<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-08 07:38:14"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0140O20-iS6h5/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-VGIFs5/sgn_marker_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-VGIFs5/sgn_marker_seqs" ref_id="SGN-M7816-2" ref_strand="+" ref_description="SGN-M7816-2 C2_At3g20630-2 [cosii_markers]">
      <seq>gagttcttcctgcattttattgatcaagttgaacggataaactctgggacacataattttgatccatcgaggagcttcaagtttggtattgaagaacgcctccaatgttcctcaggcaaagttacttacaacagaaggaatgattatattctgtctcttaatattcctttggagaaggctgtaaataaaaaagagctagcagaatttcaaaatttgaaggctgagagagctgcaggaggaaaagaactgtctgctgatgaaattgttcgccctagagtgtcattgaaggattgcctagattgcttttcaactcctgaggaggtgcatgatttctacagcacagctttaacggctaggacaacagcaatcaaaactgcaggtttgacttcttttccagattatctggttttgcacatgcggaaatttgttatggaggaaggttgggtgccaaagaagcttgatgtctacatagatgtccctgaaaccattgacataagtagcatgcgaagtaatggtattcaaccaggagaagagctgttgcctgacagtgctgcaggggatggtgagcagtcaataaagcttctggctgacaatgatattgttgcacaacttgtttcaatgggatttaatctacttcattgtcagaaggctgcaatcaatacctccaacagtggagtagaggcagcaatggattggttacttaatcatatgagtgatccagatattgatgctcctatatcagaaaacgtgcaaaatcctgacattgatcaatctaaagttgatacgctggtttcatttggttttgaagagaaacttgcccgtaaggccctgaaggcatcgggaggtgatgttgaaaaagctactgaatggatattcagcagccctagtgccagtactgcatcagacatggatgttactaccagtagtggagctgcagttgataccttgatgcctgacggaggaggaaaatacaggctccttggattcgtgagccacatcggcacatctacccactgtggccattatgtcgctcatattaacaaagatggccggtgggtgattttcaatgatgaaaaagtcggggtctcaaaaaatccccctatggatatgggatacctctacttttttgaaagacttgagagttgaacaatggacatctcggatcaggattaaatgttgggatatgcatgcaggaccaagcaacttctggagtcagcttgctattgtcatttgttaagcaggttgaatacatacgacaaatgtctctcataacattcattgatcttagacaaattcaaatctcaagtagaagagtataaacttctttaggacctgaattttgaaagatttttcttccatacatgtacggatcattctgttctactggttctaatagattttatttattcctactcttttgttttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-iS6h5/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="42674" stop="47599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42974" g_stop="43163" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43164" i_stop="43299" i_length="136">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43300" g_stop="43357" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="248" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43358" i_stop="43425" i_length="68">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43426" g_stop="43548" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="371" r_length="123" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43549" i_stop="43832" i_length="284">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43833" g_stop="43921" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="460" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43922" i_stop="44008" i_length="87">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44009" g_stop="44098" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="550" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44099" i_stop="45197" i_length="1099">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45198" g_stop="45368" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="721" r_length="171" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45369" i_stop="45458" i_length="90">
            <donor d_prob="0.480" d_score="0.98"/>
            <acceptor a_prob="0.850" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45459" g_stop="45577" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="840" r_length="119" r_score="0.975"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="45578" i_stop="45685" i_length="108">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="45686" g_stop="45812" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="841" r_stop="967" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="45813" i_stop="46863" i_length="1051">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="46864" g_stop="47258" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="968" r_stop="1362" r_length="395" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1425" polyA_stop="1436"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-M7816-2" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>1362</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7816-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42974" e_stop="43163"/>
          <exon e_start="43300" e_stop="43357"/>
          <exon e_start="43426" e_stop="43548"/>
          <exon e_start="43833" e_stop="43921"/>
          <exon e_start="44009" e_stop="44098"/>
          <exon e_start="45198" e_stop="45368"/>
          <exon e_start="45459" e_stop="45577"/>
          <exon e_start="45686" e_stop="45812"/>
          <exon e_start="46864" e_stop="47258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTCTTCCTGCATTTTATTGATCAAGTTGAACGGATAAACTCTGGGACACCTAATTTTGATCCATCAAGGAGCTTCAAGTTTGGTATTGAAGAACGCCTCCAATGTTCCTCGGGCAAAGTCACTTACAACAGAAGGAATGATTATATTCTGTCTCTTAATATTCCTTTGGAGAGGGCTATAAATAAAAGTGAGTTTTCTCTCTTATGTAATGCTTTTTTCTTGCCATTTTCTTATATATTGTTCATTGCAAAATTTCAGCTGAGCTTGATATTAATGAGTAATACTGCCTCCATTGTGATATTTTGTTTTGTATGAAATTCCAGAAGAGCTAGCAGAATTTCAAAATTTGAAGGCTGAGAGAGCTGCAGGAGGAAAAGAACTGTGAGTTTCAAGTGACCAATACATGCTTGCCTTTCATGTACTTCAGCTAAATGTATGGGTTTTTGCAGGTCTGCTGATGAAATTGTTCGCCCTAGAGTATCATTGAAGGATTGCCTAGATTGCTTTTCAGCTCCTGAGGAGGTGCATGATTTCTACAGCACAGCTTTAACAGCTAGGACTACAGCAATCAAGTAATCTTGTTATTCTCCTCTATGAAGTTATTTCTTCAATTTTTCTCTTGTTCTGCTTGTGGCATCTCAAATTTAGTTTACCTGCACCTCGTCTGTTGTTTTAGTAGGGCCTAATATCTCGTCTTTTTGGCTTCCATACTTCTTACACAGTTGGCTGTAGAAATTATAGATGTCTTGTCTGTCAGCAGTGGATGGCTAGTGTCTGTCAGCTTTATCTATTTGCTCGACTGTCGTACTTGATGAGGCCACTTCTTTTTATCTTATTTAATTTTGTTTGTAAATAGAACTGCAGGTTTGACTTCTTTTCCAGATTATCTGGTTTTGCACATGCGGAAATTTGTTATGGAGGAAGGTTGGGTGCCAAAGAAGCTCGGTATGCTACTTTTTCTTCATCGATGTAATTCTAATGTGTAGTTTATCTTGTTATATTGCTAATCTTTTTCTCTGATGGTCCTTCTAGATGTCTACATAGATGTCCCTGAAACCATTGACATAAGTAGCATGCGAAGTAATGGTATTCAACCAGGAGAAGAGCTGTTGCCTGACAGTGGTACGAATCTCCTTGTCTTTTACTAAATTCATAGTGATCTTGTAGATAATGTCTTGTCTTCCATTTCAGCCCAAATAGTACTCTATTGCAAAGAATAATATAAGCATGTCTATCTGGTCTTGTCGCAGAAGTTGTTTTCTGCCTTGCGTCCCTTTTCTAGCTACTCAATTTTTTTCAAGAATATTTGATTGTCACTCTTATATTTGAATAATGAGGACATGAGTGTGGCAAAAACCTTTTTGGAAATAAAAAATAGTTGTGTGGAATTCTTCTTGTAAAAAATTTTTGTCGTTGTTTTGGGTGGGGAGGACGTACCATATGAGCTGGGGAGACTTTTATGAGTCTCATTCTCCTTGGGTGTTTGAAGTTTGTGACTCTTTTCTTTTGTCTGTATTCACACATTGCTAAGTGGTCTATTTCTGAATCATAAGATTTGACCTTTAGCTTGCATTAGTTTCTCTCAACCAATCTGTTAATTGCTTAATCAGGTTGTGTCTGTTTAGATAAAGTTGAACATTCATTGGAACTTAGCTTATTTAGTTCGTCCGGTGATACATGTAAAAAATGATTTGGCATCTAATTTATTTTTTATTTTGACTCTGGTTTTGTTATGCGGTCAACTTGAAGACTTTCAATTATGTTGTAGTGTTTTGGAAGTAATATTTCTTCTGTTCTAGTTTGTCTATTGAATGGGAGTAGCAAAAGCCGACAGGATAGAGTTCTGTATGCATAGAGCCATATTTAACCGACAGTATATACCTCAGAAATTCGTAGTTCATGAAATAGATTCCAGTTGCTATTTAATCTAATTCCTGCTCAGGGAATAGTTTCTTTTAGTAAGTGAGTAATTGGTGTTGCTTCTCACTCTCCAGCTAATGTTTGTTCCAAATCTGGGGTATCTGAAAGCTAAGGATGTTGTCTTAACAGCTTTTTAGTGGGTGTGTGATCAATGATGATCAATGATCATCAGTTAATTAACATCAGAAGTTTTAGCAATAGGTGCTACTTGTATGCCAAGTTCCTTTAGGGTTTGAAGCTTTTGGGTCATGTTTTGCAAGTACTAAATTGCTGCTATGTTGGATTACTTGTCCATGAACAGCTGCAGGGGATGGTGAGCAGTCAATAAAGCTTCTGGCTGACGATGATATTGTTGCACAACTTGTTTCAATGGGATTTAATCTACTTCATTGTCAGAAGGCTGCTATCAATACTTCCAACAGTGGAGTAGAGGCAGCAATGGATTGGTTACTTAATCATATGAATGATCCAGGTAGTTTTAATGTTTGCTTTCAAGCAGGGTTTACTCATATTTCTCGCCATAACTAGATACAGGGTAATTTGATGCATATTTTTTTTCCAGATATTGATGCTCCTATATCAGAAAACGTGCAAAATCCTGATATTGATCAATCTAAAGTTGATACGCTGGTTTCATTTGGTTTCGAAGAGAAACTTGCCCATAAGGCCCTGAAGGCATCGGTAAATATCTCACTTTTACTGGCGTTTACTATTTCACTGTGGGGTTCCTTGCTATTCACTGCCAATAGCATAATGTTTGTTCATTCCTTGTTTCTATCTGCTCATCAGGGAGGTGATGTTGAAAAAGCTACTGAATGGATATTCAGCAGCCCTAGTGCCAGTACTGCAGCAGACATGGATGTTACTACCAGTAGTGGAGCTGCAGTTGATACCTTGATGCCTGATGGAGGAGGAAGTAAGTTCCCTATCCTCTGGTTCTACTAGTTGTACAGCTTTGTTGCTTTTATTTGGAACTGATGATATATTCTTACCAAATCTGTGAGGCAGTGGACATTAGCCTTCTCTTAAGTGATGTAGGTGAGGAGCCTCTGTAGTGTACTGCTACAATATGTTTTTCTTTAGGCTCTCCATATTTCTGATTCTGCTTAATCAGCTTTGTTAAGGATTTTATATATAGAATGGTATGCTAGTTCTACTAAAGTTTTTCCGTTGAGCTTCCAATATTGGCTCACCTTCTCATGGGCTTAATCATCTTGGTAATGGATTTTAGAAGTGGAATGCTGTATTTACTGTCTAATTATTTTTTCCGTCATTCACACTCGAGTTTAGTTTCCTTCCGCTCTCCTTTCAAAATTCTTTACCACCACTTGTGTGGTTAGAAGTATGTTTATTTTTCTTCTCCTTTTTGTGATTTGTTAGCTGTTTCCCCTCTCTCCTCTAAGGGGCAACAATGGTTTCCAACTATTGCACCTCCAACTTACGGTAGATCATAACTCCATACCATGGTTTCTTACTTTCTGGTGGTTGGAAATGGTCAATATAGATGCCCCACGTTCTTTTCTTGATCTAAACTTCTAATTTCTTATCCGGTTGCTTTCACTAAAACCATTTTACTAATTTCTAATCCAGTTGCTTTCACTAAAATCATTTATCTTTTGAGGGCTGCAAATTAGTTTCAAAGCCAAATTATGGGTCCTGTTCTCTGGTTTTGCAATTTTGATATTTGAACTCTTTTTTAGAGAAAATCCATCAGTATTTGTTTGAATCACTTCATATATTCGGAACGTTTAAGAGCAAGGACTATTGGAACTTGACCTAACTAATCTAAAGTTTTAGGATGATAGAAAGTTCCCTACATCCCTTTAAAAGCGTTTTAGTACTTCAATTTTATTATGAATTTCATTCAATGCATCACAGTCCTTGATAGTGAGATTTGGGTTTACTTCTATATTCTTTTATGCCCACTTGAGTCTTGACCCAAGTGTATCTTTTTGGATAATTAACAGAATACAGGCTCCTGGGATTCGTGAGCCACATAGGCACATCTACCCACTGTGGCCATTATGTCGCTCATATTAACAAAGATGGCCGGTGGGTGATTTTCAACGATGAAAAAGTTGGGGTCTCAAAAAACCCCCCTATGGATATGGGATACCTCTACTTTTTTGAAAGACTTGAGAGTTGAACAATGGACATCTCGGAGCAGGATTAAATGTTGGGATATGCATTCAGGACCAAGCAACTTCTGGAGTCAGCTTGCTATTGTCATTTGTTTAGCAGGTTGAATACATACGACAAATGTCTCTCGTAACATGCATTGATCTTAGACGAATTCAAATCTCAAGTAGAAGAGTATAAACTTCTTTAGGACGTGAATTTCGAAAGTTTTTTCTTCCATACA</genome_strand>
