<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-18 00:17:03"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U345879" ref_strand="+" ref_description="SGN-U345879        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G21380.1 | Symbol: None | S-locus protein kinase, putative (ARK3), identical to PIR:T05180:T05180 S-receptor kinase ARK3 precursor - (Arabidopsis thaliana) | chr4:11388936-11393237 REVERSE | Aliases: T6K22.110, T6K22_110 (evalue: 6e-22, score=101) genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>taatttaggcatggttactttggattgaaggcaacgcgttggaactgatagacgaatgtatcaaagaatccttttcagaatctcaagtgttgagatgcatccaggttggtttgttatgcgtccaaaaactccccgaggataggcctacaatggcatcagtagttttctggttaggcaatgaaggtctggttcttcctcaaccaaagcgacctggttttttcattgagaggaattcaatggattcaactaaatcatcaactgatgaaggatatttaagtaacaacgtatcgataacaatcctggagccaagatagatataagttccaataattggaacttttgaaatgtattcactttgtcctgttttgtcaaacactgatagtgtatatgtgactatatatgaggtgaattgacatgtattctttctgtacaataagagatgtaatgaatttgcctattctgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="14298" stop="15362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14598" g_stop="15062" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-U345879" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14598" e_stop="15062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTAGGCATGGTTACTTTGGATTGAAGGCAACGCGTTGGAACTGATAGACGAATGTATCAAAGAATCCTTTTCAGAATCTCAAGTGTTGAGATGCATCCAGGTTGGTTTGTTATGCGTCCAAAAACTCCCCGAGGATAGGCCTACAATGGCATCAGTAGTTTTCTGGTTAGGCAATGAAGGTCTGGTTCTTCCTCAACCAAAGCGACCTGGTTTTTTCATTGAGAGGAATTCAATGGATTCAACTAAATCATCAACTGATGAAGGATATTTAAGTAACAACGTATCGATAACAATCCTGGAGCCAAGATAGATATAAGTTCCAATAATTGGAACTTTTGAAATGTATTCACTTTGTCCTGTTTTGTCAAACACTGATAGTGTATATGTGACTATATATGAGGTGAATTGACATGTATTCTTTCTGTACAATAAGAGATGTAATGAATTTGCCTATTCTGAGT</genome_strand>
        <mrna_strand>TAATTTAGGCATGGTTACTTTGGATTGAAGGCAACGCGTTGGAACTGATAGACGAATGTATCAAAGAATCCTTTTCAGAATCTCAAGTGTTGAGATGCATCCAGGTTGGTTTGTTATGCGTCCAAAAACTCCCCGAGGATAGGCCTACAATGGCATCAGTAGTTTTCTGGTTAGGCAATGAAGGTCTGGTTCTTCCTCAACCAAAGCGACCTGGTTTTTTCATTGAGAGGAATTCAATGGATTCAACTAAATCATCAACTGATGAAGGATATTTAAGTAACAACGTATCGATAACAATCCTGGAGCCAAGATAGATATAAGTTCCAATAATTGGAACTTTTGAAATGTATTCACTTTGTCCTGTTTTGTCAAACACTGATAGTGTATATGTGACTATATATGAGGTGAATTGACATGTATTCTTTCTGTACAATAAGAGATGTAATGAATTTGCCTATTCTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U328396" ref_strand="+" ref_description="SGN-U328396        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | calcium-binding EF-hand protein, putative, similar to EF-hand Ca2+-binding protein CCD1 (Triticum aestivum) GI:9255753; contains INTERPRO:IPR002048 calcium-binding EF-hand domain | chr5:22138630-22139157 FORWARD | Aliases: F24B18.11, F24B18_11(evalue: 3e-28, score=122) genbank/nr: Calcium-binding(evalue: 1e-33, score=146)">
      <seq>acaacacatacacacacaacatctctttagtgatcgcgagaaatggaagatccttatggatttgaagatcatttcccttcaatgatggagagattaggcgcggaaggattcatgagggagctttgcaatggattttgtttacttatggatgtgagtatagggctaataacatatgaaagtttgaagagaaacactatgaatcttggtttaaatgatttaagagatgatgagttgatttacatgttggctgaaggagatttggatggtgatggagcacttaatcaaatggaattttgtattctcatgtttagattgagtcctggtttaatggatggatctaagcaatacatggatgatgtggggcttattcatttccaaccctaactaggttttttattaattccttaatttgtgtgttttattgatgtaacttgtattaatatcatgagagatatgatgatgatgatgatgaagatcttatgccaaataaataattctccatgtatatctatttgtgtgtgttgatttgaaggagtgatgattattaattatcaaactacaatatcaggcatttccaacttcataatgtttcatcttttgtacgtttgttcagtaaaataatgaaggatatgccttattaatggggaatagatgaaagggtttgttatatgttgactaggtcgattagaaagtgtaaaaacatctcgattctttttaaatattgtattttgggatggatgactaatttggggcttatgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="18178" stop="19540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18478" g_stop="19240" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="762" r_length="762" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-U328396" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18478" e_stop="19240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACACATACACACACAACATCTCTTTAGTGATCGCGAGAAATGGAAGATCCTTATGGATTTGAAGATCATTTCCCTTCAATGATGGAGAGATTAGGCGCGGAAGGATTCATGAGGGAGCTTTGCAATGGATTTTGTTTACTTATGGATGTGAGTATAGGGCTAATAACATATGAAAGTTTGAAGAGAAACACTATGAATCTTGGTTTAAATGATTTAAGAGATGATGAGTTGATTTACATGTTGGCTGAAGGAGATTTGGATGGTGATGGAGCACTTAATCAAATGGAATTTTGTATTCTCATGTTTAGATTGAGTCCTGGTTTAATGGATGGATCTAAGCAATACATGGATGATGTGGGGCTTATTCATTTCCAACCCTAACTAGGTTTTTTATTAATTCCTTAATTTGTGTGTTTTATTGATGTAACTTGTATTAATATCATGAGAGATATGATGATGATGATGATGAAGATCTTATGCCAAATAAATAATTCTCCATGTATATCTATTTGTGTGTGTTGATTTGAAGGAGTGATGATTATTAATTATCAAACTACAATATCAGGCATTTCCAACTTCATAATGTTTCATCTTTTGTACGTTTGTTCAGTAAAATAATGAAGGATATGCCTTATTAATGGGGAATAGATGAAAGGGTTTGTTATATGTTGTCTAGGTCGATTAGAAGGTGTAAAAACATCTCGATTCTTTTTAAATTATTTTATTTTGGGATGGATGACTAATTTGGGGCTTATGATTC</genome_strand>
        <mrna_strand>ACAACACATACACACACAACATCTCTTTAGTGATCGCGAGAAATGGAAGATCCTTATGGATTTGAAGATCATTTCCCTTCAATGATGGAGAGATTAGGCGCGGAAGGATTCATGAGGGAGCTTTGCAATGGATTTTGTTTACTTATGGATGTGAGTATAGGGCTAATAACATATGAAAGTTTGAAGAGAAACACTATGAATCTTGGTTTAAATGATTTAAGAGATGATGAGTTGATTTACATGTTGGCTGAAGGAGATTTGGATGGTGATGGAGCACTTAATCAAATGGAATTTTGTATTCTCATGTTTAGATTGAGTCCTGGTTTAATGGATGGATCTAAGCAATACATGGATGATGTGGGGCTTATTCATTTCCAACCCTAACTAGGTTTTTTATTAATTCCTTAATTTGTGTGTTTTATTGATGTAACTTGTATTAATATCATGAGAGATATGATGATGATGATGATGAAGATCTTATGCCAAATAAATAATTCTCCATGTATATCTATTTGTGTGTGTTGATTTGAAGGAGTGATGATTATTAATTATCAAACTACAATATCAGGCATTTCCAACTTCATAATGTTTCATCTTTTGTACGTTTGTTCAGTAAAATAATGAAGGATATGCCTTATTAATGGGGAATAGATGAAAGGGTTTGTTATATGTTGACTAGGTCGATTAGAAAGTGTAAAAACATCTCGATTCTTTTTAAA-TATTGTATTTTGGGATGGATGACTAATTTGGGGCTTATGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U321053" ref_strand="+" ref_description="SGN-U321053        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | universal stress protein (USP) family protein, contains Pfam PF00582: universal stress protein family domain; similar to ethylene-responsive ER6 protein (GI:5669654) (Lycopersicon esculentum) | chr1:3821460-3823053 REVERSE | Aliases: T23J18.35, T23J18_35(evalue: 4e-62, score=235) genbank/nr: gi|30682191|ref|NP_849638.1| universal stress protein (USP) family protein [Arabidopsis thaliana] >gi|30682187|ref|NP_563888.2| universal stress protein (USP) family protein [Arabidopsis thaliana] (evalue: 3e-60, score=235)">
      <seq>tggcggccaaatcggccgaattgaacagttaatcaattattccccttctagattctctcatattcctcctcctcctccttcttcatcatcatcaaatagagcaattctcgctgccatagcgataaacaagcatcaaatcaaacaaacaaaatcaattcaaaagaaaagaaaaggtcaactcccataagaatgcagcaacaacccccatcccccacccccgattccgatctcccccgtctagctaacatcaaaatcaaatcatcttctccacgttttcccccacccaccaccccttccatcactgatacacctaccgccggagctcagcggaggatcggaatcgccgtcgatctaagcgacgagtctgctttcgccgttaagtgggctgtcaatcagtacctccgtcctggtgacgctgttatccttgttcacgtccgtccaacttccgtactctacggtgctgattggggatctgttgagttatctattgttgatacggagaatgaggagagtcagaggaagcttgaggatgatttcgatacgtttactactactaaagcgtctgatttagctcagcctttggttgatgctcagattccgtttaagatccatattgttaaggatcatgatatgagggagaggttgtgtcttgaggttgagaggttagggcttagtgctgttattatggggagtcgaggatttggagctactaagagggggagtgatggaagacttgggagtgttagtgattattgtgttaggcactgtgtttgtcctgttgtggttgttaggtatcccgatgataaggatgctggaaatgctgttgtagagcccgtggtttctgttgcttcagctgctgaagaagacgaggaggaagctgagtaccatgatgcttctgaggatcgaaaagattcataatgaaggtggacgaggtcttcccttggtttgcacttgtattgaccagcttcctccaagaaccagtaggccctttgtgacatctggagtcattttatgtatatgaactgttgtagctcgtctctcgcaacatcaacttattatggtttcttcttgatgattgtatctactatggttatcatcttcacaatattgttacttgattgcctttggatacttgctgtgcaatctaaaacttttttatgacttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="25038" stop="20969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24721" g_stop="23844" g_length="878"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="910" r_length="882" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23843" i_stop="21524" i_length="2320">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21523" g_stop="21269" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="911" r_stop="1164" r_length="254" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1165" polyA_stop="1177"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-U321053" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>1133</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24721" e_stop="23844"/>
          <exon e_start="21523" e_stop="21269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATCAATTATTCCCCTTCTAGATTCTCTCATA-T--TCCTCCTCCTCCTTCTTCTTCATCATCAAATAGAGCAATTCTCGCTGCCATAGCGATAAACAAGCATCAAATCAAACAAACAAAATCAATTCAAAAGAAAA-AAAAGGTCAACTCCCCTAAGAATGCAGCAACAACCCCCATCCCCCACCCCCGATTCCGATCTCCCCCGTCTAGCTAACATCAAAATCAAATCATCTTCTCCACGTTTTCCCCCACCCACCACCCCTTCCATCACTGATACACCTACCGCCGGAGCTCAGCGGAGGATCGGAATCGCCGTCGATCTAAGCGACGAGTCTGCTTTCGCCGTTAAGTGGGCTGTGAATCAGTACCTCCGTCCTGGTGACGCTGTTATCCTTGTTCACGTCCGTCCAACTTCCGTACTCTACGGTGCTGATTGGGGATCTGTTGAGCTATCTATTGTTGATACGGAGAATGAGGAGAGTCAGAGGAAGCTTGAGGATGATTTCGATACGTTTACTACTACTAAAGCGTCTGATTTAGCTCAGCCTTTGGTTGATGCTCAGATTCCGTTTAAGATCCATATTGTTAAGGATCATGATATGAGGGAGAGGTTGTGTCTTGAGGTTGAGAGGTTAGGGCTTAGTGCTGTTATTATGGGGAGTCGAGGATTTGGAGCTACGAAGAGGGGGAGTGATGGAAGACTTGGGAGTGTTAGTGATTATTGTGTTAGGCACTGTGTGTGTCCTGTTGTGGTTGTTAGGTATCCCGATGATAAGGATGCTGGAAATGCTGTTGTAGAGCCCGTGGTTTCTGTTGCTTCAGCTGCTGAAGAAGACGAGGAGGAAGCTGAGTACCATGATGCTTCTGAGGATCGAAAAGGTATGCCGATTGTTACTATTTTTCATTTAAGCATTTTTCTTTATTTGGATTATCAAATGTTGTTCTTTATGCTTATTTCTTCATTATTAAGTATTCTATTATGTTTCTGATGATCTTCATGTATAATAGCAATCAGTTAATGTTGTGCTTCCTTGATAGTTTTCTCCTTTAACAGTTACTCTGCTCCTAAACGAACAATCAGGTTAGAGAGGACTGATTTCTTGTTAATTTTCTGTTTGATATTGGACATTGTACTATAAAGTTAAGTTCAACTACGTAGGAGTAATATTAATTGAGAAGTTGAAAGGAAGTAAGTGGGGATACTGAATTCGAAATTCAGCATTCCTCCTTCCTCCACTCTTAACTGAAAAAAAAGTGAGGTCTTTGCCTCCCCGACCATTGCTAGTTCCTCCATCCTCATAAAATTTTCTAGTACATTTTCATCCCCATCTTTTAATAGGTTTAGTTTATGTTTCTGTTCCTGTTATTTGTCTTGATTGACAAAAATAACCGGTTCTATTTTGGAATGTTGCAGGCTGTTTTTGTTTAAATATATAAGGATGAGCTTAATGCTTTTATGATTCATAGACTTGATTTCCGTAATAATTTGGGGCAAAATGTAATGTGGTCATGATTGTTTTCTCTGTTATTGACATCATACATAGGAATCCTGGGTGTATAAATTACCAGAAATGTGAAAAGGAATTATTTTGGGGTAGGCAGGTACTTAGTTCTGAGAGAATAACACAGGGTAAGCCTGTTTTAGAATAACAGTCATGTGAGTTAAATCCTAAAGCTAATTCTCTTCTAGTTTCCAAATGTCGTGTTGTAGTAAATTCGTGTTTAAGTTCAATTTAAGGTTGGACTTATGGGTTGAAAGGTCCAAAAATACAAAAATGGTTGGAATTATGAGTTATCTTGAATCAACCAATCCCTTACCCAAGACAAGATCTCGAATCAACCAATCGTCATATATTTCATTGGTTTGTTACCTAACCACGACTTTAGGTTTTCTCTAAGGGGATTACCATCTTTCAATGAGTGAACTGGTGGTAAATCTGATCCTAGTAATAAAAGAAGAAGAGAAAGGAAAAAAAGAAGAAGAGTGAAGTTGTGATAGATTAAATGCCAAGTCCAAAGCCGCCTTTTCAAATTTGTCACCTATCAAGCGACATGCATGCCCTAATTTGGCATTTCCAAGTGTGAGCAAAATCCAAGGTCATCTTTTTAATGATTTGGCTCTGCTCTAGTCTTCTAGATGCTGTTCTTTTATCATCCACATGCTTACCATGAAACTATTAACTTACCTTAAGATTAGTTGGGAAAGAAAAAGTGTACATAAAGAGTGTTTTGGTTCTGGGTGATGAAAAGATAGACAACCCTATAGTGTATATGCTTGTTAAGCCAGAAAGATCTCCTTTAAGCATGGAAAGTGGTGTAGACATTTGAGGCTATTATTATCTTATTATCCATCAGATATTTAGTTTACTTGCGCAGAAACACCGACAATTCTGATTGGAAGCAGGTTTCAGTTCTTTTAAGATGCAGTACTGATTCAGGAAGACGTGGTTTCTTTTGGTTGATTCCCTTTCTGGTTTTAGTCAAGGAATTAATGAAAATAAGATGAATGGTTTTGCATATCCTTGATGCCAGTAATGAAAACATCTAACTTCATCAGAAAAAAGAAAGAAATGAAATGAATGCAACCAATATATGTCATATTTACTCACATTTTATGTAATTTCAATTTCTTCAAGTGATGGCAAGTGTGGAAGTTGCACTAGCCCTTTTCCAAGGATACTCACTTCTTTAACCATTTATGATGCAGTTGCGTCGATTTAAGAAATAAGTTTGTGTCACATTGAAAGTAATTGCCCATTTACCTTTTTGAAGTCTATTCTTCTAGTAGAGTTGATACAAGAGAGAACAGTTGAAGGATGTTATTCAAATCTCCAAATTTACATCAATTTCAGAATTATAAGGAATTTGTTTTCCTAGAGGACGTGTTTTTCAAAACATTTTGACCAACCAAACAGGGGGAAAACACACCATCAATGAGTATGTGAGATTCTGTTTAGAAATGAAATTGTTGTGCAGATAGTTGCAACCTGGCTGAACACATCCTCAGTTGTATTACTTTTTTTCTGTCTTGATCTTCGAGTATCATTAATTAGTTTGTGGAGTCTGCTTTTCAAGATTATTGAGAGGTTTGAATCAACTTTTGTAGCTCCTTCACTTATTCTCATCTCCATTATTTTACGACTCCAATTACTCCCATCTCCTACTGCTTTGCTAAGCTGTTCTTGATTCTTTTTGACAGATTCATAATGAAGGTGGACGAGGTCTTCCCTTGGTTTGCACTTGTATTGACCAGCTTCCTCCAAGAACCAGTAGGCCCTTTGTGACATCTGGAGTCATTTTATGTATATGAACTGTTGTAGCTCGTCTCTCGCAACATCAACTTATTATGGTTTCTTCTTGATGATTGTATCTACTATGGTTATCATCTTCACAATATTGTTACTTGATTGCCTTTGGATACTTGCTGTGCAATCTAAAACTTTTTTTATGACTT</genome_strand>
        <mrna_strand>TTAATCAATTATTCCCCTTCTAGATTCTCTCATATTCCTCCTCCTCCTCCTTCTTCATCATCATCAAATAGAGCAATTCTCGCTGCCATAGCGATAAACAAGCATCAAATCAAACAAACAAAATCAATTCAAAAGAAAAGAAAAGGTCAACTCCCATAAGAATGCAGCAACAACCCCCATCCCCCACCCCCGATTCCGATCTCCCCCGTCTAGCTAACATCAAAATCAAATCATCTTCTCCACGTTTTCCCCCACCCACCACCCCTTCCATCACTGATACACCTACCGCCGGAGCTCAGCGGAGGATCGGAATCGCCGTCGATCTAAGCGACGAGTCTGCTTTCGCCGTTAAGTGGGCTGTCAATCAGTACCTCCGTCCTGGTGACGCTGTTATCCTTGTTCACGTCCGTCCAACTTCCGTACTCTACGGTGCTGATTGGGGATCTGTTGAGTTATCTATTGTTGATACGGAGAATGAGGAGAGTCAGAGGAAGCTTGAGGATGATTTCGATACGTTTACTACTACTAAAGCGTCTGATTTAGCTCAGCCTTTGGTTGATGCTCAGATTCCGTTTAAGATCCATATTGTTAAGGATCATGATATGAGGGAGAGGTTGTGTCTTGAGGTTGAGAGGTTAGGGCTTAGTGCTGTTATTATGGGGAGTCGAGGATTTGGAGCTACTAAGAGGGGGAGTGATGGAAGACTTGGGAGTGTTAGTGATTATTGTGTTAGGCACTGTGTTTGTCCTGTTGTGGTTGTTAGGTATCCCGATGATAAGGATGCTGGAAATGCTGTTGTAGAGCCCGTGGTTTCTGTTGCTTCAGCTGCTGAAGAAGACGAGGAGGAAGCTGAGTACCATGATGCTTCTGAGGATCGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATAATGAAGGTGGACGAGGTCTTCCCTTGGTTTGCACTTGTATTGACCAGCTTCCTCCAAGAACCAGTAGGCCCTTTGTGACATCTGGAGTCATTTTATGTATATGAACTGTTGTAGCTCGTCTCTCGCAACATCAACTTATTATGGTTTCTTCTTGATGATTGTATCTACTATGGTTATCATCTTCACAATATTGTTACTTGATTGCCTTTGGATACTTGCTGTGCAATCTAAAAC-TTTTTTATGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U342044" ref_strand="+" ref_description="SGN-U342044        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tattgacatcatacataggaatcctgggtgcataaattaccagaaatgtgaataggaattattttgggtaggcaggtgcttagttctgagagaataacacgggttaagcctgttttagaataacagtcatgtgagttaaatcctaaagctaattctcttctagtttccaaatgtcgtgttgtagtaaattcgtgttaaagttcaatttaaggttggacttatgggttgaaaggtccaaaaaatacaaaaatggttggaattatgagttatcttgaatcaacaaatccattacccaagacaagatctcgaatcaaccaatcgtcacatatttcatggtttgttacctaaccacgactttaggttttctctgaaggggattaccatctttcaatgagtgaactggtggtaaatctgatcctagtaataaaagaagaagagaaaggaaaaaaagaagaagagtgaagttgtgatcaattaaataccaagtccaaagccgccttttcaaatttgtcacctatcaagcgacatgtatgccctaatttggtatttccaagtgtgagcaaaatccaaggtcagctttttaatgatttggctctgctctagtcttctagatgctgttctttttatcatccacatgcttaccatgaaactgttaacttaccttaagattagttgggaaagaaaaagtgtacataaagagtgttttggttccgggtgatgaaaggatagacaaccctatggtgtatatgcttgttaagccagaaagatctcctttaagcatggaaagtggtgtagacatttgaggctattattatattattattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="23496" stop="22072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23196" g_stop="22372" g_length="825"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="826" r_length="826" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-U342044" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23196" e_stop="22372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGACATCATACATAGGAATCCTGGGTGTATAAATTACCAGAAATGTGAAAAGGAATTATTTTGGGGTAGGCAGGTACTTAGTTCTGAGAGAATAACACAGGGTAAGCCTGTTTTAGAATAACAGTCATGTGAGTTAAATCCTAAAGCTAATTCTCTTCTAGTTTCCAAATGTCGTGTTGTAGTAAATTCGTGTTTAAGTTCAATTTAAGGTTGGACTTATGGGTTGAAAGGTCC-AAAAATACAAAAATGGTTGGAATTATGAGTTATCTTGAATCAACCAATCCCTTACCCAAGACAAGATCTCGAATCAACCAATCGTCATATATTTCATTGGTTTGTTACCTAACCACGACTTTAGGTTTTCTCT-AAGGGGATTACCATCTTTCAATGAGTGAACTGGTGGTAAATCTGATCCTAGTAATAAAAGAAGAAGAGAAAGGAAAAAAAGAAGAAGAGTGAAGTTGTGATAGATTAAATGCCAAGTCCAAAGCCGCCTTTTCAAATTTGTCACCTATCAAGCGACATGCATGCCCTAATTTGGCATTTCCAAGTGTGAGCAAAATCCAAGGTCATCTTTTTAATGATTTGGCTCTGCTCTAGTCTTCTAGATGCTGTTC-TTTTATCATCCACATGCTTACCATGAAACTATTAACTTACCTTAAGATTAGTTGGGAAAGAAAAAGTGTACATAAAGAGTGTTTTGGTTCTGGGTGATGAAAAGATAGACAACCCTATAGTGTATATGCTTGTTAAGCCAGAAAGATCTCCTTTAAGCATGGAAAGTGGTGTAGACATTTGAGGCTATTATTATCTTATTATCCA</genome_strand>
        <mrna_strand>TATTGACATCATACATAGGAATCCTGGGTGCATAAATTACCAGAAATGTGAATAGGAATTATTTT-GGGTAGGCAGGTGCTTAGTTCTGAGAGAATAACACGGGTTAAGCCTGTTTTAGAATAACAGTCATGTGAGTTAAATCCTAAAGCTAATTCTCTTCTAGTTTCCAAATGTCGTGTTGTAGTAAATTCGTGTTAAAGTTCAATTTAAGGTTGGACTTATGGGTTGAAAGGTCCAAAAAATACAAAAATGGTTGGAATTATGAGTTATCTTGAATCAACAAATCCATTACCCAAGACAAGATCTCGAATCAACCAATCGTCACATATTTCA-TGGTTTGTTACCTAACCACGACTTTAGGTTTTCTCTGAAGGGGATTACCATCTTTCAATGAGTGAACTGGTGGTAAATCTGATCCTAGTAATAAAAGAAGAAGAGAAAGGAAAAAAAGAAGAAGAGTGAAGTTGTGATCAATTAAATACCAAGTCCAAAGCCGCCTTTTCAAATTTGTCACCTATCAAGCGACATGTATGCCCTAATTTGGTATTTCCAAGTGTGAGCAAAATCCAAGGTCAGCTTTTTAATGATTTGGCTCTGCTCTAGTCTTCTAGATGCTGTTCTTTTTATCATCCACATGCTTACCATGAAACTGTTAACTTACCTTAAGATTAGTTGGGAAAGAAAAAGTGTACATAAAGAGTGTTTTGGTTCCGGGTGATGAAAGGATAGACAACCCTATGGTGTATATGCTTGTTAAGCCAGAAAGATCTCCTTTAAGCATGGAAAGTGGTGTAGACATTTGAGGCTATTATTATATTATTATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U343236" ref_strand="+" ref_description="SGN-U343236        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:8670025-8672107 REVERSE | Aliases: T2G17.12, T2G17_12(evalue: 1e-06, score=50.4) genbank/nr: hypothetical(evalue: 0.0001, score=50.4)">
      <seq>aaaaacacctttcttactgcctcttccccaccccaccaactcacaaaatttcaactactgttccattgaaaatggctacttctcttcagttttcttcagatcatcaccctattcctcaggaaaatcatcaaacaacgaaccagacctcaacgggaggacgtagaaggtcgagtaaaaatggacagaagaagaagaagcaaccacaaagaggaatgggagttgaacaactcgaacgtcttcgagtacaagatcagatgaaaaacagtacaatccatggcgttcatcataatcatcagtactactctaataacaatttccctaaattaactcctgtttcatcatttaccggcggtggtagtgctagtgctgatcctggaaattatagtaattctattttgaactcttcaccagtacttcagttccccaaattgtgtgcagtgagccctaatgatttttttatgcaacaaaaagttgtgaatactgggtttattggatctagtagtacaaatcagttgatgatttcttctcatgatcatcatcagtttcaatctcagatgaatctctacggatttgcaacttctaagcccagtactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="28111" stop="26918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27811" g_stop="27218" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-U343236" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27811" e_stop="27218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACACCTTTCTTACTGCCTCTTCCCCACCCCACCAACTCACAAAATTTCAACTACTGTTCCATTGAAAATGGCTACTTCTCTTCAGTTTTCTTCAGATCATCACCCTATTCCTCAGGAAAATCATCAAACAACGAACCAGACCTCAACGGGAGGACGTAGAAGGTCGAGTAAAAATGGACAGAAGAAGAAGAAGCAACCACAAAGAGGAATGGGAGTTGAACAACTCGAACGTCTTCGAGTACAAGATCAGATGAAAAACAGTACTATCCATGGCGTTCATCATAATCATCAGTACTACTCTAATAACAATTTCCCTAAATTAACTCCTGTTTCATCATTTACCGGCGGTGGTAGTGCTAGTGCTGATCCTGGAAATTATAGTAATTCTATTTTGAACTCTTCACCAGTACTTCAGTTCCCCAAATTGTGTGCAGTGAGCCCTAATGATTTTTTTATGCAACAAAAAGTTGTGAATACTGGGTTTATTGGATCTAGTAGTACAAATCAGTTGATGATTTCTTCTCATGATCATCATCAGTTTCAATCTCAGATGAATCTCTACGGATTTGCAACTTCTAAGCCCAGTACTG</genome_strand>
        <mrna_strand>AAAAACACCTTTCTTACTGCCTCTTCCCCACCCCACCAACTCACAAAATTTCAACTACTGTTCCATTGAAAATGGCTACTTCTCTTCAGTTTTCTTCAGATCATCACCCTATTCCTCAGGAAAATCATCAAACAACGAACCAGACCTCAACGGGAGGACGTAGAAGGTCGAGTAAAAATGGACAGAAGAAGAAGAAGCAACCACAAAGAGGAATGGGAGTTGAACAACTCGAACGTCTTCGAGTACAAGATCAGATGAAAAACAGTACAATCCATGGCGTTCATCATAATCATCAGTACTACTCTAATAACAATTTCCCTAAATTAACTCCTGTTTCATCATTTACCGGCGGTGGTAGTGCTAGTGCTGATCCTGGAAATTATAGTAATTCTATTTTGAACTCTTCACCAGTACTTCAGTTCCCCAAATTGTGTGCAGTGAGCCCTAATGATTTTTTTATGCAACAAAAAGTTGTGAATACTGGGTTTATTGGATCTAGTAGTACAAATCAGTTGATGATTTCTTCTCATGATCATCATCAGTTTCAATCTCAGATGAATCTCTACGGATTTGCAACTTCTAAGCCCAGTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U323246" ref_strand="+" ref_description="SGN-U323246        Tomato 200607 #1 [6 ESTs aligned]">
      <seq>tttatcctaaattcgcgatatttttaatccaaagacatttttgtctttctatccccctatctccttcctccctgcaaatgcctatttagttctgtatatattttacacattgggcatgggcaaatggcaaaagtagcgaaaaatcgaggaaggaataggttttttaatagttgttataagcccctacatttcaacgatgatatgcctattacaactaaacgaggccatttgtataattcaacagatatatcgaatttgaagagagtaaaatcacaagaaaaattggattcaatattgggaaaagatttgaccaaaaattttcgaccaaatcgaaaggaaaatgcctttggaaggaatttttctcatgcactcaaaaatgtgttttctgatacatcattggggaagaaaggccagaggaaagagcataagtattcatttggatcatgtaaaaagttatcaacaaaatttgagaaaatatttcattctacaaaagaaaaaaagttttcttcatcaaaggatttaccaaaaattacaagtagaatgtccacaagtgcaagcatggatgatttttccttattcactacttctacatcctctttattttctttttccttcttctcttcatcttgtcatcacagagaacgcaatttccatcttttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="36184" stop="34471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35884" g_stop="35485" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35484" i_stop="35038" i_length="447">
            <donor d_prob="0.409" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35037" g_stop="34771" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="662" r_length="263" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-U323246" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35884" e_stop="35485"/>
          <exon e_start="35037" e_stop="34771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCCTAAATTCGCGATATTTTTAGTCCAAAGACATTTTTGTCTTTCTATCCCCCCTATCTCCTTCCTCCCTGCAAATGCCTATTTAGTTCTGTAAATATTTTACACATTGGGCATGGGCAAATGGCAAAATTAGCGAAAAATCGAGGAAGGAATAGATTTTTTAATAGTTGTTATAAGCCTCTACATTTCAACGATGATATATCTAATACAAATAAACGAGGTCATTTGTATAATTCAACAGATATATCTAATTTGAAGAGAGTAAAATCACAAGAAAAATTGGATTCAATGTTGGGAAAAGATTTGACCAAAAATTTTCGACCAAATCGAAAGGAGAATGCCTTTGGAAGGAATTTTTCTCATGCACTCAAAAATGTGTTTTTTGATACATCATTGGTAAGTTCAAGGGGAAAAAATTTGACTAGAAAATGAAGATATTTATTGAGTATGTCTGCATTTATAATATTTCTTGCATCTCTCTTTTATTAAAAAAAAAAAGAAAAGCAAAGTGACGTATAGTTCAAAACTCGATAAGTAATGATCTGAGAAATTTCTTGGGATAGTGGTGCATAGTTCGAATTTGATGAATAATATGTCTCTGGCTTCGTTTAATCATACATCCACCGTTCTTACTTAAATAGTGGCGCACGGTTTAACATTTTTATCTTTGATATGATCTGAACCTGTGATATGCGCCTAATCACACATTATGAATAACTAGTTGTGTGAGATTCGTGTTGGTATCCGACATTGGGCCTAGTGCTGGTTCATAGCACTAGACCAAATTAAAAGATTTATTATTTGTCACTTGATGAAACTTACAAAATTGAATTGTTTTTGCAGGGGAAGAAAGGCCAGAGGAAAGAGCATAAGTATTCATTTGGATCATGTAAAAAGTTATCAACAAAATTTGAGAAAATATTTCATTCTACAAAAGAAAAAAAGTTTTCTTCATCAAAGGATTTACCAAAAATTACAAGTAGAATGTCCACAAGTGCAAGCATGGATGATTTTTCCTTATTCACTACTTCTACATCCTCTTTATTTTCTTCTTCTTCTTCTTCTCGTTCGTCTTGTTCATCACAGAGAACGCAATTTTCATCTTTTCAC</genome_strand>
        <mrna_strand>TTTATCCTAAATTCGCGATATTTTTAATCCAAAGACATTTTTGTCTTTCTAT-CCCCCTATCTCCTTCCTCCCTGCAAATGCCTATTTAGTTCTGTATATATTTTACACATTGGGCATGGGCAAATGGCAAAAGTAGCGAAAAATCGAGGAAGGAATAGGTTTTTTAATAGTTGTTATAAGCCCCTACATTTCAACGATGATATGCCTATTACAACTAAACGAGGCCATTTGTATAATTCAACAGATATATCGAATTTGAAGAGAGTAAAATCACAAGAAAAATTGGATTCAATATTGGGAAAAGATTTGACCAAAAATTTTCGACCAAATCGAAAGGAAAATGCCTTTGGAAGGAATTTTTCTCATGCACTCAAAAATGTGTTTTCTGATACATCATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAGAAAGGCCAGAGGAAAGAGCATAAGTATTCATTTGGATCATGTAAAAAGTTATCAACAAAATTTGAGAAAATATTTCATTCTACAAAAGAAAAAAAGTTTTCTTCATCAAAGGATTTACCAAAAATTACAAGTAGAATGTCCACAAGTGCAAGCATGGATGATTTTTCCTTATTCACTACTTCTACATCCTCTTTATTTTCTT-TT-TCCTTCTTCTC-TTCATCTTG-TCATCACAGAGAACGCAATTTCCATCTTTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U337806" ref_strand="+" ref_description="SGN-U337806        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tatcctaaattcgcgatattgtgaatccaaagacatttttgtggtgatatccggctatctacttgctccctgcaaatgcctatggaattctgtatatattggacacattgggcatgggcaaatggcaaaagtagcgaaaaatcgaggaaggaataggttttttaatagttgctataagcccctacatttcaacgatgatatgcctattacaactaaacgaggccatttgtataattcaacagatatatcgaatttgaagagagtaaaatcacaagaaaaattggattcaatattgggaaaagatttgaccaaaaattttcgaccaaatcgaaaggaaaatgcctttggaaggaatttttctcatgcactcaaaaatgtgttttctgatacatcattggggaagaaaggccagaggaaagagcataagtattcatttggatcatgtaaaaagttatcaacaaaatttgagaaaatatttcattctacaaaagaaaaaaagttttcttcatcaaaggatttaccaaaaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="36182" stop="34605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35882" g_stop="35485" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35484" i_stop="35038" i_length="447">
            <donor d_prob="0.409" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35037" g_stop="34905" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="530" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-U337806" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35882" e_stop="35485"/>
          <exon e_start="35037" e_stop="34905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCTAAATTCGCGATATTTTTAGTCCAAAGACATTTTTGTCTTTCTATCCCCCCTATCTCCTTCCTCCCTGCAAATGCCTATTTAGTTCTGTAAATATTTTACACATTGGGCATGGGCAAATGGCAAAATTAGCGAAAAATCGAGGAAGGAATAGATTTTTTAATAGTTGTTATAAGCCTCTACATTTCAACGATGATATATCTAATACAAATAAACGAGGTCATTTGTATAATTCAACAGATATATCTAATTTGAAGAGAGTAAAATCACAAGAAAAATTGGATTCAATGTTGGGAAAAGATTTGACCAAAAATTTTCGACCAAATCGAAAGGAGAATGCCTTTGGAAGGAATTTTTCTCATGCACTCAAAAATGTGTTTTTTGATACATCATTGGTAAGTTCAAGGGGAAAAAATTTGACTAGAAAATGAAGATATTTATTGAGTATGTCTGCATTTATAATATTTCTTGCATCTCTCTTTTATTAAAAAAAAAAAGAAAAGCAAAGTGACGTATAGTTCAAAACTCGATAAGTAATGATCTGAGAAATTTCTTGGGATAGTGGTGCATAGTTCGAATTTGATGAATAATATGTCTCTGGCTTCGTTTAATCATACATCCACCGTTCTTACTTAAATAGTGGCGCACGGTTTAACATTTTTATCTTTGATATGATCTGAACCTGTGATATGCGCCTAATCACACATTATGAATAACTAGTTGTGTGAGATTCGTGTTGGTATCCGACATTGGGCCTAGTGCTGGTTCATAGCACTAGACCAAATTAAAAGATTTATTATTTGTCACTTGATGAAACTTACAAAATTGAATTGTTTTTGCAGGGGAAGAAAGGCCAGAGGAAAGAGCATAAGTATTCATTTGGATCATGTAAAAAGTTATCAACAAAATTTGAGAAAATATTTCATTCTACAAAAGAAAAAAAGTTTTCTTCATCAAAGGATTTACCAAAAATTA</genome_strand>
        <mrna_strand>TATCCTAAATTCGCGATATTGTGAATCCAAAGACATTTTTGTGGTGATAT-CCGGCTATCTACTTGCTCCCTGCAAATGCCTATGGAATTCTGTATATATTGGACACATTGGGCATGGGCAAATGGCAAAAGTAGCGAAAAATCGAGGAAGGAATAGGTTTTTTAATAGTTGCTATAAGCCCCTACATTTCAACGATGATATGCCTATTACAACTAAACGAGGCCATTTGTATAATTCAACAGATATATCGAATTTGAAGAGAGTAAAATCACAAGAAAAATTGGATTCAATATTGGGAAAAGATTTGACCAAAAATTTTCGACCAAATCGAAAGGAAAATGCCTTTGGAAGGAATTTTTCTCATGCACTCAAAAATGTGTTTTCTGATACATCATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAGAAAGGCCAGAGGAAAGAGCATAAGTATTCATTTGGATCATGTAAAAAGTTATCAACAAAATTTGAGAAAATATTTCATTCTACAAAAGAAAAAAAGTTTTCTTCATCAAAGGATTTACCAAAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326778" ref_strand="+" ref_description="SGN-U326778        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | ubiquitin-specific protease 14, putative (UBP14), similar to ubiquitin-specific protease 14 GI:11993473 (Arabidopsis thaliana) | chr3:7203007-7208346 REVERSE | Aliases: None(evalue: 1e-63, score=239) genbank/nr: gi|22331218|ref|NP_566666.2| ubiquitin-specific protease 14 (UBP14), putative [Arabidopsis thaliana] gi|22655294|gb|AAM98237.1| ubiquitin-specific protease 14 (UBP14), putative [Arabidopsis thaliana](evalue: 6e-62, score=239)">
