGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E264501" ref_strand="+" ref_description="SGN-E264501 [cLEG-67-K1]">
      <seq>cggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtccctttttaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaacaaagaggaaacgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10616" stop="12337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10916" g_stop="11220" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11221" i_stop="11564" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11565" g_stop="11698" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="439" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11699" i_stop="11963" i_length="265">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11964" g_stop="12037" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="512" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E264501" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10916" e_stop="11220"/>
          <exon e_start="11565" e_stop="11698"/>
          <exon e_start="11964" e_stop="12037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCC</genome_strand>
        <mrna_strand>CGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTTAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACC-AAAACAAAGAGGAAACGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E263993" ref_strand="+" ref_description="SGN-E263993 [cLEG-64-N11]">
      <seq>cggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttngacccaaaaccaagaggaaacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10616" stop="12335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10916" g_stop="11220" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11221" i_stop="11564" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11565" g_stop="11698" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="439" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11699" i_stop="11963" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11964" g_stop="12035" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="511" r_length="72" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E263993" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10916" e_stop="11220"/>
          <exon e_start="11565" e_stop="11698"/>
          <exon e_start="11964" e_stop="12035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGC</genome_strand>
        <mrna_strand>CGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTNGACCCAAAACCAAGAGGAAACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E286374" ref_strand="+" ref_description="SGN-E286374 [cLES-11-H9]">
      <seq>cggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaatacccagccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10616" stop="11430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10916" g_stop="11130" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E286374" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>215</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10916" e_stop="11130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGA</genome_strand>
        <mrna_strand>CGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCCAGCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E702113" ref_strand="+" ref_description="SGN-E702113 [FA17DD04]">
      <seq>gggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagccattcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgctgatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagtgagctctacaaagtcatagactcttctgatgtcgttattcaggttcttgatgccagagacccctgtggtacaaggtgctaccatttggagaaacatttgaaagaaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctgcttgggcaacaaagggatggcttagagtgctctctaggggaatatccaactttggcatttcatgcaagtgtcaccaagtcctttggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10724" stop="13529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11024" g_stop="11220" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11221" i_stop="11564" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11565" g_stop="11698" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="331" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11699" i_stop="11963" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11964" g_stop="12093" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="461" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12094" i_stop="12209" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12210" g_stop="12367" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="619" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12368" i_stop="12863" i_length="496">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12864" g_stop="12965" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="721" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12966" i_stop="13125" i_length="160">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13126" g_stop="13229" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="826" r_length="105" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E702113" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11024" e_stop="11220"/>
          <exon e_start="11565" e_stop="11698"/>
          <exon e_start="11964" e_stop="12093"/>
          <exon e_start="12210" e_stop="12367"/>
          <exon e_start="12864" e_stop="12965"/>
          <exon e_start="13126" e_stop="13229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTA-GGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAA</genome_strand>
        <mrna_strand>GGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCATTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E313744" ref_strand="+" ref_description="SGN-E313744 [cTOA-17-O14]">
      <seq>tccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgctgatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10749" stop="12611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11049" g_stop="11220" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11221" i_stop="11564" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11565" g_stop="11698" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="306" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11699" i_stop="11963" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11964" g_stop="12093" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="436" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12094" i_stop="12209" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12210" g_stop="12311" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="538" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E313744" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11049" e_stop="11220"/>
          <exon e_start="11565" e_stop="11698"/>
          <exon e_start="11964" e_stop="12093"/>
          <exon e_start="12210" e_stop="12311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTA</genome_strand>
        <mrna_strand>TCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E267916" ref_strand="+" ref_description="SGN-E267916 [cLEI-12-D22]">
      <seq>tacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtgggcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcgagttaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattgtgaagacaaacatggtgctagcacctccatggatgaaaatgctgatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagtgagctctacaaagtcatagactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10815" stop="12648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11115" g_stop="11220" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11221" i_stop="11564" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11565" g_stop="11698" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="240" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11699" i_stop="11963" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11964" g_stop="12093" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="370" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12094" i_stop="12209" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12210" g_stop="12348" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="509" r_length="139" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E267916" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11115" e_stop="11220"/>
          <exon e_start="11565" e_stop="11698"/>
          <exon e_start="11964" e_stop="12093"/>
          <exon e_start="12210" e_stop="12348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTC</genome_strand>
        <mrna_strand>TACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGGCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CGAGTTAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTGTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E206404" ref_strand="+" ref_description="SGN-E206404 [cLEC-23-N16]">
      <seq>ttaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgctgatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagtgagctctacaaagtcatagactcttctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10855" stop="12656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11155" g_stop="11220" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11221" i_stop="11564" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11565" g_stop="11698" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="200" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11699" i_stop="11963" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11964" g_stop="12093" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="330" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12094" i_stop="12209" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12210" g_stop="12356" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="477" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E206404" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11155" e_stop="11220"/>
          <exon e_start="11565" e_stop="11698"/>
          <exon e_start="11964" e_stop="12093"/>
          <exon e_start="12210" e_stop="12356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATG</genome_strand>
        <mrna_strand>TTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E249079" ref_strand="+" ref_description="SGN-E249079 [cLEF-49-F23]">
      <seq>ttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgctgatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagtgagctctacaaagtcatagactcttctgatgtcgttattcaggttcttgatgccagagacccctgtggtacaaggtgctaccatttggagaaacatttgaaagaaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctgcttgggcaacaaagggatggcttagagtgctctctaaggaatatccaactttggcatttcatgcaagtgtcaccaagtcctttggaaagggttctcttttgtcagtgctgagacagttttctcgtctaaagagcgataagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="11895" stop="13822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12079" g_stop="12093" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12094" i_stop="12209" i_length="116">
            <donor d_prob="0.886" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12210" g_stop="12367" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="173" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12368" i_stop="12863" i_length="496">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12864" g_stop="12965" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="275" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12966" i_stop="13125" i_length="160">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13126" g_stop="13230" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="380" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13231" i_stop="13391" i_length="161">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13392" g_stop="13520" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="509" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E249079" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12079" e_stop="12093"/>
          <exon e_start="12210" e_stop="12367"/>
          <exon e_start="12864" e_stop="12965"/>
          <exon e_start="13126" e_stop="13230"/>
          <exon e_start="13392" e_stop="13520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT</genome_strand>
        <mrna_strand>TTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAAGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E245726" ref_strand="+" ref_description="SGN-E245726 [cLEF-48-I8]">
      <seq>caaacatggtgctagcacctccatggatgaaaatgctgatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagtgagctctacaaagtcatagactcttctgatgtcgttattcaggttcttgatgccagagacccctgtggtacaaggtgctaccatttggagaaacatttgaaagaaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctgcttgggcaacaaagggatggcttagagtgctctctagggaatatccaactttggcatttcatgcaagtgtcaccaagtcctttggaaagggttctcttttgtcagtgctgagacagttttctcgtctaaagagcgataagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtttgcaaggtggctcctatcccaggagagactaaagtgtggcagtacattacactcacaaagaggatattcttgattgattgtcctggtgtagtttatcagaatcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="11923" stop="14520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12223" g_stop="12367" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12368" i_stop="12863" i_length="496">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12864" g_stop="12965" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="247" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12966" i_stop="13125" i_length="160">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13126" g_stop="13230" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="352" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13231" i_stop="13391" i_length="161">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13392" g_stop="13520" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="481" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13521" i_stop="14110" i_length="590">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14111" g_stop="14220" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="591" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E245726" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12223" e_stop="12367"/>
          <exon e_start="12864" e_stop="12965"/>
          <exon e_start="13126" e_stop="13230"/>
          <exon e_start="13392" e_stop="13520"/>
          <exon e_start="14111" e_stop="14220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGA</genome_strand>
        <mrna_strand>CAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E238176" ref_strand="+" ref_description="SGN-E238176 [cLED-22-G3]">
      <seq>gattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagtgagctctacaaagtcatagactcttctgatgtcgttattcaggttcttgatgccagagacccctgtggtacaaggtgctaccatttggagaaacatttgaaagaaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctgcttgggcaacaaagggatggcttagagtgctctctagggaatatccaactttggcatttcatgcaagtgtcaccaagtcctttggaaagggttctcttttgtcagtgctgagacagttttctcgtctaaagagcgataagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtttgcaaggtggctcctatcccaggagagactaaagtgtggcagtacattacactcacaaagaggatattcttgattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="11964" stop="14490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12264" g_stop="12367" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12368" i_stop="12863" i_length="496">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12864" g_stop="12965" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="206" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12966" i_stop="13125" i_length="160">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13126" g_stop="13230" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="311" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13231" i_stop="13391" i_length="161">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13392" g_stop="13520" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="440" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13521" i_stop="14110" i_length="590">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14111" g_stop="14190" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="520" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E238176" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12264" e_stop="12367"/>
          <exon e_start="12864" e_stop="12965"/>
          <exon e_start="13126" e_stop="13230"/>
          <exon e_start="13392" e_stop="13520"/>
          <exon e_start="14111" e_stop="14190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGA</genome_strand>
        <mrna_strand>GATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E700357" ref_strand="+" ref_description="SGN-E700357 [FA12DF01]">
      <seq>gctttgcttaataagtgtgatttggtccctgcttgggcaacaaagggatggcttagagtgctctctagggaatatccaactttggcatttcatgcaagtgtcaccaagtcctttggaaagggttctcttttgtcagtgctgagacagttttctcgtctaaagagcgataagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtttgcaaggtggctcctatcccaggagagactaaagtgtggcagtacattacactcacaaagaggatattcttgattgattgtcctggtgtagtttatcagaatcatgattccgaaacagatatagtcttgaagggcgtggtacgagtgacaaacctacctgatgcttctgaacacattagcgaagtgttgaatcgcgttaagaaggagcatcttaaaagagcttataagatagagaattgggttgacgagtatgactttcttcaacagctatgcaagtcttcaggcaaacttctgaagggaggtgaacctgactacaatactgctgccaagatggttctccatgattggcaaagaggcaacattcctttctttgttccacctccaaagcttgatgatgagccnaatgaacttgtcgctgaggcagacacagccgttgataacgatcaggccacagctgctctcaaagctattgctgacgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="12824" stop="16620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12951" g_stop="12965" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12966" i_stop="13125" i_length="160">
            <donor d_prob="0.927" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13126" g_stop="13230" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="120" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13231" i_stop="13391" i_length="161">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13392" g_stop="13520" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="249" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13521" i_stop="14110" i_length="590">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14111" g_stop="14251" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="390" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14252" i_stop="15213" i_length="962">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15214" g_stop="15314" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="491" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15315" i_stop="15590" i_length="276">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15591" g_stop="15648" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="549" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15649" i_stop="16136" i_length="488">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16137" g_stop="16320" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="733" r_length="184" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E700357" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12951" e_stop="12965"/>
          <exon e_start="13126" e_stop="13230"/>
          <exon e_start="13392" e_stop="13520"/>
          <exon e_start="14111" e_stop="14251"/>
          <exon e_start="15214" e_stop="15314"/>
          <exon e_start="15591" e_stop="15648"/>
          <exon e_start="16137" e_stop="16320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTGGTATGTGTCTTCTACTTTGCTTTATCAGGCTTTTGCTTGTGCTTGTGACTTGTCAAAGTCAAGCTATATTTCTTGGTTTATTTTGATACCTACCGCTTTATTTAAAGGACTTTGGTATAAAAAGGACTTTTAAGGCATAGGTGGCCTGATTTTACCTAGATAATCTTGCTTGCAATATTTGTGGTCCTCTAGAGAAAAATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCTACTCGAGCTATTAAGGAGGGAGAGGAGTTTTGGGTTCCTGAACTTTAGTCCAAACTCCCTAAGAGTTGTGCTATTGTCCTGTTTCCTGTTGGATATGTAATACACCATGAACTGGAACGTACTAGTATCAATAAAGAAAGATTTATAATCTACATAGCCCTCGATTTATGTGTTATTTATCCATTGCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTAATCCTGGGGACCTTTATAAAAAAATTGAAAGATTTATCTTGTTGTATAGGATATCTTCCCTTTATTACAGATTCCTTTGCCTCGTCTCAGTTGATGAAATATCTTCTTGTCTATATCACTTTGCTGTAAGCATGAGGTTCTTTGACTGACTACCTCAAAACCTCAAAATTTGGGGTTCCATTTCCAGGTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCCCAAAATTCCATATCTAGAATCTCTGTTCTGCTTAAATGATATTTTGATATTCCAGGGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAGGTAAATTGAAAATTTATAACTTGATGATTATATTTTGTTATACTTTTCATTAGTCTCTCGGGTATGATCTGAAGTGTTTTGTGCTGTTTGTCAGCTCATATAGGACGATCACTTAAACCGGTTCCTTTTATGTTTTTTCATTAGTTCATGTAGGACAAAGTGAAGCTCACTAGACGAACACTTGGTAGTCAAAGTTAAAGTTATGTAGCAGTATTGTTGGACAAAAATAATTGAGAACTCAGTTGGCCTCTAATAAGTGTTAATTGTGAAGTAGCACTTTCAGGTTGAGAAATGATTTCCTAAATGATAGAAAAATTGTAATGTCAATTTTATATATATCTTTATTCTACAGGGATTTTCGATAAAATTTGCATATTTGGCTACAATTCTGCAATGTGCTTGACATCCTTGTACTACTTTTCTTTTAGTGCTTATGGCTGTCCAGAGAGTAGTATAGTTGGTATAAAATCTTAATTTGTGCTATTCAGGGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCG</genome_strand>
        <mrna_strand>GCTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG....................................................................................................................................................................................................................................................................................GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCNAATGAACTTGTCGCTGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E295559" ref_strand="+" ref_description="SGN-E295559 [cLET-23-N21]">
      <seq>caactttggcatttcatgcaagtgtcaccaagtcctttggaaagggttctcttttgtcagtgctgagacagttttctcgtctaaagagcgataagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtttgcaaggtggctcctatcccaggagagactaaagtgtggcagtacattacactcacaaagaggatattcttgattgattgtcctggtgtagtttatcagaatcatgattccgaaacagatatagtcttgaagggcgtggtacgagtgacaaacctacctgatgcttctgaacacattagcgaagtgttgaatcgcgttaagaaggagcatcttaaaagagcttataagatagagaattgggttgacgagtatgactttcttcaacagctatgcaagtcttcaggcaaacttctgaagggaggtgaacctgactacaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="12887" stop="16460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13187" g_stop="13230" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13231" i_stop="13391" i_length="161">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13392" g_stop="13520" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="173" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13521" i_stop="14110" i_length="590">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14111" g_stop="14251" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="314" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14252" i_stop="15213" i_length="962">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15214" g_stop="15314" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="415" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15315" i_stop="15590" i_length="276">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15591" g_stop="15648" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="473" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15649" i_stop="16136" i_length="488">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16137" g_stop="16160" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="497" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E295559" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13187" e_stop="13230"/>
          <exon e_start="13392" e_stop="13520"/>
          <exon e_start="14111" e_stop="14251"/>
          <exon e_start="15214" e_stop="15314"/>
          <exon e_start="15591" e_stop="15648"/>
          <exon e_start="16137" e_stop="16160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTGGTATGTGTCTTCTACTTTGCTTTATCAGGCTTTTGCTTGTGCTTGTGACTTGTCAAAGTCAAGCTATATTTCTTGGTTTATTTTGATACCTACCGCTTTATTTAAAGGACTTTGGTATAAAAAGGACTTTTAAGGCATAGGTGGCCTGATTTTACCTAGATAATCTTGCTTGCAATATTTGTGGTCCTCTAGAGAAAAATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCTACTCGAGCTATTAAGGAGGGAGAGGAGTTTTGGGTTCCTGAACTTTAGTCCAAACTCCCTAAGAGTTGTGCTATTGTCCTGTTTCCTGTTGGATATGTAATACACCATGAACTGGAACGTACTAGTATCAATAAAGAAAGATTTATAATCTACATAGCCCTCGATTTATGTGTTATTTATCCATTGCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTAATCCTGGGGACCTTTATAAAAAAATTGAAAGATTTATCTTGTTGTATAGGATATCTTCCCTTTATTACAGATTCCTTTGCCTCGTCTCAGTTGATGAAATATCTTCTTGTCTATATCACTTTGCTGTAAGCATGAGGTTCTTTGACTGACTACCTCAAAACCTCAAAATTTGGGGTTCCATTTCCAGGTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCCCAAAATTCCATATCTAGAATCTCTGTTCTGCTTAAATGATATTTTGATATTCCAGGGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAGGTAAATTGAAAATTTATAACTTGATGATTATATTTTGTTATACTTTTCATTAGTCTCTCGGGTATGATCTGAAGTGTTTTGTGCTGTTTGTCAGCTCATATAGGACGATCACTTAAACCGGTTCCTTTTATGTTTTTTCATTAGTTCATGTAGGACAAAGTGAAGCTCACTAGACGAACACTTGGTAGTCAAAGTTAAAGTTATGTAGCAGTATTGTTGGACAAAAATAATTGAGAACTCAGTTGGCCTCTAATAAGTGTTAATTGTGAAGTAGCACTTTCAGGTTGAGAAATGATTTCCTAAATGATAGAAAAATTGTAATGTCAATTTTATATATATCTTTATTCTACAGGGATTTTCGATAAAATTTGCATATTTGGCTACAATTCTGCAATGTGCTTGACATCCTTGTACTACTTTTCTTTTAGTGCTTATGGCTGTCCAGAGAGTAGTATAGTTGGTATAAAATCTTAATTTGTGCTATTCAGGGAGGTGAACCTGACTACAATACT</genome_strand>
        <mrna_strand>CAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG....................................................................................................................................................................................................................................................................................GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTGAACCTGACTACAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E266964" ref_strand="+" ref_description="SGN-E266964 [cLEI-7-N11]">
      <seq>aagtcctttggaaagggttctcttttgtcagtgctgagacagttttctcgtctaaagagcgataagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtttgcaaggtggctcctatcccaggagagactaaagtgtggcagtacattacactcacaaagaggatattcttgattgattgtcctggtgtagtttatcagaatcatgattccgaaacagatatagtcttgaagggcgtggtacgagtgacaaacctacctgatgcttctgaacacattaacgaagtgttgaatcgcgttaagaaggagcatcttaaaagagcttataagatagagaattgggttgacgagtatgactttcttcaacagctatgcaagtcttcacgcaaacttctgaagggaggtgaacctgactacaatactgctgccaagatggttctccatgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="13090" stop="16486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13216" g_stop="13230" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13231" i_stop="13391" i_length="161">
            <donor d_prob="0.903" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13392" g_stop="13520" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="144" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13521" i_stop="14110" i_length="590">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14111" g_stop="14251" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="285" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14252" i_stop="15213" i_length="962">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15214" g_stop="15314" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="386" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15315" i_stop="15590" i_length="276">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15591" g_stop="15648" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="444" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15649" i_stop="16136" i_length="488">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16137" g_stop="16186" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="494" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E266964" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13216" e_stop="13230"/>
          <exon e_start="13392" e_stop="13520"/>
          <exon e_start="14111" e_stop="14251"/>
          <exon e_start="15214" e_stop="15314"/>
          <exon e_start="15591" e_stop="15648"/>
          <exon e_start="16137" e_stop="16186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTGGTATGTGTCTTCTACTTTGCTTTATCAGGCTTTTGCTTGTGCTTGTGACTTGTCAAAGTCAAGCTATATTTCTTGGTTTATTTTGATACCTACCGCTTTATTTAAAGGACTTTGGTATAAAAAGGACTTTTAAGGCATAGGTGGCCTGATTTTACCTAGATAATCTTGCTTGCAATATTTGTGGTCCTCTAGAGAAAAATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCTACTCGAGCTATTAAGGAGGGAGAGGAGTTTTGGGTTCCTGAACTTTAGTCCAAACTCCCTAAGAGTTGTGCTATTGTCCTGTTTCCTGTTGGATATGTAATACACCATGAACTGGAACGTACTAGTATCAATAAAGAAAGATTTATAATCTACATAGCCCTCGATTTATGTGTTATTTATCCATTGCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTAATCCTGGGGACCTTTATAAAAAAATTGAAAGATTTATCTTGTTGTATAGGATATCTTCCCTTTATTACAGATTCCTTTGCCTCGTCTCAGTTGATGAAATATCTTCTTGTCTATATCACTTTGCTGTAAGCATGAGGTTCTTTGACTGACTACCTCAAAACCTCAAAATTTGGGGTTCCATTTCCAGGTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCCCAAAATTCCATATCTAGAATCTCTGTTCTGCTTAAATGATATTTTGATATTCCAGGGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAGGTAAATTGAAAATTTATAACTTGATGATTATATTTTGTTATACTTTTCATTAGTCTCTCGGGTATGATCTGAAGTGTTTTGTGCTGTTTGTCAGCTCATATAGGACGATCACTTAAACCGGTTCCTTTTATGTTTTTTCATTAGTTCATGTAGGACAAAGTGAAGCTCACTAGACGAACACTTGGTAGTCAAAGTTAAAGTTATGTAGCAGTATTGTTGGACAAAAATAATTGAGAACTCAGTTGGCCTCTAATAAGTGTTAATTGTGAAGTAGCACTTTCAGGTTGAGAAATGATTTCCTAAATGATAGAAAAATTGTAATGTCAATTTTATATATATCTTTATTCTACAGGGATTTTCGATAAAATTTGCATATTTGGCTACAATTCTGCAATGTGCTTGACATCCTTGTACTACTTTTCTTTTAGTGCTTATGGCTGTCCAGAGAGTAGTATAGTTGGTATAAAATCTTAATTTGTGCTATTCAGGGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTG</genome_strand>
        <mrna_strand>AAGTCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAACGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG....................................................................................................................................................................................................................................................................................GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCACGCAAACTTCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E254505" ref_strand="+" ref_description="SGN-E254505 [cLEG-29-O15]">
      <seq>gttctcttttgtcagtgctgagacagttttctcgtgctaaagagcgataagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaataccattgcgcacaaagaatgtttgcaaggtggctcctatcccaggagagactaaagtgtggcagtacattacactcaccaaagaggatattcttgattgattgtcctggtgtagtttatcagaatcatgattccgaaacagatatagtcttgaagggcgtggtacgagtgacaaacctacctgatgcttctgaacacattagcgaagtgttgaatcgcgttaagaaggagcatcttaaaagagcttataagatagagaattgggttgacgagtatgactttcttcaacagctatgcaagtcttcaggcaaacttctgaagggaggtgaacctgactacaatactgctgccaagatggttctccatgattggcaaagaggcaacattcctttctttgttccacctccaaagcttgatgatgagccaaatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="13093" stop="16548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13393" g_stop="13520" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13521" i_stop="14110" i_length="590">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14111" g_stop="14251" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="272" r_length="142" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14252" i_stop="15213" i_length="962">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15214" g_stop="15314" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="373" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15315" i_stop="15590" i_length="276">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15591" g_stop="15648" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="431" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15649" i_stop="16136" i_length="488">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16137" g_stop="16248" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="543" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E254505" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13393" e_stop="13520"/>
          <exon e_start="14111" e_stop="14251"/>
          <exon e_start="15214" e_stop="15314"/>
          <exon e_start="15591" e_stop="15648"/>
          <exon e_start="16137" e_stop="16248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGT-CTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATA-CATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCA-CAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTGGTATGTGTCTTCTACTTTGCTTTATCAGGCTTTTGCTTGTGCTTGTGACTTGTCAAAGTCAAGCTATATTTCTTGGTTTATTTTGATACCTACCGCTTTATTTAAAGGACTTTGGTATAAAAAGGACTTTTAAGGCATAGGTGGCCTGATTTTACCTAGATAATCTTGCTTGCAATATTTGTGGTCCTCTAGAGAAAAATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCTACTCGAGCTATTAAGGAGGGAGAGGAGTTTTGGGTTCCTGAACTTTAGTCCAAACTCCCTAAGAGTTGTGCTATTGTCCTGTTTCCTGTTGGATATGTAATACACCATGAACTGGAACGTACTAGTATCAATAAAGAAAGATTTATAATCTACATAGCCCTCGATTTATGTGTTATTTATCCATTGCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTAATCCTGGGGACCTTTATAAAAAAATTGAAAGATTTATCTTGTTGTATAGGATATCTTCCCTTTATTACAGATTCCTTTGCCTCGTCTCAGTTGATGAAATATCTTCTTGTCTATATCACTTTGCTGTAAGCATGAGGTTCTTTGACTGACTACCTCAAAACCTCAAAATTTGGGGTTCCATTTCCAGGTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCCCAAAATTCCATATCTAGAATCTCTGTTCTGCTTAAATGATATTTTGATATTCCAGGGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAGGTAAATTGAAAATTTATAACTTGATGATTATATTTTGTTATACTTTTCATTAGTCTCTCGGGTATGATCTGAAGTGTTTTGTGCTGTTTGTCAGCTCATATAGGACGATCACTTAAACCGGTTCCTTTTATGTTTTTTCATTAGTTCATGTAGGACAAAGTGAAGCTCACTAGACGAACACTTGGTAGTCAAAGTTAAAGTTATGTAGCAGTATTGTTGGACAAAAATAATTGAGAACTCAGTTGGCCTCTAATAAGTGTTAATTGTGAAGTAGCACTTTCAGGTTGAGAAATGATTTCCTAAATGATAGAAAAATTGTAATGTCAATTTTATATATATCTTTATTCTACAGGGATTTTCGATAAAATTTGCATATTTGGCTACAATTCTGCAATGTGCTTGACATCCTTGTACTACTTTTCTTTTAGTGCTTATGGCTGTCCAGAGAGTAGTATAGTTGGTATAAAATCTTAATTTGTGCTATTCAGGGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAAC</genome_strand>
        <mrna_strand>GTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTGCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACCATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACCAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG....................................................................................................................................................................................................................................................................................GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E262241" ref_strand="-" ref_description="SGN-E262241 [cLEG-56-A8]">
      <seq>gaggatattcttgattgattgtcctggtgtagtttatcagaatcatgattccgaaacagatatagtcttgaagggcgtggtacgagtgacaaacctaccntgatgcttctgaacacattagcgaagtgttgaatcgcgttaagaaggagcatcttaaaagagcttataagatagagaattgggttgacgagtatgactttcttcaacagctatgcaagtcttcaggcaaacttctgaagggaggtgaacctgactacaatactgctgccaagatggttctccatgattggcaaagaggcaacattcctttctttgttccacctccaaagcttgatgatgagccaaatgaacttgtcgcagaggcagacacagccgttgataacgatcaggccacagctgctctcaaagctattgctgacgtcgtttcatcacaacaactgaaggaagttcctgttcaggaggaactatttagtaaggctgagctgttgggtgaaaactaatatgggcggattatcctttagacttgcaacatccacagttctggaatcgagttttcgtatatcgtttttacaatcttttagttgggtccattgcattcccagagttttctagtcctagaagagattgatatactggtcgaaaatatagatacctcgtatttttgttttaacgtttatttcgaattgagtgttaatggaaatgattaatatcatctagctcaacttgtttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="13873" stop="16930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14173" g_stop="14251" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14252" i_stop="15213" i_length="962">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15214" g_stop="15314" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="181" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15315" i_stop="15590" i_length="276">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15591" g_stop="15648" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="239" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15649" i_stop="16136" i_length="488">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16137" g_stop="16629" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="732" r_length="493" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="733" polyA_stop="748"/>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E262241" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262241" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14173" e_stop="14251"/>
          <exon e_start="15214" e_stop="15314"/>
          <exon e_start="15591" e_stop="15648"/>