        <mrna_strand>GAGTTCTTCCTGCATTTTATTGATCAAGTTGAACGGATAAACTCTGGGACACATAATTTTGATCCATCGAGGAGCTTCAAGTTTGGTATTGAAGAACGCCTCCAATGTTCCTCAGGCAAAGTTACTTACAACAGAAGGAATGATTATATTCTGTCTCTTAATATTCCTTTGGAGAAGGCTGTAAATAAAA........................................................................................................................................AAGAGCTAGCAGAATTTCAAAATTTGAAGGCTGAGAGAGCTGCAGGAGGAAAAGAACT....................................................................GTCTGCTGATGAAATTGTTCGCCCTAGAGTGTCATTGAAGGATTGCCTAGATTGCTTTTCAACTCCTGAGGAGGTGCATGATTTCTACAGCACAGCTTTAACGGCTAGGACAACAGCAATCAA............................................................................................................................................................................................................................................................................................AACTGCAGGTTTGACTTCTTTTCCAGATTATCTGGTTTTGCACATGCGGAAATTTGTTATGGAGGAAGGTTGGGTGCCAAAGAAGCTTG.......................................................................................ATGTCTACATAGATGTCCCTGAAACCATTGACATAAGTAGCATGCGAAGTAATGGTATTCAACCAGGAGAAGAGCTGTTGCCTGACAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAGGGGATGGTGAGCAGTCAATAAAGCTTCTGGCTGACAATGATATTGTTGCACAACTTGTTTCAATGGGATTTAATCTACTTCATTGTCAGAAGGCTGCAATCAATACCTCCAACAGTGGAGTAGAGGCAGCAATGGATTGGTTACTTAATCATATGAGTGATCCAG..........................................................................................ATATTGATGCTCCTATATCAGAAAACGTGCAAAATCCTGACATTGATCAATCTAAAGTTGATACGCTGGTTTCATTTGGTTTTGAAGAGAAACTTGCCCGTAAGGCCCTGAAGGCATCG............................................................................................................GGAGGTGATGTTGAAAAAGCTACTGAATGGATATTCAGCAGCCCTAGTGCCAGTACTGCATCAGACATGGATGTTACTACCAGTAGTGGAGCTGCAGTTGATACCTTGATGCCTGACGGAGGAGGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACAGGCTCCTTGGATTCGTGAGCCACATCGGCACATCTACCCACTGTGGCCATTATGTCGCTCATATTAACAAAGATGGCCGGTGGGTGATTTTCAATGATGAAAAAGTCGGGGTCTCAAAAAATCCCCCTATGGATATGGGATACCTCTACTTTTTTGAAAGACTTGAGAGTTGAACAATGGACATCTCGGATCAGGATTAAATGTTGGGATATGCATGCAGGACCAAGCAACTTCTGGAGTCAGCTTGCTATTGTCATTTGTTAAGCAGGTTGAATACATACGACAAATGTCTCTCATAACATTCATTGATCTTAGACAAATTCAAATCTCAAGTAGAAGAGTATAAACTTCTTTAGGACCTGAATTTTGAAAGATTTTTCTTCCATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-VGIFs5/sgn_marker_seqs" ref_id="SGN-M7816" ref_strand="+" ref_description="SGN-M7816 C2_At3g20630 [cosii_markers]">
      <seq>tagcatgcgaagtaatggtattcaaccaggagaagagctgttgcctgacagtgctgcaggggatggtgagcagtcaataaagcttctggctgacgatgatattgttgcacaacttgtttcaatgggatttaatctacttcattgtcagaaggctgctatcaatacttccaacagtggagtagaggcagcaatggattggttacttaatcatatgaatgatccagatattgatgctcctatatcagaaaacgtgcaaaatcctgatattgatcaatctaaagttgatacgctggtttcatttggtttcgaagagaaacttgcccataaggccctgaaggcatcgggaggtgatgttgaaaaagctactgaatggatattcagcagccctagtgccagtactgcagcagacatggatgttactaccagtagtggagctgcagttgataccttgatgcctgatggaggaggaaaatacaggctcctgggattcgtgagccacataggcacatctacccactgtggccattatgtcgctcatattaacaaagatggccggtgggtgattttcaacgatgaaaaagttggggtctcaaaaaacccccctatggatatgggatacctctacttttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-iS6h5/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="43746" stop="47325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44046" g_stop="44098" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44099" i_stop="45197" i_length="1099">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45198" g_stop="45368" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="224" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45369" i_stop="45458" i_length="90">
            <donor d_prob="0.480" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45459" g_stop="45577" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="343" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45578" i_stop="45685" i_length="108">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45686" g_stop="45812" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="470" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45813" i_stop="46863" i_length="1051">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46864" g_stop="47025" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="632" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-M7816" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44046" e_stop="44098"/>
          <exon e_start="45198" e_stop="45368"/>
          <exon e_start="45459" e_stop="45577"/>
          <exon e_start="45686" e_stop="45812"/>
          <exon e_start="46864" e_stop="47025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCATGCGAAGTAATGGTATTCAACCAGGAGAAGAGCTGTTGCCTGACAGTGGTACGAATCTCCTTGTCTTTTACTAAATTCATAGTGATCTTGTAGATAATGTCTTGTCTTCCATTTCAGCCCAAATAGTACTCTATTGCAAAGAATAATATAAGCATGTCTATCTGGTCTTGTCGCAGAAGTTGTTTTCTGCCTTGCGTCCCTTTTCTAGCTACTCAATTTTTTTCAAGAATATTTGATTGTCACTCTTATATTTGAATAATGAGGACATGAGTGTGGCAAAAACCTTTTTGGAAATAAAAAATAGTTGTGTGGAATTCTTCTTGTAAAAAATTTTTGTCGTTGTTTTGGGTGGGGAGGACGTACCATATGAGCTGGGGAGACTTTTATGAGTCTCATTCTCCTTGGGTGTTTGAAGTTTGTGACTCTTTTCTTTTGTCTGTATTCACACATTGCTAAGTGGTCTATTTCTGAATCATAAGATTTGACCTTTAGCTTGCATTAGTTTCTCTCAACCAATCTGTTAATTGCTTAATCAGGTTGTGTCTGTTTAGATAAAGTTGAACATTCATTGGAACTTAGCTTATTTAGTTCGTCCGGTGATACATGTAAAAAATGATTTGGCATCTAATTTATTTTTTATTTTGACTCTGGTTTTGTTATGCGGTCAACTTGAAGACTTTCAATTATGTTGTAGTGTTTTGGAAGTAATATTTCTTCTGTTCTAGTTTGTCTATTGAATGGGAGTAGCAAAAGCCGACAGGATAGAGTTCTGTATGCATAGAGCCATATTTAACCGACAGTATATACCTCAGAAATTCGTAGTTCATGAAATAGATTCCAGTTGCTATTTAATCTAATTCCTGCTCAGGGAATAGTTTCTTTTAGTAAGTGAGTAATTGGTGTTGCTTCTCACTCTCCAGCTAATGTTTGTTCCAAATCTGGGGTATCTGAAAGCTAAGGATGTTGTCTTAACAGCTTTTTAGTGGGTGTGTGATCAATGATGATCAATGATCATCAGTTAATTAACATCAGAAGTTTTAGCAATAGGTGCTACTTGTATGCCAAGTTCCTTTAGGGTTTGAAGCTTTTGGGTCATGTTTTGCAAGTACTAAATTGCTGCTATGTTGGATTACTTGTCCATGAACAGCTGCAGGGGATGGTGAGCAGTCAATAAAGCTTCTGGCTGACGATGATATTGTTGCACAACTTGTTTCAATGGGATTTAATCTACTTCATTGTCAGAAGGCTGCTATCAATACTTCCAACAGTGGAGTAGAGGCAGCAATGGATTGGTTACTTAATCATATGAATGATCCAGGTAGTTTTAATGTTTGCTTTCAAGCAGGGTTTACTCATATTTCTCGCCATAACTAGATACAGGGTAATTTGATGCATATTTTTTTTCCAGATATTGATGCTCCTATATCAGAAAACGTGCAAAATCCTGATATTGATCAATCTAAAGTTGATACGCTGGTTTCATTTGGTTTCGAAGAGAAACTTGCCCATAAGGCCCTGAAGGCATCGGTAAATATCTCACTTTTACTGGCGTTTACTATTTCACTGTGGGGTTCCTTGCTATTCACTGCCAATAGCATAATGTTTGTTCATTCCTTGTTTCTATCTGCTCATCAGGGAGGTGATGTTGAAAAAGCTACTGAATGGATATTCAGCAGCCCTAGTGCCAGTACTGCAGCAGACATGGATGTTACTACCAGTAGTGGAGCTGCAGTTGATACCTTGATGCCTGATGGAGGAGGAAGTAAGTTCCCTATCCTCTGGTTCTACTAGTTGTACAGCTTTGTTGCTTTTATTTGGAACTGATGATATATTCTTACCAAATCTGTGAGGCAGTGGACATTAGCCTTCTCTTAAGTGATGTAGGTGAGGAGCCTCTGTAGTGTACTGCTACAATATGTTTTTCTTTAGGCTCTCCATATTTCTGATTCTGCTTAATCAGCTTTGTTAAGGATTTTATATATAGAATGGTATGCTAGTTCTACTAAAGTTTTTCCGTTGAGCTTCCAATATTGGCTCACCTTCTCATGGGCTTAATCATCTTGGTAATGGATTTTAGAAGTGGAATGCTGTATTTACTGTCTAATTATTTTTTCCGTCATTCACACTCGAGTTTAGTTTCCTTCCGCTCTCCTTTCAAAATTCTTTACCACCACTTGTGTGGTTAGAAGTATGTTTATTTTTCTTCTCCTTTTTGTGATTTGTTAGCTGTTTCCCCTCTCTCCTCTAAGGGGCAACAATGGTTTCCAACTATTGCACCTCCAACTTACGGTAGATCATAACTCCATACCATGGTTTCTTACTTTCTGGTGGTTGGAAATGGTCAATATAGATGCCCCACGTTCTTTTCTTGATCTAAACTTCTAATTTCTTATCCGGTTGCTTTCACTAAAACCATTTTACTAATTTCTAATCCAGTTGCTTTCACTAAAATCATTTATCTTTTGAGGGCTGCAAATTAGTTTCAAAGCCAAATTATGGGTCCTGTTCTCTGGTTTTGCAATTTTGATATTTGAACTCTTTTTTAGAGAAAATCCATCAGTATTTGTTTGAATCACTTCATATATTCGGAACGTTTAAGAGCAAGGACTATTGGAACTTGACCTAACTAATCTAAAGTTTTAGGATGATAGAAAGTTCCCTACATCCCTTTAAAAGCGTTTTAGTACTTCAATTTTATTATGAATTTCATTCAATGCATCACAGTCCTTGATAGTGAGATTTGGGTTTACTTCTATATTCTTTTATGCCCACTTGAGTCTTGACCCAAGTGTATCTTTTTGGATAATTAACAGAATACAGGCTCCTGGGATTCGTGAGCCACATAGGCACATCTACCCACTGTGGCCATTATGTCGCTCATATTAACAAAGATGGCCGGTGGGTGATTTTCAACGATGAAAAAGTTGGGGTCTCAAAAAACCCCCCTATGGATATGGGATACCTCTACTTTTTTG</genome_strand>
        <mrna_strand>TAGCATGCGAAGTAATGGTATTCAACCAGGAGAAGAGCTGTTGCCTGACAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAGGGGATGGTGAGCAGTCAATAAAGCTTCTGGCTGACGATGATATTGTTGCACAACTTGTTTCAATGGGATTTAATCTACTTCATTGTCAGAAGGCTGCTATCAATACTTCCAACAGTGGAGTAGAGGCAGCAATGGATTGGTTACTTAATCATATGAATGATCCAG..........................................................................................ATATTGATGCTCCTATATCAGAAAACGTGCAAAATCCTGATATTGATCAATCTAAAGTTGATACGCTGGTTTCATTTGGTTTCGAAGAGAAACTTGCCCATAAGGCCCTGAAGGCATCG............................................................................................................GGAGGTGATGTTGAAAAAGCTACTGAATGGATATTCAGCAGCCCTAGTGCCAGTACTGCAGCAGACATGGATGTTACTACCAGTAGTGGAGCTGCAGTTGATACCTTGATGCCTGATGGAGGAGGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACAGGCTCCTGGGATTCGTGAGCCACATAGGCACATCTACCCACTGTGGCCATTATGTCGCTCATATTAACAAAGATGGCCGGTGGGTGATTTTCAACGATGAAAAAGTTGGGGTCTCAAAAAACCCCCCTATGGATATGGGATACCTCTACTTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-VGIFs5/sgn_marker_seqs" ref_id="SGN-M1635" ref_strand="+" ref_description="SGN-M1635 T0853 [cos_markers]">
      <seq>caacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaatttttttcacatatcgactttgtagctttgcaccactcaatcattcattcataatgcaaatatttggcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-iS6h5/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="67498" stop="68537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67798" g_stop="68225" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="431" polyA_stop="446"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-M1635" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M1635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67798" e_stop="68225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTG</genome_strand>