      <seq>aattagggagaaaggcggttgctgaatatttgagcaaagaatccatacgaatatatatacactattttttcctcttcttcttgtagctctcggcgattgtaattgaagaatccatttgcgaagaaaacgaagaaccctatggagcttctccgatcaaaccttgctcgtgttcggattccagagccgactactcgtatctacaagcacgagtgctgcatttctttcgatactccgaaatccgatggcgggctgtttgttgatatgagtacttttcttgcatttggaagggattgtgttgattggaactatgagaagactgggaaccctgtttatttgcatataaagcagacaaagaaggcagatgctgaagatagaccgtccaaaaaacccactctcttggctataggtttagacggagggtttgataacagtgaaccccagtacgaagaattctatgaaatagttataatgcctgataatgtcactcttcctttcccatcggtggaattgcctgagaaggttagattggctgttgatgctattttactagctgaaggtgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="36968" stop="39300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37268" g_stop="37501" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37502" i_stop="38388" i_length="887">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38389" g_stop="38560" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="406" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38561" i_stop="38750" i_length="190">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38751" g_stop="38863" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="519" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38864" i_stop="38957" i_length="94">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38958" g_stop="39000" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="562" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-U326778" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37268" e_stop="37501"/>
          <exon e_start="38389" e_stop="38560"/>
          <exon e_start="38751" e_stop="38863"/>
          <exon e_start="38958" e_stop="39000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAGGGAGAAAGGCGGTTGCTGAATATTTGAGCAAAGAATCCATACGAATATATATACACTATTTTTTCCTCTTCTTCTTGTAGCTCTCGGCGATTGTAATTGAAGAATCCATTTGCGAAGAAAACGAAGAACCCTATGGAGCTTCTCCGATCAAACCTTGCTCGTGTTCGGATTCCAGAGCCGACTACTCGTATCTACAAGCACGAGTGCTGCATTTCTTTCGATACTCCGGTAAATCTTCAATTCCAATTTGGAATGTTCATTTTGCTGTAATTTTACTTCATTATTCGTTTTTTTCGTTGTTCCTAGTTGTTACGATTGTAGATGTTATTCGGACTCGTCCAGCATAGTTTGGAAGGCTGTAATTCTCGTCCTTGTGCCATTTTTGGTAAGAGAAGTTGTATGTTAATTCGGTAGGGTTTAGGAGCTTATACTAGGGTTTATAGTTCAATCCGATTTGGTTAGAAACTTCCAGTTGATTAGTAGTATTGCGAGTGATTTTTTTTTTGTAAAGCTGCTATGAAGTTGTAGAATTAAAATTTTAATTTCTAAAAACCCCTATTGATATTTTGACCAAAAGCAAAACCTTTCTTTGAACATTTAGTCATTCTACTTATACAGGGAATAAGTGATGATTCGAACGGAGTCAAAATAGATACAGAAGATCCATATACAGTCCATGACTTGTACTAAATATTAGTCATCCTCACTCGATTTTCAAGCTTGTAATTCGTAGCCTTGTGCAATTTTTAGCAAGTTCGGTGCATATTAAGAGTTTATTCTTGGTTTATGAGTCATGGTTCACTCCGATTGAAGTTGAGCCTGCAGTTGATTAGTACTGATGAGTGATTTGTCTATCAACTTGTAGAACAGACTCAAAATATAGTGGAGTAGATATAGAGAATTCCCATGGCCAACCCCAGCTAGTTTAGGATTGACATATTAGTAGTAGTTGTAGTGGTATAGCCCCAATGAAATGTCATGCTGATGCTGGCTTATCAGTTTGATCTTTTCCATCTGTGTTCACTAATGCTCATTTAGGAAATATATCTTCACTTATGAAGCAGTTGCTATTGATTTAGCTACAATTTGTAACATTTTCTTTGCTGTTTTTCCAGAAATCCGATGGCGGGCTGTTTGTTGATATGAGTACTTTTCTTGCATTTGGAAGGGATTGTGTTGATTGGAACTATGAGAAGACTGGGAACCCAGTTTATTTGCATATAAAGCAGACAAAGAAGGCAGATGCTGAAGATAGACCGTCCAAAAAACCCACTCTCTTGGCTATAGGTACTTAAATATTTCACATATAGCTAAAAGCTTCCAAAACTAGGCCGAAAAAGAAAAAAAGAAGAATAAAGAGCCATATAAGTTCGCATTTTCTGATATTTATCATTTGACAGAGTTAAGCCTACCCTTACTAATTTGAGGTTGAAGCTTAGTTGATAGATTGACTTGGATTATGCCTTTCTCCTTCTAGGTTTAGACGGAGGGTTTGATAACAGTGAACCCCAGTACGAAGAATTCTATGAAATAGTTATATTGCCTGATAATGTCACTCTTCCTTTCCCATCGGTGGAATTGCCTGAGAAGGTAAACTACTCTTTGAAGATCCTTTCACAGGTTCCCTTTGTTTAGAGTAAAATGAAACATTTAAATATTGCTTATGTTCATCACGACTTTCCAGGTTAGATTGGCTGTTGATGCTATTTTACTAGCTGAAGGTGCTG</genome_strand>
        <mrna_strand>AATTAGGGAGAAAGGCGGTTGCTGAATATTTGAGCAAAGAATCCATACGAATATATATACACTATTTTTTCCTCTTCTTCTTGTAGCTCTCGGCGATTGTAATTGAAGAATCCATTTGCGAAGAAAACGAAGAACCCTATGGAGCTTCTCCGATCAAACCTTGCTCGTGTTCGGATTCCAGAGCCGACTACTCGTATCTACAAGCACGAGTGCTGCATTTCTTTCGATACTCCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCCGATGGCGGGCTGTTTGTTGATATGAGTACTTTTCTTGCATTTGGAAGGGATTGTGTTGATTGGAACTATGAGAAGACTGGGAACCCTGTTTATTTGCATATAAAGCAGACAAAGAAGGCAGATGCTGAAGATAGACCGTCCAAAAAACCCACTCTCTTGGCTATAG..............................................................................................................................................................................................GTTTAGACGGAGGGTTTGATAACAGTGAACCCCAGTACGAAGAATTCTATGAAATAGTTATAATGCCTGATAATGTCACTCTTCCTTTCCCATCGGTGGAATTGCCTGAGAAG..............................................................................................GTTAGATTGGCTGTTGATGCTATTTTACTAGCTGAAGGTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U330693" ref_strand="+" ref_description="SGN-U330693        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | ubiquitin-specific protease 14, putative (UBP14), similar to ubiquitin-specific protease 14 GI:11993473 (Arabidopsis thaliana) | chr3:7203007-7208346 REVERSE | Aliases: None(evalue: 1e-46, score=181) genbank/nr: gi|22331218|ref|NP_566666.2| ubiquitin-specific protease 14 (UBP14), putative [Arabidopsis thaliana] gi|22655294|gb|AAM98237.1| ubiquitin-specific protease 14 (UBP14), putative [Arabidopsis thaliana](evalue: 1e-44, score=181)">
      <seq>agactgaaatgacgactgctgagagagaactagaccaaaattttaactttgattggaaccggattcaagagactggtgaggacgttgaaccactttttggacctggttacactggattagtcaatcttggtaacagttgctacttggctgctacaatgcaggttatgttctcaacgcgttcattttgttcaagatactactttgatcaacgtctgaaagaagcttttactacggctcctgctgatccgactggagaccttaacatgcagctaacaaagctggctcatggtttgctttctggtaaatattcgggtcctgttctggacaaggataatactgctaatgctgtaagctcacaaaaacaagaggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="40558" stop="42467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40858" g_stop="40993" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40994" i_stop="41100" i_length="107">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41101" g_stop="41157" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="193" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41158" i_stop="41272" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41273" g_stop="41350" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="271" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41351" i_stop="41993" i_length="643">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41994" g_stop="42048" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="326" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42049" i_stop="42135" i_length="87">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.864" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42136" g_stop="42168" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="359" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-U330693" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40858" e_stop="40993"/>
          <exon e_start="41101" e_stop="41157"/>
          <exon e_start="41273" e_stop="41350"/>
          <exon e_start="41994" e_stop="42048"/>
          <exon e_start="42136" e_stop="42168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTGAAATGACGACTGCTGAGAGAGAACTAGACCAAAATTTTAACTTTGATTGGAACCGGATTCAAGAGACTGGTGAGGACGTTGAACCACTTTTTGGACCTGGTTACACTGGATTAGTCAATCTTGGTAACAGGTGTGGGTAACTTTTTATTACTGCTGCTTAGGCAACATGGCATTTCATATCTTCATTTCTTGAAAGAAACATATGAAATTCTCTGGTCTCATATATTGTTCTTGCAGTTGCTACTTGGCTGCTACAATGCAGGTTATGTTCTCAACGCGTTCATTTTGTTCAAGGTAAGATAATTATACTTGTGATAAATGTATTTGATGCTTATGAACTGATGAAAGTTAAAATGGTTTTAGATTTCCTTCTTTTTACATCTTACCATCTGATGTGTATCCTTGTCAGATACTACTTTGATCAACGTCTGAAAGAAGCTTTTACTACGGCTCCTGCTGATCCGACTGTAGACCTTAACATGCAGCTGTGAGTAACTTGGATCTGTTCATTTACCAGTTTAGCTTTTTCATTACTTATTTATCAACTAGTTATTCCATTAGTTATGCTCTCTGCTGCAGCAAAAATACTCTGTTTAACAAAACATGGCATGTTTGATACTGAGTAGTGCTTAAGTCTCTCATTGTTACAGGAAGCTAGTCACTGCACACACTTAATGCATTTTGAAACTGAATTTTTCTGTTAGGGTTTTCTAATAATTAATTTTGAGAAAATATTCATATTCAGCAAATCATATTTTGCTTGAATGAATGATACCAACCCCCAACCTTCTTTCCCTTTTATTCCTTTTTTTTAAAGGCCTTTTTTATCATGAGGGGTATCTAGCAGGTTTTATTCAATACCCTGTAATTGCAATTCAGGCTGTACGATACTTATTATGTTAAGAGTCCTACAGTTAACTGAATTTTCTGGTCCAAATACATACCAATCCCTAGTTGATGACCTGTATAGCTGACACGACGAGGCATAGTTGTTTAGTATAAACAGTGATCCCTGTAGAGTCTTTCCATGCTTCATTTTTCAAATTTGATAGATATGTCATAATAGTAGCTATTGTTATGAATTTTGCTTGCGCGCTCAACTTGCTGACGGGTGACCTATATTTTGGCAGAACAAAGCTGGCTCATGGTTTGCTTTCTGGTAAATATTCGGGTCCTGTTCTGGAGGTATGTGTGAAAGCATTTTGTTCCTTTTTGTTTCATCTGCTATTTTTTTTTCCAATCGTGGCTTATAGTTAATTATTGGTTATTCAGAAGGATAATACTGCTAATGCTGTAAGCTCACAG</genome_strand>
        <mrna_strand>AGACTGAAATGACGACTGCTGAGAGAGAACTAGACCAAAATTTTAACTTTGATTGGAACCGGATTCAAGAGACTGGTGAGGACGTTGAACCACTTTTTGGACCTGGTTACACTGGATTAGTCAATCTTGGTAACAG...........................................................................................................TTGCTACTTGGCTGCTACAATGCAGGTTATGTTCTCAACGCGTTCATTTTGTTCAAG...................................................................................................................ATACTACTTTGATCAACGTCTGAAAGAAGCTTTTACTACGGCTCCTGCTGATCCGACTGGAGACCTTAACATGCAGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAAGCTGGCTCATGGTTTGCTTTCTGGTAAATATTCGGGTCCTGTTCTGGAC.......................................................................................AAGGATAATACTGCTAATGCTGTAAGCTCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U325263" ref_strand="+" ref_description="SGN-U325263        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | ubiquitin-specific protease 14, putative (UBP14), similar to ubiquitin-specific protease 14 GI:11993473 (Arabidopsis thaliana) | chr3:7203007-7208346 REVERSE | Aliases: None(evalue: 2e-151, score=531) genbank/nr: gi|11993473|gb|AAG42755.1| ubiquitin-specific protease 14 [Arabidopsis thaliana](evalue: 1e-149, score=532)">
      <seq>gctagtcaccctgaattttcaacaatgagacaacaggatgcgttagagttcttcctgcattttattgatcaagttgaacggataaactctgggacacctaattttgatccatcaaggagcttcaagtttggtattgaagaacgcctccaatgttcctcgggcaaagtcacttacaacagaaggaatgattatattctgtctcttaatattcctttggagagggctataaataaaaaagagctagcagaatttcaaaatttgaaggctgagagagctgctggaggaaaagaactgtctgctgatgaaattgttcgccctagagtatcattgaaggattgcctagattgcttttcagctccggaggaggtgcatgatttctacagcacagctttaacggctaggactacagcaatcaaaactgcaggtttgacttcttttccagattatctggttttgcacatgcggaaatttgttatggaggaaggttgggtgccaaagaagcttgatgtctacatagatgtccctgaaaccattgacataagtagcatgcgaagtaatggtattcaaccaggagaagagctgttgcctgacagtgctgcaggggatggtgagcagtcaataaagcttctggctgacgatgatattgttgcacaacttgtttcaatgggatttaatctactccattgtcagaaggctgctatcaatacttccaacagtggagtagaggcagcaatggattggttacttaatcatatgaatgatccagatattgatgctcctatatcagaaaacgtgcaaaatcctgatattgatcaatctaaagttgatacgctggtttcatttggtttcgaagagaaacttgcccataaggccctgaaggcatcgggaggtgatgttgaaaaagctactgaatggatattcagcagccctagtgccagtactgcagcagacatggatgttactaccagtagtggagctgcagttgataccttgatgcctgatggaggaggaaaatacaggctcctgggattcgtgagccacataggcacatctacccactgtggccattatgtcgctcatattaacaaagatggccggtgggtgattttcaacgatgaaaaagttggggtctcaaaaaacccccctatggatatgggatacctctacttttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="42226" stop="47325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42526" g_stop="42561" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42562" i_stop="42964" i_length="403">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42965" g_stop="43163" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="235" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43164" i_stop="43299" i_length="136">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43300" g_stop="43357" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="293" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43358" i_stop="43425" i_length="68">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43426" g_stop="43548" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="416" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43549" i_stop="43832" i_length="284">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43833" g_stop="43921" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="505" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43922" i_stop="44008" i_length="87">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44009" g_stop="44098" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="595" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44099" i_stop="45197" i_length="1099">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45198" g_stop="45368" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="766" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="45369" i_stop="45458" i_length="90">
            <donor d_prob="0.480" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="45459" g_stop="45577" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="767" r_stop="885" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="45578" i_stop="45685" i_length="108">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="45686" g_stop="45812" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="886" r_stop="1012" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="45813" i_stop="46863" i_length="1051">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="46864" g_stop="47025" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1013" r_stop="1174" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-U325263" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1174</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42526" e_stop="42561"/>
          <exon e_start="42965" e_stop="43163"/>
          <exon e_start="43300" e_stop="43357"/>
          <exon e_start="43426" e_stop="43548"/>
          <exon e_start="43833" e_stop="43921"/>
          <exon e_start="44009" e_stop="44098"/>
          <exon e_start="45198" e_stop="45368"/>
          <exon e_start="45459" e_stop="45577"/>
          <exon e_start="45686" e_stop="45812"/>
          <exon e_start="46864" e_stop="47025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAGTCACCCTGAATTTTCAACAATGAGACAACAGGTACACTGACATTCTTGGAATCTTCTTCTCCCAGACAATTGCTTTTAATTTAAGATTATCAGATTCAAGCATAATAATGCTTCCCTCTACTAAAAGAACTCCAGCAATCTCTTGGTACTGTTTCACGCCTTAAAAATCCATTTGAGCTCTTTGTCCATCCAGCTGATGCAGTGTTTGGCTAAGTTGATACATACATCTACACTTGGATTTTCTTTTCAATATAGTCTGCCACTGATGTGTCAGAACTGTTGTGCATTGCTCAAAATAGTTTCATGGTCCCTTCACTTTATTGCCTTTAAACCCCAGTCGGTTATTTTTCTGTCTTGCGATCACGTTCATTGTTTGTTACCATTGCCATGGCTATTGTTATTCTTGTGGTTTATTGATAACAACGTATGTCTAGGATGCGTTAGAGTTCTTCCTGCATTTTATTGATCAAGTTGAACGGATAAACTCTGGGACACCTAATTTTGATCCATCAAGGAGCTTCAAGTTTGGTATTGAAGAACGCCTCCAATGTTCCTCGGGCAAAGTCACTTACAACAGAAGGAATGATTATATTCTGTCTCTTAATATTCCTTTGGAGAGGGCTATAAATAAAAGTGAGTTTTCTCTCTTATGTAATGCTTTTTTCTTGCCATTTTCTTATATATTGTTCATTGCAAAATTTCAGCTGAGCTTGATATTAATGAGTAATACTGCCTCCATTGTGATATTTTGTTTTGTATGAAATTCCAGAAGAGCTAGCAGAATTTCAAAATTTGAAGGCTGAGAGAGCTGCAGGAGGAAAAGAACTGTGAGTTTCAAGTGACCAATACATGCTTGCCTTTCATGTACTTCAGCTAAATGTATGGGTTTTTGCAGGTCTGCTGATGAAATTGTTCGCCCTAGAGTATCATTGAAGGATTGCCTAGATTGCTTTTCAGCTCCTGAGGAGGTGCATGATTTCTACAGCACAGCTTTAACAGCTAGGACTACAGCAATCAAGTAATCTTGTTATTCTCCTCTATGAAGTTATTTCTTCAATTTTTCTCTTGTTCTGCTTGTGGCATCTCAAATTTAGTTTACCTGCACCTCGTCTGTTGTTTTAGTAGGGCCTAATATCTCGTCTTTTTGGCTTCCATACTTCTTACACAGTTGGCTGTAGAAATTATAGATGTCTTGTCTGTCAGCAGTGGATGGCTAGTGTCTGTCAGCTTTATCTATTTGCTCGACTGTCGTACTTGATGAGGCCACTTCTTTTTATCTTATTTAATTTTGTTTGTAAATAGAACTGCAGGTTTGACTTCTTTTCCAGATTATCTGGTTTTGCACATGCGGAAATTTGTTATGGAGGAAGGTTGGGTGCCAAAGAAGCTCGGTATGCTACTTTTTCTTCATCGATGTAATTCTAATGTGTAGTTTATCTTGTTATATTGCTAATCTTTTTCTCTGATGGTCCTTCTAGATGTCTACATAGATGTCCCTGAAACCATTGACATAAGTAGCATGCGAAGTAATGGTATTCAACCAGGAGAAGAGCTGTTGCCTGACAGTGGTACGAATCTCCTTGTCTTTTACTAAATTCATAGTGATCTTGTAGATAATGTCTTGTCTTCCATTTCAGCCCAAATAGTACTCTATTGCAAAGAATAATATAAGCATGTCTATCTGGTCTTGTCGCAGAAGTTGTTTTCTGCCTTGCGTCCCTTTTCTAGCTACTCAATTTTTTTCAAGAATATTTGATTGTCACTCTTATATTTGAATAATGAGGACATGAGTGTGGCAAAAACCTTTTTGGAAATAAAAAATAGTTGTGTGGAATTCTTCTTGTAAAAAATTTTTGTCGTTGTTTTGGGTGGGGAGGACGTACCATATGAGCTGGGGAGACTTTTATGAGTCTCATTCTCCTTGGGTGTTTGAAGTTTGTGACTCTTTTCTTTTGTCTGTATTCACACATTGCTAAGTGGTCTATTTCTGAATCATAAGATTTGACCTTTAGCTTGCATTAGTTTCTCTCAACCAATCTGTTAATTGCTTAATCAGGTTGTGTCTGTTTAGATAAAGTTGAACATTCATTGGAACTTAGCTTATTTAGTTCGTCCGGTGATACATGTAAAAAATGATTTGGCATCTAATTTATTTTTTATTTTGACTCTGGTTTTGTTATGCGGTCAACTTGAAGACTTTCAATTATGTTGTAGTGTTTTGGAAGTAATATTTCTTCTGTTCTAGTTTGTCTATTGAATGGGAGTAGCAAAAGCCGACAGGATAGAGTTCTGTATGCATAGAGCCATATTTAACCGACAGTATATACCTCAGAAATTCGTAGTTCATGAAATAGATTCCAGTTGCTATTTAATCTAATTCCTGCTCAGGGAATAGTTTCTTTTAGTAAGTGAGTAATTGGTGTTGCTTCTCACTCTCCAGCTAATGTTTGTTCCAAATCTGGGGTATCTGAAAGCTAAGGATGTTGTCTTAACAGCTTTTTAGTGGGTGTGTGATCAATGATGATCAATGATCATCAGTTAATTAACATCAGAAGTTTTAGCAATAGGTGCTACTTGTATGCCAAGTTCCTTTAGGGTTTGAAGCTTTTGGGTCATGTTTTGCAAGTACTAAATTGCTGCTATGTTGGATTACTTGTCCATGAACAGCTGCAGGGGATGGTGAGCAGTCAATAAAGCTTCTGGCTGACGATGATATTGTTGCACAACTTGTTTCAATGGGATTTAATCTACTTCATTGTCAGAAGGCTGCTATCAATACTTCCAACAGTGGAGTAGAGGCAGCAATGGATTGGTTACTTAATCATATGAATGATCCAGGTAGTTTTAATGTTTGCTTTCAAGCAGGGTTTACTCATATTTCTCGCCATAACTAGATACAGGGTAATTTGATGCATATTTTTTTTCCAGATATTGATGCTCCTATATCAGAAAACGTGCAAAATCCTGATATTGATCAATCTAAAGTTGATACGCTGGTTTCATTTGGTTTCGAAGAGAAACTTGCCCATAAGGCCCTGAAGGCATCGGTAAATATCTCACTTTTACTGGCGTTTACTATTTCACTGTGGGGTTCCTTGCTATTCACTGCCAATAGCATAATGTTTGTTCATTCCTTGTTTCTATCTGCTCATCAGGGAGGTGATGTTGAAAAAGCTACTGAATGGATATTCAGCAGCCCTAGTGCCAGTACTGCAGCAGACATGGATGTTACTACCAGTAGTGGAGCTGCAGTTGATACCTTGATGCCTGATGGAGGAGGAAGTAAGTTCCCTATCCTCTGGTTCTACTAGTTGTACAGCTTTGTTGCTTTTATTTGGAACTGATGATATATTCTTACCAAATCTGTGAGGCAGTGGACATTAGCCTTCTCTTAAGTGATGTAGGTGAGGAGCCTCTGTAGTGTACTGCTACAATATGTTTTTCTTTAGGCTCTCCATATTTCTGATTCTGCTTAATCAGCTTTGTTAAGGATTTTATATATAGAATGGTATGCTAGTTCTACTAAAGTTTTTCCGTTGAGCTTCCAATATTGGCTCACCTTCTCATGGGCTTAATCATCTTGGTAATGGATTTTAGAAGTGGAATGCTGTATTTACTGTCTAATTATTTTTTCCGTCATTCACACTCGAGTTTAGTTTCCTTCCGCTCTCCTTTCAAAATTCTTTACCACCACTTGTGTGGTTAGAAGTATGTTTATTTTTCTTCTCCTTTTTGTGATTTGTTAGCTGTTTCCCCTCTCTCCTCTAAGGGGCAACAATGGTTTCCAACTATTGCACCTCCAACTTACGGTAGATCATAACTCCATACCATGGTTTCTTACTTTCTGGTGGTTGGAAATGGTCAATATAGATGCCCCACGTTCTTTTCTTGATCTAAACTTCTAATTTCTTATCCGGTTGCTTTCACTAAAACCATTTTACTAATTTCTAATCCAGTTGCTTTCACTAAAATCATTTATCTTTTGAGGGCTGCAAATTAGTTTCAAAGCCAAATTATGGGTCCTGTTCTCTGGTTTTGCAATTTTGATATTTGAACTCTTTTTTAGAGAAAATCCATCAGTATTTGTTTGAATCACTTCATATATTCGGAACGTTTAAGAGCAAGGACTATTGGAACTTGACCTAACTAATCTAAAGTTTTAGGATGATAGAAAGTTCCCTACATCCCTTTAAAAGCGTTTTAGTACTTCAATTTTATTATGAATTTCATTCAATGCATCACAGTCCTTGATAGTGAGATTTGGGTTTACTTCTATATTCTTTTATGCCCACTTGAGTCTTGACCCAAGTGTATCTTTTTGGATAATTAACAGAATACAGGCTCCTGGGATTCGTGAGCCACATAGGCACATCTACCCACTGTGGCCATTATGTCGCTCATATTAACAAAGATGGCCGGTGGGTGATTTTCAACGATGAAAAAGTTGGGGTCTCAAAAAACCCCCCTATGGATATGGGATACCTCTACTTTTTTG</genome_strand>
        <mrna_strand>GCTAGTCACCCTGAATTTTCAACAATGAGACAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................GATGCGTTAGAGTTCTTCCTGCATTTTATTGATCAAGTTGAACGGATAAACTCTGGGACACCTAATTTTGATCCATCAAGGAGCTTCAAGTTTGGTATTGAAGAACGCCTCCAATGTTCCTCGGGCAAAGTCACTTACAACAGAAGGAATGATTATATTCTGTCTCTTAATATTCCTTTGGAGAGGGCTATAAATAAAA........................................................................................................................................AAGAGCTAGCAGAATTTCAAAATTTGAAGGCTGAGAGAGCTGCTGGAGGAAAAGAACT....................................................................GTCTGCTGATGAAATTGTTCGCCCTAGAGTATCATTGAAGGATTGCCTAGATTGCTTTTCAGCTCCGGAGGAGGTGCATGATTTCTACAGCACAGCTTTAACGGCTAGGACTACAGCAATCAA............................................................................................................................................................................................................................................................................................AACTGCAGGTTTGACTTCTTTTCCAGATTATCTGGTTTTGCACATGCGGAAATTTGTTATGGAGGAAGGTTGGGTGCCAAAGAAGCTTG.......................................................................................ATGTCTACATAGATGTCCCTGAAACCATTGACATAAGTAGCATGCGAAGTAATGGTATTCAACCAGGAGAAGAGCTGTTGCCTGACAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAGGGGATGGTGAGCAGTCAATAAAGCTTCTGGCTGACGATGATATTGTTGCACAACTTGTTTCAATGGGATTTAATCTACTCCATTGTCAGAAGGCTGCTATCAATACTTCCAACAGTGGAGTAGAGGCAGCAATGGATTGGTTACTTAATCATATGAATGATCCAG..........................................................................................ATATTGATGCTCCTATATCAGAAAACGTGCAAAATCCTGATATTGATCAATCTAAAGTTGATACGCTGGTTTCATTTGGTTTCGAAGAGAAACTTGCCCATAAGGCCCTGAAGGCATCG............................................................................................................GGAGGTGATGTTGAAAAAGCTACTGAATGGATATTCAGCAGCCCTAGTGCCAGTACTGCAGCAGACATGGATGTTACTACCAGTAGTGGAGCTGCAGTTGATACCTTGATGCCTGATGGAGGAGGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACAGGCTCCTGGGATTCGTGAGCCACATAGGCACATCTACCCACTGTGGCCATTATGTCGCTCATATTAACAAAGATGGCCGGTGGGTGATTTTCAACGATGAAAAAGTTGGGGTCTCAAAAAACCCCCCTATGGATATGGGATACCTCTACTTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U344304" ref_strand="+" ref_description="SGN-U344304        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | wound-responsive family protein, similar to wound induced protein (GI:19320) (Lycopersicon esculentum) | chr4:6374730-6375206 FORWARD | Aliases: T9A4.6(evalue: 2e-12, score=69.7) genbank/nr: gi|19320|emb|CAA42537.1| wound induced protein [Lycopersicon esculentum] (evalue: 3e-11, score=72.4)">
      <seq>ttaattctaccaaaaaaaaaaatgaatgcagcagcagcaaagggatcggcatggatcgtagcagcaagtattggagcagtagaagcattaaaagatcaaggatttgccagatggaattacgctttaagatcgattcatcactatgccaaatctaatttaattgcttctagtaatacctcggctcggagattctcgacggcttcggcgccggcggcgtcttctccggcagtcgtctccggtgagaagctgaggaaaacggaagagacgttgagtaaagttatagatctgaactgttggggtccaagcactgtcagattttagttttatatacttaaatttggtatatgatctattaatgaaaagagtaatagagatcaattttgaaaatttactcttgtttatatttgaatatttatggaacaaaacacattttatatacaattatcactcaattataggaatggaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="50098" stop="51166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50398" g_stop="50866" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-U344304" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50398" e_stop="50866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTCTACCAAAAAAAAAAATGAATGCAGCAGCAGCAAAGGGATCGGCATGGATCGTAGCAGCAAGTATTGGAGCAGTAGAAGCATTAAAAGATCAAGGATTTGCCAGATGGAATTACGCTTTAAGATCGATTCATCACTATGCCAAATCTAATTTAATTGCTTCTAGTAATACCTCGGCTCGGAGATTCTCGACGGCTTCGGCGCCGGCGGCGTCTTCTCCGGCAGTCGTCTCCGGTGAGAAGCTGAGGAAAACGGAAGAGACGTTGAGTAAAGTTATAGATCTGAACTGTTGGGGTCCAAGCACTGTCAGATTTTAGTTTTATATACTTAAATTTGTTATATGATCTATTAATGAAAAGAGTAATAGAGATCAATTTTGAAAATTTACTCTTGTTTATATTTGAATATTTATGGAACAAAACACATTTTATATACAATTATCACTCAATTATAGTAATGTAATAT</genome_strand>
        <mrna_strand>TTAATTCTACCAAAAAAAAAAATGAATGCAGCAGCAGCAAAGGGATCGGCATGGATCGTAGCAGCAAGTATTGGAGCAGTAGAAGCATTAAAAGATCAAGGATTTGCCAGATGGAATTACGCTTTAAGATCGATTCATCACTATGCCAAATCTAATTTAATTGCTTCTAGTAATACCTCGGCTCGGAGATTCTCGACGGCTTCGGCGCCGGCGGCGTCTTCTCCGGCAGTCGTCTCCGGTGAGAAGCTGAGGAAAACGGAAGAGACGTTGAGTAAAGTTATAGATCTGAACTGTTGGGGTCCAAGCACTGTCAGATTTTAGTTTTATATACTTAAATTTGGTATATGATCTATTAATGAAAAGAGTAATAGAGATCAATTTTGAAAATTTACTCTTGTTTATATTTGAATATTTATGGAACAAAACACATTTTATATACAATTATCACTCAATTATAGGAATGGAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U323545" ref_strand="+" ref_description="SGN-U323545        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | vesicle-associated membrane family protein / VAMP family protein, similar to VAP27 GI:6688926 (Nicotiana plumbaginifolia) | chr5:21975440-21977827 FORWARD | Aliases: MJP23.9, MJP23_9(evalue: 3e-48, score=188) genbank/nr: gi|18423592|ref|NP_568804.1| VAMP (vesicle-associated membrane protein)-associated protein family [Arabidopsis thaliana](evalue: 2e-46, score=188)">
      <seq>aggaaagagtttcctcactaagggacaattacaagctgccctaatttttatcaccggaaaattgcaacttgtcgtcggaaaactcgactagattccggccaaaactccgtcctatggcaatcgccgaccaccacaagtcacataactcagacggaaagctctggaagctttgtcctctatggcaatcaggaactacgtcttcttcttcgtcgtctacacaaaatcttcactctcagaatcacagtcaccaaaacggcgtcggatctaacagctctcgtgcttctacgtctgttagctccgttgctagatcactgcttccggctagacgtaggcttcggctcgatccagctaacagtctctacttcccttatgaaccgggaaagcaggtgaagagtgctgtaaagattaagaacactagcaaatcttatgttgcatttaagtttcaaacgactgcaccaaagagctgctacatgcgacctcccggaggcattctcgaacccggtgaaagtgttattgccactgtcttcaagtttgtggagcaccctgagaacaacgaaaagcctgtggaccaaaagagcaaagttaagttcaagatcataagcttgaaggtgaaagaaggtgtagattacgtacctgagttgtttgaagaacaaaaggatcacgtgactattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="55327" stop="58624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55625" g_stop="55993" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55994" i_stop="56136" i_length="143">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56137" g_stop="56207" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="440" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56208" i_stop="56865" i_length="658">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56866" g_stop="56947" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="522" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56948" i_stop="57045" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57046" g_stop="57164" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="641" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57165" i_stop="58291" i_length="1127">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58292" g_stop="58324" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="674" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-U323545" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55625" e_stop="55993"/>