          <exon e_start="16137" e_stop="16629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTGGTATGTGTCTTCTACTTTGCTTTATCAGGCTTTTGCTTGTGCTTGTGACTTGTCAAAGTCAAGCTATATTTCTTGGTTTATTTTGATACCTACCGCTTTATTTAAAGGACTTTGGTATAAAAAGGACTTTTAAGGCATAGGTGGCCTGATTTTACCTAGATAATCTTGCTTGCAATATTTGTGGTCCTCTAGAGAAAAATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCTACTCGAGCTATTAAGGAGGGAGAGGAGTTTTGGGTTCCTGAACTTTAGTCCAAACTCCCTAAGAGTTGTGCTATTGTCCTGTTTCCTGTTGGATATGTAATACACCATGAACTGGAACGTACTAGTATCAATAAAGAAAGATTTATAATCTACATAGCCCTCGATTTATGTGTTATTTATCCATTGCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTAATCCTGGGGACCTTTATAAAAAAATTGAAAGATTTATCTTGTTGTATAGGATATCTTCCCTTTATTACAGATTCCTTTGCCTCGTCTCAGTTGATGAAATATCTTCTTGTCTATATCACTTTGCTGTAAGCATGAGGTTCTTTGACTGACTACCTCAAAACCTCAAAATTTGGGGTTCCATTTCCAGGTACGAGTGACAAACCTACC-TGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCCCAAAATTCCATATCTAGAATCTCTGTTCTGCTTAAATGATATTTTGATATTCCAGGGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAGGTAAATTGAAAATTTATAACTTGATGATTATATTTTGTTATACTTTTCATTAGTCTCTCGGGTATGATCTGAAGTGTTTTGTGCTGTTTGTCAGCTCATATAGGACGATCACTTAAACCGGTTCCTTTTATGTTTTTTCATTAGTTCATGTAGGACAAAGTGAAGCTCACTAGACGAACACTTGGTAGTCAAAGTTAAAGTTATGTAGCAGTATTGTTGGACAAAAATAATTGAGAACTCAGTTGGCCTCTAATAAGTGTTAATTGTGAAGTAGCACTTTCAGGTTGAGAAATGATTTCCTAAATGATAGAAAAATTGTAATGTCAATTTTATATATATCTTTATTCTACAGGGATTTTCGATAAAATTTGCATATTTGGCTACAATTCTGCAATGTGCTTGACATCCTTGTACTACTTTTCTTTTAGTGCTTATGGCTGTCCAGAGAGTAGTATAGTTGGTATAAAATCTTAATTTGTGCTATTCAGGGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAG</genome_strand>
        <mrna_strand>GAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGACAAACCTACCNTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG....................................................................................................................................................................................................................................................................................GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E292323" ref_strand="+" ref_description="SGN-E292323 [cLET-1-O17]">
      <seq>ggacctctttcagagcaatatcatcgaagttccaaagtagggaagaccagcatccacacaacagcatcattgcaattgatttgtttccaatcttcccctatccaaatgtattcatgactaaatgcttccgacatcataactatatgagatcatcctatgtatgccagtcatagaagcgctgtcctagtagctagcctaaattaacattggcgaccaaaatttcattttaaaaaaatgccaacaataagaacttctaggaaaacaaaattgaagtacttataaaaagtgaacacaagaggatatttgatctcaaatcaccataagaacacatctctggaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="15089" stop="14149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14789" g_stop="14449" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E292323" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14789" e_stop="14449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCTCTTTCAGAGCAATATCATCGAAGTTCCAAAGTAGGGAAGACCAGCATCCACACAACAGCATCATTGCAATTGATTTGTTTCCAATCTTCCCCTATCCAAATGTATTCATGACTAAATGCTTCCGACATCATAACTATATGAGATCATCCTATGTATGCCAGTCATAGAAGCGCTGTCCTAGTAGCTAGCCTAAATTAACATTGGCGACCAAAATTTCATTTTAAAAAAATGCCAACAATAAGAACTTCTAGGAAAACAAAATTGAAGTACTTATAAAAAGTGAACACAAGAGGATATTTGATCTCAAATCACCATAAGAACACATCTCTGGAATT</genome_strand>
        <mrna_strand>GGACCTCTTTCAGAGCAATATCATCGAAGTTCCAAAGTAGGGAAGACCAGCATCCACACAACAGCATCATTGCAATTGATTTGTTTCCAATCTTCCCCTATCCAAATGTATTCATGACTAAATGCTTCCGACATCATAACTATATGAGATCATCCTATGTATGCCAGTCATAGAAGCGCTGTCCTAGTAGCTAGCCTAAATTAACATTGGCGACCAAAATTTCATTTTAAAAAAATGCCAACAATAAGAACTTCTAGGAAAACAAAATTGAAGTACTTATAAAAAGTGAACACAAGAGGATATTTGATCTCAAATCACCATAAGAACACATCTCTGGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E372887" ref_strand="+" ref_description="SGN-E372887 [TUS-32-B23]">
      <seq>ggacctctttcagagcaatatcatcgaagttccaaagtagggaagaccagcatccacacaacagcatcattgcaattgatttgtttccaatcttcccctatccaaatgtattcatgactaaatgcttccgacatcataactatatgagatcatcctatgtatgccagtcatagaagcgctgtcctagtagctagcctaaattaacattggcgaccaaaatttcattttaaaaaaatgccaacaataagaacttctaggaaaacaaaattgaagtacttataaaaagtgaacacaagaggatatttgatctcaaatcaccataagaacacatctctggaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="15089" stop="14149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14789" g_stop="14449" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E372887" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14789" e_stop="14449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCTCTTTCAGAGCAATATCATCGAAGTTCCAAAGTAGGGAAGACCAGCATCCACACAACAGCATCATTGCAATTGATTTGTTTCCAATCTTCCCCTATCCAAATGTATTCATGACTAAATGCTTCCGACATCATAACTATATGAGATCATCCTATGTATGCCAGTCATAGAAGCGCTGTCCTAGTAGCTAGCCTAAATTAACATTGGCGACCAAAATTTCATTTTAAAAAAATGCCAACAATAAGAACTTCTAGGAAAACAAAATTGAAGTACTTATAAAAAGTGAACACAAGAGGATATTTGATCTCAAATCACCATAAGAACACATCTCTGGAATT</genome_strand>
        <mrna_strand>GGACCTCTTTCAGAGCAATATCATCGAAGTTCCAAAGTAGGGAAGACCAGCATCCACACAACAGCATCATTGCAATTGATTTGTTTCCAATCTTCCCCTATCCAAATGTATTCATGACTAAATGCTTCCGACATCATAACTATATGAGATCATCCTATGTATGCCAGTCATAGAAGCGCTGTCCTAGTAGCTAGCCTAAATTAACATTGGCGACCAAAATTTCATTTTAAAAAAATGCCAACAATAAGAACTTCTAGGAAAACAAAATTGAAGTACTTATAAAAAGTGAACACAAGAGGATATTTGATCTCAAATCACCATAAGAACACATCTCTGGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E292146" ref_strand="+" ref_description="SGN-E292146 [cLET-1-O17]">
      <seq>attccagagatgtgttcttatggtgatttgagatcaaatatcctcttgtgttcactttttataagtacttcaattttgttttcctagaagttcttattgttggcatttttttaaaatgaaattttggtcgccaatgttaatttaggctagctactaggacagcgcttctatgactggcatacataggatgatctcatatagttatgatgtcggaagcatttagtcatgaatacatttggataggggaagattggaaacaaatcaattgcaatgatgctgttgtgtggatgctggtcttccctactttggaacttcgatgatattgctctgaaagaggtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="14150" stop="15090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14450" g_stop="14790" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E292146" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14450" e_stop="14790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCT</genome_strand>
        <mrna_strand>ATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E372888" ref_strand="+" ref_description="SGN-E372888 [TUS-32-B23]">
      <seq>attccagagatgtgttcttatggtgatttgagatcaaatatcctcttgtgttcactttttataagtacttcaattttgttttcctagaagttcttattgttggcatttttttaaaatgaaattttggtcgccaatgttaatttaggctagctactaggacagcgcttctatgactggcatacataggatgatctcatatagttatgatgtcggaagcatttagtcatgaatacatttggataggggaagattggaaacaaatcaattgcaatgatgctgttgtgtggatgctggtcttccctactttggaacttcgatgatattgctctgaaagaggtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="14150" stop="15090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14450" g_stop="14790" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E372888" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14450" e_stop="14790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCT</genome_strand>
        <mrna_strand>ATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E263600" ref_strand="-" ref_description="SGN-E263600 [cLEG-60-B24]">
      <seq>tgaagggcgtggtacgagtgacaaacctaccctgatgcttctgaacacattagcgaagtgttgaatcgcgttaagaaggagcatcttaaaagagcttataagatagagaattgggttgacgagtatgactttcttcaacagctatgcaagtcttcaggcaaacttctgaagggaggtgaacctgactacaatactgctgccaagatggttctccatgattggcaaagaggcaacattcctttctttgttccacctccaaagcttgatgatgagccaaatgaacttgtcgcagaggcagacacagccgttgataacgatcaggccacagctgctctcaaagctattgctgacgtcgtttcatcacaacaactgaaggaagttcctgttcaggaggaactatttagtaaggctgagctgttgggtgaaaactaatatgggcggattatcctttagacttgcaacatccacagttctggaatcgagttttcgtatatcgtttttacaatcttttagttgggtccattgcattcccagagttttctagtcctagaagagattgatatactggtcgaaaatatagatacctcgtatttttgttttaacgtttatttcgaattgagtgttaatggaaatgattaatatcatctagctcaacttgtttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="14913" stop="16930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15214" g_stop="15314" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="113" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15315" i_stop="15590" i_length="276">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15591" g_stop="15648" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="171" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15649" i_stop="16136" i_length="488">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16137" g_stop="16629" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="664" r_length="493" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="665" polyA_stop="680"/>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E263600" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263600" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15214" e_stop="15314"/>
          <exon e_start="15591" e_stop="15648"/>
          <exon e_start="16137" e_stop="16629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACGAGTGACAAACCTA-CCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCCCAAAATTCCATATCTAGAATCTCTGTTCTGCTTAAATGATATTTTGATATTCCAGGGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAGGTAAATTGAAAATTTATAACTTGATGATTATATTTTGTTATACTTTTCATTAGTCTCTCGGGTATGATCTGAAGTGTTTTGTGCTGTTTGTCAGCTCATATAGGACGATCACTTAAACCGGTTCCTTTTATGTTTTTTCATTAGTTCATGTAGGACAAAGTGAAGCTCACTAGACGAACACTTGGTAGTCAAAGTTAAAGTTATGTAGCAGTATTGTTGGACAAAAATAATTGAGAACTCAGTTGGCCTCTAATAAGTGTTAATTGTGAAGTAGCACTTTCAGGTTGAGAAATGATTTCCTAAATGATAGAAAAATTGTAATGTCAATTTTATATATATCTTTATTCTACAGGGATTTTCGATAAAATTTGCATATTTGGCTACAATTCTGCAATGTGCTTGACATCCTTGTACTACTTTTCTTTTAGTGCTTATGGCTGTCCAGAGAGTAGTATAGTTGGTATAAAATCTTAATTTGTGCTATTCAGGGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAG</genome_strand>
        <mrna_strand>GTACGAGTGACAAACCTACCCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG....................................................................................................................................................................................................................................................................................GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E356339" ref_strand="+" ref_description="SGN-E356339 [cTOS-20-I24]">
      <seq>ggcaaagaggcaacattcctttctttgttccacctccaaagcttgatgatgagccaaatgaacttgtcgcagaggcagacacagccgttgataacgatcaggccacagctgctctcaaagctattgctgacgtcgtttcatcacaacaactgaaggaagttcctgttcaggaggaactatttagtaaggctgagctgttgggtgaaaactaatatgggcggattatcctttagacttgcaacatccacagttctggaatcgagttttcgtatatcgtttttacaatcttttagttgggtccattgcattcccagagttttctagtcctagaagagattgatatactggtcgaaaatatagatacctcgtatttttgttttaacgtttatttcgaattgagtgttaatggaaatgattaatatcatctagctcaacttgtttaagattgaagcttctttctgttctannnnaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="15886" stop="16951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16186" g_stop="16656" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="472" polyA_stop="486"/>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E356339" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16186" e_stop="16656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAGATTGAAGCTTCTTTCTGTTCTATACGA</genome_strand>
        <mrna_strand>GGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAGATTGAAGCTTCTTTCTGTTCTANNNNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E355006" ref_strand="+" ref_description="SGN-E355006 [cTOS-19-N1]">
      <seq>tttctttgttccacctccaaagcttgatgatgagccaaatgaacttgtcgcagaggcagacacagccgttgataacgatcaggccacagctgctctcaaagctattgctgacgtcgtttcatcacaacaactgaaggaagttcctgttcaggaggaactatttagtaaggctgagctgttgggtgaaaactaatatgggcggattatcctttagacttgcaacatccacagttctggaatcgagttttcgtatatcgtttttacaatcttttagttgggtccattgcattcccagagttttctagtcctagaagagattgatatactggtcgaaaatatagatacctcgtatttttgttttaacgtttatttcgaattgagtgttaatggaaatgattaatatcatctagctcaacttgtttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="15905" stop="16930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16205" g_stop="16637" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E355006" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16205" e_stop="16637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAGATTGAAGC</genome_strand>
        <mrna_strand>TTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E258121" ref_strand="-" ref_description="SGN-E258121 [cLEG-48-N3]">
      <seq>aaagcttgatgatgagccaaatgaacttgtcgcagaggcagacacagccgttgataacgatcaggccacagctgctctcaaagctattgctgacgtcgtttcatcacaacaactgaaggaagttcctgttcaggaggaactatttagtaaggctgagctgttgggtgaaaactaatatgggcggattatcctttagacttgcaacatccacagttctggaatcgagttttcgtatatcgtttttacaatcttttagttgggtccattgcattcccagagttttctagtcctagaagagattgatatactggtcgaaaatatagatacctcgtatttttgttttaacgtttatttcgaattgagtgttaatggaaatgattaatatcatctagctcaacttgttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="15923" stop="16930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16223" g_stop="16622" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="404" polyA_stop="422"/>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E258121" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258121" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16223" e_stop="16622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTT</genome_strand>
        <mrna_strand>AAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="32662" stop="33557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32962" g_stop="33283" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32962" e_stop="33283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGGAC-TTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTTTAACACGAAGATATACATTTTTACATGTGTATATACAATTTTTTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTCTGTGTATAAAGCGAAAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="32662" stop="33557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32962" g_stop="33266" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32962" e_stop="33266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGGAC-TTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTTTAACACGAAGATATACATTTTTACATGTGTATATACAATTTTTTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTCTG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E392727" ref_strand="+" ref_description="SGN-E392727 [TUS-37-J5]">
      <seq>taatatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtcacgctttatacaaaatttaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="32662" stop="33412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32962" g_stop="33112" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E392727" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>151</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32962" e_stop="33112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAATT</genome_strand>
        <mrna_strand>TAATATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCACGCTTTATACAAAATTTAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E745722" ref_strand="+" ref_description="SGN-E745722 [GI|47105148]">
      <seq>ggtctctctcctcactctttcttcttttctccttccttcatagttccttccttccttctccgaaaagctagcggttgagtctgaagagtgaacaatatattgttcgaatggagagagccgataaaaaacttcattaaagctacttcgtttggctctcattctctatctatcatcggccggcaagtttatacacggttcttatttcatcttatactgcaaggatgaagatggaggcacctccttcgacaatcttgtttactgatgatgatagcaagaacctggagcaattgcttgatgtctttggatctgttgtctctctcgatgacatcgctgcagcttattgtaaagcaggtcgggatccaattattgcaggtgatatacttggagatcagaaacctagcagctccggaactactaactctgagatggaagaaaacatagaggattccgtgactctgacttctgaatttgaggaagtaggggactctatgatatcgacatctgcatctgtatctgagattgatgccaagagagttggtcccaggtcatcaaagcaaaaaaaagttatcagtgtctatggggactgtctcaagcatgatcccaaaagactatctgacgaataggccactaattacagaaacttctacgagaatcaagccactgaaattaagcgcagatgatttcttaaccccagagctaagggaggagaaagctccattaggtgctgcagctatgagtgaaaccctgcccagcagtgtagaggagttcctcttcaacatgctgggaagcggattttctcttgacaggagtgtaattggagatgttgttggtcaatgcagctacgatctgaacaagagtatggataagctgctagatatgtccgcatcaactttgggaaagagcgatgatattataaatataggtgtcaagaaatctgtggagagttcagattttgcatcagttgtatcaaaagagacatcttcaatgacagatccagccatccgttccaaagcaaatgagaagactaaaaatgggctcaagttatctatgaaggagcaggaaaggtatgagattcaaaaggaagttctgcatgcattgtttgatgtacctgcagcttcaagatatgataatgtggatgaagtgattcgtccggtgaaggaagttgggaagtctagtagattaaatctcgttgtagataaaccattacaggagactttagaacgccagattcttatcaggacaccacaaagtgatgcaaaaaatggtgaggaggatgaagaaagctacgaagttcttcggaaagctgtaaaggagtactggattacaatgaaagagtactataatgcagcttctgaagcattctccaaaggagatcatgatcaagcacgcaaattcctggaagagggacaatttttcatgacgaaggcgcaagtgacggatgaaaaatcctctcaaaagcttcttgaaaccagttgcagttccagcaaagaaattgtgacactcgaccttcacgatttggagccaaaggatgcagtgcgcttactcaaacttcagttgacttctctttgtggattctcgtctattcaatatctcaaaatcttagttgggatcactgctgaagaagctaaaggtccccggaagcgtctggtactgaaatttttggagagggattccataccatggacggaggaagaaaatggcacagtgcttgtgataagagtggatgtgatagatccgcggaaaatgacttttgctaaaaaatcaactgccagagtccgataaatacatcactgaatagatcattgttctaaagcatgaattttgtatcaacttggatcttgtgaaatgctttgatgcttctgcattttttataaccacaaggaacaaccttggccttgctaccaaaaagacttgtatttgattctttaatttctcttcttaattctcaagccggtgagcaagttttgcttaggcaccgatttacttggtaaagactaatagcaaattgatttcagaagtacattatatgaaacatgcaatgctttgacgtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="36209" stop="46238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36508" g_stop="36699" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36700" i_stop="37711" i_length="1012">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37712" g_stop="38347" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="829" r_length="637" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38348" i_stop="38738" i_length="391">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38739" g_stop="38764" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="830" r_stop="855" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38765" i_stop="39601" i_length="837">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39602" g_stop="39679" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="856" r_stop="933" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39680" i_stop="41304" i_length="1625">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41305" g_stop="41375" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="934" r_stop="1004" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41376" i_stop="41505" i_length="130">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41506" g_stop="41762" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1005" r_stop="1261" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41763" i_stop="42422" i_length="660">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42423" g_stop="42508" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1262" r_stop="1347" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="42509" i_stop="42644" i_length="136">
            <donor d_prob="0.706" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="42645" g_stop="42701" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1348" r_stop="1404" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="42702" i_stop="43243" i_length="542">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="43244" g_stop="43311" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1405" r_stop="1472" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="43312" i_stop="43403" i_length="92">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="43404" g_stop="43510" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1473" r_stop="1579" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="43511" i_stop="43923" i_length="413">
            <donor d_prob="0.745" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="43924" g_stop="43948" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1580" r_stop="1603" r_length="24" r_score="0.640"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="43949" i_stop="44008" i_length="60">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="44009" g_stop="44024" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1604" r_stop="1621" r_length="18" r_score="0.312"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="44025" i_stop="44161" i_length="137">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.883" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="44162" g_stop="44177" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1622" r_stop="1636" r_length="15" r_score="0.688"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="44178" i_stop="44370" i_length="193">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.577" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="44371" g_stop="44380" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1637" r_stop="1644" r_length="8" r_score="0.600"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="44381" i_stop="45531" i_length="1151">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="45532" g_stop="45935" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1645" r_stop="2048" r_length="404" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2051" polyA_stop="2065"/>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E745722" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>2049</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36508" e_stop="36699"/>
          <exon e_start="37712" e_stop="38347"/>
          <exon e_start="38739" e_stop="38764"/>
          <exon e_start="39602" e_stop="39679"/>
          <exon e_start="41305" e_stop="41375"/>
          <exon e_start="41506" e_stop="41762"/>
          <exon e_start="42423" e_stop="42508"/>
          <exon e_start="42645" e_stop="42701"/>
          <exon e_start="43244" e_stop="43311"/>
          <exon e_start="43404" e_stop="43510"/>
          <exon e_start="43924" e_stop="43948"/>
          <exon e_start="44009" e_stop="44024"/>
          <exon e_start="44162" e_stop="44177"/>
          <exon e_start="44371" e_stop="44380"/>
          <exon e_start="45532" e_stop="45935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTCTCTCCTCACTCTTTCTTCTTTTCTCCTTCCTTCATAGTTCCTTCCTTCCTTCTCCGAAAAGCTAGCGGTTGAGTCTGAAGAGTGAACAATATATTGTTCGAATGGAGAGAGCCGATAAAAAACTTCATTAAAGCTACTTCGTTTGGCTCTCATTCTCTATCTATCATCGGCCGGCAAGTTTATACAGTAAGATTTCGTTTCTCTTTTCTGTTCAATGATCAATCACACTGTTTATTGTTTCGTTGGCTGAAAAATTTGGTTCGGTTTCTATCATTGAATGATCTCCAGAAGTGATTTTGTAATTCGTATGAACCGAATTGGATTTTGCATTGTTTAGCATTTGTAGAAGTATGAATTATTATTAGTTTTTGGATTGGTTGCTTTTTGATGTTTAAATTTCAAGCTGAGAATGTTCATCTGGATGTTATATTCGTTGATTGATTTTGTTTTGTGTGAGTGCATTGTTGTGTTAGTTGTAATTTTTGGTGTGGAAAGTGATGGAATGAAATGCCTGATTTTAATTTGTGACCTAGACGTTTAGTATTGTTTCATTTCATGAATATTGTTTAGGAGTTCGGCTCTTAAATCACAGTGATTTTCTTCTCTTTTTTTTTCGTTCATTGGAATAGACTGAGTTATAGTGTGTCAGCATCTTTTCAGGGGTGATAGTTGTATGCTTAATGTAATCTTCATTGATTTGAGGAAGAATATCAAATTTTGTTAATGTGCTTTCATGCTGCATCTGAATAGTTCTAAACTTTGGCATTACTAACGAGATTCGTTTGGCCGTGGATGATTAGAGAAGTGGATTAGTTTGTTTCAGTTGTAAATCATTTGTTCAGACCAAAGGATTTTACTTACACACGTGTATGGCAGTGTAAATACTGTATAGACTAGTTCTTTGATCGCTTATGTTAGTTAGATCTAAACAACCAGTTAGTAGGAGTTCTCAATTTTACTTATCAAAAAGTAGTATTTCTCCATTTTTACTATTGTTATTAGTTGCTTTTCTCCTGTCACAACTGTTGGTTCTCTGTACATTCTGTTATCCGTGAAATGTTGGATTCTCTTGTTGTTATGCCATCCAATCTCTGCCATTTTCCTTTATTTTGCGGTTTCTGCTATTCTACAAATTGTTAAAAAGCCTTTGATTAATAAGTGATGTTCTCAATATGGTTGCTTCTTTACTTCTTATCAGCGGTTCTTATTTCATCTTATACTGCAAGGATGAAGATGGAGGCACCTCCTTCGACAATCTTGTTTACTGATGATGATAGCAAGAACCTGGAGCAATTGCTTGATGTCTTTGGATCTGTTGTCTCTCTCGATGACATCGCTGCAGCTTATTGTAAAGCAGGTCGGGATCCAATTATTGCAGGTGATATACTTGGAGATCAGAAACCTAGCAGCTCCGGAACTACTAACTCTGAGATGGAAGAAAACATAGAGGATTCCGTGACTCTGACTTCTGAATTTGAGGAAGTAGGGGACTCTATGATATCGACATCTGCATCTGTATCTGAGATTGATGCCAAGAGAGTTGGTCCCAGGTCATCAAAGC-AAAAAAAGTTATCAGTGTCTATGGGGACTGTCTCAAGCATGATCCCAAAAGACTATCTGACGAATAGGCCACTAATTACAGAAACTTCTACGAGAATCAAGCCACTGAAATTAAGCGCAGATGATTTCTTAACCCCAGAGCTAAGGGAGGAGAAAGCTCCATTAGGTGCTGCAGCTATGAGTGAAACCCTGCCCAGCAGTGTAGAGGAGTTCCTCTTCAACATGCTGGGAAGCGGATTTTCTCTTGACAGGAGTGTAATTGGAGATGTTGTTGGTGAGCACTTTACCTATGTCTACACTTAGTGTTTGTAAGATTATTTGATAAGTAGTGCTGCCACATGGAGTAATTCTACTTATACTTCCAATGACCTGAACTTGTGTCATTTCTTTCTTCACTTCTTTTCATTGATCTTCTAATGAAACTTGCAAAAGTTGGTTAAATGTTTCTTTATAGTCTGTTTTGAGACTTGATTTGTTAAGTAGAATGCAACTTGAGGATGGTCCACTTGTTCAGTTTGTCTCAGATATCTTTAAATTCTGTTCCCTTTTTTCTTCCTTATAACTGCATTGTAATTCCTATGAGCTTATAACTGCATTCTAATTCCTAGGAGCTGTCACAACTTTTGGATAATCTCCTTCCTAATTTGGTATTGTTGGATATACAGGTCAATGCAGCTACGATCTGAACAAGGTTAGTGATATCAACTCAACCACTTTGTATACTTTATATGTGTTTTTCGAGGCATCAAATGCTAATATTATATTTGGCTCAATTTTATGTTTACATTCAGCATATGCATGTTTGCACTTAACTCTTATGCTGTTACTCCGTAATTGGCACCACATTGTTATATGCTAAGCACATATGTGAAAGTTGCTCTTCTAAGCACCTGCAAATACCATTTAACCTGCTTATTCTCCGCCCTCCTTTTATTATTACCTATGAAATCTTGAAAGTAAGTCCTCAAAACGCTTTTCTAGGTCCTTCTCAAAGTCAATCCCGTTGCTGGTTTGGTTTTTGTGGCTTAAGTTTAAGTAGTTTTGATGTATGTGGTTTGAAGTCCACATTTAACTAGAAAATAAATTATGCTCCATTCTACTTATCAGAATAGCTATTAAGCCTCTATCACAGTTAAAGTAATTACCTCATGTACCTAAATTTAGCTTGTGGATTTAGGAACCAATGAATGAATTTCTTGCTAACTGTGGTTAACTTTCATGGCGAGAAACCTCAATGCATGTGTGGGATCATACATAAATGCCAGGAGGATGAGGCCAGGTTGCAGAAGCTTAGTTCTCATACTAAGCAGAAAAGACAATGCTCGGTTATTGCTGTTTGATCTTCTGATTCCGAATATATCAGCCTGATAACAATTTTGTAGTTCCTGCTTGGGTGCTTCTATCTTTTCGTTTCAGAATTTTTGCATGCACACTAGACATAGATTGGCTTACTTCTCTACAGAGATTTATATATCGCTCTAATCTTGCATTTTCATTATATTACACCCCCTTTCCGCTGAATATGCAGAGTATGGATAAGCTGCTAGATATGTCCGCATCAACTTTGGGAAAGAGCGATGATATTATAAATATAGGTGTCAAGAAAGTAAGTTTTCTTGTATGTCACTTGGTGTTGCTCATGTCTGCTGTAAAACTAGATACATCACTTACAAGCGAACTGCTATTTAATGATAGTGATCTTAGTCAGGCAATCTGCTTCCTAGCCACGCTCTTGAAGGAAAATGAGACAGCTTTTTCACAATAAAATTCTAGGAAAGGATAGTGTCTTATCTTTCTCTTTATTCTCCTTTTCCTCTCCCTTAACCCATTCACTCCTCACCCAGTTTGTTCTCTCCACCATGCTCACTCTGTCACCTGACCTGAGAAAAGTCCTTATGACTGGAGTTACTACTGTACTAAGGATCAGTTTTGCTTTGAGAAAAGGGTTCCACATCTATACAATAGGTTGATATCTTGACAGAACAGCCAAAGACCAGATATGCAGTAGAATTTATTTTCAAAAATAGATTCAAGTTAAATAACCTACTGATGTGACTACAGACTACAAAAATGAGCAGTGTATTCCTTTTGGGAGGTAATTTTGTAAGGGATTCTATTCATAAAAAATAGGTTTCTATGAGGTAGCTTCTCTAGAACTGGAAACAGTTTTGGATCTGTAGTGATGCAGTCCGCTTGAACTACTTGACGTTGCATCTAGCTGTAAAAAGAGCTTACAAGATTAATAATGTTCAATTCATTCACCATATAAATATCCACATTCCTTTGAATTGTAGGAATTACTTTTGTATTTTGTTGGCTACTATACTGCTAAGTTAGGTCAGACCAGATTTCCCCGTCTCTGAAATCAAAGGGAATAGATAACCAACCACTCTTCTCCTATCCCTGATTACCTGAGGTGCTGCAGCATTAAGAATTTATTTTTAAAAGTAAGGATCACAAACTATCTTTCAGGCATTATATTTAGACAGCCTTTAAACTAGTCCAGATATTCTATTCAACCACTTAAACTCAACCTATGACCATTTGAACACCTTACCTGTACTAAAAGTGTCATTCAGCCCCAATTTATACAAAAAAAGCTGTGTAACTCACACACATATGATGTGGCAGAAAGACAAATAAAACCATGACATGTGCATATGGACTCAAATAATCATTAAAAGAAAGAAAAGCTTAGTTTCTATAACGCATTCCTGCCCACTCAATCCTCCATTTCCTCTTTCTTCCTCCTTGGAGATTTCCTTCGACCCCCCCATTGCTTTCCACCCATTTCTTTCTCATTTTTCTCTTTATTCCTTTTGCTTTCAAAAAAAATTCCGCCAGAAGTTTCTGCCCGACTCGAAAAGTATGAAGATTGGCTGAAATTTTTATGGATATTTGTCAGAAAAAAATTCTCTCTGGCCAACCTTTTCGTTCATCTATTTAATCTAATATTCTAGTTTAGCATTTGCATGATAAATTATGGACTAGAGTCATGAGAAAAATGATTGTTTATAGAACATGTGCGATATAGCTGAGGTTTATGATGGTTGAAAATGGTGGTCGGGTGGCAGACCACCTGAAAGAGAAGAAAGGGGGGTGGGGGGTGGACTATGTATTACACCTATCTTTAATGGTAATTCTATAGTAGTTCCATATGCAATTTAAATTGTTTAAATCACATAAAATAATTTCCTTACTTACTATGCTTTCTCTAATTTACTATAACAGTCTGTGGAGAGTTCAGATTTTGCATCAGTTGTATCAAAAGAGACATCTTCAATGACAGATCCAGCCATCCGGTACTCTGTCCTCCAGAAACTATAATTTAATGTCCAGGAAGTTCTCTTTTTTTTTTGGTTAAACTGATTTTGTAGATTTTCAAGGTGTTGTTATGGATTGACTGTCATCCTTCTATTTTTGCTGATGCAGTTCCAAAGCAAATGAGAAGACTAAAAATGGGCTCAAGTTATCTATGAAGGAGCAGGAAAGGTATGAGATTCAAAAGGAAGTTCTGCATGCATTGTTTGATGTACCTGCAGCTTCAAGATATGATAATGTGGATGAAGTGATTCGTCCGGTGAAGGAAGTTGGGAAGTCTAGTAGATTAAATCTCGTTGTAGATAAACCATTACAGGAGACTTTAGAACGCCAGATTCTTATCAGGACACCACAAAGTGATGCAAAAAGTAAGCAGCACTAACTGCTTATTACTTGTGTTGGACAGATGAAAAAGTGTTTATGGTACATTTGGCTTTTTCTAAAGGTTTCATATCTTCTTTTCAATTGCCTTTTTTTCTATGATTTTGTACTCTTTTATGGCAAGATTGCTTTTTCCAGTTGAATCTGCCGTTGGCAACCAGAAACTGGAGAACTTTTTTTTTTCTTTTTCTCTTCTTAGTCGTATAAGTTCTATATGTTGGAGCAAGTAAGAAATAGAAAAATGCTCCCCCTCTTTATGGTTCGTCTTTTACTTGAGGTACCTTGAGCTTTATTTTATGGAAGTGAAATTACCATTTAACTTAACTGGACCCATAAAGACATCCATTCGTATCGAACCATATGGATGTCGGCCTGGAACAAGTGCAAGTATATTCCTGTCTTAGGTATACACTTATCCCTTGGAAACAGAGACCTAAACCTCAAAGTACCCTATACATTCACAGAAAAGATATTAGAATATTATATGTACTGGTGAAAAGAACATACCCAGGTAAACCTCACTAGTGGGGTCTGGTAAGGGTAGGATGTATGCAAATGCATGGATATTTGTAGCTATCCAGTACTCCTTTAGGATAGCTATTTGCTTCATTTTCTCATGTAAAACACCTCTTGTTCTTCAATTTTAGATGGTGAGGAGGATGAAGAAAGCTACGAAGTTCTTCGGAAAGCTGTAAAGGAGTACTGGATTACAATGAAAGAGTACTATAATGCAGTGAGTCATGGATACCTCTCTTCTACAGTTTCATGATCTAAATACCATTAAGATGCTTCATTCTGTGTCGAGCGAGAAGAAGAAAGTTTAGTATGTTAAATCTTGACTGGTATTACAAACTTAAATTGTTACCCAGGCTTCTGAAGCATTCTCCAAAGGAGATCATGATCAAGCACGCAAATTCCTGGAAGAGGTAGGGTGTTTGTTCCTTTATGTAGAGTGTCTTGACTGTTTGTATTTGAAAATATAAGTGAAGAAATAACTAGCCTCCATAGTCTCTATGAGATATTCTACTGATTGGTGTCGGCTGAGTAGGTGGTGTAGAGTTACTATCTTAATTAGCTCCATTAGGTGGTCAGAGTCTGAGCATTTCGTCAACTTCCTTCAAAGTATCCAAATATTTTACTTGCTTCTTGCTTTACACCTATCAAGGGAGGTTTTAGCTTCAACTTAGCCTACAAACATCGTAAAAAGCAAAGTAACATGCCAGGTTCAAGTTCTTCATATTCATCGACAGCTTTCACTTCTAGCACAATGAAAGAGAAAATACTCATAACATCACCTGTCACGGGAAAAAGAAGAAAAATAGCTCCAAATTGATGCTGGGTATAAATGTCCAATTTGTGCAAACTGTTCTCTTCCCATAAAGTTGACCTTGCCTTGGCTGATCCACTTGTTTAAATTTTCATTATGGTGGTGTGCTGGCATTTTACTCATTATCTTCTCATGAAACAGGGACAATTTTTCATGACGAAGGCGCAAGTGACGGATGAAAAATCCTCTCAAAAGCTTCTTGAAACCAGGTTAGGCAGAAGTCTGGCTTCCTTTCTCTTTTCTTTCTCTACTCATGTATGTTGCTTACAGGGCTTGTATTTACCGAATACTCCAACCTTAGTTGCAGTTCCAGCAAAGAAATTGTGACACTCGACCTTCACGATTTGGAGCCAAAGGATGCAGTGCGCTTACTCAAACTTCAGTTGACTTCTCTTTGTGGATTCTCGTGTAGGTTATCGTCATTATAGGACTTCGTCAATTGTTTTTATATAAAAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTGGTGCTGATATGTTTGAATAATTTGGTCTATCTGCTGCTGTTTTTCTCACGGGTATATGTTACTGACAATTGGAATATTGTAATCTTCAATTTTTTGGGGCAACACTGTAAATATTACTATTGACAAACCAAGTCAGCATAGAATACAAGCCTAAGAGCACCTAGCCATTTCCTTCACCTCTTATGAAGGTAAAGATGATCATAGGCCTCAAAAACGAGTCTAATTACATGTATATTCTCTCTTTAAGCCCCCTAGATCTATCCAACTTCTTCTGCATATAAGGTAGATTTGATCTATCTATTAACTCCTTACTCTGTGTAATTGCCCTCTCTATATCTACAGTT-TG-TCCCTTGAACAGGTTCCAGTTCTGGGCCCTCCAAGTATAAATGACCATTGCCCCCCACACAGCAGCTACTATCTTCTTCTGGATTAACTTCTAATGCTTCCTTCTATTTCCTCCCTTACATTTTTAAACCAGTCACACTCAAATAACAGATGCTGAGATGTCTCCATATCAGCAGATCCACAAAGACAGCAGTGCAGGTCATCCACCTGAATGTTTAGCTGAAGAAGTCTCCTTTTCTGATAGCTAACAATAAACTTGTGTTTTGGTTGTGCAACATCGTTCATCTCTGTTCTGCAGCATTTTCCTTTTTTTTCCTACAACATCATGTAGCTTCTAGAGATTGAGTACCTTCCTCCAGGTGTAAGATTATATCCCTGGGTAAACCAAGCCCAAACTGTGGAATCATCCTTCATTTCACCCTTAGTGAGCCCTTATCCACCACTAATTGCCATAACAGTTCCCTACTTATGCAAGATTCCAGATTCTGCTGCCCTTGATATTAAAGCCTTCATTACCCTTAGGTACGCAAACTGTATCCCAAGCTACAAGGCTCACTTTCCTCTTTTCTTCATTGCCCCCATAGGAACATTCTACATCTTCTATCAACCTTTTTCAACACACTCTGGGGGCTGTATTAACACCATACCCCAGAAGTTATGAATGGAGAACAACACATCAACAATCACTTGTAATCTCCCAGCGTAGGACAATTGCTTAGAATACCCTGTACTAATTTTATCTGATATCTTATTAATCAGAGTGGCAGGATCTACAGAGTACTTTTGAAGAAAATGGTTGTTTTTTATTCTTCCTGCCTCTGCCATGTTATACACGTATGCCTCTGCCATTGTTCAGAAAATTTGGCCTCAAGTCTAAACAATTCAGTCCAGATTGGTAACTCAAGAAGATAATAGACCTTAAATCTGACATATGAGAACAATTAAGCTGTGTATGCCAGTTTATCTTTTCACCTCTTAAAATATGCAAGTGGAAATTCCATCTGCATCTTTCATAAATGTGAAAACCACAATGTTCTGACGTCGAAACACTGCTGAATGGACAGTATTAACTATACAGTCAAGTACCTTCTAGTACTCTACTATAGGTGTCAGTTTATGGTCCTTGTAACCAATTACAGTAGTATAAGTTACGAAAAATTAATGTGATATCCAAACTGTTTCTTTCTTCTAGGAAATAATATATAATCTATTTCAAAATGTACATATAAGAAACAATTGTGGTTTAGAGAATGTTTTAGTGTCGACTCTTCTCATTTTCATTATTTTGATCGCGAATATTATCTGTATAGGACTTTGGATAGGTTAGGGTTGAGACTTTCTCCCATGCTGTAGGATTAACAAAAAATTCATTATGAACTTATTCGATCTCTGTTGTTTCATATCCCAGATAGTATGTCCAATTGAATTATTTTTCTCCATTCTATGTCTATTACATCTCATTTCTTTAGCTACTTGAATCGACATTGGACAAATAGAAGTATGAGACAGATATTTGTAAACAGGTACTGAAATTTTTGGAGAGGGATTCCATACCATGGACGGAGGAAGAAAATGGCACAGTGCTTGTGATAAGAGTGGATGTGATAGATCCGCGGAAAATGACTTTTGCTAAAAAATCAACTGCCAGAGTCCGATAAATACATCACTGAATAGATCATTGTTCTAAAGCATGAATTTTGTATCAACTTGGATCTTGTGAAATGCTTTGATGCTTCTGCATTTTTTATAACCACAAGGAACAACCTTGGCCTTGCTACCAAAAAGACTTGTATTTGATTCTTTAATTTCTCTTCTTAATTCTCAAGCCGGTGAGCAAGTTTTGCTTAGGCACCGATTTACTTGGTAAAGACTAATAGCAAATTGATTTCAGAAGTACATTATATGAAACATGCAATGCTTTGAC</genome_strand>
        <mrna_strand>GGTCTCTCTCCTCACTCTTTCTTCTTTTCTCCTTCCTTCATAGTTCCTTCCTTCCTTCTCCGAAAAGCTAGCGGTTGAGTCTGAAGAGTGAACAATATATTGTTCGAATGGAGAGAGCCGATAAAAAACTTCATTAAAGCTACTTCGTTTGGCTCTCATTCTCTATCTATCATCGGCCGGCAAGTTTATACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTTCTTATTTCATCTTATACTGCAAGGATGAAGATGGAGGCACCTCCTTCGACAATCTTGTTTACTGATGATGATAGCAAGAACCTGGAGCAATTGCTTGATGTCTTTGGATCTGTTGTCTCTCTCGATGACATCGCTGCAGCTTATTGTAAAGCAGGTCGGGATCCAATTATTGCAGGTGATATACTTGGAGATCAGAAACCTAGCAGCTCCGGAACTACTAACTCTGAGATGGAAGAAAACATAGAGGATTCCGTGACTCTGACTTCTGAATTTGAGGAAGTAGGGGACTCTATGATATCGACATCTGCATCTGTATCTGAGATTGATGCCAAGAGAGTTGGTCCCAGGTCATCAAAGCAAAAAAAAGTTATCAGTGTCTATGGGGACTGTCTCAAGCATGATCCCAAAAGACTATCTGACGAATAGGCCACTAATTACAGAAACTTCTACGAGAATCAAGCCACTGAAATTAAGCGCAGATGATTTCTTAACCCCAGAGCTAAGGGAGGAGAAAGCTCCATTAGGTGCTGCAGCTATGAGTGAAACCCTGCCCAGCAGTGTAGAGGAGTTCCTCTTCAACATGCTGGGAAGCGGATTTTCTCTTGACAGGAGTGTAATTGGAGATGTTGTTG.......................................................................................................................................................................................................................................................................................................................................................................................................GTCAATGCAGCTACGATCTGAACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGGATAAGCTGCTAGATATGTCCGCATCAACTTTGGGAAAGAGCGATGATATTATAAATATAGGTGTCAAGAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTGGAGAGTTCAGATTTTGCATCAGTTGTATCAAAAGAGACATCTTCAATGACAGATCCAGCCATCCG..................................................................................................................................TTCCAAAGCAAATGAGAAGACTAAAAATGGGCTCAAGTTATCTATGAAGGAGCAGGAAAGGTATGAGATTCAAAAGGAAGTTCTGCATGCATTGTTTGATGTACCTGCAGCTTCAAGATATGATAATGTGGATGAAGTGATTCGTCCGGTGAAGGAAGTTGGGAAGTCTAGTAGATTAAATCTCGTTGTAGATAAACCATTACAGGAGACTTTAGAACGCCAGATTCTTATCAGGACACCACAAAGTGATGCAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGAGGAGGATGAAGAAAGCTACGAAGTTCTTCGGAAAGCTGTAAAGGAGTACTGGATTACAATGAAAGAGTACTATAATGCA........................................................................................................................................GCTTCTGAAGCATTCTCCAAAGGAGATCATGATCAAGCACGCAAATTCCTGGAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAATTTTTCATGACGAAGGCGCAAGTGACGGATGAAAAATCCTCTCAAAAGCTTCTTGAAACCAG............................................................................................TTGCAGTTCCAGCAAAGAAATTGTGACACTCGACCTTCACGATTTGGAGCCAAAGGATGCAGTGCGCTTACTCAAACTTCAGTTGACTTCTCTTTGTGGATTCTCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................CTATTCAATATC-TCAAAATCTTAG............................................................TTGGGATCACTGCTGAAG.........................................................................................................................................AAGCT-AAAGGTCCCC.................................................................................................................................................................................................G-G-AAGCGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGTACTGAAATTTTTGGAGAGGGATTCCATACCATGGACGGAGGAAGAAAATGGCACAGTGCTTGTGATAAGAGTGGATGTGATAGATCCGCGGAAAATGACTTTTGCTAAAAAATCAACTGCCAGAGTCCGATAAATACATCACTGAATAGATCATTGTTCTAAAGCATGAATTTTGTATCAACTTGGATCTTGTGAAATGCTTTGATGCTTCTGCATTTTTTATAACCACAAGGAACAACCTTGGCCTTGCTACCAAAAAGACTTGTATTTGATTCTTTAATTTCTCTTCTTAATTCTCAAGCCGGTGAGCAAGTTTTGCTTAGGCACCGATTTACTTGGTAAAGACTAATAGCAAATTGATTTCAGAAGTACATTATATGAAACATGCAATGCTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E315326" ref_strand="+" ref_description="SGN-E315326 [cTOA-24-N23]">
      <seq>ttccttccttccttctccgaaaagctagcggttgagtctgaagagtgaacaatatattgttcgaatggagagagccgataaaaaacttcattaaagctacttcgtttggctctcattctctatctatcatcggccggcaagtttatacacggttcttatttcatcttatactgcaaggatgaagatggaggcacctccttcgacaatcttgtttactgatgatgatagcaagaacctggagcaattgcttgatgtctttggatctgttgtctctctcgatgacatcgctgcagcttattgtaaagcaggtcgggatccaattattgcaggtgatatacttggagatcagaaacctagcagctccggaactactaactctgagatggaagaaaacatagaggattccgtgactctgacttctgaatttgaggaagtaggggactctatgatatcgacatctgcatctgtatctgagattgatgccaagagagttggtcccaggtcatcaaagcaaaaaaagttatcagtgtctatggggactgtctcaagcatgatcccaaaagactatctgacgaataggccactaattacagaaacttctacgagaatcaagccactgaaattaagcgcagatgatttcttaacccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="36251" stop="38510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36551" g_stop="36699" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36700" i_stop="37711" i_length="1012">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37712" g_stop="38210" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="648" r_length="499" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E315326" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36551" e_stop="36699"/>
          <exon e_start="37712" e_stop="38210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCCTTCCTTCTCCGAAAAGCTAGCGGTTGAGTCTGAAGAGTGAACAATATATTGTTCGAATGGAGAGAGCCGATAAAAAACTTCATTAAAGCTACTTCGTTTGGCTCTCATTCTCTATCTATCATCGGCCGGCAAGTTTATACAGTAAGATTTCGTTTCTCTTTTCTGTTCAATGATCAATCACACTGTTTATTGTTTCGTTGGCTGAAAAATTTGGTTCGGTTTCTATCATTGAATGATCTCCAGAAGTGATTTTGTAATTCGTATGAACCGAATTGGATTTTGCATTGTTTAGCATTTGTAGAAGTATGAATTATTATTAGTTTTTGGATTGGTTGCTTTTTGATGTTTAAATTTCAAGCTGAGAATGTTCATCTGGATGTTATATTCGTTGATTGATTTTGTTTTGTGTGAGTGCATTGTTGTGTTAGTTGTAATTTTTGGTGTGGAAAGTGATGGAATGAAATGCCTGATTTTAATTTGTGACCTAGACGTTTAGTATTGTTTCATTTCATGAATATTGTTTAGGAGTTCGGCTCTTAAATCACAGTGATTTTCTTCTCTTTTTTTTTCGTTCATTGGAATAGACTGAGTTATAGTGTGTCAGCATCTTTTCAGGGGTGATAGTTGTATGCTTAATGTAATCTTCATTGATTTGAGGAAGAATATCAAATTTTGTTAATGTGCTTTCATGCTGCATCTGAATAGTTCTAAACTTTGGCATTACTAACGAGATTCGTTTGGCCGTGGATGATTAGAGAAGTGGATTAGTTTGTTTCAGTTGTAAATCATTTGTTCAGACCAAAGGATTTTACTTACACACGTGTATGGCAGTGTAAATACTGTATAGACTAGTTCTTTGATCGCTTATGTTAGTTAGATCTAAACAACCAGTTAGTAGGAGTTCTCAATTTTACTTATCAAAAAGTAGTATTTCTCCATTTTTACTATTGTTATTAGTTGCTTTTCTCCTGTCACAACTGTTGGTTCTCTGTACATTCTGTTATCCGTGAAATGTTGGATTCTCTTGTTGTTATGCCATCCAATCTCTGCCATTTTCCTTTATTTTGCGGTTTCTGCTATTCTACAAATTGTTAAAAAGCCTTTGATTAATAAGTGATGTTCTCAATATGGTTGCTTCTTTACTTCTTATCAGCGGTTCTTATTTCATCTTATACTGCAAGGATGAAGATGGAGGCACCTCCTTCGACAATCTTGTTTACTGATGATGATAGCAAGAACCTGGAGCAATTGCTTGATGTCTTTGGATCTGTTGTCTCTCTCGATGACATCGCTGCAGCTTATTGTAAAGCAGGTCGGGATCCAATTATTGCAGGTGATATACTTGGAGATCAGAAACCTAGCAGCTCCGGAACTACTAACTCTGAGATGGAAGAAAACATAGAGGATTCCGTGACTCTGACTTCTGAATTTGAGGAAGTAGGGGACTCTATGATATCGACATCTGCATCTGTATCTGAGATTGATGCCAAGAGAGTTGGTCCCAGGTCATCAAAGCAAAAAAAGTTATCAGTGTCTATGGGGACTGTCTCAAGCATGATCCCAAAAGACTATCTGACGAATAGGCCACTAATTACAGAAACTTCTACGAGAATCAAGCCACTGAAATTAAGCGCAGATGATTTCTTAACCCC</genome_strand>