        <mrna_strand>CAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGCACCACTCAATCATTCATTCATAATGCAAATATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-VGIFs5/sgn_marker_seqs" ref_id="SGN-M4691" ref_strand="+" ref_description="SGN-M4691 C2_At5g54310 [cosii_markers]">
      <seq>ttattgggaagcagagctgcctccaaattatgatagagttggtattgagaatttcatccgagcaaaatatgaagagaagaggtgggtccctaaggatgggatacaaaaatcgccttccagggttcaagaagagagagcttcggtgcagtggcaacaaaacaatgatagagctgggcgtggacatgcaactatctcaggaggcgcatctgacgagaggaaaattaatcaagctcctaaaatgaagcaagatgtaccttctgctagagtcagtataccagtgccccctaaagggccagaacatgtaacttcaggtcaggttgctaaccaggcaagtcagaaagcagagccagttgcagtcgctgaatctgcaaagcaggtcgcagaagctaccaatcctcctaaagttgattatgctactgatctgtttgacatgctatctatggattctccaactgacaatggctcagaagcagcttctaccgatgataactcttgggcaggtttccagtctgctcaagaagcgacaaaagtagaaacaactggcgttacaaaatctgatgatcagaagtctcaatctgctgctgcttctggaatggaagatctattcaaggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-iS6h5/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="106064" stop="103449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105764" g_stop="105699" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105698" i_stop="105595" i_length="104">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105594" g_stop="105360" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="301" r_length="235" r_score="0.902"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105359" i_stop="104502" i_length="858">
            <donor d_prob="0.993" d_score="0.90"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104501" g_stop="104294" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="509" r_length="208" r_score="0.928"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104293" i_stop="103857" i_length="437">
            <donor d_prob="0.663" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103856" g_stop="103749" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="614" r_length="105" r_score="0.880"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-M4691" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M4691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105764" e_stop="105699"/>
          <exon e_start="105594" e_stop="105360"/>
          <exon e_start="104501" e_stop="104294"/>
          <exon e_start="103856" e_stop="103749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCGAGCAAAGTACGTGCTTACTAATTCTCTAACAATTAGTACCTTTATGCAGTCTTCTTTCACTCAATCTAGTATTTGATGCTTATTCAAGACATTTCCTGTGTTTTGATAAGATATGAAGAGAAGAGGTGGGTCCCTAAGGATGGGATTCAAAAATCACCTTCCAGGGTTCAAGAAGAGAGGGCTTCGGTGCAATGGCAACAAAACAATGATAGAAGTGGGCGTATACATGCAGCTAGCTCAGGATGTGCATCTGACGAGAGGAAAAATATTCAAGCCTCGAAAGTGAAGCAAGATGTACCTGCTGCTAGAGTCAGTATACCAGTGCCTCCTAGAGGACCAGAGCATGTATGTTAAACTTATTCGTCAAACTGTTTTTGTCCATGCTACTTTCCCTTCCAGGTGTAGTATTATTGTTTCAATGTTCTATTTTGAATGAAATCTTATTCTTTTGCTGGTTATCTACCCGACTTGCCTATGTATGTGAGCTGATTGGGCCGTTAGCTCTTGAGTTATTGGTTCACTGTAAGGGTCGTTTGGTAGAGTGTATTAATATAATGCAAAATAGAGTATACTAGTAATGCTTGCATTAGCAATTCAGTATTAGTTATGCTTGCATTAATTATACATAGATTATTTTTATGCATTGTTTGGTTTGATGCATTAAAATAGAATGCATTACATTAAAAGAAATATTTACAAAGATACCCTTCACTATTATGGTAGAAAAGATATAACAAAGGTATTGAGGGGCAATTGGGTGTTTAATTGAGTTAATGCATGCATTAAAAGCATTGCATTGTTAGAAATATATGCTATTAGCAATACACATCTTAATGCACAATAGAGTGTGTAACTAATGCAAGCATTAGTTATACATAGGTTGGAAAAGAGTACCAAACAAGTTACTAGCAACACACAAGGCTAATGCATGTATTATTTTTTTAATACACTCTACCAAGTGTTCCCTAAGTGTATTTGTGTTGAATATTGATTCTTTACTCAGATTAATGAATTAAGCAGCTCTTGTTCATACTGTTTAGCTATTACATACTTGGAATCTTAGTTTTTATGTACGTGGTGTATTCATGGCCCCTGTTGGTCCTTCTGTAGTTCTGTATAACTGCTGCTAGCTGCTGTTTCTTCTGAGTTAGTTTGGATACTTTCTGGATTAGAATAGACTCTTATAGGTTTGACACCTTGCAGGTAACTTCAGGTCAGGTTGCTAACCAGACAAGTCAGAAAGCAGAGCCAGTTGCAGTCACTGAACCAGCTAAGCAGGTTCCGGAAGCTGCCAGTCCTCCTAAAGTTGATTATGCTACTGATCTATTTGACATGCTTTCTATGGATTGTCCAACTGACAATGGCTCAGAAGCAGCTTCTACCGATGATAACTCCTGGGCAGGCTTCCAGTGTATGTCAAGTCACCGTTTTGTTTGAAACGTGATTCTTTCTCTTCCAGTTTGTAACATTTAGAGGGTGTACTTGTCTTTTTCACTAGCATGGTCCATATTTTTCCAAGTGTTTTACTTCTTTTTCTGAGAGAAGACAAGTAGTTTGAGAATCAACAATAACTACACCACAGTTTCAAAAAAAGTTGGGAATGTAAATGAATACTCAGCTGAACTTTTGTCATCATCATACAAAATATATGTAACTGTGAAAAAAGTTAAATATATGAAATAATAATTATATTAGAAGTTCATATATTATGGCATATAAAGCTATGTTAAGGTCAAATACTCCAGTTAAGAATCAACAACTAGTAATTTTTCTTGGCATTTAAATTCAAGTTATCATAGTACCTATTGTTGCTCATTATCTCTTATTAAGTAAGTTGTGCCTTTGCAGCTGCTCAAGAAGCAACAAAAGCAGAAAATACTGGGGTTACAAACTCCGTTGATCAGAAGAAGTCTCAATCTGCTGCTGCTTCTGGAATTGAAGATTTATTCAAGGATT</genome_strand>
        <mrna_strand>TTATTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCGAGCAAA........................................................................................................ATATGAAGAGAAGAGGTGGGTCCCTAAGGATGGGATACAAAAATCGCCTTCCAGGGTTCAAGAAGAGAGAGCTTCGGTGCAGTGGCAACAAAACAATGATAGAGCTGGGCGTGGACATGCAACTATCTCAGGAGGCGCATCTGACGAGAGGAAAATTAATCAAGCTCCTAAAATGAAGCAAGATGTACCTTCTGCTAGAGTCAGTATACCAGTGCCCCCTAAAGGGCCAGAACAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTTCAGGTCAGGTTGCTAACCAGGCAAGTCAGAAAGCAGAGCCAGTTGCAGTCGCTGAATCTGCAAAGCAGGTCGCAGAAGCTACCAATCCTCCTAAAGTTGATTATGCTACTGATCTGTTTGACATGCTATCTATGGATTCTCCAACTGACAATGGCTCAGAAGCAGCTTCTACCGATGATAACTCTTGGGCAGGTTTCCAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTCAAGAAGCGACAAAAGTAGAAACAACTGGCGTTACAAAATCTGATGATC---AGAAGTCTCAATCTGCTGCTGCTTCTGGAATGGAAGATCTATTCAAGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-VGIFs5/sgn_marker_seqs" ref_id="SGN-M4691-3" ref_strand="+" ref_description="SGN-M4691-3 C2_At5g54310-3 [cosii_markers]">
      <seq>cccgggctgcaggaatcggcacgaggcttctcatccagttgcatttttcttttgatagatatttacgcgtcggagaggggaggaatcagatcggcgattttcattttccgatatcttctctctccgtcggtcaattcgcttaaacccttgctatcgtcaccatgaatgagaaggctaatgttactaaagagcttaatgcgaagcatagaaagatactagaaggacttcttaaattgcccgagaacagggaatgtgcagattgcaaagccaagggtcctagatgggcaagcgtgaacctgggaatatttatttgcatgcaatgctctgggatccacagaagcctaggggtgcacatatcaaaggtcagatcagctacactagacacatggcttcctgaacaagttgcatttatccattcaatgggaaatgagaggtcaaatagtttttgggaagcagagctgcctccaaattatgatagagttggtattgagaatttcatccgagcaaaatatgaagagaagaggtgggtccctaaggatgggattcaaaaatcaccttccagggttcaagaagagagggcttcggtgcaatggcaacaaagcaatgatagaagtgggcgtgtacatgcaactagctcaggaggtgcatctgacgagaggaaatatactcaagcctcgaaaatgaagcaagatgtacccgctgctagagtcagtataccagtgcctcctaaagggacagagcatgtaacttcaggtcanggtgctaaccagacaagtcagaaagcatagccagttgcagtcactgaatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-iS6h5/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="109493" stop="104134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109193" g_stop="109009" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="212" r_length="185" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109008" i_stop="107277" i_length="1732">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107276" g_stop="107218" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="271" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107217" i_stop="107080" i_length="138">
            <donor d_prob="0.217" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107079" g_stop="106989" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="362" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106988" i_stop="105939" i_length="1050">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105938" g_stop="105884" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="417" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105883" i_stop="105790" i_length="94">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105789" g_stop="105699" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="508" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105698" i_stop="105595" i_length="104">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105594" g_stop="105360" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="743" r_length="235" r_score="0.953"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="105359" i_stop="104502" i_length="858">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104501" g_stop="104434" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="744" r_stop="811" r_length="68" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-M4691-3" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M4691-3" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109193" e_stop="109009"/>
          <exon e_start="107276" e_stop="107218"/>
          <exon e_start="107079" e_stop="106989"/>
          <exon e_start="105938" e_stop="105884"/>
          <exon e_start="105789" e_stop="105699"/>
          <exon e_start="105594" e_stop="105360"/>