          <exon e_start="56137" e_stop="56207"/>
          <exon e_start="56866" e_stop="56947"/>
          <exon e_start="57046" e_stop="57164"/>
          <exon e_start="58292" e_stop="58324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAAGAGTTTCCTCACTAAGGGACAATTACAAGCTGCCCTAATTTTTATCACCGGAAAATTGCAACTTGTCGTCGGAAAACTCGACTAGATTCCGGCCAAAACTCCGTCCTATGGCAATCGCCGACCACCACAAGTCACATAACTCAGACGGAAAGCTCTGGAAGCTTTGTCCTCTATGGCAATCAGGAACTACGTCTTCTTCTTCGTCGTCTACACAAAATCTTCACTCTCAGAATCACAGTCACCAAAACGGCGTCGGATCTAACAGCTCTCGTGCTTCTACGTCTGTTAGCTCCGTTGCTAGATCACTGCTTCCGGCTAGACGTAGGCTTCGGCTCGATCCAGCTAACAGTCTCTACTTCCCTTGTACGTCCGTTTACCTCGCCGTTGACTAAATTGACTTTATTTTAGTCAAAATTTTCCGATGTTTTTAGGTCTTTCTAATTTTTCGTGTTGAAAACTGGAGGAAAATGTGCTCTGTTTTTACCTGTTAATTTTTTTTTTTCCAGATGAACCGGGAAAGCAGGTGAAGAGTGCTGTAAAGATTAAGAACACTAGCAAATCTTATGTTGCATTTAAGGTAATCTTTCCGTGTTAATTTGGCTTTGATTTCTCAAATGGTCAGTCATTTAATAATTATGATCTTAGAAAAGTCACTTTTTAGTTGATGACAATTGGAGCTTTTTGAGCTAGTAACTTTTAGTTGAGTAACTATTTGAGAAATCAACTATGACAATTTGTGCTAGTAAGGTCTGTAGTTTTCAGAAATCTATCCAAGTGTTTGCGTCTATCAGAAGAGAAAGGCATTGAGTAGGGGGTAACTGTCATTTATTTCCTAATGATTTTACCATTTCTGGATCTTCTGGATGGTTCATGATTTGAATCACTAGCATCTACTTTCAAATTGTTCCCATTTACTCTTTGTTGTAGCTAATTACCCAATCCCTACACAAATGAGTGTGTTTTATGCTTTTAGGGTCGAAAAGACTAAATTTAAAGAAGTTAGCTAATGAAAGCAAAATGAAGTTCATTGAGGTTTTAAGATTCTTCAAGTAAAAATACTTGCACTGGCGTTTCTGTTAATAATATAACGACCTCTTCTAGTTTGAGATTGAAACATAGAGCATAGTAGTAGTAGTTGTTGTGATATGGAGGTTTTGGTTATAAATGTCGCACAAAATAATTGGTGGTGTAAGTTCCTGATATTTCCTTTCCTGATTCTTCTTTTTGCATTTTAGTTTCAAACGACTGCACCAAAGAGCTGCTACATGCGACCTCCCGGAGGCATTCTCGAACCCGGTGAAAGTGTTATTGCCACTGGTAATTGGTTTTCCTACATTTTGTTGTTTCCACTATTCCTATTCTTTTTTTAAATGAAAAATATCAACTTAGATTTTGATTGTGTGTCTAAATGGTAGTCTTCAAGTTTGTGGAGCACCCTGAGAACAACGAAAAGCCTGTGGACCAAAAGAGCAAAGTTAAGTTCAAGATCATAAGCTTGAAGGTGAAAGAAGGTGTAGATTACGTACCTGAGTTGGTGAGTAACTGAACTTCCTAGGTCTTCTAAAAGAGGCAACTTTTGTATTTGCAGCAATTTTTGACCAGAAAGGAAGTTTAGGGTATCATGCTTCTTCAGCTTTATACTTGTCATTTGAGCAACACATCAATTTTCTTTCTGATGATTTCATGCTCTTTAACAAAACATATTGAAGGGTTAAAGGTGTTGCTGACTTGTCAGGATTCCGGACAACTTTTTTTTTGGGTCCTTTTTTGTTCTGAAAGTCACGAGTTCATTATTTGTCTATTCAGGATAGACCCTGTCCTATCCACCTGAACATATTTATGAAAATCAGCTAGGATTATAATTTTTACTGCTTATATGAATAGAGCATTTTGTGATAAGACGTGGGTAAATGAGGGGCTCTATCATGGGTCAGGCATCATTTGAAATTACATCTTCTTTGCATGCTCCTGTCTGGATACCTTTGCTATGTGTGACATAGAAGAAGCACTTTCCAGTAAGCTTTGACTAAGAAAGTATATTTTAGCTGATTCTCGTCCTTTGTAAAGTAGCATCAAACATTAGATAAGTTGCTGTTGGCATGTTCAGAGAAAAGAACTATTGAATTTTACAGAGATGTGTTATATAAAAATCCACTTTACATGTGGAGGCTTCTGCTTTCATTCACAAACTGGATTTTATGACAAAATATTTTTCCGTATTGTATATATCAGTTGGAGTATCCAGTAAAAGTAGAGCATAGACTTTGAATAGAGGAAGCTGTCGAGATCAGGTGTCTTTTTACAATGTAGCCATGACCATTTGCTTTTACCTGCAACCTCCATGTTTGAAATGATCGTCTCTTTTTTTGTATCAAATCTAGGAGCATCAAGTGTCATACATAATCCATTTCATCTTGTCCTGTCTTCGACAAAGTCAGGATTACAAAAGACTCATTTCTTTCATCATCATCCTGTATTCCTTGGAGGGAGGTGTTGGTGTAAACATACAGAAAGTGATTGTCATTGTGAGCCTTGTGCCTCGGTTGTCATTGTGTGTGAAATCTGATGTGTAACTAAAGAATATAAGCCTATAGCGTGACTCAAAGTTTGTTGTCAATGAATCCAGTAGTGTTATAACCCTTTTTGTTCATGTGGATGCAGTTTGAAGAACAAAAGGATCACGTGACTATTGAA</genome_strand>
        <mrna_strand>AGGAAAGAGTTTCCTCACTAAGGGACAATTACAAGCTGCCCTAATTTTTATCACCGGAAAATTGCAACTTGTCGTCGGAAAACTCGACTAGATTCCGGCCAAAACTCCGTCCTATGGCAATCGCCGACCACCACAAGTCACATAACTCAGACGGAAAGCTCTGGAAGCTTTGTCCTCTATGGCAATCAGGAACTACGTCTTCTTCTTCGTCGTCTACACAAAATCTTCACTCTCAGAATCACAGTCACCAAAACGGCGTCGGATCTAACAGCTCTCGTGCTTCTACGTCTGTTAGCTCCGTTGCTAGATCACTGCTTCCGGCTAGACGTAGGCTTCGGCTCGATCCAGCTAACAGTCTCTACTTCCCTT...............................................................................................................................................ATGAACCGGGAAAGCAGGTGAAGAGTGCTGTAAAGATTAAGAACACTAGCAAATCTTATGTTGCATTTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAAACGACTGCACCAAAGAGCTGCTACATGCGACCTCCCGGAGGCATTCTCGAACCCGGTGAAAGTGTTATTGCCACTG..................................................................................................TCTTCAAGTTTGTGGAGCACCCTGAGAACAACGAAAAGCCTGTGGACCAAAAGAGCAAAGTTAAGTTCAAGATCATAAGCTTGAAGGTGAAAGAAGGTGTAGATTACGTACCTGAGTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAGAACAAAAGGATCACGTGACTATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U330586" ref_strand="+" ref_description="SGN-U330586        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | vesicle-associated membrane family protein / VAMP family protein, similar to VAP27 GI:6688926 (Nicotiana plumbaginifolia) | chr5:21975440-21977827 FORWARD | Aliases: MJP23.9, MJP23_9(evalue: 3e-30, score=127) genbank/nr: gi|51964688|ref|XP_507128.1| PREDICTED OJ1368_G08.30 gene product [Oryza sativa (japonica cultivar-group)] >gi|50941005|ref|XP_480030.1| 27k vesicle-associated membrane protein-associated protein-like [Oryza sativa (japonica cultivar-group)] >gi|45736132|dbj|BAD13178.1| 27k vesicle-associated membrane protein-associated protein-like [Oryza sativa (japonica cultivar-group)] >gi|42761338|dbj|BAD11591.1| 27k vesicle-associated membrane protein-associated protein-like [Oryza sativa (japonica cultivar-group)] (evalue: 7e-29, score=128)">
      <seq>acgtgactattgaacgtatcctacgggtggtgttcttggacccagaacgaccttctccagtgctggataaactaaagcgtcagttggctgaagctgaggcagcattagaatctcgcaagaaacctccagttgaaactggacctaaagttgtaggagaaggtctagtaatagatgaatggaaggaacgaagggagaagtatctcgctcggcagcaggttgaggctgttgattcagtgtaaagcaactagtggattttaattcaagttccttcttttgctataattgaaatgtcaagccacatccatccattttctgctttaattctttcgaaggatggtggaaaacggacagtgtggtccgtcttgtaaagaaagaataatcagtgggaggtttagtttcttcttcatggagtaaaagcttgttatgtaattgctttggttgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="58011" stop="59227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58311" g_stop="58369" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58370" i_stop="58452" i_length="83">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58453" g_stop="58572" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="179" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58573" i_stop="58663" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.727" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58664" g_stop="58924" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="440" r_length="261" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="443" polyA_stop="454"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-U330586" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58311" e_stop="58369"/>
          <exon e_start="58453" e_stop="58572"/>
          <exon e_start="58664" e_stop="58924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTGACTATTGAACGTATCCTACGGGTGGTGTTCTTGGACCCAGAACGACCTTCTCCAGTAAGAATTAAACATGTTACTGTTTATCTACTTGTTCATTTACTCTGAATTCATTCTCCAACGAAATATCTTGATTGATTAAGGTGCTGGATAAACTAAAGCGTCAGTTGGCTGAAGCTGAGGCAGCATTAGAATCTCGCAAGAAACCTCCAGTTGAAACTGGACCTAAAGTTGTAGGAGAAGGTCTAGTAATAGATGAATGGGTAAGGCTATCTATCTCTGCATATAAAAGCATGTATGTTTCCAAGTTTGATTCCTCTTAACACTGTCTATCTGCTTGCTATTGTTCAACAGAAGGAACGAAGGGAGAAGTATCTCGCTCGGCAGCAGGTTGAGGCTGTTGATTCAGTGTAAAGCAACTAGTGGATTTTAATTCAAGTTCCTTCTTTTGCTATAATTGAAATGTCAAGCCACATCCATCCATTTTCTGCTTTAATTCTTTCGAAGGATGGTGGAAAACGGACAGTGTGGTCCGTCTTGTAAAGAAAGAATAATCAGTGGGAGGTTTAGTTTCTTCTTCATGGAGTAAAAGCTTGTTATGTAATTGCTTTGGTT</genome_strand>
        <mrna_strand>ACGTGACTATTGAACGTATCCTACGGGTGGTGTTCTTGGACCCAGAACGACCTTCTCCA...................................................................................GTGCTGGATAAACTAAAGCGTCAGTTGGCTGAAGCTGAGGCAGCATTAGAATCTCGCAAGAAACCTCCAGTTGAAACTGGACCTAAAGTTGTAGGAGAAGGTCTAGTAATAGATGAATGG...........................................................................................AAGGAACGAAGGGAGAAGTATCTCGCTCGGCAGCAGGTTGAGGCTGTTGATTCAGTGTAAAGCAACTAGTGGATTTTAATTCAAGTTCCTTCTTTTGCTATAATTGAAATGTCAAGCCACATCCATCCATTTTCTGCTTTAATTCTTTCGAAGGATGGTGGAAAACGGACAGTGTGGTCCGTCTTGTAAAGAAAGAATAATCAGTGGGAGGTTTAGTTTCTTCTTCATGGAGTAAAAGCTTGTTATGTAATTGCTTTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U318603" ref_strand="+" ref_description="SGN-U318603        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:13690827-13692800 REVERSE | Aliases: F27G19.7, M4I22.160, M4I22_160(evalue: 5e-64, score=241) genbank/nr: gi|15234089|ref|NP_194465.1| membrane lipo protein lipid attachment site-containing expressed protein [Arabidopsis thaliana] gi|7460217|pir||T05759 hypothetical protein M4I22.160 - Arabidopsis thaliana gi|3269296|emb|CAA19729.1| putative protein [Arabidopsis thaliana] gi|7269588|emb|CAB79590.1| putative protein [Arabidopsis thaliana] gi|12597469|gb|AAG60063.1| unknown protein [Arabidopsis thaliana] gi|21281147|gb|AAM44923.1| membrane lipoprotein lipid attachment site-containing unknown protein [Arabidopsis thaliana](evalue: 4e-62, score=241)">
      <seq>ggacggttaaacaaaaagcgtatgtggagaccttaaatctagataccatgtttacgcctcaaattgtggttcagggaagagctcaatgtgttgggaatgaacaagatgcggttttctcttgtatcaaatctgcccccagatttgctgctccttccttccaggcaacattcgagaggccaacaccagagtcattgcaagtatctctattaggatctctaaggagtaaggtggacaatgatggtgccaacgtgatgattgctctgtacgaaggtggtctggtgactgatatcgctgcaggagagaacaaaggaaaaatgcttgcgaatgactatgttgtcaggaggctggaaaagctttgctatgtaaaggatattactgcaaagaagacaatctcaggaactgtcaatttctctctttgggatggcttcaatagcagcaaatgtggcgtagcgctctttgtggaatctggctctcatcaaatatgtggatcacaaaactttaaattgccagaaaatctctgaattcttcgatgatatatcactgatgtaaactcttgatttgctggctataggttgaattgcttatagtgcacgtttctgattaaaatcaaatctgcaaaacattctatataccagcttgttccttgtgtatataggttgtgtgagactgttcatgttagattcttcatccttttttcttcttactgttcattctttttcttttttataaacggttggcatagtgattctttccttctactatgtataattggggattattagaaaatgcggctacagatatattagtgtaaatgcttttcccaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="61923" stop="59333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61623" g_stop="61463" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="60296" i_length="1167">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60295" g_stop="59627" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="830" r_length="669" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-U318603" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61623" e_stop="61463"/>
          <exon e_start="60295" e_stop="59627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACGGTTAAACAAAAAGCGTATGTGGAGACCTTAAATCTAGATACCATGTTTACGCCTCAAATTGTGGTTCAGGGAAGAGCTCAATGTGTTGGGAATGAACAAGATGCGGTTTTCTCTTGTATCAAATCTGCCCCCAGATTTGCTGCTCCTTCCTTCCAGGTTTGTTATTGTTGCAAATTGATCATAATAATACCCTATTTGATTGAATTTATGGTTACAATTATCTCTCTGTTTGATGAATTAATTGAAATATATGCATGATTGAAGCAATTGTGATTATTCAAAGGTCTCGTGTTCAAACTTTGTAAATGAAAAAATCTGGTATGGAGTGAACGTTCCCCTGTTTCATAGCCTTATGCATCGTGGGTTCAAAATAGTCTAGGTATGAAGCAGATAACTGACACTGAGTGTGAAACCAAAAAGAAGAGTATTCATGAGTAGCAGAAGGACTTAATTTGAATGGTGTTTGGTCTTCGAACGGGGTAGGGGATGTGGAAATGGGTGAGGGGATTACAAAGCAGGAGATCGAGCCATCACCAACAAGTTGAAAGTTCAGGGAGCCAACCAACTGAACTACTGAGATTTCCCCTGGATTTACTTGAGCTTATTATCTTTAAATGCAATTTAAACCAATTTGTCTTGGTTATTCCTTTTGATCAAAATGGGTACTGAGAATTCATATAGTCGATTTCAGTTAATGTGGGATTGATTGATTTGATTCCTCGTGATCACTTATGGTTGCACCAAGTTGCAATATACTGATCACTCGAAAAGAGAAGCTAAAATGAGCATTTTGGTTCTCTTAAAATGCAAATCATGTTTTACGTTACCAATTTCTGTTGGTTATTCCATCCATCCAAACAATCAAAATGGATACAGAGAATTGGTACGGCAGATTCCAATTCATGTGTGATTGATCAATTCATCATGATCTTGCACCAGGTTACAATGTACTGGAAATAATTAGCTAATATGTGGAATTCGAGATTTGATCATTTGGATCTGAAAAAGGTTCATGATATACCATTTCATACCATAATCAAGAAGATGTTAGCTATATTTTGAACTCAGCACATTATTCTGATTCTTTACTTCTTGAATTGGTAAAATTCAGTTCAACACTCTTCTGTTTTTGTTAGGAACTTGGGATTAGTTTTCTTTCTTAAACTGAACTCTGTGTACTTTGTTGATTATGAGTCGAGAATTCAGTATTTGGGAAAACTTAAGTTGTTTTCTCAATTATGTATCAAAAATACTGGAGTCAGTACGAACTAATGGTTGTATCTGGTCTATGCATATTGCTAATGCTGTGAAAAAACATTACAGGCAACATTCGAGAGGCCAACACCAGAGTCATTGCAAGTATCTCTATTAGGATCTCTAAGGAGTAAGGTGGACAATGATGGTGCCAACGTGATGATTGCTCTGTACGAAGGTGGTCTGGTGACTGATATCGCTGCAGGAGAGAACAAAGGAAAAATGCTTGCGAATGACTATGTTGTCAGGAGGCTGGAAAAGCTTTGCTATGTAAAGGATATTACTGCAAAGAAGACAATCTCAGGAACTGTCAATTTCTCTCTTTGGGATGGCTTCAATAGCAGCAAATGTGGCGTAGCGCTCTTTGTGGAATCTGGCTCTCATCAAATATGTGGATCACAAAACTTTAAATTGCCAGAAAATCTCTGAATTCTTCGATGATATATCACTGATGTAAACTCTTGATTTGCTGGCTATAGGTTGAATTGCTTATAGTGCACGTTTCTGATTAAAATCAAATCTGCAAAACATTCTATATACCAGCTTGTTCCTTGTGTATATAGGTTGTGTGAGACTGTTCATGTTAGATTCTTCATCCTTTTTTCTTCTTACTGTTCATTCTTTTTCTTTTTTATAAACGGTTGGCATAGTGATTCTTTCCTTCTACTATGTATAATTGGGGATTATTAGAAAATGCGGCTACAGATATATTAGTGTAAATGCTTTTCCCAATTATGT</genome_strand>
        <mrna_strand>GGACGGTTAAACAAAAAGCGTATGTGGAGACCTTAAATCTAGATACCATGTTTACGCCTCAAATTGTGGTTCAGGGAAGAGCTCAATGTGTTGGGAATGAACAAGATGCGGTTTTCTCTTGTATCAAATCTGCCCCCAGATTTGCTGCTCCTTCCTTCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATTCGAGAGGCCAACACCAGAGTCATTGCAAGTATCTCTATTAGGATCTCTAAGGAGTAAGGTGGACAATGATGGTGCCAACGTGATGATTGCTCTGTACGAAGGTGGTCTGGTGACTGATATCGCTGCAGGAGAGAACAAAGGAAAAATGCTTGCGAATGACTATGTTGTCAGGAGGCTGGAAAAGCTTTGCTATGTAAAGGATATTACTGCAAAGAAGACAATCTCAGGAACTGTCAATTTCTCTCTTTGGGATGGCTTCAATAGCAGCAAATGTGGCGTAGCGCTCTTTGTGGAATCTGGCTCTCATCAAATATGTGGATCACAAAACTTTAAATTGCCAGAAAATCTCTGAATTCTTCGATGATATATCACTGATGTAAACTCTTGATTTGCTGGCTATAGGTTGAATTGCTTATAGTGCACGTTTCTGATTAAAATCAAATCTGCAAAACATTCTATATACCAGCTTGTTCCTTGTGTATATAGGTTGTGTGAGACTGTTCATGTTAGATTCTTCATCCTTTTTTCTTCTTACTGTTCATTCTTTTTCTTTTTTATAAACGGTTGGCATAGTGATTCTTTCCTTCTACTATGTATAATTGGGGATTATTAGAAAATGCGGCTACAGATATATTAGTGTAAATGCTTTTCCCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U336573" ref_strand="+" ref_description="SGN-U336573        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:13690827-13692800 REVERSE | Aliases: F27G19.7, M4I22.160, M4I22_160(evalue: 7e-44, score=174) genbank/nr: gi|15234089|ref|NP_194465.1| membrane lipo protein lipid attachment site-containing expressed protein [Arabidopsis thaliana] gi|7460217|pir||T05759 hypothetical protein M4I22.160 - Arabidopsis thaliana gi|3269296|emb|CAA19729.1| putative protein [Arabidopsis thaliana] gi|7269588|emb|CAB79590.1| putative protein [Arabidopsis thaliana] gi|12597469|gb|AAG60063.1| unknown protein [Arabidopsis thaliana] gi|21281147|gb|AAM44923.1| membrane lipoprotein lipid attachment site-containing unknown protein [Arabidopsis thaliana](evalue: 5e-42, score=174)">
      <seq>ttaaacaaaaagcgtatgtggagaccttaaatctagataccatgtttacgcctcaaattgtggttcagggaagagctcaatgtgttgggaatgaacaagatgcggttttctcttgtatcaaatctgcccccagatttgctgctccttccttccaggcaacattcgagaggccaacaccagagtcattgcaagtatctctattaggatctctaaggagtaaggtgtactatgatggtgccaacgtgatgattgctctgtacgaaggtggtctgccccccgatatcgctgcaggaccccccccaggaaaaatgcttgccactgactatgttgtcaggaggctggaaaagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="61917" stop="59801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61617" g_stop="61463" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="60296" i_length="1167">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60295" g_stop="60101" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="350" r_length="195" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-U336573" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61617" e_stop="61463"/>
          <exon e_start="60295" e_stop="60101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACAAAAAGCGTATGTGGAGACCTTAAATCTAGATACCATGTTTACGCCTCAAATTGTGGTTCAGGGAAGAGCTCAATGTGTTGGGAATGAACAAGATGCGGTTTTCTCTTGTATCAAATCTGCCCCCAGATTTGCTGCTCCTTCCTTCCAGGTTTGTTATTGTTGCAAATTGATCATAATAATACCCTATTTGATTGAATTTATGGTTACAATTATCTCTCTGTTTGATGAATTAATTGAAATATATGCATGATTGAAGCAATTGTGATTATTCAAAGGTCTCGTGTTCAAACTTTGTAAATGAAAAAATCTGGTATGGAGTGAACGTTCCCCTGTTTCATAGCCTTATGCATCGTGGGTTCAAAATAGTCTAGGTATGAAGCAGATAACTGACACTGAGTGTGAAACCAAAAAGAAGAGTATTCATGAGTAGCAGAAGGACTTAATTTGAATGGTGTTTGGTCTTCGAACGGGGTAGGGGATGTGGAAATGGGTGAGGGGATTACAAAGCAGGAGATCGAGCCATCACCAACAAGTTGAAAGTTCAGGGAGCCAACCAACTGAACTACTGAGATTTCCCCTGGATTTACTTGAGCTTATTATCTTTAAATGCAATTTAAACCAATTTGTCTTGGTTATTCCTTTTGATCAAAATGGGTACTGAGAATTCATATAGTCGATTTCAGTTAATGTGGGATTGATTGATTTGATTCCTCGTGATCACTTATGGTTGCACCAAGTTGCAATATACTGATCACTCGAAAAGAGAAGCTAAAATGAGCATTTTGGTTCTCTTAAAATGCAAATCATGTTTTACGTTACCAATTTCTGTTGGTTATTCCATCCATCCAAACAATCAAAATGGATACAGAGAATTGGTACGGCAGATTCCAATTCATGTGTGATTGATCAATTCATCATGATCTTGCACCAGGTTACAATGTACTGGAAATAATTAGCTAATATGTGGAATTCGAGATTTGATCATTTGGATCTGAAAAAGGTTCATGATATACCATTTCATACCATAATCAAGAAGATGTTAGCTATATTTTGAACTCAGCACATTATTCTGATTCTTTACTTCTTGAATTGGTAAAATTCAGTTCAACACTCTTCTGTTTTTGTTAGGAACTTGGGATTAGTTTTCTTTCTTAAACTGAACTCTGTGTACTTTGTTGATTATGAGTCGAGAATTCAGTATTTGGGAAAACTTAAGTTGTTTTCTCAATTATGTATCAAAAATACTGGAGTCAGTACGAACTAATGGTTGTATCTGGTCTATGCATATTGCTAATGCTGTGAAAAAACATTACAGGCAACATTCGAGAGGCCAACACCAGAGTCATTGCAAGTATCTCTATTAGGATCTCTAAGGAGTAAGGTGGACAATGATGGTGCCAACGTGATGATTGCTCTGTACGAAGGTGGTCTGGTGACTGATATCGCTGCAGGAGAGAACAAAGGAAAAATGCTTGCGAATGACTATGTTGTCAGGAGGCTGGAAAAGCTT</genome_strand>
        <mrna_strand>TTAAACAAAAAGCGTATGTGGAGACCTTAAATCTAGATACCATGTTTACGCCTCAAATTGTGGTTCAGGGAAGAGCTCAATGTGTTGGGAATGAACAAGATGCGGTTTTCTCTTGTATCAAATCTGCCCCCAGATTTGCTGCTCCTTCCTTCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATTCGAGAGGCCAACACCAGAGTCATTGCAAGTATCTCTATTAGGATCTCTAAGGAGTAAGGTGTACTATGATGGTGCCAACGTGATGATTGCTCTGTACGAAGGTGGTCTGCCCCCCGATATCGCTGCAGGACCCCCCCCAGGAAAAATGCTTGCCACTGACTATGTTGTCAGGAGGCTGGAAAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U318604" ref_strand="+" ref_description="SGN-U318604        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:13690827-13692800 REVERSE | Aliases: F27G19.7, M4I22.160, M4I22_160(evalue: 6e-65, score=244) genbank/nr: gi|15234089|ref|NP_194465.1| membrane lipo protein lipid attachment site-containing expressed protein [Arabidopsis thaliana] gi|7460217|pir||T05759 hypothetical protein M4I22.160 - Arabidopsis thaliana gi|3269296|emb|CAA19729.1| putative protein [Arabidopsis thaliana] gi|7269588|emb|CAB79590.1| putative protein [Arabidopsis thaliana] gi|12597469|gb|AAG60063.1| unknown protein [Arabidopsis thaliana] gi|21281147|gb|AAM44923.1| membrane lipoprotein lipid attachment site-containing unknown protein [Arabidopsis thaliana](evalue: 4e-63, score=244)">
      <seq>acctttttctctccaccatatcttcataatttttactattctaagctttctattttcatttctcatatatatattttttccttccgtttgaaaaccccataaaaacataggttaatttctgataaaatatattttcagtacaattttctccattaaagctttaacgaatcaccaggtttgagacgactcgtcgggaaatggggcgccgtctcttcacctgcttcggcaaaggcggttcttctcattcttcttcaaaagatcccggctcgaataacaaggacagtgcgacggcggatttgacggcggaggagcaaaaacggtgcgggccggtggtggtggagttattctcatcgcaaggctgcgccacctcacctgaagcggagctgttgttttcgaggattgggagaggcgattttaacctagaaatgccggtgattttgttggcttatcatgtggattattgggattatatgggttggaaggatccgtttgggtcgagtttatggacggttaaacaaaaagcgtatgtggagaccttaaatctagataccatgtttacgcctcaaattgtggttcagggaagagctcaatgtgttgggaatgaacaagatgcggttttctcttgtatcaaatctgcccccagatttgctgctccttccttccaggcaacattcgagaggccaacaccaaagtcattgcaagtatctctattaggatctctaaggagtaaggtggacaatgatggtgccaacgtgatgattgctctgtacaaagagtgtctggtgactgatatcgctgcaggagaagacaaaggaaaaatgcttgcgaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="62427" stop="59829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62127" g_stop="61463" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="60296" i_length="1167">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60295" g_stop="60129" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="832" r_length="167" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-U318604" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62127" e_stop="61463"/>
          <exon e_start="60295" e_stop="60129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTTTTCTCTCCACCATATCTTCATAATTTTTACTATTCTAAGCTTTCTATTTTCATTTCTCATATATATATTTTTTCCTTCCGTTTGAAAACCCCATAAAAACATAGGTTAATTTCTGATAAAATATATTTTCAGTACAATTTTCTCCATTAAAGCTTTAACGAATCACCAGGTTTGAGACGACTCGTCGGGAAATGGGGCGCCGTCTCTTCACCTGCTTCGGCAAAGGCGGTTCTTCTCATTCTTCTTCAAAAGATCCCGGCTCGAATAACAAGGACAGTGCGACGGCGGATTTGACGGCGGAGGAGCAAAAACGGTGCGGGCCGGTGGTGGTGGAGTTATTCTCATCGCAAGGCTGCGCCACCTCACCTGAAGCGGAGCTGTTGTTTTCGAGGATTGGGAGAGGCGATTTTAACCTAGAAATGCCGGTGATTTTGTTGGCTTATCATGTGGATTATTGGGATTATATGGGTTGGAAGGATCCGTTTGGGTCGAGTTTATGGACGGTTAAACAAAAAGCGTATGTGGAGACCTTAAATCTAGATACCATGTTTACGCCTCAAATTGTGGTTCAGGGAAGAGCTCAATGTGTTGGGAATGAACAAGATGCGGTTTTCTCTTGTATCAAATCTGCCCCCAGATTTGCTGCTCCTTCCTTCCAGGTTTGTTATTGTTGCAAATTGATCATAATAATACCCTATTTGATTGAATTTATGGTTACAATTATCTCTCTGTTTGATGAATTAATTGAAATATATGCATGATTGAAGCAATTGTGATTATTCAAAGGTCTCGTGTTCAAACTTTGTAAATGAAAAAATCTGGTATGGAGTGAACGTTCCCCTGTTTCATAGCCTTATGCATCGTGGGTTCAAAATAGTCTAGGTATGAAGCAGATAACTGACACTGAGTGTGAAACCAAAAAGAAGAGTATTCATGAGTAGCAGAAGGACTTAATTTGAATGGTGTTTGGTCTTCGAACGGGGTAGGGGATGTGGAAATGGGTGAGGGGATTACAAAGCAGGAGATCGAGCCATCACCAACAAGTTGAAAGTTCAGGGAGCCAACCAACTGAACTACTGAGATTTCCCCTGGATTTACTTGAGCTTATTATCTTTAAATGCAATTTAAACCAATTTGTCTTGGTTATTCCTTTTGATCAAAATGGGTACTGAGAATTCATATAGTCGATTTCAGTTAATGTGGGATTGATTGATTTGATTCCTCGTGATCACTTATGGTTGCACCAAGTTGCAATATACTGATCACTCGAAAAGAGAAGCTAAAATGAGCATTTTGGTTCTCTTAAAATGCAAATCATGTTTTACGTTACCAATTTCTGTTGGTTATTCCATCCATCCAAACAATCAAAATGGATACAGAGAATTGGTACGGCAGATTCCAATTCATGTGTGATTGATCAATTCATCATGATCTTGCACCAGGTTACAATGTACTGGAAATAATTAGCTAATATGTGGAATTCGAGATTTGATCATTTGGATCTGAAAAAGGTTCATGATATACCATTTCATACCATAATCAAGAAGATGTTAGCTATATTTTGAACTCAGCACATTATTCTGATTCTTTACTTCTTGAATTGGTAAAATTCAGTTCAACACTCTTCTGTTTTTGTTAGGAACTTGGGATTAGTTTTCTTTCTTAAACTGAACTCTGTGTACTTTGTTGATTATGAGTCGAGAATTCAGTATTTGGGAAAACTTAAGTTGTTTTCTCAATTATGTATCAAAAATACTGGAGTCAGTACGAACTAATGGTTGTATCTGGTCTATGCATATTGCTAATGCTGTGAAAAAACATTACAGGCAACATTCGAGAGGCCAACACCAGAGTCATTGCAAGTATCTCTATTAGGATCTCTAAGGAGTAAGGTGGACAATGATGGTGCCAACGTGATGATTGCTCTGTACGAAGGTGGTCTGGTGACTGATATCGCTGCAGGAGAGAACAAAGGAAAAATGCTTGCGAATGA</genome_strand>
        <mrna_strand>ACCTTTTTCTCTCCACCATATCTTCATAATTTTTACTATTCTAAGCTTTCTATTTTCATTTCTCATATATATATTTTTTCCTTCCGTTTGAAAACCCCATAAAAACATAGGTTAATTTCTGATAAAATATATTTTCAGTACAATTTTCTCCATTAAAGCTTTAACGAATCACCAGGTTTGAGACGACTCGTCGGGAAATGGGGCGCCGTCTCTTCACCTGCTTCGGCAAAGGCGGTTCTTCTCATTCTTCTTCAAAAGATCCCGGCTCGAATAACAAGGACAGTGCGACGGCGGATTTGACGGCGGAGGAGCAAAAACGGTGCGGGCCGGTGGTGGTGGAGTTATTCTCATCGCAAGGCTGCGCCACCTCACCTGAAGCGGAGCTGTTGTTTTCGAGGATTGGGAGAGGCGATTTTAACCTAGAAATGCCGGTGATTTTGTTGGCTTATCATGTGGATTATTGGGATTATATGGGTTGGAAGGATCCGTTTGGGTCGAGTTTATGGACGGTTAAACAAAAAGCGTATGTGGAGACCTTAAATCTAGATACCATGTTTACGCCTCAAATTGTGGTTCAGGGAAGAGCTCAATGTGTTGGGAATGAACAAGATGCGGTTTTCTCTTGTATCAAATCTGCCCCCAGATTTGCTGCTCCTTCCTTCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATTCGAGAGGCCAACACCAAAGTCATTGCAAGTATCTCTATTAGGATCTCTAAGGAGTAAGGTGGACAATGATGGTGCCAACGTGATGATTGCTCTGTACAAAGAGTGTCTGGTGACTGATATCGCTGCAGGAGAAGACAAAGGAAAAATGCTTGCGAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U339010" ref_strand="+" ref_description="SGN-U339010        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | chlorophyll A-B binding protein / LHCII type III (LHCB3), identical to Lhcb3 protein (Arabidopsis thaliana) GI:4741952; contains Pfam profile PF00504: Chlorophyll A-B binding protein | chr5:22055555-22056794 FORWARD | Aliases: MDK4.9, MDK4_9(evalue: 1e-98, score=356) genbank/nr: gi|19277|emb|CAA42818.1| LHCII type III [Lycopersicon esculentum] >gi|115794|sp|P27489|CB23_LYCES Chlorophyll a-b binding protein 13, chloroplast precursor (LHCII type III CAB-13) (evalue: 5e-105, score=383)">
      <seq>actcaacacttctcattggttgatacaaaaatttcaaaactatttcacaccacaattttataaaacacaagaaccagaattgttaaatggggcccctccagatatttttccaacagttattctttatatataagtatataaattgtgcaagaaacttagtgaggtccaattaattaaaagagaaattaagcaatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66284" stop="68143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66584" g_stop="66901" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="480" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67843" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="675" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-U339010" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66584" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCAACACTTCTCATTGGTTGATACAAAAATTTCAAAACTATTTCACACCACAATTTTATAAAACACAAGAACCAGAATTGTTAAATGGGGCCCCTCCAGATATTTTTCCAACAGTTATTCTTTATATATAAGTATATAAATTGTGCAAGAAACTTAGTGAGGTCCAATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGC</genome_strand>
        <mrna_strand>ACTCAACACTTCTCATTGGTTGATACAAAAATTTCAAAACTATTTCACACCACAATTTTATAAAACACAAGAACCAGAATTGTTAAATGGGGCCCCTCCAGATATTTTTCCAACAGTTATTCTTTATATATAAGTATATAAATTGTGCAAGAAACTTAGTGAGGTCCAATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U314750" ref_strand="+" ref_description="SGN-U314750        Tomato 200607 #1 [109 ESTs aligned] arabidopsis/peptide: | Symbol: None | chlorophyll A-B binding protein / LHCII type III (LHCB3), identical to Lhcb3 protein (Arabidopsis thaliana) GI:4741952; contains Pfam profile PF00504: Chlorophyll A-B binding protein | chr5:22055555-22056794 FORWARD | Aliases: MDK4.9, MDK4_9(evalue: 3e-137, score=484) genbank/nr: gi|19277|emb|CAA42818.1| LHCII type III [Lycopersicon esculentum] >gi|115794|sp|P27489|CB23_LYCES Chlorophyll a-b binding protein 13, chloroplast precursor (LHCII type III CAB-13) (evalue: 1e-145, score=518)">