        <mrna_strand>TTCCTTCCTTCCTTCTCCGAAAAGCTAGCGGTTGAGTCTGAAGAGTGAACAATATATTGTTCGAATGGAGAGAGCCGATAAAAAACTTCATTAAAGCTACTTCGTTTGGCTCTCATTCTCTATCTATCATCGGCCGGCAAGTTTATACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTTCTTATTTCATCTTATACTGCAAGGATGAAGATGGAGGCACCTCCTTCGACAATCTTGTTTACTGATGATGATAGCAAGAACCTGGAGCAATTGCTTGATGTCTTTGGATCTGTTGTCTCTCTCGATGACATCGCTGCAGCTTATTGTAAAGCAGGTCGGGATCCAATTATTGCAGGTGATATACTTGGAGATCAGAAACCTAGCAGCTCCGGAACTACTAACTCTGAGATGGAAGAAAACATAGAGGATTCCGTGACTCTGACTTCTGAATTTGAGGAAGTAGGGGACTCTATGATATCGACATCTGCATCTGTATCTGAGATTGATGCCAAGAGAGTTGGTCCCAGGTCATCAAAGCAAAAAAAGTTATCAGTGTCTATGGGGACTGTCTCAAGCATGATCCCAAAAGACTATCTGACGAATAGGCCACTAATTACAGAAACTTCTACGAGAATCAAGCCACTGAAATTAAGCGCAGATGATTTCTTAACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E282200" ref_strand="+" ref_description="SGN-E282200 [cLES-4-A15]">
      <seq>gaaaagctagcggctgagtctgaagagtgaacaatatattgttcgaatggagagagccgattaaaaacttcattaaagctacttcgtttggctctcattctctatctatcatcggccggcaagtttatacacggttcttatttcatcttatactgcaaggatgaagatggaggcacctccttctacaatcttgtttactgatgatgataacaagaacctggagcaattgcttgatgtctttggatctgatgtctctctcgatgacatcgctgcagcttattgtaaagcatgtcgggatccaattattgcaggtgatatacttggagatcagaaacctagctgctccggaactactaactctgagatggaagaaaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="36269" stop="38258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36569" g_stop="36699" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36700" i_stop="37711" i_length="1012">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37712" g_stop="37958" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="378" r_length="247" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E282200" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36569" e_stop="36699"/>
          <exon e_start="37712" e_stop="37958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGCTAGCGGTTGAGTCTGAAGAGTGAACAATATATTGTTCGAATGGAGAGAGCCGATAAAAAACTTCATTAAAGCTACTTCGTTTGGCTCTCATTCTCTATCTATCATCGGCCGGCAAGTTTATACAGTAAGATTTCGTTTCTCTTTTCTGTTCAATGATCAATCACACTGTTTATTGTTTCGTTGGCTGAAAAATTTGGTTCGGTTTCTATCATTGAATGATCTCCAGAAGTGATTTTGTAATTCGTATGAACCGAATTGGATTTTGCATTGTTTAGCATTTGTAGAAGTATGAATTATTATTAGTTTTTGGATTGGTTGCTTTTTGATGTTTAAATTTCAAGCTGAGAATGTTCATCTGGATGTTATATTCGTTGATTGATTTTGTTTTGTGTGAGTGCATTGTTGTGTTAGTTGTAATTTTTGGTGTGGAAAGTGATGGAATGAAATGCCTGATTTTAATTTGTGACCTAGACGTTTAGTATTGTTTCATTTCATGAATATTGTTTAGGAGTTCGGCTCTTAAATCACAGTGATTTTCTTCTCTTTTTTTTTCGTTCATTGGAATAGACTGAGTTATAGTGTGTCAGCATCTTTTCAGGGGTGATAGTTGTATGCTTAATGTAATCTTCATTGATTTGAGGAAGAATATCAAATTTTGTTAATGTGCTTTCATGCTGCATCTGAATAGTTCTAAACTTTGGCATTACTAACGAGATTCGTTTGGCCGTGGATGATTAGAGAAGTGGATTAGTTTGTTTCAGTTGTAAATCATTTGTTCAGACCAAAGGATTTTACTTACACACGTGTATGGCAGTGTAAATACTGTATAGACTAGTTCTTTGATCGCTTATGTTAGTTAGATCTAAACAACCAGTTAGTAGGAGTTCTCAATTTTACTTATCAAAAAGTAGTATTTCTCCATTTTTACTATTGTTATTAGTTGCTTTTCTCCTGTCACAACTGTTGGTTCTCTGTACATTCTGTTATCCGTGAAATGTTGGATTCTCTTGTTGTTATGCCATCCAATCTCTGCCATTTTCCTTTATTTTGCGGTTTCTGCTATTCTACAAATTGTTAAAAAGCCTTTGATTAATAAGTGATGTTCTCAATATGGTTGCTTCTTTACTTCTTATCAGCGGTTCTTATTTCATCTTATACTGCAAGGATGAAGATGGAGGCACCTCCTTCGACAATCTTGTTTACTGATGATGATAGCAAGAACCTGGAGCAATTGCTTGATGTCTTTGGATCTGTTGTCTCTCTCGATGACATCGCTGCAGCTTATTGTAAAGCAGGTCGGGATCCAATTATTGCAGGTGATATACTTGGAGATCAGAAACCTAGCAGCTCCGGAACTACTAACTCTGAGATGGAAGAAAACAT</genome_strand>
        <mrna_strand>GAAAAGCTAGCGGCTGAGTCTGAAGAGTGAACAATATATTGTTCGAATGGAGAGAGCCGATTAAAAACTTCATTAAAGCTACTTCGTTTGGCTCTCATTCTCTATCTATCATCGGCCGGCAAGTTTATACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTTCTTATTTCATCTTATACTGCAAGGATGAAGATGGAGGCACCTCCTTCTACAATCTTGTTTACTGATGATGATAACAAGAACCTGGAGCAATTGCTTGATGTCTTTGGATCTGATGTCTCTCTCGATGACATCGCTGCAGCTTATTGTAAAGCATGTCGGGATCCAATTATTGCAGGTGATATACTTGGAGATCAGAAACCTAGCTGCTCCGGAACTACTAACTCTGAGATGGAAGAAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E323450" ref_strand="+" ref_description="SGN-E323450 [cTOC-7-K6]">
      <seq>agtgaacaatatattgttcgaatggagagagccgataaaaaacttcattaaagctacttcgtttggctctcattctctatctatcatcggccggcaagtttatacacggttcttatttcatcttatactgcaaggatgaagatggaggcacctccttcgacaatcttgtttactgatgatgatagcaagaacctggagcaattgcttgatgtctttggatctgttgtctctctcgatgacatcgctgcagcttattgtaaagcaggtcgggatccaattattgcaggtgatatacttggagatcagaaacctagcagctccggaactactaactctgagatggaagaaaacatagaggattccgtgactctgacttctgaatttgaggaagtaggggactctatgatatcgacatctgcatctgtatctgagattgatgccaagagagttggtcccaggtcatcaaagcaaaaaaagttatcagtgtctatggggactgtctcaagcatgatcccaaaagactatctgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="36294" stop="38436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36594" g_stop="36699" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36700" i_stop="37711" i_length="1012">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37712" g_stop="38136" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="531" r_length="425" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E323450" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36594" e_stop="36699"/>
          <exon e_start="37712" e_stop="38136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAACAATATATTGTTCGAATGGAGAGAGCCGATAAAAAACTTCATTAAAGCTACTTCGTTTGGCTCTCATTCTCTATCTATCATCGGCCGGCAAGTTTATACAGTAAGATTTCGTTTCTCTTTTCTGTTCAATGATCAATCACACTGTTTATTGTTTCGTTGGCTGAAAAATTTGGTTCGGTTTCTATCATTGAATGATCTCCAGAAGTGATTTTGTAATTCGTATGAACCGAATTGGATTTTGCATTGTTTAGCATTTGTAGAAGTATGAATTATTATTAGTTTTTGGATTGGTTGCTTTTTGATGTTTAAATTTCAAGCTGAGAATGTTCATCTGGATGTTATATTCGTTGATTGATTTTGTTTTGTGTGAGTGCATTGTTGTGTTAGTTGTAATTTTTGGTGTGGAAAGTGATGGAATGAAATGCCTGATTTTAATTTGTGACCTAGACGTTTAGTATTGTTTCATTTCATGAATATTGTTTAGGAGTTCGGCTCTTAAATCACAGTGATTTTCTTCTCTTTTTTTTTCGTTCATTGGAATAGACTGAGTTATAGTGTGTCAGCATCTTTTCAGGGGTGATAGTTGTATGCTTAATGTAATCTTCATTGATTTGAGGAAGAATATCAAATTTTGTTAATGTGCTTTCATGCTGCATCTGAATAGTTCTAAACTTTGGCATTACTAACGAGATTCGTTTGGCCGTGGATGATTAGAGAAGTGGATTAGTTTGTTTCAGTTGTAAATCATTTGTTCAGACCAAAGGATTTTACTTACACACGTGTATGGCAGTGTAAATACTGTATAGACTAGTTCTTTGATCGCTTATGTTAGTTAGATCTAAACAACCAGTTAGTAGGAGTTCTCAATTTTACTTATCAAAAAGTAGTATTTCTCCATTTTTACTATTGTTATTAGTTGCTTTTCTCCTGTCACAACTGTTGGTTCTCTGTACATTCTGTTATCCGTGAAATGTTGGATTCTCTTGTTGTTATGCCATCCAATCTCTGCCATTTTCCTTTATTTTGCGGTTTCTGCTATTCTACAAATTGTTAAAAAGCCTTTGATTAATAAGTGATGTTCTCAATATGGTTGCTTCTTTACTTCTTATCAGCGGTTCTTATTTCATCTTATACTGCAAGGATGAAGATGGAGGCACCTCCTTCGACAATCTTGTTTACTGATGATGATAGCAAGAACCTGGAGCAATTGCTTGATGTCTTTGGATCTGTTGTCTCTCTCGATGACATCGCTGCAGCTTATTGTAAAGCAGGTCGGGATCCAATTATTGCAGGTGATATACTTGGAGATCAGAAACCTAGCAGCTCCGGAACTACTAACTCTGAGATGGAAGAAAACATAGAGGATTCCGTGACTCTGACTTCTGAATTTGAGGAAGTAGGGGACTCTATGATATCGACATCTGCATCTGTATCTGAGATTGATGCCAAGAGAGTTGGTCCCAGGTCATCAAAGCAAAAAAAGTTATCAGTGTCTATGGGGACTGTCTCAAGCATGATCCCAAAAGACTATCTGACG</genome_strand>
        <mrna_strand>AGTGAACAATATATTGTTCGAATGGAGAGAGCCGATAAAAAACTTCATTAAAGCTACTTCGTTTGGCTCTCATTCTCTATCTATCATCGGCCGGCAAGTTTATACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTTCTTATTTCATCTTATACTGCAAGGATGAAGATGGAGGCACCTCCTTCGACAATCTTGTTTACTGATGATGATAGCAAGAACCTGGAGCAATTGCTTGATGTCTTTGGATCTGTTGTCTCTCTCGATGACATCGCTGCAGCTTATTGTAAAGCAGGTCGGGATCCAATTATTGCAGGTGATATACTTGGAGATCAGAAACCTAGCAGCTCCGGAACTACTAACTCTGAGATGGAAGAAAACATAGAGGATTCCGTGACTCTGACTTCTGAATTTGAGGAAGTAGGGGACTCTATGATATCGACATCTGCATCTGTATCTGAGATTGATGCCAAGAGAGTTGGTCCCAGGTCATCAAAGCAAAAAAAGTTATCAGTGTCTATGGGGACTGTCTCAAGCATGATCCCAAAAGACTATCTGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E542943" ref_strand="+" ref_description="SGN-E542943 [TUS-64-I2]">
      <seq>gaacaatatattgttcgaatggagagagccgataaaaaacttcattaaagctacttcgtttggctctcattctctatctatcatcggccggcaagtttatacacggttcttatttcatcttatactgcaaggatgaagatggaggcacctccttcgacaatcttgtttactgatgatgatagcaagaacctggagcaattgcttgatgtctttggatctgttgtctctctcgatgacatcgctgcagcttattgtaaagcaggtcgggatccaattattgcaggtgatatacttggagatcagaaacctagcagctccggaactactaactctgagatggaagaaaacatagaggattccgtgactctgacttctgaatttgaggaagtaggggactctatgatatcgacatctgcatctgtatctgagattgatgccaagagagttggtcccaggtcatcaaagcaaaaaaagttatcagtgtctatggggactgtctcaagcatgatcccaaaagactatctgacgaataggccactaattacagaaacttctacgagaatcaagccactgaaattaagcgcagatgatttcttaaccccagagctaagggangagaaagctccattaggtgctgcagctatgagtgaaaccctgcccagcagtgtagaagagttcctcttcaacatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="36297" stop="38600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36597" g_stop="36699" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36700" i_stop="37711" i_length="1012">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37712" g_stop="38300" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="692" r_length="589" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E542943" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36597" e_stop="36699"/>
          <exon e_start="37712" e_stop="38300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAATATATTGTTCGAATGGAGAGAGCCGATAAAAAACTTCATTAAAGCTACTTCGTTTGGCTCTCATTCTCTATCTATCATCGGCCGGCAAGTTTATACAGTAAGATTTCGTTTCTCTTTTCTGTTCAATGATCAATCACACTGTTTATTGTTTCGTTGGCTGAAAAATTTGGTTCGGTTTCTATCATTGAATGATCTCCAGAAGTGATTTTGTAATTCGTATGAACCGAATTGGATTTTGCATTGTTTAGCATTTGTAGAAGTATGAATTATTATTAGTTTTTGGATTGGTTGCTTTTTGATGTTTAAATTTCAAGCTGAGAATGTTCATCTGGATGTTATATTCGTTGATTGATTTTGTTTTGTGTGAGTGCATTGTTGTGTTAGTTGTAATTTTTGGTGTGGAAAGTGATGGAATGAAATGCCTGATTTTAATTTGTGACCTAGACGTTTAGTATTGTTTCATTTCATGAATATTGTTTAGGAGTTCGGCTCTTAAATCACAGTGATTTTCTTCTCTTTTTTTTTCGTTCATTGGAATAGACTGAGTTATAGTGTGTCAGCATCTTTTCAGGGGTGATAGTTGTATGCTTAATGTAATCTTCATTGATTTGAGGAAGAATATCAAATTTTGTTAATGTGCTTTCATGCTGCATCTGAATAGTTCTAAACTTTGGCATTACTAACGAGATTCGTTTGGCCGTGGATGATTAGAGAAGTGGATTAGTTTGTTTCAGTTGTAAATCATTTGTTCAGACCAAAGGATTTTACTTACACACGTGTATGGCAGTGTAAATACTGTATAGACTAGTTCTTTGATCGCTTATGTTAGTTAGATCTAAACAACCAGTTAGTAGGAGTTCTCAATTTTACTTATCAAAAAGTAGTATTTCTCCATTTTTACTATTGTTATTAGTTGCTTTTCTCCTGTCACAACTGTTGGTTCTCTGTACATTCTGTTATCCGTGAAATGTTGGATTCTCTTGTTGTTATGCCATCCAATCTCTGCCATTTTCCTTTATTTTGCGGTTTCTGCTATTCTACAAATTGTTAAAAAGCCTTTGATTAATAAGTGATGTTCTCAATATGGTTGCTTCTTTACTTCTTATCAGCGGTTCTTATTTCATCTTATACTGCAAGGATGAAGATGGAGGCACCTCCTTCGACAATCTTGTTTACTGATGATGATAGCAAGAACCTGGAGCAATTGCTTGATGTCTTTGGATCTGTTGTCTCTCTCGATGACATCGCTGCAGCTTATTGTAAAGCAGGTCGGGATCCAATTATTGCAGGTGATATACTTGGAGATCAGAAACCTAGCAGCTCCGGAACTACTAACTCTGAGATGGAAGAAAACATAGAGGATTCCGTGACTCTGACTTCTGAATTTGAGGAAGTAGGGGACTCTATGATATCGACATCTGCATCTGTATCTGAGATTGATGCCAAGAGAGTTGGTCCCAGGTCATCAAAGCAAAAAAAGTTATCAGTGTCTATGGGGACTGTCTCAAGCATGATCCCAAAAGACTATCTGACGAATAGGCCACTAATTACAGAAACTTCTACGAGAATCAAGCCACTGAAATTAAGCGCAGATGATTTCTTAACCCCAGAGCTAAGGGAGGAGAAAGCTCCATTAGGTGCTGCAGCTATGAGTGAAACCCTGCCCAGCAGTGTAGAGGAGTTCCTCTTCAACATGCT</genome_strand>
        <mrna_strand>GAACAATATATTGTTCGAATGGAGAGAGCCGATAAAAAACTTCATTAAAGCTACTTCGTTTGGCTCTCATTCTCTATCTATCATCGGCCGGCAAGTTTATACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTTCTTATTTCATCTTATACTGCAAGGATGAAGATGGAGGCACCTCCTTCGACAATCTTGTTTACTGATGATGATAGCAAGAACCTGGAGCAATTGCTTGATGTCTTTGGATCTGTTGTCTCTCTCGATGACATCGCTGCAGCTTATTGTAAAGCAGGTCGGGATCCAATTATTGCAGGTGATATACTTGGAGATCAGAAACCTAGCAGCTCCGGAACTACTAACTCTGAGATGGAAGAAAACATAGAGGATTCCGTGACTCTGACTTCTGAATTTGAGGAAGTAGGGGACTCTATGATATCGACATCTGCATCTGTATCTGAGATTGATGCCAAGAGAGTTGGTCCCAGGTCATCAAAGCAAAAAAAGTTATCAGTGTCTATGGGGACTGTCTCAAGCATGATCCCAAAAGACTATCTGACGAATAGGCCACTAATTACAGAAACTTCTACGAGAATCAAGCCACTGAAATTAAGCGCAGATGATTTCTTAACCCCAGAGCTAAGGGANGAGAAAGCTCCATTAGGTGCTGCAGCTATGAGTGAAACCCTGCCCAGCAGTGTAGAAGAGTTCCTCTTCAACATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E303035" ref_strand="+" ref_description="SGN-E303035 [cLEW-26-M20]">
      <seq>aacaatatattgttcgaatggagagagccgataaaaaacttcattaaagctacttcgtttggctctcattctctatctatcatcggccggcaagtttatacacggttcttatttcatcttatactgcaaggatgaagatggaggcacctccttcgacaatcttgtttactgatgatgatagcaagaacctggagcaattgcttgatgtctttggatctgttgtctctctcgatgacatcgctgcagcttattgtaaagcaggtcgggatccaattattgcaggtgatatacttggagatcagaaacctagcagctccggaactactaactctgagatggaagaaaacatagaggattccgtgactctgacttctgaatttgaggaagtaggggactctatgatatcgacatctgcatctgtatctgagattgatgccaagagagttggtcccaggtcatcaaagcaaaaaaagttatcagtgtctatggggactgtctcaagcatgatcccaaaagactatctgacgaataggccactaattacagaaacttctacgagaatcaagccactgaaattaagcgcagatgatttcttaaccccagagctaagggaggagaaagctccattaggtgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="36298" stop="38546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36598" g_stop="36699" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36700" i_stop="37711" i_length="1012">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37712" g_stop="38246" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="637" r_length="535" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E303035" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36598" e_stop="36699"/>
          <exon e_start="37712" e_stop="38246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATATATTGTTCGAATGGAGAGAGCCGATAAAAAACTTCATTAAAGCTACTTCGTTTGGCTCTCATTCTCTATCTATCATCGGCCGGCAAGTTTATACAGTAAGATTTCGTTTCTCTTTTCTGTTCAATGATCAATCACACTGTTTATTGTTTCGTTGGCTGAAAAATTTGGTTCGGTTTCTATCATTGAATGATCTCCAGAAGTGATTTTGTAATTCGTATGAACCGAATTGGATTTTGCATTGTTTAGCATTTGTAGAAGTATGAATTATTATTAGTTTTTGGATTGGTTGCTTTTTGATGTTTAAATTTCAAGCTGAGAATGTTCATCTGGATGTTATATTCGTTGATTGATTTTGTTTTGTGTGAGTGCATTGTTGTGTTAGTTGTAATTTTTGGTGTGGAAAGTGATGGAATGAAATGCCTGATTTTAATTTGTGACCTAGACGTTTAGTATTGTTTCATTTCATGAATATTGTTTAGGAGTTCGGCTCTTAAATCACAGTGATTTTCTTCTCTTTTTTTTTCGTTCATTGGAATAGACTGAGTTATAGTGTGTCAGCATCTTTTCAGGGGTGATAGTTGTATGCTTAATGTAATCTTCATTGATTTGAGGAAGAATATCAAATTTTGTTAATGTGCTTTCATGCTGCATCTGAATAGTTCTAAACTTTGGCATTACTAACGAGATTCGTTTGGCCGTGGATGATTAGAGAAGTGGATTAGTTTGTTTCAGTTGTAAATCATTTGTTCAGACCAAAGGATTTTACTTACACACGTGTATGGCAGTGTAAATACTGTATAGACTAGTTCTTTGATCGCTTATGTTAGTTAGATCTAAACAACCAGTTAGTAGGAGTTCTCAATTTTACTTATCAAAAAGTAGTATTTCTCCATTTTTACTATTGTTATTAGTTGCTTTTCTCCTGTCACAACTGTTGGTTCTCTGTACATTCTGTTATCCGTGAAATGTTGGATTCTCTTGTTGTTATGCCATCCAATCTCTGCCATTTTCCTTTATTTTGCGGTTTCTGCTATTCTACAAATTGTTAAAAAGCCTTTGATTAATAAGTGATGTTCTCAATATGGTTGCTTCTTTACTTCTTATCAGCGGTTCTTATTTCATCTTATACTGCAAGGATGAAGATGGAGGCACCTCCTTCGACAATCTTGTTTACTGATGATGATAGCAAGAACCTGGAGCAATTGCTTGATGTCTTTGGATCTGTTGTCTCTCTCGATGACATCGCTGCAGCTTATTGTAAAGCAGGTCGGGATCCAATTATTGCAGGTGATATACTTGGAGATCAGAAACCTAGCAGCTCCGGAACTACTAACTCTGAGATGGAAGAAAACATAGAGGATTCCGTGACTCTGACTTCTGAATTTGAGGAAGTAGGGGACTCTATGATATCGACATCTGCATCTGTATCTGAGATTGATGCCAAGAGAGTTGGTCCCAGGTCATCAAAGCAAAAAAAGTTATCAGTGTCTATGGGGACTGTCTCAAGCATGATCCCAAAAGACTATCTGACGAATAGGCCACTAATTACAGAAACTTCTACGAGAATCAAGCCACTGAAATTAAGCGCAGATGATTTCTTAACCCCAGAGCTAAGGGAGGAGAAAGCTCCATTAGGTGCTGC</genome_strand>
        <mrna_strand>AACAATATATTGTTCGAATGGAGAGAGCCGATAAAAAACTTCATTAAAGCTACTTCGTTTGGCTCTCATTCTCTATCTATCATCGGCCGGCAAGTTTATACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTTCTTATTTCATCTTATACTGCAAGGATGAAGATGGAGGCACCTCCTTCGACAATCTTGTTTACTGATGATGATAGCAAGAACCTGGAGCAATTGCTTGATGTCTTTGGATCTGTTGTCTCTCTCGATGACATCGCTGCAGCTTATTGTAAAGCAGGTCGGGATCCAATTATTGCAGGTGATATACTTGGAGATCAGAAACCTAGCAGCTCCGGAACTACTAACTCTGAGATGGAAGAAAACATAGAGGATTCCGTGACTCTGACTTCTGAATTTGAGGAAGTAGGGGACTCTATGATATCGACATCTGCATCTGTATCTGAGATTGATGCCAAGAGAGTTGGTCCCAGGTCATCAAAGCAAAAAAAGTTATCAGTGTCTATGGGGACTGTCTCAAGCATGATCCCAAAAGACTATCTGACGAATAGGCCACTAATTACAGAAACTTCTACGAGAATCAAGCCACTGAAATTAAGCGCAGATGATTTCTTAACCCCAGAGCTAAGGGAGGAGAAAGCTCCATTAGGTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E331725" ref_strand="+" ref_description="SGN-E331725 [cTOD-7-H4]">
      <seq>ttgtctctctcgatgacatcgctgcagcttattgtaaagcaggtcgggagccaattatggcaggtgatatacttggagatcagaaacctagcagctccggaactactaactctgagatggaagaaaacatagaggattccgtgactctgacttctgaatttgaggaagtaggggactctatgatatcgacatctgcatctgtatctgagattgatgccaagagagttggtcccaggtcatcaaagcaaaaaaagttatcagtgtctatggggactgtctcaagcatgatcccaaaagactatctgacgaataggccactaattacagaaacttctacgagaatcaagccactgaaattaagcgcagatgatttcttaaccccagagctaagggaggagaaagctccattaggtgctgcagctatgagtgaaaccctgcccagcagtgtagaggagttcctcttcaacatgctgggaagcggattttctcttgacaggagtgtaattggagatgttgttggtcaatgcagctacgatctgaacaagagtatggataagctgctagatatgtccgcatcaactttgggaaagagcgatgatattataaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="37529" stop="39966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37829" g_stop="38347" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38348" i_stop="38738" i_length="391">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38739" g_stop="38764" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="545" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38765" i_stop="39601" i_length="837">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39602" g_stop="39666" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="610" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E331725" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37829" e_stop="38347"/>
          <exon e_start="38739" e_stop="38764"/>
          <exon e_start="39602" e_stop="39666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCTCTCTCGATGACATCGCTGCAGCTTATTGTAAAGCAGGTCGGGATCCAATTATTGCAGGTGATATACTTGGAGATCAGAAACCTAGCAGCTCCGGAACTACTAACTCTGAGATGGAAGAAAACATAGAGGATTCCGTGACTCTGACTTCTGAATTTGAGGAAGTAGGGGACTCTATGATATCGACATCTGCATCTGTATCTGAGATTGATGCCAAGAGAGTTGGTCCCAGGTCATCAAAGCAAAAAAAGTTATCAGTGTCTATGGGGACTGTCTCAAGCATGATCCCAAAAGACTATCTGACGAATAGGCCACTAATTACAGAAACTTCTACGAGAATCAAGCCACTGAAATTAAGCGCAGATGATTTCTTAACCCCAGAGCTAAGGGAGGAGAAAGCTCCATTAGGTGCTGCAGCTATGAGTGAAACCCTGCCCAGCAGTGTAGAGGAGTTCCTCTTCAACATGCTGGGAAGCGGATTTTCTCTTGACAGGAGTGTAATTGGAGATGTTGTTGGTGAGCACTTTACCTATGTCTACACTTAGTGTTTGTAAGATTATTTGATAAGTAGTGCTGCCACATGGAGTAATTCTACTTATACTTCCAATGACCTGAACTTGTGTCATTTCTTTCTTCACTTCTTTTCATTGATCTTCTAATGAAACTTGCAAAAGTTGGTTAAATGTTTCTTTATAGTCTGTTTTGAGACTTGATTTGTTAAGTAGAATGCAACTTGAGGATGGTCCACTTGTTCAGTTTGTCTCAGATATCTTTAAATTCTGTTCCCTTTTTTCTTCCTTATAACTGCATTGTAATTCCTATGAGCTTATAACTGCATTCTAATTCCTAGGAGCTGTCACAACTTTTGGATAATCTCCTTCCTAATTTGGTATTGTTGGATATACAGGTCAATGCAGCTACGATCTGAACAAGGTTAGTGATATCAACTCAACCACTTTGTATACTTTATATGTGTTTTTCGAGGCATCAAATGCTAATATTATATTTGGCTCAATTTTATGTTTACATTCAGCATATGCATGTTTGCACTTAACTCTTATGCTGTTACTCCGTAATTGGCACCACATTGTTATATGCTAAGCACATATGTGAAAGTTGCTCTTCTAAGCACCTGCAAATACCATTTAACCTGCTTATTCTCCGCCCTCCTTTTATTATTACCTATGAAATCTTGAAAGTAAGTCCTCAAAACGCTTTTCTAGGTCCTTCTCAAAGTCAATCCCGTTGCTGGTTTGGTTTTTGTGGCTTAAGTTTAAGTAGTTTTGATGTATGTGGTTTGAAGTCCACATTTAACTAGAAAATAAATTATGCTCCATTCTACTTATCAGAATAGCTATTAAGCCTCTATCACAGTTAAAGTAATTACCTCATGTACCTAAATTTAGCTTGTGGATTTAGGAACCAATGAATGAATTTCTTGCTAACTGTGGTTAACTTTCATGGCGAGAAACCTCAATGCATGTGTGGGATCATACATAAATGCCAGGAGGATGAGGCCAGGTTGCAGAAGCTTAGTTCTCATACTAAGCAGAAAAGACAATGCTCGGTTATTGCTGTTTGATCTTCTGATTCCGAATATATCAGCCTGATAACAATTTTGTAGTTCCTGCTTGGGTGCTTCTATCTTTTCGTTTCAGAATTTTTGCATGCACACTAGACATAGATTGGCTTACTTCTCTACAGAGATTTATATATCGCTCTAATCTTGCATTTTCATTATATTACACCCCCTTTCCGCTGAATATGCAGAGTATGGATAAGCTGCTAGATATGTCCGCATCAACTTTGGGAAAGAGCGATGATATTATAAATAT</genome_strand>
        <mrna_strand>TTGTCTCTCTCGATGACATCGCTGCAGCTTATTGTAAAGCAGGTCGGGAGCCAATTATGGCAGGTGATATACTTGGAGATCAGAAACCTAGCAGCTCCGGAACTACTAACTCTGAGATGGAAGAAAACATAGAGGATTCCGTGACTCTGACTTCTGAATTTGAGGAAGTAGGGGACTCTATGATATCGACATCTGCATCTGTATCTGAGATTGATGCCAAGAGAGTTGGTCCCAGGTCATCAAAGCAAAAAAAGTTATCAGTGTCTATGGGGACTGTCTCAAGCATGATCCCAAAAGACTATCTGACGAATAGGCCACTAATTACAGAAACTTCTACGAGAATCAAGCCACTGAAATTAAGCGCAGATGATTTCTTAACCCCAGAGCTAAGGGAGGAGAAAGCTCCATTAGGTGCTGCAGCTATGAGTGAAACCCTGCCCAGCAGTGTAGAGGAGTTCCTCTTCAACATGCTGGGAAGCGGATTTTCTCTTGACAGGAGTGTAATTGGAGATGTTGTTG.......................................................................................................................................................................................................................................................................................................................................................................................................GTCAATGCAGCTACGATCTGAACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGGATAAGCTGCTAGATATGTCCGCATCAACTTTGGGAAAGAGCGATGATATTATAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E315628" ref_strand="+" ref_description="SGN-E315628 [cTOA-22-J7]">
      <seq>tgactctgacttctgaatttgaggaagtaggggactctatgatatcgacatctgcatctgtatctgagattgatgccaagagagttggtcccaggtcatcaaagcaaaaaaagttatcagtgtctatggggactgtctcaagcatgatcccaaaagactatctgacgaataggccactaattacagaaacttctacgagaatcaagccactgaaattaagcgcagatgatttcttaaccccagagctaagggaggagaaagctccattaggtgctgcagctatgagtgaaaccctgcccagcagtgtagaggagttcctcttcaacatgctgggaagcggattttctcttgacaggagtgtaattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="37670" stop="38636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37970" g_stop="38336" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E315628" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37970" e_stop="38336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTCTGACTTCTGAATTTGAGGAAGTAGGGGACTCTATGATATCGACATCTGCATCTGTATCTGAGATTGATGCCAAGAGAGTTGGTCCCAGGTCATCAAAGCAAAAAAAGTTATCAGTGTCTATGGGGACTGTCTCAAGCATGATCCCAAAAGACTATCTGACGAATAGGCCACTAATTACAGAAACTTCTACGAGAATCAAGCCACTGAAATTAAGCGCAGATGATTTCTTAACCCCAGAGCTAAGGGAGGAGAAAGCTCCATTAGGTGCTGCAGCTATGAGTGAAACCCTGCCCAGCAGTGTAGAGGAGTTCCTCTTCAACATGCTGGGAAGCGGATTTTCTCTTGACAGGAGTGTAATTGG</genome_strand>
        <mrna_strand>TGACTCTGACTTCTGAATTTGAGGAAGTAGGGGACTCTATGATATCGACATCTGCATCTGTATCTGAGATTGATGCCAAGAGAGTTGGTCCCAGGTCATCAAAGCAAAAAAAGTTATCAGTGTCTATGGGGACTGTCTCAAGCATGATCCCAAAAGACTATCTGACGAATAGGCCACTAATTACAGAAACTTCTACGAGAATCAAGCCACTGAAATTAAGCGCAGATGATTTCTTAACCCCAGAGCTAAGGGAGGAGAAAGCTCCATTAGGTGCTGCAGCTATGAGTGAAACCCTGCCCAGCAGTGTAGAGGAGTTCCTCTTCAACATGCTGGGAAGCGGATTTTCTCTTGACAGGAGTGTAATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E542942" ref_strand="-" ref_description="SGN-E542942 [TUS-64-I2]">
      <seq>tgaaaccagnttgcagttccagcaaagaaattgtgacactcgaccttcacgatttggagccaaaggatgcagtgcgcttactcaaacttcagttgacttctctttgtggattctcgtctattcaatatctcaaaatcttagttgggatcactgctgaagaagctaaaggtccccggaagcgtctggtactgaaatttttggagagggattccataccatggacggaggaagaaaatggcacagtgcttgtgataagagtggatgtgatagatccgcggaaaatgacttttgctaaaaaatcaactgccagagtccgataaatacatcactgaatagatcattgttctaaagcatgaattttgtatcaacttggatcttgtgaaatgctttgatgcttctgcattttttataaccacaaggaacaaccttggccttgctaccaaaaagacttgtatttgattctttaatttctcttcttaattctcaagccggtgagcaagttttgcttaggcaccgatttacttggtaaagactaatagcaaattgatttcaganagtacattatatgaaacatgcaatgctttgacttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="+" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="43102" stop="46238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43393" g_stop="43510" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43511" i_stop="43923" i_length="413">
            <donor d_prob="0.745" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43924" g_stop="43948" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="141" r_length="24" r_score="0.640"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43949" i_stop="44008" i_length="60">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44009" g_stop="44024" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="159" r_length="18" r_score="0.312"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44025" i_stop="44161" i_length="137">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.883" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44162" g_stop="44177" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="174" r_length="15" r_score="0.688"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44178" i_stop="44370" i_length="193">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.577" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44371" g_stop="44380" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="182" r_length="8" r_score="0.600"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44381" i_stop="45531" i_length="1151">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45532" g_stop="45938" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="590" r_length="408" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="591" polyA_stop="602"/>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="+" ref_id="SGN-E542942" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542942" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43393" e_stop="43510"/>
          <exon e_start="43924" e_stop="43948"/>
          <exon e_start="44009" e_stop="44024"/>
          <exon e_start="44162" e_stop="44177"/>
          <exon e_start="44371" e_stop="44380"/>
          <exon e_start="45532" e_stop="45938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAACCTTAGTTGCAGTTCCAGCAAAGAAATTGTGACACTCGACCTTCACGATTTGGAGCCAAAGGATGCAGTGCGCTTACTCAAACTTCAGTTGACTTCTCTTTGTGGATTCTCGTGTAGGTTATCGTCATTATAGGACTTCGTCAATTGTTTTTATATAAAAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTGGTGCTGATATGTTTGAATAATTTGGTCTATCTGCTGCTGTTTTTCTCACGGGTATATGTTACTGACAATTGGAATATTGTAATCTTCAATTTTTTGGGGCAACACTGTAAATATTACTATTGACAAACCAAGTCAGCATAGAATACAAGCCTAAGAGCACCTAGCCATTTCCTTCACCTCTTATGAAGGTAAAGATGATCATAGGCCTCAAAAACGAGTCTAATTACATGTATATTCTCTCTTTAAGCCCCCTAGATCTATCCAACTTCTTCTGCATATAAGGTAGATTTGATCTATCTATTAACTCCTTACTCTGTGTAATTGCCCTCTCTATATCTACAGTTTG--TCCCTTGAACAGGTTCCAGTTCTGGGCCCTCCAAGTATAAATGACCATTGCCCCCCACACAGCAGCTACTATCTTCTTCTGGATTAACTTCTAATGCTTCCTTCTATTTCCTCCCTTACATTTTTAAACCAGTCACACTCAAATAACAGATGCTGAGATGTCTCCATATCAGCAGATCCACAAAGACAGCAGTGCAGGTCATCCACCTGAATGTTTAGCTGAAGAAGTCTCCTTTTCTGATAGCTAACAATAAACTTGTGTTTTGGTTGTGCAACATCGTTCATCTCTGTTCTGCAGCATTTTCCTTTTTTTTCCTACAACATCATGTAGCTTCTAGAGATTGAGTACCTTCCTCCAGGTGTAAGATTATATCCCTGGGTAAACCAAGCCCAAACTGTGGAATCATCCTTCATTTCACCCTTAGTGAGCCCTTATCCACCACTAATTGCCATAACAGTTCCCTACTTATGCAAGATTCCAGATTCTGCTGCCCTTGATATTAAAGCCTTCATTACCCTTAGGTACGCAAACTGTATCCCAAGCTACAAGGCTCACTTTCCTCTTTTCTTCATTGCCCCCATAGGAACATTCTACATCTTCTATCAACCTTTTTCAACACACTCTGGGGGCTGTATTAACACCATACCCCAGAAGTTATGAATGGAGAACAACACATCAACAATCACTTGTAATCTCCCAGCGTAGGACAATTGCTTAGAATACCCTGTACTAATTTTATCTGATATCTTATTAATCAGAGTGGCAGGATCTACAGAGTACTTTTGAAGAAAATGGTTGTTTTTTATTCTTCCTGCCTCTGCCATGTTATACACGTATGCCTCTGCCATTGTTCAGAAAATTTGGCCTCAAGTCTAAACAATTCAGTCCAGATTGGTAACTCAAGAAGATAATAGACCTTAAATCTGACATATGAGAACAATTAAGCTGTGTATGCCAGTTTATCTTTTCACCTCTTAAAATATGCAAGTGGAAATTCCATCTGCATCTTTCATAAATGTGAAAACCACAATGTTCTGACGTCGAAACACTGCTGAATGGACAGTATTAACTATACAGTCAAGTACCTTCTAGTACTCTACTATAGGTGTCAGTTTATGGTCCTTGTAACCAATTACAGTAGTATAAGTTACGAAAAATTAATGTGATATCCAAACTGTTTCTTTCTTCTAGGAAATAATATATAATCTATTTCAAAATGTACATATAAGAAACAATTGTGGTTTAGAGAATGTTTTAGTGTCGACTCTTCTCATTTTCATTATTTTGATCGCGAATATTATCTGTATAGGACTTTGGATAGGTTAGGGTTGAGACTTTCTCCCATGCTGTAGGATTAACAAAAAATTCATTATGAACTTATTCGATCTCTGTTGTTTCATATCCCAGATAGTATGTCCAATTGAATTATTTTTCTCCATTCTATGTCTATTACATCTCATTTCTTTAGCTACTTGAATCGACATTGGACAAATAGAAGTATGAGACAGATATTTGTAAACAGGTACTGAAATTTTTGGAGAGGGATTCCATACCATGGACGGAGGAAGAAAATGGCACAGTGCTTGTGATAAGAGTGGATGTGATAGATCCGCGGAAAATGACTTTTGCTAAAAAATCAACTGCCAGAGTCCGATAAATACATCACTGAATAGATCATTGTTCTAAAGCATGAATTTTGTATCAACTTGGATCTTGTGAAATGCTTTGATGCTTCTGCATTTTTTATAACCACAAGGAACAACCTTGGCCTTGCTACCAAAAAGACTTGTATTTGATTCTTTAATTTCTCTTCTTAATTCTCAAGCCGGTGAGCAAGTTTTGCTTAGGCACCGATTTACTTGGTAAAGACTAATAGCAAATTGATTTCAGA-AGTACATTATATGAAACATGCAATGCTTTGACTTA</genome_strand>
        <mrna_strand>TGAAACC-AGNTTGCAGTTCCAGCAAAGAAATTGTGACACTCGACCTTCACGATTTGGAGCCAAAGGATGCAGTGCGCTTACTCAAACTTCAGTTGACTTCTCTTTGTGGATTCTCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................CTATTCAATATC-TCAAAATCTTAG............................................................TTGGGATCACTGCTGAAG.........................................................................................................................................AAGCT-AAAGGTCCCC.................................................................................................................................................................................................G-G-AAGCGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGTACTGAAATTTTTGGAGAGGGATTCCATACCATGGACGGAGGAAGAAAATGGCACAGTGCTTGTGATAAGAGTGGATGTGATAGATCCGCGGAAAATGACTTTTGCTAAAAAATCAACTGCCAGAGTCCGATAAATACATCACTGAATAGATCATTGTTCTAAAGCATGAATTTTGTATCAACTTGGATCTTGTGAAATGCTTTGATGCTTCTGCATTTTTTATAACCACAAGGAACAACCTTGGCCTTGCTACCAAAAAGACTTGTATTTGATTCTTTAATTTCTCTTCTTAATTCTCAAGCCGGTGAGCAAGTTTTGCTTAGGCACCGATTTACTTGGTAAAGACTAATAGCAAATTGATTTCAGANAGTACATTATATGAAACATGCAATGCTTTGACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E325364" ref_strand="+" ref_description="SGN-E325364 [cTOC-1-E3]">
      <seq>cattgttgaggatatcgcagttgataagtctatccatggcttaattaactctcgatctttggtcttaaagagatatgtagctgatgttggcaagtcatggggagtgttgattgtttgtggaggaattttgccagtttttctatcagtgatatggcttctgatgattcgtcactttgtggctgcaatgccttggataactgtcgtcctctttaatggcctcatagtttcagtcacaatgttctactatctaaaagctggatggatagggaacgaccctatctcccccatcattggtgaacatgatccgtattatcatgtatctgcaagggaaataagtcatctacatgctgctgctgttatcatgactgctgtaatgattatttcggtcttgtcatccatcgctatagtgcgtcgtatacttatggctacttcagtcctgaaggtagctgctaaggtcattggagaagtacaagcattaataattttccccatcattccgtatgctatcctagcaatcttctacatgttttggttttcagctgctcttcatcttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="50324" stop="47962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50024" g_stop="49955" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49954" i_stop="49531" i_length="424">
            <donor d_prob="0.667" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49530" g_stop="49347" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="254" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49346" i_stop="48724" i_length="623">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48723" g_stop="48650" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="328" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48649" i_stop="48570" i_length="80">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48569" g_stop="48456" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="442" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48455" i_stop="48377" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48376" g_stop="48262" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="557" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E325364" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50024" e_stop="49955"/>
          <exon e_start="49530" e_stop="49347"/>
          <exon e_start="48723" e_stop="48650"/>
          <exon e_start="48569" e_stop="48456"/>
          <exon e_start="48376" e_stop="48262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGTTGAGGATATCGCAGTTGATAAGTCTATCCATGGCTTAATTAACTCTCGATCTTTGGTCTTAAAGGTTGAGTGACTTAACACTTCTCTTGTTTTGCTTGTAAAGTACGCAGATAGAATCTTTTCATCGGAACTTGCCGGGAGAAAATGAGACACTCAATAGTATAGTGTAGATTGCTCGTTTGATTGGCTGTAGATGACATTTTCTCTTGGACCTGCATCAGGATACATAACCACGTGTAAAAAAAATTGCTTTTCATACCCACAAATTCTGCGAAATCTTTAGTTCAAACGGTACAAGTGTAACTCATTTTCATAAATAACAAATGTTTCATTTGACTTGTGTGTCAATGGTCTAACGATGACTAAAACAAGAGAACACTGAAATGCTCAAGTAACACATATTATAACAATGTGCCTTGATTGTGTTCTCTATGGTATCACATTCTTTATTTAAGAGTTCAAAATTCACATTTGAGTTACATTTTCAGAGATATGTAGCTGATGTTGGCAAGTCATGGGGAGTGTTGATTGTTTGTGGAGGAATTTTGCCAGTTTTTCTATCAGTGATATGGCTTCTGATGATTCGTCACTTTGTGGCTGCAATGCCTTGGATAACTGTCGTCCTCTTTAATGGCCTCATAGTTTCAGTCACAATGTTCTACTATCTAAAAGGTAGGCACTGTTCCCTAGTGTTTTCCCTCTGTCGTTACGTAGTAATTGTAATTCATGTCAATTTTCAGTTCTATGTCCAAGTTGTGATTGAGATGTAGTACCCTCTGACAAACTTTATACTTTCTATTATTTGTTCTATGTCCAAAAGTCTCATAGCACTATTAGTACTTGTGATTCTGGATTTTTTTAATCTTCACACCCCCTTCCCTGGGTTTAAAGAAAACTACACGACTTCTGTACTAAGATGATTCATGGGAAACATATCTTCTTTCCTTTTATTTCCATTTTCCATTCTCCTTGGAGTTAGTCGAGGTGCGCAAAAGCTAGCCCAAACACCACATTTATCAAACAAAAATTAGTAAAAAGGCCGACAAGATGCCTATTGTTTAATGTATGCTGCACTCTTTTGCGCCCATTCACCAAGATAGATACTTTTCCTGATGTAATCCTTTCTTTCTTTTTGATAAGTTCAAGTCTTTCTGTCTTATGCAAAGATCTTTTTTTTTTCTACAGTTCGTGAAGATCTCACGTAGTCCTGCATTATATCTTATGTTTGTTGTGTAATTGAACATCATATATTTCCATTGAGTATACTAACAAAATTATTCTTCTTTCCTGTCCAGCTGGATGGATAGGGAACGACCCTATCTCCCCCATCATTGGTGAACATGATCCGTATTATCATGTATCTGCAAGGGTATGCTTGCCTTTTGTCAGTTTCATCATCCTCTATGTAATAGTTTGCTGTACCGTTAAATTAGATTATCTGCTTGGTAGGAAATAAGTCATCTCCATGCTGCTGCTGTTATCATGACTGCTGTAATGATTATTTCGGTCTTGTCATCCATCGCTATAGTGCGTCGTATACTTATGGCTACTTCAGTCCTGAAGGTAAGTCTATCATAAAGCTTCTTATCTCTAGATATATTTACTTAAAACCTGAGATTATGAATGATAATCTTAATTGCAGGTAGCTGCTAAGGTCATTGGAGAAGTACAAGCATTAATAATTTTCCCCATCATTCCGTATGCTATCCTAGCAATCTTCTACATGTTTTGGTTTTCAGCTGCTCTTCATCTTTTTA</genome_strand>
        <mrna_strand>CATTGTTGAGGATATCGCAGTTGATAAGTCTATCCATGGCTTAATTAACTCTCGATCTTTGGTCTTAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGATATGTAGCTGATGTTGGCAAGTCATGGGGAGTGTTGATTGTTTGTGGAGGAATTTTGCCAGTTTTTCTATCAGTGATATGGCTTCTGATGATTCGTCACTTTGTGGCTGCAATGCCTTGGATAACTGTCGTCCTCTTTAATGGCCTCATAGTTTCAGTCACAATGTTCTACTATCTAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGATGGATAGGGAACGACCCTATCTCCCCCATCATTGGTGAACATGATCCGTATTATCATGTATCTGCAAGG................................................................................GAAATAAGTCATCTACATGCTGCTGCTGTTATCATGACTGCTGTAATGATTATTTCGGTCTTGTCATCCATCGCTATAGTGCGTCGTATACTTATGGCTACTTCAGTCCTGAAG...............................................................................GTAGCTGCTAAGGTCATTGGAGAAGTACAAGCATTAATAATTTTCCCCATCATTCCGTATGCTATCCTAGCAATCTTCTACATGTTTTGGTTTTCAGCTGCTCTTCATCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E550820" ref_strand="+" ref_description="SGN-E550820 [TUS-50-N4]">
      <seq>tgaaacttcgtccttacgtttttcatctattgacctcatggctgtggaacaaaattttgttgatgaagatatgttcacttttgtatctgaagaagatgtttcccttgagaaggggagtgcaattccagttccagttccaacatcaagttctgacaatataacaggaggttatgattgcaatatttgtctcgactcggcacacgatcctgttgtcaccctctgcggacacctctactgctggccttgcatttacaagtggcttcaagttgatagatctactccgggatcagaagagaaatgtaaatgtccagtctgtaaggctcacatctcaaactcatcgctggtacctctttatggccgtggaacatcatccccagaatctgaatccaagaagtctcaacgggatgttgtagtaccacgcaggcctcaagccatcgagatagcaactctcgttaattcattgtctccagcttctcacgtgagtcagcaacttcatcacagacgatccgtcccctctgcctttggtagctatgctgctttggctccatccagctttgggggtacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="65783" stop="63269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65483" g_stop="65452" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65451" i_stop="64104" i_length="1348">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64103" g_stop="63569" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="567" r_length="535" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E550820" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65483" e_stop="65452"/>
          <exon e_start="64103" e_stop="63569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAACTTCGTCCTTACGTTTTTCATCTATTGGTACGTTTTTCATCTTATTTTTTGTTTTTGTGTTTATGTTTTTGAGATCTTTGTTTTCGCATATTATTGATTGAATTATTTGTTATGATTTCTGTTCATTGTAATCTATGTTTGTTTTGAGTTTTGTGTTGATTGAGAAAATGGAAAATTTTCAATTTGAGGTTAAGATTGTTAATTTTGGATTTTGACATTGTGAAGGAATTTGGTCAACTTACTTTAATTTTTGGTTAATTTTTTTTTTTGGTTATGGGTAGGAGTAGTTAGTGTTGCTATGTTGTGGGATCGGGGATGAATTACATGTTTTAATCGGGTTTGAGCCAAAGAAATGAAAAAAATTACTATGAATTAGTCGGGTTCTAATGCGGGTATTGTTGGATCAGGGTGGAAACAAAAACAGAAAGAATTAATGGTGTTGATTAGTTTTGTGTAAAATAAAATCTTTATATTCATTGAACTGTTTGTGTAAGTGAGTTCTTTTGATGATTTTAGTTTTGTGCAATGCCTATTTTGTTTCAGAAATTGAAGAATTTTATTTGTTTCGTTTCAAATGCATGATAGGGAAAGTTTTGCGTGCATTTATGAAATGGAGAAATGGAAAGAGGAATTGAGGAGATAATTTTGTTATATGTCAAACTTGTGCCATCAAAATTTTGTGTTTTTATCTCCTATCGGCATAAGAATATTAACCTTTCCGACTGCGTTTCTATGTGTTTTCGTCTTTTAGACTTGAAATGTAGGCTTGGAGATGTAGACTGGAGTTTGTCAATCAAAACGAATTGAACTGCAGTTTTAGCCACACTCTAGCTTTGTGATCTAATTTTTCAGCCCCGCCACTTCTGGTTTGAAGAAGACAGGTTCTAGCGAATGGATGCAATTATATGGTTTAGTATTTAAAGCGTGTTTACTTGGGAGTTGGGACTCTAATTTTTCCAACCCTTGCTCCCTAATCACACGCATACTCCCTATAGGCTAAGTTCTAAAAGAAAAGGAAAACGAAAAAAAGGAAGAACTGGAAGATGCTTTGTTAAGTTGTCTTCTTCATTTTGCTTTCCAAATGGTCAACTCATCAGAAATGGACCAACTGTATATAATAAGTCTTTTGGATATCCGATTTCATGCTTCGATAGAAGTTGTTGACATTCAATCATGTTGTTGTGTTGATGAATGTGTATCTTTTCATTCAAATGGTTCATTTCTTGTTTTAAGCTATTTTATAGATCCTGTCCTTGTAGATTTTCAGGTTAAGTTTGTATCGATGGTCATTTACTTCCTATGGATTTATTTGTGGAGTGTCTGAATGAACTTTATAGGGTGACTGATTTGTTTGCAAATTTTTCCGTTTTAACAGACCTCATGGCTGTGGAACAAAATTTTGTTGATGAAGATATGTTCACTTTTGTATCTGAAGAAGATGTTTCCCTTGAGAAGGGGAGTGCAATTCCAGTTCCAGTTCCAACATCAAGTTCTGACAATATAACAGGAGGTTATGATTGCAATATTTGTCTCGACTCGGCACACGATCCTGTTGTCACCCTCTGCGGACACCTCTACTGCTGGCCTTGCATTTACAAGTGGCTTCAAGTTGATAGATCTACTCCGGGATCAGAAGAGAAATGTAAATGTCCAGTCTGTAAGGCTCACATCTCAAACTCATCGCTGGTACCTCTTTATGGCCGTGGAACATCATCCCCAGAATCTGAATCCAAGAAGTCTCAACGGGATGTTGTAGTACCACGCAGGCCTCAAGCCATCGAGATAGCAACTCTCGTTAATTCATTGTCTCCAGCTTCTCACGTGAGTCAGCAACTTCATCACAGACGATCCGTCCCCTCTGCCTTTGGTAGCTATGCTGCTTTGGCTCCATCCAGCTTTGGGGGTACTTC</genome_strand>