          <exon e_start="104501" e_stop="104434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCATCCAGTTGCATTTTTCTTTTGATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAGGTATTTTTTGTTCCGATTCATGATTTCTCTTTTGAATTTCAGTTTATTGTGGTTGATCTAGTTAGATTTGATGATGTTTGGCTAGTGTTTGAGTTTGGTTGATACATCTTTACATGGTTTTATCAGTTAATAGTTGAGATTTGGGGCTTATTGGATCCTTTTAACGCTTGTGTTCTTATGGAACTCCTATTGTAGTTTTATTCTGATAATTCGAGCAGTGAAATACTGATCTAGTTCAACTAGGTGCTTGGAATTATGATTTTGGATGTACATTTTTTCGTAATAGAAGAAGAAAAACAAATATTTACACATTACGCACACAATTGGATTAAAAAAAGGATCTTTAAACTCATGTGCTACCCGAATAAGAGATTTTGAAGAACTGTGATAGGTCTTGAGACAGACAGTCTTGTTAAATTACTGAAAGCAAGCACCTTGCTTTGTACCTCAACTTTCCGTTATTATTAACAAAGATAATATATTTTATCTTAAAGCAAGCACCTTGGTTTAAGTTTGGTTGATGCATCTTATACGCTTTTATCAGTTAATATTTGAGATTTGGGGCTTATCAGGTCCTTTTGCTCCGTTTCCTAAAATTGAACTTCTATTGCTAGTTTTATTCGTGATAATTTGAGCACTGAAATGATAATCTGGTTTAAGCAGGTGCTTGAAATTATAATTTTGGATGTTCATTTTTACCTAAATGAAAAAGAAAAACAGACACTTACTCACACTACTGGATAAAAGAAAAAAATGAGACGGACACATGTAGATTTAGTTAGTGCAATTCCAAACATAGTCAGTTGTTAAATTACTTAAAGCAAGCACCTTGCTGTGTACCTTAACTCTCCACTACTATTAGTAATCTGTCTTTATCTTGATAATTTGAATCACTTCTTTGCACATGACACCAAGACAGTGTCAATATTACATAAGGGTTAGCACTGGCTGTCCAAATCTATCTGTACAAAGAGGAATCTCTTCTTTGTAAAGAGATCTCCTTTGGCTTTCCATCTCTGTCTTTCACTCCTTTAAAAGTTCTACTGTGCCTTCCTCGCCGGATAGTCAGGGAGTGTGTGTAGGTTCTGTCTTCCAAATCACCTTCTTATTAGTCTCAAATATTCCTTTAGTTGTATATGATACATCCAAGAGACGGGTTTTAAGGATATACATCATTTCTTATTGTTACTAATTATTTAAGGACTTAAGGTGAAATTTGTTCATAGTACCATGGCACTATTGACATATTATTCCTTTCTTAGCTCATTAAATTGATTCCAACATGCATATAGCTGGAATCAAGAACCTAAAGTTAAAGCCTTTCATCATTCGTCTACTTTTTTCCGGCTGAAATTACTAGTTAGAAGTGACTCTATCATTAGAGTTAATGAGTTATCCAGAGCTCTCTGATGGAGAGGTGGAGGAGGAAAGATAATTTCTTTATAAGTTAGAGGATGTATGAAAGCAACTTTAGCAAGCTCTCAATGGAAGCTTCTTCTTCATGAATTTAGAATTCTTAACTGCCAAAGCTGAATTAGAATTCTTGTAGGAAGAAAGGCAAAATTTTCTTCTAATCCAAGCAAAAAACACTATTAACCACAACAAGAAAACCACAAGGATGATTATCATCGTTGCAGCTTTTGGTTCTATTATGATTTTTTCATAGTTTACTTACTGGTGGTTTATGTGTGCATGCACATTCGAAGTAACTCATTGCTGTGCTTGTTGACAGATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAAGTACGTATTAGGATGTATTTGAAACGTGACAAAGTGAAGCTCGGATGCGCTTGTTAATAGATCATTGAATTGAACAGAATTGGCTTTATGTATTTGGAATCCTTGTATTTACTGTATTTTTCTTTTTCTCCAATGCAGGGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAGGTGATATATCCCTTATCATAACCAAGATGTTCCACATATACTAAAAAATCTGAAATGGTGGTGGGCACTTGCAGTCAATAGTAAAGGTTATGGTAAACTTTAGTGCTCCCTGTTGTTGCTGCTGTAGTAGTGCTGCTTCATATTCTTGACCGAGTTAAAATTCTGTGAACCACTAAGTACGACTGAAGACTCAAAACTCATTCCTTTTTCTCCTGGGACACCCCTGATGAATATATGTTGATTTTTTATCACAAGGATGAGGAACATTTCATATCTATTAATTCATGACTCTACTACTGAAATTCAACATATATCTATCTTTCTTCCTCTGTTATTGCATTGTCTTCTGATTGGAGGAATAGTTGTTATGTACTTCGGTTGGAAATCACTCTTCATTTCCTCATCTTTGTGTTTTATGACTATGATGCAGGAATAATTTCTAACATCTACCCAATCTCATCCTTTTTTTTTTTTGAAAACATGTTATGCACATATGTCGACTGAATGGAGTCATACAACTATTACCCACTATCGTTAGGATGAAGAAAGTCTGAATCTTTTTGCCATTTCATCCCGGGGGAGGGGGTAGGACAACTGCTAGCATTAGGAAAATCCATGGTCGTTATAATCCTTGCGCACTTTCTGTCAATGTGTGGTTGTTAAGTATCTCCTGACTTGGACATGTGACAAGATTTCTCTCATCTTCCTTCAACCTTGGCTAGTTTTTTTTCCCTTCTATTTTTAAATGGTTGTATTTTACTGGCTCATTGTAGTTTGAATCTACTTCTGTATATCTATGGAATAGCCTCTCATTTTTAGTTGAACTCATGAGGTTCTTATTTCCATAGAAGATACGTCTTTTGTAGAACACTATACTTTTTGTATGTTCTCTTACTATTTGTTATGTCACTTGTACATGGGATATAATCCCACATCTTTTACATGGTCAAAAAAAATATCTATATTTTAGAAGAATGACTCATTTTACTCTTGAGCGATTGTTAATTGTTCCATTTTTTGGTTTTGTTCTCTGATTCTCTGAAATTGCAGGTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATTGTAAGGTTTCTGTTTCTGATACTTATCACTGTTTCGATTTCGATCTGATAGATAATTATTTATTACCCTTCTTTTTCTCTTTGGGTTGATATAGCAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCGAGCAAAGTACGTGCTTACTAATTCTCTAACAATTAGTACCTTTATGCAGTCTTCTTTCACTCAATCTAGTATTTGATGCTTATTCAAGACATTTCCTGTGTTTTGATAAGATATGAAGAGAAGAGGTGGGTCCCTAAGGATGGGATTCAAAAATCACCTTCCAGGGTTCAAGAAGAGAGGGCTTCGGTGCAATGGCAACAAAACAATGATAGAAGTGGGCGTATACATGCAGCTAGCTCAGGATGTGCATCTGACGAGAGGAAAAATATTCAAGCCTCGAAAGTGAAGCAAGATGTACCTGCTGCTAGAGTCAGTATACCAGTGCCTCCTAGAGGACCAGAGCATGTATGTTAAACTTATTCGTCAAACTGTTTTTGTCCATGCTACTTTCCCTTCCAGGTGTAGTATTATTGTTTCAATGTTCTATTTTGAATGAAATCTTATTCTTTTGCTGGTTATCTACCCGACTTGCCTATGTATGTGAGCTGATTGGGCCGTTAGCTCTTGAGTTATTGGTTCACTGTAAGGGTCGTTTGGTAGAGTGTATTAATATAATGCAAAATAGAGTATACTAGTAATGCTTGCATTAGCAATTCAGTATTAGTTATGCTTGCATTAATTATACATAGATTATTTTTATGCATTGTTTGGTTTGATGCATTAAAATAGAATGCATTACATTAAAAGAAATATTTACAAAGATACCCTTCACTATTATGGTAGAAAAGATATAACAAAGGTATTGAGGGGCAATTGGGTGTTTAATTGAGTTAATGCATGCATTAAAAGCATTGCATTGTTAGAAATATATGCTATTAGCAATACACATCTTAATGCACAATAGAGTGTGTAACTAATGCAAGCATTAGTTATACATAGGTTGGAAAAGAGTACCAAACAAGTTACTAGCAACACACAAGGCTAATGCATGTATTATTTTTTTAATACACTCTACCAAGTGTTCCCTAAGTGTATTTGTGTTGAATATTGATTCTTTACTCAGATTAATGAATTAAGCAGCTCTTGTTCATACTGTTTAGCTATTACATACTTGGAATCTTAGTTTTTATGTACGTGGTGTATTCATGGCCCCTGTTGGTCCTTCTGTAGTTCTGTATAACTGCTGCTAGCTGCTGTTTCTTCTGAGTTAGTTTGGATACTTTCTGGATTAGAATAGACTCTTATAGGTTTGACACCTTGCAGGTAACTTCAGGTCAGGTTGCTAACCAGACAAGTCAGAAAGCAGAGCCAGTTGCAGTCACTGAACCAGC</genome_strand>
        <mrna_strand>TTCTCATCCAGTTGCATTTTTCTTTTGATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTCATTTTCCGATATCTTCTCTCTCCGTCGGTCAATTCGCTTAAACCCTTGCTATCGTCACCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGAAGGACTTCTTAAATTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAA..........................................................................................................................................GGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATTTGCATGCAATGCTCTGGGATCCACAGAAGCCTAGGGGTGCACATATCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATT..............................................................................................CAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCGAGCAAA........................................................................................................ATATGAAGAGAAGAGGTGGGTCCCTAAGGATGGGATTCAAAAATCACCTTCCAGGGTTCAAGAAGAGAGGGCTTCGGTGCAATGGCAACAAAGCAATGATAGAAGTGGGCGTGTACATGCAACTAGCTCAGGAGGTGCATCTGACGAGAGGAAATATACTCAAGCCTCGAAAATGAAGCAAGATGTACCCGCTGCTAGAGTCAGTATACCAGTGCCTCCTAAAGGGACAGAGCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTTCAGGTCANGGTGCTAACCAGACAAGTCAGAAAGCATAGCCAGTTGCAGTCACTGAATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-VGIFs5/sgn_marker_seqs" ref_id="SGN-M4691-2" ref_strand="+" ref_description="SGN-M4691-2 C2_At5g54310-2 [cosii_markers]">
      <seq>ccagttgcatttttcttttgatagatatttacgcgtcggagaggggaggaatcagatcggcgatttttattttccgatagcttctctctccgtcggttaattcgcttaaacccttgctatcgtcatcatgaatgagaaggctaatgttactaaagagcttaatgcgaagcatagaaagatactagaaggacttcttaagttgcccgagaacagggaatgtgcagattgcaaagccaagggtcctagatgggcaagcgtgaacctgggaatatttatatgcatgcaatgctctgggatccacagaagcctgggggtgcacatatcaaaggtcagatcagctacactagacacatggcttcctgaacaagttgcatttatccattcaatgggaaatgagaggtcaaatagtttttgggaagcagagctgcctccaaattatgatagagttggtattgagaatttcatccgagcaaaatatgaagagaagaggtgggtccctaaggatgggattcaaaaatcaccttccagggttcaagaagagagggcttcggtgcaatggcaacaaaacaatgatagaagtgggcgtatacatgcagctagctcaagatgtgcatctgacgagaggaaaaatattcaagcctcgaaagtgaagcaagatgtacctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-iS6h5/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="109486" stop="105102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109186" g_stop="109009" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109008" i_stop="107277" i_length="1732">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107276" g_stop="107218" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="237" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107217" i_stop="107080" i_length="138">
            <donor d_prob="0.217" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107079" g_stop="106989" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="328" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106988" i_stop="105939" i_length="1050">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105938" g_stop="105884" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="383" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105883" i_stop="105790" i_length="94">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105789" g_stop="105699" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="474" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105698" i_stop="105595" i_length="104">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105594" g_stop="105402" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="667" r_length="193" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-M4691-2" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M4691-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109186" e_stop="109009"/>
          <exon e_start="107276" e_stop="107218"/>
          <exon e_start="107079" e_stop="106989"/>
          <exon e_start="105938" e_stop="105884"/>
          <exon e_start="105789" e_stop="105699"/>
          <exon e_start="105594" e_stop="105402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTTGCATTTTTCTTTTGATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAGGTATTTTTTGTTCCGATTCATGATTTCTCTTTTGAATTTCAGTTTATTGTGGTTGATCTAGTTAGATTTGATGATGTTTGGCTAGTGTTTGAGTTTGGTTGATACATCTTTACATGGTTTTATCAGTTAATAGTTGAGATTTGGGGCTTATTGGATCCTTTTAACGCTTGTGTTCTTATGGAACTCCTATTGTAGTTTTATTCTGATAATTCGAGCAGTGAAATACTGATCTAGTTCAACTAGGTGCTTGGAATTATGATTTTGGATGTACATTTTTTCGTAATAGAAGAAGAAAAACAAATATTTACACATTACGCACACAATTGGATTAAAAAAAGGATCTTTAAACTCATGTGCTACCCGAATAAGAGATTTTGAAGAACTGTGATAGGTCTTGAGACAGACAGTCTTGTTAAATTACTGAAAGCAAGCACCTTGCTTTGTACCTCAACTTTCCGTTATTATTAACAAAGATAATATATTTTATCTTAAAGCAAGCACCTTGGTTTAAGTTTGGTTGATGCATCTTATACGCTTTTATCAGTTAATATTTGAGATTTGGGGCTTATCAGGTCCTTTTGCTCCGTTTCCTAAAATTGAACTTCTATTGCTAGTTTTATTCGTGATAATTTGAGCACTGAAATGATAATCTGGTTTAAGCAGGTGCTTGAAATTATAATTTTGGATGTTCATTTTTACCTAAATGAAAAAGAAAAACAGACACTTACTCACACTACTGGATAAAAGAAAAAAATGAGACGGACACATGTAGATTTAGTTAGTGCAATTCCAAACATAGTCAGTTGTTAAATTACTTAAAGCAAGCACCTTGCTGTGTACCTTAACTCTCCACTACTATTAGTAATCTGTCTTTATCTTGATAATTTGAATCACTTCTTTGCACATGACACCAAGACAGTGTCAATATTACATAAGGGTTAGCACTGGCTGTCCAAATCTATCTGTACAAAGAGGAATCTCTTCTTTGTAAAGAGATCTCCTTTGGCTTTCCATCTCTGTCTTTCACTCCTTTAAAAGTTCTACTGTGCCTTCCTCGCCGGATAGTCAGGGAGTGTGTGTAGGTTCTGTCTTCCAAATCACCTTCTTATTAGTCTCAAATATTCCTTTAGTTGTATATGATACATCCAAGAGACGGGTTTTAAGGATATACATCATTTCTTATTGTTACTAATTATTTAAGGACTTAAGGTGAAATTTGTTCATAGTACCATGGCACTATTGACATATTATTCCTTTCTTAGCTCATTAAATTGATTCCAACATGCATATAGCTGGAATCAAGAACCTAAAGTTAAAGCCTTTCATCATTCGTCTACTTTTTTCCGGCTGAAATTACTAGTTAGAAGTGACTCTATCATTAGAGTTAATGAGTTATCCAGAGCTCTCTGATGGAGAGGTGGAGGAGGAAAGATAATTTCTTTATAAGTTAGAGGATGTATGAAAGCAACTTTAGCAAGCTCTCAATGGAAGCTTCTTCTTCATGAATTTAGAATTCTTAACTGCCAAAGCTGAATTAGAATTCTTGTAGGAAGAAAGGCAAAATTTTCTTCTAATCCAAGCAAAAAACACTATTAACCACAACAAGAAAACCACAAGGATGATTATCATCGTTGCAGCTTTTGGTTCTATTATGATTTTTTCATAGTTTACTTACTGGTGGTTTATGTGTGCATGCACATTCGAAGTAACTCATTGCTGTGCTTGTTGACAGATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAAGTACGTATTAGGATGTATTTGAAACGTGACAAAGTGAAGCTCGGATGCGCTTGTTAATAGATCATTGAATTGAACAGAATTGGCTTTATGTATTTGGAATCCTTGTATTTACTGTATTTTTCTTTTTCTCCAATGCAGGGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAGGTGATATATCCCTTATCATAACCAAGATGTTCCACATATACTAAAAAATCTGAAATGGTGGTGGGCACTTGCAGTCAATAGTAAAGGTTATGGTAAACTTTAGTGCTCCCTGTTGTTGCTGCTGTAGTAGTGCTGCTTCATATTCTTGACCGAGTTAAAATTCTGTGAACCACTAAGTACGACTGAAGACTCAAAACTCATTCCTTTTTCTCCTGGGACACCCCTGATGAATATATGTTGATTTTTTATCACAAGGATGAGGAACATTTCATATCTATTAATTCATGACTCTACTACTGAAATTCAACATATATCTATCTTTCTTCCTCTGTTATTGCATTGTCTTCTGATTGGAGGAATAGTTGTTATGTACTTCGGTTGGAAATCACTCTTCATTTCCTCATCTTTGTGTTTTATGACTATGATGCAGGAATAATTTCTAACATCTACCCAATCTCATCCTTTTTTTTTTTTGAAAACATGTTATGCACATATGTCGACTGAATGGAGTCATACAACTATTACCCACTATCGTTAGGATGAAGAAAGTCTGAATCTTTTTGCCATTTCATCCCGGGGGAGGGGGTAGGACAACTGCTAGCATTAGGAAAATCCATGGTCGTTATAATCCTTGCGCACTTTCTGTCAATGTGTGGTTGTTAAGTATCTCCTGACTTGGACATGTGACAAGATTTCTCTCATCTTCCTTCAACCTTGGCTAGTTTTTTTTCCCTTCTATTTTTAAATGGTTGTATTTTACTGGCTCATTGTAGTTTGAATCTACTTCTGTATATCTATGGAATAGCCTCTCATTTTTAGTTGAACTCATGAGGTTCTTATTTCCATAGAAGATACGTCTTTTGTAGAACACTATACTTTTTGTATGTTCTCTTACTATTTGTTATGTCACTTGTACATGGGATATAATCCCACATCTTTTACATGGTCAAAAAAAATATCTATATTTTAGAAGAATGACTCATTTTACTCTTGAGCGATTGTTAATTGTTCCATTTTTTGGTTTTGTTCTCTGATTCTCTGAAATTGCAGGTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATTGTAAGGTTTCTGTTTCTGATACTTATCACTGTTTCGATTTCGATCTGATAGATAATTATTTATTACCCTTCTTTTTCTCTTTGGGTTGATATAGCAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCGAGCAAAGTACGTGCTTACTAATTCTCTAACAATTAGTACCTTTATGCAGTCTTCTTTCACTCAATCTAGTATTTGATGCTTATTCAAGACATTTCCTGTGTTTTGATAAGATATGAAGAGAAGAGGTGGGTCCCTAAGGATGGGATTCAAAAATCACCTTCCAGGGTTCAAGAAGAGAGGGCTTCGGTGCAATGGCAACAAAACAATGATAGAAGTGGGCGTATACATGCAGCTAGCTCAGGATGTGCATCTGACGAGAGGAAAAATATTCAAGCCTCGAAAGTGAAGCAAGATGTACCTGCT</genome_strand>
        <mrna_strand>CCAGTTGCATTTTTCTTTTGATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAA..........................................................................................................................................GGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATT..............................................................................................CAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCGAGCAAA........................................................................................................ATATGAAGAGAAGAGGTGGGTCCCTAAGGATGGGATTCAAAAATCACCTTCCAGGGTTCAAGAAGAGAGGGCTTCGGTGCAATGGCAACAAAACAATGATAGAAGTGGGCGTATACATGCAGCTAGCTCAAGATGTGCATCTGACGAGAGGAAAAATATTCAAGCCTCGAAAGTGAAGCAAGATGTACCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-VGIFs5/sgn_marker_seqs" ref_id="SGN-M1956" ref_strand="+" ref_description="SGN-M1956 T1366 [cos_markers]">
      <seq>tttctcatccatttgcatttttcttttgatagatatttacgcgtcggagaggggaggaatcagatcggcgatttttattttccgatagcttctctctccgtcggttaattcgcttaaacccttgctatcgtcatcatgaatgagaaggctaatgttactaaagagcttaatgcgaagcatagaaagatactagaaggacttcttaagttgcccgagaacagggaatgtgcagattgcaaagccaagggtcctagatgggcaagcgtgaacctgggaatatttatatgcatgcaatgctctgggatccacagaagcctgggggtgcacatatcaaaggtcagatcagctacactagacacatggcttcctgaacaagttgcatttatccattcaatgggaaatgagaggtcaaatagttattgggaagcagagctgcctccaaattatgatagagttggtattgagaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-iS6h5/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="109494" stop="105410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109194" g_stop="109009" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109008" i_stop="107277" i_length="1732">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107276" g_stop="107218" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="245" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107217" i_stop="107080" i_length="138">
            <donor d_prob="0.217" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107079" g_stop="106989" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="336" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106988" i_stop="105939" i_length="1050">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105938" g_stop="105884" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="391" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105883" i_stop="105790" i_length="94">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105789" g_stop="105710" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="471" r_length="80" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-M1956" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109194" e_stop="109009"/>
          <exon e_start="107276" e_stop="107218"/>
          <exon e_start="107079" e_stop="106989"/>
          <exon e_start="105938" e_stop="105884"/>
          <exon e_start="105789" e_stop="105710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCATCCAGTTGCATTTTTCTTTTGATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAGGTATTTTTTGTTCCGATTCATGATTTCTCTTTTGAATTTCAGTTTATTGTGGTTGATCTAGTTAGATTTGATGATGTTTGGCTAGTGTTTGAGTTTGGTTGATACATCTTTACATGGTTTTATCAGTTAATAGTTGAGATTTGGGGCTTATTGGATCCTTTTAACGCTTGTGTTCTTATGGAACTCCTATTGTAGTTTTATTCTGATAATTCGAGCAGTGAAATACTGATCTAGTTCAACTAGGTGCTTGGAATTATGATTTTGGATGTACATTTTTTCGTAATAGAAGAAGAAAAACAAATATTTACACATTACGCACACAATTGGATTAAAAAAAGGATCTTTAAACTCATGTGCTACCCGAATAAGAGATTTTGAAGAACTGTGATAGGTCTTGAGACAGACAGTCTTGTTAAATTACTGAAAGCAAGCACCTTGCTTTGTACCTCAACTTTCCGTTATTATTAACAAAGATAATATATTTTATCTTAAAGCAAGCACCTTGGTTTAAGTTTGGTTGATGCATCTTATACGCTTTTATCAGTTAATATTTGAGATTTGGGGCTTATCAGGTCCTTTTGCTCCGTTTCCTAAAATTGAACTTCTATTGCTAGTTTTATTCGTGATAATTTGAGCACTGAAATGATAATCTGGTTTAAGCAGGTGCTTGAAATTATAATTTTGGATGTTCATTTTTACCTAAATGAAAAAGAAAAACAGACACTTACTCACACTACTGGATAAAAGAAAAAAATGAGACGGACACATGTAGATTTAGTTAGTGCAATTCCAAACATAGTCAGTTGTTAAATTACTTAAAGCAAGCACCTTGCTGTGTACCTTAACTCTCCACTACTATTAGTAATCTGTCTTTATCTTGATAATTTGAATCACTTCTTTGCACATGACACCAAGACAGTGTCAATATTACATAAGGGTTAGCACTGGCTGTCCAAATCTATCTGTACAAAGAGGAATCTCTTCTTTGTAAAGAGATCTCCTTTGGCTTTCCATCTCTGTCTTTCACTCCTTTAAAAGTTCTACTGTGCCTTCCTCGCCGGATAGTCAGGGAGTGTGTGTAGGTTCTGTCTTCCAAATCACCTTCTTATTAGTCTCAAATATTCCTTTAGTTGTATATGATACATCCAAGAGACGGGTTTTAAGGATATACATCATTTCTTATTGTTACTAATTATTTAAGGACTTAAGGTGAAATTTGTTCATAGTACCATGGCACTATTGACATATTATTCCTTTCTTAGCTCATTAAATTGATTCCAACATGCATATAGCTGGAATCAAGAACCTAAAGTTAAAGCCTTTCATCATTCGTCTACTTTTTTCCGGCTGAAATTACTAGTTAGAAGTGACTCTATCATTAGAGTTAATGAGTTATCCAGAGCTCTCTGATGGAGAGGTGGAGGAGGAAAGATAATTTCTTTATAAGTTAGAGGATGTATGAAAGCAACTTTAGCAAGCTCTCAATGGAAGCTTCTTCTTCATGAATTTAGAATTCTTAACTGCCAAAGCTGAATTAGAATTCTTGTAGGAAGAAAGGCAAAATTTTCTTCTAATCCAAGCAAAAAACACTATTAACCACAACAAGAAAACCACAAGGATGATTATCATCGTTGCAGCTTTTGGTTCTATTATGATTTTTTCATAGTTTACTTACTGGTGGTTTATGTGTGCATGCACATTCGAAGTAACTCATTGCTGTGCTTGTTGACAGATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAAGTACGTATTAGGATGTATTTGAAACGTGACAAAGTGAAGCTCGGATGCGCTTGTTAATAGATCATTGAATTGAACAGAATTGGCTTTATGTATTTGGAATCCTTGTATTTACTGTATTTTTCTTTTTCTCCAATGCAGGGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAGGTGATATATCCCTTATCATAACCAAGATGTTCCACATATACTAAAAAATCTGAAATGGTGGTGGGCACTTGCAGTCAATAGTAAAGGTTATGGTAAACTTTAGTGCTCCCTGTTGTTGCTGCTGTAGTAGTGCTGCTTCATATTCTTGACCGAGTTAAAATTCTGTGAACCACTAAGTACGACTGAAGACTCAAAACTCATTCCTTTTTCTCCTGGGACACCCCTGATGAATATATGTTGATTTTTTATCACAAGGATGAGGAACATTTCATATCTATTAATTCATGACTCTACTACTGAAATTCAACATATATCTATCTTTCTTCCTCTGTTATTGCATTGTCTTCTGATTGGAGGAATAGTTGTTATGTACTTCGGTTGGAAATCACTCTTCATTTCCTCATCTTTGTGTTTTATGACTATGATGCAGGAATAATTTCTAACATCTACCCAATCTCATCCTTTTTTTTTTTTGAAAACATGTTATGCACATATGTCGACTGAATGGAGTCATACAACTATTACCCACTATCGTTAGGATGAAGAAAGTCTGAATCTTTTTGCCATTTCATCCCGGGGGAGGGGGTAGGACAACTGCTAGCATTAGGAAAATCCATGGTCGTTATAATCCTTGCGCACTTTCTGTCAATGTGTGGTTGTTAAGTATCTCCTGACTTGGACATGTGACAAGATTTCTCTCATCTTCCTTCAACCTTGGCTAGTTTTTTTTCCCTTCTATTTTTAAATGGTTGTATTTTACTGGCTCATTGTAGTTTGAATCTACTTCTGTATATCTATGGAATAGCCTCTCATTTTTAGTTGAACTCATGAGGTTCTTATTTCCATAGAAGATACGTCTTTTGTAGAACACTATACTTTTTGTATGTTCTCTTACTATTTGTTATGTCACTTGTACATGGGATATAATCCCACATCTTTTACATGGTCAAAAAAAATATCTATATTTTAGAAGAATGACTCATTTTACTCTTGAGCGATTGTTAATTGTTCCATTTTTTGGTTTTGTTCTCTGATTCTCTGAAATTGCAGGTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATTGTAAGGTTTCTGTTTCTGATACTTATCACTGTTTCGATTTCGATCTGATAGATAATTATTTATTACCCTTCTTTTTCTCTTTGGGTTGATATAGCAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTC</genome_strand>
        <mrna_strand>TTTCTCATCCATTTGCATTTTTCTTTTGATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAA..........................................................................................................................................GGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATT..............................................................................................CAATGGGAAATGAGAGGTCAAATAGTTATTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-VGIFs5/sgn_marker_seqs" ref_id="SGN-M1871" ref_strand="+" ref_description="SGN-M1871 T1257 [cos_markers]">