      <seq>gtgaggtccaattaattaaaagagaaattaagcaatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaatttttttcacatatcgactttgtagctttgtaccactcaatcattcattcataatgcaaatatttggcaaatgaaaaaaaattaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66442" stop="68551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66742" g_stop="66901" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="322" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68225" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="899" r_length="577" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="917" polyA_stop="943"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-U314750" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>899</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U314750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66742" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGGTCCAATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTG</genome_strand>
        <mrna_strand>GTGAGGTCCAATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U339013" ref_strand="+" ref_description="SGN-U339013        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | chlorophyll A-B binding protein / LHCII type III (LHCB3), identical to Lhcb3 protein (Arabidopsis thaliana) GI:4741952; contains Pfam profile PF00504: Chlorophyll A-B binding protein | chr5:22055555-22056794 FORWARD | Aliases: MDK4.9, MDK4_9(evalue: 8e-34, score=140) genbank/nr: gi|19277|emb|CAA42818.1| LHCII type III [Lycopersicon esculentum] >gi|115794|sp|P27489|CB23_LYCES Chlorophyll a-b binding protein 13, chloroplast precursor (LHCII type III CAB-13) (evalue: 9e-33, score=143)">
      <seq>taccttgggacaattttctgctcaaactccttcaaaccttgaccggagaattcccctggtgattaccggatgggaaacctggctgggtttattctggcttgatcccgaggcctttgctaagaacagagctcttgaggttatccatggggagatgggccatgcttggagctttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtctaatgggccttgtagaaggtttcagaataatgggcttcctggaagtggtgaaggcaacaatctctacccagggggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66757" stop="68308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67057" g_stop="67182" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.810"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="0.87"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67649" g_stop="68008" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="496" r_length="360" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-U339013" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67057" e_stop="67182"/>
          <exon e_start="67649" e_stop="68008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TA-CTTGGGACCATTTTCTGCTCAAACTCCTTCATA-CTTGACTGGAGAATT-CCCTGGTGATTA-CGGATGGGATA-CT-GCT-GGTTTA-TCT-GC-TGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCAT-GGGAGATGGGCCATGCTTGGAGC-TTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAAC</genome_strand>
        <mrna_strand>TACCTTGGGACAATTTTCTGCTCAAACTCCTTCAAACCTTGACCGGAGAATTCCCCTGGTGATTACCGGATGGGAAACCTGGCTGGGTTTATTCTGGCTTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGGAGATGGGCCATGCTTGGAGCTTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGT-CTAATGGGCCTTGTAGAAGGTTTCAGAA-TAATGGGCTTCCTGGAAGTGGTGAAGGCAACAATCTCTACCCAGGGGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U339004" ref_strand="-" ref_description="SGN-U339004        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | chlorophyll A-B binding protein / LHCII type III (LHCB3), identical to Lhcb3 protein (Arabidopsis thaliana) GI:4741952; contains Pfam profile PF00504: Chlorophyll A-B binding protein | chr5:22055555-22056794 FORWARD | Aliases: MDK4.9, MDK4_9(evalue: 1e-49, score=192) genbank/nr: gi|48375048|gb|AAT42191.1| chloroplast chlorophyll a-b binding protein [Nicotiana tabacum] (evalue: 6e-51, score=202)">
      <seq>aatgggccctgtaaaaggtttcaaaattaatgggcctcctggagttggtgaaggcaacaatctctacccaggtggacaggactttgaccccttgggcctagcaaatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaaactattgtccccggcaaaggcccccctgaaaatctattggatccccctgacaaccctggtgctaacaatgcatgggtttacgcaactaagtttggtcctggatcttaaatttttttcacaaaacgactttggaactttggaccccccaatcattcattcataatgcaaatatttggccaatggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="67558" stop="68537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67858" g_stop="68225" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="377" polyA_stop="407"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-U339004" ref_strand="-">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339004" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="67858" e_stop="68225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTG</genome_strand>
        <mrna_strand>AATGGGCCCTGTAAAAGGTTTCAAAATTAATGGGCCTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGGACTTTGACCCCTTGGGCCTAGCAAATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAACTATTGTCCCCGGCAAAGGCCCCCCTGAAAATCTATTGGATCCCCCTGACAACCCTGGTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGGTCCTGGATCTTAAATTTTTTTCACAAAACGACTTTGGAACTTTGGACCCCCCAATCATTCATTCATAATGCAAATATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U339012" ref_strand="+" ref_description="SGN-U339012        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | chlorophyll A-B binding protein / LHCII type III (LHCB3), identical to Lhcb3 protein (Arabidopsis thaliana) GI:4741952; contains Pfam profile PF00504: Chlorophyll A-B binding protein | chr5:22055555-22056794 FORWARD | Aliases: MDK4.9, MDK4_9(evalue: 7e-27, score=117) genbank/nr: gi|19277|emb|CAA42818.1| LHCII type III [Lycopersicon esculentum] >gi|115794|sp|P27489|CB23_LYCES Chlorophyll a-b binding protein 13, chloroplast precursor (LHCII type III CAB-13) (evalue: 6e-27, score=124)">
      <seq>tacccaacatcttttgcggaatttattgtcaaagacatcaagaacgggagattagggatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaatttttttcacatatcgactttgtagctttgtaccactcaatcattcattcataatgcaaatatttggcatatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="67665" stop="68537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67964" g_stop="68225" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="270" polyA_stop="280"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-U339012" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>262</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67964" e_stop="68225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTG</genome_strand>
        <mrna_strand>TACCCAACATCTTTTGCGGAATTTATTGTCAAAGACATCAAGAACGGGAGATTAGGGATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U341848" ref_strand="+" ref_description="SGN-U341848        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | myosin heavy chain, putative, similar to myosin (Arabidopsis thaliana) gi:499045:emb:CAA84065 | chr5:22055583-22062468 REVERSE | Aliases: MDK4.10, MDK4_10(evalue: 7e-40, score=160) genbank/nr: myosin(evalue: 5e-38, score=160)">
      <seq>taaagtgatgtctaaagcgaaggttgctcgtgaaggaagtgatgagcaactggtggctgtcgtgcagatacaatcagctattcgtggttggttggctagaaggggtcttcgcaaactgcgaaattcaaaaatgttaaatgtagacaaacgaagatcaggcagaaagacggaggtcaaggagttgcctcgagaaatcctaccatctgttgtagaagacctcgaaagacgggttgcaaaggccgaggcaacaactgaacaaaaggaaaaggaaaatgctgccctgaaggaacaagtaaaccaattcgagaccagatgcttaaaatatgaggtcaagatgaggtcaatggaggagatgtggcaaaagcaaatgacatcattgcaggttagtctagctgcagccaggaacagtcttaccgctgctgacactactggtcgacctggaaagcttgaagggtccccatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="70908" stop="68864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70608" g_stop="70532" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70531" i_stop="70420" i_length="112">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70419" g_stop="70319" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="178" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70318" i_stop="69616" i_length="703">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69615" g_stop="69412" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="382" r_length="204" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69411" i_stop="69246" i_length="166">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69245" g_stop="69164" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="464" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-U341848" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70608" e_stop="70532"/>
          <exon e_start="70419" e_stop="70319"/>
          <exon e_start="69615" e_stop="69412"/>
          <exon e_start="69245" e_stop="69164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGTGATGTCTAAAGCGAAGGTTGCTCGTGAAGGAAGTGATGAGCAACTGGTGGCTGTCGTGCAGATACAATCAGGTAAAAGTTATTTGCATGTTATCAAATATATGAAACCAAATATAGATTTACAGATCTTCTTTTTGGCAGCTGGTTATGAAACCAAATATATATTTACACATCTTTCTTGCAGCTATTCGTGGTTGGTTGGCTAGAAGGGGTCTTCGCAAACTGCGAAATTCAAAAATGTTAAATGTAGACAAACGAAGATCAGGCAGAAAGACGGAGGTCAAGGTACGCTGTGATAAAGATTCTCACCTATCCTTACTAGTAGTCCTTGTGTTTCAATTTTTATTCCCTTAATATACCTTATAATGGAATAATTAGCATTTTAAAAGTTTTCCCAAAGATTTTATTGTAACTTTTCGTGTTTCTTCGTTCAGCATTGTAAAGTCTGCTTCCGGACTAATATCTTTAAGAATTTGGTGGCCTGTTTCATGAAGCCAATTTTAGGTATTTCAGTTTTTCTTCTTTTTTGGGGGCATAGTTAAAACAATTTTGGGTATGCAACTGCTTTTCTAATTTCAGGATTCAGTGGAATCTTTCTTCATTTTTTATTCTTTCTTTGGAAGATGAAATACTCTGGCATCTTGCCGAGTGTTTGATTATTGAGATTGAAAGAAAAGGTGGTGAGAGAATGAATAGTATGGCCGTTTTTGGTTTATACGTTAGTCCTTCCCCTCTCCCATGTAGAAGCTAAAAGGGGAAAGGGAAAGGACAGTTGGTGAAGAATCACTGATGGATAAATCAGGATAATGGCATCATTTATCATGCCTTCTCCTTTTCCTTATTTCTTATTGCACAATGGCTAGTCATTCAAAGTGAAGTCTGATTTTAATTTAAATGTGAACAGTTGAGGCAGCAATGCAGTCTTTGATATTACTACTGACTGCTTGAGAATCTTTAGTAGTAAGTTTGAATTATTTTGTGCAAGCAGGAGTTGCCTCGAGAAATCCTACCATCTGTTGTAGAAGACCTCGAAAGACGGGTTGCAAAGGCCGAGGCAACAACTGAACAAAAGGAAAAGGAAAATGCTGCCCTGAAGGAACAAGTAAACCAATTCGAGACCAGATGCTTAGAATATGAGGTCAAGATGAGGTCAATGGAGGAGATGTGGCAAAAGCAAATGACATCATTGCAGGTGAGTAAGCTGCAATATGATCCTAGATAGTTCATTTTCTCTAGTTTTTGGTATCCGTAGTTCTATGAATTCTCTACTGATACTGCTGATGCTTGAAGTTGAGTTTTTACTTGTTAACTCATATTTTATGAATTTACAAGGTAATTGATTGCTTTGTTAAAAGCAGGTTAGTCTAGCTGCAGCCAGGAACAGTCTTACCGCTGCTGACACTACTGGTCGACCTGGAAAGCTTGAAGGTTCCCCATCTC</genome_strand>
        <mrna_strand>TAAAGTGATGTCTAAAGCGAAGGTTGCTCGTGAAGGAAGTGATGAGCAACTGGTGGCTGTCGTGCAGATACAATCAG................................................................................................................CTATTCGTGGTTGGTTGGCTAGAAGGGGTCTTCGCAAACTGCGAAATTCAAAAATGTTAAATGTAGACAAACGAAGATCAGGCAGAAAGACGGAGGTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGCCTCGAGAAATCCTACCATCTGTTGTAGAAGACCTCGAAAGACGGGTTGCAAAGGCCGAGGCAACAACTGAACAAAAGGAAAAGGAAAATGCTGCCCTGAAGGAACAAGTAAACCAATTCGAGACCAGATGCTTAAAATATGAGGTCAAGATGAGGTCAATGGAGGAGATGTGGCAAAAGCAAATGACATCATTGCAG......................................................................................................................................................................GTTAGTCTAGCTGCAGCCAGGAACAGTCTTACCGCTGCTGACACTACTGGTCGACCTGGAAAGCTTGAAGGGTCCCCATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U342639" ref_strand="+" ref_description="SGN-U342639        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | myosin family protein, contains Pfam profiles: PF00063 myosin head (motor domain), PF00612 IQ calmodulin-binding motif | chr1:18654356-18660774 FORWARD | Aliases: F14I3.6, F14I3_6(evalue: 1e-32, score=137) genbank/nr: gi|78708833|gb|ABB47808.1| myosin, putative [Oryza sativa (japonica cultivar-group)] (evalue: 5e-36, score=154)">
      <seq>tggctatcctactaggttaacacatcaagaattcacaagcaggtacggcttccttctgccaaaggatagtgcatgccaagatcctttaagtatgtcagttgccattcttcatcaatttggtattcttccggaactgtaccaagttgggtataccaagttatatttccgatcaggacagattgcttcattggaggatgcaaggaaccaagttctgcaaggtactcttgagttgcagaagtgcttccgtggtcatcgtgctcgtcggcacttccatgaactgaaaggaggagtaatcatacttcaatcatgtaaagcagatccctttgcaactcgtctcttttcttcccttttttcgttgaatataatagaagatgatattcatgaagattgttgtgtctatcaggttggatgagtatttttccatttcaagactatattagatgtcttcaaagttttgagcacttggggatgccattcaagtggttttagaaaaagaaaaaacatacaacttttgtctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="72225" stop="70552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71925" g_stop="71884" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71883" i_stop="71802" i_length="82">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71801" g_stop="71666" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="178" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71665" i_stop="71202" i_length="464">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71201" g_stop="70852" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="528" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-U342639" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71925" e_stop="71884"/>
          <exon e_start="71801" e_stop="71666"/>
          <exon e_start="71201" e_stop="70852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTATCCTACTAGGTTAACACATCAAGAATTCACAAGCAGGTGACATACACGATCCTTAGTTTGTTGCTGATTTGTTCTTTTGGTTGTTTGTCAACTTATATATATGATTGCGGTAATTTAGGTACGGCTTCCTTCTGCCAAAGGATAGTGCATGCCAAGATCCTTTAAGTATGTCAGTTGCCATTCTTCATCAATTTGGTATTCTTCCGGAACTGTACCAAGTTGGGTATACCAAGTTATATTTCCGATCAGGACAGGTGAATTCATGGTTTCTTGTTCTCTTGTGTGGATATGTTTACTTCTCAAAGAATTTATGTCATTTACTAAATCATCTAAAAGAAGCACCATAAATTTTGATTTTCTTCTAATCATTACTTCTATATAGTTGAACCAAATAATGATAAATGAAAAACATGTGGTGTGTCGATGTGCACGCTAGCTGGCCCAGACACCATAGTTATCTTGAAAAAATTGTGGTGTCTTCCAAACTGGTGGCACCATTTTGAGAAAAAAATCATATTTTTGGAGGCATATTTCTGTTTGGAGAAGGGTTTTGAGTGGTCAAACAATAAAAATGGCATAAGTTATGGTCTTATGGATATAACATATTCTCTGACATATACCCAATATGGGCTTCTAAGGAGACAATGGATACATCCTATTGAAGATTGGGTTTCCTTTTGTGTGCCTATATGTGAACTTCTGTCCCTCGTACATGTAGATTGCTTCATTGGAGGATGCAAGGAACCAAGTTCTGCAAGGTACTCTTGAGTTGCAGAAGTGCTTCCGTGGTCATCGTGCTCGTCGGCACTTCCATGAACTGAAAGGAGGAGTAATCATACTTCAATCATGTAAAGCAGATCCCTTTGCAACTCGTCTCTTTTCTTCCCTTTTTTCGTTGAATATAATAGAAGATGATATTCATGAAGATTGTTGTGTCTATCAGGTTGGATGAGTATTTTTCCATTTCAAGACTATATTAGATGTCTTCAAAGTTTTGAGCACTTGGGGATGCCATTCAAGTGGTTTTAGAAAAAGAAAAAACATACAACTTTTGTCTCAAAAAAAAAA</genome_strand>
        <mrna_strand>TGGCTATCCTACTAGGTTAACACATCAAGAATTCACAAGCAG..................................................................................GTACGGCTTCCTTCTGCCAAAGGATAGTGCATGCCAAGATCCTTTAAGTATGTCAGTTGCCATTCTTCATCAATTTGGTATTCTTCCGGAACTGTACCAAGTTGGGTATACCAAGTTATATTTCCGATCAGGACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCATTGGAGGATGCAAGGAACCAAGTTCTGCAAGGTACTCTTGAGTTGCAGAAGTGCTTCCGTGGTCATCGTGCTCGTCGGCACTTCCATGAACTGAAAGGAGGAGTAATCATACTTCAATCATGTAAAGCAGATCCCTTTGCAACTCGTCTCTTTTCTTCCCTTTTTTCGTTGAATATAATAGAAGATGATATTCATGAAGATTGTTGTGTCTATCAGGTTGGATGAGTATTTTTCCATTTCAAGACTATATTAGATGTCTTCAAAGTTTTGAGCACTTGGGGATGCCATTCAAGTGGTTTTAGAAAAAGAAAAAACATACAACTTTTGTCTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U339655" ref_strand="+" ref_description="SGN-U339655        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | cytochrome c biogenesis protein family, low similarity to cytochrome c biogenesis protein CcdA (Paracoccus pantotrophus) GI:11095328; contains Pfam profile PF02683: Cytochrome C biogenesis protein transmembrane region | chr5:22068263-22071604 FORWARD | Aliases: MDK4.11, MDK4_11(evalue: 4e-36, score=110) genbank/nr: gi|32402380|gb|AAP81162.1| c-type cytochrome biogenesis protein [Glycine max](evalue: 4e-36, score=113)">
      <seq>cgatataatatccacgttcaatcggcaaaccaagctcactgtttcttcttcttctctctttcatggcgctccagcactcgcctattggcacaattacttcttcagctcaaatgaagctggctgttagcagtttgaggtgctacgagcaccttcgtcctatcactatctcaagcttcaagcgttttccacgaagaattcagggtgcgcattgtagtgtggagcaaaggaagttgcttagcagaagtatttcgtccagcaaagaaaaatcgaaggatctccatgaagatgttttttctttgtcaatggcttgcactagtgccccaattagattcacaatgctctcaactgctgtcatagccacaaatttggttgcaacacataccgcaaatgctttgactatggataacatgatggatttctctagcgctgtctatacattagctgatggaagcattggagatctttttggtggccttctgtattctgctggtcaacaagctaatgaagctgttcagggccagttgactgctcttagttttactagtttggccactatttttggtgccgggcttgtaactagtctgtcgccttgtacactcagcgtactgcctctgaccccttggttatattggggcttttggttctgggaaaagccgagtagcggttgttggagattccattgcatttgcactgggattggcaaccacactagcattattgggtattgcggctgcatttgcctggaaggcatatgggcaaatagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="89245" stop="93830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89543" g_stop="89743" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89744" i_stop="90160" i_length="417">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90161" g_stop="90316" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="357" r_length="156" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90317" i_stop="91409" i_length="1093">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91410" g_stop="91465" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="413" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91466" i_stop="92316" i_length="851">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92317" g_stop="92447" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="544" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92448" i_stop="92540" i_length="93">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92541" g_stop="92626" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="631" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92627" i_stop="92718" i_length="92">
            <donor d_prob="0.872" d_score="0.96"/>
            <acceptor a_prob="0.628" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92719" g_stop="92750" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="663" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92751" i_stop="93428" i_length="678">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93429" g_stop="93530" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="765" r_length="102" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-U339655" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89543" e_stop="89743"/>
          <exon e_start="90161" e_stop="90316"/>
          <exon e_start="91410" e_stop="91465"/>
          <exon e_start="92317" e_stop="92447"/>
          <exon e_start="92541" e_stop="92626"/>
          <exon e_start="92719" e_stop="92750"/>
          <exon e_start="93429" e_stop="93530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAAATATCAACGTTCAATCGGCAAACCAAGCTCACTGTTTCTTCTTCTTCTCTCTTTCATGGCGCTCCAGCACTCGCCTATTGGCACAATTACTTCTTCAGCTCAAATGAAGCTGGCTGTTAGCAGTTTGAGGTGCTACGAGCACCTTCGTCCTATCACTATCTCAAGCTTCAAGCGTTTTCCACGAAGAATTCAGGGCAAGTAAATCCTCTTTTCGAGCCTCTCGAGCAATTTGTCTTTCTTAGTTTTTCTTCTTCATTTTCTTAGAAACTTAGTTAATCTGATTACTGTTGAGGTCAATAGCTCAGAAAATTTCAGTTATTTGGATACAAATTCTGGTGAATGAAGTTCTTCATCATTTTTTGGAAATTTATTTAATTTGATTACTGTAGAGATCAATAGCTCGGAGATTTCAGTTAATTGTATACAAATTCAGGTGAATTCAAGTACTTCAACAGAATTTTTGACTTCTGATACATGTAGTTTGCTCCAATTCGATGCAATAATGTCTGCCTTTTCTACTTTGATCCATAATAAACCAAGCGATTTACTCATTTAATCATATGTCTAATACTGTGTATTATCTACGTACTTTATGCTATTCGTTCTTCTAGGTGCGCATAGTAGTGTGGAGCAAAGGAAGTTGCTTAGCAGAGGTATTTCGACAAGCAAAGAAAAATCGAAGGATCTCCATGAAGATGTTTTTTCTTTGCCAATGGCTTGCACTAGTGCCCCAATTAGATTCACAATGCTCTCAACTGCTGTCATAGGTATTCTCCTTAGATCTTGCTAATCATGAAAAAATTTGGAGAGCTATATTGTGAGCATTGTAGTTAAATTTCCAGGGATTAACATATGCATGTTGTTTATAGCCTATTTTTTGCTTTGCCTTAGCAGTGGTAACTTGTCCATACCTTGAAACGTGACTACTACAAAGAGCAACAAATATTGAAGTTATATACCCAAATAGGAAATCCTACACTAAATTATGGCTTACTAGAAAGAGCAACCAATCATTTTTGCGAGAGGACTGCTATATATGCTCCTGAAATATAGAAAGCAGAGCTAAGATAATGTCTTGACTTTAGGGGCGGAGAAAATATTAGCTATGAGTCTGGATGGATCCTTAAAATATGTATAAATATTTAATTGCAAACCCCTTAAATAAAATGAGTTATGAGTTTGGTGGCACGTTTAGGATTCATAAACTTCAAATTCTAGCTTTATGCTGCTCTTGAAGCCTTGCAGTTCCTTCCCTCGAGACTATCAATCGAGTGCTAACGGAGCAAATCTTCCATATTGCTCAATGCCCTCGCAGCACATCTCCTCTCACTAAGGGTAAATCCTTTGCAGTGGAATCAGAGTCCTTCAATCCCAAAAATGTCCGAATGGCAATGGAGAAATAACTGATTGACCAAGTCTATAATCGAGGCATAAAATTACTCATGTAATGTAGTTTGGTTTGTATGATTGCCTTCATCCAAATCAAATCCCCTCACTTTCATTGGCCATCTTGAATTACCATTAAAGAAGACTAGACTCACTTGAGTGCCCCGATCACACTCATCACTACTGATGCTTTTTTATTGTAACTTGCTGAGGCGACCTAGCAGCAGGAGTCACTGTTTCTGTTCTTAAATTGATTATGTATTATATGAGCTGTTTCATGAATTTTCTTTTCAGAAAATGTTTGTAGACTTGAGTTGTGACATCTGTCAAAATCATTCAGTAACTGGGGCTTGCATTTTGTTTTGGCTTTGATTAAAATGTTTTGTTTTCTGCTTAGTAAATGCTTTTGCCTGATTTCATAATTAATTCACGCTTAACAATAAAATAACACTAATTATCTGTCTTCACATTTAGCCACAAATTTGGTTGCAACACATACCGCAAATGCTTTGACTATGGATAACATGATGGTGAGAATTCCTTCGTCAACCTTAAGTTTCTTACTATGTTGTTTGGTGTTTTTTTTTAAATGTTTTGCATATGCTTTTGTAAAACCATCATGACACGCGATAACATAAGATGACATATGTAGCATCTGTTTGATCTATGCTTCTTTTTCTTTCTTCTGCTCTTACGGATCTCAAATTTATGTTTCATTGACTAATCATGTGCATGTATATTTTTGTATGGCCTGTTTCCCATGAATTAAAGAAATGGTTCCTTTCTTACTACTCTGTTCTGTTTTTTTTCTTTATGAGATAACATATACTGAAATAACAACAGCAGATTAAAGTAAAAGAGTTCATAGCGAACTTGCTCCTAGATGTTCTCTTGCTAAGCTGAATTTCTTGTAATACTTTCTGCATCAGTTTGTATGTCTATTACTGGCTTAGTGGGGGAGATATGTGCTTAACATCTTTGTGGGGATGATATGCGGAAATTTTAGTCTTCTATTTACCAGTGTTATAGACGACACATTAGTTTGAATCTTGGTTAGATAAGATGTGAGACCCTTGTTCAAATCTCGAAAATTTGAGGGGAGCTATTGAAATTATGTACACTTGGATGGAAGCTTGACCTGTTATCGAAATGTCTTATTCCGGCTAGCAACATGTTGATGAAGCCACTTATAACCTGCAGTGTCGGCCCAATTGATTTGTATTTTCAGTGTTTAATTGCATTTTGTTGAGACCTTTTTTGTGATTCTTTGCAGTTTGAACTAAGTATTCATTTCCTAGTGGAATGTATTTCACATAAAACAGTGGTAAATCTTCAACTGATTATATGTTAAGGGGACTATACTTGTCTTCATTGACTTCAGGATTTCTCTAGCGCTGTCTATACATTAGCTGATGGAAGCATTGGAGATCTTTTTGGTGGCCTTCTGTATTCTGCTGGTCAACAAGCTAATGAAGCTGTTCAGGGCCAGTTGACTGCTCTTAGTTTTACTAGGTCTAAATCTTAATCATGAAAATTTCATCTGGTACTCATATAATGTATTCATAAAATTTGGTGCTTCTGATTCTTAGACTTTCCTCCTTGCAGTTTGGCCACTATTTTTGGTGCCGGGCTTGTAACTAGTCTGTCGCCTTGTACACTCAGCGTACTGCCTCTGA-CCCTTGGTTATATTGGTAGGAACTTTGAAGTTGAATCTTTTCTCTCTAAATATGCAGCATATATTCTCTCTCTCTGACGATTTTACGATCTTTTGAAATGACCTTAGGGGCTTTTGGTTCTGGGAAAAGCCGAGTAGCGGTAAAAACCTTTCTCTTAAATTTAATTTTGTATTGTTTCTTCTTTATCCTTGCACTTTTGATGTGCATTGTTCTCAATGAAGGAACTTAGGTTATAGATCATACAGAAAATTTTGACAGGTTTATATGTGAATCCTTTTACCTCAAATTTTTTGAATCTCATGTAAAGGTTTACTTGCGAATCCTGTAAGTGGTGAATGATGGTTGTTTATTTCTTGATGATGAGTCCATTTATGATTTTCGTTATGATAAAATTCTATCACAACAAATGTTTATTTAACGGATGCCATGATCGACTTCCTCAGTTCATTACACAACTTGTAATGTTGCTTGTAGCTCTCTCCCAACATCTGCTTTTTACTGTCGTGCATCAATATAGACAATTTACTGATAAAAACTAATAATAATCAAAGTTAATGTTTTCTCCATCAAACTAGTTTTTCAATTGGTACTTCAATATTTCTACTAATGTTTATATTGAAGTCATACTGATATCTTCTACTCCGTGTCAACCAAAAGGTGTCGTATAGAATATGAAAGGAGTACTAGAAAGTAGAAAATTATTTTATGCACAAAGCTTTGCAGAATTCTGCATTTTCCAATTGGAAATTTACCAGAGGCCAGAGCGTAGTACTAGTTCAATTTTCTCTCTTAACACTTAAGCAATCCTTGTGTACAGGTTGTTGGAGATTCAATTGCATTTGCACTGGGATTGGCAACCACACTAGCATTATTGGGTATTGCGGCTGCATTTGCTGGAAAGGCATATGGACAAATAGGA</genome_strand>
        <mrna_strand>CGATATAATATCCACGTTCAATCGGCAAACCAAGCTCACTGTTTCTTCTTCTTCTCTCTTTCATGGCGCTCCAGCACTCGCCTATTGGCACAATTACTTCTTCAGCTCAAATGAAGCTGGCTGTTAGCAGTTTGAGGTGCTACGAGCACCTTCGTCCTATCACTATCTCAAGCTTCAAGCGTTTTCCACGAAGAATTCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGCATTGTAGTGTGGAGCAAAGGAAGTTGCTTAGCAGAAGTATTTCGTCCAGCAAAGAAAAATCGAAGGATCTCCATGAAGATGTTTTTTCTTTGTCAATGGCTTGCACTAGTGCCCCAATTAGATTCACAATGCTCTCAACTGCTGTCATAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAAATTTGGTTGCAACACATACCGCAAATGCTTTGACTATGGATAACATGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCTCTAGCGCTGTCTATACATTAGCTGATGGAAGCATTGGAGATCTTTTTGGTGGCCTTCTGTATTCTGCTGGTCAACAAGCTAATGAAGCTGTTCAGGGCCAGTTGACTGCTCTTAGTTTTACTAG.............................................................................................TTTGGCCACTATTTTTGGTGCCGGGCTTGTAACTAGTCTGTCGCCTTGTACACTCAGCGTACTGCCTCTGACCCCTTGGTTATATTG............................................................................................GGGCTTTTGGTTCTGGGAAAAGCCGAGTAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGAGATTCCATTGCATTTGCACTGGGATTGGCAACCACACTAGCATTATTGGGTATTGCGGCTGCATTTGCCTGGAAGGCATATGGGCAAATAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U339654" ref_strand="+" ref_description="SGN-U339654        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | cytochrome c biogenesis protein family, low similarity to cytochrome c biogenesis protein CcdA (Paracoccus pantotrophus) GI:11095328; contains Pfam profile PF02683: Cytochrome C biogenesis protein transmembrane region | chr5:22068263-22071604 FORWARD | Aliases: MDK4.11, MDK4_11(evalue: 5e-14, score=75.1) genbank/nr: gi|27464263|gb|AAO16020.1| biogenesis protein [Medicago truncatula](evalue: 1e-12, score=76.6)">
      <seq>gatcttaggggcttttggttctgggaaaagccgagtagcggttgttggagattcaattgcatttgcactgggattggcaaccacactagcattattgggtattgcggctgcatttgctggaaaggcttatgggcaaataggacaaggattgcccgtggctgcttcctttttagctattgttatggggctaaacctgttagaggtaactacatatgttgaatgcttcgatagtttagtaatacccttttacttctaagtttttgttttgagactttgttgagtactattgtctttattctttattgagcccatgctaacatttgctttttgtctgatattcagatattttgttctaaaggaattacagcgcttgttgttttgatatgttaatcactcttgcttgcataaatacctatcagttaaaaaagtgatgttctatgcagtaccaggtgccccacatcatctttaccataatgagaacctgtgaaacaaaagaagagagatccgtctaggcatttcgatagaatgatgactgctacttttggtacctggatagtgaaaattgtggataaaaccatcggatctaagtacaaattgtatgtctggatttagcaaaagctatgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="92411" stop="94307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92711" g_stop="92750" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92751" i_stop="93428" i_length="678">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93429" g_stop="94007" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="627" r_length="587" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-U339654" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92711" e_stop="92750"/>