        <mrna_strand>TGAAACTTCGTCCTTACGTTTTTCATCTATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCATGGCTGTGGAACAAAATTTTGTTGATGAAGATATGTTCACTTTTGTATCTGAAGAAGATGTTTCCCTTGAGAAGGGGAGTGCAATTCCAGTTCCAGTTCCAACATCAAGTTCTGACAATATAACAGGAGGTTATGATTGCAATATTTGTCTCGACTCGGCACACGATCCTGTTGTCACCCTCTGCGGACACCTCTACTGCTGGCCTTGCATTTACAAGTGGCTTCAAGTTGATAGATCTACTCCGGGATCAGAAGAGAAATGTAAATGTCCAGTCTGTAAGGCTCACATCTCAAACTCATCGCTGGTACCTCTTTATGGCCGTGGAACATCATCCCCAGAATCTGAATCCAAGAAGTCTCAACGGGATGTTGTAGTACCACGCAGGCCTCAAGCCATCGAGATAGCAACTCTCGTTAATTCATTGTCTCCAGCTTCTCACGTGAGTCAGCAACTTCATCACAGACGATCCGTCCCCTCTGCCTTTGGTAGCTATGCTGCTTTGGCTCCATCCAGCTTTGGGGGTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E688527" ref_strand="+" ref_description="SGN-E688527 [t3_tus_50_n04]">
      <seq>tgaaacttcgtccttacgtttttcatctattgacctcatggctgtggaacaaaattttgttgatgaagatatgttcacttttgtatctgaagaagatgtttcccttgagaaggggagtgcaattccagttccagttccaacatcaagttctgacaatataacaggaggttatgattgcaatatttgtctcgactcggcacacgatcctgttgtcaccctctgcggacacctctactgctggccttgcatttacaagtggcttcaagttgatagatctactccgggatcagaagagaaatgtaaatgtccagtctgtaaggctcacatctcaaactcatcgctggtacctctttatggccgtggaacatcatccccagaatctgaatccaagaagtctcaacgggatgttgtagtaccacgcaggcctcaagccatcgagatagcaactctcgttaattcattgtctccagcttctcacgtgagtcagcaacttcatcacagacgatccgtcccctctgcctttggtagctatgctgctttggctccatccagctttgggggtacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="65783" stop="63269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65483" g_stop="65452" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65451" i_stop="64104" i_length="1348">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64103" g_stop="63569" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="567" r_length="535" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E688527" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65483" e_stop="65452"/>
          <exon e_start="64103" e_stop="63569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAACTTCGTCCTTACGTTTTTCATCTATTGGTACGTTTTTCATCTTATTTTTTGTTTTTGTGTTTATGTTTTTGAGATCTTTGTTTTCGCATATTATTGATTGAATTATTTGTTATGATTTCTGTTCATTGTAATCTATGTTTGTTTTGAGTTTTGTGTTGATTGAGAAAATGGAAAATTTTCAATTTGAGGTTAAGATTGTTAATTTTGGATTTTGACATTGTGAAGGAATTTGGTCAACTTACTTTAATTTTTGGTTAATTTTTTTTTTTGGTTATGGGTAGGAGTAGTTAGTGTTGCTATGTTGTGGGATCGGGGATGAATTACATGTTTTAATCGGGTTTGAGCCAAAGAAATGAAAAAAATTACTATGAATTAGTCGGGTTCTAATGCGGGTATTGTTGGATCAGGGTGGAAACAAAAACAGAAAGAATTAATGGTGTTGATTAGTTTTGTGTAAAATAAAATCTTTATATTCATTGAACTGTTTGTGTAAGTGAGTTCTTTTGATGATTTTAGTTTTGTGCAATGCCTATTTTGTTTCAGAAATTGAAGAATTTTATTTGTTTCGTTTCAAATGCATGATAGGGAAAGTTTTGCGTGCATTTATGAAATGGAGAAATGGAAAGAGGAATTGAGGAGATAATTTTGTTATATGTCAAACTTGTGCCATCAAAATTTTGTGTTTTTATCTCCTATCGGCATAAGAATATTAACCTTTCCGACTGCGTTTCTATGTGTTTTCGTCTTTTAGACTTGAAATGTAGGCTTGGAGATGTAGACTGGAGTTTGTCAATCAAAACGAATTGAACTGCAGTTTTAGCCACACTCTAGCTTTGTGATCTAATTTTTCAGCCCCGCCACTTCTGGTTTGAAGAAGACAGGTTCTAGCGAATGGATGCAATTATATGGTTTAGTATTTAAAGCGTGTTTACTTGGGAGTTGGGACTCTAATTTTTCCAACCCTTGCTCCCTAATCACACGCATACTCCCTATAGGCTAAGTTCTAAAAGAAAAGGAAAACGAAAAAAAGGAAGAACTGGAAGATGCTTTGTTAAGTTGTCTTCTTCATTTTGCTTTCCAAATGGTCAACTCATCAGAAATGGACCAACTGTATATAATAAGTCTTTTGGATATCCGATTTCATGCTTCGATAGAAGTTGTTGACATTCAATCATGTTGTTGTGTTGATGAATGTGTATCTTTTCATTCAAATGGTTCATTTCTTGTTTTAAGCTATTTTATAGATCCTGTCCTTGTAGATTTTCAGGTTAAGTTTGTATCGATGGTCATTTACTTCCTATGGATTTATTTGTGGAGTGTCTGAATGAACTTTATAGGGTGACTGATTTGTTTGCAAATTTTTCCGTTTTAACAGACCTCATGGCTGTGGAACAAAATTTTGTTGATGAAGATATGTTCACTTTTGTATCTGAAGAAGATGTTTCCCTTGAGAAGGGGAGTGCAATTCCAGTTCCAGTTCCAACATCAAGTTCTGACAATATAACAGGAGGTTATGATTGCAATATTTGTCTCGACTCGGCACACGATCCTGTTGTCACCCTCTGCGGACACCTCTACTGCTGGCCTTGCATTTACAAGTGGCTTCAAGTTGATAGATCTACTCCGGGATCAGAAGAGAAATGTAAATGTCCAGTCTGTAAGGCTCACATCTCAAACTCATCGCTGGTACCTCTTTATGGCCGTGGAACATCATCCCCAGAATCTGAATCCAAGAAGTCTCAACGGGATGTTGTAGTACCACGCAGGCCTCAAGCCATCGAGATAGCAACTCTCGTTAATTCATTGTCTCCAGCTTCTCACGTGAGTCAGCAACTTCATCACAGACGATCCGTCCCCTCTGCCTTTGGTAGCTATGCTGCTTTGGCTCCATCCAGCTTTGGGGGTACTTC</genome_strand>
        <mrna_strand>TGAAACTTCGTCCTTACGTTTTTCATCTATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCATGGCTGTGGAACAAAATTTTGTTGATGAAGATATGTTCACTTTTGTATCTGAAGAAGATGTTTCCCTTGAGAAGGGGAGTGCAATTCCAGTTCCAGTTCCAACATCAAGTTCTGACAATATAACAGGAGGTTATGATTGCAATATTTGTCTCGACTCGGCACACGATCCTGTTGTCACCCTCTGCGGACACCTCTACTGCTGGCCTTGCATTTACAAGTGGCTTCAAGTTGATAGATCTACTCCGGGATCAGAAGAGAAATGTAAATGTCCAGTCTGTAAGGCTCACATCTCAAACTCATCGCTGGTACCTCTTTATGGCCGTGGAACATCATCCCCAGAATCTGAATCCAAGAAGTCTCAACGGGATGTTGTAGTACCACGCAGGCCTCAAGCCATCGAGATAGCAACTCTCGTTAATTCATTGTCTCCAGCTTCTCACGTGAGTCAGCAACTTCATCACAGACGATCCGTCCCCTCTGCCTTTGGTAGCTATGCTGCTTTGGCTCCATCCAGCTTTGGGGGTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E550819" ref_strand="+" ref_description="SGN-E550819 [TUS-50-N3]">
      <seq>ttatcctcctccattcaatttttcatcttttttctcaccgtctctttaccttcgctttctgcaattcgccattgttgaaacttcgtccttacgtttttcatctattgacctcatggctgtggaacaaaattttgttgatgaagatatgttcacttttgtatctgaagaagatgtttcccttgagaaggggagtgcaattccagttccagttccaacatcaagttctgacaatataacaggaggttatgattgcaatatttgtctcgactcggcacacgatcctgttgtcaccctctgcggacacctctactgctggccttgcatttacaagtggcttcaagttgatagatctactccgggatcagaagagaaatgtaaatgtccagtctgtaaggctcacatctcaaactcatcgctggtacctctttatggccgtggaacatcatccccagaatctgaatccaagaagtctcaacgggatgttgtagtaccacgcaggcctcaagccatcgagatagcaactctcgttaattcattgtctccagcttctcacgtgagtcagcaacttcatcacagacgatccgtcccctctgcctttggtagctatgctgctttggctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="65858" stop="63290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65558" g_stop="65452" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65451" i_stop="64104" i_length="1348">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64103" g_stop="63590" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="621" r_length="514" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E550819" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65558" e_stop="65452"/>
          <exon e_start="64103" e_stop="63590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCCTCCTCCATTCAATTTTTCATCTTTTTTCTCACCGTCTCTTTACCTTCGCTTTCTGCAATTCGCCATTGTTGAAACTTCGTCCTTACGTTTTTCATCTATTGGTACGTTTTTCATCTTATTTTTTGTTTTTGTGTTTATGTTTTTGAGATCTTTGTTTTCGCATATTATTGATTGAATTATTTGTTATGATTTCTGTTCATTGTAATCTATGTTTGTTTTGAGTTTTGTGTTGATTGAGAAAATGGAAAATTTTCAATTTGAGGTTAAGATTGTTAATTTTGGATTTTGACATTGTGAAGGAATTTGGTCAACTTACTTTAATTTTTGGTTAATTTTTTTTTTTGGTTATGGGTAGGAGTAGTTAGTGTTGCTATGTTGTGGGATCGGGGATGAATTACATGTTTTAATCGGGTTTGAGCCAAAGAAATGAAAAAAATTACTATGAATTAGTCGGGTTCTAATGCGGGTATTGTTGGATCAGGGTGGAAACAAAAACAGAAAGAATTAATGGTGTTGATTAGTTTTGTGTAAAATAAAATCTTTATATTCATTGAACTGTTTGTGTAAGTGAGTTCTTTTGATGATTTTAGTTTTGTGCAATGCCTATTTTGTTTCAGAAATTGAAGAATTTTATTTGTTTCGTTTCAAATGCATGATAGGGAAAGTTTTGCGTGCATTTATGAAATGGAGAAATGGAAAGAGGAATTGAGGAGATAATTTTGTTATATGTCAAACTTGTGCCATCAAAATTTTGTGTTTTTATCTCCTATCGGCATAAGAATATTAACCTTTCCGACTGCGTTTCTATGTGTTTTCGTCTTTTAGACTTGAAATGTAGGCTTGGAGATGTAGACTGGAGTTTGTCAATCAAAACGAATTGAACTGCAGTTTTAGCCACACTCTAGCTTTGTGATCTAATTTTTCAGCCCCGCCACTTCTGGTTTGAAGAAGACAGGTTCTAGCGAATGGATGCAATTATATGGTTTAGTATTTAAAGCGTGTTTACTTGGGAGTTGGGACTCTAATTTTTCCAACCCTTGCTCCCTAATCACACGCATACTCCCTATAGGCTAAGTTCTAAAAGAAAAGGAAAACGAAAAAAAGGAAGAACTGGAAGATGCTTTGTTAAGTTGTCTTCTTCATTTTGCTTTCCAAATGGTCAACTCATCAGAAATGGACCAACTGTATATAATAAGTCTTTTGGATATCCGATTTCATGCTTCGATAGAAGTTGTTGACATTCAATCATGTTGTTGTGTTGATGAATGTGTATCTTTTCATTCAAATGGTTCATTTCTTGTTTTAAGCTATTTTATAGATCCTGTCCTTGTAGATTTTCAGGTTAAGTTTGTATCGATGGTCATTTACTTCCTATGGATTTATTTGTGGAGTGTCTGAATGAACTTTATAGGGTGACTGATTTGTTTGCAAATTTTTCCGTTTTAACAGACCTCATGGCTGTGGAACAAAATTTTGTTGATGAAGATATGTTCACTTTTGTATCTGAAGAAGATGTTTCCCTTGAGAAGGGGAGTGCAATTCCAGTTCCAGTTCCAACATCAAGTTCTGACAATATAACAGGAGGTTATGATTGCAATATTTGTCTCGACTCGGCACACGATCCTGTTGTCACCCTCTGCGGACACCTCTACTGCTGGCCTTGCATTTACAAGTGGCTTCAAGTTGATAGATCTACTCCGGGATCAGAAGAGAAATGTAAATGTCCAGTCTGTAAGGCTCACATCTCAAACTCATCGCTGGTACCTCTTTATGGCCGTGGAACATCATCCCCAGAATCTGAATCCAAGAAGTCTCAACGGGATGTTGTAGTACCACGCAGGCCTCAAGCCATCGAGATAGCAACTCTCGTTAATTCATTGTCTCCAGCTTCTCACGTGAGTCAGCAACTTCATCACAGACGATCCGTCCCCTCTGCCTTTGGTAGCTATGCTGCTTTGGCTCC</genome_strand>
        <mrna_strand>TTATCCTCCTCCATTCAATTTTTCATCTTTTTTCTCACCGTCTCTTTACCTTCGCTTTCTGCAATTCGCCATTGTTGAAACTTCGTCCTTACGTTTTTCATCTATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCATGGCTGTGGAACAAAATTTTGTTGATGAAGATATGTTCACTTTTGTATCTGAAGAAGATGTTTCCCTTGAGAAGGGGAGTGCAATTCCAGTTCCAGTTCCAACATCAAGTTCTGACAATATAACAGGAGGTTATGATTGCAATATTTGTCTCGACTCGGCACACGATCCTGTTGTCACCCTCTGCGGACACCTCTACTGCTGGCCTTGCATTTACAAGTGGCTTCAAGTTGATAGATCTACTCCGGGATCAGAAGAGAAATGTAAATGTCCAGTCTGTAAGGCTCACATCTCAAACTCATCGCTGGTACCTCTTTATGGCCGTGGAACATCATCCCCAGAATCTGAATCCAAGAAGTCTCAACGGGATGTTGTAGTACCACGCAGGCCTCAAGCCATCGAGATAGCAACTCTCGTTAATTCATTGTCTCCAGCTTCTCACGTGAGTCAGCAACTTCATCACAGACGATCCGTCCCCTCTGCCTTTGGTAGCTATGCTGCTTTGGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E688526" ref_strand="+" ref_description="SGN-E688526 [t3_tus_50_n03]">
      <seq>ttatcctcctccattcaatttttcatcttttttctcaccgtctctttaccttcgctttctgcaattcgccattgttgaaacttcgtccttacgtttttcatctattgacctcatggctgtggaacaaaattttgttgatgaagatatgttcacttttgtatctgaagaagatgtttcccttgagaaggggagtgcaattccagttccagttccaacatcaagttctgacaatataacaggaggttatgattgcaatatttgtctcgactcggcacacgatcctgttgtcaccctctgcggacacctctactgctggccttgcatttacaagtggcttcaagttgatagatctactccgggatcagaagagaaatgtaaatgtccagtctgtaaggctcacatctcaaactcatcgctggtacctctttatggccgtggaacatcatccccagaatctgaatccaagaagtctcaacgggatgttgtagtaccacgcaggcctcaagccatcgagatagcaactctcgttaattcattgtctccagcttctcacgtgagtcagcaacttcatcacagacgatccgtcccctctgcctttggtagctatgctgctttggctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="65858" stop="63290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65558" g_stop="65452" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65451" i_stop="64104" i_length="1348">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64103" g_stop="63590" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="621" r_length="514" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E688526" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65558" e_stop="65452"/>
          <exon e_start="64103" e_stop="63590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCCTCCTCCATTCAATTTTTCATCTTTTTTCTCACCGTCTCTTTACCTTCGCTTTCTGCAATTCGCCATTGTTGAAACTTCGTCCTTACGTTTTTCATCTATTGGTACGTTTTTCATCTTATTTTTTGTTTTTGTGTTTATGTTTTTGAGATCTTTGTTTTCGCATATTATTGATTGAATTATTTGTTATGATTTCTGTTCATTGTAATCTATGTTTGTTTTGAGTTTTGTGTTGATTGAGAAAATGGAAAATTTTCAATTTGAGGTTAAGATTGTTAATTTTGGATTTTGACATTGTGAAGGAATTTGGTCAACTTACTTTAATTTTTGGTTAATTTTTTTTTTTGGTTATGGGTAGGAGTAGTTAGTGTTGCTATGTTGTGGGATCGGGGATGAATTACATGTTTTAATCGGGTTTGAGCCAAAGAAATGAAAAAAATTACTATGAATTAGTCGGGTTCTAATGCGGGTATTGTTGGATCAGGGTGGAAACAAAAACAGAAAGAATTAATGGTGTTGATTAGTTTTGTGTAAAATAAAATCTTTATATTCATTGAACTGTTTGTGTAAGTGAGTTCTTTTGATGATTTTAGTTTTGTGCAATGCCTATTTTGTTTCAGAAATTGAAGAATTTTATTTGTTTCGTTTCAAATGCATGATAGGGAAAGTTTTGCGTGCATTTATGAAATGGAGAAATGGAAAGAGGAATTGAGGAGATAATTTTGTTATATGTCAAACTTGTGCCATCAAAATTTTGTGTTTTTATCTCCTATCGGCATAAGAATATTAACCTTTCCGACTGCGTTTCTATGTGTTTTCGTCTTTTAGACTTGAAATGTAGGCTTGGAGATGTAGACTGGAGTTTGTCAATCAAAACGAATTGAACTGCAGTTTTAGCCACACTCTAGCTTTGTGATCTAATTTTTCAGCCCCGCCACTTCTGGTTTGAAGAAGACAGGTTCTAGCGAATGGATGCAATTATATGGTTTAGTATTTAAAGCGTGTTTACTTGGGAGTTGGGACTCTAATTTTTCCAACCCTTGCTCCCTAATCACACGCATACTCCCTATAGGCTAAGTTCTAAAAGAAAAGGAAAACGAAAAAAAGGAAGAACTGGAAGATGCTTTGTTAAGTTGTCTTCTTCATTTTGCTTTCCAAATGGTCAACTCATCAGAAATGGACCAACTGTATATAATAAGTCTTTTGGATATCCGATTTCATGCTTCGATAGAAGTTGTTGACATTCAATCATGTTGTTGTGTTGATGAATGTGTATCTTTTCATTCAAATGGTTCATTTCTTGTTTTAAGCTATTTTATAGATCCTGTCCTTGTAGATTTTCAGGTTAAGTTTGTATCGATGGTCATTTACTTCCTATGGATTTATTTGTGGAGTGTCTGAATGAACTTTATAGGGTGACTGATTTGTTTGCAAATTTTTCCGTTTTAACAGACCTCATGGCTGTGGAACAAAATTTTGTTGATGAAGATATGTTCACTTTTGTATCTGAAGAAGATGTTTCCCTTGAGAAGGGGAGTGCAATTCCAGTTCCAGTTCCAACATCAAGTTCTGACAATATAACAGGAGGTTATGATTGCAATATTTGTCTCGACTCGGCACACGATCCTGTTGTCACCCTCTGCGGACACCTCTACTGCTGGCCTTGCATTTACAAGTGGCTTCAAGTTGATAGATCTACTCCGGGATCAGAAGAGAAATGTAAATGTCCAGTCTGTAAGGCTCACATCTCAAACTCATCGCTGGTACCTCTTTATGGCCGTGGAACATCATCCCCAGAATCTGAATCCAAGAAGTCTCAACGGGATGTTGTAGTACCACGCAGGCCTCAAGCCATCGAGATAGCAACTCTCGTTAATTCATTGTCTCCAGCTTCTCACGTGAGTCAGCAACTTCATCACAGACGATCCGTCCCCTCTGCCTTTGGTAGCTATGCTGCTTTGGCTCC</genome_strand>
        <mrna_strand>TTATCCTCCTCCATTCAATTTTTCATCTTTTTTCTCACCGTCTCTTTACCTTCGCTTTCTGCAATTCGCCATTGTTGAAACTTCGTCCTTACGTTTTTCATCTATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCATGGCTGTGGAACAAAATTTTGTTGATGAAGATATGTTCACTTTTGTATCTGAAGAAGATGTTTCCCTTGAGAAGGGGAGTGCAATTCCAGTTCCAGTTCCAACATCAAGTTCTGACAATATAACAGGAGGTTATGATTGCAATATTTGTCTCGACTCGGCACACGATCCTGTTGTCACCCTCTGCGGACACCTCTACTGCTGGCCTTGCATTTACAAGTGGCTTCAAGTTGATAGATCTACTCCGGGATCAGAAGAGAAATGTAAATGTCCAGTCTGTAAGGCTCACATCTCAAACTCATCGCTGGTACCTCTTTATGGCCGTGGAACATCATCCCCAGAATCTGAATCCAAGAAGTCTCAACGGGATGTTGTAGTACCACGCAGGCCTCAAGCCATCGAGATAGCAACTCTCGTTAATTCATTGTCTCCAGCTTCTCACGTGAGTCAGCAACTTCATCACAGACGATCCGTCCCCTCTGCCTTTGGTAGCTATGCTGCTTTGGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E211765" ref_strand="+" ref_description="SGN-E211765 [cLEC-66-G10]">
      <seq>tatcctcctccattcaatttttcatcttttttctcaccgtctctttaccttcgctttctgcaattcgccattgttgaaacttcgtccttacgtttttcatctattgacctcatggctgtggaacaaaattttgttgatgaagatatgttcacttttgtatctgaagaagatgtttcccttgagaaggggagtgcaattccagttccagttccaacatcaagttctgacaatataacaggaggttatgattgcaatatttgtctcgactcggcacacgatcctgttgtcaccctctgcggacacctctactgctggccttgcatttacaagtggcttcaagttgatagatctactccgggatcagaagagaaatgtaaatgtccagtctgtaaggctcacatctcaaactcatcgctggtacctctttatggccgtggaacatcatccccagaatctgaatccaagaagtctcaacgggatgttgtagtaccacgcaggcctcaagccatcgagatagcaactctcgttaattcattgtctccagcttctcacgtgagtcagcaacttcatcacagacgatccgtcccctctggctttggtagctatgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="65857" stop="63299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65557" g_stop="65452" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65451" i_stop="64104" i_length="1348">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64103" g_stop="63599" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="611" r_length="505" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E211765" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65557" e_stop="65452"/>
          <exon e_start="64103" e_stop="63599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCTCCTCCATTCAATTTTTCATCTTTTTTCTCACCGTCTCTTTACCTTCGCTTTCTGCAATTCGCCATTGTTGAAACTTCGTCCTTACGTTTTTCATCTATTGGTACGTTTTTCATCTTATTTTTTGTTTTTGTGTTTATGTTTTTGAGATCTTTGTTTTCGCATATTATTGATTGAATTATTTGTTATGATTTCTGTTCATTGTAATCTATGTTTGTTTTGAGTTTTGTGTTGATTGAGAAAATGGAAAATTTTCAATTTGAGGTTAAGATTGTTAATTTTGGATTTTGACATTGTGAAGGAATTTGGTCAACTTACTTTAATTTTTGGTTAATTTTTTTTTTTGGTTATGGGTAGGAGTAGTTAGTGTTGCTATGTTGTGGGATCGGGGATGAATTACATGTTTTAATCGGGTTTGAGCCAAAGAAATGAAAAAAATTACTATGAATTAGTCGGGTTCTAATGCGGGTATTGTTGGATCAGGGTGGAAACAAAAACAGAAAGAATTAATGGTGTTGATTAGTTTTGTGTAAAATAAAATCTTTATATTCATTGAACTGTTTGTGTAAGTGAGTTCTTTTGATGATTTTAGTTTTGTGCAATGCCTATTTTGTTTCAGAAATTGAAGAATTTTATTTGTTTCGTTTCAAATGCATGATAGGGAAAGTTTTGCGTGCATTTATGAAATGGAGAAATGGAAAGAGGAATTGAGGAGATAATTTTGTTATATGTCAAACTTGTGCCATCAAAATTTTGTGTTTTTATCTCCTATCGGCATAAGAATATTAACCTTTCCGACTGCGTTTCTATGTGTTTTCGTCTTTTAGACTTGAAATGTAGGCTTGGAGATGTAGACTGGAGTTTGTCAATCAAAACGAATTGAACTGCAGTTTTAGCCACACTCTAGCTTTGTGATCTAATTTTTCAGCCCCGCCACTTCTGGTTTGAAGAAGACAGGTTCTAGCGAATGGATGCAATTATATGGTTTAGTATTTAAAGCGTGTTTACTTGGGAGTTGGGACTCTAATTTTTCCAACCCTTGCTCCCTAATCACACGCATACTCCCTATAGGCTAAGTTCTAAAAGAAAAGGAAAACGAAAAAAAGGAAGAACTGGAAGATGCTTTGTTAAGTTGTCTTCTTCATTTTGCTTTCCAAATGGTCAACTCATCAGAAATGGACCAACTGTATATAATAAGTCTTTTGGATATCCGATTTCATGCTTCGATAGAAGTTGTTGACATTCAATCATGTTGTTGTGTTGATGAATGTGTATCTTTTCATTCAAATGGTTCATTTCTTGTTTTAAGCTATTTTATAGATCCTGTCCTTGTAGATTTTCAGGTTAAGTTTGTATCGATGGTCATTTACTTCCTATGGATTTATTTGTGGAGTGTCTGAATGAACTTTATAGGGTGACTGATTTGTTTGCAAATTTTTCCGTTTTAACAGACCTCATGGCTGTGGAACAAAATTTTGTTGATGAAGATATGTTCACTTTTGTATCTGAAGAAGATGTTTCCCTTGAGAAGGGGAGTGCAATTCCAGTTCCAGTTCCAACATCAAGTTCTGACAATATAACAGGAGGTTATGATTGCAATATTTGTCTCGACTCGGCACACGATCCTGTTGTCACCCTCTGCGGACACCTCTACTGCTGGCCTTGCATTTACAAGTGGCTTCAAGTTGATAGATCTACTCCGGGATCAGAAGAGAAATGTAAATGTCCAGTCTGTAAGGCTCACATCTCAAACTCATCGCTGGTACCTCTTTATGGCCGTGGAACATCATCCCCAGAATCTGAATCCAAGAAGTCTCAACGGGATGTTGTAGTACCACGCAGGCCTCAAGCCATCGAGATAGCAACTCTCGTTAATTCATTGTCTCCAGCTTCTCACGTGAGTCAGCAACTTCATCACAGACGATCCGTCCCCTCTGCCTTTGGTAGCTATGCTGC</genome_strand>
        <mrna_strand>TATCCTCCTCCATTCAATTTTTCATCTTTTTTCTCACCGTCTCTTTACCTTCGCTTTCTGCAATTCGCCATTGTTGAAACTTCGTCCTTACGTTTTTCATCTATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCATGGCTGTGGAACAAAATTTTGTTGATGAAGATATGTTCACTTTTGTATCTGAAGAAGATGTTTCCCTTGAGAAGGGGAGTGCAATTCCAGTTCCAGTTCCAACATCAAGTTCTGACAATATAACAGGAGGTTATGATTGCAATATTTGTCTCGACTCGGCACACGATCCTGTTGTCACCCTCTGCGGACACCTCTACTGCTGGCCTTGCATTTACAAGTGGCTTCAAGTTGATAGATCTACTCCGGGATCAGAAGAGAAATGTAAATGTCCAGTCTGTAAGGCTCACATCTCAAACTCATCGCTGGTACCTCTTTATGGCCGTGGAACATCATCCCCAGAATCTGAATCCAAGAAGTCTCAACGGGATGTTGTAGTACCACGCAGGCCTCAAGCCATCGAGATAGCAACTCTCGTTAATTCATTGTCTCCAGCTTCTCACGTGAGTCAGCAACTTCATCACAGACGATCCGTCCCCTCTGGCTTTGGTAGCTATGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E707141" ref_strand="+" ref_description="SGN-E707141 [FA32AG01]">
      <seq>ctttctctcgctctcctccccatctctcccactatccacacacactctctatctctctcttctctttccatggctgctgtgttggaaaccattacagtcccacgcgcatcggcgctgccgtcgtcatcgcttgctcaggtcgccggttattccttctccggtcctcgtttctctgttagcttctctcaattcagcggccttaagatccagccaattcgctcatctgtatccactagctcatgctctaaaatcattccccgaggaggacgagtcgtttgcgaagctcaggataccgccgtggaagtggctactgttagtgataaaacatggaagacacttgtagttgagtctactgtacctgtactggttgaattttgggctccgtggtgtggtccatgccgaatgatccaccccgtcattgatgaactagcgaaggaatatgttggcaagcttacatgcttaaagctgaacacagatgaaagtccttccattgcaaccgaatttggaatccgaagcatcccaaccgtgatgatattcaagaatggagagaagaaagatgcaatcattggtgcagttcctaaatcaacacttaccacctccatagaaaaattcttgtaaaatgttgcatatatagatatattatctgggaatttactcgtattattccctttcaccctctagtgcggcgatggtttaagtaaaccagtaatgctcctgtatagttgggttgcattgtgtgtttccccttacttaaacgttacgttgatcgtttctcatgtttagaaattcactttttatttataaatgcttttaacaaagcataatactactcatgctttgattaaaaactcgaatatttggtgcccgtagcatcaaaactatcacaggcaaagcacatatgctatatatgtttttcagtaatctttggttttgtgagttcaggtactcactgctaaagttttcttggctgttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70829" stop="67657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70529" g_stop="70226" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="68630" i_length="1596">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68629" g_stop="67959" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="975" r_length="671" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67958" i_stop="67743" i_length="216">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.872" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67742" g_stop="67733" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="976" r_stop="985" r_length="10" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E707141" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>985</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70529" e_stop="70226"/>
          <exon e_start="68629" e_stop="67959"/>
          <exon e_start="67742" e_stop="67733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCTCTCGCTCTCCTCCCCATCTCTCCCACTATCCACACACACTCTCTATCTCTCTCTTCTCTTTCCATGGCTGCTGTGTTGGAAACCATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAGGTATTTTGTAACTGAAAGTATTTGTTACTACTCTTTATATTGAAATTCTCCATGCTCCTTTATGCCTTAGCTGAAAACTCAGTTCCAGGAAATTGAATTGTGTTAACGGTGGAAGTTTCTACTATTAAGATGAGTTAATTTTTAGTTTCATCTGTTCTAAATAGATAATAAGTTCTCATAGTAATAGTAATAACTTGAGTTATTTCGCATTCAAGGTATATTTACTTGGAATGGGAAATGAAATCTGTGAACAATATGTGTGTCTTTCCTTGTATTCTGCTTGTGAGTATCGGTATTTTGGTGTTGGTTACTTTGCTTGCCTAATTTCCTTATTAATTGAATTAGATTTATGTAGTGTGCGAGAGTTGGTAGATTTGAGAACAGAGTATGCTTTATATTTTCCTTGAATAGTGAGCTGGTGTTTGTCATTTATTACTCTCTCAGTTGAAATGTTGAACATTTGGATACTTTCCGTAGAAAGAGAGGGAAGAAAATGCTCAAGTTTTGTGTTTTCTCTTCCCTCGTGTTTAAATCCTGATACATCGAAGGCAAGTAAGAGCCTCAAAGTTGCCGTTTGTTGTTTTGTGCACATAGCTAATAACTTTGGATTAGCTCTCAGGTCAGTATAACTGGAATTTGTCCCGGAAAACCACTAGTAATATGTCGATTACTTGTGTTAGATGTCCTTTAGGAGTCTTAGAGACAAGAATAATGTTGTGATACTCTGCGAAAGAGAAGAAAGGAAACAAGAGAATGCAAAACATTTGAAACATCCTTCGTGTAAAAATATTGGGAACATCGTTCATGTGCTCCTTCACCTTTCACAACCACCTGACATCTCCCACAAGACCCTTGTAATGTTCCCTGCGCTAAGCTCTTCCATAGTTCCTCTTGTTTGCTTGTTTACTTTGTTTCCTTTTCTATTGGAAATAGTATGTTAGGTGCATGTAATGGTTTGCATCCTACTGCAGTTAATAGCATTGTATGCATGGTATTTAAGTGGAGAAGGGCAGTGGGTGGGTTTATATCCACGAAATTTTGAACCATGCGCCACTGACTCTTGGGCATTTCTCAGCTATAAAAAGAACTATGTTGGTCTGTGCTCTTTAACAATTTATATAAGCGAACTAGTTTGTCAAGACAATAAGCTCAATAAAGTGTAAAAGATGTCATTGGGCCGCTATGGTATAATACCCTCAAAGCTTTGTTGCTTTCATAGTTTCACTTACCTGCTAAGAATTCATTGAATATTGGTTGCTAGCATGTGAAGCTACTGCCTAAACATTGTTGGTCATATCAGTGCTTCCTTTGCCTTGCGGAATCTTCATGTTTCACCATGGCTTAAGACCTTTTGTGTGAGATGTAGATGTTGCACCAGTTATGTACTTATATTAGCCATGGTTAGTTGGGAAAATGGGAAGTTCTGTTGTCAACTTTTCTCTTTAGCTTCCATAATATGATTAGTTTTTTTAAAGAATTGGATACACAACCTTTTCCTGTCTAGTTAATTGTGGAGAGAATTGCTGTTGTAGATTTCTCATTAATCATTATAGTTAGCATCATTTGCTGGTTTAACACAGTTCTTGGAAATTGCAGTGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGATCGTTTCTCATGTTTAGAAATTCACTTTTTATTTATAAATGCTTTTAACAAAGCATAATACTACTCATGCTTTGATTAAAAACTCGAATATTTGGTGCCCGTAGCATCAAAACTATCACAGGCAAAGCACATATGCTATATATGTTTTTCAGTAATCTTTGGTTTTGTGAGTTCAGGTACTCACTGCTAGAGTTTTCTGGGCTGTTCAATACCTTGCCGACTGCTGATAGCAAATTTGTGTTTGATAGAGCTGCAATTCATGGCAGCAAATCCGGGCATTCGTGTAATGGTAAGAATATATGTAAGTCATTTCTGTAACGATGGTATATCAGGCCCTTCGATATGTGGATGATAATTCTCAGCTGACATGGCATTAACAGTATGTTTAAAAAACTAATTGGTCCATCCCTCTGATATACCTACAGGGCAAAAAAA</genome_strand>
        <mrna_strand>CTTTCTCTCGCTCTCCTCCCCATCTCTCCCACTATCCACACACACTCTCTATCTCTCTCTTCTCTTTCCATGGCTGCTGTGTTGGAAACCATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGATCGTTTCTCATGTTTAGAAATTCACTTTTTATTTATAAATGCTTTTAACAAAGCATAATACTACTCATGCTTTGATTAAAAACTCGAATATTTGGTGCCCGTAGCATCAAAACTATCACAGGCAAAGCACATATGCTATATATGTTTTTCAGTAATCTTTGGTTTTGTGAGTTCAGGTACTCACTGCTAAAGTTTTCTTGGCTGTTCAA........................................................................................................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E727675" ref_strand="+" ref_description="SGN-E727675 [LA15BF04]">
      <seq>atctctctcttctctttccatggctgctgtgttggaaaccattacagtcccacgcgcatcggcgctgccgtcgtcatcgcttgctcaggtcgccggttattccttctccggtcctcgtttctctgttagcttctctcaattcagcggccttaagatccagccaattcgctcatctgtatccactagctcatgctctaaaatcattccccgaggaggacgagtcgtttgcgaagctcaggataccgccgtggaagtggctactgttagtgataaaacatggaagacacttgtagttgagtctactgtacctgtactggttgaattttgggctccgtggtgtggtccatgccgaatgatccaccccgtcattgatgaactagcgaaggaatatgttggcaagcttacatgcttaaagctgaacacagatgaaagtccttccattgcaaccgaatttggaatccgaagcatcccaaccgtgatgatattcaagaatggagagaagaaagatgcaatcattggtgcagttcctaaatcaacacttaccacctccatagaaaaattcttgtaaaatgttgcatatatagatatattatctgggaatttactcgtattattccctttcaccctctagtgcggcgatggtttaagtaaaccagtaatgctcctgtatagttgggttgcattgtgtgtttccccttacttaaacgttacgttgatcgtttctcatgtttagaaattcactttttatttataaatgcttttaacaaagcataatactactcatgctttgattaaaaactcgaatatttggtgcccgtagcatcaaaactatcacaggcaaagcacatatgctatatatgtttttcagtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70779" stop="67713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70479" g_stop="70226" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="68630" i_length="1596">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68629" g_stop="68006" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="878" r_length="624" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E727675" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>878</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70479" e_stop="70226"/>
          <exon e_start="68629" e_stop="68006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTCTCTTCTCTTTCCATGGCTGCTGTGTTGGAAACCATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAGGTATTTTGTAACTGAAAGTATTTGTTACTACTCTTTATATTGAAATTCTCCATGCTCCTTTATGCCTTAGCTGAAAACTCAGTTCCAGGAAATTGAATTGTGTTAACGGTGGAAGTTTCTACTATTAAGATGAGTTAATTTTTAGTTTCATCTGTTCTAAATAGATAATAAGTTCTCATAGTAATAGTAATAACTTGAGTTATTTCGCATTCAAGGTATATTTACTTGGAATGGGAAATGAAATCTGTGAACAATATGTGTGTCTTTCCTTGTATTCTGCTTGTGAGTATCGGTATTTTGGTGTTGGTTACTTTGCTTGCCTAATTTCCTTATTAATTGAATTAGATTTATGTAGTGTGCGAGAGTTGGTAGATTTGAGAACAGAGTATGCTTTATATTTTCCTTGAATAGTGAGCTGGTGTTTGTCATTTATTACTCTCTCAGTTGAAATGTTGAACATTTGGATACTTTCCGTAGAAAGAGAGGGAAGAAAATGCTCAAGTTTTGTGTTTTCTCTTCCCTCGTGTTTAAATCCTGATACATCGAAGGCAAGTAAGAGCCTCAAAGTTGCCGTTTGTTGTTTTGTGCACATAGCTAATAACTTTGGATTAGCTCTCAGGTCAGTATAACTGGAATTTGTCCCGGAAAACCACTAGTAATATGTCGATTACTTGTGTTAGATGTCCTTTAGGAGTCTTAGAGACAAGAATAATGTTGTGATACTCTGCGAAAGAGAAGAAAGGAAACAAGAGAATGCAAAACATTTGAAACATCCTTCGTGTAAAAATATTGGGAACATCGTTCATGTGCTCCTTCACCTTTCACAACCACCTGACATCTCCCACAAGACCCTTGTAATGTTCCCTGCGCTAAGCTCTTCCATAGTTCCTCTTGTTTGCTTGTTTACTTTGTTTCCTTTTCTATTGGAAATAGTATGTTAGGTGCATGTAATGGTTTGCATCCTACTGCAGTTAATAGCATTGTATGCATGGTATTTAAGTGGAGAAGGGCAGTGGGTGGGTTTATATCCACGAAATTTTGAACCATGCGCCACTGACTCTTGGGCATTTCTCAGCTATAAAAAGAACTATGTTGGTCTGTGCTCTTTAACAATTTATATAAGCGAACTAGTTTGTCAAGACAATAAGCTCAATAAAGTGTAAAAGATGTCATTGGGCCGCTATGGTATAATACCCTCAAAGCTTTGTTGCTTTCATAGTTTCACTTACCTGCTAAGAATTCATTGAATATTGGTTGCTAGCATGTGAAGCTACTGCCTAAACATTGTTGGTCATATCAGTGCTTCCTTTGCCTTGCGGAATCTTCATGTTTCACCATGGCTTAAGACCTTTTGTGTGAGATGTAGATGTTGCACCAGTTATGTACTTATATTAGCCATGGTTAGTTGGGAAAATGGGAAGTTCTGTTGTCAACTTTTCTCTTTAGCTTCCATAATATGATTAGTTTTTTTAAAGAATTGGATACACAACCTTTTCCTGTCTAGTTAATTGTGGAGAGAATTGCTGTTGTAGATTTCTCATTAATCATTATAGTTAGCATCATTTGCTGGTTTAACACAGTTCTTGGAAATTGCAGTGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGATCGTTTCTCATGTTTAGAAATTCACTTTTTATTTATAAATGCTTTTAACAAAGCATAATACTACTCATGCTTTGATTAAAAACTCGAATATTTGGTGCCCGTAGCATCAAAACTATCACAGGCAAAGCACATATGCTATATATGTTTTTCAGTAATCTTTGG</genome_strand>
        <mrna_strand>ATCTCTCTCTTCTCTTTCCATGGCTGCTGTGTTGGAAACCATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGATCGTTTCTCATGTTTAGAAATTCACTTTTTATTTATAAATGCTTTTAACAAAGCATAATACTACTCATGCTTTGATTAAAAACTCGAATATTTGGTGCCCGTAGCATCAAAACTATCACAGGCAAAGCACATATGCTATATATGTTTTTCAGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E727105" ref_strand="+" ref_description="SGN-E727105 [LA13DA05]">
      <seq>ctctctatctctctcttctctttccatggctgctgtgttggaaaccattacagtcccacgcgcatcggcgctgccgtcgtcatcgcttgctcaggtcgccggttattccttctccggtcctcgtttctctgttagcttctctcaattcagcggccttaagatccagccaattcgctcatctgtatccactagctcatgctctaaaatcattccccgaggaggacgagtcgtttgcgaagctcaggataccgccgtggaagtggctactgttagtgataaaacatggaagacacttgtagttgagtctactgtacctgtactggttgaattttgggctccgtggtgtggtccatgccgaatgatccaccccgtcattgatgaactagcgaaggaatatgttggcaagcttacatgcttaaagctgaacacagatgaaagtccttccattgcaaccgaatttggaatccgaagcatcccaaccgtgatgatattcaagaatggagagaagaaagatgcaatcattggtgcagttcctaaatcaacacttaccacctccatagaaaaattcttgtaaaatgttgcatatatagatatattatctgggaatttactcgtattattccctttcaccctctagtgcggcgatggtttaagtaaaccagtaatgctcctgtatagttgggttgcattgtgtgtttccccttacttaaacgttacgttgatcgtttctcatgtttagaaattcactttttatttataaatgcttttaacaaagcataatactactcatgctttgattaaaaactccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70785" stop="67778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70485" g_stop="70226" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="68630" i_length="1596">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68629" g_stop="68071" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="819" r_length="559" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E727105" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70485" e_stop="70226"/>
          <exon e_start="68629" e_stop="68071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTATCTCTCTCTTCTCTTTCCATGGCTGCTGTGTTGGAAACCATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAGGTATTTTGTAACTGAAAGTATTTGTTACTACTCTTTATATTGAAATTCTCCATGCTCCTTTATGCCTTAGCTGAAAACTCAGTTCCAGGAAATTGAATTGTGTTAACGGTGGAAGTTTCTACTATTAAGATGAGTTAATTTTTAGTTTCATCTGTTCTAAATAGATAATAAGTTCTCATAGTAATAGTAATAACTTGAGTTATTTCGCATTCAAGGTATATTTACTTGGAATGGGAAATGAAATCTGTGAACAATATGTGTGTCTTTCCTTGTATTCTGCTTGTGAGTATCGGTATTTTGGTGTTGGTTACTTTGCTTGCCTAATTTCCTTATTAATTGAATTAGATTTATGTAGTGTGCGAGAGTTGGTAGATTTGAGAACAGAGTATGCTTTATATTTTCCTTGAATAGTGAGCTGGTGTTTGTCATTTATTACTCTCTCAGTTGAAATGTTGAACATTTGGATACTTTCCGTAGAAAGAGAGGGAAGAAAATGCTCAAGTTTTGTGTTTTCTCTTCCCTCGTGTTTAAATCCTGATACATCGAAGGCAAGTAAGAGCCTCAAAGTTGCCGTTTGTTGTTTTGTGCACATAGCTAATAACTTTGGATTAGCTCTCAGGTCAGTATAACTGGAATTTGTCCCGGAAAACCACTAGTAATATGTCGATTACTTGTGTTAGATGTCCTTTAGGAGTCTTAGAGACAAGAATAATGTTGTGATACTCTGCGAAAGAGAAGAAAGGAAACAAGAGAATGCAAAACATTTGAAACATCCTTCGTGTAAAAATATTGGGAACATCGTTCATGTGCTCCTTCACCTTTCACAACCACCTGACATCTCCCACAAGACCCTTGTAATGTTCCCTGCGCTAAGCTCTTCCATAGTTCCTCTTGTTTGCTTGTTTACTTTGTTTCCTTTTCTATTGGAAATAGTATGTTAGGTGCATGTAATGGTTTGCATCCTACTGCAGTTAATAGCATTGTATGCATGGTATTTAAGTGGAGAAGGGCAGTGGGTGGGTTTATATCCACGAAATTTTGAACCATGCGCCACTGACTCTTGGGCATTTCTCAGCTATAAAAAGAACTATGTTGGTCTGTGCTCTTTAACAATTTATATAAGCGAACTAGTTTGTCAAGACAATAAGCTCAATAAAGTGTAAAAGATGTCATTGGGCCGCTATGGTATAATACCCTCAAAGCTTTGTTGCTTTCATAGTTTCACTTACCTGCTAAGAATTCATTGAATATTGGTTGCTAGCATGTGAAGCTACTGCCTAAACATTGTTGGTCATATCAGTGCTTCCTTTGCCTTGCGGAATCTTCATGTTTCACCATGGCTTAAGACCTTTTGTGTGAGATGTAGATGTTGCACCAGTTATGTACTTATATTAGCCATGGTTAGTTGGGAAAATGGGAAGTTCTGTTGTCAACTTTTCTCTTTAGCTTCCATAATATGATTAGTTTTTTTAAAGAATTGGATACACAACCTTTTCCTGTCTAGTTAATTGTGGAGAGAATTGCTGTTGTAGATTTCTCATTAATCATTATAGTTAGCATCATTTGCTGGTTTAACACAGTTCTTGGAAATTGCAGTGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGATCGTTTCTCATGTTTAGAAATTCACTTTTTATTTATAAATGCTTTTAACAAAGCATAATACTACTCATGCTTTGATTAAAAACTCGAATATTTGGTG</genome_strand>
        <mrna_strand>CTCTCTATCTCTCTCTTCTCTTTCCATGGCTGCTGTGTTGGAAACCATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGATCGTTTCTCATGTTTAGAAATTCACTTTTTATTTATAAATGCTTTTAACAAAGCATAATACTACTCATGCTTTGATTAAAAACTCCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E373680" ref_strand="-" ref_description="SGN-E373680 [TUS-33-E22]">
      <seq>caattcagcggccttaagatccagccaattcgctcatctgtatccactagctcatgctctaaaatcattccccgaggaggacgagtcgtttgcgaagctcaggataccgccgtggaagtggctactgttagtgataaaacatggaagacacttgtagttgagtctactgtacctgtactggttgaattttgggctccgtggtgtggtccatgccgaatgatccaccccgtcattgatgaactagcgaaggaatatgttggcaagcttacatgcttaaagctgaacacagatgaaagtccttccattgcaaccgaatttggaatccgaagcatcccaaccgtgatgatattcaagaatggagagaagaaagatgcaatcattggtgcagttcctaaatcaacacttaccacctccatagaaaaattcttgtaaaatgttgcatatatagatatattatctgggaatttactcgtattattccctttcaccctctagtgcggcgatggtttaagtaaaccagtaatgctcctgtatagttgggttgcattgtgtgtttccccttacttaaacgttacgttgatcgtttctcatgtttagaaattcactttttatttataaatgcttttaacaaagcataatactactcatgctttgattaaaaactcgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70643" stop="67778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70343" g_stop="70226" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="68630" i_length="1596">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68629" g_stop="68072" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="676" r_length="558" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E373680" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373680" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="70343" e_stop="70226"/>
          <exon e_start="68629" e_stop="68072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAGGTATTTTGTAACTGAAAGTATTTGTTACTACTCTTTATATTGAAATTCTCCATGCTCCTTTATGCCTTAGCTGAAAACTCAGTTCCAGGAAATTGAATTGTGTTAACGGTGGAAGTTTCTACTATTAAGATGAGTTAATTTTTAGTTTCATCTGTTCTAAATAGATAATAAGTTCTCATAGTAATAGTAATAACTTGAGTTATTTCGCATTCAAGGTATATTTACTTGGAATGGGAAATGAAATCTGTGAACAATATGTGTGTCTTTCCTTGTATTCTGCTTGTGAGTATCGGTATTTTGGTGTTGGTTACTTTGCTTGCCTAATTTCCTTATTAATTGAATTAGATTTATGTAGTGTGCGAGAGTTGGTAGATTTGAGAACAGAGTATGCTTTATATTTTCCTTGAATAGTGAGCTGGTGTTTGTCATTTATTACTCTCTCAGTTGAAATGTTGAACATTTGGATACTTTCCGTAGAAAGAGAGGGAAGAAAATGCTCAAGTTTTGTGTTTTCTCTTCCCTCGTGTTTAAATCCTGATACATCGAAGGCAAGTAAGAGCCTCAAAGTTGCCGTTTGTTGTTTTGTGCACATAGCTAATAACTTTGGATTAGCTCTCAGGTCAGTATAACTGGAATTTGTCCCGGAAAACCACTAGTAATATGTCGATTACTTGTGTTAGATGTCCTTTAGGAGTCTTAGAGACAAGAATAATGTTGTGATACTCTGCGAAAGAGAAGAAAGGAAACAAGAGAATGCAAAACATTTGAAACATCCTTCGTGTAAAAATATTGGGAACATCGTTCATGTGCTCCTTCACCTTTCACAACCACCTGACATCTCCCACAAGACCCTTGTAATGTTCCCTGCGCTAAGCTCTTCCATAGTTCCTCTTGTTTGCTTGTTTACTTTGTTTCCTTTTCTATTGGAAATAGTATGTTAGGTGCATGTAATGGTTTGCATCCTACTGCAGTTAATAGCATTGTATGCATGGTATTTAAGTGGAGAAGGGCAGTGGGTGGGTTTATATCCACGAAATTTTGAACCATGCGCCACTGACTCTTGGGCATTTCTCAGCTATAAAAAGAACTATGTTGGTCTGTGCTCTTTAACAATTTATATAAGCGAACTAGTTTGTCAAGACAATAAGCTCAATAAAGTGTAAAAGATGTCATTGGGCCGCTATGGTATAATACCCTCAAAGCTTTGTTGCTTTCATAGTTTCACTTACCTGCTAAGAATTCATTGAATATTGGTTGCTAGCATGTGAAGCTACTGCCTAAACATTGTTGGTCATATCAGTGCTTCCTTTGCCTTGCGGAATCTTCATGTTTCACCATGGCTTAAGACCTTTTGTGTGAGATGTAGATGTTGCACCAGTTATGTACTTATATTAGCCATGGTTAGTTGGGAAAATGGGAAGTTCTGTTGTCAACTTTTCTCTTTAGCTTCCATAATATGATTAGTTTTTTTAAAGAATTGGATACACAACCTTTTCCTGTCTAGTTAATTGTGGAGAGAATTGCTGTTGTAGATTTCTCATTAATCATTATAGTTAGCATCATTTGCTGGTTTAACACAGTTCTTGGAAATTGCAGTGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGATCGTTTCTCATGTTTAGAAATTCACTTTTTATTTATAAATGCTTTTAACAAAGCATAATACTACTCATGCTTTGATTAAAAACTCGAATATTTGGT</genome_strand>
        <mrna_strand>CAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGATCGTTTCTCATGTTTAGAAATTCACTTTTTATTTATAAATGCTTTTAACAAAGCATAATACTACTCATGCTTTGATTAAAAACTCGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E726575" ref_strand="+" ref_description="SGN-E726575 [LA12AH08]">
      <seq>ctctctatctctctcttctctttccatggctgctgtgttggaaaccattacagtcccacgcgcatcggcgctgccgtcgtcatcgcttgctcaggtcgccggttattccttctccggtcctcgtttctctgttagcttctctcaattcagcggccttaagatccagccaattcgctcatctgtatccactagctcatgctctaaaatcattccccgaggaggacgagtcgtttgcgaagctcaggataccgccgtggaagtggctactgttagtgataaaacatggaagacacttgtagttgagtctactgtacctgtactggttgaattttgggctccgtggtgtggtccatgccgaatgatccaccccgtcattgatgaactagcgaaggaatatgttggcaagcttacatgcttaaagctgaacacagatgaaagtccttccattgcaaccgaatttggaatccgaagcatcccaaccgtgatgatattcaagaatggagagaagaaagatgcaatcattggtgcagttcctaaatcaacacttaccacctccatagaaaaattcttgtaaaatgttgcatatatagatatattatctgggaatttactcgtattattccctttcaccctctagtgcggcgatggtttaagtaaaccagtaatgctcctgtatagttgggttgcattgtgtgtttccccttacttaaacgttacgttgatcgtttctcatgtttagaaattcactttttatttataaatgcttttaacaaagcataatactactcatgctttgattaaaactcgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70785" stop="67778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70485" g_stop="70226" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="68630" i_length="1596">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68629" g_stop="68073" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="816" r_length="556" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E726575" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70485" e_stop="70226"/>
          <exon e_start="68629" e_stop="68073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTATCTCTCTCTTCTCTTTCCATGGCTGCTGTGTTGGAAACCATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAGGTATTTTGTAACTGAAAGTATTTGTTACTACTCTTTATATTGAAATTCTCCATGCTCCTTTATGCCTTAGCTGAAAACTCAGTTCCAGGAAATTGAATTGTGTTAACGGTGGAAGTTTCTACTATTAAGATGAGTTAATTTTTAGTTTCATCTGTTCTAAATAGATAATAAGTTCTCATAGTAATAGTAATAACTTGAGTTATTTCGCATTCAAGGTATATTTACTTGGAATGGGAAATGAAATCTGTGAACAATATGTGTGTCTTTCCTTGTATTCTGCTTGTGAGTATCGGTATTTTGGTGTTGGTTACTTTGCTTGCCTAATTTCCTTATTAATTGAATTAGATTTATGTAGTGTGCGAGAGTTGGTAGATTTGAGAACAGAGTATGCTTTATATTTTCCTTGAATAGTGAGCTGGTGTTTGTCATTTATTACTCTCTCAGTTGAAATGTTGAACATTTGGATACTTTCCGTAGAAAGAGAGGGAAGAAAATGCTCAAGTTTTGTGTTTTCTCTTCCCTCGTGTTTAAATCCTGATACATCGAAGGCAAGTAAGAGCCTCAAAGTTGCCGTTTGTTGTTTTGTGCACATAGCTAATAACTTTGGATTAGCTCTCAGGTCAGTATAACTGGAATTTGTCCCGGAAAACCACTAGTAATATGTCGATTACTTGTGTTAGATGTCCTTTAGGAGTCTTAGAGACAAGAATAATGTTGTGATACTCTGCGAAAGAGAAGAAAGGAAACAAGAGAATGCAAAACATTTGAAACATCCTTCGTGTAAAAATATTGGGAACATCGTTCATGTGCTCCTTCACCTTTCACAACCACCTGACATCTCCCACAAGACCCTTGTAATGTTCCCTGCGCTAAGCTCTTCCATAGTTCCTCTTGTTTGCTTGTTTACTTTGTTTCCTTTTCTATTGGAAATAGTATGTTAGGTGCATGTAATGGTTTGCATCCTACTGCAGTTAATAGCATTGTATGCATGGTATTTAAGTGGAGAAGGGCAGTGGGTGGGTTTATATCCACGAAATTTTGAACCATGCGCCACTGACTCTTGGGCATTTCTCAGCTATAAAAAGAACTATGTTGGTCTGTGCTCTTTAACAATTTATATAAGCGAACTAGTTTGTCAAGACAATAAGCTCAATAAAGTGTAAAAGATGTCATTGGGCCGCTATGGTATAATACCCTCAAAGCTTTGTTGCTTTCATAGTTTCACTTACCTGCTAAGAATTCATTGAATATTGGTTGCTAGCATGTGAAGCTACTGCCTAAACATTGTTGGTCATATCAGTGCTTCCTTTGCCTTGCGGAATCTTCATGTTTCACCATGGCTTAAGACCTTTTGTGTGAGATGTAGATGTTGCACCAGTTATGTACTTATATTAGCCATGGTTAGTTGGGAAAATGGGAAGTTCTGTTGTCAACTTTTCTCTTTAGCTTCCATAATATGATTAGTTTTTTTAAAGAATTGGATACACAACCTTTTCCTGTCTAGTTAATTGTGGAGAGAATTGCTGTTGTAGATTTCTCATTAATCATTATAGTTAGCATCATTTGCTGGTTTAACACAGTTCTTGGAAATTGCAGTGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGATCGTTTCTCATGTTTAGAAATTCACTTTTTATTTATAAATGCTTTTAACAAAGCATAATACTACTCATGCTTTGATTAAAAACTCGAATATTTGG</genome_strand>
        <mrna_strand>CTCTCTATCTCTCTCTTCTCTTTCCATGGCTGCTGTGTTGGAAACCATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGATCGTTTCTCATGTTTAGAAATTCACTTTTTATTTATAAATGCTTTTAACAAAGCATAATACTACTCATGCTTTGATT-AAAACTCGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E732153" ref_strand="+" ref_description="SGN-E732153 [LB01BF10]">