      <seq>ctcgtgccgaattcggcacgaggagactctgtttgattttggttttcttgttggctaacaacaaatatggaattggatctggatcgtgggcaagtcacactgatagtatccagtatatgtcttatgctgactttacatttcagcatacagctagtgacagaacattttacgtcatggaagaagcctaaagagcaaaaggccataattattatcgtcctcatggcacctttgtacgctattgtctccttcattgggttggtcgatttcatgggaagcaaaccctttttcactttcttggaatctgtcaaagaatgttatgaagcaattgtgatggctaagttcctggggttgatgtacacttacttgaatatatccataagcaaaaacatagtccctgatgaaattaagggaagacagattcaccactcattcccaatgacactcttccagcctcacactgctcatttgaaccatcatacattgaagcttctcaagaactggacatggcagtttgttgtgattcgccctgtatgctctattttaatgattgttttacaaatgtttggagtgtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-iS6h5/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="121141" stop="119486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120841" g_stop="120545" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="327" r_length="297" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120544" i_stop="120443" i_length="102">
            <donor d_prob="0.530" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120442" g_stop="120320" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="450" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120319" i_stop="119910" i_length="410">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119909" g_stop="119786" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="574" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-M1871" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120841" e_stop="120545"/>
          <exon e_start="120442" e_stop="120320"/>
          <exon e_start="119909" e_stop="119786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATTGTAAGTATAGCCAAGTTAACATTTTCTGCGTGTATCAAGCATCACTTGTTGAGTTGTGTTCTTGTCAGAATTCTTTGCTCACTTGTGTTCTATGTGATACAGGTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAGGTACAACGTGTAATCTAAAGTTATGTGTACATATCACTCTTATATATCATCAACATTGCATGCTTATGAGAAAATTACGATGATGCCAACAAGGATGAAAACTAAATTACATTGTGTTCAGCATGCCTTATAGAGTATATATACTGTTAAGCACAGAGTTGCACTATTTCAATCCTTTTGCACCGATGTATAGGCACACTCCTGCATTGAGTTGCTTACTAAGTTTACATGGACAAATTATCATTACTGTGTAGTATGTTTACAAACTCAGATGTTAGGCTTATAAGTATTCAGTGCTCTCTTTCTTTTCTCTTTGAGACCAAAAAGCATGATGCCTCATAGAAGCTTACATATACAGTTTTAGTGTTGTCATGGTACTCGGTCACAAGCTAACTGTTGTGTCACTGCAGCCTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACC</genome_strand>
        <mrna_strand>GTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGTATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTACGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATT......................................................................................................GTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................CCTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>8</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="42974" PGL_stop="47258"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42974" e_stop="43163"/>
            <exon e_start="43300" e_stop="43357"/>
            <exon e_start="43426" e_stop="43548"/>
            <exon e_start="43833" e_stop="43921"/>
            <exon e_start="44009" e_stop="44098"/>
            <exon e_start="45198" e_stop="45368"/>
            <exon e_start="45459" e_stop="45577"/>
            <exon e_start="45686" e_stop="45812"/>
            <exon e_start="46864" e_stop="47258"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="0.968"/>
          <exon-intron don_prob="0.964" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.738" e_score="0.967"/>
          <exon-intron don_prob="0.995" acc_prob="0.946" e_score="0.989"/>
          <exon-intron don_prob="0.962" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.480" acc_prob="0.850" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="42974" e_stop="43163" e_length="190"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43164" i_stop="43299" i_length="136"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43300" e_stop="43357" e_length="58"/>
          </exon>
          <intron i_serial="2" don_prob="0.964" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43358" i_stop="43425" i_length="68"/>
          </intron>
          <exon e_serial="3" e_score="0.967">
            <gDNA_exon_boundary e_start="43426" e_stop="43548" e_length="123"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.738">
            <gDNA_intron_boundary i_start="43549" i_stop="43832" i_length="284"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="43833" e_stop="43921" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.946">
            <gDNA_intron_boundary i_start="43922" i_stop="44008" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44009" e_stop="44098" e_length="90"/>
          </exon>
          <intron i_serial="5" don_prob="0.962" acc_prob="1.000">
            <gDNA_intron_boundary i_start="44099" i_stop="45197" i_length="1099"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="45198" e_stop="45368" e_length="171"/>
          </exon>
          <intron i_serial="6" don_prob="0.480" acc_prob="0.850">
            <gDNA_intron_boundary i_start="45369" i_stop="45458" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="45459" e_stop="45577" e_length="119"/>
          </exon>
          <intron i_serial="7" don_prob="0.986" acc_prob="0.961">
            <gDNA_intron_boundary i_start="45578" i_stop="45685" i_length="108"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="45686" e_stop="45812" e_length="127"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.978">
            <gDNA_intron_boundary i_start="45813" i_stop="46863" i_length="1051"/>
          </intron>
          <exon e_serial="9" e_score="0.965">
            <gDNA_exon_boundary e_start="46864" e_stop="47258" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42974" stop="43163"/>
              <exon start="43300" stop="43357"/>
              <exon start="43426" stop="43548"/>
              <exon start="43833" stop="43921"/>
              <exon start="44009" stop="44098"/>
              <exon start="45198" stop="45368"/>
              <exon start="45459" stop="45577"/>
              <exon start="45686" stop="45812"/>
              <exon start="46864" stop="47258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7816-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44046" stop="44098"/>
              <exon start="45198" stop="45368"/>
              <exon start="45459" stop="45577"/>
              <exon start="45686" stop="45812"/>
              <exon start="46864" stop="47025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7816" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGTTCTTCCTGCATTTTATTGATCAAGTTGAACGGATAAACTCTGGGACACCTAATTTTGATCCATCAAGGAGCTTCAAGTTTGGTATTGAAGAACGCCTCCAATGTTCCTCGGGCAAAGTCACTTACAACAGAAGGAATGATTATATTCTGTCTCTTAATATTCCTTTGGAGAGGGCTATAAATAAAA : AAGAGCTAGCAGAATTTCAAAATTTGAAGGCTGAGAGAGCTGCAGGAGGAAAAGAACT : GTCTGCTGATGAAATTGTTCGCCCTAGAGTATCATTGAAGGATTGCCTAGATTGCTTTTCAGCTCCTGAGGAGGTGCATGATTTCTACAGCACAGCTTTAACAGCTAGGACTACAGCAATCAA : AACTGCAGGTTTGACTTCTTTTCCAGATTATCTGGTTTTGCACATGCGGAAATTTGTTATGGAGGAAGGTTGGGTGCCAAAGAAGCTCG : ATGTCTACATAGATGTCCCTGAAACCATTGACATAAGTAGCATGCGAAGTAATGGTATTCAACCAGGAGAAGAGCTGTTGCCTGACAGTG : CTGCAGGGGATGGTGAGCAGTCAATAAAGCTTCTGGCTGACGATGATATTGTTGCACAACTTGTTTCAATGGGATTTAATCTACTTCATTGTCAGAAGGCTGCTATCAATACTTCCAACAGTGGAGTAGAGGCAGCAATGGATTGGTTACTTAATCATATGAATGATCCAG : ATATTGATGCTCCTATATCAGAAAACGTGCAAAATCCTGATATTGATCAATCTAAAGTTGATACGCTGGTTTCATTTGGTTTCGAAGAGAAACTTGCCCATAAGGCCCTGAAGGCATCG : GGAGGTGATGTTGAAAAAGCTACTGAATGGATATTCAGCAGCCCTAGTGCCAGTACTGCAGCAGACATGGATGTTACTACCAGTAGTGGAGCTGCAGTTGATACCTTGATGCCTGATGGAGGAGGAA : AATACAGGCTCCTGGGATTCGTGAGCCACATAGGCACATCTACCCACTGTGGCCATTATGTCGCTCATATTAACAAAGATGGCCGGTGGGTGATTTTCAACGATGAAAAAGTTGGGGTCTCAAAAAACCCCCCTATGGATATGGGATACCTCTACTTTTTTGAAAGACTTGAGAGTTGAACAATGGACATCTCGGAGCAGGATTAAATGTTGGGATATGCATTCAGGACCAAGCAACTTCTGGAGTCAGCTTGCTATTGTCATTTGTTTAGCAGGTTGAATACATACGACAAATGTCTCTCGTAACATGCATTGATCTTAGACGAATTCAAATCTCAAGTAGAAGAGTATAAACTTCTTTAGGACGTGAATTTCGAAAGTTTTTTCTTCCATACA</gDNA_template>
            <first_frame> E  F  F  L  H  F  I  D  Q  V  E  R  I  N  S  G  T  P  N  F  D  P  S  R  S  F  K  F  G  I  E  E  R  L  Q  C  S  S  G  K  V  T  Y  N  R  R  N  D  Y  I  L  S  L  N  I  P  L  E  R  A  I  N  K   : K  E  L  A  E  F  Q  N  L  K  A  E  R  A  A  G  G  K  E  L :   S  A  D  E  I  V  R  P  R  V  S  L  K  D  C  L  D  C  F  S  A  P  E  E  V  H  D  F  Y  S  T  A  L  T  A  R  T  T  A  I  K :   T  A  G  L  T  S  F  P  D  Y  L  V  L  H  M  R  K  F  V  M  E  E  G  W  V  P  K  K  L   : D  V  Y  I  D  V  P  E  T  I  D  I  S  S  M  R  S  N  G  I  Q  P  G  E  E  L  L  P  D  S   : A  A  G  D  G  E  Q  S  I  K  L  L  A  D  D  D  I  V  A  Q  L  V  S  M  G  F  N  L  L  H  C  Q  K  A  A  I  N  T  S  N  S  G  V  E  A  A  M  D  W  L  L  N  H  M  N  D  P   : D  I  D  A  P  I  S  E  N  V  Q  N  P  D  I  D  Q  S  K  V  D  T  L  V  S  F  G  F  E  E  K  L  A  H  K  A  L  K  A  S  :  G  G  D  V  E  K  A  T  E  W  I  F  S  S  P  S  A  S  T  A  A  D  M  D  V  T  T  S  S  G  A  A  V  D  T  L  M  P  D  G  G  G   : K  Y  R  L  L  G  F  V  S  H  I  G  T  S  T  H  C  G  H  Y  V  A  H  I  N  K  D  G  R  W  V  I  F  N  D  E  K  V  G  V  S  K  N  P  P  M  D  M  G  Y  L  Y  F  F  E  R  L  E  S  *  T  M  D  I  S  E  Q  D  *  M  L  G  Y  A  F  R  T  K  Q  L  L  E  S  A  C  Y  C  H  L  F  S  R  L  N  T  Y  D  K  C  L  S  *  H  A  L  I  L  D  E  F  K  S  Q  V  E  E  Y  K  L  L  *  D  V  N  F  E  S  F  F  F  H  T </first_frame>