          <exon e_start="93429" e_stop="94007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTTAGGGGCTTTTGGTTCTGGGAAAAGCCGAGTAGCGGTAAAAACCTTTCTCTTAAATTTAATTTTGTATTGTTTCTTCTTTATCCTTGCACTTTTGATGTGCATTGTTCTCAATGAAGGAACTTAGGTTATAGATCATACAGAAAATTTTGACAGGTTTATATGTGAATCCTTTTACCTCAAATTTTTTGAATCTCATGTAAAGGTTTACTTGCGAATCCTGTAAGTGGTGAATGATGGTTGTTTATTTCTTGATGATGAGTCCATTTATGATTTTCGTTATGATAAAATTCTATCACAACAAATGTTTATTTAACGGATGCCATGATCGACTTCCTCAGTTCATTACACAACTTGTAATGTTGCTTGTAGCTCTCTCCCAACATCTGCTTTTTACTGTCGTGCATCAATATAGACAATTTACTGATAAAAACTAATAATAATCAAAGTTAATGTTTTCTCCATCAAACTAGTTTTTCAATTGGTACTTCAATATTTCTACTAATGTTTATATTGAAGTCATACTGATATCTTCTACTCCGTGTCAACCAAAAGGTGTCGTATAGAATATGAAAGGAGTACTAGAAAGTAGAAAATTATTTTATGCACAAAGCTTTGCAGAATTCTGCATTTTCCAATTGGAAATTTACCAGAGGCCAGAGCGTAGTACTAGTTCAATTTTCTCTCTTAACACTTAAGCAATCCTTGTGTACAGGTTGTTGGAGATTCAATTGCATTTGCACTGGGATTGGCAACCACACTAGCATTATTGGGTATTGCGGCTGCATTTGCTGGAAAGGCATATGGACAAATAGGACAAGGATTGCCCGTGGCTGCTTCCTTTTTAGCTATTGTTATGGGGCTAAACCTGTTAGAGGTAACTACATATGTTGAATGCTTCGATAGTGTAGTAATACCCTTTTACTTCTAAGTTTTTGTTTTGAGACTTTGTTGAGTACTATTGTATTTGTTCTTTATTGAGCCCATGCTAACATTTGTTTTTTGTCTGATATTCAGATATTTTGTTCTAAAGGAATTACATCGCTTGTCGTTTTGATATGTTAATCACTCTTGCTTGCATAAATA-C---C----AAAAGAGTGATGTTCTATGCAGTACCGGATGCCCCACATCATCTTTACCATAATGAGAACCTGTGAAACAAAAGAAGAGAGATCCGTCTAGGCATTTCGATAGAATGATGACTGCTACTTTTGGTACCTGGATAGTGAAAATTGTGGATAAAACCATCGGATCTAAGTAAAAATTGTATGTCTGGATTTAGCAAAAGCTATGCTTT</genome_strand>
        <mrna_strand>GATCTTAGGGGCTTTTGGTTCTGGGAAAAGCCGAGTAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGAGATTCAATTGCATTTGCACTGGGATTGGCAACCACACTAGCATTATTGGGTATTGCGGCTGCATTTGCTGGAAAGGCTTATGGGCAAATAGGACAAGGATTGCCCGTGGCTGCTTCCTTTTTAGCTATTGTTATGGGGCTAAACCTGTTAGAGGTAACTACATATGTTGAATGCTTCGATAGTTTAGTAATACCCTTTTACTTCTAAGTTTTTGTTTTGAGACTTTGTTGAGTACTATTGTCTTTATTCTTTATTGAGCCCATGCTAACATTTGCTTTTTGTCTGATATTCAGATATTTTGTTCTAAAGGAATTACAGCGCTTGTTGTTTTGATATGTTAATCACTCTTGCTTGCATAAATACCTATCAGTTAAAAAAGTGATGTTCTATGCAGTACCAGGTGCCCCACATCATCTTTACCATAATGAGAACCTGTGAAACAAAAGAAGAGAGATCCGTCTAGGCATTTCGATAGAATGATGACTGCTACTTTTGGTACCTGGATAGTGAAAATTGTGGATAAAACCATCGGATCTAAGTACAAATTGTATGTCTGGATTTAGCAAAAGCTATGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U329726" ref_strand="+" ref_description="SGN-U329726        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains similarity to cotton fiber expressed protein 1 (Gossypium hirsutum) gi:3264828:gb:AAC33276 | chr5:22071195-22072656 REVERSE | Aliases: MDK4.12, MDK4_12(evalue: 1e-23, score=106) genbank/nr: cotton(evalue: 2e-29, score=131)">
      <seq>ggagcattgagagtatcaaaacctaaacggcaagacacgctggagagtacatggaagacgataacggagggccgtgcaatgccactaacgaggcacctgaggaaatcagacacgtgggagacatacggtggtcggaacccggttacaccaccaccgcagaagatgaagaaatctgagacgttcaatgacagaactacccctgactcctcgccattgctgactccgtccccgggtggttcagggaaacttaagaaagagccatcgctaagtcaagacgagctgaacaggcgagttgaagcgtttattaagaagtttaatgaagatatgaggttgcagaggcagcagtcgatgcaacagtacactcagatgatcaatcgaggctcacattaggagtttttttcatataaacagagaagctctctcttttttcatgttttatggcttatagtgaatgcatattgttatttattcatatttcttttatcgagaaattctcccaaaaaaaaactaaaaaactacaggaagctgtaatccagttagaacatagactatattatcggaaagtttgagttgtaatgttttatttttctttcatgtggatattatatggccttaacatgtgatcgaacagtgttgtgttctccatacagaaattgaaatatttttattgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="97903" stop="96634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97603" g_stop="96922" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-U329726" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97603" e_stop="96922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCATTGAGAGTATCAAAACCTAAACGGCAAGACACGCTGGAGAGTACATGGAAGACGATAACGGAGGGCCGTGCAATGCCACTAACGAGGCACCTGAGGAAATCGGACACGTGGGAGACATACGGTGGTCGGAACCCGGTTACACCACCACCGCAGAAGATGAAGAAATCTGAGACGTTCAATGACAGAACTACCCCTGACTCCTCGCCATTGCTGACTCCGTCCCCGGGTGGTTCAGGGAAACTTAAGAAAGAGCCATCGCTAAGTCAAGACGAGCTGAACAGGCGAGTTGAAGCGTTTATTAAGAAGTTTAATGAAGATATGAGGTTGCAGAGGCAGCAGTCGATGCAACAGTACACTCAGATGATCAATCGAGGCTCACATTAGGAGTTTTTTTCATATAAACAGAGAAGCTCTCTCTTTTTTCATGTTTTATGGCTTATAGTGAATGCATATTGTTATTTATTCATATTTCTTTTATCGAGAAATTCTCCC-AAAAAAAACTAAAAAACTACAGGAAGCTGTAATCCAGTTAGAACATAGACTATATTATCGGAAAGTTTGAGTTGTAATGTTTTATTTTTCTTTCATGTGGATATTATATGGCCTTAACATGTGATCGAACAGTGTTGTGTTCTCCATACAGAAATTGAAATATTTTTATTGATTTTTGAACAAT</genome_strand>
        <mrna_strand>GGAGCATTGAGAGTATCAAAACCTAAACGGCAAGACACGCTGGAGAGTACATGGAAGACGATAACGGAGGGCCGTGCAATGCCACTAACGAGGCACCTGAGGAAATCAGACACGTGGGAGACATACGGTGGTCGGAACCCGGTTACACCACCACCGCAGAAGATGAAGAAATCTGAGACGTTCAATGACAGAACTACCCCTGACTCCTCGCCATTGCTGACTCCGTCCCCGGGTGGTTCAGGGAAACTTAAGAAAGAGCCATCGCTAAGTCAAGACGAGCTGAACAGGCGAGTTGAAGCGTTTATTAAGAAGTTTAATGAAGATATGAGGTTGCAGAGGCAGCAGTCGATGCAACAGTACACTCAGATGATCAATCGAGGCTCACATTAGGAGTTTTTTTCATATAAACAGAGAAGCTCTCTCTTTTTTCATGTTTTATGGCTTATAGTGAATGCATATTGTTATTTATTCATATTTCTTTTATCGAGAAATTCTCCCAAAAAAAAACTAAAAAACTACAGGAAGCTGTAATCCAGTTAGAACATAGACTATATTATCGGAAAGTTTGAGTTGTAATGTTTTATTTTTCTTTCATGTGGATATTATATGGCCTTAACATGTGATCGAACAGTGTTGTGTTCTCCATACAGAAATTGAAATATTTTTATTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335579" ref_strand="+" ref_description="SGN-U335579        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT5G54310.1 | Symbol: None | ARF GAP-like zinc finger-containing protein ZIGA3 (ZIGA3), nearly identical to ARF GAP-like zinc finger-containing protein ZIGA3 GI:10441352 from (Arabidopsis thaliana); contains InterPro accession IPR001164: Human Rev interacting-like protein (hRIP) | chr5:22074278-22078457 REVERSE | Aliases: MDK4.13, MDK4_13 (evalue: 6e-18, score=88.2) genbank/nr: Arf(evalue: 4e-19, score=98.2)">
      <seq>tgcacaacaaagcactaatggcaccaatatggtaaatcagaactggccaaatttaggctatcagttccctggagtgataatgccagcagctggtaagactgagctggagaaatatatgcaggtaggcaatatgggaccagcacatgtagttggaaactctgtgccaattccagcatccagcttctactcaatgggacagaacacttccagcaacggtattgtgccgccaggaccaagcaagcaagcagctaccccgatatcatcaagctccacacagtcaacaaaagaattcgacttttcatccttgacacagggtatgttcacaaaacgctgaaaaaccaacaaggaagcatactagctattagtatacaaattgtttttttttcccacaggaaattagcttttgttgttctactcctgttttggagattgtaaactaaatgtagaggaccaaatattgagttttctttaaggtgatggcttgatttgtatttttgtatctggaaaaataagctctcaaagattggatggtattcgattcttttccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="103773" stop="102025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103473" g_stop="103353" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103352" i_stop="103233" i_length="120">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103232" g_stop="103174" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="180" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103173" i_stop="102694" i_length="480">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102693" g_stop="102325" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="549" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-U335579" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103473" e_stop="103353"/>
          <exon e_start="103232" e_stop="103174"/>
          <exon e_start="102693" e_stop="102325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACAACAAAGCACTAATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAGGTATAACACGAGTACTATTTATCAAAGATAAAGAGAAAAAAACACACGGATATCTGATTAAATATTGAAATTTTCTTTAAGTTTCTTTACTCAAAGCTGTTTATTTTTCTTCTAAACTAGGTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAGGTATTAACCTCTGATCGTTGTTAGTTAATGTAGAACTTCAACTGTTCTTTGAGGGCCTAATGTTTGGTCTATAAATTCAACAACTTAATCCAATGCATCTATCCTGCCAATTATTTGTCATTAAGATCTCTTAAATTATGACCCCTTAATGCTCAATGTAGTGTATCCATTAACTGTTTCTTCCATTTGATTTAAAGTATCCCTCCTCTTACTCCTCTTGTTAATAATGGGTTGCGGACAGACCCCATTGAACAGTATTTTTTTAATCCATAGCTACATCTCCGGAGGTATATGATCAATTTGCATTGACAAGCTCAGTTGCCAGTCATCTTTGACTTAGTTTAATACTGATGTAGGTTATTGAATCAGTTGAACAAATTTTGATAGTTGTGCTATCTATCGTATCCAGGAGGAACAAATTTTTGGGTGCTAGTTAATTTTTCATCTTTTGATGCTCATAGTTGATCTTTTGTTCTGCAGCTTCTACTCAATGGGACAGAACACTTCCAGCAACGGTATTGTGCCGCCAGGACCAAGCAAGCAAGCAGCTACCCCGATATCATCAAGCTCCACACAGTCAACAAAAGAATTCGACTTTTCATCCTTGACACAGGGTATGTTCACAAAACGCTGAAAAACCAACAAGGAAGCATACTAGCTATTAGTATACAAATTGTTTTTTTTTCCCACAGGAAATTAGCTTTTGTTGTTCTACTCCTGTTTTGGAGATTGTAAACTAAATGTAGAGGACCAAATATTGAGTTTTCTTTAAGGTGATGGCTTGATTTGTATTTTTGTATCTGGAAAAATAAGCTCTCAAAGATTGGATGGTATTCGATTCTTTTCCTA</genome_strand>
        <mrna_strand>TGCACAACAAAGCACTAATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAG........................................................................................................................GTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTACTCAATGGGACAGAACACTTCCAGCAACGGTATTGTGCCGCCAGGACCAAGCAAGCAAGCAGCTACCCCGATATCATCAAGCTCCACACAGTCAACAAAAGAATTCGACTTTTCATCCTTGACACAGGGTATGTTCACAAAACGCTGAAAAACCAACAAGGAAGCATACTAGCTATTAGTATACAAATTGTTTTTTTTTCCCACAGGAAATTAGCTTTTGTTGTTCTACTCCTGTTTTGGAGATTGTAAACTAAATGTAGAGGACCAAATATTGAGTTTTCTTTAAGGTGATGGCTTGATTTGTATTTTTGTATCTGGAAAAATAAGCTCTCAAAGATTGGATGGTATTCGATTCTTTTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U316297" ref_strand="+" ref_description="SGN-U316297        Tomato 200607 #1 [19 ESTs aligned] arabidopsis/peptide: AT5G54310.1 | Symbol: None | ARF GAP-like zinc finger-containing protein ZIGA3 (ZIGA3), nearly identical to ARF GAP-like zinc finger-containing protein ZIGA3 GI:10441352 from (Arabidopsis thaliana); contains InterPro accession IPR001164: Human Rev interacting-like protein (hRIP) | chr5:22074278-22078457 REVERSE | Aliases: MDK4.13, MDK4_13 (evalue: 2e-132, score=469) genbank/nr: Arf(evalue: 2e-134, score=482)">
      <seq>tttctcatccagttgcatttttcttttgatagatatttacgcgtcggagaggggaggaatcagatcggcgatttttattttccgatagcttctctctccgtcggttaattcgcttaaacccttgctatcgtcatcatgaatgagaaggctaatgttactaaagagcttaatgcgaagcatagaaagatactagaaggacttcttaagttgcccgagaacagggaatgtgcagattgcaaagccaagggtcctagatgggcaagcgtgaacctgggaatatttatatgcatgcaatgctctgggatccacagaagcctgggggtgcacatatcaaaggtcagatcagctacactagacacatggcttcctgaacaagttgcatttatccattcaatgggaaatgagaggtcaaatagtttttgggaagcagagctgcctccaaattatgatagagttggtattgagaatttcatccgagcaaaatatgaagagaagaggtgggtccctaaggatgggattcaaaaatcaccttccagggttcaagaagagagggcttcggtgcaatggcaacaaaacaatgatagaagtgggcgtatacatgcagctagctcaggatgtgcatctgacgagaggaaaaatattcaagcctcgaaagtgaagcaagatgtacctgctgctagagtcagtataccagtgcctcctagaggaccagagcatgtaacttcaggtcaggttgctaaccagacaagtcagaaagcagagccagttgcagtcactgaaccagctaagcaggttccggaagctgccagtcctcctaaagttgattatgctactgatctatttgacatgctttctatggattgtccaactgacaatggctcagaagcagcttctaccgatgataactcctgggcaggcttccagtctgctcaagttacaaactccattgatcagaagaagtctcaatctgctgctgcttctggaattgaagatttattcaaggatttaccatcaattgtgccttctgcctcatcgcagaagccacagaaagatgctaaaaacgatataatgagccttttcgacaagtccaatattgtgtcaccttttgctatacatcaacaacaacttgttatgctggcgcaacaacagtctttactgatggctgcggctgctgcaggtggtgctgtaagacttcctgtaaatgcacaacaaagcactaatggcaccaatatggtaaatcagaactggccaaatttaggctatcagttccctggagtgataaagccagcagctggtaagactgagctggagaaatatatgcaggtaggcaatatgggaccagcacatgtagttggaaactctgtgccaattccagcatccagcttctactcaatgggacagaacacttccagcaacggtattgtgccgccaggaccaagcaagcaagcagctaccccgatatcatcaagctccacacagtcaacaaaagaattcgacttttcatccttgacacagggtatgttcacaaaacgctgaaaaaccaacaaggaagcatactagctattagtatacaaattgtttttttttcccacaggaaattagcttttgttgttctactcctgttttggagattgtaaactaaatgtagaggaccaaatattgagttttctttaaggtgatggcttgatttgtatttttgtatctggaaaaataagctctcaaagattggatggtaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="109494" stop="102041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109194" g_stop="109009" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109008" i_stop="107277" i_length="1732">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107276" g_stop="107218" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="245" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107217" i_stop="107080" i_length="138">
            <donor d_prob="0.217" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107079" g_stop="106989" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="336" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106988" i_stop="105939" i_length="1050">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105938" g_stop="105884" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="391" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105883" i_stop="105790" i_length="94">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105789" g_stop="105699" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="482" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105698" i_stop="105595" i_length="104">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105594" g_stop="105360" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="717" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="105359" i_stop="104502" i_length="858">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104501" g_stop="104294" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="925" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="104293" i_stop="103830" i_length="464">
            <donor d_prob="0.663" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="103829" g_stop="103669" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="926" r_stop="1086" r_length="161" r_score="0.963"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="103668" i_stop="103590" i_length="79">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.787" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="103589" g_stop="103353" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1087" r_stop="1323" r_length="237" r_score="0.987"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="103352" i_stop="103233" i_length="120">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="103232" g_stop="103174" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1324" r_stop="1382" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="103173" i_stop="102694" i_length="480">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="102693" g_stop="102344" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1383" r_stop="1732" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-U316297" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1732</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109194" e_stop="109009"/>
          <exon e_start="107276" e_stop="107218"/>
          <exon e_start="107079" e_stop="106989"/>
          <exon e_start="105938" e_stop="105884"/>
          <exon e_start="105789" e_stop="105699"/>
          <exon e_start="105594" e_stop="105360"/>
          <exon e_start="104501" e_stop="104294"/>
          <exon e_start="103829" e_stop="103669"/>
          <exon e_start="103589" e_stop="103353"/>
          <exon e_start="103232" e_stop="103174"/>
          <exon e_start="102693" e_stop="102344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCATCCAGTTGCATTTTTCTTTTGATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAGGTATTTTTTGTTCCGATTCATGATTTCTCTTTTGAATTTCAGTTTATTGTGGTTGATCTAGTTAGATTTGATGATGTTTGGCTAGTGTTTGAGTTTGGTTGATACATCTTTACATGGTTTTATCAGTTAATAGTTGAGATTTGGGGCTTATTGGATCCTTTTAACGCTTGTGTTCTTATGGAACTCCTATTGTAGTTTTATTCTGATAATTCGAGCAGTGAAATACTGATCTAGTTCAACTAGGTGCTTGGAATTATGATTTTGGATGTACATTTTTTCGTAATAGAAGAAGAAAAACAAATATTTACACATTACGCACACAATTGGATTAAAAAAAGGATCTTTAAACTCATGTGCTACCCGAATAAGAGATTTTGAAGAACTGTGATAGGTCTTGAGACAGACAGTCTTGTTAAATTACTGAAAGCAAGCACCTTGCTTTGTACCTCAACTTTCCGTTATTATTAACAAAGATAATATATTTTATCTTAAAGCAAGCACCTTGGTTTAAGTTTGGTTGATGCATCTTATACGCTTTTATCAGTTAATATTTGAGATTTGGGGCTTATCAGGTCCTTTTGCTCCGTTTCCTAAAATTGAACTTCTATTGCTAGTTTTATTCGTGATAATTTGAGCACTGAAATGATAATCTGGTTTAAGCAGGTGCTTGAAATTATAATTTTGGATGTTCATTTTTACCTAAATGAAAAAGAAAAACAGACACTTACTCACACTACTGGATAAAAGAAAAAAATGAGACGGACACATGTAGATTTAGTTAGTGCAATTCCAAACATAGTCAGTTGTTAAATTACTTAAAGCAAGCACCTTGCTGTGTACCTTAACTCTCCACTACTATTAGTAATCTGTCTTTATCTTGATAATTTGAATCACTTCTTTGCACATGACACCAAGACAGTGTCAATATTACATAAGGGTTAGCACTGGCTGTCCAAATCTATCTGTACAAAGAGGAATCTCTTCTTTGTAAAGAGATCTCCTTTGGCTTTCCATCTCTGTCTTTCACTCCTTTAAAAGTTCTACTGTGCCTTCCTCGCCGGATAGTCAGGGAGTGTGTGTAGGTTCTGTCTTCCAAATCACCTTCTTATTAGTCTCAAATATTCCTTTAGTTGTATATGATACATCCAAGAGACGGGTTTTAAGGATATACATCATTTCTTATTGTTACTAATTATTTAAGGACTTAAGGTGAAATTTGTTCATAGTACCATGGCACTATTGACATATTATTCCTTTCTTAGCTCATTAAATTGATTCCAACATGCATATAGCTGGAATCAAGAACCTAAAGTTAAAGCCTTTCATCATTCGTCTACTTTTTTCCGGCTGAAATTACTAGTTAGAAGTGACTCTATCATTAGAGTTAATGAGTTATCCAGAGCTCTCTGATGGAGAGGTGGAGGAGGAAAGATAATTTCTTTATAAGTTAGAGGATGTATGAAAGCAACTTTAGCAAGCTCTCAATGGAAGCTTCTTCTTCATGAATTTAGAATTCTTAACTGCCAAAGCTGAATTAGAATTCTTGTAGGAAGAAAGGCAAAATTTTCTTCTAATCCAAGCAAAAAACACTATTAACCACAACAAGAAAACCACAAGGATGATTATCATCGTTGCAGCTTTTGGTTCTATTATGATTTTTTCATAGTTTACTTACTGGTGGTTTATGTGTGCATGCACATTCGAAGTAACTCATTGCTGTGCTTGTTGACAGATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAAGTACGTATTAGGATGTATTTGAAACGTGACAAAGTGAAGCTCGGATGCGCTTGTTAATAGATCATTGAATTGAACAGAATTGGCTTTATGTATTTGGAATCCTTGTATTTACTGTATTTTTCTTTTTCTCCAATGCAGGGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAGGTGATATATCCCTTATCATAACCAAGATGTTCCACATATACTAAAAAATCTGAAATGGTGGTGGGCACTTGCAGTCAATAGTAAAGGTTATGGTAAACTTTAGTGCTCCCTGTTGTTGCTGCTGTAGTAGTGCTGCTTCATATTCTTGACCGAGTTAAAATTCTGTGAACCACTAAGTACGACTGAAGACTCAAAACTCATTCCTTTTTCTCCTGGGACACCCCTGATGAATATATGTTGATTTTTTATCACAAGGATGAGGAACATTTCATATCTATTAATTCATGACTCTACTACTGAAATTCAACATATATCTATCTTTCTTCCTCTGTTATTGCATTGTCTTCTGATTGGAGGAATAGTTGTTATGTACTTCGGTTGGAAATCACTCTTCATTTCCTCATCTTTGTGTTTTATGACTATGATGCAGGAATAATTTCTAACATCTACCCAATCTCATCCTTTTTTTTTTTTGAAAACATGTTATGCACATATGTCGACTGAATGGAGTCATACAACTATTACCCACTATCGTTAGGATGAAGAAAGTCTGAATCTTTTTGCCATTTCATCCCGGGGGAGGGGGTAGGACAACTGCTAGCATTAGGAAAATCCATGGTCGTTATAATCCTTGCGCACTTTCTGTCAATGTGTGGTTGTTAAGTATCTCCTGACTTGGACATGTGACAAGATTTCTCTCATCTTCCTTCAACCTTGGCTAGTTTTTTTTCCCTTCTATTTTTAAATGGTTGTATTTTACTGGCTCATTGTAGTTTGAATCTACTTCTGTATATCTATGGAATAGCCTCTCATTTTTAGTTGAACTCATGAGGTTCTTATTTCCATAGAAGATACGTCTTTTGTAGAACACTATACTTTTTGTATGTTCTCTTACTATTTGTTATGTCACTTGTACATGGGATATAATCCCACATCTTTTACATGGTCAAAAAAAATATCTATATTTTAGAAGAATGACTCATTTTACTCTTGAGCGATTGTTAATTGTTCCATTTTTTGGTTTTGTTCTCTGATTCTCTGAAATTGCAGGTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATTGTAAGGTTTCTGTTTCTGATACTTATCACTGTTTCGATTTCGATCTGATAGATAATTATTTATTACCCTTCTTTTTCTCTTTGGGTTGATATAGCAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCGAGCAAAGTACGTGCTTACTAATTCTCTAACAATTAGTACCTTTATGCAGTCTTCTTTCACTCAATCTAGTATTTGATGCTTATTCAAGACATTTCCTGTGTTTTGATAAGATATGAAGAGAAGAGGTGGGTCCCTAAGGATGGGATTCAAAAATCACCTTCCAGGGTTCAAGAAGAGAGGGCTTCGGTGCAATGGCAACAAAACAATGATAGAAGTGGGCGTATACATGCAGCTAGCTCAGGATGTGCATCTGACGAGAGGAAAAATATTCAAGCCTCGAAAGTGAAGCAAGATGTACCTGCTGCTAGAGTCAGTATACCAGTGCCTCCTAGAGGACCAGAGCATGTATGTTAAACTTATTCGTCAAACTGTTTTTGTCCATGCTACTTTCCCTTCCAGGTGTAGTATTATTGTTTCAATGTTCTATTTTGAATGAAATCTTATTCTTTTGCTGGTTATCTACCCGACTTGCCTATGTATGTGAGCTGATTGGGCCGTTAGCTCTTGAGTTATTGGTTCACTGTAAGGGTCGTTTGGTAGAGTGTATTAATATAATGCAAAATAGAGTATACTAGTAATGCTTGCATTAGCAATTCAGTATTAGTTATGCTTGCATTAATTATACATAGATTATTTTTATGCATTGTTTGGTTTGATGCATTAAAATAGAATGCATTACATTAAAAGAAATATTTACAAAGATACCCTTCACTATTATGGTAGAAAAGATATAACAAAGGTATTGAGGGGCAATTGGGTGTTTAATTGAGTTAATGCATGCATTAAAAGCATTGCATTGTTAGAAATATATGCTATTAGCAATACACATCTTAATGCACAATAGAGTGTGTAACTAATGCAAGCATTAGTTATACATAGGTTGGAAAAGAGTACCAAACAAGTTACTAGCAACACACAAGGCTAATGCATGTATTATTTTTTTAATACACTCTACCAAGTGTTCCCTAAGTGTATTTGTGTTGAATATTGATTCTTTACTCAGATTAATGAATTAAGCAGCTCTTGTTCATACTGTTTAGCTATTACATACTTGGAATCTTAGTTTTTATGTACGTGGTGTATTCATGGCCCCTGTTGGTCCTTCTGTAGTTCTGTATAACTGCTGCTAGCTGCTGTTTCTTCTGAGTTAGTTTGGATACTTTCTGGATTAGAATAGACTCTTATAGGTTTGACACCTTGCAGGTAACTTCAGGTCAGGTTGCTAACCAGACAAGTCAGAAAGCAGAGCCAGTTGCAGTCACTGAACCAGCTAAGCAGGTTCCGGAAGCTGCCAGTCCTCCTAAAGTTGATTATGCTACTGATCTATTTGACATGCTTTCTATGGATTGTCCAACTGACAATGGCTCAGAAGCAGCTTCTACCGATGATAACTCCTGGGCAGGCTTCCAGTGTATGTCAAGTCACCGTTTTGTTTGAAACGTGATTCTTTCTCTTCCAGTTTGTAACATTTAGAGGGTGTACTTGTCTTTTTCACTAGCATGGTCCATATTTTTCCAAGTGTTTTACTTCTTTTTCTGAGAGAAGACAAGTAGTTTGAGAATCAACAATAACTACACCACAGTTTCAAAAAAAGTTGGGAATGTAAATGAATACTCAGCTGAACTTTTGTCATCATCATACAAAATATATGTAACTGTGAAAAAAGTTAAATATATGAAATAATAATTATATTAGAAGTTCATATATTATGGCATATAAAGCTATGTTAAGGTCAAATACTCCAGTTAAGAATCAACAACTAGTAATTTTTCTTGGCATTTAAATTCAAGTTATCATAGTACCTATTGTTGCTCATTATCTCTTATTAAGTAAGTTGTGCCTTTGCAGCTGCTCAAGAAGCAACAAAAGCAGAAAATACTGGGGTTACAAACTCCGTTGATCAGAAGAAGTCTCAATCTGCTGCTGCTTCTGGAATTGAAGATTTATTCAAGGATTTACCATCAATTGTGCCTTCTGCCTCATCGCAGAAGCCACAGAAAGATGCTAAAAACGATATAATGAGCCTTTTCGACAAGGTACAACACAACAAGAATTTGGATTTTTGGTCATGTCTATCTTTCCTCCTTTATCTAATAACGTTGTTGTCATTTACAGTCCAATATTGTGTCACCTTTTGCTATGCATCAACAACAACTTGCTATGCTGGCGCAACAACAGTCTTTACTGATGGCTGCGGCTGCTGCAGGTGGTGCTGTAAGACTTCCTGTAAATGCACAACAAAGCACTAATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAGGTATAACACGAGTACTATTTATCAAAGATAAAGAGAAAAAAACACACGGATATCTGATTAAATATTGAAATTTTCTTTAAGTTTCTTTACTCAAAGCTGTTTATTTTTCTTCTAAACTAGGTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAGGTATTAACCTCTGATCGTTGTTAGTTAATGTAGAACTTCAACTGTTCTTTGAGGGCCTAATGTTTGGTCTATAAATTCAACAACTTAATCCAATGCATCTATCCTGCCAATTATTTGTCATTAAGATCTCTTAAATTATGACCCCTTAATGCTCAATGTAGTGTATCCATTAACTGTTTCTTCCATTTGATTTAAAGTATCCCTCCTCTTACTCCTCTTGTTAATAATGGGTTGCGGACAGACCCCATTGAACAGTATTTTTTTAATCCATAGCTACATCTCCGGAGGTATATGATCAATTTGCATTGACAAGCTCAGTTGCCAGTCATCTTTGACTTAGTTTAATACTGATGTAGGTTATTGAATCAGTTGAACAAATTTTGATAGTTGTGCTATCTATCGTATCCAGGAGGAACAAATTTTTGGGTGCTAGTTAATTTTTCATCTTTTGATGCTCATAGTTGATCTTTTGTTCTGCAGCTTCTACTCAATGGGACAGAACACTTCCAGCAACGGTATTGTGCCGCCAGGACCAAGCAAGCAAGCAGCTACCCCGATATCATCAAGCTCCACACAGTCAACAAAAGAATTCGACTTTTCATCCTTGACACAGGGTATGTTCACAAAACGCTGAAAAACCAACAAGGAAGCATACTAGCTATTAGTATACAAATTGTTTTTTTTTCCCACAGGAAATTAGCTTTTGTTGTTCTACTCCTGTTTTGGAGATTGTAAACTAAATGTAGAGGACCAAATATTGAGTTTTCTTTAAGGTGATGGCTTGATTTGTATTTTTGTATCTGGAAAAATAAGCTCTCAAAGATTGGATG</genome_strand>
        <mrna_strand>TTTCTCATCCAGTTGCATTTTTCTTTTGATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAA..........................................................................................................................................GGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATT..............................................................................................CAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCGAGCAAA........................................................................................................ATATGAAGAGAAGAGGTGGGTCCCTAAGGATGGGATTCAAAAATCACCTTCCAGGGTTCAAGAAGAGAGGGCTTCGGTGCAATGGCAACAAAACAATGATAGAAGTGGGCGTATACATGCAGCTAGCTCAGGATGTGCATCTGACGAGAGGAAAAATATTCAAGCCTCGAAAGTGAAGCAAGATGTACCTGCTGCTAGAGTCAGTATACCAGTGCCTCCTAGAGGACCAGAGCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTTCAGGTCAGGTTGCTAACCAGACAAGTCAGAAAGCAGAGCCAGTTGCAGTCACTGAACCAGCTAAGCAGGTTCCGGAAGCTGCCAGTCCTCCTAAAGTTGATTATGCTACTGATCTATTTGACATGCTTTCTATGGATTGTCCAACTGACAATGGCTCAGAAGCAGCTTCTACCGATGATAACTCCTGGGCAGGCTTCCAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTCAAGTTACAAACTCCATTGATCAGAAGAAGTCTCAATCTGCTGCTGCTTCTGGAATTGAAGATTTATTCAAGGATTTACCATCAATTGTGCCTTCTGCCTCATCGCAGAAGCCACAGAAAGATGCTAAAAACGATATAATGAGCCTTTTCGACAAG...............................................................................TCCAATATTGTGTCACCTTTTGCTATACATCAACAACAACTTGTTATGCTGGCGCAACAACAGTCTTTACTGATGGCTGCGGCTGCTGCAGGTGGTGCTGTAAGACTTCCTGTAAATGCACAACAAAGCACTAATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAAAGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAG........................................................................................................................GTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTACTCAATGGGACAGAACACTTCCAGCAACGGTATTGTGCCGCCAGGACCAAGCAAGCAAGCAGCTACCCCGATATCATCAAGCTCCACACAGTCAACAAAAGAATTCGACTTTTCATCCTTGACACAGGGTATGTTCACAAAACGCTGAAAAACCAACAAGGAAGCATACTAGCTATTAGTATACAAATTGTTTTTTTTTCCCACAGGAAATTAGCTTTTGTTGTTCTACTCCTGTTTTGGAGATTGTAAACTAAATGTAGAGGACCAAATATTGAGTTTTCTTTAAGGTGATGGCTTGATTTGTATTTTTGTATCTGGAAAAATAAGCTCTCAAAGATTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U316298" ref_strand="+" ref_description="SGN-U316298        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: AT5G54310.1 | Symbol: None | ARF GAP-like zinc finger-containing protein ZIGA3 (ZIGA3), nearly identical to ARF GAP-like zinc finger-containing protein ZIGA3 GI:10441352 from (Arabidopsis thaliana); contains InterPro accession IPR001164: Human Rev interacting-like protein (hRIP) | chr5:22074278-22078457 REVERSE | Aliases: MDK4.13, MDK4_13 (evalue: 7e-41, score=164) genbank/nr: Arf(evalue: 8e-49, score=179)">
      <seq>ttcaggtcaggttgctaaccagacaagtcagaaagcagagccagttgcagtcactgaaccagctaagcaggttccggaagctgccagtcctcctaaagttgattatgctactgatctatttgacatgctttctatggattgtccaactgacaatggctcagaagcagcttctaccgatgataactcctgggcaggcttccagtctgctcaagaagcaacaaaagcagaaaatactggggttacaaactccgttgatcagaagaagtctcaatctgctgctgcttctggaattgaagatttattcaaggatttaccatcaattgtgccttctgcctcatcgcagaagccacagaaagatgctaaaaacgatataatgagccttttcgacaagtccaatattgtgtcaccttttgctatgcatcaacaacaacttgctatgctggcgcaacaacagtctttactgatggctgcggctgctgcaggtggtgctgtaagacttcctgtaaatgcacaacaaagcactaatggcaccaatatggtaaatcagaactggccaaatttaggctatcagttccctggagtgataatgccagcagctggtaagactgagctggagaaatatatgcaggtaggcaatatgggaccagcacatgtagttggaaactctgtgccaattccagcatccagcttctactcaatgggacagaacacttccagcaaacggtattgtgcccgcaggaccaagcaagcaagcagctaccccgatatcatcaagctccacacagtcaacaaaagaattcgacttttcatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="104796" stop="102269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104496" g_stop="104294" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104293" i_stop="103857" i_length="437">