      <seq>cgttattccttctccggtcctcgtttctctgttagcttctctcaattcagcggccttaagatccagccaattcgctcatctgtatccactagctcatgctctaaaatcattccccgaggaggacgagtcgtttgcgaagctcaggataccgccgtggaagtggctactgttagtgataaaacatggaagacacttgtagttgagtctactgtacctgtactggttgaattttgggctccgtggtgtggtccatgccgaatgatccaccccgtcattgatgaactagcgaaggaatatgttggcaagcttacatgcttaaagctgaacacagatgaaagtccttccattgcaaccgaatttggaatccgaagcatcccaaccgtgatgatattcaagaatggagagaagaaagatgcaatcattggtgcagttcctaaatcaacacttaccacctccatagaaaaattcttgtaaaatgttgcatatatagatatattatctgggaatttactcgtattattccctttcaccctctagtgcggcgatggtttaagtaaaccagtaatgctcctgtatagttgggttgcattgtgtgtttccccttacttaaacgttacgttgatcgtttctcatgtttagaaattcactttttatttataaatgcttttaacaaagcataatactactcatgctttgattannnnannanaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70684" stop="67790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70385" g_stop="70226" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="68630" i_length="1596">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68629" g_stop="68073" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="717" r_length="557" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E732153" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70385" e_stop="70226"/>
          <exon e_start="68629" e_stop="68073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAGGTATTTTGTAACTGAAAGTATTTGTTACTACTCTTTATATTGAAATTCTCCATGCTCCTTTATGCCTTAGCTGAAAACTCAGTTCCAGGAAATTGAATTGTGTTAACGGTGGAAGTTTCTACTATTAAGATGAGTTAATTTTTAGTTTCATCTGTTCTAAATAGATAATAAGTTCTCATAGTAATAGTAATAACTTGAGTTATTTCGCATTCAAGGTATATTTACTTGGAATGGGAAATGAAATCTGTGAACAATATGTGTGTCTTTCCTTGTATTCTGCTTGTGAGTATCGGTATTTTGGTGTTGGTTACTTTGCTTGCCTAATTTCCTTATTAATTGAATTAGATTTATGTAGTGTGCGAGAGTTGGTAGATTTGAGAACAGAGTATGCTTTATATTTTCCTTGAATAGTGAGCTGGTGTTTGTCATTTATTACTCTCTCAGTTGAAATGTTGAACATTTGGATACTTTCCGTAGAAAGAGAGGGAAGAAAATGCTCAAGTTTTGTGTTTTCTCTTCCCTCGTGTTTAAATCCTGATACATCGAAGGCAAGTAAGAGCCTCAAAGTTGCCGTTTGTTGTTTTGTGCACATAGCTAATAACTTTGGATTAGCTCTCAGGTCAGTATAACTGGAATTTGTCCCGGAAAACCACTAGTAATATGTCGATTACTTGTGTTAGATGTCCTTTAGGAGTCTTAGAGACAAGAATAATGTTGTGATACTCTGCGAAAGAGAAGAAAGGAAACAAGAGAATGCAAAACATTTGAAACATCCTTCGTGTAAAAATATTGGGAACATCGTTCATGTGCTCCTTCACCTTTCACAACCACCTGACATCTCCCACAAGACCCTTGTAATGTTCCCTGCGCTAAGCTCTTCCATAGTTCCTCTTGTTTGCTTGTTTACTTTGTTTCCTTTTCTATTGGAAATAGTATGTTAGGTGCATGTAATGGTTTGCATCCTACTGCAGTTAATAGCATTGTATGCATGGTATTTAAGTGGAGAAGGGCAGTGGGTGGGTTTATATCCACGAAATTTTGAACCATGCGCCACTGACTCTTGGGCATTTCTCAGCTATAAAAAGAACTATGTTGGTCTGTGCTCTTTAACAATTTATATAAGCGAACTAGTTTGTCAAGACAATAAGCTCAATAAAGTGTAAAAGATGTCATTGGGCCGCTATGGTATAATACCCTCAAAGCTTTGTTGCTTTCATAGTTTCACTTACCTGCTAAGAATTCATTGAATATTGGTTGCTAGCATGTGAAGCTACTGCCTAAACATTGTTGGTCATATCAGTGCTTCCTTTGCCTTGCGGAATCTTCATGTTTCACCATGGCTTAAGACCTTTTGTGTGAGATGTAGATGTTGCACCAGTTATGTACTTATATTAGCCATGGTTAGTTGGGAAAATGGGAAGTTCTGTTGTCAACTTTTCTCTTTAGCTTCCATAATATGATTAGTTTTTTTAAAGAATTGGATACACAACCTTTTCCTGTCTAGTTAATTGTGGAGAGAATTGCTGTTGTAGATTTCTCATTAATCATTATAGTTAGCATCATTTGCTGGTTTAACACAGTTCTTGGAAATTGCAGTGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGATCGTTTCTCATGTTTAGAAATTCACTTTTTATTTATAAATGCTTTTAACAAAGCATAATACTACTCATGCTTTGATTAAAAACTCGAATATTTGG</genome_strand>
        <mrna_strand>CGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGATCGTTTCTCATGTTTAGAAATTCACTTTTTATTTATAAATGCTTTTAACAAAGCATAATACTACTCATGCTTTGATTANNNNANNANAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E726610" ref_strand="+" ref_description="SGN-E726610 [LA12BC09]">
      <seq>atccactagctcatgctctaaaatcattccccgaggaggacgagtcgtttgcgaagctcaggataccgccgtggaagtggttactgttagtgataaaacatggaagacacttgtagttgagtctactgtacctgtactggttgaattttgggctccgtggtgtggtccatgccgaatgatccaccccgtcattgatgaactagcgaaggaatatgttggcaagcttacatgcttaaagctgaacacagatgaaagtccttccattgcaaccgaatttggaatccgaagcatcccaaccgtgatgatattcaataatggagagaagaaagatgcaatcattggtgcagttcctaaatcaacacttaccacctccatagaaaaattcttgtaaaatgttgcatatatagatatattatctgggaatttactcgtattattccctttcaccctctagtgcggcgatggtttaagtaaaccagtaatgctcctgtatagttgggttgcattgtgtgtttccccttacttaaacgttacgttgatcgtttctcatgtttagaaattcactttttatttataaatgcttttaacaaagcataatactactcatgctttgattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70602" stop="67786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70302" g_stop="70226" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="68630" i_length="1596">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68629" g_stop="68078" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="629" r_length="552" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E726610" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70302" e_stop="70226"/>
          <exon e_start="68629" e_stop="68078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAGGTATTTTGTAACTGAAAGTATTTGTTACTACTCTTTATATTGAAATTCTCCATGCTCCTTTATGCCTTAGCTGAAAACTCAGTTCCAGGAAATTGAATTGTGTTAACGGTGGAAGTTTCTACTATTAAGATGAGTTAATTTTTAGTTTCATCTGTTCTAAATAGATAATAAGTTCTCATAGTAATAGTAATAACTTGAGTTATTTCGCATTCAAGGTATATTTACTTGGAATGGGAAATGAAATCTGTGAACAATATGTGTGTCTTTCCTTGTATTCTGCTTGTGAGTATCGGTATTTTGGTGTTGGTTACTTTGCTTGCCTAATTTCCTTATTAATTGAATTAGATTTATGTAGTGTGCGAGAGTTGGTAGATTTGAGAACAGAGTATGCTTTATATTTTCCTTGAATAGTGAGCTGGTGTTTGTCATTTATTACTCTCTCAGTTGAAATGTTGAACATTTGGATACTTTCCGTAGAAAGAGAGGGAAGAAAATGCTCAAGTTTTGTGTTTTCTCTTCCCTCGTGTTTAAATCCTGATACATCGAAGGCAAGTAAGAGCCTCAAAGTTGCCGTTTGTTGTTTTGTGCACATAGCTAATAACTTTGGATTAGCTCTCAGGTCAGTATAACTGGAATTTGTCCCGGAAAACCACTAGTAATATGTCGATTACTTGTGTTAGATGTCCTTTAGGAGTCTTAGAGACAAGAATAATGTTGTGATACTCTGCGAAAGAGAAGAAAGGAAACAAGAGAATGCAAAACATTTGAAACATCCTTCGTGTAAAAATATTGGGAACATCGTTCATGTGCTCCTTCACCTTTCACAACCACCTGACATCTCCCACAAGACCCTTGTAATGTTCCCTGCGCTAAGCTCTTCCATAGTTCCTCTTGTTTGCTTGTTTACTTTGTTTCCTTTTCTATTGGAAATAGTATGTTAGGTGCATGTAATGGTTTGCATCCTACTGCAGTTAATAGCATTGTATGCATGGTATTTAAGTGGAGAAGGGCAGTGGGTGGGTTTATATCCACGAAATTTTGAACCATGCGCCACTGACTCTTGGGCATTTCTCAGCTATAAAAAGAACTATGTTGGTCTGTGCTCTTTAACAATTTATATAAGCGAACTAGTTTGTCAAGACAATAAGCTCAATAAAGTGTAAAAGATGTCATTGGGCCGCTATGGTATAATACCCTCAAAGCTTTGTTGCTTTCATAGTTTCACTTACCTGCTAAGAATTCATTGAATATTGGTTGCTAGCATGTGAAGCTACTGCCTAAACATTGTTGGTCATATCAGTGCTTCCTTTGCCTTGCGGAATCTTCATGTTTCACCATGGCTTAAGACCTTTTGTGTGAGATGTAGATGTTGCACCAGTTATGTACTTATATTAGCCATGGTTAGTTGGGAAAATGGGAAGTTCTGTTGTCAACTTTTCTCTTTAGCTTCCATAATATGATTAGTTTTTTTAAAGAATTGGATACACAACCTTTTCCTGTCTAGTTAATTGTGGAGAGAATTGCTGTTGTAGATTTCTCATTAATCATTATAGTTAGCATCATTTGCTGGTTTAACACAGTTCTTGGAAATTGCAGTGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGATCGTTTCTCATGTTTAGAAATTCACTTTTTATTTATAAATGCTTTTAACAAAGCATAATACTACTCATGCTTTGATTAAAAACTCGAATA</genome_strand>
        <mrna_strand>ATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAATAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGATCGTTTCTCATGTTTAGAAATTCACTTTTTATTTATAAATGCTTTTAACAAAGCATAATACTACTCATGCTTTGATTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E732610" ref_strand="+" ref_description="SGN-E732610 [LB02CF04]">
      <seq>atccactagctcatgctctaaaatcattccccgaggaggacgagtcgtttgcgaagctcaggataccgccgtggaagtggttactgttagtgataaaacatggaagacacttgtagttgagtctactgtacctgtactggttgaattttgggctccgtggtgtggtccatgccgaatgatccaccccgtcattgatgaactagcgaaggaatatgttggcaagcttacatgcttaaagctgaacacagatgaaagtccttccattgcaaccgaatttggaatccgaagcatcccaaccgtgatgatattcaagaatggagagaagaaagatgcaatcattggtgcagttcctaaatcaacacttaccacctccatagaaaaattcttgtaaaatgttgcatatatagatatattatctgggaatttactcgtattattccctttcaccctctagtgcggcgatggtttaagtaaaccagtaatgctcctgtatagttgggttgcattgtgtgtttccccttacttaaacgttacgttgatcgtttctcatgtttagaaattcactttttatttataaatgcttttaacaaagcataatactactcatgctttgattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70602" stop="67786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70302" g_stop="70226" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="68630" i_length="1596">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68629" g_stop="68078" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="629" r_length="552" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E732610" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70302" e_stop="70226"/>
          <exon e_start="68629" e_stop="68078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAGGTATTTTGTAACTGAAAGTATTTGTTACTACTCTTTATATTGAAATTCTCCATGCTCCTTTATGCCTTAGCTGAAAACTCAGTTCCAGGAAATTGAATTGTGTTAACGGTGGAAGTTTCTACTATTAAGATGAGTTAATTTTTAGTTTCATCTGTTCTAAATAGATAATAAGTTCTCATAGTAATAGTAATAACTTGAGTTATTTCGCATTCAAGGTATATTTACTTGGAATGGGAAATGAAATCTGTGAACAATATGTGTGTCTTTCCTTGTATTCTGCTTGTGAGTATCGGTATTTTGGTGTTGGTTACTTTGCTTGCCTAATTTCCTTATTAATTGAATTAGATTTATGTAGTGTGCGAGAGTTGGTAGATTTGAGAACAGAGTATGCTTTATATTTTCCTTGAATAGTGAGCTGGTGTTTGTCATTTATTACTCTCTCAGTTGAAATGTTGAACATTTGGATACTTTCCGTAGAAAGAGAGGGAAGAAAATGCTCAAGTTTTGTGTTTTCTCTTCCCTCGTGTTTAAATCCTGATACATCGAAGGCAAGTAAGAGCCTCAAAGTTGCCGTTTGTTGTTTTGTGCACATAGCTAATAACTTTGGATTAGCTCTCAGGTCAGTATAACTGGAATTTGTCCCGGAAAACCACTAGTAATATGTCGATTACTTGTGTTAGATGTCCTTTAGGAGTCTTAGAGACAAGAATAATGTTGTGATACTCTGCGAAAGAGAAGAAAGGAAACAAGAGAATGCAAAACATTTGAAACATCCTTCGTGTAAAAATATTGGGAACATCGTTCATGTGCTCCTTCACCTTTCACAACCACCTGACATCTCCCACAAGACCCTTGTAATGTTCCCTGCGCTAAGCTCTTCCATAGTTCCTCTTGTTTGCTTGTTTACTTTGTTTCCTTTTCTATTGGAAATAGTATGTTAGGTGCATGTAATGGTTTGCATCCTACTGCAGTTAATAGCATTGTATGCATGGTATTTAAGTGGAGAAGGGCAGTGGGTGGGTTTATATCCACGAAATTTTGAACCATGCGCCACTGACTCTTGGGCATTTCTCAGCTATAAAAAGAACTATGTTGGTCTGTGCTCTTTAACAATTTATATAAGCGAACTAGTTTGTCAAGACAATAAGCTCAATAAAGTGTAAAAGATGTCATTGGGCCGCTATGGTATAATACCCTCAAAGCTTTGTTGCTTTCATAGTTTCACTTACCTGCTAAGAATTCATTGAATATTGGTTGCTAGCATGTGAAGCTACTGCCTAAACATTGTTGGTCATATCAGTGCTTCCTTTGCCTTGCGGAATCTTCATGTTTCACCATGGCTTAAGACCTTTTGTGTGAGATGTAGATGTTGCACCAGTTATGTACTTATATTAGCCATGGTTAGTTGGGAAAATGGGAAGTTCTGTTGTCAACTTTTCTCTTTAGCTTCCATAATATGATTAGTTTTTTTAAAGAATTGGATACACAACCTTTTCCTGTCTAGTTAATTGTGGAGAGAATTGCTGTTGTAGATTTCTCATTAATCATTATAGTTAGCATCATTTGCTGGTTTAACACAGTTCTTGGAAATTGCAGTGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGATCGTTTCTCATGTTTAGAAATTCACTTTTTATTTATAAATGCTTTTAACAAAGCATAATACTACTCATGCTTTGATTAAAAACTCGAATA</genome_strand>
        <mrna_strand>ATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGATCGTTTCTCATGTTTAGAAATTCACTTTTTATTTATAAATGCTTTTAACAAAGCATAATACTACTCATGCTTTGATTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E348915" ref_strand="+" ref_description="SGN-E348915 [cTOF-29-O13]">
      <seq>atctgtatccactagctcatgctctaaaatcattccccgaggaggacgaagtcgtttgcgaagctcaggataccgccgtggaagtggctactgttagtgataaaacatggaagacacttgtagttgagtctactgtacctgtactggttgaattttgggctccgtggtgtggtccatgccgaatgatccaccccgtcattgatgaactagcgaaggaatatgttggcaagcttacatgcttaaagctgaacacagatgaaagtccttccattgcaaccgaatttggaatccgaagcatcccaaccgtgatgatattcaagaatggagagaagaaagatgcaatcattggtgcagttcctaaatcaacacttaccacctccatagaaaaattcttgtaaaatgttgcatatatagatatattatctgggaatttactcgtattattccctttcaccctctagtgcggcgatggtttaagtaaaccagtaatgctcctgtatagttgggttgcattggtgtgtttccccttactttaaacgttacgttgatcgtttctcatgtttagaaattcactctttatttataaatgcttttaacaaagcataatactactcatgctttgattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70608" stop="67786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70308" g_stop="70226" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="68630" i_length="1596">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68629" g_stop="68080" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="636" r_length="552" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E348915" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70308" e_stop="70226"/>
          <exon e_start="68629" e_stop="68080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACG-AGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAGGTATTTTGTAACTGAAAGTATTTGTTACTACTCTTTATATTGAAATTCTCCATGCTCCTTTATGCCTTAGCTGAAAACTCAGTTCCAGGAAATTGAATTGTGTTAACGGTGGAAGTTTCTACTATTAAGATGAGTTAATTTTTAGTTTCATCTGTTCTAAATAGATAATAAGTTCTCATAGTAATAGTAATAACTTGAGTTATTTCGCATTCAAGGTATATTTACTTGGAATGGGAAATGAAATCTGTGAACAATATGTGTGTCTTTCCTTGTATTCTGCTTGTGAGTATCGGTATTTTGGTGTTGGTTACTTTGCTTGCCTAATTTCCTTATTAATTGAATTAGATTTATGTAGTGTGCGAGAGTTGGTAGATTTGAGAACAGAGTATGCTTTATATTTTCCTTGAATAGTGAGCTGGTGTTTGTCATTTATTACTCTCTCAGTTGAAATGTTGAACATTTGGATACTTTCCGTAGAAAGAGAGGGAAGAAAATGCTCAAGTTTTGTGTTTTCTCTTCCCTCGTGTTTAAATCCTGATACATCGAAGGCAAGTAAGAGCCTCAAAGTTGCCGTTTGTTGTTTTGTGCACATAGCTAATAACTTTGGATTAGCTCTCAGGTCAGTATAACTGGAATTTGTCCCGGAAAACCACTAGTAATATGTCGATTACTTGTGTTAGATGTCCTTTAGGAGTCTTAGAGACAAGAATAATGTTGTGATACTCTGCGAAAGAGAAGAAAGGAAACAAGAGAATGCAAAACATTTGAAACATCCTTCGTGTAAAAATATTGGGAACATCGTTCATGTGCTCCTTCACCTTTCACAACCACCTGACATCTCCCACAAGACCCTTGTAATGTTCCCTGCGCTAAGCTCTTCCATAGTTCCTCTTGTTTGCTTGTTTACTTTGTTTCCTTTTCTATTGGAAATAGTATGTTAGGTGCATGTAATGGTTTGCATCCTACTGCAGTTAATAGCATTGTATGCATGGTATTTAAGTGGAGAAGGGCAGTGGGTGGGTTTATATCCACGAAATTTTGAACCATGCGCCACTGACTCTTGGGCATTTCTCAGCTATAAAAAGAACTATGTTGGTCTGTGCTCTTTAACAATTTATATAAGCGAACTAGTTTGTCAAGACAATAAGCTCAATAAAGTGTAAAAGATGTCATTGGGCCGCTATGGTATAATACCCTCAAAGCTTTGTTGCTTTCATAGTTTCACTTACCTGCTAAGAATTCATTGAATATTGGTTGCTAGCATGTGAAGCTACTGCCTAAACATTGTTGGTCATATCAGTGCTTCCTTTGCCTTGCGGAATCTTCATGTTTCACCATGGCTTAAGACCTTTTGTGTGAGATGTAGATGTTGCACCAGTTATGTACTTATATTAGCCATGGTTAGTTGGGAAAATGGGAAGTTCTGTTGTCAACTTTTCTCTTTAGCTTCCATAATATGATTAGTTTTTTTAAAGAATTGGATACACAACCTTTTCCTGTCTAGTTAATTGTGGAGAGAATTGCTGTTGTAGATTTCTCATTAATCATTATAGTTAGCATCATTTGCTGGTTTAACACAGTTCTTGGAAATTGCAGTGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATT-GTGTGTTTCCCCTTAC-TTAAACGTTACGTTGATCGTTTCTCATGTTTAGAAATTCACTTTTTATTTATAAATGCTTTTAACAAAGCATAATACTACTCATGCTTTGATTAAAAACTCGAA</genome_strand>
        <mrna_strand>ATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGGTGTGTTTCCCCTTACTTTAAACGTTACGTTGATCGTTTCTCATGTTTAGAAATTCACTCTTTATTTATAAATGCTTTTAACAAAGCATAATACTACTCATGCTTTGATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E713084" ref_strand="+" ref_description="SGN-E713084 [FB06CG02]">
      <seq>ttaagatccagccaattcgctcatctgtatccactagctcatgctctaaaatcattccccgaggaggacgagtcgtttgcgaagctcaggataccgccgtggaagtggctactgttagtgataaaacatggaagacacttgtagttgagtctactgtacctgtactggttgaattttgggctccgtggtgtggtccatgccgaatgatccaccccgtcattgatgaactagcgaaggaatatgttggcaagcttacatgcttaaagctgaacacagatgaaagtccttccattgcaaccgaatttggaatccgaagcatcccaaccgtgatgatattcaagaatggagagaagaaagatgcaatcattggtgcagttcctaaatcaacacttaccacctccatagaaaaattcttgtaaaatgttgcatatatagatatattatctgggaatttactcgtattattccctttcaccctctagtgcggcgatggtttaagtaaaccagtaatgctcctgtatagttgggttgcattgtgtgtttccccttacttaaacgttacgttgatcgtttctcatgtttagaaattcactttttatttataaatgcttttaacaaagcataatactactcatgctttgattaaaaactanaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70630" stop="67778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70330" g_stop="70226" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="68630" i_length="1596">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68629" g_stop="68081" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="654" r_length="549" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="655" polyA_stop="670"/>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E713084" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70330" e_stop="70226"/>
          <exon e_start="68629" e_stop="68081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAGGTATTTTGTAACTGAAAGTATTTGTTACTACTCTTTATATTGAAATTCTCCATGCTCCTTTATGCCTTAGCTGAAAACTCAGTTCCAGGAAATTGAATTGTGTTAACGGTGGAAGTTTCTACTATTAAGATGAGTTAATTTTTAGTTTCATCTGTTCTAAATAGATAATAAGTTCTCATAGTAATAGTAATAACTTGAGTTATTTCGCATTCAAGGTATATTTACTTGGAATGGGAAATGAAATCTGTGAACAATATGTGTGTCTTTCCTTGTATTCTGCTTGTGAGTATCGGTATTTTGGTGTTGGTTACTTTGCTTGCCTAATTTCCTTATTAATTGAATTAGATTTATGTAGTGTGCGAGAGTTGGTAGATTTGAGAACAGAGTATGCTTTATATTTTCCTTGAATAGTGAGCTGGTGTTTGTCATTTATTACTCTCTCAGTTGAAATGTTGAACATTTGGATACTTTCCGTAGAAAGAGAGGGAAGAAAATGCTCAAGTTTTGTGTTTTCTCTTCCCTCGTGTTTAAATCCTGATACATCGAAGGCAAGTAAGAGCCTCAAAGTTGCCGTTTGTTGTTTTGTGCACATAGCTAATAACTTTGGATTAGCTCTCAGGTCAGTATAACTGGAATTTGTCCCGGAAAACCACTAGTAATATGTCGATTACTTGTGTTAGATGTCCTTTAGGAGTCTTAGAGACAAGAATAATGTTGTGATACTCTGCGAAAGAGAAGAAAGGAAACAAGAGAATGCAAAACATTTGAAACATCCTTCGTGTAAAAATATTGGGAACATCGTTCATGTGCTCCTTCACCTTTCACAACCACCTGACATCTCCCACAAGACCCTTGTAATGTTCCCTGCGCTAAGCTCTTCCATAGTTCCTCTTGTTTGCTTGTTTACTTTGTTTCCTTTTCTATTGGAAATAGTATGTTAGGTGCATGTAATGGTTTGCATCCTACTGCAGTTAATAGCATTGTATGCATGGTATTTAAGTGGAGAAGGGCAGTGGGTGGGTTTATATCCACGAAATTTTGAACCATGCGCCACTGACTCTTGGGCATTTCTCAGCTATAAAAAGAACTATGTTGGTCTGTGCTCTTTAACAATTTATATAAGCGAACTAGTTTGTCAAGACAATAAGCTCAATAAAGTGTAAAAGATGTCATTGGGCCGCTATGGTATAATACCCTCAAAGCTTTGTTGCTTTCATAGTTTCACTTACCTGCTAAGAATTCATTGAATATTGGTTGCTAGCATGTGAAGCTACTGCCTAAACATTGTTGGTCATATCAGTGCTTCCTTTGCCTTGCGGAATCTTCATGTTTCACCATGGCTTAAGACCTTTTGTGTGAGATGTAGATGTTGCACCAGTTATGTACTTATATTAGCCATGGTTAGTTGGGAAAATGGGAAGTTCTGTTGTCAACTTTTCTCTTTAGCTTCCATAATATGATTAGTTTTTTTAAAGAATTGGATACACAACCTTTTCCTGTCTAGTTAATTGTGGAGAGAATTGCTGTTGTAGATTTCTCATTAATCATTATAGTTAGCATCATTTGCTGGTTTAACACAGTTCTTGGAAATTGCAGTGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGATCGTTTCTCATGTTTAGAAATTCACTTTTTATTTATAAATGCTTTTAACAAAGCATAATACTACTCATGCTTTGATTAAAAACTCGA</genome_strand>
        <mrna_strand>TTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGATCGTTTCTCATGTTTAGAAATTCACTTTTTATTTATAAATGCTTTTAACAAAGCATAATACTACTCATGCTTTGATTAAAAACTANA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E347195" ref_strand="+" ref_description="SGN-E347195 [cTOF-25-M4]">
      <seq>actgtacctgtactggttgaattttgggctccgtggtgtggtccatgccgaatgatccaccccgtcattgatgaactagcgaaggaatatgttggcaagcttacatgcttaaagctgaacacagatgaaagtccttccattgcaaccgaatttggaatccgaagcatcccaaccgtgatgatattcaagaatggagagaagaaagatgcaatcattggtgcagttcctaaatcaacacttaccacctccatagaaaaattcttgtaaaatgttgcatatatagatatattatctgggaatttactcgtattattccctttcaccctctagtgcggcgatggtttaagtaaaccagtaatgctcctgtatagttgggttgcattgtgtgtttccccttacttaaacgttacgttgatcgtttctcatgtttagaaattcactttttatttataaatgcttttaacaaagcataatactactcatgctttgattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="68882" stop="67786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68582" g_stop="68081" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E347195" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68582" e_stop="68081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGATCGTTTCTCATGTTTAGAAATTCACTTTTTATTTATAAATGCTTTTAACAAAGCATAATACTACTCATGCTTTGATTAAAAACTCGA</genome_strand>
        <mrna_strand>ACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGATCGTTTCTCATGTTTAGAAATTCACTTTTTATTTATAAATGCTTTTAACAAAGCATAATACTACTCATGCTTTGATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E233895" ref_strand="-" ref_description="SGN-E233895 [cLEL-8-N7]">
      <seq>agctgaacacagatgaaagtccttccatgcaaccgaatttggaatccgaagcatcccaaccgtgatatattcaagaatggagagaagaaagatgcaatcattggtgcagttcctaaatcaaacacttacccctccaagaaaaattcttgtaaaatgttgcatatatagatatattatctgggaatttactcgtattattccctttcaccctctagtgcggcgatggtttaagtaaaccagtaatgctcctgtatagttgggttgcattgtgtgtttccccttacttaaacgttacgttgatcgtttctcatgtttagaaattcactttttatttataaatgcttttaacaaagcataatactactcatgctttgattaaaaactcgaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="68770" stop="67778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68470" g_stop="68081" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="388" polyA_stop="409"/>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E233895" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233895" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68470" e_stop="68081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATC-AACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGATCGTTTCTCATGTTTAGAAATTCACTTTTTATTTATAAATGCTTTTAACAAAGCATAATACTACTCATGCTTTGATTAAAAACTCGA</genome_strand>
        <mrna_strand>AGCTGAACACAGATGAAAGTCCTTCCA-TGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGAT-ATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAAACACTTACC-CCTCCA-AGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGATCGTTTCTCATGTTTAGAAATTCACTTTTTATTTATAAATGCTTTTAACAAAGCATAATACTACTCATGCTTTGATTAAAAACTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E284275" ref_strand="+" ref_description="SGN-E284275 [cLER-16-J9]">
      <seq>tctcaattcagcggccttaagatccagccaattcgctcatctgtatccactagctcatgctctaaaatcattccccgaggaggacgagtcgtttgcgaagctcaggataccgccgtggaagtggctactgttagtgataaaacatggaagacacttgtagttgagtctactgtacctgtactggttgaattttgggctccgtggtgtggtccatgccgaatgatccaccccgtcattgatgaactagcgaaggaatatgttggcaagcttacatgcttaaagctgaacacagatgaaagtccttccattgcaaccgaatttggaatccgaagcatcccaaccgtgatgatattcaagaatggagagaagaaagatgcaatcattggtgcagttcctaaatcaacacttaccacctccatagaaaaattcttgtaaaatgttgcatatatagatatattatctgggaatttactcgtattattccctttcaccctctagtgcggcgatggtttaagtaaaccagtaatgctcctgtatagttgggttgcattgtgtgtttccccttacttaaacgttacgttgatcgtttctcatgtttagaaattcactttttatttataaatgcttttaacaaagcataatactactcatgctttgattaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70646" stop="67787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70346" g_stop="70226" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="68630" i_length="1596">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68629" g_stop="68087" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="664" r_length="543" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E284275" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70346" e_stop="70226"/>
          <exon e_start="68629" e_stop="68087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAGGTATTTTGTAACTGAAAGTATTTGTTACTACTCTTTATATTGAAATTCTCCATGCTCCTTTATGCCTTAGCTGAAAACTCAGTTCCAGGAAATTGAATTGTGTTAACGGTGGAAGTTTCTACTATTAAGATGAGTTAATTTTTAGTTTCATCTGTTCTAAATAGATAATAAGTTCTCATAGTAATAGTAATAACTTGAGTTATTTCGCATTCAAGGTATATTTACTTGGAATGGGAAATGAAATCTGTGAACAATATGTGTGTCTTTCCTTGTATTCTGCTTGTGAGTATCGGTATTTTGGTGTTGGTTACTTTGCTTGCCTAATTTCCTTATTAATTGAATTAGATTTATGTAGTGTGCGAGAGTTGGTAGATTTGAGAACAGAGTATGCTTTATATTTTCCTTGAATAGTGAGCTGGTGTTTGTCATTTATTACTCTCTCAGTTGAAATGTTGAACATTTGGATACTTTCCGTAGAAAGAGAGGGAAGAAAATGCTCAAGTTTTGTGTTTTCTCTTCCCTCGTGTTTAAATCCTGATACATCGAAGGCAAGTAAGAGCCTCAAAGTTGCCGTTTGTTGTTTTGTGCACATAGCTAATAACTTTGGATTAGCTCTCAGGTCAGTATAACTGGAATTTGTCCCGGAAAACCACTAGTAATATGTCGATTACTTGTGTTAGATGTCCTTTAGGAGTCTTAGAGACAAGAATAATGTTGTGATACTCTGCGAAAGAGAAGAAAGGAAACAAGAGAATGCAAAACATTTGAAACATCCTTCGTGTAAAAATATTGGGAACATCGTTCATGTGCTCCTTCACCTTTCACAACCACCTGACATCTCCCACAAGACCCTTGTAATGTTCCCTGCGCTAAGCTCTTCCATAGTTCCTCTTGTTTGCTTGTTTACTTTGTTTCCTTTTCTATTGGAAATAGTATGTTAGGTGCATGTAATGGTTTGCATCCTACTGCAGTTAATAGCATTGTATGCATGGTATTTAAGTGGAGAAGGGCAGTGGGTGGGTTTATATCCACGAAATTTTGAACCATGCGCCACTGACTCTTGGGCATTTCTCAGCTATAAAAAGAACTATGTTGGTCTGTGCTCTTTAACAATTTATATAAGCGAACTAGTTTGTCAAGACAATAAGCTCAATAAAGTGTAAAAGATGTCATTGGGCCGCTATGGTATAATACCCTCAAAGCTTTGTTGCTTTCATAGTTTCACTTACCTGCTAAGAATTCATTGAATATTGGTTGCTAGCATGTGAAGCTACTGCCTAAACATTGTTGGTCATATCAGTGCTTCCTTTGCCTTGCGGAATCTTCATGTTTCACCATGGCTTAAGACCTTTTGTGTGAGATGTAGATGTTGCACCAGTTATGTACTTATATTAGCCATGGTTAGTTGGGAAAATGGGAAGTTCTGTTGTCAACTTTTCTCTTTAGCTTCCATAATATGATTAGTTTTTTTAAAGAATTGGATACACAACCTTTTCCTGTCTAGTTAATTGTGGAGAGAATTGCTGTTGTAGATTTCTCATTAATCATTATAGTTAGCATCATTTGCTGGTTTAACACAGTTCTTGGAAATTGCAGTGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGATCGTTTCTCATGTTTAGAAATTCACTTTTTATTTATAAATGCTTTTAACAAAGCATAATACTACTCATGCTTTGATTAAAA</genome_strand>
        <mrna_strand>TCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGATCGTTTCTCATGTTTAGAAATTCACTTTTTATTTATAAATGCTTTTAACAAAGCATAATACTACTCATGCTTTGATTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E732285" ref_strand="+" ref_description="SGN-E732285 [LB01DA10]">
      <seq>ctatatatccactcgctctcgctctcctccccatctctcccactatccacacacactctctatctctctcttctctttccatggctgctgtgttggaaaccattacagtcccacgcgcatcggcgctgccgtcgtcatcgcttgctcaggtcgccggttattccttctccggtcctcgtttctctgttagcttctctcaattcagcggccttaagatccagccaattcgctcatctgtatccactagctcatgctctaaaatcattccccgaggaggacgagtcgtttgcgaagctcaggataccgccgtggaagtggctactgttagtgataaaacatggaagacacttgtagttgagtctactgtacctgtactggttgaattttgggctccgtggtgtggtccatgccgaatgatccaccccgtcattgatgaactagcgaaggaatatgttggcaagcttacatgcttaaagctgaacacagatgaaagtccttccattgcaaccgaatttggaatccgaagcatcccaaccgtgatgatattcaagaatggagagaagaaagatgcaatcattggtgcagttcctaaatcaacacttaccacctccatagaaaaattcttgtaaaatgttgcatatatagatatattatctgggaatttactcgtattattccctttcaccctctagtgcggcgatggtttaagtaaaccagtaatgctcctgtatagttgggttgcattgtgtgtttccccttacttaaacgttacgttgatcgtttctcatgtttagaaattcactttttatttataaatgcttttaacaaagcataatactactcatgctttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70839" stop="67792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70540" g_stop="70226" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="68630" i_length="1596">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68629" g_stop="68092" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="853" r_length="538" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E732285" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70540" e_stop="70226"/>
          <exon e_start="68629" e_stop="68092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAATATCCACTCGCTCTCGCTCTCCTCCCCATCTCTCCCACTATCCACACACACTCTCTATCTCTCTCTTCTCTTTCCATGGCTGCTGTGTTGGAAACCATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAGGTATTTTGTAACTGAAAGTATTTGTTACTACTCTTTATATTGAAATTCTCCATGCTCCTTTATGCCTTAGCTGAAAACTCAGTTCCAGGAAATTGAATTGTGTTAACGGTGGAAGTTTCTACTATTAAGATGAGTTAATTTTTAGTTTCATCTGTTCTAAATAGATAATAAGTTCTCATAGTAATAGTAATAACTTGAGTTATTTCGCATTCAAGGTATATTTACTTGGAATGGGAAATGAAATCTGTGAACAATATGTGTGTCTTTCCTTGTATTCTGCTTGTGAGTATCGGTATTTTGGTGTTGGTTACTTTGCTTGCCTAATTTCCTTATTAATTGAATTAGATTTATGTAGTGTGCGAGAGTTGGTAGATTTGAGAACAGAGTATGCTTTATATTTTCCTTGAATAGTGAGCTGGTGTTTGTCATTTATTACTCTCTCAGTTGAAATGTTGAACATTTGGATACTTTCCGTAGAAAGAGAGGGAAGAAAATGCTCAAGTTTTGTGTTTTCTCTTCCCTCGTGTTTAAATCCTGATACATCGAAGGCAAGTAAGAGCCTCAAAGTTGCCGTTTGTTGTTTTGTGCACATAGCTAATAACTTTGGATTAGCTCTCAGGTCAGTATAACTGGAATTTGTCCCGGAAAACCACTAGTAATATGTCGATTACTTGTGTTAGATGTCCTTTAGGAGTCTTAGAGACAAGAATAATGTTGTGATACTCTGCGAAAGAGAAGAAAGGAAACAAGAGAATGCAAAACATTTGAAACATCCTTCGTGTAAAAATATTGGGAACATCGTTCATGTGCTCCTTCACCTTTCACAACCACCTGACATCTCCCACAAGACCCTTGTAATGTTCCCTGCGCTAAGCTCTTCCATAGTTCCTCTTGTTTGCTTGTTTACTTTGTTTCCTTTTCTATTGGAAATAGTATGTTAGGTGCATGTAATGGTTTGCATCCTACTGCAGTTAATAGCATTGTATGCATGGTATTTAAGTGGAGAAGGGCAGTGGGTGGGTTTATATCCACGAAATTTTGAACCATGCGCCACTGACTCTTGGGCATTTCTCAGCTATAAAAAGAACTATGTTGGTCTGTGCTCTTTAACAATTTATATAAGCGAACTAGTTTGTCAAGACAATAAGCTCAATAAAGTGTAAAAGATGTCATTGGGCCGCTATGGTATAATACCCTCAAAGCTTTGTTGCTTTCATAGTTTCACTTACCTGCTAAGAATTCATTGAATATTGGTTGCTAGCATGTGAAGCTACTGCCTAAACATTGTTGGTCATATCAGTGCTTCCTTTGCCTTGCGGAATCTTCATGTTTCACCATGGCTTAAGACCTTTTGTGTGAGATGTAGATGTTGCACCAGTTATGTACTTATATTAGCCATGGTTAGTTGGGAAAATGGGAAGTTCTGTTGTCAACTTTTCTCTTTAGCTTCCATAATATGATTAGTTTTTTTAAAGAATTGGATACACAACCTTTTCCTGTCTAGTTAATTGTGGAGAGAATTGCTGTTGTAGATTTCTCATTAATCATTATAGTTAGCATCATTTGCTGGTTTAACACAGTTCTTGGAAATTGCAGTGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGATCGTTTCTCATGTTTAGAAATTCACTTTTTATTTATAAATGCTTTTAACAAAGCATAATACTACTCATGCTTTGAT</genome_strand>
        <mrna_strand>CTATATATCCACTCGCTCTCGCTCTCCTCCCCATCTCTCCCACTATCCACACACACTCTCTATCTCTCTCTTCTCTTTCCATGGCTGCTGTGTTGGAAACCATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGATCGTTTCTCATGTTTAGAAATTCACTTTTTATTTATAAATGCTTTTAACAAAGCATAATACTACTCATGCTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E732266" ref_strand="+" ref_description="SGN-E732266 [LB01CH03]">
      <seq>cttatatccactcgctctcgctctcctccccatctctcccactatccacacacactctctatctctctcttctctttccatggctgctgtgttggaaaccattacagtcccacgcgcatcggcgctgccgtcgtcatcgcttgctcaggtcgccggttattccttctccggtcctcgtttctctgttagcttctctcaattcagcggccttaagatccagccaattcgctcatctgtatccactagctcatgctctaaaatcattccccgaggaggacgagtcgtttgcgaagctcaggataccgccgtggaagtggctactgttagtgataaaacatggaagacacttgtagttgagtctactgtacctgtactggttgaattttgggctccgtggtgtggtccatgccgaatgatccaccccgtcattgatgaactagcgaaggaatatgttggcaagcttacatgcttaaagctgaacacagatgaaagtccttccattgcaaccgaatttggaatccgaagcatcccaaccgtgatgatattcaagaatggagagaagaaagatgcaatcattggtgcagttcctaaatcaacacttaccacctccatagaaaaattcttgtaaaatgttgcatatatagatatattatctgggaatttactcgtattattccctttcaccctctagtgcggcgatggtttaagtaaaccagtaatgctcctgtatagttgggttgcattgtgtgtttccccttacttaaacgttacgttgatcgtttctcatgtttagaaattcactttttatttataaatgcttttaaacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70836" stop="67808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70539" g_stop="70226" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="68630" i_length="1596">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68629" g_stop="68108" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="837" r_length="523" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E732266" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70539" e_stop="70226"/>
          <exon e_start="68629" e_stop="68108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATATCCACTCGCTCTCGCTCTCCTCCCCATCTCTCCCACTATCCACACACACTCTCTATCTCTCTCTTCTCTTTCCATGGCTGCTGTGTTGGAAACCATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAGGTATTTTGTAACTGAAAGTATTTGTTACTACTCTTTATATTGAAATTCTCCATGCTCCTTTATGCCTTAGCTGAAAACTCAGTTCCAGGAAATTGAATTGTGTTAACGGTGGAAGTTTCTACTATTAAGATGAGTTAATTTTTAGTTTCATCTGTTCTAAATAGATAATAAGTTCTCATAGTAATAGTAATAACTTGAGTTATTTCGCATTCAAGGTATATTTACTTGGAATGGGAAATGAAATCTGTGAACAATATGTGTGTCTTTCCTTGTATTCTGCTTGTGAGTATCGGTATTTTGGTGTTGGTTACTTTGCTTGCCTAATTTCCTTATTAATTGAATTAGATTTATGTAGTGTGCGAGAGTTGGTAGATTTGAGAACAGAGTATGCTTTATATTTTCCTTGAATAGTGAGCTGGTGTTTGTCATTTATTACTCTCTCAGTTGAAATGTTGAACATTTGGATACTTTCCGTAGAAAGAGAGGGAAGAAAATGCTCAAGTTTTGTGTTTTCTCTTCCCTCGTGTTTAAATCCTGATACATCGAAGGCAAGTAAGAGCCTCAAAGTTGCCGTTTGTTGTTTTGTGCACATAGCTAATAACTTTGGATTAGCTCTCAGGTCAGTATAACTGGAATTTGTCCCGGAAAACCACTAGTAATATGTCGATTACTTGTGTTAGATGTCCTTTAGGAGTCTTAGAGACAAGAATAATGTTGTGATACTCTGCGAAAGAGAAGAAAGGAAACAAGAGAATGCAAAACATTTGAAACATCCTTCGTGTAAAAATATTGGGAACATCGTTCATGTGCTCCTTCACCTTTCACAACCACCTGACATCTCCCACAAGACCCTTGTAATGTTCCCTGCGCTAAGCTCTTCCATAGTTCCTCTTGTTTGCTTGTTTACTTTGTTTCCTTTTCTATTGGAAATAGTATGTTAGGTGCATGTAATGGTTTGCATCCTACTGCAGTTAATAGCATTGTATGCATGGTATTTAAGTGGAGAAGGGCAGTGGGTGGGTTTATATCCACGAAATTTTGAACCATGCGCCACTGACTCTTGGGCATTTCTCAGCTATAAAAAGAACTATGTTGGTCTGTGCTCTTTAACAATTTATATAAGCGAACTAGTTTGTCAAGACAATAAGCTCAATAAAGTGTAAAAGATGTCATTGGGCCGCTATGGTATAATACCCTCAAAGCTTTGTTGCTTTCATAGTTTCACTTACCTGCTAAGAATTCATTGAATATTGGTTGCTAGCATGTGAAGCTACTGCCTAAACATTGTTGGTCATATCAGTGCTTCCTTTGCCTTGCGGAATCTTCATGTTTCACCATGGCTTAAGACCTTTTGTGTGAGATGTAGATGTTGCACCAGTTATGTACTTATATTAGCCATGGTTAGTTGGGAAAATGGGAAGTTCTGTTGTCAACTTTTCTCTTTAGCTTCCATAATATGATTAGTTTTTTTAAAGAATTGGATACACAACCTTTTCCTGTCTAGTTAATTGTGGAGAGAATTGCTGTTGTAGATTTCTCATTAATCATTATAGTTAGCATCATTTGCTGGTTTAACACAGTTCTTGGAAATTGCAGTGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGATCGTTTCTCATGTTTAGAAATTCACTTTTTATTTATAAATGCTTTT-AACAAAGCATAATA</genome_strand>
        <mrna_strand>CTTATATCCACTCGCTCTCGCTCTCCTCCCCATCTCTCCCACTATCCACACACACTCTCTATCTCTCTCTTCTCTTTCCATGGCTGCTGTGTTGGAAACCATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGATCGTTTCTCATGTTTAGAAATTCACTTTTTATTTATAAATGCTTTTAAACAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E217004" ref_strand="-" ref_description="SGN-E217004 [cLEL-1-E3]">
      <seq>tggtgtggtccatgccgaatgatccaccccgtcattgatgaactagcgaaggaatatgttggcaagcttacatgcttaaagctgaacacagatgaaagtccttccattgcaaccgaatttggaatccgaagcatcccaaccgtgatgatattcaagaatggagagaagaaagatgcaatcattggtgcagttcctaaatcaacacttaccacctccatagaaaaattcttgtaaaatgttgcatatatagatatattatctgggaatttactcgtattattccctttcaccctctagtgcggcgatggtttaagtaaaccagtaatgctcctgtatagttgggttgcattgtgtgtttccccttacttaaacgttacgttgatcgtttctcatgtccccaaattcactttttatttataaatgcttttaacaaagcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="68849" stop="67808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68549" g_stop="68114" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="437" polyA_stop="454"/>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E217004" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217004" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68549" e_stop="68114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGATCGTTTCTCATGTTTAGAAATTCACTTTTTATTTATAAATGCTTTTAACAAAGC</genome_strand>
        <mrna_strand>TGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGATCGTTTCTCATGTCCCCAAATTCACTTTTTATTTATAAATGCTTTTAACAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E245377" ref_strand="+" ref_description="SGN-E245377 [cLEF-53-J10]">
      <seq>caattcgctcatctgtatccactagctggtgctctaaaatcattccccgaggaggacgaatcgtttgcgaagctcatgataccgccgtggaagtggctactgttagtgataaaacatggaagacacttgtagttgagtctactgtacctgtactggttgaattttgggctccgtggtgtggtccatgccgaatgatccaccccgtcattgatgaactagcgaaggaatatgttggcaagcttacatgcttaaagctgaacacagatgaaagtccttccattgcaaccgaatttggaatccgaagcatcccaaccgtgatgatattcaagaatggagagaagaaagatgcaatcattggtgcagttcctaaatcaacacttaccaccttcatagaaaaattcttgtaaaatgttgcatatatagatatattatctgggaatttactcgtattattccctttcaccctctagtgcggcgatggtttaagtaaaccagtaatgctcctgtttagttgggttgcattgtgtgtttccccttacttaaacgttacgttgatcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70618" stop="67863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70318" g_stop="70226" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="68630" i_length="1596">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68629" g_stop="68163" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="560" r_length="467" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E245377" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70318" e_stop="70226"/>
          <exon e_start="68629" e_stop="68163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAGGTATTTTGTAACTGAAAGTATTTGTTACTACTCTTTATATTGAAATTCTCCATGCTCCTTTATGCCTTAGCTGAAAACTCAGTTCCAGGAAATTGAATTGTGTTAACGGTGGAAGTTTCTACTATTAAGATGAGTTAATTTTTAGTTTCATCTGTTCTAAATAGATAATAAGTTCTCATAGTAATAGTAATAACTTGAGTTATTTCGCATTCAAGGTATATTTACTTGGAATGGGAAATGAAATCTGTGAACAATATGTGTGTCTTTCCTTGTATTCTGCTTGTGAGTATCGGTATTTTGGTGTTGGTTACTTTGCTTGCCTAATTTCCTTATTAATTGAATTAGATTTATGTAGTGTGCGAGAGTTGGTAGATTTGAGAACAGAGTATGCTTTATATTTTCCTTGAATAGTGAGCTGGTGTTTGTCATTTATTACTCTCTCAGTTGAAATGTTGAACATTTGGATACTTTCCGTAGAAAGAGAGGGAAGAAAATGCTCAAGTTTTGTGTTTTCTCTTCCCTCGTGTTTAAATCCTGATACATCGAAGGCAAGTAAGAGCCTCAAAGTTGCCGTTTGTTGTTTTGTGCACATAGCTAATAACTTTGGATTAGCTCTCAGGTCAGTATAACTGGAATTTGTCCCGGAAAACCACTAGTAATATGTCGATTACTTGTGTTAGATGTCCTTTAGGAGTCTTAGAGACAAGAATAATGTTGTGATACTCTGCGAAAGAGAAGAAAGGAAACAAGAGAATGCAAAACATTTGAAACATCCTTCGTGTAAAAATATTGGGAACATCGTTCATGTGCTCCTTCACCTTTCACAACCACCTGACATCTCCCACAAGACCCTTGTAATGTTCCCTGCGCTAAGCTCTTCCATAGTTCCTCTTGTTTGCTTGTTTACTTTGTTTCCTTTTCTATTGGAAATAGTATGTTAGGTGCATGTAATGGTTTGCATCCTACTGCAGTTAATAGCATTGTATGCATGGTATTTAAGTGGAGAAGGGCAGTGGGTGGGTTTATATCCACGAAATTTTGAACCATGCGCCACTGACTCTTGGGCATTTCTCAGCTATAAAAAGAACTATGTTGGTCTGTGCTCTTTAACAATTTATATAAGCGAACTAGTTTGTCAAGACAATAAGCTCAATAAAGTGTAAAAGATGTCATTGGGCCGCTATGGTATAATACCCTCAAAGCTTTGTTGCTTTCATAGTTTCACTTACCTGCTAAGAATTCATTGAATATTGGTTGCTAGCATGTGAAGCTACTGCCTAAACATTGTTGGTCATATCAGTGCTTCCTTTGCCTTGCGGAATCTTCATGTTTCACCATGGCTTAAGACCTTTTGTGTGAGATGTAGATGTTGCACCAGTTATGTACTTATATTAGCCATGGTTAGTTGGGAAAATGGGAAGTTCTGTTGTCAACTTTTCTCTTTAGCTTCCATAATATGATTAGTTTTTTTAAAGAATTGGATACACAACCTTTTCCTGTCTAGTTAATTGTGGAGAGAATTGCTGTTGTAGATTTCTCATTAATCATTATAGTTAGCATCATTTGCTGGTTTAACACAGTTCTTGGAAATTGCAGTGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGATCGTT</genome_strand>
        <mrna_strand>CAATTCGCTCATCTGTATCCACTAGCTGGTGCTCTAAAATCATTCCCCGAGGAGGACGAATCGTTTGCGAAGCTCATGATACCGCCGTGGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTTCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTTTAGTTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGATCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E373681" ref_strand="+" ref_description="SGN-E373681 [TUS-33-E22]">
      <seq>acacacactctctatctctctcttctctttccatggctgctgtgttggaaaccattacagtcccacgcgcatcggcgctgccgtcgtcatcgcttgctcaggtcgccggttattccttctccggtcctcgtttctctgttagcttctctcaattcagcggccttaagatccagccaattcgctcatctgtatccactagctcatgctctaaaatcattccccgaggaggacgagtcgtttgcgaagctcaggataccgccgtggaagtggctactgttagtgataaaacatggaagacacttgtagttgagtctactgtacctgtactggttgaattttgggctccgtggtgtggtccatgccgaatgatccaccccgtcattgatgaactagcgaaggaatatgttggcaagcttacatgcttaaagctgaacacagatgaaagtccttccattgcaaccgaatttggaatccgaagcatcccaaccgtgatgatattcaagaatggagagaagaaagatgcaatcattggtgcagttcctaaatcaacacttaccacctccatagaaaaattcttgtaaaatgttgcatatatagatatattatctgggaatttactcgtattattccctttcaccctctagtgcggcgatggtttaagtaaaccagtaatgctcctgtatagtttgggttgcattgtgtgtttccccttactttaacgttacgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70792" stop="67867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70492" g_stop="70226" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="68630" i_length="1596">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68629" g_stop="68167" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="731" r_length="464" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E373681" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70492" e_stop="70226"/>