            <second_frame>  S  S  S  C  I  L  L  I  K  L  N  G  *  T  L  G  H  L  I  L  I  H  Q  G  A  S  S  L  V  L  K  N  A  S  N  V  P  R  A  K  S  L  T  T  E  G  M  I  I  F  C  L  L  I  F  L  W  R  G  L  *  I  K  :  K  S  *  Q  N  F  K  I  *  R  L  R  E  L  Q  E  E  K  N   : C  L  L  M  K  L  F  A  L  E  Y  H  *  R  I  A  *  I  A  F  Q  L  L  R  R  C  M  I  S  T  A  Q  L  *  Q  L  G  L  Q  Q  S   : K  L  Q  V  *  L  L  F  Q  I  I  W  F  C  T  C  G  N  L  L  W  R  K  V  G  C  Q  R  S  S  :  M  S  T  *  M  S  L  K  P  L  T  *  V  A  C  E  V  M  V  F  N  Q  E  K  S  C  C  L  T  V  :  L  Q  G  M  V  S  S  Q  *  S  F  W  L  T  M  I  L  L  H  N  L  F  Q  W  D  L  I  Y  F  I  V  R  R  L  L  S  I  L  P  T  V  E  *  R  Q  Q  W  I  G  Y  L  I  I  *  M  I  Q  :  I  L  M  L  L  Y  Q  K  T  C  K  I  L  I  L  I  N  L  K  L  I  R  W  F  H  L  V  S  K  R  N  L  P  I  R  P  *  R  H  R :   E  V  M  L  K  K  L  L  N  G  Y  S  A  A  L  V  P  V  L  Q  Q  T  W  M  L  L  P  V  V  E  L  Q  L  I  P  *  C  L  M  E  E  E  :  N  T  G  S  W  D  S  *  A  T  *  A  H  L  P  T  V  A  I  M  S  L  I  L  T  K  M  A  G  G  *  F  S  T  M  K  K  L  G  S  Q  K  T  P  L  W  I  W  D  T  S  T  F  L  K  D  L  R  V  E  Q  W  T  S  R  S  R  I  K  C  W  D  M  H  S  G  P  S  N  F  W  S  Q  L  A  I  V  I  C  L  A  G  *  I  H  T  T  N  V  S  R  N  M  H  *  S  *  T  N  S  N  L  K  *  K  S  I  N  F  F  R  T  *  I  S  K  V  F  S  S  I   </second_frame>
            <third_frame>   V  L  P  A  F  Y  *  S  S  *  T  D  K  L  W  D  T  *  F  *  S  I  K  E  L  Q  V  W  Y  *  R  T  P  P  M  F  L  G  Q  S  H  L  Q  Q  K  E  *  L  Y  S  V  S  *  Y  S  F  G  E  G  Y  K  *  K :   R  A  S  R  I  S  K  F  E  G  *  E  S  C  R  R  K  R  T  :  V  C  *  *  N  C  S  P  *  S  I  I  E  G  L  P  R  L  L  F  S  S  *  G  G  A  *  F  L  Q  H  S  F  N  S  *  D  Y  S  N  Q  :  N  C  R  F  D  F  F  S  R  L  S  G  F  A  H  A  E  I  C  Y  G  G  R  L  G  A  K  E  A  R :   C  L  H  R  C  P  *  N  H  *  H  K  *  H  A  K  *  W  Y  S  T  R  R  R  A  V  A  *  Q  C :   C  R  G  W  *  A  V  N  K  A  S  G  *  R  *  Y  C  C  T  T  C  F  N  G  I  *  S  T  S  L  S  E  G  C  Y  Q  Y  F  Q  Q  W  S  R  G  S  N  G  L  V  T  *  S  Y  E  *  S  R :   Y  *  C  S  Y  I  R  K  R  A  K  S  *  Y  *  S  I  *  S  *  Y  A  G  F  I  W  F  R  R  E  T  C  P  *  G  P  E  G  I   : G  R  *  C  *  K  S  Y  *  M  D  I  Q  Q  P  *  C  Q  Y  C  S  R  H  G  C  Y  Y  Q  *  W  S  C  S  *  Y  L  D  A  *  W  R  R  K :   I  Q  A  P  G  I  R  E  P  H  R  H  I  Y  P  L  W  P  L  C  R  S  Y  *  Q  R  W  P  V  G  D  F  Q  R  *  K  S  W  G  L  K  K  P  P  Y  G  Y  G  I  P  L  L  F  *  K  T  *  E  L  N  N  G  H  L  G  A  G  L  N  V  G  I  C  I  Q  D  Q  A  T  S  G  V  S  L  L  L  S  F  V  *  Q  V  E  Y  I  R  Q  M  S  L  V  T  C  I  D  L  R  R  I  Q  I  S  S  R  R  V  *  T  S  L  G  R  E  F  R  K  F  F  L  P  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42974" stop="43163"/>
                    <exon start="43300" stop="43357"/>
                    <exon start="43426" stop="43548"/>
                    <exon start="43833" stop="43921"/>
                    <exon start="44009" stop="44098"/>
                    <exon start="45198" stop="45368"/>
                    <exon start="45459" stop="45577"/>
                    <exon start="45686" stop="45812"/>
                    <exon start="46864" stop="47042"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1143</number_coding_nucleotides>
                  <number_encoded_amino_acids>381</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFFLHFIDQVERINSGTPNFDPSRSFKFGIEERLQCSSGKVTYNRRNDYILSLNIPLERAINKKELAEFQNLKAERAAGGKELSADEIVRPRVSLKDCLDCFSAPEEVHDFYSTALTARTTAIKTAGLTSFPDYLVLHMRKFVMEEGWVPKKLDVYIDVPETIDISSMRSNGIQPGEELLPDSAAGDGEQSIKLLADDDIVAQLVSMGFNLLHCQKAAINTSNSGVEAAMDWLLNHMNDPDIDAPISENVQNPDIDQSKVDTLVSFGFEEKLAHKALKASGGDVEKATEWIFSSPSASTAADMDVTTSSGAAVDTLMPDGGGKYRLLGFVSHIGTSTHCGHYVAHINKDGRWVIFNDEKVGVSKNPPMDMGYLYFFERLES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="67798" PGL_stop="68225"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67798" e_stop="68225"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="67798" e_stop="68225" e_length="428"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67798" stop="68225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1635" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTG</gDNA_template>
            <first_frame> Q  P  K  P  C  P  C  S  E  H  S  S  S  I  G  L  P  S  C  T  N  G  P  C  R  R  F  Q  N  *  W  A  S  W  S  W  *  R  Q  Q  S  L  P  R  W  T  V  L  *  P  I  G  P  S  R  *  P  N  N  F  R  G  T  Q  G  Q  G  N  Q  E  R  K  I  S  Y  V  L  H  V  W  I  L  R  S  S  Y  C  H  R  Q  R  P  T  *  K  S  I  G  S  P  *  Q  P  C  C  *  Q  C  M  G  L  R  N  *  V  C  S  W  I  L  N  F  F  H  I  S  T  L  *  L  C  T  T  Q  S  F  I  H  N  A  N  I   </first_frame>
            <second_frame>  N  P  N  L  V  H  A  Q  S  I  L  A  V  L  G  F  Q  V  V  L  M  G  L  V  E  G  F  R  I  N  G  L  P  G  V  G  E  G  N  N  L  Y  P  G  G  Q  Y  F  D  P  L  G  L  A  D  D  P  T  T  F  A  E  L  K  V  K  E  I  K  N  G  R  L  A  M  F  S  M  F  G  F  F  V  Q  A  I  V  T  G  K  G  P  L  E  N  L  L  D  H  L  D  N  P  V  A  N  N  A  W  V  Y  A  T  K  F  V  P  G  S  *  I  F  F  T  Y  R  L  C  S  F  V  P  L  N  H  S  F  I  M  Q  I  F  </second_frame>
            <third_frame>   T  Q  T  L  S  M  L  R  A  F  *  Q  Y  W  A  S  K  L  Y  *  W  A  L  *  K  V  S  E  L  M  G  F  L  E  L  V  K  A  T  I  S  T  Q  V  D  S  T  L  T  H  W  A  *  Q  M  T  Q  Q  L  S  R  N  S  R  S  R  K  S  R  T  E  D  *  L  C  S  P  C  L  D  S  S  F  K  L  L  S  P  A  K  A  H  L  K  I  Y  W  I  T  L  T  T  L  L  L  T  M  H  G  F  T  Q  L  S  L  F  L  D  L  K  F  F  S  H  I  D  F  V  A  L  Y  H  S  I  I  H  S  *  C  K  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67799" stop="68158"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="109194" PGL_stop="103749"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109194" e_stop="109009"/>
            <exon e_start="107276" e_stop="107218"/>
            <exon e_start="107079" e_stop="106989"/>
            <exon e_start="105938" e_stop="105884"/>
            <exon e_start="105789" e_stop="105699"/>
            <exon e_start="105594" e_stop="105360"/>
            <exon e_start="104501" e_stop="104294"/>
            <exon e_start="103856" e_stop="103749"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.217" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.993" e_score="0.953"/>
          <exon-intron don_prob="0.663" acc_prob="0.996" e_score="0.928"/>
          <exon-only e_score="0.880"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109194" e_stop="109009" e_length="186"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.988">
            <gDNA_intron_boundary i_start="109008" i_stop="107277" i_length="1732"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107276" e_stop="107218" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="0.217" acc_prob="1.000">
            <gDNA_intron_boundary i_start="107217" i_stop="107080" i_length="138"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107079" e_stop="106989" e_length="91"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="1.000">
            <gDNA_intron_boundary i_start="106988" i_stop="105939" i_length="1050"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105938" e_stop="105884" e_length="55"/>
          </exon>
          <intron i_serial="4" don_prob="0.917" acc_prob="0.996">
            <gDNA_intron_boundary i_start="105883" i_stop="105790" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="105789" e_stop="105699" e_length="91"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.970">
            <gDNA_intron_boundary i_start="105698" i_stop="105595" i_length="104"/>
          </intron>
          <exon e_serial="6" e_score="0.953">
            <gDNA_exon_boundary e_start="105594" e_stop="105360" e_length="235"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.993">
            <gDNA_intron_boundary i_start="105359" i_stop="104502" i_length="858"/>
          </intron>
          <exon e_serial="7" e_score="0.928">
            <gDNA_exon_boundary e_start="104501" e_stop="104294" e_length="208"/>
          </exon>
          <intron i_serial="7" don_prob="0.663" acc_prob="0.996">
            <gDNA_intron_boundary i_start="104293" i_stop="103857" i_length="437"/>
          </intron>
          <exon e_serial="8" e_score="0.880">
            <gDNA_exon_boundary e_start="103856" e_stop="103749" e_length="108"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109194" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109193" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105360"/>
              <exon start="104501" stop="104434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M4691-3" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109186" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M4691-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105764" stop="105699"/>
              <exon start="105594" stop="105360"/>
              <exon start="104501" stop="104294"/>