            <donor d_prob="0.663" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103856" g_stop="103669" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="391" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103668" i_stop="103590" i_length="79">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.787" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103589" g_stop="103353" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="628" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103352" i_stop="103233" i_length="120">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103232" g_stop="103174" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="687" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103173" i_stop="102694" i_length="480">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102693" g_stop="102569" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="813" r_length="126" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-U316298" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104496" e_stop="104294"/>
          <exon e_start="103856" e_stop="103669"/>
          <exon e_start="103589" e_stop="103353"/>
          <exon e_start="103232" e_stop="103174"/>
          <exon e_start="102693" e_stop="102569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGGTCAGGTTGCTAACCAGACAAGTCAGAAAGCAGAGCCAGTTGCAGTCACTGAACCAGCTAAGCAGGTTCCGGAAGCTGCCAGTCCTCCTAAAGTTGATTATGCTACTGATCTATTTGACATGCTTTCTATGGATTGTCCAACTGACAATGGCTCAGAAGCAGCTTCTACCGATGATAACTCCTGGGCAGGCTTCCAGTGTATGTCAAGTCACCGTTTTGTTTGAAACGTGATTCTTTCTCTTCCAGTTTGTAACATTTAGAGGGTGTACTTGTCTTTTTCACTAGCATGGTCCATATTTTTCCAAGTGTTTTACTTCTTTTTCTGAGAGAAGACAAGTAGTTTGAGAATCAACAATAACTACACCACAGTTTCAAAAAAAGTTGGGAATGTAAATGAATACTCAGCTGAACTTTTGTCATCATCATACAAAATATATGTAACTGTGAAAAAAGTTAAATATATGAAATAATAATTATATTAGAAGTTCATATATTATGGCATATAAAGCTATGTTAAGGTCAAATACTCCAGTTAAGAATCAACAACTAGTAATTTTTCTTGGCATTTAAATTCAAGTTATCATAGTACCTATTGTTGCTCATTATCTCTTATTAAGTAAGTTGTGCCTTTGCAGCTGCTCAAGAAGCAACAAAAGCAGAAAATACTGGGGTTACAAACTCCGTTGATCAGAAGAAGTCTCAATCTGCTGCTGCTTCTGGAATTGAAGATTTATTCAAGGATTTACCATCAATTGTGCCTTCTGCCTCATCGCAGAAGCCACAGAAAGATGCTAAAAACGATATAATGAGCCTTTTCGACAAGGTACAACACAACAAGAATTTGGATTTTTGGTCATGTCTATCTTTCCTCCTTTATCTAATAACGTTGTTGTCATTTACAGTCCAATATTGTGTCACCTTTTGCTATGCATCAACAACAACTTGCTATGCTGGCGCAACAACAGTCTTTACTGATGGCTGCGGCTGCTGCAGGTGGTGCTGTAAGACTTCCTGTAAATGCACAACAAAGCACTAATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAGGTATAACACGAGTACTATTTATCAAAGATAAAGAGAAAAAAACACACGGATATCTGATTAAATATTGAAATTTTCTTTAAGTTTCTTTACTCAAAGCTGTTTATTTTTCTTCTAAACTAGGTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAGGTATTAACCTCTGATCGTTGTTAGTTAATGTAGAACTTCAACTGTTCTTTGAGGGCCTAATGTTTGGTCTATAAATTCAACAACTTAATCCAATGCATCTATCCTGCCAATTATTTGTCATTAAGATCTCTTAAATTATGACCCCTTAATGCTCAATGTAGTGTATCCATTAACTGTTTCTTCCATTTGATTTAAAGTATCCCTCCTCTTACTCCTCTTGTTAATAATGGGTTGCGGACAGACCCCATTGAACAGTATTTTTTTAATCCATAGCTACATCTCCGGAGGTATATGATCAATTTGCATTGACAAGCTCAGTTGCCAGTCATCTTTGACTTAGTTTAATACTGATGTAGGTTATTGAATCAGTTGAACAAATTTTGATAGTTGTGCTATCTATCGTATCCAGGAGGAACAAATTTTTGGGTGCTAGTTAATTTTTCATCTTTTGATGCTCATAGTTGATCTTTTGTTCTGCAGCTTCTACTCAATGGGACAGAACACTTCCAGC-AACGGTATTGTGCCGCCAGGACCAAGCAAGCAAGCAGCTACCCCGATATCATCAAGCTCCACACAGTCAACAAAAGAATTCGACTTTTCATCCT</genome_strand>
        <mrna_strand>TTCAGGTCAGGTTGCTAACCAGACAAGTCAGAAAGCAGAGCCAGTTGCAGTCACTGAACCAGCTAAGCAGGTTCCGGAAGCTGCCAGTCCTCCTAAAGTTGATTATGCTACTGATCTATTTGACATGCTTTCTATGGATTGTCCAACTGACAATGGCTCAGAAGCAGCTTCTACCGATGATAACTCCTGGGCAGGCTTCCAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTCAAGAAGCAACAAAAGCAGAAAATACTGGGGTTACAAACTCCGTTGATCAGAAGAAGTCTCAATCTGCTGCTGCTTCTGGAATTGAAGATTTATTCAAGGATTTACCATCAATTGTGCCTTCTGCCTCATCGCAGAAGCCACAGAAAGATGCTAAAAACGATATAATGAGCCTTTTCGACAAG...............................................................................TCCAATATTGTGTCACCTTTTGCTATGCATCAACAACAACTTGCTATGCTGGCGCAACAACAGTCTTTACTGATGGCTGCGGCTGCTGCAGGTGGTGCTGTAAGACTTCCTGTAAATGCACAACAAAGCACTAATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAG........................................................................................................................GTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTACTCAATGGGACAGAACACTTCCAGCAAACGGTATTGTGCCCGCAGGACCAAGCAAGCAAGCAGCTACCCCGATATCATCAAGCTCCACACAGTCAACAAAAGAATTCGACTTTTCATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U316296" ref_strand="+" ref_description="SGN-U316296        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT5G54310.1 | Symbol: None | ARF GAP-like zinc finger-containing protein ZIGA3 (ZIGA3), nearly identical to ARF GAP-like zinc finger-containing protein ZIGA3 GI:10441352 from (Arabidopsis thaliana); contains InterPro accession IPR001164: Human Rev interacting-like protein (hRIP) | chr5:22074278-22078457 REVERSE | Aliases: MDK4.13, MDK4_13 (evalue: 2e-22, score=103) genbank/nr: Arf(evalue: 2e-25, score=119)">
      <seq>aagcagagccagttgcagtcactgaaccagctaagcaggttccggaagctgccagtcctcctaaagttgattatgctactgatctatttgacatgctttctatggattgtccaactgacaatggctcagaagcagcttctaccgatgataactcctgggcaggcttccagtctgctcaagaagcaacaaaagcagaaaatactggggttacaaactccgttgatcagaagaagtctcaatctgctgctgcttctggaattgaagatttattcaaggatttaccatcaattgtgccttctgcctcatcgcagaagccacagaaagatgctaaaaacgatataatgagccttttcgacaaggtggtgctgtaagacttcctgtaaatgcacaacaaagcactaatggcaccaatatggtaaatcagaactggccaaatttaggctatcagttccctggagtgataatgccagcagctggtaagactgagctggagaaatatatgcaggtaggcaatatgggaccagcacatgtagttggaaactctgtgccaattccagcatccaggtattaacctctgatcgttgttagttaatgtagaacttcaactgttctttgagggcctaatgtttggtctataaattcaacaacttaatccaatgcatctatcctgccaattatttgtcattaagatctcttaaattatgaccccttaatgctcaatgtagtgtatccattaactgtttcttccatttgatttaaagtatccctcctcttactcctcttgttaataatgggttgcggacagaccccattgaacagtatttttttaatccatagctacatctccggaggtatatgatcaatttgcattgacaagctcagttgccagtcatctttgacttagtttaatactgatgtaggttattgaatcagttgaacaaattttgatagttgtgctatctatcgtatccaggaggaacaaatttttgggtgctagttaatttttcatcttttgatgctcatagttgatcttttgttctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="104764" stop="102396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104464" g_stop="104294" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104293" i_stop="103857" i_length="437">
            <donor d_prob="0.663" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103856" g_stop="103669" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="359" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103668" i_stop="103499" i_length="170">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103498" g_stop="103353" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="505" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103352" i_stop="103233" i_length="120">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103232" g_stop="102696" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="1042" r_length="537" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-U316296" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1042</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104464" e_stop="104294"/>
          <exon e_start="103856" e_stop="103669"/>
          <exon e_start="103498" e_stop="103353"/>
          <exon e_start="103232" e_stop="102696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAGAGCCAGTTGCAGTCACTGAACCAGCTAAGCAGGTTCCGGAAGCTGCCAGTCCTCCTAAAGTTGATTATGCTACTGATCTATTTGACATGCTTTCTATGGATTGTCCAACTGACAATGGCTCAGAAGCAGCTTCTACCGATGATAACTCCTGGGCAGGCTTCCAGTGTATGTCAAGTCACCGTTTTGTTTGAAACGTGATTCTTTCTCTTCCAGTTTGTAACATTTAGAGGGTGTACTTGTCTTTTTCACTAGCATGGTCCATATTTTTCCAAGTGTTTTACTTCTTTTTCTGAGAGAAGACAAGTAGTTTGAGAATCAACAATAACTACACCACAGTTTCAAAAAAAGTTGGGAATGTAAATGAATACTCAGCTGAACTTTTGTCATCATCATACAAAATATATGTAACTGTGAAAAAAGTTAAATATATGAAATAATAATTATATTAGAAGTTCATATATTATGGCATATAAAGCTATGTTAAGGTCAAATACTCCAGTTAAGAATCAACAACTAGTAATTTTTCTTGGCATTTAAATTCAAGTTATCATAGTACCTATTGTTGCTCATTATCTCTTATTAAGTAAGTTGTGCCTTTGCAGCTGCTCAAGAAGCAACAAAAGCAGAAAATACTGGGGTTACAAACTCCGTTGATCAGAAGAAGTCTCAATCTGCTGCTGCTTCTGGAATTGAAGATTTATTCAAGGATTTACCATCAATTGTGCCTTCTGCCTCATCGCAGAAGCCACAGAAAGATGCTAAAAACGATATAATGAGCCTTTTCGACAAGGTACAACACAACAAGAATTTGGATTTTTGGTCATGTCTATCTTTCCTCCTTTATCTAATAACGTTGTTGTCATTTACAGTCCAATATTGTGTCACCTTTTGCTATGCATCAACAACAACTTGCTATGCTGGCGCAACAACAGTCTTTACTGATGGCTGCGGCTGCTGCAGGTGGTGCTGTAAGACTTCCTGTAAATGCACAACAAAGCACTAATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAGGTATAACACGAGTACTATTTATCAAAGATAAAGAGAAAAAAACACACGGATATCTGATTAAATATTGAAATTTTCTTTAAGTTTCTTTACTCAAAGCTGTTTATTTTTCTTCTAAACTAGGTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAGGTATTAACCTCTGATCGTTGTTAGTTAATGTAGAACTTCAACTGTTCTTTGAGGGCCTAATGTTTGGTCTATAAATTCAACAACTTAATCCAATGCATCTATCCTGCCAATTATTTGTCATTAAGATCTCTTAAATTATGACCCCTTAATGCTCAATGTAGTGTATCCATTAACTGTTTCTTCCATTTGATTTAAAGTATCCCTCCTCTTACTCCTCTTGTTAATAATGGGTTGCGGACAGACCCCATTGAACAGTATTTTTTTAATCCATAGCTACATCTCCGGAGGTATATGATCAATTTGCATTGACAAGCTCAGTTGCCAGTCATCTTTGACTTAGTTTAATACTGATGTAGGTTATTGAATCAGTTGAACAAATTTTGATAGTTGTGCTATCTATCGTATCCAGGAGGAACAAATTTTTGGGTGCTAGTTAATTTTTCATCTTTTGATGCTCATAGTTGATCTTTTGTTCTGC</genome_strand>
        <mrna_strand>AAGCAGAGCCAGTTGCAGTCACTGAACCAGCTAAGCAGGTTCCGGAAGCTGCCAGTCCTCCTAAAGTTGATTATGCTACTGATCTATTTGACATGCTTTCTATGGATTGTCCAACTGACAATGGCTCAGAAGCAGCTTCTACCGATGATAACTCCTGGGCAGGCTTCCAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTCAAGAAGCAACAAAAGCAGAAAATACTGGGGTTACAAACTCCGTTGATCAGAAGAAGTCTCAATCTGCTGCTGCTTCTGGAATTGAAGATTTATTCAAGGATTTACCATCAATTGTGCCTTCTGCCTCATCGCAGAAGCCACAGAAAGATGCTAAAAACGATATAATGAGCCTTTTCGACAAG..........................................................................................................................................................................GTGGTGCTGTAAGACTTCCTGTAAATGCACAACAAAGCACTAATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAG........................................................................................................................GTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAGGTATTAACCTCTGATCGTTGTTAGTTAATGTAGAACTTCAACTGTTCTTTGAGGGCCTAATGTTTGGTCTATAAATTCAACAACTTAATCCAATGCATCTATCCTGCCAATTATTTGTCATTAAGATCTCTTAAATTATGACCCCTTAATGCTCAATGTAGTGTATCCATTAACTGTTTCTTCCATTTGATTTAAAGTATCCCTCCTCTTACTCCTCTTGTTAATAATGGGTTGCGGACAGACCCCATTGAACAGTATTTTTTTAATCCATAGCTACATCTCCGGAGGTATATGATCAATTTGCATTGACAAGCTCAGTTGCCAGTCATCTTTGACTTAGTTTAATACTGATGTAGGTTATTGAATCAGTTGAACAAATTTTGATAGTTGTGCTATCTATCGTATCCAGGAGGAACAAATTTTTGGGTGCTAGTTAATTTTTCATCTTTTGATGCTCATAGTTGATCTTTTGTTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U317254" ref_strand="+" ref_description="SGN-U317254        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, . | chr2:8971481-8972511 FORWARD | Aliases: F5H14.21, F5H14_21(evalue: 8e-18, score=87.8) genbank/nr: gi|68299225|emb|CAJ13713.1| hypothetical protein [Capsicum chinense] (evalue: 2e-21, score=106)">
      <seq>gcggcgtggacggcggcggcgaggcaagcagcgaacctatatcgattctcagcttctaaatcagttagctcaacgaagcaaggcgctttacttatccagcggcgcggccttgccggcggtggtgatcatcatggacctccaaaggtgaatttttggcaggatccgatgagtccgtctaaatggaaagaagagcattttgtgatcgtctctcttactggttgggggttggccttctatggaggttataagctcttcacaaagggaaagaaagaggagaaggaagagaaagttggtgaaggatcccactaatatttgacgtgccgaatgccttgaataaagaagttagaaagggctatgtggtcctcaatttttgccatgatgaatattacaatgacttttcccccatttcctccacttcccttgttgggactgaattgcatatgaaatactggacaatcaactatgtaatttctttttttgctttctgtagaatgttggttcatttaggaacattttgcctgctgaggatatgatgtttcttcttgttggaacaactttcgctacccatttgcataatgatcatgagtatgttgaagaaaccacagttttctttatgtgtcgttctaacccatttgaatgtctatgtctgggttgatggagctcaatgagtcagatgcagcaagctcattagcttcgtcaagctgtttctatctgttgtgcttttggtcatttggtgcctctttccatgtatgttaagactatgggagatggtaaaagattacctatttatacaattctagctattgaaggcaggaaactgaatgtaataagttgatagaaacatgtaacattttaagttatggtttttacccaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="109629" stop="113162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109929" g_stop="110052" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110053" i_stop="110962" i_length="910">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110963" g_stop="111033" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="195" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111034" i_stop="111793" i_length="760">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111794" g_stop="111883" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="285" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111884" i_stop="112267" i_length="384">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112268" g_stop="112857" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="875" r_length="590" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="876" polyA_stop="896"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-U317254" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109929" e_stop="110052"/>
          <exon e_start="110963" e_stop="111033"/>
          <exon e_start="111794" e_stop="111883"/>
          <exon e_start="112268" e_stop="112857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCGTGGACGGCGGCGGCGAGGCAAGCAGCGAACCTATATCGATTCTCAGCTTCTAAATCAGTTAGCTCAACGAAGCAAGGCGCTTTACTTATCCAGCGGCGCGGCCTTGCCGGCGGTGGTGGTAAATTAAACTAATTCTCCTGAAATTTATGAAATTTCAATCCGTTCGCAAATTTACTTTCTGCGAGTGAAAGTAATAGTAGATATCCATGGTGTTTGCTTATAATGTTGTGATTCACAGACATTGGATGTTCATATAGGCACTTGTCTTCCTTATTTTCTTTTTTTTTAGTTGTTTTGGAAAATGAAAACTTTTTATGCATATTCTTTGTTTGAGCTGAGTTATGACTATGTAAGCTCGCCTGCAAAAGTCATGTACTAATCTCATTGAGCATAATAATAGTTACTTGGTACTGTTGTACATGATCAACAGTTACAAATGTTTTGCTCTATTTGCTGTGTTTTTTTCATTTATTTCTCGTATAAGTACTGTTGTCTTTTTTGTTTTTACTGATTTGGATTCAAACAAAATGAGCAAGCTGAAGTTTTTATACTACTGGGCTGAGCTTGTAAAATTGGTAAAAGAGAATGCATGTTCTATGGTAACCGGAATTTCCAAAGTTCCATTGCATTTGTTACACACCTCAAAAAACCTTTTTGTCCAATCTAGCAAGATAGAAAATTGTGCACTTCCTATCAATAAAATTTCTACTTTACTTTTTCTACTTAATTCAATATGCAAATTAGACATTTTGTATTGTTTTCTTCATCCTAAATGGCTTACGACCATCTCCATCATTCTATATATTGCTTCCAAGTTTGACTTGGAAAGTGGGGGAAAAGGTTATGTAGAAGAGGTAATCAAAATCCTGGCTTTTTTTTGTGCTCTACCACTAAGAAAACAGTGCAAACATTCAGCTTGGGGAAAAAACAACAACAGTGCAAGCATATGAATGCCACTTACAATTGATTCCAGATGAGGTTGTACTATGAAGTGAGATGATAACTAATATTTTTTCTTTTCAATGCAGATCATCATGGACCTCCAAAGGTGAATTTTTGGCAGGATCCGATGAGTCCGTCTAAATGGAAAGAAGAGCATGTGAGTCTTTCAGACCTTTGTGATGTCTTCTCTACATGTTTAAATTATTTTGGTTGTTGGCTTTGACATTATCAGCTTGCTTCACTTGAAATTTCAGCAATTTGCTATGAAACTCTGAATGCTAGATGTCAGATAGAGAATATTGCCAGTACTTCTAATTTTCACCGATACATGGTTGACAACAAGTTTAAGTGGGGATTGGAGTGCCACTTTTGAATTGGCATTCCAGAAGAGCATAGAGAGTATTCACAGTTCACCTGTGATTGTGGGAAATGATTTTCTCTCTACTACTTATTTCACAATGAAGTTTGACTCTTATCTTTTAGACCACTGCAGAACTTACTCCATATCATATGCAGTTATGGCCCCTGCATATGTCTGTTCAATATCTAGAAAGTTTTACTTATTTTTGTAGGTTCCTTTCATATCTATTACCAAGGTTGGGCCTGTTTTGGATAGGCTCTTCAAAGTACGTATTAGTATAGATTAGATTGACAAAATATGAACTTTTGGCAACTTCAGCTTCTAGTTTTGATTGTGAATCACCAAGGTTTGGAGTCGTATCTATAGTTCTTGATGACTTGAAGTTTTTTCAATTGGGTGCAATGTTATCTGTGGATATAACATGAGTGAATTTGTCAAATTGCTATAAAAATTCACACTGTTTACTGTTGTTAGTGTAATTTGATTTTATTGTTTTGGTTGTAACTTGGAAATAGAAATTCTAGTCTCCAGTTAACCACATCTCTGGTCCTTGTAGTTTGTGATCGTCTCTCTTACTGGTTGGGGGTTGGCCTTCTATGGAGGTTATAAGCTCTTCACAAAGGGAAAGAAAGAGGAGAAGGAAGAGGTATATTCCTCTCACAGCTAGCAACTTCATTCAAATTTTTTGCTGTTGCTGGTAGTGCTAAAGCATATGTTCCGATGTCATTATCTCTTATACGCCCATATTAAAAATGCCTACTGTATCTATTATTATGAAATAAGAATGACATGATAGTAGAAGACCAAATGATCAACCATATCATATGGTTTTACTACATATGCTAGGTAAATCTTACCTTACCTTATGAGATAAATAGGTATATTTGAGTTAACTGAACGTAGCAATTTTGTCATTTGTACAGAGTATATAGACATTTCACCTTGTACAGACTACTATTCTCAAACTGTTCTTCAAATATAATGTTTTCCATATCTAATATCCGATCTGATTTGCTTCATCTTATGACAGAAAGTTGGTGAAGGATCCCACTAATATTTGACGTGCCGAATGCCTTGAATAAAGAAGTTAGAAAGGGCTATGTGGTCCTCAATTTTTGCCATGATGAATATTACAATGACTTTTCCCCCATTTCCTCCACTTCCCTTGTTGGGACTGAATTGCATATGAAATACTGGACAATCAACTATGTAATTTCTTTTTTTGCTTTCTGTAGAATGTTGGTTCATTTAGGAACATTTTGCCTGCTGAGGATATGATGTTTCTTCTTGTTGGAACAACTTTCGCTACCCATTTGCATAATGATCATGAGTATGTTGAAGAAACCACAGTTTTCTTTATGTGTCGTTCTAACCCATTTGAATGTCTATGTCTGGGTTGATGGAGCTCAATGAGTCAGATGCAGCAAGCTCATTAGCTTCGTCAAGCTGTTTCTATCTGTTGTGCTTTTGGTCATTTGGTGCCTCTTTCCATGTATGTTAAGACTATGGGAGATGGTAAAAGATTACCTATTTATACAATTCTAGCTATTGAAGGCAGGAAACTGAATGTAATAAGTTGATAGAAACATGTAACATTTTAAGTTATGGTTTTTACACAAC</genome_strand>
        <mrna_strand>GCGGCGTGGACGGCGGCGGCGAGGCAAGCAGCGAACCTATATCGATTCTCAGCTTCTAAATCAGTTAGCTCAACGAAGCAAGGCGCTTTACTTATCCAGCGGCGCGGCCTTGCCGGCGGTGGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCATGGACCTCCAAAGGTGAATTTTTGGCAGGATCCGATGAGTCCGTCTAAATGGAAAGAAGAGCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATCGTCTCTCTTACTGGTTGGGGGTTGGCCTTCTATGGAGGTTATAAGCTCTTCACAAAGGGAAAGAAAGAGGAGAAGGAAGAG................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTGGTGAAGGATCCCACTAATATTTGACGTGCCGAATGCCTTGAATAAAGAAGTTAGAAAGGGCTATGTGGTCCTCAATTTTTGCCATGATGAATATTACAATGACTTTTCCCCCATTTCCTCCACTTCCCTTGTTGGGACTGAATTGCATATGAAATACTGGACAATCAACTATGTAATTTCTTTTTTTGCTTTCTGTAGAATGTTGGTTCATTTAGGAACATTTTGCCTGCTGAGGATATGATGTTTCTTCTTGTTGGAACAACTTTCGCTACCCATTTGCATAATGATCATGAGTATGTTGAAGAAACCACAGTTTTCTTTATGTGTCGTTCTAACCCATTTGAATGTCTATGTCTGGGTTGATGGAGCTCAATGAGTCAGATGCAGCAAGCTCATTAGCTTCGTCAAGCTGTTTCTATCTGTTGTGCTTTTGGTCATTTGGTGCCTCTTTCCATGTATGTTAAGACTATGGGAGATGGTAAAAGATTACCTATTTATACAATTCTAGCTATTGAAGGCAGGAAACTGAATGTAATAAGTTGATAGAAACATGTAACATTTTAAGTTATGGTTTTTACCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U339859" ref_strand="+" ref_description="SGN-U339859        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, hypothetical protein, Synechocystis sp., PIR2:S77328 | chr4:13703145-13704699 REVERSE | Aliases: F27G19.8(evalue: 2e-23, score=106) genbank/nr: gi|18416979|ref|NP_567772.1| expressed protein [Arabidopsis thaliana] gi|14335172|gb|AAK59866.1| AT4g27390/M4I22_200 [Arabidopsis thaliana] gi|14423404|gb|AAK62384.1| putative protein [Arabidopsis thaliana] gi|15529163|gb|AAK97676.1| AT4g27390/M4I22_200 [Arabidopsis thaliana] gi|16974363|gb|AAL31107.1| AT4g27390/M4I22_200 [Arabidopsis thaliana](evalue: 2e-21, score=106)">
      <seq>agggtctactttaaatgatgaggttcagctttgccctttctgtactcagccattctcagttgttggcaataagttcgtgagagacccagtaacgttctctaaccagtcaactacatttggtcaagcattcggtggtttcagtactcgttctaagaaaggtaagaattcctctgtcggaattgttgatatagaagcagaagttaaggacgcggactaggcagtggtctccagtcatacagtagcatatgggattatgagaagcagcagcagcagctgaacgggaagaagacaagaacataccatatcagtatgaagagaagcttctcacaagcactgtgctgttatgaaataccgaagaacaccacatttagcataggttatcatgcatgactgtacagtcgcgaacacatgatcaacatattatagaataatgctgattatgttagaaaaaagtgtgtgatactattatacttgattgcagttgccctatagtatagcattggataagcttatcatgtttgtgaaaatactttctagcttctcatctgttgattgtattatgatgtagtaaacaataacataccccgtgtaatttgtagttctacaagtgggatctttgaaggttgagatgtatgcacaccttatcctcgcttccctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="115555" stop="112633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115307" g_stop="115305" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115304" i_stop="115255" i_length="50">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115254" g_stop="115199" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="59" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115198" i_stop="114548" i_length="651">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114547" g_stop="114449" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="158" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114448" i_stop="113900" i_length="549">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113899" g_stop="113810" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="248" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113809" i_stop="113332" i_length="478">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113331" g_stop="112933" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="658" r_length="410" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="659" polyA_stop="669"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-U339859" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115307" e_stop="115305"/>
          <exon e_start="115254" e_stop="115199"/>
          <exon e_start="114547" e_stop="114449"/>
          <exon e_start="113899" e_stop="113810"/>
          <exon e_start="113331" e_stop="112933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGCTGGTTGTTTTTGTTAGTTCCTCATAGCATTGATTTTCACCCAATGCAGGTCTACTTTAAATGATGAGGTTCAGCTTTGCCCTTTCTGTACTCAGCCATTCTCAGGTTAAAATTGATTCTCTTAGTTGGCTTGTCTCCCTTGTTTTGCCAACTTCCTCATAGCTGATCAGTTGGTGGCACTCTTGTTTCATTTAGTTACACTATTGTTCTCATATTTGTTTTTAAGAGAGCTGATGGAATTTGCACACAGAACAGATTTATCGAAATTCAACTACCAAATAGCTCGTTTCATATGTGACCCTAAATAAAATTTATGTACCCTGTCTCCACCTCATAATCTTATTCCTTTGTCCCAATGCATATATGCAAGGTAAACCATCAGAAGTTCACAGCTCTTCATGTGGCTTGTTTGAATTGCACTTAGGCTTACTGTATCGAGCTCCCAGTCCTCGATATAAGTAGAGCTTCGTCTATTTCTCTCCATCGTGGTCTTTTGAATCCTTGGACTATATACATATTAGATATTTTTTAATGGTTGTTAAGCACTTGAATGCAACTCAGATGTTGCTAGGCGATAATTAACATCTTGAGAGTGTTGGATGTGTTTGACTTTTCTTTCTGTTATCTTGAACTTCCTTGATGTAAATTGATTTTTTTATCATTTCAAATCTTTGTTCAAACATTGATGTGGGTTATATCATTAGTAACTGATGCAAGCTAAGCTTGTTATTTGAGATATTCCATGCATATTTGCAGTTGTTGGCAATAAGTTCGTGAGAGACCCAGTAACGTTCTCCAACCAGTCAACTACATTTGGTCAAGCATTTGGTGATTTCAGTACTCGTTCTAAGAAAGGTTCATCTTTCTTACTCTTCTTAAAACATTTACTGGTTATGGTTTCCAGGTGCATAATCCATTTACCTAAACTTGGTGCATAATAAGGGCACTAACAGTCTTATCATTCATGAAGTTCTTTTTTCTTCTTTTTTTTTTGGAATATCGTTCATCTGATGAAGTTAATGCTGCCTCTCCTGTAAATAAGCTCGACTTTTGCAGTTCTCCTTCTGGAGAGTTATGAATTTCTTCAAGAAAGAAAACTTTCTTTTCTAATTTCTTTGGGATCCTTATGTACTCTATGAGTGCGGGGATTCAAATATTTACTTGAGATTAAAGCATTTAAAAGGCTTAAAATTCCAAGCGAACTTCATTTATGTTTCTTCTCATCACACGTTTTTGTGATAAACTTCAAATAATCCTCGTAAGAATTGATTTAACTGCTAGACCGCGGAATACTGACAAAGTTTGTGCAATTTTAGGCCATTACGGTTTTAAATCATGATCCTAGGACTGTCCCATAATATATCTGGATTAGAACTTACTTCACCTCATCTATTTACTTTACAGGTAAGAATTCCTCTGTCGGAATTGTTGATATAGAAGCAGAAGTTAAGGACGCGGACTAGGCAGTGGTCTCCAGTCATACAGTAGCATATGGTAAAGCACTCAGATTATTTTTGCATCTTTGCCTATGCATGTGAATTGTGATGGACAAAACAGTTCAAATAAAACTGTACCTTCAAAATTTGTCTTTTTATTTGGAAAGAAAGTCCATGCACAATCGTTTTGTTGTTAGTCTGTAATGACTCCATAGGCTACCAGTGTAGAAACGATGTCGATAATAGAACTGTTTGGACACGGTGTATAATCTGTGTTTTCTGTCTATCTCTGCTATCCTCACACGGGGAGGGGGTGGGGGGTGGGGTGTTCAGAATTGACCTATACTATAGTTGTTATCGTTGGCTTCTGGTATGACATAATTTGCTGTATATAATTGATTTGAACGTAGACATTATACAGCTTCCCAAGATAACAACATGGATGTTGATTTGTTCTTTTAGCAGTCCTTTGTTGGTCTTGTCCTATTATGTATGAGGCTGCTTCTTTTTCTTCTTTCATAAAAATCATCATCTAGGGATTATGAGAAGCAGCAGCAGCAGCTGAACGGGAAGAAGACAAGAACATACCATGTCAGTATGAAGAGAAGCTTCTCACAAGCACTGTGCTGTTATGAAATACTAAAGAACACCACGTTTAGCATAGGTTATCATGCATGACTGTACAGTCGCGAACACATAATCAACATATTATAGAGTATTGCTGATTATGTTAGAAAAAAGTGT-TG-----ATTGCAGTTG-CCCCA-TAG---TATACCATAGCATTGGATAAGCTTATCATGTTTGTGAAAATACTTTCTAGCTTCTCATCTGTTGATTGTATTATGATGTAGTAAACAATAACATACCCCGTGTAATTTGTAGTTCTACAAGTGGGATCTTTGAAGGTTGGGATGTATGCACACCTTATCCTCGCTTTCCTA</genome_strand>
        <mrna_strand>AGG..................................................GTCTACTTTAAATGATGAGGTTCAGCTTTGCCCTTTCTGTACTCAGCCATTCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGGCAATAAGTTCGTGAGAGACCCAGTAACGTTCTCTAACCAGTCAACTACATTTGGTCAAGCATTCGGTGGTTTCAGTACTCGTTCTAAGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGAATTCCTCTGTCGGAATTGTTGATATAGAAGCAGAAGTTAAGGACGCGGACTAGGCAGTGGTCTCCAGTCATACAGTAGCATATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTATGAGAAGCAGCAGCAGCAGCTGAACGGGAAGAAGACAAGAACATACCATATCAGTATGAAGAGAAGCTTCTCACAAGCACTGTGCTGTTATGAAATACCGAAGAACACCACATTTAGCATAGGTTATCATGCATGACTGTACAGTCGCGAACACATGATCAACATATTATAGAATAATGCTGATTATGTTAGAAAAAAGTGTGTGATACTATTATACTTGATTGCAGTTGCCCTATAGTATAGCATTGGATAAGCTTATCATGTTTGTGAAAATACTTTCTAGCTTCTCATCTGTTGATTGTATTATGATGTAGTAAACAATAACATACCCCGTGTAATTTGTAGTTCTACAAGTGGGATCTTTGAAGGTTGAGATGTATGCACACCTTATCCTCGCTTCCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U339858" ref_strand="-" ref_description="SGN-U339858        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tatactatagttgttatcgttggcttctggtatgacataatttgctgtatataattgatttgaacgtagacattatacagcttcccaagataacaacatggatgttgatttgttcttttagcagtcctttgttggtcttgtcctattatgtatgaggctgcttctttttcttctttcataaaaatcatcatctagggattatgagaagcagcagcagcagctgaacgggaagaagacaagaacataccatgtcagtatgaagagaagcttctcacaagcactgtgctgttatgaaatactaaagaacaccacgtttagcataggttatcatgcatgactgtacagtcgcgaacacataatcaacatattatagagtattgctgattatgttagaaaaaagtgttgattgcagttgccccatagtataccaatagcattggataagcttatcatgtttgtgaaaatactttctagcttctcatctgttgattgtattatgatgtagtaaacaataacataccccgtgtaatttgtagttctacaagtgggatctttgaaggttgggatgtatgcaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="113826" stop="112652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113526" g_stop="112961" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="574" polyA_stop="595"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-U339858" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339858" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113526" e_stop="112961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACTATAGTTGTTATCGTTGGCTTCTGGTATGACATAATTTGCTGTATATAATTGATTTGAACGTAGACATTATACAGCTTCCCAAGATAACAACATGGATGTTGATTTGTTCTTTTAGCAGTCCTTTGTTGGTCTTGTCCTATTATGTATGAGGCTGCTTCTTTTTCTTCTTTCATAAAAATCATCATCTAGGGATTATGAGAAGCAGCAGCAGCAGCTGAACGGGAAGAAGACAAGAACATACCATGTCAGTATGAAGAGAAGCTTCTCACAAGCACTGTGCTGTTATGAAATACTAAAGAACACCACGTTTAGCATAGGTTATCATGCATGACTGTACAGTCGCGAACACATAATCAACATATTATAGAGTATTGCTGATTATGTTAGAAAAAAGTGTTGATTGCAGTTGCCCCATAGTATACC-ATAGCATTGGATAAGCTTATCATGTTTGTGAAAATACTTTCTAGCTTCTCATCTGTTGATTGTATTATGATGTAGTAAACAATAACATACCCCGTGTAATTTGTAGTTCTACAAGTGGGATCTTTGAAGGTTGGGAT</genome_strand>