          <exon e_start="68629" e_stop="68167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACACTCTCTATCTCTCTCTTCTCTTTCCATGGCTGCTGTGTTGGAAACCATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAGGTATTTTGTAACTGAAAGTATTTGTTACTACTCTTTATATTGAAATTCTCCATGCTCCTTTATGCCTTAGCTGAAAACTCAGTTCCAGGAAATTGAATTGTGTTAACGGTGGAAGTTTCTACTATTAAGATGAGTTAATTTTTAGTTTCATCTGTTCTAAATAGATAATAAGTTCTCATAGTAATAGTAATAACTTGAGTTATTTCGCATTCAAGGTATATTTACTTGGAATGGGAAATGAAATCTGTGAACAATATGTGTGTCTTTCCTTGTATTCTGCTTGTGAGTATCGGTATTTTGGTGTTGGTTACTTTGCTTGCCTAATTTCCTTATTAATTGAATTAGATTTATGTAGTGTGCGAGAGTTGGTAGATTTGAGAACAGAGTATGCTTTATATTTTCCTTGAATAGTGAGCTGGTGTTTGTCATTTATTACTCTCTCAGTTGAAATGTTGAACATTTGGATACTTTCCGTAGAAAGAGAGGGAAGAAAATGCTCAAGTTTTGTGTTTTCTCTTCCCTCGTGTTTAAATCCTGATACATCGAAGGCAAGTAAGAGCCTCAAAGTTGCCGTTTGTTGTTTTGTGCACATAGCTAATAACTTTGGATTAGCTCTCAGGTCAGTATAACTGGAATTTGTCCCGGAAAACCACTAGTAATATGTCGATTACTTGTGTTAGATGTCCTTTAGGAGTCTTAGAGACAAGAATAATGTTGTGATACTCTGCGAAAGAGAAGAAAGGAAACAAGAGAATGCAAAACATTTGAAACATCCTTCGTGTAAAAATATTGGGAACATCGTTCATGTGCTCCTTCACCTTTCACAACCACCTGACATCTCCCACAAGACCCTTGTAATGTTCCCTGCGCTAAGCTCTTCCATAGTTCCTCTTGTTTGCTTGTTTACTTTGTTTCCTTTTCTATTGGAAATAGTATGTTAGGTGCATGTAATGGTTTGCATCCTACTGCAGTTAATAGCATTGTATGCATGGTATTTAAGTGGAGAAGGGCAGTGGGTGGGTTTATATCCACGAAATTTTGAACCATGCGCCACTGACTCTTGGGCATTTCTCAGCTATAAAAAGAACTATGTTGGTCTGTGCTCTTTAACAATTTATATAAGCGAACTAGTTTGTCAAGACAATAAGCTCAATAAAGTGTAAAAGATGTCATTGGGCCGCTATGGTATAATACCCTCAAAGCTTTGTTGCTTTCATAGTTTCACTTACCTGCTAAGAATTCATTGAATATTGGTTGCTAGCATGTGAAGCTACTGCCTAAACATTGTTGGTCATATCAGTGCTTCCTTTGCCTTGCGGAATCTTCATGTTTCACCATGGCTTAAGACCTTTTGTGTGAGATGTAGATGTTGCACCAGTTATGTACTTATATTAGCCATGGTTAGTTGGGAAAATGGGAAGTTCTGTTGTCAACTTTTCTCTTTAGCTTCCATAATATGATTAGTTTTTTTAAAGAATTGGATACACAACCTTTTCCTGTCTAGTTAATTGTGGAGAGAATTGCTGTTGTAGATTTCTCATTAATCATTATAGTTAGCATCATTTGCTGGTTTAACACAGTTCTTGGAAATTGCAGTGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAG-TTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGAT</genome_strand>
        <mrna_strand>ACACACACTCTCTATCTCTCTCTTCTCTTTCCATGGCTGCTGTGTTGGAAACCATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTTGGGTTGCATTGTGTGTTTCCCCTTACTTTAACGTTACGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E344204" ref_strand="+" ref_description="SGN-E344204 [cTOF-16-N7]">
      <seq>tctctatctctctcttctctttcatggctgctgtgttggaaaccattacagtcccacgcgcatcggcgctgccgtcgtcatcgcttgctcaggtcgccggttattccttctccggtcctcgtttctctgttagcttctctcaattcagcggccttaagatccagccaattcgctcatctgtatccactagctcatgctctaaaatcattccccgaggaggacgagtcgtttgcgaagctcaggataccgccgtggaagtggctactgttagtgataaaacatggaagacacttgtagttgagtctactgtacctgtactggttgaattttgggctccgtggtgtggtccatgccgaatgatccaccccgtcattgatgaactagcgaaggaatatgttggcaagcttacatgcttaaagctgaacacagatgaaagtccttccattgcaaccgaatttggaatccgaagcatcccaaccgtgatgatattcaagaatggagagaagaaagatgcaatcattggtgcagttcctaaatcaacacttaccacctccatagaaaaattcttgtaaaatgttgcatatatagatatattatctgggaatttactcgtattattccctttcaccctctagtgcggcgatggtttaagtaaaccagtaatgctcctgtatagntgggttgcattgtgtgtttccccttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70784" stop="67884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70484" g_stop="70226" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="68630" i_length="1596">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68629" g_stop="68184" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="704" r_length="446" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E344204" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70484" e_stop="70226"/>
          <exon e_start="68629" e_stop="68184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTATCTCTCTCTTCTCTTTCCATGGCTGCTGTGTTGGAAACCATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAGGTATTTTGTAACTGAAAGTATTTGTTACTACTCTTTATATTGAAATTCTCCATGCTCCTTTATGCCTTAGCTGAAAACTCAGTTCCAGGAAATTGAATTGTGTTAACGGTGGAAGTTTCTACTATTAAGATGAGTTAATTTTTAGTTTCATCTGTTCTAAATAGATAATAAGTTCTCATAGTAATAGTAATAACTTGAGTTATTTCGCATTCAAGGTATATTTACTTGGAATGGGAAATGAAATCTGTGAACAATATGTGTGTCTTTCCTTGTATTCTGCTTGTGAGTATCGGTATTTTGGTGTTGGTTACTTTGCTTGCCTAATTTCCTTATTAATTGAATTAGATTTATGTAGTGTGCGAGAGTTGGTAGATTTGAGAACAGAGTATGCTTTATATTTTCCTTGAATAGTGAGCTGGTGTTTGTCATTTATTACTCTCTCAGTTGAAATGTTGAACATTTGGATACTTTCCGTAGAAAGAGAGGGAAGAAAATGCTCAAGTTTTGTGTTTTCTCTTCCCTCGTGTTTAAATCCTGATACATCGAAGGCAAGTAAGAGCCTCAAAGTTGCCGTTTGTTGTTTTGTGCACATAGCTAATAACTTTGGATTAGCTCTCAGGTCAGTATAACTGGAATTTGTCCCGGAAAACCACTAGTAATATGTCGATTACTTGTGTTAGATGTCCTTTAGGAGTCTTAGAGACAAGAATAATGTTGTGATACTCTGCGAAAGAGAAGAAAGGAAACAAGAGAATGCAAAACATTTGAAACATCCTTCGTGTAAAAATATTGGGAACATCGTTCATGTGCTCCTTCACCTTTCACAACCACCTGACATCTCCCACAAGACCCTTGTAATGTTCCCTGCGCTAAGCTCTTCCATAGTTCCTCTTGTTTGCTTGTTTACTTTGTTTCCTTTTCTATTGGAAATAGTATGTTAGGTGCATGTAATGGTTTGCATCCTACTGCAGTTAATAGCATTGTATGCATGGTATTTAAGTGGAGAAGGGCAGTGGGTGGGTTTATATCCACGAAATTTTGAACCATGCGCCACTGACTCTTGGGCATTTCTCAGCTATAAAAAGAACTATGTTGGTCTGTGCTCTTTAACAATTTATATAAGCGAACTAGTTTGTCAAGACAATAAGCTCAATAAAGTGTAAAAGATGTCATTGGGCCGCTATGGTATAATACCCTCAAAGCTTTGTTGCTTTCATAGTTTCACTTACCTGCTAAGAATTCATTGAATATTGGTTGCTAGCATGTGAAGCTACTGCCTAAACATTGTTGGTCATATCAGTGCTTCCTTTGCCTTGCGGAATCTTCATGTTTCACCATGGCTTAAGACCTTTTGTGTGAGATGTAGATGTTGCACCAGTTATGTACTTATATTAGCCATGGTTAGTTGGGAAAATGGGAAGTTCTGTTGTCAACTTTTCTCTTTAGCTTCCATAATATGATTAGTTTTTTTAAAGAATTGGATACACAACCTTTTCCTGTCTAGTTAATTGTGGAGAGAATTGCTGTTGTAGATTTCTCATTAATCATTATAGTTAGCATCATTTGCTGGTTTAACACAGTTCTTGGAAATTGCAGTGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGTGTGTTTCCCCTTAC</genome_strand>
        <mrna_strand>TCTCTATCTCTCTCTTCTCTTT-CATGGCTGCTGTGTTGGAAACCATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGNTGGGTTGCATTGTGTGTTTCCCCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E347369" ref_strand="+" ref_description="SGN-E347369 [cTOF-33-B16]">
      <seq>cactctctatctctctcttctctttcatggctgctgtgttggaaaccattacagtcccacgcgcatcggcgctgccgtcgtcatcgcttgctcaggtcgccggttattccttctccggtcctcgtttctctgttagcttctctcaattcagcggccttaagatccagccaattcgctcatctgtatccactagctcatgctctaaaatcattccccgaggaggacgagtcgtttgcgaagctcaggataccgccgtggaagtggctactgttagtgataaaacatggaagacacttgtagttgagtctactgtacctgtactggttgaattttgggctccgtggtgtggtccatgccgaatgatccaccccgtcattgatgaactagcgaaggaatatgttggcaagcttacatgcttaaagctgaacacagatgaaagtccttccattgcaaccgaatttggaatccgaagcatcccaaccgtgatgatattcaagaatggagagaagaaagatgcaatcattggtgcagttcctaaatcaacacttaccacctccatagaaaaattcttgtaaaatgttgcatatatagatatattatctgggaatttactcgtattattccctttcaccctctagtgcggcgatggtttaagtaaaccagtaatgctcctgtatagntgggttgcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70787" stop="67900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70487" g_stop="70226" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="68630" i_length="1596">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68629" g_stop="68199" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="692" r_length="431" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E347369" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70487" e_stop="70226"/>
          <exon e_start="68629" e_stop="68199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTCTATCTCTCTCTTCTCTTTCCATGGCTGCTGTGTTGGAAACCATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAGGTATTTTGTAACTGAAAGTATTTGTTACTACTCTTTATATTGAAATTCTCCATGCTCCTTTATGCCTTAGCTGAAAACTCAGTTCCAGGAAATTGAATTGTGTTAACGGTGGAAGTTTCTACTATTAAGATGAGTTAATTTTTAGTTTCATCTGTTCTAAATAGATAATAAGTTCTCATAGTAATAGTAATAACTTGAGTTATTTCGCATTCAAGGTATATTTACTTGGAATGGGAAATGAAATCTGTGAACAATATGTGTGTCTTTCCTTGTATTCTGCTTGTGAGTATCGGTATTTTGGTGTTGGTTACTTTGCTTGCCTAATTTCCTTATTAATTGAATTAGATTTATGTAGTGTGCGAGAGTTGGTAGATTTGAGAACAGAGTATGCTTTATATTTTCCTTGAATAGTGAGCTGGTGTTTGTCATTTATTACTCTCTCAGTTGAAATGTTGAACATTTGGATACTTTCCGTAGAAAGAGAGGGAAGAAAATGCTCAAGTTTTGTGTTTTCTCTTCCCTCGTGTTTAAATCCTGATACATCGAAGGCAAGTAAGAGCCTCAAAGTTGCCGTTTGTTGTTTTGTGCACATAGCTAATAACTTTGGATTAGCTCTCAGGTCAGTATAACTGGAATTTGTCCCGGAAAACCACTAGTAATATGTCGATTACTTGTGTTAGATGTCCTTTAGGAGTCTTAGAGACAAGAATAATGTTGTGATACTCTGCGAAAGAGAAGAAAGGAAACAAGAGAATGCAAAACATTTGAAACATCCTTCGTGTAAAAATATTGGGAACATCGTTCATGTGCTCCTTCACCTTTCACAACCACCTGACATCTCCCACAAGACCCTTGTAATGTTCCCTGCGCTAAGCTCTTCCATAGTTCCTCTTGTTTGCTTGTTTACTTTGTTTCCTTTTCTATTGGAAATAGTATGTTAGGTGCATGTAATGGTTTGCATCCTACTGCAGTTAATAGCATTGTATGCATGGTATTTAAGTGGAGAAGGGCAGTGGGTGGGTTTATATCCACGAAATTTTGAACCATGCGCCACTGACTCTTGGGCATTTCTCAGCTATAAAAAGAACTATGTTGGTCTGTGCTCTTTAACAATTTATATAAGCGAACTAGTTTGTCAAGACAATAAGCTCAATAAAGTGTAAAAGATGTCATTGGGCCGCTATGGTATAATACCCTCAAAGCTTTGTTGCTTTCATAGTTTCACTTACCTGCTAAGAATTCATTGAATATTGGTTGCTAGCATGTGAAGCTACTGCCTAAACATTGTTGGTCATATCAGTGCTTCCTTTGCCTTGCGGAATCTTCATGTTTCACCATGGCTTAAGACCTTTTGTGTGAGATGTAGATGTTGCACCAGTTATGTACTTATATTAGCCATGGTTAGTTGGGAAAATGGGAAGTTCTGTTGTCAACTTTTCTCTTTAGCTTCCATAATATGATTAGTTTTTTTAAAGAATTGGATACACAACCTTTTCCTGTCTAGTTAATTGTGGAGAGAATTGCTGTTGTAGATTTCTCATTAATCATTATAGTTAGCATCATTTGCTGGTTTAACACAGTTCTTGGAAATTGCAGTGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTG</genome_strand>
        <mrna_strand>CACTCTCTATCTCTCTCTTCTCTTT-CATGGCTGCTGTGTTGGAAACCATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGNTGGGTTGCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E345940" ref_strand="+" ref_description="SGN-E345940 [cTOF-24-D12]">
      <seq>ttggaaacattacagtcccacgcgcatcggcgctgccgtcgtcatcgcttgctcaggtcgccggttattccttctccggtcctcgtttctctgttagcttctctcaattcagcggccttaagatccagccaattcgctcatctgtatccactagctcatgctctaaaatcattccccgaggaggacgagtcgtttgcgaagctcaggataccgccgtggaagtggctactgttagtgataaaacatggaagacacttgtagttgagtctactgtacctgtactggttgaattttgggctccgtggtgtggtccatgccgaatgatccaccccgtcattgatgaactagcgaaggaatatgttggcaagcttacatgcttaaagctgaacacagatgaaagtccttccattgcaaccgaatttggaatccgaagcatcccaaccgtgatgatattcaagaatggagagaagaaagatgcaatcattggtgcagttcctaaatcaacacttaccacctccatagaaaaattcttgtaaaatgttgcatatatagatatattatctgggaatttactcgtattattccctttcaccctctagtgcggngatggtttaagtaaaccagtaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70748" stop="67922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70448" g_stop="70226" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="68630" i_length="1596">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68629" g_stop="68222" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="630" r_length="408" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E345940" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70448" e_stop="70226"/>
          <exon e_start="68629" e_stop="68222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAAACCATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAGGTATTTTGTAACTGAAAGTATTTGTTACTACTCTTTATATTGAAATTCTCCATGCTCCTTTATGCCTTAGCTGAAAACTCAGTTCCAGGAAATTGAATTGTGTTAACGGTGGAAGTTTCTACTATTAAGATGAGTTAATTTTTAGTTTCATCTGTTCTAAATAGATAATAAGTTCTCATAGTAATAGTAATAACTTGAGTTATTTCGCATTCAAGGTATATTTACTTGGAATGGGAAATGAAATCTGTGAACAATATGTGTGTCTTTCCTTGTATTCTGCTTGTGAGTATCGGTATTTTGGTGTTGGTTACTTTGCTTGCCTAATTTCCTTATTAATTGAATTAGATTTATGTAGTGTGCGAGAGTTGGTAGATTTGAGAACAGAGTATGCTTTATATTTTCCTTGAATAGTGAGCTGGTGTTTGTCATTTATTACTCTCTCAGTTGAAATGTTGAACATTTGGATACTTTCCGTAGAAAGAGAGGGAAGAAAATGCTCAAGTTTTGTGTTTTCTCTTCCCTCGTGTTTAAATCCTGATACATCGAAGGCAAGTAAGAGCCTCAAAGTTGCCGTTTGTTGTTTTGTGCACATAGCTAATAACTTTGGATTAGCTCTCAGGTCAGTATAACTGGAATTTGTCCCGGAAAACCACTAGTAATATGTCGATTACTTGTGTTAGATGTCCTTTAGGAGTCTTAGAGACAAGAATAATGTTGTGATACTCTGCGAAAGAGAAGAAAGGAAACAAGAGAATGCAAAACATTTGAAACATCCTTCGTGTAAAAATATTGGGAACATCGTTCATGTGCTCCTTCACCTTTCACAACCACCTGACATCTCCCACAAGACCCTTGTAATGTTCCCTGCGCTAAGCTCTTCCATAGTTCCTCTTGTTTGCTTGTTTACTTTGTTTCCTTTTCTATTGGAAATAGTATGTTAGGTGCATGTAATGGTTTGCATCCTACTGCAGTTAATAGCATTGTATGCATGGTATTTAAGTGGAGAAGGGCAGTGGGTGGGTTTATATCCACGAAATTTTGAACCATGCGCCACTGACTCTTGGGCATTTCTCAGCTATAAAAAGAACTATGTTGGTCTGTGCTCTTTAACAATTTATATAAGCGAACTAGTTTGTCAAGACAATAAGCTCAATAAAGTGTAAAAGATGTCATTGGGCCGCTATGGTATAATACCCTCAAAGCTTTGTTGCTTTCATAGTTTCACTTACCTGCTAAGAATTCATTGAATATTGGTTGCTAGCATGTGAAGCTACTGCCTAAACATTGTTGGTCATATCAGTGCTTCCTTTGCCTTGCGGAATCTTCATGTTTCACCATGGCTTAAGACCTTTTGTGTGAGATGTAGATGTTGCACCAGTTATGTACTTATATTAGCCATGGTTAGTTGGGAAAATGGGAAGTTCTGTTGTCAACTTTTCTCTTTAGCTTCCATAATATGATTAGTTTTTTTAAAGAATTGGATACACAACCTTTTCCTGTCTAGTTAATTGTGGAGAGAATTGCTGTTGTAGATTTCTCATTAATCATTATAGTTAGCATCATTTGCTGGTTTAACACAGTTCTTGGAAATTGCAGTGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGC</genome_strand>
        <mrna_strand>TTGGAAA-CATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGNGATGGTTTAAGTAAACCAGTAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E299444" ref_strand="+" ref_description="SGN-E299444 [cLET-43-J21]">
      <seq>gtcgccggttattccttctccggtcctcgtttctctgttagcttctctcaattcagcggccttaagatccagccaattcgctcatctgtatccactagctcatgctctaaaatcattccccgaggaggacgagtcgtttgcgaagctcaggataccgccgtggaagtggctactgttagtgataaaacatggaagacacttgtagttgagtctactgtacctgtactggttgaattttgggctccgtggtgtggtccatgccgaatgatccaccccgtcattgatgaactagcgaaggaatatgttggcaagcttacatgcttaaagctgaacacagatgaaagtccttccattgcaaccgaatttggaatccgaagcatcccaaccgtgatgatattcaagaatggagagaagaaagatgcaatcattggtgcagttcctaaatcaacacttaccacctccatagaaaaattcttgtgaaatgttgcatatatagatatattatctgggaatttactcgtattattccctttcaccctctagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70691" stop="67952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70391" g_stop="70226" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="68630" i_length="1596">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68629" g_stop="68252" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="544" r_length="378" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E299444" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70391" e_stop="70226"/>
          <exon e_start="68629" e_stop="68252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAGGTATTTTGTAACTGAAAGTATTTGTTACTACTCTTTATATTGAAATTCTCCATGCTCCTTTATGCCTTAGCTGAAAACTCAGTTCCAGGAAATTGAATTGTGTTAACGGTGGAAGTTTCTACTATTAAGATGAGTTAATTTTTAGTTTCATCTGTTCTAAATAGATAATAAGTTCTCATAGTAATAGTAATAACTTGAGTTATTTCGCATTCAAGGTATATTTACTTGGAATGGGAAATGAAATCTGTGAACAATATGTGTGTCTTTCCTTGTATTCTGCTTGTGAGTATCGGTATTTTGGTGTTGGTTACTTTGCTTGCCTAATTTCCTTATTAATTGAATTAGATTTATGTAGTGTGCGAGAGTTGGTAGATTTGAGAACAGAGTATGCTTTATATTTTCCTTGAATAGTGAGCTGGTGTTTGTCATTTATTACTCTCTCAGTTGAAATGTTGAACATTTGGATACTTTCCGTAGAAAGAGAGGGAAGAAAATGCTCAAGTTTTGTGTTTTCTCTTCCCTCGTGTTTAAATCCTGATACATCGAAGGCAAGTAAGAGCCTCAAAGTTGCCGTTTGTTGTTTTGTGCACATAGCTAATAACTTTGGATTAGCTCTCAGGTCAGTATAACTGGAATTTGTCCCGGAAAACCACTAGTAATATGTCGATTACTTGTGTTAGATGTCCTTTAGGAGTCTTAGAGACAAGAATAATGTTGTGATACTCTGCGAAAGAGAAGAAAGGAAACAAGAGAATGCAAAACATTTGAAACATCCTTCGTGTAAAAATATTGGGAACATCGTTCATGTGCTCCTTCACCTTTCACAACCACCTGACATCTCCCACAAGACCCTTGTAATGTTCCCTGCGCTAAGCTCTTCCATAGTTCCTCTTGTTTGCTTGTTTACTTTGTTTCCTTTTCTATTGGAAATAGTATGTTAGGTGCATGTAATGGTTTGCATCCTACTGCAGTTAATAGCATTGTATGCATGGTATTTAAGTGGAGAAGGGCAGTGGGTGGGTTTATATCCACGAAATTTTGAACCATGCGCCACTGACTCTTGGGCATTTCTCAGCTATAAAAAGAACTATGTTGGTCTGTGCTCTTTAACAATTTATATAAGCGAACTAGTTTGTCAAGACAATAAGCTCAATAAAGTGTAAAAGATGTCATTGGGCCGCTATGGTATAATACCCTCAAAGCTTTGTTGCTTTCATAGTTTCACTTACCTGCTAAGAATTCATTGAATATTGGTTGCTAGCATGTGAAGCTACTGCCTAAACATTGTTGGTCATATCAGTGCTTCCTTTGCCTTGCGGAATCTTCATGTTTCACCATGGCTTAAGACCTTTTGTGTGAGATGTAGATGTTGCACCAGTTATGTACTTATATTAGCCATGGTTAGTTGGGAAAATGGGAAGTTCTGTTGTCAACTTTTCTCTTTAGCTTCCATAATATGATTAGTTTTTTTAAAGAATTGGATACACAACCTTTTCCTGTCTAGTTAATTGTGGAGAGAATTGCTGTTGTAGATTTCTCATTAATCATTATAGTTAGCATCATTTGCTGGTTTAACACAGTTCTTGGAAATTGCAGTGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGT</genome_strand>
        <mrna_strand>GTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTGAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E278989" ref_strand="+" ref_description="SGN-E278989 [cLER-2-P19]">
      <seq>ttctccggtcctcgtttctctgttagcttctctcaattcagcggccttaagatccagccaattcgctcatctgtatccactagctcatgctctaaaatcattccccgaggaggacgagtcgtttgcgaagctcaggataccgccgtggaagtggctactgttagtgataaaacatggaagacacttgtagttgagtctactgtacctgtactggttgaattttgggctccgtggtgtggtccatgccgaatgatccaccccgtcattgatgaactagcgaaggaatatgttggcaagcttacatgcttaaagctgaacacagatgaaagtccttccattgcaaccgaatttggaatccgaagcatcccaaccgtgatgatattcaagaatggagagaagaaagatgcaatcattggtgcagttcctaaatcaacacttaccacctccatagaaaaattctggtaaaatgttgcatatatagatatattatctgggaatttactcgtattattccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70676" stop="67964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70376" g_stop="70226" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="68630" i_length="1596">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68629" g_stop="68264" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="517" r_length="366" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E278989" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70376" e_stop="70226"/>
          <exon e_start="68629" e_stop="68264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAGGTATTTTGTAACTGAAAGTATTTGTTACTACTCTTTATATTGAAATTCTCCATGCTCCTTTATGCCTTAGCTGAAAACTCAGTTCCAGGAAATTGAATTGTGTTAACGGTGGAAGTTTCTACTATTAAGATGAGTTAATTTTTAGTTTCATCTGTTCTAAATAGATAATAAGTTCTCATAGTAATAGTAATAACTTGAGTTATTTCGCATTCAAGGTATATTTACTTGGAATGGGAAATGAAATCTGTGAACAATATGTGTGTCTTTCCTTGTATTCTGCTTGTGAGTATCGGTATTTTGGTGTTGGTTACTTTGCTTGCCTAATTTCCTTATTAATTGAATTAGATTTATGTAGTGTGCGAGAGTTGGTAGATTTGAGAACAGAGTATGCTTTATATTTTCCTTGAATAGTGAGCTGGTGTTTGTCATTTATTACTCTCTCAGTTGAAATGTTGAACATTTGGATACTTTCCGTAGAAAGAGAGGGAAGAAAATGCTCAAGTTTTGTGTTTTCTCTTCCCTCGTGTTTAAATCCTGATACATCGAAGGCAAGTAAGAGCCTCAAAGTTGCCGTTTGTTGTTTTGTGCACATAGCTAATAACTTTGGATTAGCTCTCAGGTCAGTATAACTGGAATTTGTCCCGGAAAACCACTAGTAATATGTCGATTACTTGTGTTAGATGTCCTTTAGGAGTCTTAGAGACAAGAATAATGTTGTGATACTCTGCGAAAGAGAAGAAAGGAAACAAGAGAATGCAAAACATTTGAAACATCCTTCGTGTAAAAATATTGGGAACATCGTTCATGTGCTCCTTCACCTTTCACAACCACCTGACATCTCCCACAAGACCCTTGTAATGTTCCCTGCGCTAAGCTCTTCCATAGTTCCTCTTGTTTGCTTGTTTACTTTGTTTCCTTTTCTATTGGAAATAGTATGTTAGGTGCATGTAATGGTTTGCATCCTACTGCAGTTAATAGCATTGTATGCATGGTATTTAAGTGGAGAAGGGCAGTGGGTGGGTTTATATCCACGAAATTTTGAACCATGCGCCACTGACTCTTGGGCATTTCTCAGCTATAAAAAGAACTATGTTGGTCTGTGCTCTTTAACAATTTATATAAGCGAACTAGTTTGTCAAGACAATAAGCTCAATAAAGTGTAAAAGATGTCATTGGGCCGCTATGGTATAATACCCTCAAAGCTTTGTTGCTTTCATAGTTTCACTTACCTGCTAAGAATTCATTGAATATTGGTTGCTAGCATGTGAAGCTACTGCCTAAACATTGTTGGTCATATCAGTGCTTCCTTTGCCTTGCGGAATCTTCATGTTTCACCATGGCTTAAGACCTTTTGTGTGAGATGTAGATGTTGCACCAGTTATGTACTTATATTAGCCATGGTTAGTTGGGAAAATGGGAAGTTCTGTTGTCAACTTTTCTCTTTAGCTTCCATAATATGATTAGTTTTTTTAAAGAATTGGATACACAACCTTTTCCTGTCTAGTTAATTGTGGAGAGAATTGCTGTTGTAGATTTCTCATTAATCATTATAGTTAGCATCATTTGCTGGTTTAACACAGTTCTTGGAAATTGCAGTGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTT</genome_strand>
        <mrna_strand>TTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTGGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E733165" ref_strand="+" ref_description="SGN-E733165 [LB04AF02]">
      <seq>catacactctctatctctctcttctctttccatggctgctgtgttggaaaccattacagtcccacgcgcatcggcgctgccgtcgtcatcgcttgctcaggtcgccggttattccttctccggtcctcgtttctctgttagcttctctcaattcagcggccttaagatccagccaattcgctcatctgtatccactagctcatgctctaaaatcattccccgaggaggacgagtcgtttgcgaagctcaggataccgccgtggaagtggctactgttagtgataaaacatggaagacacttgtagttgagtctactgtacctgtactggttgaattttgggctccgtggtgtggtccatgccgaatgatccaccccgtcattgatgaactagcgaaggaatatgttggcaagcttacatgcttaaagctgaacacagatgaaagtccttccattgcaaccgaatttggaatccgaagcatcccaaccgtgatgatattcaagaatggagagaagaaagatgcaatcattggtgcagttcctaaatcaacacttaccacctccatagaaaaattcttgtaaaatgttgcatatatagatatattatctgggaaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70791" stop="67980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70491" g_stop="70226" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="68630" i_length="1596">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68629" g_stop="68272" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="624" r_length="358" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E733165" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70491" e_stop="70226"/>
          <exon e_start="68629" e_stop="68272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACACTCTCTATCTCTCTCTTCTCTTTCCATGGCTGCTGTGTTGGAAACCATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAGGTATTTTGTAACTGAAAGTATTTGTTACTACTCTTTATATTGAAATTCTCCATGCTCCTTTATGCCTTAGCTGAAAACTCAGTTCCAGGAAATTGAATTGTGTTAACGGTGGAAGTTTCTACTATTAAGATGAGTTAATTTTTAGTTTCATCTGTTCTAAATAGATAATAAGTTCTCATAGTAATAGTAATAACTTGAGTTATTTCGCATTCAAGGTATATTTACTTGGAATGGGAAATGAAATCTGTGAACAATATGTGTGTCTTTCCTTGTATTCTGCTTGTGAGTATCGGTATTTTGGTGTTGGTTACTTTGCTTGCCTAATTTCCTTATTAATTGAATTAGATTTATGTAGTGTGCGAGAGTTGGTAGATTTGAGAACAGAGTATGCTTTATATTTTCCTTGAATAGTGAGCTGGTGTTTGTCATTTATTACTCTCTCAGTTGAAATGTTGAACATTTGGATACTTTCCGTAGAAAGAGAGGGAAGAAAATGCTCAAGTTTTGTGTTTTCTCTTCCCTCGTGTTTAAATCCTGATACATCGAAGGCAAGTAAGAGCCTCAAAGTTGCCGTTTGTTGTTTTGTGCACATAGCTAATAACTTTGGATTAGCTCTCAGGTCAGTATAACTGGAATTTGTCCCGGAAAACCACTAGTAATATGTCGATTACTTGTGTTAGATGTCCTTTAGGAGTCTTAGAGACAAGAATAATGTTGTGATACTCTGCGAAAGAGAAGAAAGGAAACAAGAGAATGCAAAACATTTGAAACATCCTTCGTGTAAAAATATTGGGAACATCGTTCATGTGCTCCTTCACCTTTCACAACCACCTGACATCTCCCACAAGACCCTTGTAATGTTCCCTGCGCTAAGCTCTTCCATAGTTCCTCTTGTTTGCTTGTTTACTTTGTTTCCTTTTCTATTGGAAATAGTATGTTAGGTGCATGTAATGGTTTGCATCCTACTGCAGTTAATAGCATTGTATGCATGGTATTTAAGTGGAGAAGGGCAGTGGGTGGGTTTATATCCACGAAATTTTGAACCATGCGCCACTGACTCTTGGGCATTTCTCAGCTATAAAAAGAACTATGTTGGTCTGTGCTCTTTAACAATTTATATAAGCGAACTAGTTTGTCAAGACAATAAGCTCAATAAAGTGTAAAAGATGTCATTGGGCCGCTATGGTATAATACCCTCAAAGCTTTGTTGCTTTCATAGTTTCACTTACCTGCTAAGAATTCATTGAATATTGGTTGCTAGCATGTGAAGCTACTGCCTAAACATTGTTGGTCATATCAGTGCTTCCTTTGCCTTGCGGAATCTTCATGTTTCACCATGGCTTAAGACCTTTTGTGTGAGATGTAGATGTTGCACCAGTTATGTACTTATATTAGCCATGGTTAGTTGGGAAAATGGGAAGTTCTGTTGTCAACTTTTCTCTTTAGCTTCCATAATATGATTAGTTTTTTTAAAGAATTGGATACACAACCTTTTCCTGTCTAGTTAATTGTGGAGAGAATTGCTGTTGTAGATTTCTCATTAATCATTATAGTTAGCATCATTTGCTGGTTTAACACAGTTCTTGGAAATTGCAGTGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATT</genome_strand>
        <mrna_strand>CATACACTCTCTATCTCTCTCTTCTCTTTCCATGGCTGCTGTGTTGGAAACCATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E288730" ref_strand="+" ref_description="SGN-E288730 [cLES-8-D14]">
      <seq>acacacactctctatctctctcttctctttccatggctgctgtgttggaaaccattacagtcccacgcgcatcggcgctgccgtcgtcatcgcttgctcaggtcgccggttattccttctccggtcctcgtttctctgttagcttctctcaattcagcggccttaagatccagccaattcgctcatctgtatccactagctcatgctctaaaatcattccccgaggaggacgagtcgtttgcgaagctcaggataccgccgtggaagtggctactgttagtgataaaacatggaagacacttgtagttgagtctactgtacctgtactggttgaattttgggctccgtggtgtggtccatgccgaatgatccaccccgtcattgatgaactagcgaaggaatatgttggcaagcttacatgcttaaagctgaacacagatgaaagtccttccattgcaaccgaatttggaatccgaagcatcccaaccgtgatgatattcaagaatggagagaagaaagatgcaatcattggtgcagttcctaaatcaacacttacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70792" stop="68039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70492" g_stop="70226" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="68630" i_length="1596">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68629" g_stop="68339" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="558" r_length="291" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E288730" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70492" e_stop="70226"/>
          <exon e_start="68629" e_stop="68339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACACTCTCTATCTCTCTCTTCTCTTTCCATGGCTGCTGTGTTGGAAACCATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAGGTATTTTGTAACTGAAAGTATTTGTTACTACTCTTTATATTGAAATTCTCCATGCTCCTTTATGCCTTAGCTGAAAACTCAGTTCCAGGAAATTGAATTGTGTTAACGGTGGAAGTTTCTACTATTAAGATGAGTTAATTTTTAGTTTCATCTGTTCTAAATAGATAATAAGTTCTCATAGTAATAGTAATAACTTGAGTTATTTCGCATTCAAGGTATATTTACTTGGAATGGGAAATGAAATCTGTGAACAATATGTGTGTCTTTCCTTGTATTCTGCTTGTGAGTATCGGTATTTTGGTGTTGGTTACTTTGCTTGCCTAATTTCCTTATTAATTGAATTAGATTTATGTAGTGTGCGAGAGTTGGTAGATTTGAGAACAGAGTATGCTTTATATTTTCCTTGAATAGTGAGCTGGTGTTTGTCATTTATTACTCTCTCAGTTGAAATGTTGAACATTTGGATACTTTCCGTAGAAAGAGAGGGAAGAAAATGCTCAAGTTTTGTGTTTTCTCTTCCCTCGTGTTTAAATCCTGATACATCGAAGGCAAGTAAGAGCCTCAAAGTTGCCGTTTGTTGTTTTGTGCACATAGCTAATAACTTTGGATTAGCTCTCAGGTCAGTATAACTGGAATTTGTCCCGGAAAACCACTAGTAATATGTCGATTACTTGTGTTAGATGTCCTTTAGGAGTCTTAGAGACAAGAATAATGTTGTGATACTCTGCGAAAGAGAAGAAAGGAAACAAGAGAATGCAAAACATTTGAAACATCCTTCGTGTAAAAATATTGGGAACATCGTTCATGTGCTCCTTCACCTTTCACAACCACCTGACATCTCCCACAAGACCCTTGTAATGTTCCCTGCGCTAAGCTCTTCCATAGTTCCTCTTGTTTGCTTGTTTACTTTGTTTCCTTTTCTATTGGAAATAGTATGTTAGGTGCATGTAATGGTTTGCATCCTACTGCAGTTAATAGCATTGTATGCATGGTATTTAAGTGGAGAAGGGCAGTGGGTGGGTTTATATCCACGAAATTTTGAACCATGCGCCACTGACTCTTGGGCATTTCTCAGCTATAAAAAGAACTATGTTGGTCTGTGCTCTTTAACAATTTATATAAGCGAACTAGTTTGTCAAGACAATAAGCTCAATAAAGTGTAAAAGATGTCATTGGGCCGCTATGGTATAATACCCTCAAAGCTTTGTTGCTTTCATAGTTTCACTTACCTGCTAAGAATTCATTGAATATTGGTTGCTAGCATGTGAAGCTACTGCCTAAACATTGTTGGTCATATCAGTGCTTCCTTTGCCTTGCGGAATCTTCATGTTTCACCATGGCTTAAGACCTTTTGTGTGAGATGTAGATGTTGCACCAGTTATGTACTTATATTAGCCATGGTTAGTTGGGAAAATGGGAAGTTCTGTTGTCAACTTTTCTCTTTAGCTTCCATAATATGATTAGTTTTTTTAAAGAATTGGATACACAACCTTTTCCTGTCTAGTTAATTGTGGAGAGAATTGCTGTTGTAGATTTCTCATTAATCATTATAGTTAGCATCATTTGCTGGTTTAACACAGTTCTTGGAAATTGCAGTGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCA</genome_strand>
        <mrna_strand>ACACACACTCTCTATCTCTCTCTTCTCTTTCCATGGCTGCTGTGTTGGAAACCATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E326001" ref_strand="+" ref_description="SGN-E326001 [cTOD-1-M5]">
      <seq>tctctcttctctttccatggctgctgtgttggaaaccattacagtcccacgcgcatcggcgctgccgtcgtcatcgcttgctcaggtcgccggttattccttctccggtcctcgtttctctgttagcttctctcaattcagcggccttaagatccagccaattcgctcatctgtatccactagctcatgctctaaaatcattccccgaggaggacgagtcgtttgcgaagctcaggataccgccgtggaagtggctactgttagtgataaaacatggaagacacttgtagttgagtctactgtacctgtactggttgaattttgggctccgtggtgtggtccatgccgaatgatccaccccgtcattgatgaactagcgaaggaatatgttggcaagcttacatgcttaaagctgaacacagatgaaagtccttccattgcaaccgaatttggaatccgaagcatcccaaccgtgatgatattcaaaaatggagagaagaaagatgcaatcattggtgcagttcctaaatcaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70776" stop="68045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70476" g_stop="70226" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="68630" i_length="1596">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68629" g_stop="68345" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="536" r_length="285" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E326001" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70476" e_stop="70226"/>
          <exon e_start="68629" e_stop="68345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTTCTCTTTCCATGGCTGCTGTGTTGGAAACCATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAGGTATTTTGTAACTGAAAGTATTTGTTACTACTCTTTATATTGAAATTCTCCATGCTCCTTTATGCCTTAGCTGAAAACTCAGTTCCAGGAAATTGAATTGTGTTAACGGTGGAAGTTTCTACTATTAAGATGAGTTAATTTTTAGTTTCATCTGTTCTAAATAGATAATAAGTTCTCATAGTAATAGTAATAACTTGAGTTATTTCGCATTCAAGGTATATTTACTTGGAATGGGAAATGAAATCTGTGAACAATATGTGTGTCTTTCCTTGTATTCTGCTTGTGAGTATCGGTATTTTGGTGTTGGTTACTTTGCTTGCCTAATTTCCTTATTAATTGAATTAGATTTATGTAGTGTGCGAGAGTTGGTAGATTTGAGAACAGAGTATGCTTTATATTTTCCTTGAATAGTGAGCTGGTGTTTGTCATTTATTACTCTCTCAGTTGAAATGTTGAACATTTGGATACTTTCCGTAGAAAGAGAGGGAAGAAAATGCTCAAGTTTTGTGTTTTCTCTTCCCTCGTGTTTAAATCCTGATACATCGAAGGCAAGTAAGAGCCTCAAAGTTGCCGTTTGTTGTTTTGTGCACATAGCTAATAACTTTGGATTAGCTCTCAGGTCAGTATAACTGGAATTTGTCCCGGAAAACCACTAGTAATATGTCGATTACTTGTGTTAGATGTCCTTTAGGAGTCTTAGAGACAAGAATAATGTTGTGATACTCTGCGAAAGAGAAGAAAGGAAACAAGAGAATGCAAAACATTTGAAACATCCTTCGTGTAAAAATATTGGGAACATCGTTCATGTGCTCCTTCACCTTTCACAACCACCTGACATCTCCCACAAGACCCTTGTAATGTTCCCTGCGCTAAGCTCTTCCATAGTTCCTCTTGTTTGCTTGTTTACTTTGTTTCCTTTTCTATTGGAAATAGTATGTTAGGTGCATGTAATGGTTTGCATCCTACTGCAGTTAATAGCATTGTATGCATGGTATTTAAGTGGAGAAGGGCAGTGGGTGGGTTTATATCCACGAAATTTTGAACCATGCGCCACTGACTCTTGGGCATTTCTCAGCTATAAAAAGAACTATGTTGGTCTGTGCTCTTTAACAATTTATATAAGCGAACTAGTTTGTCAAGACAATAAGCTCAATAAAGTGTAAAAGATGTCATTGGGCCGCTATGGTATAATACCCTCAAAGCTTTGTTGCTTTCATAGTTTCACTTACCTGCTAAGAATTCATTGAATATTGGTTGCTAGCATGTGAAGCTACTGCCTAAACATTGTTGGTCATATCAGTGCTTCCTTTGCCTTGCGGAATCTTCATGTTTCACCATGGCTTAAGACCTTTTGTGTGAGATGTAGATGTTGCACCAGTTATGTACTTATATTAGCCATGGTTAGTTGGGAAAATGGGAAGTTCTGTTGTCAACTTTTCTCTTTAGCTTCCATAATATGATTAGTTTTTTTAAAGAATTGGATACACAACCTTTTCCTGTCTAGTTAATTGTGGAGAGAATTGCTGTTGTAGATTTCTCATTAATCATTATAGTTAGCATCATTTGCTGGTTTAACACAGTTCTTGGAAATTGCAGTGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACAC</genome_strand>
        <mrna_strand>TCTCTCTTCTCTTTCCATGGCTGCTGTGTTGGAAACCATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAAAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E310897" ref_strand="+" ref_description="SGN-E310897 [cLEZ-17-M13]">
      <seq>acacactctttatctctctcttctctttccatggctgctgtgttggaaaccattacagtcccacgcgcatcggcgctgccgtcgtcatcgcttgctcaggtcgccggttattccttctccggtcctcgtttctctgttagcttctctcaattcagcggccttaagatccagccaattcgctcatctgtatccactagctcatgctctaaaatcattccccgaggaggacgagtcgtttgcgaagctcaggataccgccgtggaagtggctactgttagtgataaaacatggaagacacttgtagttgagtctactgtacctgtactggttgaattttgggctccgtggtgtggtccatgccgaatgatccaccccgtcattgatgaactagcgaaggaatatgttggcaagcttacatgcttaaagctgaacacagatgaaagtccttccattgcaaccgaatttggaatccgaagcatcccaaccgtgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70790" stop="68102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70490" g_stop="70226" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="68630" i_length="1596">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68629" g_stop="68402" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="493" r_length="228" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E310897" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70490" e_stop="70226"/>
          <exon e_start="68629" e_stop="68402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACTCTCTATCTCTCTCTTCTCTTTCCATGGCTGCTGTGTTGGAAACCATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAGGTATTTTGTAACTGAAAGTATTTGTTACTACTCTTTATATTGAAATTCTCCATGCTCCTTTATGCCTTAGCTGAAAACTCAGTTCCAGGAAATTGAATTGTGTTAACGGTGGAAGTTTCTACTATTAAGATGAGTTAATTTTTAGTTTCATCTGTTCTAAATAGATAATAAGTTCTCATAGTAATAGTAATAACTTGAGTTATTTCGCATTCAAGGTATATTTACTTGGAATGGGAAATGAAATCTGTGAACAATATGTGTGTCTTTCCTTGTATTCTGCTTGTGAGTATCGGTATTTTGGTGTTGGTTACTTTGCTTGCCTAATTTCCTTATTAATTGAATTAGATTTATGTAGTGTGCGAGAGTTGGTAGATTTGAGAACAGAGTATGCTTTATATTTTCCTTGAATAGTGAGCTGGTGTTTGTCATTTATTACTCTCTCAGTTGAAATGTTGAACATTTGGATACTTTCCGTAGAAAGAGAGGGAAGAAAATGCTCAAGTTTTGTGTTTTCTCTTCCCTCGTGTTTAAATCCTGATACATCGAAGGCAAGTAAGAGCCTCAAAGTTGCCGTTTGTTGTTTTGTGCACATAGCTAATAACTTTGGATTAGCTCTCAGGTCAGTATAACTGGAATTTGTCCCGGAAAACCACTAGTAATATGTCGATTACTTGTGTTAGATGTCCTTTAGGAGTCTTAGAGACAAGAATAATGTTGTGATACTCTGCGAAAGAGAAGAAAGGAAACAAGAGAATGCAAAACATTTGAAACATCCTTCGTGTAAAAATATTGGGAACATCGTTCATGTGCTCCTTCACCTTTCACAACCACCTGACATCTCCCACAAGACCCTTGTAATGTTCCCTGCGCTAAGCTCTTCCATAGTTCCTCTTGTTTGCTTGTTTACTTTGTTTCCTTTTCTATTGGAAATAGTATGTTAGGTGCATGTAATGGTTTGCATCCTACTGCAGTTAATAGCATTGTATGCATGGTATTTAAGTGGAGAAGGGCAGTGGGTGGGTTTATATCCACGAAATTTTGAACCATGCGCCACTGACTCTTGGGCATTTCTCAGCTATAAAAAGAACTATGTTGGTCTGTGCTCTTTAACAATTTATATAAGCGAACTAGTTTGTCAAGACAATAAGCTCAATAAAGTGTAAAAGATGTCATTGGGCCGCTATGGTATAATACCCTCAAAGCTTTGTTGCTTTCATAGTTTCACTTACCTGCTAAGAATTCATTGAATATTGGTTGCTAGCATGTGAAGCTACTGCCTAAACATTGTTGGTCATATCAGTGCTTCCTTTGCCTTGCGGAATCTTCATGTTTCACCATGGCTTAAGACCTTTTGTGTGAGATGTAGATGTTGCACCAGTTATGTACTTATATTAGCCATGGTTAGTTGGGAAAATGGGAAGTTCTGTTGTCAACTTTTCTCTTTAGCTTCCATAATATGATTAGTTTTTTTAAAGAATTGGATACACAACCTTTTCCTGTCTAGTTAATTGTGGAGAGAATTGCTGTTGTAGATTTCTCATTAATCATTATAGTTAGCATCATTTGCTGGTTTAACACAGTTCTTGGAAATTGCAGTGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGA</genome_strand>
        <mrna_strand>ACACACTCTTTATCTCTCTCTTCTCTTTCCATGGCTGCTGTGTTGGAAACCATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E300641" ref_strand="+" ref_description="SGN-E300641 [cLET-45-L23]">
      <seq>acacacactctctatctctctcttctctttccatggctgctgtgttggaaaccattacagtcccacgcgcatcggcgctgccgtcgtcatcgcttgctcaggtcgccggttattccttctccggtcctcgtttctctgttagcttctctcaattcagcggccttaagatccagccaattcgctcatctgtatccactagctcatgctctaaaatcattccccgaggaggacgagtcgtttgcgaagctcaggataccgccgtggaagtggctactgttagtgataaaacatggaagacacttgtagttgagtctactgtacctgtactggttgaattttgggctccgtggtgtggtccatgccgaatgatccaccccgtcattgatgaactagcgaaggaatatgttggcaagcttacatgcttaaagctgaacacagatgaaagtccttccattgcaaccgaatttggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70792" stop="68125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70492" g_stop="70226" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="68630" i_length="1596">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68629" g_stop="68425" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="472" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E300641" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70492" e_stop="70226"/>
          <exon e_start="68629" e_stop="68425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACACTCTCTATCTCTCTCTTCTCTTTCCATGGCTGCTGTGTTGGAAACCATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAGGTATTTTGTAACTGAAAGTATTTGTTACTACTCTTTATATTGAAATTCTCCATGCTCCTTTATGCCTTAGCTGAAAACTCAGTTCCAGGAAATTGAATTGTGTTAACGGTGGAAGTTTCTACTATTAAGATGAGTTAATTTTTAGTTTCATCTGTTCTAAATAGATAATAAGTTCTCATAGTAATAGTAATAACTTGAGTTATTTCGCATTCAAGGTATATTTACTTGGAATGGGAAATGAAATCTGTGAACAATATGTGTGTCTTTCCTTGTATTCTGCTTGTGAGTATCGGTATTTTGGTGTTGGTTACTTTGCTTGCCTAATTTCCTTATTAATTGAATTAGATTTATGTAGTGTGCGAGAGTTGGTAGATTTGAGAACAGAGTATGCTTTATATTTTCCTTGAATAGTGAGCTGGTGTTTGTCATTTATTACTCTCTCAGTTGAAATGTTGAACATTTGGATACTTTCCGTAGAAAGAGAGGGAAGAAAATGCTCAAGTTTTGTGTTTTCTCTTCCCTCGTGTTTAAATCCTGATACATCGAAGGCAAGTAAGAGCCTCAAAGTTGCCGTTTGTTGTTTTGTGCACATAGCTAATAACTTTGGATTAGCTCTCAGGTCAGTATAACTGGAATTTGTCCCGGAAAACCACTAGTAATATGTCGATTACTTGTGTTAGATGTCCTTTAGGAGTCTTAGAGACAAGAATAATGTTGTGATACTCTGCGAAAGAGAAGAAAGGAAACAAGAGAATGCAAAACATTTGAAACATCCTTCGTGTAAAAATATTGGGAACATCGTTCATGTGCTCCTTCACCTTTCACAACCACCTGACATCTCCCACAAGACCCTTGTAATGTTCCCTGCGCTAAGCTCTTCCATAGTTCCTCTTGTTTGCTTGTTTACTTTGTTTCCTTTTCTATTGGAAATAGTATGTTAGGTGCATGTAATGGTTTGCATCCTACTGCAGTTAATAGCATTGTATGCATGGTATTTAAGTGGAGAAGGGCAGTGGGTGGGTTTATATCCACGAAATTTTGAACCATGCGCCACTGACTCTTGGGCATTTCTCAGCTATAAAAAGAACTATGTTGGTCTGTGCTCTTTAACAATTTATATAAGCGAACTAGTTTGTCAAGACAATAAGCTCAATAAAGTGTAAAAGATGTCATTGGGCCGCTATGGTATAATACCCTCAAAGCTTTGTTGCTTTCATAGTTTCACTTACCTGCTAAGAATTCATTGAATATTGGTTGCTAGCATGTGAAGCTACTGCCTAAACATTGTTGGTCATATCAGTGCTTCCTTTGCCTTGCGGAATCTTCATGTTTCACCATGGCTTAAGACCTTTTGTGTGAGATGTAGATGTTGCACCAGTTATGTACTTATATTAGCCATGGTTAGTTGGGAAAATGGGAAGTTCTGTTGTCAACTTTTCTCTTTAGCTTCCATAATATGATTAGTTTTTTTAAAGAATTGGATACACAACCTTTTCCTGTCTAGTTAATTGTGGAGAGAATTGCTGTTGTAGATTTCTCATTAATCATTATAGTTAGCATCATTTGCTGGTTTAACACAGTTCTTGGAAATTGCAGTGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAAT</genome_strand>
        <mrna_strand>ACACACACTCTCTATCTCTCTCTTCTCTTTCCATGGCTGCTGTGTTGGAAACCATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E216957" ref_strand="+" ref_description="SGN-E216957 [cLEL-1-K21]">
      <seq>tgctccagggctgctgtgttggaaaccattacagtcccacgcgcttcggcgctgccgtcgtcatcgcttgctcaggtcgccggttattccttctccggtcctcgtttctctgttagcttctctcaattcagcggccttaagatccagccaattcgctcatctgtatccactagctcatgctctaaaatcattccccgaggaggacgagtcgtttgcgaagctcaggataccgccgtggaagtggctactgttagtgataaaacatggaagacacttgtagttgagtctactgtacctgtactggttgaattttgggctccgtggtgtggtccatgccgaatgatccaccccgtcattgatgaactagcgaaggaatatgttggcaagcttacatgcttaaagctgaacacagatgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70763" stop="68152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70466" g_stop="70226" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="68630" i_length="1596">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68629" g_stop="68452" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="419" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E216957" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70466" e_stop="70226"/>
          <exon e_start="68629" e_stop="68452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCCATGGCTGCTGTGTTGGAAACCATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAGGTATTTTGTAACTGAAAGTATTTGTTACTACTCTTTATATTGAAATTCTCCATGCTCCTTTATGCCTTAGCTGAAAACTCAGTTCCAGGAAATTGAATTGTGTTAACGGTGGAAGTTTCTACTATTAAGATGAGTTAATTTTTAGTTTCATCTGTTCTAAATAGATAATAAGTTCTCATAGTAATAGTAATAACTTGAGTTATTTCGCATTCAAGGTATATTTACTTGGAATGGGAAATGAAATCTGTGAACAATATGTGTGTCTTTCCTTGTATTCTGCTTGTGAGTATCGGTATTTTGGTGTTGGTTACTTTGCTTGCCTAATTTCCTTATTAATTGAATTAGATTTATGTAGTGTGCGAGAGTTGGTAGATTTGAGAACAGAGTATGCTTTATATTTTCCTTGAATAGTGAGCTGGTGTTTGTCATTTATTACTCTCTCAGTTGAAATGTTGAACATTTGGATACTTTCCGTAGAAAGAGAGGGAAGAAAATGCTCAAGTTTTGTGTTTTCTCTTCCCTCGTGTTTAAATCCTGATACATCGAAGGCAAGTAAGAGCCTCAAAGTTGCCGTTTGTTGTTTTGTGCACATAGCTAATAACTTTGGATTAGCTCTCAGGTCAGTATAACTGGAATTTGTCCCGGAAAACCACTAGTAATATGTCGATTACTTGTGTTAGATGTCCTTTAGGAGTCTTAGAGACAAGAATAATGTTGTGATACTCTGCGAAAGAGAAGAAAGGAAACAAGAGAATGCAAAACATTTGAAACATCCTTCGTGTAAAAATATTGGGAACATCGTTCATGTGCTCCTTCACCTTTCACAACCACCTGACATCTCCCACAAGACCCTTGTAATGTTCCCTGCGCTAAGCTCTTCCATAGTTCCTCTTGTTTGCTTGTTTACTTTGTTTCCTTTTCTATTGGAAATAGTATGTTAGGTGCATGTAATGGTTTGCATCCTACTGCAGTTAATAGCATTGTATGCATGGTATTTAAGTGGAGAAGGGCAGTGGGTGGGTTTATATCCACGAAATTTTGAACCATGCGCCACTGACTCTTGGGCATTTCTCAGCTATAAAAAGAACTATGTTGGTCTGTGCTCTTTAACAATTTATATAAGCGAACTAGTTTGTCAAGACAATAAGCTCAATAAAGTGTAAAAGATGTCATTGGGCCGCTATGGTATAATACCCTCAAAGCTTTGTTGCTTTCATAGTTTCACTTACCTGCTAAGAATTCATTGAATATTGGTTGCTAGCATGTGAAGCTACTGCCTAAACATTGTTGGTCATATCAGTGCTTCCTTTGCCTTGCGGAATCTTCATGTTTCACCATGGCTTAAGACCTTTTGTGTGAGATGTAGATGTTGCACCAGTTATGTACTTATATTAGCCATGGTTAGTTGGGAAAATGGGAAGTTCTGTTGTCAACTTTTCTCTTTAGCTTCCATAATATGATTAGTTTTTTTAAAGAATTGGATACACAACCTTTTCCTGTCTAGTTAATTGTGGAGAGAATTGCTGTTGTAGATTTCTCATTAATCATTATAGTTAGCATCATTTGCTGGTTTAACACAGTTCTTGGAAATTGCAGTGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAG</genome_strand>
        <mrna_strand>TGCTCCAGGGCTGCTGTGTTGGAAACCATTACAGTCCCACGCGCTTCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4jrHEF/sgn_ests_tomato" ref_id="SGN-E294058" ref_strand="+" ref_description="SGN-E294058 [cLET-13-I5]">