              <exon start="103856" stop="103749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M4691" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTCATCCAGTTGCATTTTTCTTTTGATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAG : ATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAA : GGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAG : GTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATT : CAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCGAGCAAA : ATATGAAGAGAAGAGGTGGGTCCCTAAGGATGGGATTCAAAAATCACCTTCCAGGGTTCAAGAAGAGAGGGCTTCGGTGCAATGGCAACAAAACAATGATAGAAGTGGGCGTATACATGCAGCTAGCTCAGGATGTGCATCTGACGAGAGGAAAAATATTCAAGCCTCGAAAGTGAAGCAAGATGTACCTGCTGCTAGAGTCAGTATACCAGTGCCTCCTAGAGGACCAGAGCAT : GTAACTTCAGGTCAGGTTGCTAACCAGACAAGTCAGAAAGCAGAGCCAGTTGCAGTCACTGAACCAGCTAAGCAGGTTCCGGAAGCTGCCAGTCCTCCTAAAGTTGATTATGCTACTGATCTATTTGACATGCTTTCTATGGATTGTCCAACTGACAATGGCTCAGAAGCAGCTTCTACCGATGATAACTCCTGGGCAGGCTTCCAGT : CTGCTCAAGAAGCAACAAAAGCAGAAAATACTGGGGTTACAAACTCCGTTGATCAGAAGAAGTCTCAATCTGCTGCTGCTTCTGGAATTGAAGATTTATTCAAGGATT</gDNA_template>
            <first_frame> F  L  I  Q  L  H  F  S  F  D  R  Y  L  R  V  G  E  G  R  N  Q  I  G  D  F  Y  F  P  I  A  S  L  S  V  G  *  F  A  *  T  L  A  I  V  I  M  N  E  K  A  N  V  T  K  E  L  N  A  K  H  R  K  :  I  L  E  G  L  L  K  L  P  E  N  R  E  C  A  D  C  K  A  K :   G  P  R  W  A  S  V  N  L  G  I  F  I  C  M  Q  C  S  G  I  H  R  S  L  G  V  H  I  S  K  :  V  R  S  A  T  L  D  T  W  L  P  E  Q  V  A  F  I  H   : S  M  G  N  E  R  S  N  S  F  W  E  A  E  L  P  P  N  Y  D  R  V  G  I  E  N  F  I  R  A  K :   Y  E  E  K  R  W  V  P  K  D  G  I  Q  K  S  P  S  R  V  Q  E  E  R  A  S  V  Q  W  Q  Q  N  N  D  R  S  G  R  I  H  A  A  S  S  G  C  A  S  D  E  R  K  N  I  Q  A  S  K  V  K  Q  D  V  P  A  A  R  V  S  I  P  V  P  P  R  G  P  E  H  :  V  T  S  G  Q  V  A  N  Q  T  S  Q  K  A  E  P  V  A  V  T  E  P  A  K  Q  V  P  E  A  A  S  P  P  K  V  D  Y  A  T  D  L  F  D  M  L  S  M  D  C  P  T  D  N  G  S  E  A  A  S  T  D  D  N  S  W  A  G  F  Q   : S  A  Q  E  A  T  K  A  E  N  T  G  V  T  N  S  V  D  Q  K  K  S  Q  S  A  A  A  S  G  I  E  D  L  F  K  D  </first_frame>
            <second_frame>  F  S  S  S  C  I  F  L  L  I  D  I  Y  A  S  E  R  G  G  I  R  S  A  I  F  I  F  R  *  L  L  S  P  S  V  N  S  L  K  P  L  L  S  S  S  *  M  R  R  L  M  L  L  K  S  L  M  R  S  I  E  R :   Y  *  K  D  F  L  S  C  P  R  T  G  N  V  Q  I  A  K  P   : R  V  L  D  G  Q  A  *  T  W  E  Y  L  Y  A  C  N  A  L  G  S  T  E  A  W  G  C  T  Y  Q  R :   S  D  Q  L  H  *  T  H  G  F  L  N  K  L  H  L  S  I  :  Q  W  E  M  R  G  Q  I  V  F  G  K  Q  S  C  L  Q  I  M  I  E  L  V  L  R  I  S  S  E  Q   : N  M  K  R  R  G  G  S  L  R  M  G  F  K  N  H  L  P  G  F  K  K  R  G  L  R  C  N  G  N  K  T  M  I  E  V  G  V  Y  M  Q  L  A  Q  D  V  H  L  T  R  G  K  I  F  K  P  R  K  *  S  K  M  Y  L  L  L  E  S  V  Y  Q  C  L  L  E  D  Q  S  M :   *  L  Q  V  R  L  L  T  R  Q  V  R  K  Q  S  Q  L  Q  S  L  N  Q  L  S  R  F  R  K  L  P  V  L  L  K  L  I  M  L  L  I  Y  L  T  C  F  L  W  I  V  Q  L  T  M  A  Q  K  Q  L  L  P  M  I  T  P  G  Q  A  S  S  :  L  L  K  K  Q  Q  K  Q  K  I  L  G  L  Q  T  P  L  I  R  R  S  L  N  L  L  L  L  L  E  L  K  I  Y  S  R  I </second_frame>
            <third_frame>   S  H  P  V  A  F  F  F  *  *  I  F  T  R  R  R  G  E  E  S  D  R  R  F  L  F  S  D  S  F  S  L  R  R  L  I  R  L  N  P  C  Y  R  H  H  E  *  E  G  *  C  Y  *  R  A  *  C  E  A  *  K   : D  T  R  R  T  S  *  V  A  R  E  Q  G  M  C  R  L  Q  S  Q  :  G  S  *  M  G  K  R  E  P  G  N  I  Y  M  H  A  M  L  W  D  P  Q  K  P  G  G  A  H  I  K   : G  Q  I  S  Y  T  R  H  M  A  S  *  T  S  C  I  Y  P  F :   N  G  K  *  E  V  K  *  F  L  G  S  R  A  A  S  K  L  *  *  S  W  Y  *  E  F  H  P  S  K  :  I  *  R  E  E  V  G  P  *  G  W  D  S  K  I  T  F  Q  G  S  R  R  E  G  F  G  A  M  A  T  K  Q  *  *  K  W  A  Y  T  C  S  *  L  R  M  C  I  *  R  E  E  K  Y  S  S  L  E  S  E  A  R  C  T  C  C  *  S  Q  Y  T  S  A  S  *  R  T  R  A   : C  N  F  R  S  G  C  *  P  D  K  S  E  S  R  A  S  C  S  H  *  T  S  *  A  G  S  G  S  C  Q  S  S  *  S  *  L  C  Y  *  S  I  *  H  A  F  Y  G  L  S  N  *  Q  W  L  R  S  S  F  Y  R  *  *  L  L  G  R  L  P  V :   C  S  R  S  N  K  S  R  K  Y  W  G  Y  K  L  R  *  S  E  E  V  S  I  C  C  C  F  W  N  *  R  F  I  Q  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109077" stop="109009"/>
                    <exon start="107276" stop="107218"/>
                    <exon start="107079" stop="106989"/>
                    <exon start="105938" stop="105884"/>
                    <exon start="105789" stop="105699"/>
                    <exon start="105594" stop="105360"/>
                    <exon start="104501" stop="104294"/>
                    <exon start="103856" stop="103750"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>915</number_coding_nucleotides>
                  <number_encoded_amino_acids>305</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLAIVIMNEKANVTKELNAKHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIHSMGNERSNSFWEAELPPNYDRVGIENFIRAKYEEKRWVPKDGIQKSPSRVQEERASVQWQQNNDRSGRIHAASSGCASDERKNIQASKVKQDVPAARVSIPVPPRGPEHVTSGQVANQTSQKAEPVAVTEPAKQVPEAASPPKVDYATDLFDMLSMDCPTDNGSEAASTDDNSWAGFQSAQEATKAENTGVTNSVDQKKSQSAAASGIEDLFKD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="120841" PGL_stop="119786"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120841" e_stop="120545"/>
            <exon e_start="120442" e_stop="120320"/>
            <exon e_start="119909" e_stop="119786"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.530" acc_prob="0.997" e_score="0.993"/>
          <exon-intron don_prob="0.999" acc_prob="0.758" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="120841" e_stop="120545" e_length="297"/>
          </exon>
          <intron i_serial="1" don_prob="0.530" acc_prob="0.997">
            <gDNA_intron_boundary i_start="120544" i_stop="120443" i_length="102"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120442" e_stop="120320" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.758">
            <gDNA_intron_boundary i_start="120319" i_stop="119910" i_length="410"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119909" e_stop="119786" e_length="124"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120841" stop="120545"/>
              <exon start="120442" stop="120320"/>
              <exon start="119909" stop="119786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1871" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATT : GTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAG : CCTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACC</gDNA_template>
            <first_frame> V  *  F  W  F  S  C  W  L  T  T  N  M  E  L  D  L  D  R  G  Q  V  T  L  I  A  S  S  I  C  L  M  L  T  L  H  F  S  I  Q  L  V  T  E  H  F  T  S  W  K  K  P  K  E  Q  K  A  I  I  I  I  V  L  M  A  P  L  Y  A  I  V  S  F  I  G  L  V  D  F  M  G  S  K  P  F  F  T  F  L  E  S  V  K  E  C  Y  E  A  I  :  V  M  A  K  F  L  G  L  M  Y  T  Y  L  N  I  S  I  S  K  N  I  V  P  D  E  I  K  G  R  Q  I  H  H  S  F  P  M  T  L  F  Q  :  P  H  T  A  H  L  N  H  H  T  L  K  L  L  K  N  W  T  W  Q  F  V  V  I  R  P  V  C  S  I  L  M  I  V  L  Q  M  F  G  V  Y  </first_frame>
            <second_frame>  F  D  F  G  F  L  V  G  *  Q  Q  I  W  N  W  I  W  I  V  G  K  S  H  *  *  H  P  V  Y  V  L  C  *  L  Y  I  S  A  Y  S  *  *  Q  N  I  L  R  H  G  R  S  L  K  S  K  R  P  *  L  L  S  S  S  W  H  L  C  M  L  L  S  P  S  L  G  W  S  I  S  W  E  A  N  P  F  S  L  S  W  N  L  S  K  N  V  M  K  Q  L :   *  W  L  S  S  W  G  *  C  T  L  T  *  I  Y  P  *  A  K  T  *  S  L  M  K  L  R  E  D  R  F  T  T  H  S  Q  *  H  S  S  S :   L  T  L  L  I  *  T  I  I  H  *  S  F  S  R  T  G  H  G  S  L  L  *  F  A  L  Y  A  L  F  *  *  L  F  Y  K  C  L  E  C  T </second_frame>
            <third_frame>   L  I  L  V  F  L  L  A  N  N  K  Y  G  I  G  S  G  S  W  A  S  H  T  D  S  I  Q  Y  M  S  Y  A  D  F  T  F  Q  H  T  A  S  D  R  T  F  Y  V  M  E  E  A  *  R  A  K  G  H  N  Y  Y  R  P  H  G  T  F  V  C  Y  C  L  L  H  W  V  G  R  F  H  G  K  Q  T  L  F  H  F  L  G  I  C  Q  R  M  L  *  S  N   : C  D  G  *  V  P  G  V  D  V  H  L  L  E  Y  I  H  K  Q  K  H  S  P  *  *  N  *  G  K  T  D  S  P  L  I  P  N  D  T  L  P   : A  S  H  C  S  F  E  P  S  Y  I  E  A  S  Q  E  L  D  M  A  V  C  C  D  S  P  C  M  L  Y  F  N  D  C  F  T  N  V  W  S  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120835" stop="120545"/>
                    <exon start="120442" stop="120320"/>
                    <exon start="119909" stop="119787"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FWFSCWLTTNMELDLDRGQVTLIASSICLMLTLHFSIQLVTEHFTSWKKPKEQKAIIIIVLMAPLYAIVSFIGLVDFMGSKPFFTFLESVKECYEAIVMAKFLGLMYTYLNISISKNIVPDEIKGRQIHHSFPMTLFQPHTAHLNHHTLKLLKNWTWQFVVIRPVCSILMIVLQMFGVY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 17 chains have been computed
$ 
$ memory statistics:
$ 16720 bytes spliced alignments in total
$ 8 spliced alignments have been stored
$ 2090 bytes was the average size of a spliced alignment
$ 9600 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2400 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 17 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-08 07:38:20
-->