        <mrna_strand>TATACTATAGTTGTTATCGTTGGCTTCTGGTATGACATAATTTGCTGTATATAATTGATTTGAACGTAGACATTATACAGCTTCCCAAGATAACAACATGGATGTTGATTTGTTCTTTTAGCAGTCCTTTGTTGGTCTTGTCCTATTATGTATGAGGCTGCTTCTTTTTCTTCTTTCATAAAAATCATCATCTAGGGATTATGAGAAGCAGCAGCAGCAGCTGAACGGGAAGAAGACAAGAACATACCATGTCAGTATGAAGAGAAGCTTCTCACAAGCACTGTGCTGTTATGAAATACTAAAGAACACCACGTTTAGCATAGGTTATCATGCATGACTGTACAGTCGCGAACACATAATCAACATATTATAGAGTATTGCTGATTATGTTAGAAAAAAGTGTTGATTGCAGTTGCCCCATAGTATACCAATAGCATTGGATAAGCTTATCATGTTTGTGAAAATACTTTCTAGCTTCTCATCTGTTGATTGTATTATGATGTAGTAAACAATAACATACCCCGTGTAATTTGTAGTTCTACAAGTGGGATCTTTGAAGGTTGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U317611" ref_strand="+" ref_description="SGN-U317611        Tomato 200607 #1 [20 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam profile PF03619: Domain of unknown function | chr4:11470901-11472905 REVERSE | Aliases: F17L22.30(evalue: 4e-108, score=388) genbank/nr: gi|15234526|ref|NP_193888.1| expressed protein [Arabidopsis thaliana] gi|7485716|pir||T05165 hypothetical protein F18E5.190 - Arabidopsis thaliana gi|3080401|emb|CAA18721.1| putative protein [Arabidopsis thaliana] gi|4455265|emb|CAB36801.1| putative protein [Arabidopsis thaliana] gi|7268954|emb|CAB81264.1| putative protein [Arabidopsis thaliana] gi|20260134|gb|AAM12965.1| putative protein [Arabidopsis thaliana] gi|21386967|gb|AAM47887.1| putative protein [Arabidopsis thaliana](evalue: 3e-106, score=388)">
      <seq>gaatattattcacaagaatcccaacaatttgttcattgcatttgacgcccatttctagagactttgtttgattttggttttcttgttggctaacaacaaatatggaattggatctggatcgtgggcaagtcacactgatagcatccagtatatgtcttatgctgactttacatttcagcatacagctagtgacagaacattttacgtcatggaagaagcctaaagagcaaaaggccataattattatcgtcctcatggcacctttgtatgctattgtctccttcattgggttggtcgatttcatgggaagcaaaccctttttcactttcttggaatctgtcaaagaatgttatgaagcaattgtgatggctaagttcctggggttgatgtacacttacttgaatatatccataagcaaaaacatagtccctgatgaaattaagggaagacagattcaccactcattcccaatgacactcttccagcctcacactgctcatttgaaccatcatacattgaagcttctcaagaactggacatggcagtttgttgtgattcgccctgtatgctctattttaatgattgttttacaaatgtttggagtgtaccctagttgggttagctggacctttaccatcattttaaacatatccgtttcactggcattgtactctcttgtggttttctaccacgtgtttgcgaaggagttggcgcctcacaagccactagccaagttcctgtgtgtcaaaggaattgtctttttcgtcttctggcagggcattctgcttagtgttctggtatcactaggcataataaaatctcactatttctggcttgaggtggagcgccttcaggaaggtatgcagaatgaactagtgatcctggagatggttttcttcgctatccttatgcgtcatgcatacagtgcagcgccatatcgcgcagaagctgttacaactacttcagaagatgctacttctggagataaaaagaatgagtgattatgcaacatgtattgttgtaaaaaaattatcttcagacatcactcacttcctcatattgcttgtatgttatgttggatttgcttgttgatgttataatagattcctactacagatcaactagaacattttgtgagtgttaattagcactgaatccctttcattctgaggcaatgaatacttcatttgaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="122590" stop="118394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122290" g_stop="122226" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122225" i_stop="120842" i_length="1384">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120841" g_stop="120545" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="362" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120544" i_stop="120443" i_length="102">
            <donor d_prob="0.530" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120442" g_stop="120320" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="485" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120319" i_stop="119910" i_length="410">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119909" g_stop="119619" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="776" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119618" i_stop="119123" i_length="496">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119122" g_stop="118691" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="1208" r_length="432" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-U317611" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1208</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122290" e_stop="122226"/>
          <exon e_start="120841" e_stop="120545"/>
          <exon e_start="120442" e_stop="120320"/>
          <exon e_start="119909" e_stop="119619"/>
          <exon e_start="119122" e_stop="118691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATTATTCACAAGAATCCCAACAATTTGTTCATTGCATTTGACGCCCATTTCTAGAGACTTTGTAAGTACTTGTCTTTCTCTTTCTTACCCTTTTTTCCTCTCTTCTTTAGCTCCTACACTCATTAGCTATACTTTTTATGTTGAAGTCATTATGTATTTTGTTGGGATTAACCATAAGAAGTCACTTATGTAGATATTTTACTTGTTTAGATTACAATATTGTTGAAAGATCAAATTTTTACTTTTCTTGAAAATGTTGCATCGGTTTTTTAGTGCAGCAGCTGGATCCTTGATGTTTTTTTCTTGGGTGAATCTTGAAATAACCATGATTGTGTTGTAGCCTAGCTAGTTTCAATATAGCTTGTTTGAGTTCAAATTGGCCTTGTGATTTGTAAAGGGTTTGTCTTTTTGATGATTTTTAGGTCATAAAAGTACAAGGTCAACAGCTGAGGAAACTAGAGGTGAGGCAGAGTGATTAGCTTAGTTTGTAATTTCATATTGTTCTTGGGCAAAAGACCCAAAAGTTACTCACTGAGGCACTCACTGTTAGCTAAAATATCATCCATACTAGTGGGGTTACACCGGAAGGTAGGATGCGTACATCCTACTCCGACCTCACTTTGGGATTACACAGGGTATGCTGTTTTGTCGTTGTACTAGTGATAGATACTATGATACTTTGGATTCCTCATATTTCTCATTGTAGCAAGGACTAAGTATTGATGTCTATAAGTACTCTTTTATTTTAACCTTTCCACTTACCTTAACTCTATCTTGAGCTCATTAACAGATTTGTTCTATTACTGTGAGCATGTGAAAAAGAAATCTTTTATGGTAATTTATCATTGATTGGGTGCCAATTAAGAACTGCGAGCACTATTAAGTCATGTTTTACCAGATGGCTTAATTTAGATTGATTGGTTAACGGAGCTATATCCAATTATTGATCCAAAATGGGATGGATTGGGAACATTGAGTGCCTCTGAAGGGTTAGTTTAGGTCATGAATGAGTCAATCTGCCCTTCTTGTTAAAACATCAAGTTGAAGACCGAAGACAAAGCTGGGTTGTCCTCGCAAGTATAACCTTTCAGATAACGAATGATGATATAATTGGGTTAAAACTGTCTGTATGAGAAGTCAGTGTTACAGATTTGTCATTTGGGTTTCTCAATTGTTGCAAGTGGAAGTGGTGATATATCCTGGTTGTTGACATGAGTGAAGGTCGAGGAATAGAAATGAAATTTGGTGGAATGAATTAAATGATGGTGGATTGGTGGCTATCTAAATAAATCAGTAGATATGAATTTTGGGTAATAATGAAAGTTGTACTTCTGTATACAAATGAAATTCTTGTCTATTTTATTTCCCTACATTTCTCTTGAAATATAAAAGCTTAACTCGAAATGTGCAATTTAGTCCTGATAAGTCTTAACACCACTGTGCAGGTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATTGTAAGTATAGCCAAGTTAACATTTTCTGCGTGTATCAAGCATCACTTGTTGAGTTGTGTTCTTGTCAGAATTCTTTGCTCACTTGTGTTCTATGTGATACAGGTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAGGTACAACGTGTAATCTAAAGTTATGTGTACATATCACTCTTATATATCATCAACATTGCATGCTTATGAGAAAATTACGATGATGCCAACAAGGATGAAAACTAAATTACATTGTGTTCAGCATGCCTTATAGAGTATATATACTGTTAAGCACAGAGTTGCACTATTTCAATCCTTTTGCACCGATGTATAGGCACACTCCTGCATTGAGTTGCTTACTAAGTTTACATGGACAAATTATCATTACTGTGTAGTATGTTTACAAACTCAGATGTTAGGCTTATAAGTATTCAGTGCTCTCTTTCTTTTCTCTTTGAGACCAAAAAGCATGATGCCTCATAGAAGCTTACATATACAGTTTTAGTGTTGTCATGGTACTCGGTCACAAGCTAACTGTTGTGTCACTGCAGCCTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACATATCCGTTTCACTGGCATTGTACTCTCTTGTGGTTTTCTACCACGTGTTTGCGAAGGAGTTGGCGCCTCACAAGCCACTAGCCAAGTTCCTGTGTGTCAAAGGAATTGTCTTTTTCGTCTTCTGGCAGGTACGTCTCTCACCTTTTCTTGCAATCTTATCTTTTGCTTTCTTGTAATTTACATGTTGGATTTCAAATTTTGCTGCTATTTGCATTGTGGGACCTGAATTTTTTGATTAGCATGTTCCACATCAACAACGAACCTAGTGTAGTTCCACAAGTGAGGTCTAGGGAGGGTGGTGCATATGCAACCATAATTCCACCTTGTAAAGGTAGAGAGAAGGCTGTTTTCTAATAGTATAAAAATCAAACCATCAGTGCTAAATTTCTTTTTGAAGTCTGCTAGCATGTTCTACAACAACAATGAAACTAAGTGTAATCCCACAGTAGGGTCTGGGAAGAGTGGTGTGTGTGCAGCCTTACCCCTATATCTTTAAAGATAGAGAAGATGTTTCCACTAGACTCGCAACTCATCAGAATGTACTATATTTCCAAATGAAAATCAAATATTAATATCTGCTTTTACATTTTGTTATGCTAAAAAGAAACTTGTACCATTCTGCAGGGCATTCTGCTTAGTGTTCTGGTATCACTAGGCATAATAAAATCTCACTATTTCTGGCTTGAGGTGGAGCGCCTTCAGGAAGGTATGCAGAATGAACTAGTGATCCTGGAGATGGTTTTCTTCGCTATCCTTATGCGTCATGCATACAGTGCAGCGCCATATCGCGCAGAAGCTGTTACAACTACTTCAGAAGATGCTACTTCTGGAGATAAAAAGAATGAGTGATTATGCAACATGTATTGTTGTAAAAAAATTATCTTCAGACATCACTCACTTCCTCATATTGCTTGTATGTTATGTTGGATTTGCTTGTTGATGTTATAATAGATTCCTACTACAGATCAACTAGAACATTTTGTGAGTGTTAATTAGCACTGAATCCCTTTCATTCTGAGGCAATGAATACTTCATTTGAAATAAAACAGAGAAGCA</genome_strand>
        <mrna_strand>GAATATTATTCACAAGAATCCCAACAATTTGTTCATTGCATTTGACGCCCATTTCTAGAGACTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATT......................................................................................................GTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................CCTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACATATCCGTTTCACTGGCATTGTACTCTCTTGTGGTTTTCTACCACGTGTTTGCGAAGGAGTTGGCGCCTCACAAGCCACTAGCCAAGTTCCTGTGTGTCAAAGGAATTGTCTTTTTCGTCTTCTGGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTCTGCTTAGTGTTCTGGTATCACTAGGCATAATAAAATCTCACTATTTCTGGCTTGAGGTGGAGCGCCTTCAGGAAGGTATGCAGAATGAACTAGTGATCCTGGAGATGGTTTTCTTCGCTATCCTTATGCGTCATGCATACAGTGCAGCGCCATATCGCGCAGAAGCTGTTACAACTACTTCAGAAGATGCTACTTCTGGAGATAAAAAGAATGAGTGATTATGCAACATGTATTGTTGTAAAAAAATTATCTTCAGACATCACTCACTTCCTCATATTGCTTGTATGTTATGTTGGATTTGCTTGTTGATGTTATAATAGATTCCTACTACAGATCAACTAGAACATTTTGTGAGTGTTAATTAGCACTGAATCCCTTTCATTCTGAGGCAATGAATACTTCATTTGAAATAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7ujxF2/lycopersicum_combined_unigene_seqs" ref_id="SGN-U344341" ref_strand="+" ref_description="SGN-U344341        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ttctttagctcctacactcattagctatactttttatgttgaagtcattatgtattttgttgggattaaccataagaagtcacttatgtagatattttacttgtttagattacaatattgttgaaagatcaaatttttacttttcttgaaaatgttgcatcggttttttagtgcagcagctggatccttgatgtttttttcttgggtgaatcttgaaataaccatgattgtgttgtagcctagctagtttcaatatagcttgtttgagttcaaattggccttgtgatttgtaaagggtttgtctttttgatgatttttaggtcataaaagtacaaggtcaacagctgaggaaactagaggggaggcagagtgattagcttagtttgtaatttcatattgttcttgggcaaaagacccaaaagttactcactgaggcactcactgttagctaaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-MYGmh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="122484" stop="121428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122184" g_stop="121728" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-U344341" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122184" e_stop="121728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTAGCTCCTACACTCATTAGCTATACTTTTTATGTTGAAGTCATTATGTATTTTGTTGGGATTAACCATAAGAAGTCACTTATGTAGATATTTTACTTGTTTAGATTACAATATTGTTGAAAGATCAAATTTTTACTTTTCTTGAAAATGTTGCATCGGTTTTTTAGTGCAGCAGCTGGATCCTTGATGTTTTTTTCTTGGGTGAATCTTGAAATAACCATGATTGTGTTGTAGCCTAGCTAGTTTCAATATAGCTTGTTTGAGTTCAAATTGGCCTTGTGATTTGTAAAGGGTTTGTCTTTTTGATGATTTTTAGGTCATAAAAGTACAAGGTCAACAGCTGAGGAAACTAGAGGTGAGGCAGAGTGATTAGCTTAGTTTGTAATTTCATATTGTTCTTGGGCAAAAGACCCAAAAGTTACTCACTGAGGCACTCACTGTTAGCTAAAATAT</genome_strand>
        <mrna_strand>TTCTTTAGCTCCTACACTCATTAGCTATACTTTTTATGTTGAAGTCATTATGTATTTTGTTGGGATTAACCATAAGAAGTCACTTATGTAGATATTTTACTTGTTTAGATTACAATATTGTTGAAAGATCAAATTTTTACTTTTCTTGAAAATGTTGCATCGGTTTTTTAGTGCAGCAGCTGGATCCTTGATGTTTTTTTCTTGGGTGAATCTTGAAATAACCATGATTGTGTTGTAGCCTAGCTAGTTTCAATATAGCTTGTTTGAGTTCAAATTGGCCTTGTGATTTGTAAAGGGTTTGTCTTTTTGATGATTTTTAGGTCATAAAAGTACAAGGTCAACAGCTGAGGAAACTAGAGGGGAGGCAGAGTGATTAGCTTAGTTTGTAATTTCATATTGTTCTTGGGCAAAAGACCCAAAAGTTACTCACTGAGGCACTCACTGTTAGCTAAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>35</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="14598" PGL_stop="15062"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14598" e_stop="15062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14598" e_stop="15062" e_length="465"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14598" stop="15062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345879" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATTTAGGCATGGTTACTTTGGATTGAAGGCAACGCGTTGGAACTGATAGACGAATGTATCAAAGAATCCTTTTCAGAATCTCAAGTGTTGAGATGCATCCAGGTTGGTTTGTTATGCGTCCAAAAACTCCCCGAGGATAGGCCTACAATGGCATCAGTAGTTTTCTGGTTAGGCAATGAAGGTCTGGTTCTTCCTCAACCAAAGCGACCTGGTTTTTTCATTGAGAGGAATTCAATGGATTCAACTAAATCATCAACTGATGAAGGATATTTAAGTAACAACGTATCGATAACAATCCTGGAGCCAAGATAGATATAAGTTCCAATAATTGGAACTTTTGAAATGTATTCACTTTGTCCTGTTTTGTCAAACACTGATAGTGTATATGTGACTATATATGAGGTGAATTGACATGTATTCTTTCTGTACAATAAGAGATGTAATGAATTTGCCTATTCTGAGT</gDNA_template>
            <first_frame> *  F  R  H  G  Y  F  G  L  K  A  T  R  W  N  *  *  T  N  V  S  K  N  P  F  Q  N  L  K  C  *  D  A  S  R  L  V  C  Y  A  S  K  N  S  P  R  I  G  L  Q  W  H  Q  *  F  S  G  *  A  M  K  V  W  F  F  L  N  Q  S  D  L  V  F  S  L  R  G  I  Q  W  I  Q  L  N  H  Q  L  M  K  D  I  *  V  T  T  Y  R  *  Q  S  W  S  Q  D  R  Y  K  F  Q  *  L  E  L  L  K  C  I  H  F  V  L  F  C  Q  T  L  I  V  Y  M  *  L  Y  M  R  *  I  D  M  Y  S  F  C  T  I  R  D  V  M  N  L  P  I  L  S </first_frame>
            <second_frame>  N  L  G  M  V  T  L  D  *  R  Q  R  V  G  T  D  R  R  M  Y  Q  R  I  L  F  R  I  S  S  V  E  M  H  P  G  W  F  V  M  R  P  K  T  P  R  G  *  A  Y  N  G  I  S  S  F  L  V  R  Q  *  R  S  G  S  S  S  T  K  A  T  W  F  F  H  *  E  E  F  N  G  F  N  *  I  I  N  *  *  R  I  F  K  *  Q  R  I  D  N  N  P  G  A  K  I  D  I  S  S  N  N  W  N  F  *  N  V  F  T  L  S  C  F  V  K  H  *  *  C  I  C  D  Y  I  *  G  E  L  T  C  I  L  S  V  Q  *  E  M  *  *  I  C  L  F  *   </second_frame>
            <third_frame>   I  *  A  W  L  L  W  I  E  G  N  A  L  E  L  I  D  E  C  I  K  E  S  F  S  E  S  Q  V  L  R  C  I  Q  V  G  L  L  C  V  Q  K  L  P  E  D  R  P  T  M  A  S  V  V  F  W  L  G  N  E  G  L  V  L  P  Q  P  K  R  P  G  F  F  I  E  R  N  S  M  D  S  T  K  S  S  T  D  E  G  Y  L  S  N  N  V  S  I  T  I  L  E  P  R  *  I  *  V  P  I  I  G  T  F  E  M  Y  S  L  C  P  V  L  S  N  T  D  S  V  Y  V  T  I  Y  E  V  N  *  H  V  F  F  L  Y  N  K  R  C  N  E  F  A  Y  S  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14606" stop="14911"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AWLLWIEGNALELIDECIKESFSESQVLRCIQVGLLCVQKLPEDRPTMASVVFWLGNEGLVLPQPKRPGFFIERNSMDSTKSSTDEGYLSNNVSITILEPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="18478" PGL_stop="19240"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18478" e_stop="19240"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="18478" e_stop="19240" e_length="763"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18478" stop="19240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328396" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAACACATACACACACAACATCTCTTTAGTGATCGCGAGAAATGGAAGATCCTTATGGATTTGAAGATCATTTCCCTTCAATGATGGAGAGATTAGGCGCGGAAGGATTCATGAGGGAGCTTTGCAATGGATTTTGTTTACTTATGGATGTGAGTATAGGGCTAATAACATATGAAAGTTTGAAGAGAAACACTATGAATCTTGGTTTAAATGATTTAAGAGATGATGAGTTGATTTACATGTTGGCTGAAGGAGATTTGGATGGTGATGGAGCACTTAATCAAATGGAATTTTGTATTCTCATGTTTAGATTGAGTCCTGGTTTAATGGATGGATCTAAGCAATACATGGATGATGTGGGGCTTATTCATTTCCAACCCTAACTAGGTTTTTTATTAATTCCTTAATTTGTGTGTTTTATTGATGTAACTTGTATTAATATCATGAGAGATATGATGATGATGATGATGAAGATCTTATGCCAAATAAATAATTCTCCATGTATATCTATTTGTGTGTGTTGATTTGAAGGAGTGATGATTATTAATTATCAAACTACAATATCAGGCATTTCCAACTTCATAATGTTTCATCTTTTGTACGTTTGTTCAGTAAAATAATGAAGGATATGCCTTATTAATGGGGAATAGATGAAAGGGTTTGTTATATGTTGTCTAGGTCGATTAGAAGGTGTAAAAACATCTCGATTCTTTTTAAATTATTTTATTTTGGGATGGATGACTAATTTGGGGCTTATGATTC</gDNA_template>
            <first_frame> T  T  H  T  H  T  T  S  L  *  *  S  R  E  M  E  D  P  Y  G  F  E  D  H  F  P  S  M  M  E  R  L  G  A  E  G  F  M  R  E  L  C  N  G  F  C  L  L  M  D  V  S  I  G  L  I  T  Y  E  S  L  K  R  N  T  M  N  L  G  L  N  D  L  R  D  D  E  L  I  Y  M  L  A  E  G  D  L  D  G  D  G  A  L  N  Q  M  E  F  C  I  L  M  F  R  L  S  P  G  L  M  D  G  S  K  Q  Y  M  D  D  V  G  L  I  H  F  Q  P  *  L  G  F  L  L  I  P  *  F  V  C  F  I  D  V  T  C  I  N  I  M  R  D  M  M  M  M  M  M  K  I  L  C  Q  I  N  N  S  P  C  I  S  I  C  V  C  *  F  E  G  V  M  I  I  N  Y  Q  T  T  I  S  G  I  S  N  F  I  M  F  H  L  L  Y  V  C  S  V  K  *  *  R  I  C  L  I  N  G  E  *  M  K  G  F  V  I  C  C  L  G  R  L  E  G  V  K  T  S  R  F  F  L  N  Y  F  I  L  G  W  M  T  N  L  G  L  M  I  </first_frame>
            <second_frame>  Q  H  I  H  T  Q  H  L  F  S  D  R  E  K  W  K  I  L  M  D  L  K  I  I  S  L  Q  *  W  R  D  *  A  R  K  D  S  *  G  S  F  A  M  D  F  V  Y  L  W  M  *  V  *  G  *  *  H  M  K  V  *  R  E  T  L  *  I  L  V  *  M  I  *  E  M  M  S  *  F  T  C  W  L  K  E  I  W  M  V  M  E  H  L  I  K  W  N  F  V  F  S  C  L  D  *  V  L  V  *  W  M  D  L  S  N  T  W  M  M  W  G  L  F  I  S  N  P  N  *  V  F  Y  *  F  L  N  L  C  V  L  L  M  *  L  V  L  I  S  *  E  I  *  *  *  *  *  *  R  S  Y  A  K  *  I  I  L  H  V  Y  L  F  V  C  V  D  L  K  E  *  *  L  L  I  I  K  L  Q  Y  Q  A  F  P  T  S  *  C  F  I  F  C  T  F  V  Q  *  N  N  E  G  Y  A  L  L  M  G  N  R  *  K  G  L  L  Y  V  V  *  V  D  *  K  V  *  K  H  L  D  S  F  *  I  I  L  F  W  D  G  *  L  I  W  G  L  *  F </second_frame>
            <third_frame>   N  T  Y  T  H  N  I  S  L  V  I  A  R  N  G  R  S  L  W  I  *  R  S  F  P  F  N  D  G  E  I  R  R  G  R  I  H  E  G  A  L  Q  W  I  L  F  T  Y  G  C  E  Y  R  A  N  N  I  *  K  F  E  E  K  H  Y  E  S  W  F  K  *  F  K  R  *  *  V  D  L  H  V  G  *  R  R  F  G  W  *  W  S  T  *  S  N  G  I  L  Y  S  H  V  *  I  E  S  W  F  N  G  W  I  *  A  I  H  G  *  C  G  A  Y  S  F  P  T  L  T  R  F  F  I  N  S  L  I  C  V  F  Y  *  C  N  L  Y  *  Y  H  E  R  Y  D  D  D  D  D  E  D  L  M  P  N  K  *  F  S  M  Y  I  Y  L  C  V  L  I  *  R  S  D  D  Y  *  L  S  N  Y  N  I  R  H  F  Q  L  H  N  V  S  S  F  V  R  L  F  S  K  I  M  K  D  M  P  Y  *  W  G  I  D  E  R  V  C  Y  M  L  S  R  S  I  R  R  C  K  N  I  S  I  L  F  K  L  F  Y  F  G  M  D  D  *  F  G  A  Y  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18511" stop="18861"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SREMEDPYGFEDHFPSMMERLGAEGFMRELCNGFCLLMDVSIGLITYESLKRNTMNLGLNDLRDDELIYMLAEGDLDGDGALNQMEFCILMFRLSPGLMDGSKQYMDDVGLIHFQP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="24721" PGL_stop="21269"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24721" e_stop="23844"/>
            <exon e_start="21523" e_stop="21269"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="0.984"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="24721" e_stop="23844" e_length="878"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="23843" i_stop="21524" i_length="2320"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="21523" e_stop="21269" e_length="255"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24721" stop="23844"/>
              <exon start="21523" stop="21269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321053" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAATCAATTATTCCCCTTCTAGATTCTCTCATATTCCTCCTCCTCCTTCTTCTTCATCATCAAATAGAGCAATTCTCGCTGCCATAGCGATAAACAAGCATCAAATCAAACAAACAAAATCAATTCAAAAGAAAAAAAAGGTCAACTCCCCTAAGAATGCAGCAACAACCCCCATCCCCCACCCCCGATTCCGATCTCCCCCGTCTAGCTAACATCAAAATCAAATCATCTTCTCCACGTTTTCCCCCACCCACCACCCCTTCCATCACTGATACACCTACCGCCGGAGCTCAGCGGAGGATCGGAATCGCCGTCGATCTAAGCGACGAGTCTGCTTTCGCCGTTAAGTGGGCTGTGAATCAGTACCTCCGTCCTGGTGACGCTGTTATCCTTGTTCACGTCCGTCCAACTTCCGTACTCTACGGTGCTGATTGGGGATCTGTTGAGCTATCTATTGTTGATACGGAGAATGAGGAGAGTCAGAGGAAGCTTGAGGATGATTTCGATACGTTTACTACTACTAAAGCGTCTGATTTAGCTCAGCCTTTGGTTGATGCTCAGATTCCGTTTAAGATCCATATTGTTAAGGATCATGATATGAGGGAGAGGTTGTGTCTTGAGGTTGAGAGGTTAGGGCTTAGTGCTGTTATTATGGGGAGTCGAGGATTTGGAGCTACGAAGAGGGGGAGTGATGGAAGACTTGGGAGTGTTAGTGATTATTGTGTTAGGCACTGTGTGTGTCCTGTTGTGGTTGTTAGGTATCCCGATGATAAGGATGCTGGAAATGCTGTTGTAGAGCCCGTGGTTTCTGTTGCTTCAGCTGCTGAAGAAGACGAGGAGGAAGCTGAGTACCATGATGCTTCTGAGGATCGAAAAG : ATTCATAATGAAGGTGGACGAGGTCTTCCCTTGGTTTGCACTTGTATTGACCAGCTTCCTCCAAGAACCAGTAGGCCCTTTGTGACATCTGGAGTCATTTTATGTATATGAACTGTTGTAGCTCGTCTCTCGCAACATCAACTTATTATGGTTTCTTCTTGATGATTGTATCTACTATGGTTATCATCTTCACAATATTGTTACTTGATTGCCTTTGGATACTTGCTGTGCAATCTAAAACTTTTTTTATGACTT</gDNA_template>
            <first_frame> L  I  N  Y  S  P  S  R  F  S  H  I  P  P  P  P  S  S  S  S  S  N  R  A  I  L  A  A  I  A  I  N  K  H  Q  I  K  Q  T  K  S  I  Q  K  K  K  K  V  N  S  P  K  N  A  A  T  T  P  I  P  H  P  R  F  R  S  P  P  S  S  *  H  Q  N  Q  I  I  F  S  T  F  S  P  T  H  H  P  F  H  H  *  Y  T  Y  R  R  S  S  A  E  D  R  N  R  R  R  S  K  R  R  V  C  F  R  R  *  V  G  C  E  S  V  P  P  S  W  *  R  C  Y  P  C  S  R  P  S  N  F  R  T  L  R  C  *  L  G  I  C  *  A  I  Y  C  *  Y  G  E  *  G  E  S  E  E  A  *  G  *  F  R  Y  V  Y  Y  Y  *  S  V  *  F  S  S  A  F  G  *  C  S  D  S  V  *  D  P  Y  C  *  G  S  *  Y  E  G  E  V  V  S  *  G  *  E  V  R  A  *  C  C  Y  Y  G  E  S  R  I  W  S  Y  E  E  G  E  *  W  K  T  W  E  C  *  *  L  L  C  *  A  L  C  V  S  C  C  G  C  *  V  S  R  *  *  G  C  W  K  C  C  C  R  A  R  G  F  C  C  F  S  C  *  R  R  R  G  G  S  *  V  P  *  C  F  *  G  S  K  R :   F  I  M  K  V  D  E  V  F  P  W  F  A  L  V  L  T  S  F  L  Q  E  P  V  G  P  L  *  H  L  E  S  F  Y  V  Y  E  L  L  *  L  V  S  R  N  I  N  L  L  W  F  L  L  D  D  C  I  Y  Y  G  Y  H  L  H  N  I  V  T  *  L  P  L  D  T  C  C  A  I  *  N  F  F  Y  D   </first_frame>
            <second_frame>  *  S  I  I  P  L  L  D  S  L  I  F  L  L  L  L  L  L  H  H  Q  I  E  Q  F  S  L  P  *  R  *  T  S  I  K  S  N  K  Q  N  Q  F  K  R  K  K  R  S  T  P  L  R  M  Q  Q  Q  P  P  S  P  T  P  D  S  D  L  P  R  L  A  N  I  K  I  K  S  S  S  P  R  F  P  P  P  T  T  P  S  I  T  D  T  P  T  A  G  A  Q  R  R  I  G  I  A  V  D  L  S  D  E  S  A  F  A  V  K  W  A  V  N  Q  Y  L  R  P  G  D  A  V  I  L  V  H  V  R  P  T  S  V  L  Y  G  A  D  W  G  S  V  E  L  S  I  V  D  T  E  N  E  E  S  Q  R  K  L  E  D  D  F  D  T  F  T  T  T  K  A  S  D  L  A  Q  P  L  V  D  A  Q  I  P  F  K  I  H  I  V  K  D  H  D  M  R  E  R  L  C  L  E  V  E  R  L  G  L  S  A  V  I  M  G  S  R  G  F  G  A  T  K  R  G  S  D  G  R  L  G  S  V  S  D  Y  C  V  R  H  C  V  C  P  V  V  V  V  R  Y  P  D  D  K  D  A  G  N  A  V  V  E  P  V  V  S  V  A  S  A  A  E  E  D  E  E  E  A  E  Y  H  D  A  S  E  D  R  K   : D  S  *  *  R  W  T  R  S  S  L  G  L  H  L  Y  *  P  A  S  S  K  N  Q  *  A  L  C  D  I  W  S  H  F  M  Y  M  N  C  C  S  S  S  L  A  T  S  T  Y  Y  G  F  F  L  M  I  V  S  T  M  V  I  I  F  T  I  L  L  L  D  C  L  W  I  L  A  V  Q  S  K  T  F  F  M  T  </second_frame>
            <third_frame>   N  Q  L  F  P  F  *  I  L  S  Y  S  S  S  S  F  F  F  I  I  K  *  S  N  S  R  C  H  S  D  K  Q  A  S  N  Q  T  N  K  I  N  S  K  E  K  K  G  Q  L  P  *  E  C  S  N  N  P  H  P  P  P  P  I  P  I  S  P  V  *  L  T  S  K  S  N  H  L  L  H  V  F  P  H  P  P  P  L  P  S  L  I  H  L  P  P  E  L  S  G  G  S  E  S  P  S  I  *  A  T  S  L  L  S  P  L  S  G  L  *  I  S  T  S  V  L  V  T  L  L  S  L  F  T  S  V  Q  L  P  Y  S  T  V  L  I  G  D  L  L  S  Y  L  L  L  I  R  R  M  R  R  V  R  G  S  L  R  M  I  S  I  R  L  L  L  L  K  R  L  I  *  L  S  L  W  L  M  L  R  F  R  L  R  S  I  L  L  R  I  M  I  *  G  R  G  C  V  L  R  L  R  G  *  G  L  V  L  L  L  W  G  V  E  D  L  E  L  R  R  G  G  V  M  E  D  L  G  V  L  V  I  I  V  L  G  T  V  C  V  L  L  W  L  L  G  I  P  M  I  R  M  L  E  M  L  L  *  S  P  W  F  L  L  L  Q  L  L  K  K  T  R  R  K  L  S  T  M  M  L  L  R  I  E  K  :  I  H  N  E  G  G  R  G  L  P  L  V  C  T  C  I  D  Q  L  P  P  R  T  S  R  P  F  V  T  S  G  V  I  L  C  I  *  T  V  V  A  R  L  S  Q  H  Q  L  I  M  V  S  S  *  *  L  Y  L  L  W  L  S  S  S  Q  Y  C  Y  L  I  A  F  G  Y  L  L  C  N  L  K  L  F  L  *  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24627" stop="23844"/>
                    <exon start="21523" stop="21516"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>789</number_coding_nucleotides>
                  <number_encoded_amino_acids>263</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSIKSNKQNQFKRKKRSTPLRMQQQPPSPTPDSDLPRLANIKIKSSSPRFPPPTTPSITDTPTAGAQRRIGIAVDLSDESAFAVKWAVNQYLRPGDAVILVHVRPTSVLYGADWGSVELSIVDTENEESQRKLEDDFDTFTTTKASDLAQPLVDAQIPFKIHIVKDHDMRERLCLEVERLGLSAVIMGSRGFGATKRGSDGRLGSVSDYCVRHCVCPVVVVRYPDDKDAGNAVVEPVVSVASAAEEDEEEAEYHDASEDRKDS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="23196" e_stop="22372"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="23196" e_stop="22372" e_length="825"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23196" stop="22372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342044" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTGACATCATACATAGGAATCCTGGGTGTATAAATTACCAGAAATGTGAAAAGGAATTATTTTGGGGTAGGCAGGTACTTAGTTCTGAGAGAATAACACAGGGTAAGCCTGTTTTAGAATAACAGTCATGTGAGTTAAATCCTAAAGCTAATTCTCTTCTAGTTTCCAAATGTCGTGTTGTAGTAAATTCGTGTTTAAGTTCAATTTAAGGTTGGACTTATGGGTTGAAAGGTCCAAAAATACAAAAATGGTTGGAATTATGAGTTATCTTGAATCAACCAATCCCTTACCCAAGACAAGATCTCGAATCAACCAATCGTCATATATTTCATTGGTTTGTTACCTAACCACGACTTTAGGTTTTCTCTAAGGGGATTACCATCTTTCAATGAGTGAACTGGTGGTAAATCTGATCCTAGTAATAAAAGAAGAAGAGAAAGGAAAAAAAGAAGAAGAGTGAAGTTGTGATAGATTAAATGCCAAGTCCAAAGCCGCCTTTTCAAATTTGTCACCTATCAAGCGACATGCATGCCCTAATTTGGCATTTCCAAGTGTGAGCAAAATCCAAGGTCATCTTTTTAATGATTTGGCTCTGCTCTAGTCTTCTAGATGCTGTTCTTTTATCATCCACATGCTTACCATGAAACTATTAACTTACCTTAAGATTAGTTGGGAAAGAAAAAGTGTACATAAAGAGTGTTTTGGTTCTGGGTGATGAAAAGATAGACAACCCTATAGTGTATATGCTTGTTAAGCCAGAAAGATCTCCTTTAAGCATGGAAAGTGGTGTAGACATTTGAGGCTATTATTATCTTATTATCCA</gDNA_template>
            <first_frame> Y  *  H  H  T  *  E  S  W  V  Y  K  L  P  E  M  *  K  G  I  I  L  G  *  A  G  T  *  F  *  E  N  N  T  G  *  A  C  F  R  I  T  V  M  *  V  K  S  *  S  *  F  S  S  S  F  Q  M  S  C  C  S  K  F  V  F  K  F  N  L  R  L  D  L  W  V  E  R  S  K  N  T  K  M  V  G  I  M  S  Y  L  E  S  T  N  P  L  P  K  T  R  S  R  I  N  Q  S  S  Y  I  S  L  V  C  Y  L  T  T  T  L  G  F  L  *  G  D  Y  H  L  S  M  S  E  L  V  V  N  L  I  L  V  I  K  E  E  E  K  G  K  K  E  E  E  *  S  C  D  R  L  N  A  K  S  K  A  A  F  S  N  L  S  P  I  K  R  H  A  C  P  N  L  A  F  P  S  V  S  K  I  Q  G  H  L  F  N  D  L  A  L  L  *  S  S  R  C  C  S  F  I  I  H  M  L  T  M  K  L  L  T  Y  L  K  I  S  W  E  R  K  S  V  H  K  E  C  F  G  S  G  *  *  K  D  R  Q  P  Y  S  V  Y  A  C  *  A  R  K  I  S  F  K  H  G  K  W  C  R  H  L  R  L  L  L  S  Y  Y  P </first_frame>