      <seq>tgtaaatatccactcgctctcgctctcctccccatctctcccactatccacacacactctctatctctctcttctctttccatggctgctgtgttggaaaccattacagtcccacgcgcatcggcgctgccgtcgtcatcgcttgctcaggtcgccggttattccttctccggtcctcgtttctctgttagcttctctcaattcagcggccttaagatccagccaattcgctcatctgtatccactagctcatgctctaaaatcattccccgaggaggacgagtcgtttgcgaagctcaagataccgccgtggaagtggctactgttagtgataaaacatggaagacacttgtagttgagtctactgtacctgtactggttgaattttgggctccgtggtgtggtccatgccgaatgatccaccccgtcattgatgaactagcgaaagaatatgttggcaagcttacatgcttaaagctgaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0137J06-WY8Ws/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0137J06.2" temp_strand="-" temp_description="C07HBa0137J06.2  AC212633.2 htgs_phase:2 submitted_to_sgn_as:gi|167832398|gb|AC212633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0137J06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70841" stop="68160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70541" g_stop="70226" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="68630" i_length="1596">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68629" g_stop="68460" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="486" r_length="170" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0137J06.2" gen_strand="-" ref_id="SGN-E294058" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0137J06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70541" e_stop="70226"/>
          <exon e_start="68629" e_stop="68460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAAATATCCACTCGCTCTCGCTCTCCTCCCCATCTCTCCCACTATCCACACACACTCTCTATCTCTCTCTTCTCTTTCCATGGCTGCTGTGTTGGAAACCATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAGGTATTTTGTAACTGAAAGTATTTGTTACTACTCTTTATATTGAAATTCTCCATGCTCCTTTATGCCTTAGCTGAAAACTCAGTTCCAGGAAATTGAATTGTGTTAACGGTGGAAGTTTCTACTATTAAGATGAGTTAATTTTTAGTTTCATCTGTTCTAAATAGATAATAAGTTCTCATAGTAATAGTAATAACTTGAGTTATTTCGCATTCAAGGTATATTTACTTGGAATGGGAAATGAAATCTGTGAACAATATGTGTGTCTTTCCTTGTATTCTGCTTGTGAGTATCGGTATTTTGGTGTTGGTTACTTTGCTTGCCTAATTTCCTTATTAATTGAATTAGATTTATGTAGTGTGCGAGAGTTGGTAGATTTGAGAACAGAGTATGCTTTATATTTTCCTTGAATAGTGAGCTGGTGTTTGTCATTTATTACTCTCTCAGTTGAAATGTTGAACATTTGGATACTTTCCGTAGAAAGAGAGGGAAGAAAATGCTCAAGTTTTGTGTTTTCTCTTCCCTCGTGTTTAAATCCTGATACATCGAAGGCAAGTAAGAGCCTCAAAGTTGCCGTTTGTTGTTTTGTGCACATAGCTAATAACTTTGGATTAGCTCTCAGGTCAGTATAACTGGAATTTGTCCCGGAAAACCACTAGTAATATGTCGATTACTTGTGTTAGATGTCCTTTAGGAGTCTTAGAGACAAGAATAATGTTGTGATACTCTGCGAAAGAGAAGAAAGGAAACAAGAGAATGCAAAACATTTGAAACATCCTTCGTGTAAAAATATTGGGAACATCGTTCATGTGCTCCTTCACCTTTCACAACCACCTGACATCTCCCACAAGACCCTTGTAATGTTCCCTGCGCTAAGCTCTTCCATAGTTCCTCTTGTTTGCTTGTTTACTTTGTTTCCTTTTCTATTGGAAATAGTATGTTAGGTGCATGTAATGGTTTGCATCCTACTGCAGTTAATAGCATTGTATGCATGGTATTTAAGTGGAGAAGGGCAGTGGGTGGGTTTATATCCACGAAATTTTGAACCATGCGCCACTGACTCTTGGGCATTTCTCAGCTATAAAAAGAACTATGTTGGTCTGTGCTCTTTAACAATTTATATAAGCGAACTAGTTTGTCAAGACAATAAGCTCAATAAAGTGTAAAAGATGTCATTGGGCCGCTATGGTATAATACCCTCAAAGCTTTGTTGCTTTCATAGTTTCACTTACCTGCTAAGAATTCATTGAATATTGGTTGCTAGCATGTGAAGCTACTGCCTAAACATTGTTGGTCATATCAGTGCTTCCTTTGCCTTGCGGAATCTTCATGTTTCACCATGGCTTAAGACCTTTTGTGTGAGATGTAGATGTTGCACCAGTTATGTACTTATATTAGCCATGGTTAGTTGGGAAAATGGGAAGTTCTGTTGTCAACTTTTCTCTTTAGCTTCCATAATATGATTAGTTTTTTTAAAGAATTGGATACACAACCTTTTCCTGTCTAGTTAATTGTGGAGAGAATTGCTGTTGTAGATTTCTCATTAATCATTATAGTTAGCATCATTTGCTGGTTTAACACAGTTCTTGGAAATTGCAGTGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACA</genome_strand>
        <mrna_strand>TGTAAATATCCACTCGCTCTCGCTCTCCTCCCCATCTCTCCCACTATCCACACACACTCTCTATCTCTCTCTTCTCTTTCCATGGCTGCTGTGTTGGAAACCATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAAGATACCGCCGTGGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAAGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>86</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1834" PGL_stop="425"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1834" e_stop="1172"/>
            <exon e_start="634" e_stop="425"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.877" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1834" e_stop="1172" e_length="663"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.877">
            <gDNA_intron_boundary i_start="1171" i_stop="635" i_length="537"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="634" e_stop="425" e_length="210"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1834" stop="1675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1816" stop="1172"/>
              <exon start="634" stop="493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1815" stop="1326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1306" stop="1172"/>
              <exon start="634" stop="425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241003" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGGACCCCTCAACTCAATTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAAT : ATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAG</gDNA_template>
            <first_frame> Q  G  P  L  N  S  I  F  I  H  R  S  D  I  C  S  N  L  C  L  *  S  S  Y  L  C  G  V  L  E  F  F  L  V  I  W  *  K  K  S  L  I  L  F  C  L  F  K  F  V  F  W  G  C  C  F  L  M  I  Y  F  D  L  D  Y  K  I  S  P  P  S  P  S  F  S  Y  S  I  S  S  N  F  L  T  S  D  I  F  L  I  K  C  V  N  C  F  H  F  R  I  K  D  C  F  C  E  G  K  M  G  D  R  L  R  S  T  L  M  E  D  L  P  V  H  L  I  L  E  I  L  M  C  G  R  L  A  V  I  D  L  I  S  L  E  L  T  S  R  T  F  R  G  T  H  G  L  F  P  K  K  F  K  S  L  V  D  Y  A  A  F  Q  L  C  G  L  S  S  I  Y  A  S  L  H  C  N  A  Q  E  E  L  L  T  R  C  N  G  N  W  K  R  L  L  R  F  L  M  A  V  E  Q  S  S  D  M  V  E  T  S  A  G  N  :  M  Q  I  R  S  G  R  Y  H  T  L  L  I  N  D  S  A  A  Y  S  C  G  S  S  L  C  G  V  L  G  H  G  P  E  T  T  Q  C  V  E  F  T  R  I  S  F  P  V  P  V  Q  V  A  Q  V  S  A  S  H  N  H  A  A  F  V  T  G  S  G  Q </first_frame>
            <second_frame>  K  D  P  S  T  Q  F  S  F  I  D  P  I  F  A  Q  I  C  V  Y  K  V  P  I  F  V  G  F  W  S  F  F  L  *  F  G  R  K  R  V  *  F  C  F  V  C  S  S  L  C  F  G  V  V  V  S  *  *  F  I  S  T  *  I  I  R  F  P  H  Q  V  L  H  F  L  I  Q  F  H  Q  I  F  L  H  L  I  F  S  *  *  S  V  L  I  V  S  I  F  V  *  K  I  V  F  V  K  G  K  W  G  I  V  *  G  Q  L  *  W  R  I  C  Q  Y  I  *  F  L  K  Y  *  C  A  V  D  *  L  L  L  I  *  *  V  *  S  *  L  Q  G  L  L  G  E  H  M  V  C  F  L  K  S  S  S  L  W  *  I  M  L  L  F  S  F  V  D  *  V  Q  S  M  L  L  C  I  V  M  L  R  K  S  C  *  R  D  V  T  A  I  G  S  V  F  *  G  S  *  W  L  W  N  S  P  L  I  W  L  K  L  L  Q  A  I :   C  K  *  G  V  A  G  I  T  H  C  *  S  M  I  Q  Q  H  T  L  V  V  P  V  Y  A  A  S  L  V  M  G  L  K  Q  L  S  V  W  N  L  L  E  L  A  F  L  F  P  Y  K  L  R  K  F  Q  L  L  I  I  M  L  L  L  S  Q  G  L  D   </second_frame>
            <third_frame>   R  T  P  Q  L  N  F  H  S  *  I  R  Y  L  L  K  F  V  F  I  K  F  L  S  L  W  G  F  G  V  F  S  C  N  L  V  E  K  E  F  N  F  V  L  F  V  Q  V  C  V  L  G  L  L  F  L  D  D  L  F  R  L  R  L  *  D  F  P  T  K  S  F  I  F  L  F  N  F  I  K  F  S  Y  I  *  Y  F  L  D  K  V  C  *  L  F  P  F  S  Y  K  R  L  F  L  *  R  E  N  G  G  S  F  E  V  N  F  N  G  G  F  A  S  T  F  D  S  *  N  I  D  V  R  S  I  S  C  Y  *  F  N  K  F  R  A  N  F  K  D  F  *  G  N  T  W  F  V  S  *  K  V  Q  V  F  G  R  L  C  C  F  S  A  L  W  I  E  F  N  L  C  F  F  A  L  *  C  S  G  R  A  V  D  A  M  *  R  Q  L  E  A  S  F  E  V  L  D  G  C  G  T  V  L  *  Y  G  *  N  F  C  R  Q   : Y  A  N  K  E  W  Q  V  S  H  T  A  N  Q  *  F  S  S  I  L  L  W  F  Q  F  M  R  R  P  W  S  W  A  *  N  N  S  V  C  G  I  Y  S  N  *  L  S  C  S  R  T  S  C  A  S  F  S  F  S  *  S  C  C  F  C  H  R  V  W  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0137J06.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1723" stop="1172"/>
                    <exon start="634" stop="425"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>762</number_coding_nucleotides>
                  <number_encoded_amino_acids>254</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKSLILFCLFKFVFWGCCFLMIYFDLDYKISPPSPSFSYSISSNFLTSDIFLIKCVNCFHFRIKDCFCEGKMGDRLRSTLMEDLPVHLILEILMCGRLAVIDLISLELTSRTFRGTHGLFPKKFKSLVDYAAFQLCGLSSIYASLHCNAQEELLTRCNGNWKRLLRFLMAVEQSSDMVETSAGNMQIRSGRYHTLLINDSAAYSCGSSLCGVLGHGPETTQCVEFTRISFPVPVQVAQVSASHNHAAFVTGSGQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="10895" PGL_stop="16656"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10895" e_stop="11220"/>
            <exon e_start="11565" e_stop="11698"/>
            <exon e_start="11964" e_stop="12093"/>
            <exon e_start="12210" e_stop="12367"/>
            <exon e_start="12864" e_stop="12965"/>
            <exon e_start="13126" e_stop="13230"/>
            <exon e_start="13392" e_stop="13520"/>
            <exon e_start="14111" e_stop="14251"/>
            <exon e_start="15214" e_stop="15314"/>
            <exon e_start="15591" e_stop="15648"/>
            <exon e_start="16137" e_stop="16656"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10895" e_stop="11220" e_length="326"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11221" i_stop="11564" i_length="344"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11565" e_stop="11698" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.976">
            <gDNA_intron_boundary i_start="11699" i_stop="11963" i_length="265"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11964" e_stop="12093" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.886" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12094" i_stop="12209" i_length="116"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12210" e_stop="12367" e_length="158"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12368" i_stop="12863" i_length="496"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12864" e_stop="12965" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="0.927" acc_prob="0.990">
            <gDNA_intron_boundary i_start="12966" i_stop="13125" i_length="160"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="13126" e_stop="13230" e_length="105"/>
          </exon>
          <intron i_serial="6" don_prob="0.903" acc_prob="0.979">
            <gDNA_intron_boundary i_start="13231" i_stop="13391" i_length="161"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="13392" e_stop="13520" e_length="129"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.996">
            <gDNA_intron_boundary i_start="13521" i_stop="14110" i_length="590"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="14111" e_stop="14251" e_length="141"/>
          </exon>
          <intron i_serial="8" don_prob="0.978" acc_prob="0.944">
            <gDNA_intron_boundary i_start="14252" i_stop="15213" i_length="962"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="15214" e_stop="15314" e_length="101"/>
          </exon>
          <intron i_serial="9" don_prob="0.957" acc_prob="0.997">
            <gDNA_intron_boundary i_start="15315" i_stop="15590" i_length="276"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="15591" e_stop="15648" e_length="58"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="15649" i_stop="16136" i_length="488"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="16137" e_stop="16656" e_length="520"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10895" stop="11220"/>
              <exon start="11565" stop="11698"/>
              <exon start="11964" stop="12093"/>
              <exon start="12210" stop="12367"/>
              <exon start="12864" stop="12965"/>
              <exon start="13126" stop="13202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10897" stop="11220"/>
              <exon start="11565" stop="11698"/>
              <exon start="11964" stop="12093"/>
              <exon start="12210" stop="12367"/>
              <exon start="12864" stop="12965"/>
              <exon start="13126" stop="13230"/>
              <exon start="13392" stop="13520"/>
              <exon start="14111" stop="14251"/>
              <exon start="15214" stop="15314"/>
              <exon start="15591" stop="15648"/>
              <exon start="16137" stop="16608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10897" stop="11220"/>
              <exon start="11565" stop="11698"/>
              <exon start="11964" stop="12010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10901" stop="11220"/>
              <exon start="11565" stop="11698"/>
              <exon start="11964" stop="12093"/>
              <exon start="12210" stop="12367"/>
              <exon start="12864" stop="12889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10910" stop="11220"/>
              <exon start="11565" stop="11689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10911" stop="11220"/>
              <exon start="11565" stop="11698"/>
              <exon start="11964" stop="12093"/>
              <exon start="12210" stop="12364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10912" stop="11220"/>
              <exon start="11565" stop="11698"/>
              <exon start="11964" stop="12093"/>
              <exon start="12210" stop="12216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10913" stop="11220"/>
              <exon start="11565" stop="11698"/>
              <exon start="11964" stop="12046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10914" stop="11220"/>
              <exon start="11565" stop="11698"/>
              <exon start="11964" stop="12014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10915" stop="11220"/>
              <exon start="11565" stop="11698"/>
              <exon start="11964" stop="12093"/>
              <exon start="12210" stop="12267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10916" stop="11220"/>
              <exon start="11565" stop="11698"/>
              <exon start="11964" stop="12045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10916" stop="11220"/>
              <exon start="11565" stop="11698"/>
              <exon start="11964" stop="12037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10916" stop="11220"/>
              <exon start="11565" stop="11698"/>
              <exon start="11964" stop="12035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10916" stop="11130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11024" stop="11220"/>
              <exon start="11565" stop="11698"/>
              <exon start="11964" stop="12093"/>
              <exon start="12210" stop="12367"/>
              <exon start="12864" stop="12965"/>
              <exon start="13126" stop="13229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11049" stop="11220"/>
              <exon start="11565" stop="11698"/>
              <exon start="11964" stop="12093"/>
              <exon start="12210" stop="12311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11115" stop="11220"/>
              <exon start="11565" stop="11698"/>
              <exon start="11964" stop="12093"/>
              <exon start="12210" stop="12348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11155" stop="11220"/>
              <exon start="11565" stop="11698"/>
              <exon start="11964" stop="12093"/>
              <exon start="12210" stop="12356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12079" stop="12093"/>
              <exon start="12210" stop="12367"/>
              <exon start="12864" stop="12965"/>
              <exon start="13126" stop="13230"/>
              <exon start="13392" stop="13520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12223" stop="12367"/>
              <exon start="12864" stop="12965"/>
              <exon start="13126" stop="13230"/>
              <exon start="13392" stop="13520"/>
              <exon start="14111" stop="14220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12264" stop="12367"/>
              <exon start="12864" stop="12965"/>
              <exon start="13126" stop="13230"/>
              <exon start="13392" stop="13520"/>
              <exon start="14111" stop="14190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12951" stop="12965"/>
              <exon start="13126" stop="13230"/>
              <exon start="13392" stop="13520"/>
              <exon start="14111" stop="14251"/>
              <exon start="15214" stop="15314"/>
              <exon start="15591" stop="15648"/>
              <exon start="16137" stop="16320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13187" stop="13230"/>
              <exon start="13392" stop="13520"/>
              <exon start="14111" stop="14251"/>
              <exon start="15214" stop="15314"/>
              <exon start="15591" stop="15648"/>
              <exon start="16137" stop="16160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13216" stop="13230"/>
              <exon start="13392" stop="13520"/>
              <exon start="14111" stop="14251"/>
              <exon start="15214" stop="15314"/>
              <exon start="15591" stop="15648"/>
              <exon start="16137" stop="16186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13393" stop="13520"/>
              <exon start="14111" stop="14251"/>
              <exon start="15214" stop="15314"/>
              <exon start="15591" stop="15648"/>
              <exon start="16137" stop="16248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14173" stop="14251"/>
              <exon start="15214" stop="15314"/>
              <exon start="15591" stop="15648"/>
              <exon start="16137" stop="16629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262241" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15214" stop="15314"/>
              <exon start="15591" stop="15648"/>
              <exon start="16137" stop="16629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263600" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16186" stop="16656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16205" stop="16637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16223" stop="16622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258121" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTGGAGTGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG : GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG : CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG : ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAG : GTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG : TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG : GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT : GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG : GTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG : GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAG : GGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAGATTGAAGCTTCTTTCTGTTCTATACGA</gDNA_template>
            <first_frame> C  G  V  Y  T  T  N  R  P  R  R  L  R  Y  *  R  *  S  P  I  P  K  P  *  F  C  S  S  Y  I  G  D  G  E  E  E  R  E  V  G  E  C  I  G  K  A  K  A  F  I  G  L  Q  *  G  C  Q  R  S  Q  K  W  P  *  R  R  Y  C  A  A  A  Q  D  V  Q  Y  Q  A  E  A  *  S  S  G  S  H  N  *  A  R  L  T  I  K  G  A  A  I  N  K  D  T  T  R  S  S  L  V  R :   *  Y  S  G  G  Q  P  E  G  T  G  V  F  *  R  R  A  P  N  S  A  F  Q  *  L  Q  C  Y  I  K  R  K  E  V  A  H  V  P  F  K  *  S  S  E   : A  S  K  S  S  S  A  *  Q  *  A  I  C  *  C  F  W  T  K  N  K  E  E  T  P  Q  T  Y  G  I  R  L  *  S  F  S  E  E  G  *  C  V  S  * :   *  F  *  R  Q  T  W  C  *  H  L  H  G  *  K  C  *  W  I  Q  R  S  C  *  A  H  N  V  *  E  R  T  K  *  T  N  L  E  *  A  L  Q  S  H  R  L  F  *  C  R  Y  S   : G  S  *  C  Q  R  P  L  W  Y  K  V  L  P  F  G  E  T  F  E  R  K  L  Q  A  Q  T  Y  G  P  F  A  *  *   : V  *  F  G  P  C  L  G  N  K  G  M  A  *  S  A  L  *  G  I  S  N  F  G  I  S  C  K  C  H  Q  V  L  W  K   : G  F  S  F  V  S  A  E  T  V  F  S  S  K  E  R  *  A  S  N  L  C  W  F  Y  R  L  S  Q  C  W  Q  V  I  S  Y  *  Y  I  A  H  K  E   : C  L  Q  G  G  S  Y  P  R  R  D  *  S  V  A  V  H  Y  T  H  K  E  D  I  L  D  *  L  S  W  C  S  L  S  E  S  *  F  R  N  R  Y  S  L  E  G  R   : G  T  S  D  K  P  T  *  C  F  *  T  H  *  R  S  V  E  S  R  *  E  G  A  S  *  K  S  L  *  D  R  E  L  :  G  *  R  V  *  L  S  S  T  A  M  Q  V  F  R  Q  T  S  E   : G  R  *  T  *  L  Q  Y  C  C  Q  D  G  S  P  *  L  A  K  R  Q  H  S  F  L  C  S  T  S  K  A  *  *  *  A  K  *  T  C  R  R  G  R  H  S  R  *  *  R  S  G  H  S  C  S  Q  S  Y  C  *  R  R  F  I  T  T  T  E  G  S  S  C  S  G  G  T  I  *  *  G  *  A  V  G  *  K  L  I  W  A  D  Y  P  L  D  L  Q  H  P  Q  F  W  N  R  V  F  V  Y  R  F  Y  N  L  L  V  G  S  I  A  F  P  E  F  S  S  P  R  R  D  *  Y  T  G  R  K  Y  R  Y  L  V  F  L  F  *  R  L  F  R  I  E  C  *  W  K  *  L  I  S  S  S  S  T  C  L  R  L  K  L  L  S  V  L  Y   </first_frame>
            <second_frame>  V  E  C  I  L  Q  T  G  L  D  D  *  G  I  N  V  N  R  R  F  L  N  P  S  F  V  L  R  I  S  E  M  A  K  K  K  E  R  S  V  N  V  S  G  K  P  K  H  S  L  D  S  N  R  D  V  S  A  A  K  N  G  R  S  A  A  T  V  R  R  L  K  M  Y  N  T  R  P  K  R  N  P  Q  G  H  I  I  K  H  D  L  Q  S  K  E  L  P  S  T  R  I  Q  P  D  R  R  W  F   : G  N  T  R  V  V  N  Q  K  E  L  E  F  F  R  E  E  L  Q  T  R  L  S  S  N  Y  N  V  I  L  K  E  R  K  L  P  M  S  L  L  N  D  H  Q  K  :  Q  V  K  V  H  L  L  D  N  E  P  F  A  D  A  F  G  P  K  T  K  R  K  R  P  K  L  M  A  L  D  Y  E  A  L  V  K  K  V  D  V  S  H   : D  D  F  E  D  K  H  G  A  S  T  S  M  D  E  N  A  D  G  F  R  D  L  V  R  H  T  M  F  E  K  G  Q  S  K  R  I  W  S  E  L  Y  K  V  I  D  S  S  D  V  V  I  Q  :  V  L  D  A  R  D  P  C  G  T  R  C  Y  H  L  E  K  H  L  K  E  N  C  K  H  K  H  M  V  L  L  L  N  K  :  C  D  L  V  P  A  W  A  T  K  G  W  L  R  V  L  S  R  E  Y  P  T  L  A  F  H  A  S  V  T  K  S  F  G  K  :  G  S  L  L  S  V  L  R  Q  F  S  R  L  K  S  D  K  Q  A  I  S  V  G  F  I  G  Y  P  N  V  G  K  S  S  V  I  N  T  L  R  T  K  N  :  V  C  K  V  A  P  I  P  G  E  T  K  V  W  Q  Y  I  T  L  T  K  R  I  F  L  I  D  C  P  G  V  V  Y  Q  N  H  D  S  E  T  D  I  V  L  K  G  V  :  V  R  V  T  N  L  P  D  A  S  E  H  I  S  E  V  L  N  R  V  K  K  E  H  L  K  R  A  Y  K  I  E  N  W :   V  D  E  Y  D  F  L  Q  Q  L  C  K  S  S  G  K  L  L  K  :  G  G  E  P  D  Y  N  T  A  A  K  M  V  L  H  D  W  Q  R  G  N  I  P  F  F  V  P  P  P  K  L  D  D  E  P  N  E  L  V  A  E  A  D  T  A  V  D  N  D  Q  A  T  A  A  L  K  A  I  A  D  V  V  S  S  Q  Q  L  K  E  V  P  V  Q  E  E  L  F  S  K  A  E  L  L  G  E  N  *  Y  G  R  I  I  L  *  T  C  N  I  H  S  S  G  I  E  F  S  Y  I  V  F  T  I  F  *  L  G  P  L  H  S  Q  S  F  L  V  L  E  E  I  D  I  L  V  E  N  I  D  T  S  Y  F  C  F  N  V  Y  F  E  L  S  V  N  G  N  D  *  Y  H  L  A  Q  L  V  *  D  *  S  F  F  L  F  Y  T  </second_frame>
            <third_frame>   W  S  V  Y  Y  K  P  A  *  T  T  E  V  L  T  L  I  A  D  S  *  T  L  V  L  F  F  V  Y  R  R  W  R  R  R  K  R  G  R  *  M  Y  R  E  S  Q  S  I  H  W  T  P  I  G  M  S  A  Q  P  K  M  A  V  A  P  L  L  C  G  G  S  R  C  T  I  P  G  R  S  V  I  L  R  V  T  *  L  S  T  T  Y  N  Q  R  S  C  H  Q  Q  G  Y  N  Q  I  V  V  G  S  :  V  I  L  G  W  S  T  R  R  N  W  S  F  L  E  K  S  S  K  L  G  F  P  V  T  T  M  L  Y  *  K  K  G  S  C  P  C  P  F  *  M  I  I  R  S :   K  *  K  F  I  C  L  T  M  S  H  L  L  M  L  L  D  Q  K  Q  R  G  N  A  P  N  L  W  H  *  I  M  K  L  *  *  R  R  L  M  C  L  M  :  M  I  L  K  T  N  M  V  L  A  P  P  W  M  K  M  L  M  D  S  E  I  L  L  G  T  Q  C  L  R  K  D  K  V  N  E  F  G  V  S  S  T  K  S  *  T  L  L  M  S  L  F  R :   F  L  M  P  E  T  P  V  V  Q  G  A  T  I  W  R  N  I  *  K  K  I  A  S  T  N  I  W  S  F  C  L  I  S :   V  I  W  S  L  L  G  Q  Q  R  D  G  L  E  C  S  L  G  N  I  Q  L  W  H  F  M  Q  V  S  P  S  P  L  E  R :   V  L  F  C  Q  C  *  D  S  F  L  V  *  R  A  I  S  K  Q  S  L  L  V  L  *  A  I  P  M  L  A  S  H  Q  L  L  I  H  C  A  Q  R  M :   F  A  R  W  L  L  S  Q  E  R  L  K  C  G  S  T  L  H  S  Q  R  G  Y  S  *  L  I  V  L  V  *  F  I  R  I  M  I  P  K  Q  I  *  S  *  R  A  W :   Y  E  *  Q  T  Y  L  M  L  L  N  T  L  A  K  C  *  I  A  L  R  R  S  I  L  K  E  L  I  R  *  R  I   : G  L  T  S  M  T  F  F  N  S  Y  A  S  L  Q  A  N  F  *  R :   E  V  N  L  T  T  I  L  L  P  R  W  F  S  M  I  G  K  E  A  T  F  L  S  L  F  H  L  Q  S  L  M  M  S  Q  M  N  L  S  Q  R  Q  T  Q  P  L  I  T  I  R  P  Q  L  L  S  K  L  L  L  T  S  F  H  H  N  N  *  R  K  F  L  F  R  R  N  Y  L  V  R  L  S  C  W  V  K  T  N  M  G  G  L  S  F  R  L  A  T  S  T  V  L  E  S  S  F  R  I  S  F  L  Q  S  F  S  W  V  H  C  I  P  R  V  F  *  S  *  K  R  L  I  Y  W  S  K  I  *  I  P  R  I  F  V  L  T  F  I  S  N  *  V  L  M  E  M  I  N  I  I  *  L  N  L  F  K  I  E  A  S  F  C  S  I  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0137J06.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10932" stop="11220"/>
                    <exon start="11565" stop="11698"/>
                    <exon start="11964" stop="12093"/>
                    <exon start="12210" stop="12367"/>
                    <exon start="12864" stop="12965"/>
                    <exon start="13126" stop="13230"/>
                    <exon start="13392" stop="13520"/>
                    <exon start="14111" stop="14251"/>
                    <exon start="15214" stop="15314"/>
                    <exon start="15591" stop="15648"/>
                    <exon start="16137" stop="16397"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1605</number_coding_nucleotides>
                  <number_encoded_amino_acids>535</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GINVNRRFLNPSFVLRISEMAKKKERSVNVSGKPKHSLDSNRDVSAAKNGRSAATVRRLKMYNTRPKRNPQGHIIKHDLQSKELPSTRIQPDRRWFGNTRVVNQKELEFFREELQTRLSSNYNVILKERKLPMSLLNDHQKQVKVHLLDNEPFADAFGPKTKRKRPKLMALDYEALVKKVDVSHDDFEDKHGASTSMDENADGFRDLVRHTMFEKGQSKRIWSELYKVIDSSDVVIQVLDARDPCGTRCYHLEKHLKENCKHKHMVLLLNKCDLVPAWATKGWLRVLSREYPTLAFHASVTKSFGKGSLLSVLRQFSRLKSDKQAISVGFIGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNHDSETDIVLKGVVRVTNLPDASEHISEVLNRVKKEHLKRAYKIENWVDEYDFLQQLCKSSGKLLKGGEPDYNTAAKMVLHDWQRGNIPFFVPPPKLDDEPNELVAEADTAVDNDQATAALKAIADVVSSQQLKEVPVQEELFSKAELLGEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="14450" e_stop="14790"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14450" e_stop="14790" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14450" stop="14790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14450" stop="14790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCT</gDNA_template>
            <first_frame> I  P  E  M  C  S  Y  G  D  L  R  S  N  I  L  L  C  S  L  F  I  S  T  S  I  L  F  S  *  K  F  L  L  L  A  F  F  *  N  E  I  L  V  A  N  V  N  L  G  *  L  L  G  Q  R  F  Y  D  W  H  T  *  D  D  L  I  *  L  *  C  R  K  H  L  V  M  N  T  F  G  *  G  K  I  G  N  K  S  I  A  M  M  L  L  C  G  C  W  S  S  L  L  W  N  F  D  D  I  A  L  K  E  V   </first_frame>
            <second_frame>  F  Q  R  C  V  L  M  V  I  *  D  Q  I  S  S  C  V  H  F  L  *  V  L  Q  F  C  F  P  R  S  S  Y  C  W  H  F  F  K  M  K  F  W  S  P  M  L  I  *  A  S  Y  *  D  S  A  S  M  T  G  I  H  R  M  I  S  Y  S  Y  D  V  G  S  I  *  S  *  I  H  L  D  R  G  R  L  E  T  N  Q  L  Q  *  C  C  C  V  D  A  G  L  P  Y  F  G  T  S  M  I  L  L  *  K  R  S  </second_frame>
            <third_frame>   S  R  D  V  F  L  W  *  F  E  I  K  Y  P  L  V  F  T  F  Y  K  Y  F  N  F  V  F  L  E  V  L  I  V  G  I  F  L  K  *  N  F  G  R  Q  C  *  F  R  L  A  T  R  T  A  L  L  *  L  A  Y  I  G  *  S  H  I  V  M  M  S  E  A  F  S  H  E  Y  I  W  I  G  E  D  W  K  Q  I  N  C  N  D  A  V  V  W  M  L  V  F  P  T  L  E  L  R  *  Y  C  S  E  R  G  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0137J06.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="14789" PGL_stop="14449"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14789" e_stop="14449"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14789" e_stop="14449" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14789" stop="14449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14789" stop="14449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372887" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGACCTCTTTCAGAGCAATATCATCGAAGTTCCAAAGTAGGGAAGACCAGCATCCACACAACAGCATCATTGCAATTGATTTGTTTCCAATCTTCCCCTATCCAAATGTATTCATGACTAAATGCTTCCGACATCATAACTATATGAGATCATCCTATGTATGCCAGTCATAGAAGCGCTGTCCTAGTAGCTAGCCTAAATTAACATTGGCGACCAAAATTTCATTTTAAAAAAATGCCAACAATAAGAACTTCTAGGAAAACAAAATTGAAGTACTTATAAAAAGTGAACACAAGAGGATATTTGATCTCAAATCACCATAAGAACACATCTCTGGAATT</gDNA_template>
            <first_frame> G  P  L  S  E  Q  Y  H  R  S  S  K  V  G  K  T  S  I  H  T  T  A  S  L  Q  L  I  C  F  Q  S  S  P  I  Q  M  Y  S  *  L  N  A  S  D  I  I  T  I  *  D  H  P  M  Y  A  S  H  R  S  A  V  L  V  A  S  L  N  *  H  W  R  P  K  F  H  F  K  K  M  P  T  I  R  T  S  R  K  T  K  L  K  Y  L  *  K  V  N  T  R  G  Y  L  I  S  N  H  H  K  N  T  S  L  E   </first_frame>
            <second_frame>  D  L  F  Q  S  N  I  I  E  V  P  K  *  G  R  P  A  S  T  Q  Q  H  H  C  N  *  F  V  S  N  L  P  L  S  K  C  I  H  D  *  M  L  P  T  S  *  L  Y  E  I  I  L  C  M  P  V  I  E  A  L  S  *  *  L  A  *  I  N  I  G  D  Q  N  F  I  L  K  K  C  Q  Q  *  E  L  L  G  K  Q  N  *  S  T  Y  K  K  *  T  Q  E  D  I  *  S  Q  I  T  I  R  T  H  L  W  N  </second_frame>
            <third_frame>   T  S  F  R  A  I  S  S  K  F  Q  S  R  E  D  Q  H  P  H  N  S  I  I  A  I  D  L  F  P  I  F  P  Y  P  N  V  F  M  T  K  C  F  R  H  H  N  Y  M  R  S  S  Y  V  C  Q  S  *  K  R  C  P  S  S  *  P  K  L  T  L  A  T  K  I  S  F  *  K  N  A  N  N  K  N  F  *  E  N  K  I  E  V  L  I  K  S  E  H  K  R  I  F  D  L  K  S  P  *  E  H  I  S  G  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0137J06.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="32962" PGL_stop="33283"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32962" e_stop="33283"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="32962" e_stop="33283" e_length="322"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32962" stop="33283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32962" stop="33266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32962" stop="33112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392727" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGGACTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTTTAACACGAAGATATACATTTTTACATGTGTATATACAATTTTTTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTCTGTGTATAAAGCGAAAGAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  H  N  C  I  I  L  W  T  F  L  C  N  I  *  S  K  M  F  V  N  Y  I  I  K  C  L  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  F  L  A  L  Y  K  T  E  T  E  I  I  H  F  C  V  *  S  E  R  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  K  K  L  Y  F  T  A  I  V  *  F  T  I  V  *  F  F  G  L  F  S  A  I  F  E  V  K  C  L  *  I  I  *  L  S  V  *  H  E  D  I  H  F  Y  M  C  I  Y  N  F  F  S  L  Y  T  K  Q  K  Q  K  L  Y  T  S  V  Y  K  A  K  E </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  K  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  D  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  F  N  T  K  I  Y  I  F  T  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  N  Y  T  L  L  C  I  K  R  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0137J06.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="36508" PGL_stop="45938"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36508" e_stop="36699"/>
            <exon e_start="37712" e_stop="38347"/>
            <exon e_start="38739" e_stop="38764"/>
            <exon e_start="39602" e_stop="39679"/>
            <exon e_start="41305" e_stop="41375"/>
            <exon e_start="41506" e_stop="41762"/>
            <exon e_start="42423" e_stop="42508"/>
            <exon e_start="42645" e_stop="42701"/>
            <exon e_start="43244" e_stop="43311"/>
            <exon e_start="43404" e_stop="43510"/>
            <exon e_start="43924" e_stop="43948"/>
            <exon e_start="44009" e_stop="44024"/>
            <exon e_start="44162" e_stop="44177"/>
            <exon e_start="44371" e_stop="44380"/>
            <exon e_start="45532" e_stop="45935"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.992" e_score="0.995"/>
          <exon-intron don_prob="0.984" acc_prob="0.995" e_score="0.997"/>
          <exon-intron don_prob="0.998" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.842" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.706" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.745" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.991" e_score="0.640"/>
          <exon-intron don_prob="0.000" acc_prob="0.883" e_score="0.312"/>
          <exon-intron don_prob="0.000" acc_prob="0.577" e_score="0.688"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.600"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="36508" e_stop="36699" e_length="192"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.992">
            <gDNA_intron_boundary i_start="36700" i_stop="37711" i_length="1012"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="37712" e_stop="38347" e_length="636"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.995">
            <gDNA_intron_boundary i_start="38348" i_stop="38738" i_length="391"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38739" e_stop="38764" e_length="26"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.960">
            <gDNA_intron_boundary i_start="38765" i_stop="39601" i_length="837"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39602" e_stop="39679" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.952" acc_prob="0.974">
            <gDNA_intron_boundary i_start="39680" i_stop="41304" i_length="1625"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41305" e_stop="41375" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.842" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41376" i_stop="41505" i_length="130"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41506" e_stop="41762" e_length="257"/>
          </exon>
          <intron i_serial="6" don_prob="0.976" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41763" i_stop="42422" i_length="660"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="42423" e_stop="42508" e_length="86"/>
          </exon>
          <intron i_serial="7" don_prob="0.706" acc_prob="0.997">
            <gDNA_intron_boundary i_start="42509" i_stop="42644" i_length="136"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="42645" e_stop="42701" e_length="57"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="42702" i_stop="43243" i_length="542"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="43244" e_stop="43311" e_length="68"/>
          </exon>
          <intron i_serial="9" don_prob="0.965" acc_prob="0.000">
            <gDNA_intron_boundary i_start="43312" i_stop="43403" i_length="92"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="43404" e_stop="43510" e_length="107"/>
          </exon>
          <intron i_serial="10" don_prob="0.745" acc_prob="0.000">
            <gDNA_intron_boundary i_start="43511" i_stop="43923" i_length="413"/>
          </intron>
          <exon e_serial="11" e_score="0.640">
            <gDNA_exon_boundary e_start="43924" e_stop="43948" e_length="25"/>
          </exon>
          <intron i_serial="11" don_prob="0.987" acc_prob="0.991">
            <gDNA_intron_boundary i_start="43949" i_stop="44008" i_length="60"/>
          </intron>
          <exon e_serial="12" e_score="0.312">
            <gDNA_exon_boundary e_start="44009" e_stop="44024" e_length="16"/>
          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.883">
            <gDNA_intron_boundary i_start="44025" i_stop="44161" i_length="137"/>
          </intron>
          <exon e_serial="13" e_score="0.688">
            <gDNA_exon_boundary e_start="44162" e_stop="44177" e_length="16"/>
          </exon>
          <intron i_serial="13" don_prob="0.000" acc_prob="0.577">
            <gDNA_intron_boundary i_start="44178" i_stop="44370" i_length="193"/>
          </intron>
          <exon e_serial="14" e_score="0.600">
            <gDNA_exon_boundary e_start="44371" e_stop="44380" e_length="10"/>
          </exon>
          <intron i_serial="14" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44381" i_stop="45531" i_length="1151"/>
          </intron>
          <exon e_serial="15" e_score="0.998">
            <gDNA_exon_boundary e_start="45532" e_stop="45935" e_length="404"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36508" stop="36699"/>
              <exon start="37712" stop="38347"/>
              <exon start="38739" stop="38764"/>
              <exon start="39602" stop="39679"/>
              <exon start="41305" stop="41375"/>
              <exon start="41506" stop="41762"/>
              <exon start="42423" stop="42508"/>
              <exon start="42645" stop="42701"/>
              <exon start="43244" stop="43311"/>
              <exon start="43404" stop="43510"/>
              <exon start="43924" stop="43948"/>
              <exon start="44009" stop="44024"/>
              <exon start="44162" stop="44177"/>
              <exon start="44371" stop="44380"/>
              <exon start="45532" stop="45935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36551" stop="36699"/>
              <exon start="37712" stop="38210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36569" stop="36699"/>
              <exon start="37712" stop="37958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36594" stop="36699"/>
              <exon start="37712" stop="38136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36597" stop="36699"/>
              <exon start="37712" stop="38300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36598" stop="36699"/>
              <exon start="37712" stop="38246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37829" stop="38347"/>
              <exon start="38739" stop="38764"/>
              <exon start="39602" stop="39666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37970" stop="38336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315628" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTCTCTCTCCTCACTCTTTCTTCTTTTCTCCTTCCTTCATAGTTCCTTCCTTCCTTCTCCGAAAAGCTAGCGGTTGAGTCTGAAGAGTGAACAATATATTGTTCGAATGGAGAGAGCCGATAAAAAACTTCATTAAAGCTACTTCGTTTGGCTCTCATTCTCTATCTATCATCGGCCGGCAAGTTTATACA : CGGTTCTTATTTCATCTTATACTGCAAGGATGAAGATGGAGGCACCTCCTTCGACAATCTTGTTTACTGATGATGATAGCAAGAACCTGGAGCAATTGCTTGATGTCTTTGGATCTGTTGTCTCTCTCGATGACATCGCTGCAGCTTATTGTAAAGCAGGTCGGGATCCAATTATTGCAGGTGATATACTTGGAGATCAGAAACCTAGCAGCTCCGGAACTACTAACTCTGAGATGGAAGAAAACATAGAGGATTCCGTGACTCTGACTTCTGAATTTGAGGAAGTAGGGGACTCTATGATATCGACATCTGCATCTGTATCTGAGATTGATGCCAAGAGAGTTGGTCCCAGGTCATCAAAGCAAAAAAAGTTATCAGTGTCTATGGGGACTGTCTCAAGCATGATCCCAAAAGACTATCTGACGAATAGGCCACTAATTACAGAAACTTCTACGAGAATCAAGCCACTGAAATTAAGCGCAGATGATTTCTTAACCCCAGAGCTAAGGGAGGAGAAAGCTCCATTAGGTGCTGCAGCTATGAGTGAAACCCTGCCCAGCAGTGTAGAGGAGTTCCTCTTCAACATGCTGGGAAGCGGATTTTCTCTTGACAGGAGTGTAATTGGAGATGTTGTTG : GTCAATGCAGCTACGATCTGAACAAG : AGTATGGATAAGCTGCTAGATATGTCCGCATCAACTTTGGGAAAGAGCGATGATATTATAAATATAGGTGTCAAGAAA : TCTGTGGAGAGTTCAGATTTTGCATCAGTTGTATCAAAAGAGACATCTTCAATGACAGATCCAGCCATCCG : TTCCAAAGCAAATGAGAAGACTAAAAATGGGCTCAAGTTATCTATGAAGGAGCAGGAAAGGTATGAGATTCAAAAGGAAGTTCTGCATGCATTGTTTGATGTACCTGCAGCTTCAAGATATGATAATGTGGATGAAGTGATTCGTCCGGTGAAGGAAGTTGGGAAGTCTAGTAGATTAAATCTCGTTGTAGATAAACCATTACAGGAGACTTTAGAACGCCAGATTCTTATCAGGACACCACAAAGTGATGCAAAAA : ATGGTGAGGAGGATGAAGAAAGCTACGAAGTTCTTCGGAAAGCTGTAAAGGAGTACTGGATTACAATGAAAGAGTACTATAATGCA : GCTTCTGAAGCATTCTCCAAAGGAGATCATGATCAAGCACGCAAATTCCTGGAAGAG : GGACAATTTTTCATGACGAAGGCGCAAGTGACGGATGAAAAATCCTCTCAAAAGCTTCTTGAAACCAG : TTGCAGTTCCAGCAAAGAAATTGTGACACTCGACCTTCACGATTTGGAGCCAAAGGATGCAGTGCGCTTACTCAAACTTCAGTTGACTTCTCTTTGTGGATTCTCGT : CTATCCAACTTCTTCTGCATATAAG : TTTGTCCCTTGAACAG : ATGCTGAGATGTCTCC : GTGTAAGATT : CAGGTACTGAAATTTTTGGAGAGGGATTCCATACCATGGACGGAGGAAGAAAATGGCACAGTGCTTGTGATAAGAGTGGATGTGATAGATCCGCGGAAAATGACTTTTGCTAAAAAATCAACTGCCAGAGTCCGATAAATACATCACTGAATAGATCATTGTTCTAAAGCATGAATTTTGTATCAACTTGGATCTTGTGAAATGCTTTGATGCTTCTGCATTTTTTATAACCACAAGGAACAACCTTGGCCTTGCTACCAAAAAGACTTGTATTTGATTCTTTAATTTCTCTTCTTAATTCTCAAGCCGGTGAGCAAGTTTTGCTTAGGCACCGATTTACTTGGTAAAGACTAATAGCAAATTGATTTCAGAAGTACATTATATGAAACATGCAATGCTTTGAC</gDNA_template>
            <first_frame> C  L  S  P  H  S  F  F  F  S  P  S  F  I  V  P  S  F  L  L  R  K  A  S  G  *  V  *  R  V  N  N  I  L  F  E  W  R  E  P  I  K  N  F  I  K  A  T  S  F  G  S  H  S  L  S  I  I  G  R  Q  V  Y  T  :  R  F  L  F  H  L  I  L  Q  G  *  R  W  R  H  L  L  R  Q  S  C  L  L  M  M  I  A  R  T  W  S  N  C  L  M  S  L  D  L  L  S  L  S  M  T  S  L  Q  L  I  V  K  Q  V  G  I  Q  L  L  Q  V  I  Y  L  E  I  R  N  L  A  A  P  E  L  L  T  L  R  W  K  K  T  *  R  I  P  *  L  *  L  L  N  L  R  K  *  G  T  L  *  Y  R  H  L  H  L  Y  L  R  L  M  P  R  E  L  V  P  G  H  Q  S  K  K  S  Y  Q  C  L  W  G  L  S  Q  A  *  S  Q  K  T  I  *  R  I  G  H  *  L  Q  K  L  L  R  E  S  S  H  *  N  *  A  Q  M  I  S  *  P  Q  S  *  G  R  R  K  L  H  *  V  L  Q  L  *  V  K  P  C  P  A  V  *  R  S  S  S  S  T  C  W  E  A  D  F  L  L  T  G  V  *  L  E  M  L  L  :  V  N  A  A  T  I  *  T  R :   V  W  I  S  C  *  I  C  P  H  Q  L  W  E  R  A  M  I  L  *  I  *  V  S  R  N :   L  W  R  V  Q  I  L  H  Q  L  Y  Q  K  R  H  L  Q  *  Q  I  Q  P  S   : V  P  K  Q  M  R  R  L  K  M  G  S  S  Y  L  *  R  S  R  K  G  M  R  F  K  R  K  F  C  M  H  C  L  M  Y  L  Q  L  Q  D  M  I  M  W  M  K  *  F  V  R  *  R  K  L  G  S  L  V  D  *  I  S  L  *  I  N  H  Y  R  R  L  *  N  A  R  F  L  S  G  H  H  K  V  M  Q  K  :  M  V  R  R  M  K  K  A  T  K  F  F  G  K  L  *  R  S  T  G  L  Q  *  K  S  T  I  M  Q :   L  L  K  H  S  P  K  E  I  M  I  K  H  A  N  S  W  K  R :   D  N  F  S  *  R  R  R  K  *  R  M  K  N  P  L  K  S  F  L  K  P   : V  A  V  P  A  K  K  L  *  H  S  T  F  T  I  W  S  Q  R  M  Q  C  A  Y  S  N  F  S  *  L  L  F  V  D  S  R  :  L  S  N  F  F  C  I  *   : V  C  P  L  N  R :   C  *  D  V  S  :  V  *  D   : S  G  T  E  I  F  G  E  G  F  H  T  M  D  G  G  R  K  W  H  S  A  C  D  K  S  G  C  D  R  S  A  E  N  D  F  C  *  K  I  N  C  Q  S  P  I  N  T  S  L  N  R  S  L  F  *  S  M  N  F  V  S  T  W  I  L  *  N  A  L  M  L  L  H  F  L  *  P  Q  G  T  T  L  A  L  L  P  K  R  L  V  F  D  S  L  I  S  L  L  N  S  Q  A  G  E  Q  V  L  L  R  H  R  F  T  W  *  R  L  I  A  N  *  F  Q  K  Y  I  I  *  N  M  Q  C  F  D </first_frame>
            <second_frame>  V  S  L  L  T  L  S  S  F  L  L  P  S  *  F  L  P  S  F  S  E  K  L  A  V  E  S  E  E  *  T  I  Y  C  S  N  G  E  S  R  *  K  T  S  L  K  L  L  R  L  A  L  I  L  Y  L  S  S  A  G  K  F  I  H :   G  S  Y  F  I  L  Y  C  K  D  E  D  G  G  T  S  F  D  N  L  V  Y  *  *  *  *  Q  E  P  G  A  I  A  *  C  L  W  I  C  C  L  S  R  *  H  R  C  S  L  L  *  S  R  S  G  S  N  Y  C  R  *  Y  T  W  R  S  E  T  *  Q  L  R  N  Y  *  L  *  D  G  R  K  H  R  G  F  R  D  S  D  F  *  I  *  G  S  R  G  L  Y  D  I  D  I  C  I  C  I  *  D  *  C  Q  E  S  W  S  Q  V  I  K  A  K  K  V  I  S  V  Y  G  D  C  L  K  H  D  P  K  R  L  S  D  E  *  A  T  N  Y  R  N  F  Y  E  N  Q  A  T  E  I  K  R  R  *  F  L  N  P  R  A  K  G  G  E  S  S  I  R  C  C  S  Y  E  *  N  P  A  Q  Q  C  R  G  V  P  L  Q  H  A  G  K  R  I  F  S  *  Q  E  C  N  W  R  C  C  W :   S  M  Q  L  R  S  E  Q   : E  Y  G  *  A  A  R  Y  V  R  I  N  F  G  K  E  R  *  Y  Y  K  Y  R  C  Q  E   : I  C  G  E  F  R  F  C  I  S  C  I  K  R  D  I  F  N  D  R  S  S  H  P  :  F  Q  S  K  *  E  D  *  K  W  A  Q  V  I  Y  E  G  A  G  K  V  *  D  S  K  G  S  S  A  C  I  V  *  C  T  C  S  F  K  I  *  *  C  G  *  S  D  S  S  G  E  G  S  W  E  V  *  *  I  K  S  R  C  R  *  T  I  T  G  D  F  R  T  P  D  S  Y  Q  D  T  T  K  *  C  K  K :   W  *  G  G  *  R  K  L  R  S  S  S  E  S  C  K  G  V  L  D  Y  N  E  R  V  L  *  C   : S  F  *  S  I  L  Q  R  R  S  *  S  S  T  Q  I  P  G  R   : G  T  I  F  H  D  E  G  A  S  D  G  *  K  I  L  S  K  A  S  *  N  Q  :  L  Q  F  Q  Q  R  N  C  D  T  R  P  S  R  F  G  A  K  G  C  S  A  L  T  Q  T  S  V  D  F  S  L  W  I  L  V :   Y  P  T  S  S  A  Y  K  :  F  V  P  *  T   : D  A  E  M  S  P :   C  K  I  :  Q  V  L  K  F  L  E  R  D  S  I  P  W  T  E  E  E  N  G  T  V  L  V  I  R  V  D  V  I  D  P  R  K  M  T  F  A  K  K  S  T  A  R  V  R  *  I  H  H  *  I  D  H  C  S  K  A  *  I  L  Y  Q  L  G  S  C  E  M  L  *  C  F  C  I  F  Y  N  H  K  E  Q  P  W  P  C  Y  Q  K  D  L  Y  L  I  L  *  F  L  F  L  I  L  K  P  V  S  K  F  C  L  G  T  D  L  L  G  K  D  *  *  Q  I  D  F  R  S  T  L  Y  E  T  C  N  A  L   </second_frame>
            <third_frame>   S  L  S  S  L  F  L  L  F  S  F  L  H  S  S  F  L  P  S  P  K  S  *  R  L  S  L  K  S  E  Q  Y  I  V  R  M  E  R  A  D  K  K  L  H  *  S  Y  F  V  W  L  S  F  S  I  Y  H  R  P  A  S  L  Y   : T  V  L  I  S  S  Y  T  A  R  M  K  M  E  A  P  P  S  T  I  L  F  T  D  D  D  S  K  N  L  E  Q  L  L  D  V  F  G  S  V  V  S  L  D  D  I  A  A  A  Y  C  K  A  G  R  D  P  I  I  A  G  D  I  L  G  D  Q  K  P  S  S  S  G  T  T  N  S  E  M  E  E  N  I  E  D  S  V  T  L  T  S  E  F  E  E  V  G  D  S  M  I  S  T  S  A  S  V  S  E  I  D  A  K  R  V  G  P  R  S  S  K  Q  K  K  L  S  V  S  M  G  T  V  S  S  M  I  P  K  D  Y  L  T  N  R  P  L  I  T  E  T  S  T  R  I  K  P  L  K  L  S  A  D  D  F  L  T  P  E  L  R  E  E  K  A  P  L  G  A  A  A  M  S  E  T  L  P  S  S  V  E  E  F  L  F  N  M  L  G  S  G  F  S  L  D  R  S  V  I  G  D  V  V   : G  Q  C  S  Y  D  L  N  K  :  S  M  D  K  L  L  D  M  S  A  S  T  L  G  K  S  D  D  I  I  N  I  G  V  K  K  :  S  V  E  S  S  D  F  A  S  V  V  S  K  E  T  S  S  M  T  D  P  A  I  R :   S  K  A  N  E  K  T  K  N  G  L  K  L  S  M  K  E  Q  E  R  Y  E  I  Q  K  E  V  L  H  A  L  F  D  V  P  A  A  S  R  Y  D  N  V  D  E  V  I  R  P  V  K  E  V  G  K  S  S  R  L  N  L  V  V  D  K  P  L  Q  E  T  L  E  R  Q  I  L  I  R  T  P  Q  S  D  A  K   : N  G  E  E  D  E  E  S  Y  E  V  L  R  K  A  V  K  E  Y  W  I  T  M  K  E  Y  Y  N  A  :  A  S  E  A  F  S  K  G  D  H  D  Q  A  R  K  F  L  E  E  :  G  Q  F  F  M  T  K  A  Q  V  T  D  E  K  S  S  Q  K  L  L  E  T  S :   C  S  S  S  K  E  I  V  T  L  D  L  H  D  L  E  P  K  D  A  V  R  L  L  K  L  Q  L  T  S  L  C  G  F  S   : S  I  Q  L  L  L  H  I  S :   L  S  L  E  Q  :  M  L  R  C  L   : R  V  R  F :   R  Y  *  N  F  W  R  G  I  P  Y  H  G  R  R  K  K  M  A  Q  C  L  *  *  E  W  M  *  *  I  R  G  K  *  L  L  L  K  N  Q  L  P  E  S  D  K  Y  I  T  E  *  I  I  V  L  K  H  E  F  C  I  N  L  D  L  V  K  C  F  D  A  S  A  F  F  I  T  T  R  N  N  L  G  L  A  T  K  K  T  C  I  *  F  F  N  F  S  S  *  F  S  S  R  *  A  S  F  A  *  A  P  I  Y  L  V  K  T  N  S  K  L  I  S  E  V  H  Y  M  K  H  A  M  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0137J06.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36645" stop="36699"/>
                    <exon start="37712" stop="38347"/>
                    <exon start="38739" stop="38764"/>
                    <exon start="39602" stop="39679"/>
                    <exon start="41305" stop="41375"/>
                    <exon start="41506" stop="41762"/>
                    <exon start="42423" stop="42508"/>
                    <exon start="42645" stop="42701"/>
                    <exon start="43244" stop="43311"/>
                    <exon start="43404" stop="43510"/>
                    <exon start="43924" stop="43948"/>
                    <exon start="44009" stop="44024"/>
                    <exon start="44162" stop="44177"/>
                    <exon start="44371" stop="44380"/>
                    <exon start="45532" stop="45541"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1515</number_coding_nucleotides>
                  <number_encoded_amino_acids>505</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYFVWLSFSIYHRPASLYTVLISSYTARMKMEAPPSTILFTDDDSKNLEQLLDVFGSVVSLDDIAAAYCKAGRDPIIAGDILGDQKPSSSGTTNSEMEENIEDSVTLTSEFEEVGDSMISTSASVSEIDAKRVGPRSSKQKKLSVSMGTVSSMIPKDYLTNRPLITETSTRIKPLKLSADDFLTPELREEKAPLGAAAMSETLPSSVEEFLFNMLGSGFSLDRSVIGDVVGQCSYDLNKSMDKLLDMSASTLGKSDDIINIGVKKSVESSDFASVVSKETSSMTDPAIRSKANEKTKNGLKLSMKEQERYEIQKEVLHALFDVPAASRYDNVDEVIRPVKEVGKSSRLNLVVDKPLQETLERQILIRTPQSDAKNGEEDEESYEVLRKAVKEYWITMKEYYNAASEAFSKGDHDQARKFLEEGQFFMTKAQVTDEKSSQKLLETSCSSSKEIVTLDLHDLEPKDAVRLLKLQLTSLCGFSSIQLLLHISLSLEQMLRCLRVRFRY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="43393" e_stop="43510"/>
            <exon e_start="43924" e_stop="43948"/>
            <exon e_start="44009" e_stop="44024"/>
            <exon e_start="44162" e_stop="44177"/>
            <exon e_start="44371" e_stop="44380"/>
            <exon e_start="45532" e_stop="45938"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.745" acc_prob="0.000" e_score="0.949"/>
          <exon-intron don_prob="0.987" acc_prob="0.991" e_score="0.640"/>
          <exon-intron don_prob="0.000" acc_prob="0.883" e_score="0.312"/>
          <exon-intron don_prob="0.000" acc_prob="0.577" e_score="0.688"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.600"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="43393" e_stop="43510" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="0.745" acc_prob="0.000">
            <gDNA_intron_boundary i_start="43511" i_stop="43923" i_length="413"/>
          </intron>
          <exon e_serial="2" e_score="0.640">
            <gDNA_exon_boundary e_start="43924" e_stop="43948" e_length="25"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.991">
            <gDNA_intron_boundary i_start="43949" i_stop="44008" i_length="60"/>
          </intron>
          <exon e_serial="3" e_score="0.312">
            <gDNA_exon_boundary e_start="44009" e_stop="44024" e_length="16"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.883">
            <gDNA_intron_boundary i_start="44025" i_stop="44161" i_length="137"/>
          </intron>
          <exon e_serial="4" e_score="0.688">
            <gDNA_exon_boundary e_start="44162" e_stop="44177" e_length="16"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.577">
            <gDNA_intron_boundary i_start="44178" i_stop="44370" i_length="193"/>
          </intron>
          <exon e_serial="5" e_score="0.600">
            <gDNA_exon_boundary e_start="44371" e_stop="44380" e_length="10"/>
          </exon>
          <intron i_serial="5" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44381" i_stop="45531" i_length="1151"/>
          </intron>
          <exon e_serial="6" e_score="0.993">
            <gDNA_exon_boundary e_start="45532" e_stop="45938" e_length="407"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43393" stop="43510"/>
              <exon start="43924" stop="43948"/>
              <exon start="44009" stop="44024"/>
              <exon start="44162" stop="44177"/>
              <exon start="44371" stop="44380"/>
              <exon start="45532" stop="45938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542942" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCAACCTTAGTTGCAGTTCCAGCAAAGAAATTGTGACACTCGACCTTCACGATTTGGAGCCAAAGGATGCAGTGCGCTTACTCAAACTTCAGTTGACTTCTCTTTGTGGATTCTCGT : CTATCCAACTTCTTCTGCATATAAG : TTTGTCCCTTGAACAG : ATGCTGAGATGTCTCC : GTGTAAGATT : CAGGTACTGAAATTTTTGGAGAGGGATTCCATACCATGGACGGAGGAAGAAAATGGCACAGTGCTTGTGATAAGAGTGGATGTGATAGATCCGCGGAAAATGACTTTTGCTAAAAAATCAACTGCCAGAGTCCGATAAATACATCACTGAATAGATCATTGTTCTAAAGCATGAATTTTGTATCAACTTGGATCTTGTGAAATGCTTTGATGCTTCTGCATTTTTTATAACCACAAGGAACAACCTTGGCCTTGCTACCAAAAAGACTTGTATTTGATTCTTTAATTTCTCTTCTTAATTCTCAAGCCGGTGAGCAAGTTTTGCTTAGGCACCGATTTACTTGGTAAAGACTAATAGCAAATTGATTTCAGAAGTACATTATATGAAACATGCAATGCTTTGACTTA</gDNA_template>
            <first_frame> S  N  L  S  C  S  S  S  K  E  I  V  T  L  D  L  H  D  L  E  P  K  D  A  V  R  L  L  K  L  Q  L  T  S  L  C  G  F  S   : S  I  Q  L  L  L  H  I  S :   L  S  L  E  Q  :  M  L  R  C  L   : R  V  R  F :   R  Y  *  N  F  W  R  G  I  P  Y  H  G  R  R  K  K  M  A  Q  C  L  *  *  E  W  M  *  *  I  R  G  K  *  L  L  L  K  N  Q  L  P  E  S  D  K  Y  I  T  E  *  I  I  V  L  K  H  E  F  C  I  N  L  D  L  V  K  C  F  D  A  S  A  F  F  I  T  T  R  N  N  L  G  L  A  T  K  K  T  C  I  *  F  F  N  F  S  S  *  F  S  S  R  *  A  S  F  A  *  A  P  I  Y  L  V  K  T  N  S  K  L  I  S  E  V  H  Y  M  K  H  A  M  L  *  L  </first_frame>
            <second_frame>  P  T  L  V  A  V  P  A  K  K  L  *  H  S  T  F  T  I  W  S  Q  R  M  Q  C  A  Y  S  N  F  S  *  L  L  F  V  D  S  R  :  L  S  N  F  F  C  I  *   : V  C  P  L  N  R :   C  *  D  V  S  :  V  *  D   : S  G  T  E  I  F  G  E  G  F  H  T  M  D  G  G  R  K  W  H  S  A  C  D  K  S  G  C  D  R  S  A  E  N  D  F  C  *  K  I  N  C  Q  S  P  I  N  T  S  L  N  R  S  L  F  *  S  M  N  F  V  S  T  W  I  L  *  N  A  L  M  L  L  H  F  L  *  P  Q  G  T  T  L  A  L  L  P  K  R  L  V  F  D  S  L  I  S  L  L  N  S  Q  A  G  E  Q  V  L  L  R  H  R  F  T  W  *  R  L  I  A  N  *  F  Q  K  Y  I  I  *  N  M  Q  C  F  D  L </second_frame>
            <third_frame>   Q  P  *  L  Q  F  Q  Q  R  N  C  D  T  R  P  S  R  F  G  A  K  G  C  S  A  L  T  Q  T  S  V  D  F  S  L  W  I  L  V :   Y  P  T  S  S  A  Y  K  :  F  V  P  *  T   : D  A  E  M  S  P :   C  K  I  :  Q  V  L  K  F  L  E  R  D  S  I  P  W  T  E  E  E  N  G  T  V  L  V  I  R  V  D  V  I  D  P  R  K  M  T  F  A  K  K  S  T  A  R  V  R  *  I  H  H  *  I  D  H  C  S  K  A  *  I  L  Y  Q  L  G  S  C  E  M  L  *  C  F  C  I  F  Y  N  H  K  E  Q  P  W  P  C  Y  Q  K  D  L  Y  L  I  L  *  F  L  F  L  I  L  K  P  V  S  K  F  C  L  G  T  D  L  L  G  K  D  *  *  Q  I  D  F  R  S  T  L  Y  E  T  C  N  A  L  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0137J06.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43393" stop="43510"/>
                    <exon start="43924" stop="43948"/>
                    <exon start="44009" stop="44024"/>
                    <exon start="44162" stop="44177"/>
                    <exon start="44371" stop="44380"/>
                    <exon start="45532" stop="45541"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNLSCSSSKEIVTLDLHDLEPKDAVRLLKLQLTSLCGFSSIQLLLHISLSLEQMLRCLRVRFRY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="50024" PGL_stop="48262"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50024" e_stop="49955"/>
            <exon e_start="49530" e_stop="49347"/>
            <exon e_start="48723" e_stop="48650"/>
            <exon e_start="48569" e_stop="48456"/>
            <exon e_start="48376" e_stop="48262"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.667" acc_prob="0.758" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.991"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50024" e_stop="49955" e_length="70"/>
          </exon>
          <intron i_serial="1" don_prob="0.667" acc_prob="0.758">
            <gDNA_intron_boundary i_start="49954" i_stop="49531" i_length="424"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49530" e_stop="49347" e_length="184"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49346" i_stop="48724" i_length="623"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48723" e_stop="48650" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.968">
            <gDNA_intron_boundary i_start="48649" i_stop="48570" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="48569" e_stop="48456" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="48455" i_stop="48377" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="48376" e_stop="48262" e_length="115"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50024" stop="49955"/>
              <exon start="49530" stop="49347"/>
              <exon start="48723" stop="48650"/>
              <exon start="48569" stop="48456"/>
              <exon start="48376" stop="48262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325364" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTGTTGAGGATATCGCAGTTGATAAGTCTATCCATGGCTTAATTAACTCTCGATCTTTGGTCTTAAAG : AGATATGTAGCTGATGTTGGCAAGTCATGGGGAGTGTTGATTGTTTGTGGAGGAATTTTGCCAGTTTTTCTATCAGTGATATGGCTTCTGATGATTCGTCACTTTGTGGCTGCAATGCCTTGGATAACTGTCGTCCTCTTTAATGGCCTCATAGTTTCAGTCACAATGTTCTACTATCTAAAAG : CTGGATGGATAGGGAACGACCCTATCTCCCCCATCATTGGTGAACATGATCCGTATTATCATGTATCTGCAAGG : GAAATAAGTCATCTCCATGCTGCTGCTGTTATCATGACTGCTGTAATGATTATTTCGGTCTTGTCATCCATCGCTATAGTGCGTCGTATACTTATGGCTACTTCAGTCCTGAAG : GTAGCTGCTAAGGTCATTGGAGAAGTACAAGCATTAATAATTTTCCCCATCATTCCGTATGCTATCCTAGCAATCTTCTACATGTTTTGGTTTTCAGCTGCTCTTCATCTTTTTA</gDNA_template>
            <first_frame> H  C  *  G  Y  R  S  *  *  V  Y  P  W  L  N  *  L  S  I  F  G  L  K   : E  I  C  S  *  C  W  Q  V  M  G  S  V  D  C  L  W  R  N  F  A  S  F  S  I  S  D  M  A  S  D  D  S  S  L  C  G  C  N  A  L  D  N  C  R  P  L  *  W  P  H  S  F  S  H  N  V  L  L  S  K  S :   W  M  D  R  E  R  P  Y  L  P  H  H  W  *  T  *  S  V  L  S  C  I  C  K   : G  N  K  S  S  P  C  C  C  C  Y  H  D  C  C  N  D  Y  F  G  L  V  I  H  R  Y  S  A  S  Y  T  Y  G  Y  F  S  P  E   : G  S  C  *  G  H  W  R  S  T  S  I  N  N  F  P  H  H  S  V  C  Y  P  S  N  L  L  H  V  L  V  F  S  C  S  S  S  F   </first_frame>
            <second_frame>  I  V  E  D  I  A  V  D  K  S  I  H  G  L  I  N  S  R  S  L  V  L  K  :  R  Y  V  A  D  V  G  K  S  W  G  V  L  I  V  C  G  G  I  L  P  V  F  L  S  V  I  W  L  L  M  I  R  H  F  V  A  A  M  P  W  I  T  V  V  L  F  N  G  L  I  V  S  V  T  M  F  Y  Y  L  K   : A  G  W  I  G  N  D  P  I  S  P  I  I  G  E  H  D  P  Y  Y  H  V  S  A  R  :  E  I  S  H  L  H  A  A  A  V  I  M  T  A  V  M  I  I  S  V  L  S  S  I  A  I  V  R  R  I  L  M  A  T  S  V  L  K  :  V  A  A  K  V  I  G  E  V  Q  A  L  I  I  F  P  I  I  P  Y  A  I  L  A  I  F  Y  M  F  W  F  S  A  A  L  H  L  F  </second_frame>
            <third_frame>   L  L  R  I  S  Q  L  I  S  L  S  M  A  *  L  T  L  D  L  W  S  *  R :   D  M  *  L  M  L  A  S  H  G  E  C  *  L  F  V  E  E  F  C  Q  F  F  Y  Q  *  Y  G  F  *  *  F  V  T  L  W  L  Q  C  L  G  *  L  S  S  S  L  M  A  S  *  F  Q  S  Q  C  S  T  I  *  K  :  L  D  G  *  G  T  T  L  S  P  P  S  L  V  N  M  I  R  I  I  M  Y  L  Q  G :   K  *  V  I  S  M  L  L  L  L  S  *  L  L  *  *  L  F  R  S  C  H  P  S  L  *  C  V  V  Y  L  W  L  L  Q  S  *  R :   *  L  L  R  S  L  E  K  Y  K  H  *  *  F  S  P  S  F  R  M  L  S  *  Q  S  S  T  C  F  G  F  Q  L  L  F  I  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0137J06.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50023" stop="49955"/>
                    <exon start="49530" stop="49347"/>
                    <exon start="48723" stop="48650"/>
                    <exon start="48569" stop="48456"/>
                    <exon start="48376" stop="48263"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVEDIAVDKSIHGLINSRSLVLKRYVADVGKSWGVLIVCGGILPVFLSVIWLLMIRHFVAAMPWITVVLFNGLIVSVTMFYYLKAGWIGNDPISPIIGEHDPYYHVSAREISHLHAAAVIMTAVMIISVLSSIAIVRRILMATSVLKVAAKVIGEVQALIIFPIIPYAILAIFYMFWFSAALHLF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="65558" PGL_stop="63569"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65558" e_stop="65452"/>
            <exon e_start="64103" e_stop="63569"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.914" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65558" e_stop="65452" e_length="107"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.914">
            <gDNA_intron_boundary i_start="65451" i_stop="64104" i_length="1348"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64103" e_stop="63569" e_length="535"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65558" stop="65452"/>
              <exon start="64103" stop="63590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65558" stop="65452"/>
              <exon start="64103" stop="63590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65557" stop="65452"/>
              <exon start="64103" stop="63599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65483" stop="65452"/>
              <exon start="64103" stop="63569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65483" stop="65452"/>
              <exon start="64103" stop="63569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688527" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATCCTCCTCCATTCAATTTTTCATCTTTTTTCTCACCGTCTCTTTACCTTCGCTTTCTGCAATTCGCCATTGTTGAAACTTCGTCCTTACGTTTTTCATCTATTG : ACCTCATGGCTGTGGAACAAAATTTTGTTGATGAAGATATGTTCACTTTTGTATCTGAAGAAGATGTTTCCCTTGAGAAGGGGAGTGCAATTCCAGTTCCAGTTCCAACATCAAGTTCTGACAATATAACAGGAGGTTATGATTGCAATATTTGTCTCGACTCGGCACACGATCCTGTTGTCACCCTCTGCGGACACCTCTACTGCTGGCCTTGCATTTACAAGTGGCTTCAAGTTGATAGATCTACTCCGGGATCAGAAGAGAAATGTAAATGTCCAGTCTGTAAGGCTCACATCTCAAACTCATCGCTGGTACCTCTTTATGGCCGTGGAACATCATCCCCAGAATCTGAATCCAAGAAGTCTCAACGGGATGTTGTAGTACCACGCAGGCCTCAAGCCATCGAGATAGCAACTCTCGTTAATTCATTGTCTCCAGCTTCTCACGTGAGTCAGCAACTTCATCACAGACGATCCGTCCCCTCTGCCTTTGGTAGCTATGCTGCTTTGGCTCCATCCAGCTTTGGGGGTACTTC</gDNA_template>
            <first_frame> L  S  S  S  I  Q  F  F  I  F  F  L  T  V  S  L  P  S  L  S  A  I  R  H  C  *  N  F  V  L  T  F  F  I  Y  * :   P  H  G  C  G  T  K  F  C  *  *  R  Y  V  H  F  C  I  *  R  R  C  F  P  *  E  G  E  C  N  S  S  S  S  S  N  I  K  F  *  Q  Y  N  R  R  L  *  L  Q  Y  L  S  R  L  G  T  R  S  C  C  H  P  L  R  T  P  L  L  L  A  L  H  L  Q  V  A  S  S  *  *  I  Y  S  G  I  R  R  E  M  *  M  S  S  L  *  G  S  H  L  K  L  I  A  G  T  S  L  W  P  W  N  I  I  P  R  I  *  I  Q  E  V  S  T  G  C  C  S  T  T  Q  A  S  S  H  R  D  S  N  S  R  *  F  I  V  S  S  F  S  R  E  S  A  T  S  S  Q  T  I  R  P  L  C  L  W  *  L  C  C  F  G  S  I  Q  L  W  G  Y  F </first_frame>
            <second_frame>  Y  P  P  P  F  N  F  S  S  F  F  S  P  S  L  Y  L  R  F  L  Q  F  A  I  V  E  T  S  S  L  R  F  S  S  I   : D  L  M  A  V  E  Q  N  F  V  D  E  D  M  F  T  F  V  S  E  E  D  V  S  L  E  K  G  S  A  I  P  V  P  V  P  T  S  S  S  D  N  I  T  G  G  Y  D  C  N  I  C  L  D  S  A  H  D  P  V  V  T  L  C  G  H  L  Y  C  W  P  C  I  Y  K  W  L  Q  V  D  R  S  T  P  G  S  E  E  K  C  K  C  P  V  C  K  A  H  I  S  N  S  S  L  V  P  L  Y  G  R  G  T  S  S  P  E  S  E  S  K  K  S  Q  R  D  V  V  V  P  R  R  P  Q  A  I  E  I  A  T  L  V  N  S  L  S  P  A  S  H  V  S  Q  Q  L  H  H  R  R  S  V  P  S  A  F  G  S  Y  A  A  L  A  P  S  S  F  G  G  T   </second_frame>
            <third_frame>   I  L  L  H  S  I  F  H  L  F  S  H  R  L  F  T  F  A  F  C  N  S  P  L  L  K  L  R  P  Y  V  F  H  L  L  :  T  S  W  L  W  N  K  I  L  L  M  K  I  C  S  L  L  Y  L  K  K  M  F  P  L  R  R  G  V  Q  F  Q  F  Q  F  Q  H  Q  V  L  T  I  *  Q  E  V  M  I  A  I  F  V  S  T  R  H  T  I  L  L  S  P  S  A  D  T  S  T  A  G  L  A  F  T  S  G  F  K  L  I  D  L  L  R  D  Q  K  R  N  V  N  V  Q  S  V  R  L  T  S  Q  T  H  R  W  Y  L  F  M  A  V  E  H  H  P  Q  N  L  N  P  R  S  L  N  G  M  L  *  Y  H  A  G  L  K  P  S  R  *  Q  L  S  L  I  H  C  L  Q  L  L  T  *  V  S  N  F  I  T  D  D  P  S  P  L  P  L  V  A  M  L  L  W  L  H  P  A  L  G  V  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0137J06.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65557" stop="65452"/>
                    <exon start="64103" stop="63571"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPPPFNFSSFFSPSLYLRFLQFAIVETSSLRFSSIDLMAVEQNFVDEDMFTFVSEEDVSLEKGSAIPVPVPTSSSDNITGGYDCNICLDSAHDPVVTLCGHLYCWPCIYKWLQVDRSTPGSEEKCKCPVCKAHISNSSLVPLYGRGTSSPESESKKSQRDVVVPRRPQAIEIATLVNSLSPASHVSQQLHHRRSVPSAFGSYAALAPSSFGGT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="70541" PGL_stop="67733"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70541" e_stop="70226"/>
            <exon e_start="68629" e_stop="67959"/>
            <exon e_start="67742" e_stop="67733"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.952" e_score="0.997"/>
          <exon-intron don_prob="0.000" acc_prob="0.872" e_score="0.997"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="70541" e_stop="70226" e_length="316"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.952">
            <gDNA_intron_boundary i_start="70225" i_stop="68630" i_length="1596"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="68629" e_stop="67959" e_length="671"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.872">
            <gDNA_intron_boundary i_start="67958" i_stop="67743" i_length="216"/>
          </intron>
          <exon e_serial="3" e_score="0.700">
            <gDNA_exon_boundary e_start="67742" e_stop="67733" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70541" stop="70226"/>
              <exon start="68629" stop="68460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70540" stop="70226"/>
              <exon start="68629" stop="68092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70539" stop="70226"/>
              <exon start="68629" stop="68108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70529" stop="70226"/>
              <exon start="68629" stop="67959"/>
              <exon start="67742" stop="67733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70492" stop="70226"/>
              <exon start="68629" stop="68167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70492" stop="70226"/>
              <exon start="68629" stop="68339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70492" stop="70226"/>
              <exon start="68629" stop="68425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70491" stop="70226"/>
              <exon start="68629" stop="68272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70490" stop="70226"/>
              <exon start="68629" stop="68402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70487" stop="70226"/>
              <exon start="68629" stop="68199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70485" stop="70226"/>
              <exon start="68629" stop="68071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70485" stop="70226"/>
              <exon start="68629" stop="68073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70484" stop="70226"/>
              <exon start="68629" stop="68184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70479" stop="70226"/>
              <exon start="68629" stop="68006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70476" stop="70226"/>
              <exon start="68629" stop="68345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70466" stop="70226"/>
              <exon start="68629" stop="68452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70448" stop="70226"/>
              <exon start="68629" stop="68222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70391" stop="70226"/>
              <exon start="68629" stop="68252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70385" stop="70226"/>
              <exon start="68629" stop="68073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70376" stop="70226"/>
              <exon start="68629" stop="68264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70346" stop="70226"/>
              <exon start="68629" stop="68087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70343" stop="70226"/>
              <exon start="68629" stop="68072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373680" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70330" stop="70226"/>
              <exon start="68629" stop="68081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70318" stop="70226"/>
              <exon start="68629" stop="68163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70308" stop="70226"/>
              <exon start="68629" stop="68080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70302" stop="70226"/>
              <exon start="68629" stop="68078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70302" stop="70226"/>
              <exon start="68629" stop="68078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68582" stop="68081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68549" stop="68114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217004" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68470" stop="68081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233895" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTAAATATCCACTCGCTCTCGCTCTCCTCCCCATCTCTCCCACTATCCACACACACTCTCTATCTCTCTCTTCTCTTTCCATGGCTGCTGTGTTGGAAACCATTACAGTCCCACGCGCATCGGCGCTGCCGTCGTCATCGCTTGCTCAGGTCGCCGGTTATTCCTTCTCCGGTCCTCGTTTCTCTGTTAGCTTCTCTCAATTCAGCGGCCTTAAGATCCAGCCAATTCGCTCATCTGTATCCACTAGCTCATGCTCTAAAATCATTCCCCGAGGAGGACGAGTCGTTTGCGAAGCTCAGGATACCGCCGTGGAAG : TGGCTACTGTTAGTGATAAAACATGGAAGACACTTGTAGTTGAGTCTACTGTACCTGTACTGGTTGAATTTTGGGCTCCGTGGTGTGGTCCATGCCGAATGATCCACCCCGTCATTGATGAACTAGCGAAGGAATATGTTGGCAAGCTTACATGCTTAAAGCTGAACACAGATGAAAGTCCTTCCATTGCAACCGAATTTGGAATCCGAAGCATCCCAACCGTGATGATATTCAAGAATGGAGAGAAGAAAGATGCAATCATTGGTGCAGTTCCTAAATCAACACTTACCACCTCCATAGAAAAATTCTTGTAAAATGTTGCATATATAGATATATTATCTGGGAATTTACTCGTATTATTCCCTTTCACCCTCTAGTGCGGCGATGGTTTAAGTAAACCAGTAATGCTCCTGTATAGTTGGGTTGCATTGTGTGTTTCCCCTTACTTAAACGTTACGTTGATCGTTTCTCATGTTTAGAAATTCACTTTTTATTTATAAATGCTTTTAACAAAGCATAATACTACTCATGCTTTGATTAAAAACTCGAATATTTGGTGCCCGTAGCATCAAAACTATCACAGGCAAAGCACATATGCTATATATGTTTTTCAGTAATCTTTGGTTTTGTGAGTTCAGGTACTCACTGCTAGAGTTTTCTGGGCTGTTCAA : GGCAAAAAAA</gDNA_template>
            <first_frame> C  K  Y  P  L  A  L  A  L  L  P  I  S  P  T  I  H  T  H  S  L  S  L  S  S  L  S  M  A  A  V  L  E  T  I  T  V  P  R  A  S  A  L  P  S  S  S  L  A  Q  V  A  G  Y  S  F  S  G  P  R  F  S  V  S  F  S  Q  F  S  G  L  K  I  Q  P  I  R  S  S  V  S  T  S  S  C  S  K  I  I  P  R  G  G  R  V  V  C  E  A  Q  D  T  A  V  E   : V  A  T  V  S  D  K  T  W  K  T  L  V  V  E  S  T  V  P  V  L  V  E  F  W  A  P  W  C  G  P  C  R  M  I  H  P  V  I  D  E  L  A  K  E  Y  V  G  K  L  T  C  L  K  L  N  T  D  E  S  P  S  I  A  T  E  F  G  I  R  S  I  P  T  V  M  I  F  K  N  G  E  K  K  D  A  I  I  G  A  V  P  K  S  T  L  T  T  S  I  E  K  F  L  *  N  V  A  Y  I  D  I  L  S  G  N  L  L  V  L  F  P  F  T  L  *  C  G  D  G  L  S  K  P  V  M  L  L  Y  S  W  V  A  L  C  V  S  P  Y  L  N  V  T  L  I  V  S  H  V  *  K  F  T  F  Y  L  *  M  L  L  T  K  H  N  T  T  H  A  L  I  K  N  S  N  I  W  C  P  *  H  Q  N  Y  H  R  Q  S  T  Y  A  I  Y  V  F  Q  *  S  L  V  L  *  V  Q  V  L  T  A  R  V  F  W  A  V  Q  :  G  K  K  </first_frame>
            <second_frame>  V  N  I  H  S  L  S  L  S  S  P  S  L  P  L  S  T  H  T  L  Y  L  S  L  L  F  P  W  L  L  C  W  K  P  L  Q  S  H  A  H  R  R  C  R  R  H  R  L  L  R  S  P  V  I  P  S  P  V  L  V  S  L  L  A  S  L  N  S  A  A  L  R  S  S  Q  F  A  H  L  Y  P  L  A  H  A  L  K  S  F  P  E  E  D  E  S  F  A  K  L  R  I  P  P  W  K  :  W  L  L  L  V  I  K  H  G  R  H  L  *  L  S  L  L  Y  L  Y  W  L  N  F  G  L  R  G  V  V  H  A  E  *  S  T  P  S  L  M  N  *  R  R  N  M  L  A  S  L  H  A  *  S  *  T  Q  M  K  V  L  P  L  Q  P  N  L  E  S  E  A  S  Q  P  *  *  Y  S  R  M  E  R  R  K  M  Q  S  L  V  Q  F  L  N  Q  H  L  P  P  P  *  K  N  S  C  K  M  L  H  I  *  I  Y  Y  L  G  I  Y  S  Y  Y  S  L  S  P  S  S  A  A  M  V  *  V  N  Q  *  C  S  C  I  V  G  L  H  C  V  F  P  L  T  *  T  L  R  *  S  F  L  M  F  R  N  S  L  F  I  Y  K  C  F  *  Q  S  I  I  L  L  M  L  *  L  K  T  R  I  F  G  A  R  S  I  K  T  I  T  G  K  A  H  M  L  Y  M  F  F  S  N  L  W  F  C  E  F  R  Y  S  L  L  E  F  S  G  L  F  K :   A  K  K </second_frame>
            <third_frame>   *  I  S  T  R  S  R  S  P  P  H  L  S  H  Y  P  H  T  L  S  I  S  L  F  S  F  H  G  C  C  V  G  N  H  Y  S  P  T  R  I  G  A  A  V  V  I  A  C  S  G  R  R  L  F  L  L  R  S  S  F  L  C  *  L  L  S  I  Q  R  P  *  D  P  A  N  S  L  I  C  I  H  *  L  M  L  *  N  H  S  P  R  R  T  S  R  L  R  S  S  G  Y  R  R  G  S :   G  Y  C  *  *  *  N  M  E  D  T  C  S  *  V  Y  C  T  C  T  G  *  I  L  G  S  V  V  W  S  M  P  N  D  P  P  R  H  *  *  T  S  E  G  I  C  W  Q  A  Y  M  L  K  A  E  H  R  *  K  S  F  H  C  N  R  I  W  N  P  K  H  P  N  R  D  D  I  Q  E  W  R  E  E  R  C  N  H  W  C  S  S  *  I  N  T  Y  H  L  H  R  K  I  L  V  K  C  C  I  Y  R  Y  I  I  W  E  F  T  R  I  I  P  F  H  P  L  V  R  R  W  F  K  *  T  S  N  A  P  V  *  L  G  C  I  V  C  F  P  L  L  K  R  Y  V  D  R  F  S  C  L  E  I  H  F  L  F  I  N  A  F  N  K  A  *  Y  Y  S  C  F  D  *  K  L  E  Y  L  V  P  V  A  S  K  L  S  Q  A  K  H  I  C  Y  I  C  F  S  V  I  F  G  F  V  S  S  G  T  H  C  *  S  F  L  G  C  S   : R  Q  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0137J06.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70541" stop="70226"/>
                    <exon start="68629" stop="68316"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CKYPLALALLPISPTIHTHSLSLSSLSMAAVLETITVPRASALPSSSLAQVAGYSFSGPRFSVSFSQFSGLKIQPIRSSVSTSSCSKIIPRGGRVVCEAQDTAVEVATVSDKTWKTLVVESTVPVLVEFWAPWCGPCRMIHPVIDELAKEYVGKLTCLKLNTDESPSIATEFGIRSIPTVMIFKNGEKKDAIIGAVPKSTLTTSIEKFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 117 chains have been computed
$ 
$ memory statistics:
$ 185360 bytes spliced alignments in total
$ 86 spliced alignments have been stored
$ 2155 bytes was the average size of a spliced alignment
$ 15504 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1938 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 133 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-17 23:35:26
-->