            <second_frame>  I  D  I  I  H  R  N  P  G  C  I  N  Y  Q  K  C  E  K  E  L  F  W  G  R  Q  V  L  S  S  E  R  I  T  Q  G  K  P  V  L  E  *  Q  S  C  E  L  N  P  K  A  N  S  L  L  V  S  K  C  R  V  V  V  N  S  C  L  S  S  I  *  G  W  T  Y  G  L  K  G  P  K  I  Q  K  W  L  E  L  *  V  I  L  N  Q  P  I  P  Y  P  R  Q  D  L  E  S  T  N  R  H  I  F  H  W  F  V  T  *  P  R  L  *  V  F  S  K  G  I  T  I  F  Q  *  V  N  W  W  *  I  *  S  *  *  *  K  K  K  R  K  E  K  K  K  K  S  E  V  V  I  D  *  M  P  S  P  K  P  P  F  Q  I  C  H  L  S  S  D  M  H  A  L  I  W  H  F  Q  V  *  A  K  S  K  V  I  F  L  M  I  W  L  C  S  S  L  L  D  A  V  L  L  S  S  T  C  L  P  *  N  Y  *  L  T  L  R  L  V  G  K  E  K  V  Y  I  K  S  V  L  V  L  G  D  E  K  I  D  N  P  I  V  Y  M  L  V  K  P  E  R  S  P  L  S  M  E  S  G  V  D  I  *  G  Y  Y  Y  L  I  I   </second_frame>
            <third_frame>   L  T  S  Y  I  G  I  L  G  V  *  I  T  R  N  V  K  R  N  Y  F  G  V  G  R  Y  L  V  L  R  E  *  H  R  V  S  L  F  *  N  N  S  H  V  S  *  I  L  K  L  I  L  F  *  F  P  N  V  V  L  *  *  I  R  V  *  V  Q  F  K  V  G  L  M  G  *  K  V  Q  K  Y  K  N  G  W  N  Y  E  L  S  *  I  N  Q  S  L  T  Q  D  K  I  S  N  Q  P  I  V  I  Y  F  I  G  L  L  P  N  H  D  F  R  F  S  L  R  G  L  P  S  F  N  E  *  T  G  G  K  S  D  P  S  N  K  R  R  R  E  R  K  K  R  R  R  V  K  L  *  *  I  K  C  Q  V  Q  S  R  L  F  K  F  V  T  Y  Q  A  T  C  M  P  *  F  G  I  S  K  C  E  Q  N  P  R  S  S  F  *  *  F  G  S  A  L  V  F  *  M  L  F  F  Y  H  P  H  A  Y  H  E  T  I  N  L  P  *  D  *  L  G  K  K  K  C  T  *  R  V  F  W  F  W  V  M  K  R  *  T  T  L  *  C  I  C  L  L  S  Q  K  D  L  L  *  A  W  K  V  V  *  T  F  E  A  I  I  I  L  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23043" stop="22825"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSSSFQMSCCSKFVFKFNLRLDLWVERSKNTKMVGIMSYLESTNPLPKTRSRINQSSYISLVCYLTTTLGFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="27811" PGL_stop="27218"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27811" e_stop="27218"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="27811" e_stop="27218" e_length="594"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27811" stop="27218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343236" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAACACCTTTCTTACTGCCTCTTCCCCACCCCACCAACTCACAAAATTTCAACTACTGTTCCATTGAAAATGGCTACTTCTCTTCAGTTTTCTTCAGATCATCACCCTATTCCTCAGGAAAATCATCAAACAACGAACCAGACCTCAACGGGAGGACGTAGAAGGTCGAGTAAAAATGGACAGAAGAAGAAGAAGCAACCACAAAGAGGAATGGGAGTTGAACAACTCGAACGTCTTCGAGTACAAGATCAGATGAAAAACAGTACTATCCATGGCGTTCATCATAATCATCAGTACTACTCTAATAACAATTTCCCTAAATTAACTCCTGTTTCATCATTTACCGGCGGTGGTAGTGCTAGTGCTGATCCTGGAAATTATAGTAATTCTATTTTGAACTCTTCACCAGTACTTCAGTTCCCCAAATTGTGTGCAGTGAGCCCTAATGATTTTTTTATGCAACAAAAAGTTGTGAATACTGGGTTTATTGGATCTAGTAGTACAAATCAGTTGATGATTTCTTCTCATGATCATCATCAGTTTCAATCTCAGATGAATCTCTACGGATTTGCAACTTCTAAGCCCAGTACTG</gDNA_template>
            <first_frame> K  N  T  F  L  T  A  S  S  P  P  H  Q  L  T  K  F  Q  L  L  F  H  *  K  W  L  L  L  F  S  F  L  Q  I  I  T  L  F  L  R  K  I  I  K  Q  R  T  R  P  Q  R  E  D  V  E  G  R  V  K  M  D  R  R  R  R  S  N  H  K  E  E  W  E  L  N  N  S  N  V  F  E  Y  K  I  R  *  K  T  V  L  S  M  A  F  I  I  I  I  S  T  T  L  I  T  I  S  L  N  *  L  L  F  H  H  L  P  A  V  V  V  L  V  L  I  L  E  I  I  V  I  L  F  *  T  L  H  Q  Y  F  S  S  P  N  C  V  Q  *  A  L  M  I  F  L  C  N  K  K  L  *  I  L  G  L  L  D  L  V  V  Q  I  S  *  *  F  L  L  M  I  I  I  S  F  N  L  R  *  I  S  T  D  L  Q  L  L  S  P  V  L </first_frame>
            <second_frame>  K  T  P  F  L  L  P  L  P  H  P  T  N  S  Q  N  F  N  Y  C  S  I  E  N  G  Y  F  S  S  V  F  F  R  S  S  P  Y  S  S  G  K  S  S  N  N  E  P  D  L  N  G  R  T  *  K  V  E  *  K  W  T  E  E  E  E  A  T  T  K  R  N  G  S  *  T  T  R  T  S  S  S  T  R  S  D  E  K  Q  Y  Y  P  W  R  S  S  *  S  S  V  L  L  *  *  Q  F  P  *  I  N  S  C  F  I  I  Y  R  R  W  *  C  *  C  *  S  W  K  L  *  *  F  Y  F  E  L  F  T  S  T  S  V  P  Q  I  V  C  S  E  P  *  *  F  F  Y  A  T  K  S  C  E  Y  W  V  Y  W  I  *  *  Y  K  S  V  D  D  F  F  S  *  S  S  S  V  S  I  S  D  E  S  L  R  I  C  N  F  *  A  Q  Y   </second_frame>
            <third_frame>   K  H  L  S  Y  C  L  F  P  T  P  P  T  H  K  I  S  T  T  V  P  L  K  M  A  T  S  L  Q  F  S  S  D  H  H  P  I  P  Q  E  N  H  Q  T  T  N  Q  T  S  T  G  G  R  R  R  S  S  K  N  G  Q  K  K  K  K  Q  P  Q  R  G  M  G  V  E  Q  L  E  R  L  R  V  Q  D  Q  M  K  N  S  T  I  H  G  V  H  H  N  H  Q  Y  Y  S  N  N  N  F  P  K  L  T  P  V  S  S  F  T  G  G  G  S  A  S  A  D  P  G  N  Y  S  N  S  I  L  N  S  S  P  V  L  Q  F  P  K  L  C  A  V  S  P  N  D  F  F  M  Q  Q  K  V  V  N  T  G  F  I  G  S  S  S  T  N  Q  L  M  I  S  S  H  D  H  H  Q  F  Q  S  Q  M  N  L  Y  G  F  A  T  S  K  P  S  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27809" stop="27219"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KHLSYCLFPTPPTHKISTTVPLKMATSLQFSSDHHPIPQENHQTTNQTSTGGRRRSSKNGQKKKKQPQRGMGVEQLERLRVQDQMKNSTIHGVHHNHQYYSNNNFPKLTPVSSFTGGGSASADPGNYSNSILNSSPVLQFPKLCAVSPNDFFMQQKVVNTGFIGSSSTNQLMISSHDHHQFQSQMNLYGFATSKPST</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="35884" PGL_stop="34771"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35884" e_stop="35485"/>
            <exon e_start="35037" e_stop="34771"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.409" acc_prob="1.000" e_score="0.962"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="35884" e_stop="35485" e_length="400"/>
          </exon>
          <intron i_serial="1" don_prob="0.409" acc_prob="1.000">
            <gDNA_intron_boundary i_start="35484" i_stop="35038" i_length="447"/>
          </intron>
          <exon e_serial="2" e_score="0.974">
            <gDNA_exon_boundary e_start="35037" e_stop="34771" e_length="267"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35884" stop="35485"/>
              <exon start="35037" stop="34771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35882" stop="35485"/>
              <exon start="35037" stop="34905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337806" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTATCCTAAATTCGCGATATTTTTAGTCCAAAGACATTTTTGTCTTTCTATCCCCCCTATCTCCTTCCTCCCTGCAAATGCCTATTTAGTTCTGTAAATATTTTACACATTGGGCATGGGCAAATGGCAAAATTAGCGAAAAATCGAGGAAGGAATAGATTTTTTAATAGTTGTTATAAGCCTCTACATTTCAACGATGATATATCTAATACAAATAAACGAGGTCATTTGTATAATTCAACAGATATATCTAATTTGAAGAGAGTAAAATCACAAGAAAAATTGGATTCAATGTTGGGAAAAGATTTGACCAAAAATTTTCGACCAAATCGAAAGGAGAATGCCTTTGGAAGGAATTTTTCTCATGCACTCAAAAATGTGTTTTTTGATACATCATTG : GGGAAGAAAGGCCAGAGGAAAGAGCATAAGTATTCATTTGGATCATGTAAAAAGTTATCAACAAAATTTGAGAAAATATTTCATTCTACAAAAGAAAAAAAGTTTTCTTCATCAAAGGATTTACCAAAAATTACAAGTAGAATGTCCACAAGTGCAAGCATGGATGATTTTTCCTTATTCACTACTTCTACATCCTCTTTATTTTCTTCTTCTTCTTCTTCTCGTTCGTCTTGTTCATCACAGAGAACGCAATTTTCATCTTTTCAC</gDNA_template>
            <first_frame> F  I  L  N  S  R  Y  F  *  S  K  D  I  F  V  F  L  S  P  L  S  P  S  S  L  Q  M  P  I  *  F  C  K  Y  F  T  H  W  A  W  A  N  G  K  I  S  E  K  S  R  K  E  *  I  F  *  *  L  L  *  A  S  T  F  Q  R  *  Y  I  *  Y  K  *  T  R  S  F  V  *  F  N  R  Y  I  *  F  E  E  S  K  I  T  R  K  I  G  F  N  V  G  K  R  F  D  Q  K  F  S  T  K  S  K  G  E  C  L  W  K  E  F  F  S  C  T  Q  K  C  V  F  *  Y  I  I   : G  E  E  R  P  E  E  R  A  *  V  F  I  W  I  M  *  K  V  I  N  K  I  *  E  N  I  S  F  Y  K  R  K  K  V  F  F  I  K  G  F  T  K  N  Y  K  *  N  V  H  K  C  K  H  G  *  F  F  L  I  H  Y  F  Y  I  L  F  I  F  F  F  F  F  F  S  F  V  L  F  I  T  E  N  A  I  F  I  F  S  </first_frame>
            <second_frame>  L  S  *  I  R  D  I  F  S  P  K  T  F  L  S  F  Y  P  P  Y  L  L  P  P  C  K  C  L  F  S  S  V  N  I  L  H  I  G  H  G  Q  M  A  K  L  A  K  N  R  G  R  N  R  F  F  N  S  C  Y  K  P  L  H  F  N  D  D  I  S  N  T  N  K  R  G  H  L  Y  N  S  T  D  I  S  N  L  K  R  V  K  S  Q  E  K  L  D  S  M  L  G  K  D  L  T  K  N  F  R  P  N  R  K  E  N  A  F  G  R  N  F  S  H  A  L  K  N  V  F  F  D  T  S  L  :  G  K  K  G  Q  R  K  E  H  K  Y  S  F  G  S  C  K  K  L  S  T  K  F  E  K  I  F  H  S  T  K  E  K  K  F  S  S  S  K  D  L  P  K  I  T  S  R  M  S  T  S  A  S  M  D  D  F  S  L  F  T  T  S  T  S  S  L  F  S  S  S  S  S  S  R  S  S  C  S  S  Q  R  T  Q  F  S  S  F  H </second_frame>
            <third_frame>   Y  P  K  F  A  I  F  L  V  Q  R  H  F  C  L  S  I  P  P  I  S  F  L  P  A  N  A  Y  L  V  L  *  I  F  Y  T  L  G  M  G  K  W  Q  N  *  R  K  I  E  E  G  I  D  F  L  I  V  V  I  S  L  Y  I  S  T  M  I  Y  L  I  Q  I  N  E  V  I  C  I  I  Q  Q  I  Y  L  I  *  R  E  *  N  H  K  K  N  W  I  Q  C  W  E  K  I  *  P  K  I  F  D  Q  I  E  R  R  M  P  L  E  G  I  F  L  M  H  S  K  M  C  F  L  I  H  H  W :   G  R  K  A  R  G  K  S  I  S  I  H  L  D  H  V  K  S  Y  Q  Q  N  L  R  K  Y  F  I  L  Q  K  K  K  S  F  L  H  Q  R  I  Y  Q  K  L  Q  V  E  C  P  Q  V  Q  A  W  M  I  F  P  Y  S  L  L  L  H  P  L  Y  F  L  L  L  L  L  L  V  R  L  V  H  H  R  E  R  N  F  H  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35874" stop="35485"/>
                    <exon start="35037" stop="34771"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRDIFSPKTFLSFYPPYLLPPCKCLFSSVNILHIGHGQMAKLAKNRGRNRFFNSCYKPLHFNDDISNTNKRGHLYNSTDISNLKRVKSQEKLDSMLGKDLTKNFRPNRKENAFGRNFSHALKNVFFDTSLGKKGQRKEHKYSFGSCKKLSTKFEKIFHSTKEKKFSSSKDLPKITSRMSTSASMDDFSLFTTSTSSLFSSSSSSRSSCSSQRTQFSSFH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="37268" PGL_stop="39000"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37268" e_stop="37501"/>
            <exon e_start="38389" e_stop="38560"/>
            <exon e_start="38751" e_stop="38863"/>
            <exon e_start="38958" e_stop="39000"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.952" e_score="0.994"/>
          <exon-intron don_prob="0.977" acc_prob="0.998" e_score="0.991"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37268" e_stop="37501" e_length="234"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="37502" i_stop="38388" i_length="887"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="38389" e_stop="38560" e_length="172"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.952">
            <gDNA_intron_boundary i_start="38561" i_stop="38750" i_length="190"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="38751" e_stop="38863" e_length="113"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38864" i_stop="38957" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38958" e_stop="39000" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37268" stop="37501"/>
              <exon start="38389" stop="38560"/>
              <exon start="38751" stop="38863"/>
              <exon start="38958" stop="39000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326778" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTAGGGAGAAAGGCGGTTGCTGAATATTTGAGCAAAGAATCCATACGAATATATATACACTATTTTTTCCTCTTCTTCTTGTAGCTCTCGGCGATTGTAATTGAAGAATCCATTTGCGAAGAAAACGAAGAACCCTATGGAGCTTCTCCGATCAAACCTTGCTCGTGTTCGGATTCCAGAGCCGACTACTCGTATCTACAAGCACGAGTGCTGCATTTCTTTCGATACTCCG : AAATCCGATGGCGGGCTGTTTGTTGATATGAGTACTTTTCTTGCATTTGGAAGGGATTGTGTTGATTGGAACTATGAGAAGACTGGGAACCCAGTTTATTTGCATATAAAGCAGACAAAGAAGGCAGATGCTGAAGATAGACCGTCCAAAAAACCCACTCTCTTGGCTATAG : GTTTAGACGGAGGGTTTGATAACAGTGAACCCCAGTACGAAGAATTCTATGAAATAGTTATATTGCCTGATAATGTCACTCTTCCTTTCCCATCGGTGGAATTGCCTGAGAAG : GTTAGATTGGCTGTTGATGCTATTTTACTAGCTGAAGGTGCTG</gDNA_template>
            <first_frame> N  *  G  E  R  R  L  L  N  I  *  A  K  N  P  Y  E  Y  I  Y  T  I  F  S  S  S  S  C  S  S  R  R  L  *  L  K  N  P  F  A  K  K  T  K  N  P  M  E  L  L  R  S  N  L  A  R  V  R  I  P  E  P  T  T  R  I  Y  K  H  E  C  C  I  S  F  D  T  P  :  K  S  D  G  G  L  F  V  D  M  S  T  F  L  A  F  G  R  D  C  V  D  W  N  Y  E  K  T  G  N  P  V  Y  L  H  I  K  Q  T  K  K  A  D  A  E  D  R  P  S  K  K  P  T  L  L  A  I   : G  L  D  G  G  F  D  N  S  E  P  Q  Y  E  E  F  Y  E  I  V  I  L  P  D  N  V  T  L  P  F  P  S  V  E  L  P  E  K  :  V  R  L  A  V  D  A  I  L  L  A  E  G  A  </first_frame>
            <second_frame>  I  R  E  K  G  G  C  *  I  F  E  Q  R  I  H  T  N  I  Y  T  L  F  F  P  L  L  L  V  A  L  G  D  C  N  *  R  I  H  L  R  R  K  R  R  T  L  W  S  F  S  D  Q  T  L  L  V  F  G  F  Q  S  R  L  L  V  S  T  S  T  S  A  A  F  L  S  I  L  R :   N  P  M  A  G  C  L  L  I  *  V  L  F  L  H  L  E  G  I  V  L  I  G  T  M  R  R  L  G  T  Q  F  I  C  I  *  S  R  Q  R  R  Q  M  L  K  I  D  R  P  K  N  P  L  S  W  L  *  :  V  *  T  E  G  L  I  T  V  N  P  S  T  K  N  S  M  K  *  L  Y  C  L  I  M  S  L  F  L  S  H  R  W  N  C  L  R  R :   L  D  W  L  L  M  L  F  Y  *  L  K  V  L </second_frame>
            <third_frame>   L  G  R  K  A  V  A  E  Y  L  S  K  E  S  I  R  I  Y  I  H  Y  F  F  L  F  F  L  *  L  S  A  I  V  I  E  E  S  I  C  E  E  N  E  E  P  Y  G  A  S  P  I  K  P  C  S  C  S  D  S  R  A  D  Y  S  Y  L  Q  A  R  V  L  H  F  F  R  Y  S   : E  I  R  W  R  A  V  C  *  Y  E  Y  F  S  C  I  W  K  G  L  C  *  L  E  L  *  E  D  W  E  P  S  L  F  A  Y  K  A  D  K  E  G  R  C  *  R  *  T  V  Q  K  T  H  S  L  G  Y  R :   F  R  R  R  V  *  *  Q  *  T  P  V  R  R  I  L  *  N  S  Y  I  A  *  *  C  H  S  S  F  P  I  G  G  I  A  *  E   : G  *  I  G  C  *  C  Y  F  T  S  *  R  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37370" stop="37501"/>
                    <exon start="38389" stop="38560"/>
                    <exon start="38751" stop="38863"/>
                    <exon start="38958" stop="38999"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKNPFAKKTKNPMELLRSNLARVRIPEPTTRIYKHECCISFDTPKSDGGLFVDMSTFLAFGRDCVDWNYEKTGNPVYLHIKQTKKADAEDRPSKKPTLLAIGLDGGFDNSEPQYEEFYEIVILPDNVTLPFPSVELPEKVRLAVDAILLAEGA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="40858" PGL_stop="42168"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40858" e_stop="40993"/>
            <exon e_start="41101" e_stop="41157"/>
            <exon e_start="41273" e_stop="41350"/>
            <exon e_start="41994" e_stop="42048"/>
            <exon e_start="42136" e_stop="42168"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.859" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="0.987"/>
          <exon-intron don_prob="0.998" acc_prob="0.864" e_score="0.982"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40858" e_stop="40993" e_length="136"/>
          </exon>
          <intron i_serial="1" don_prob="0.859" acc_prob="0.936">
            <gDNA_intron_boundary i_start="40994" i_stop="41100" i_length="107"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41101" e_stop="41157" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="41158" i_stop="41272" i_length="115"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="41273" e_stop="41350" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41351" i_stop="41993" i_length="643"/>
          </intron>
          <exon e_serial="4" e_score="0.982">
            <gDNA_exon_boundary e_start="41994" e_stop="42048" e_length="55"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.864">
            <gDNA_intron_boundary i_start="42049" i_stop="42135" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="0.970">
            <gDNA_exon_boundary e_start="42136" e_stop="42168" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40858" stop="40993"/>
              <exon start="41101" stop="41157"/>
              <exon start="41273" stop="41350"/>
              <exon start="41994" stop="42048"/>
              <exon start="42136" stop="42168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330693" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACTGAAATGACGACTGCTGAGAGAGAACTAGACCAAAATTTTAACTTTGATTGGAACCGGATTCAAGAGACTGGTGAGGACGTTGAACCACTTTTTGGACCTGGTTACACTGGATTAGTCAATCTTGGTAACAG : TTGCTACTTGGCTGCTACAATGCAGGTTATGTTCTCAACGCGTTCATTTTGTTCAAG : ATACTACTTTGATCAACGTCTGAAAGAAGCTTTTACTACGGCTCCTGCTGATCCGACTGTAGACCTTAACATGCAGCT : AACAAAGCTGGCTCATGGTTTGCTTTCTGGTAAATATTCGGGTCCTGTTCTGGAG : AAGGATAATACTGCTAATGCTGTAAGCTCACAG</gDNA_template>
            <first_frame> R  L  K  *  R  L  L  R  E  N  *  T  K  I  L  T  L  I  G  T  G  F  K  R  L  V  R  T  L  N  H  F  L  D  L  V  T  L  D  *  S  I  L  V  T   : V  A  T  W  L  L  Q  C  R  L  C  S  Q  R  V  H  F  V  Q   : D  T  T  L  I  N  V  *  K  K  L  L  L  R  L  L  L  I  R  L  *  T  L  T  C  S   : *  Q  S  W  L  M  V  C  F  L  V  N  I  R  V  L  F  W  R :   R  I  I  L  L  M  L  *  A  H   </first_frame>
            <second_frame>  D  *  N  D  D  C  *  E  R  T  R  P  K  F  *  L  *  L  E  P  D  S  R  D  W  *  G  R  *  T  T  F  W  T  W  L  H  W  I  S  Q  S  W  *  Q  :  L  L  L  G  C  Y  N  A  G  Y  V  L  N  A  F  I  L  F  K  :  I  L  L  *  S  T  S  E  R  S  F  Y  Y  G  S  C  *  S  D  C  R  P  *  H  A  A  :  N  K  A  G  S  W  F  A  F  W  *  I  F  G  S  C  S  G   : E  G  *  Y  C  *  C  C  K  L  T  </second_frame>
            <third_frame>   T  E  M  T  T  A  E  R  E  L  D  Q  N  F  N  F  D  W  N  R  I  Q  E  T  G  E  D  V  E  P  L  F  G  P  G  Y  T  G  L  V  N  L  G  N  S :   C  Y  L  A  A  T  M  Q  V  M  F  S  T  R  S  F  C  S  R :   Y  Y  F  D  Q  R  L  K  E  A  F  T  T  A  P  A  D  P  T  V  D  L  N  M  Q  L :   T  K  L  A  H  G  L  L  S  G  K  Y  S  G  P  V  L  E  :  K  D  N  T  A  N  A  V  S  S  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40860" stop="40993"/>
                    <exon start="41101" stop="41157"/>
                    <exon start="41273" stop="41350"/>
                    <exon start="41994" stop="42048"/>
                    <exon start="42136" stop="42168"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TEMTTAERELDQNFNFDWNRIQETGEDVEPLFGPGYTGLVNLGNSCYLAATMQVMFSTRSFCSRYYFDQRLKEAFTTAPADPTVDLNMQLTKLAHGLLSGKYSGPVLEKDNTANAVSSQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="42526" PGL_stop="47025"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42526" e_stop="42561"/>
            <exon e_start="42965" e_stop="43163"/>
            <exon e_start="43300" e_stop="43357"/>
            <exon e_start="43426" e_stop="43548"/>
            <exon e_start="43833" e_stop="43921"/>
            <exon e_start="44009" e_stop="44098"/>
            <exon e_start="45198" e_stop="45368"/>
            <exon e_start="45459" e_stop="45577"/>
            <exon e_start="45686" e_stop="45812"/>
            <exon e_start="46864" e_stop="47025"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.820" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.998" e_score="0.983"/>
          <exon-intron don_prob="0.995" acc_prob="0.738" e_score="0.984"/>
          <exon-intron don_prob="0.995" acc_prob="0.946" e_score="0.989"/>
          <exon-intron don_prob="0.962" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.480" acc_prob="0.850" e_score="0.994"/>
          <exon-intron don_prob="0.986" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42526" e_stop="42561" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.820">
            <gDNA_intron_boundary i_start="42562" i_stop="42964" i_length="403"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42965" e_stop="43163" e_length="199"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43164" i_stop="43299" i_length="136"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="43300" e_stop="43357" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43358" i_stop="43425" i_length="68"/>
          </intron>
          <exon e_serial="4" e_score="0.984">
            <gDNA_exon_boundary e_start="43426" e_stop="43548" e_length="123"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.738">
            <gDNA_intron_boundary i_start="43549" i_stop="43832" i_length="284"/>
          </intron>
          <exon e_serial="5" e_score="0.989">
            <gDNA_exon_boundary e_start="43833" e_stop="43921" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.946">
            <gDNA_intron_boundary i_start="43922" i_stop="44008" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="44009" e_stop="44098" e_length="90"/>
          </exon>
          <intron i_serial="6" don_prob="0.962" acc_prob="1.000">
            <gDNA_intron_boundary i_start="44099" i_stop="45197" i_length="1099"/>
          </intron>
          <exon e_serial="7" e_score="0.994">
            <gDNA_exon_boundary e_start="45198" e_stop="45368" e_length="171"/>
          </exon>
          <intron i_serial="7" don_prob="0.480" acc_prob="0.850">
            <gDNA_intron_boundary i_start="45369" i_stop="45458" i_length="90"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="45459" e_stop="45577" e_length="119"/>
          </exon>
          <intron i_serial="8" don_prob="0.986" acc_prob="0.961">
            <gDNA_intron_boundary i_start="45578" i_stop="45685" i_length="108"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="45686" e_stop="45812" e_length="127"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.978">
            <gDNA_intron_boundary i_start="45813" i_stop="46863" i_length="1051"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="46864" e_stop="47025" e_length="162"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42526" stop="42561"/>
              <exon start="42965" stop="43163"/>
              <exon start="43300" stop="43357"/>
              <exon start="43426" stop="43548"/>
              <exon start="43833" stop="43921"/>
              <exon start="44009" stop="44098"/>
              <exon start="45198" stop="45368"/>
              <exon start="45459" stop="45577"/>
              <exon start="45686" stop="45812"/>
              <exon start="46864" stop="47025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325263" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTAGTCACCCTGAATTTTCAACAATGAGACAACAG : GATGCGTTAGAGTTCTTCCTGCATTTTATTGATCAAGTTGAACGGATAAACTCTGGGACACCTAATTTTGATCCATCAAGGAGCTTCAAGTTTGGTATTGAAGAACGCCTCCAATGTTCCTCGGGCAAAGTCACTTACAACAGAAGGAATGATTATATTCTGTCTCTTAATATTCCTTTGGAGAGGGCTATAAATAAAA : AAGAGCTAGCAGAATTTCAAAATTTGAAGGCTGAGAGAGCTGCAGGAGGAAAAGAACT : GTCTGCTGATGAAATTGTTCGCCCTAGAGTATCATTGAAGGATTGCCTAGATTGCTTTTCAGCTCCTGAGGAGGTGCATGATTTCTACAGCACAGCTTTAACAGCTAGGACTACAGCAATCAA : AACTGCAGGTTTGACTTCTTTTCCAGATTATCTGGTTTTGCACATGCGGAAATTTGTTATGGAGGAAGGTTGGGTGCCAAAGAAGCTCG : ATGTCTACATAGATGTCCCTGAAACCATTGACATAAGTAGCATGCGAAGTAATGGTATTCAACCAGGAGAAGAGCTGTTGCCTGACAGTG : CTGCAGGGGATGGTGAGCAGTCAATAAAGCTTCTGGCTGACGATGATATTGTTGCACAACTTGTTTCAATGGGATTTAATCTACTTCATTGTCAGAAGGCTGCTATCAATACTTCCAACAGTGGAGTAGAGGCAGCAATGGATTGGTTACTTAATCATATGAATGATCCAG : ATATTGATGCTCCTATATCAGAAAACGTGCAAAATCCTGATATTGATCAATCTAAAGTTGATACGCTGGTTTCATTTGGTTTCGAAGAGAAACTTGCCCATAAGGCCCTGAAGGCATCG : GGAGGTGATGTTGAAAAAGCTACTGAATGGATATTCAGCAGCCCTAGTGCCAGTACTGCAGCAGACATGGATGTTACTACCAGTAGTGGAGCTGCAGTTGATACCTTGATGCCTGATGGAGGAGGAA : AATACAGGCTCCTGGGATTCGTGAGCCACATAGGCACATCTACCCACTGTGGCCATTATGTCGCTCATATTAACAAAGATGGCCGGTGGGTGATTTTCAACGATGAAAAAGTTGGGGTCTCAAAAAACCCCCCTATGGATATGGGATACCTCTACTTTTTTG</gDNA_template>
            <first_frame> A  S  H  P  E  F  S  T  M  R  Q  Q  :  D  A  L  E  F  F  L  H  F  I  D  Q  V  E  R  I  N  S  G  T  P  N  F  D  P  S  R  S  F  K  F  G  I  E  E  R  L  Q  C  S  S  G  K  V  T  Y  N  R  R  N  D  Y  I  L  S  L  N  I  P  L  E  R  A  I  N  K   : K  E  L  A  E  F  Q  N  L  K  A  E  R  A  A  G  G  K  E  L :   S  A  D  E  I  V  R  P  R  V  S  L  K  D  C  L  D  C  F  S  A  P  E  E  V  H  D  F  Y  S  T  A  L  T  A  R  T  T  A  I  K :   T  A  G  L  T  S  F  P  D  Y  L  V  L  H  M  R  K  F  V  M  E  E  G  W  V  P  K  K  L   : D  V  Y  I  D  V  P  E  T  I  D  I  S  S  M  R  S  N  G  I  Q  P  G  E  E  L  L  P  D  S   : A  A  G  D  G  E  Q  S  I  K  L  L  A  D  D  D  I  V  A  Q  L  V  S  M  G  F  N  L  L  H  C  Q  K  A  A  I  N  T  S  N  S  G  V  E  A  A  M  D  W  L  L  N  H  M  N  D  P   : D  I  D  A  P  I  S  E  N  V  Q  N  P  D  I  D  Q  S  K  V  D  T  L  V  S  F  G  F  E  E  K  L  A  H  K  A  L  K  A  S  :  G  G  D  V  E  K  A  T  E  W  I  F  S  S  P  S  A  S  T  A  A  D  M  D  V  T  T  S  S  G  A  A  V  D  T  L  M  P  D  G  G  G   : K  Y  R  L  L  G  F  V  S  H  I  G  T  S  T  H  C  G  H  Y  V  A  H  I  N  K  D  G  R  W  V  I  F  N  D  E  K  V  G  V  S  K  N  P  P  M  D  M  G  Y  L  Y  F  F  </first_frame>
            <second_frame>  L  V  T  L  N  F  Q  Q  *  D  N  R :   M  R  *  S  S  S  C  I  L  L  I  K  L  N  G  *  T  L  G  H  L  I  L  I  H  Q  G  A  S  S  L  V  L  K  N  A  S  N  V  P  R  A  K  S  L  T  T  E  G  M  I  I  F  C  L  L  I  F  L  W  R  G  L  *  I  K  :  K  S  *  Q  N  F  K  I  *  R  L  R  E  L  Q  E  E  K  N   : C  L  L  M  K  L  F  A  L  E  Y  H  *  R  I  A  *  I  A  F  Q  L  L  R  R  C  M  I  S  T  A  Q  L  *  Q  L  G  L  Q  Q  S   : K  L  Q  V  *  L  L  F  Q  I  I  W  F  C  T  C  G  N  L  L  W  R  K  V  G  C  Q  R  S  S  :  M  S  T  *  M  S  L  K  P  L  T  *  V  A  C  E  V  M  V  F  N  Q  E  K  S  C  C  L  T  V  :  L  Q  G  M  V  S  S  Q  *  S  F  W  L  T  M  I  L  L  H  N  L  F  Q  W  D  L  I  Y  F  I  V  R  R  L  L  S  I  L  P  T  V  E  *  R  Q  Q  W  I  G  Y  L  I  I  *  M  I  Q  :  I  L  M  L  L  Y  Q  K  T  C  K  I  L  I  L  I  N  L  K  L  I  R  W  F  H  L  V  S  K  R  N  L  P  I  R  P  *  R  H  R :   E  V  M  L  K  K  L  L  N  G  Y  S  A  A  L  V  P  V  L  Q  Q  T  W  M  L  L  P  V  V  E  L  Q  L  I  P  *  C  L  M  E  E  E  :  N  T  G  S  W  D  S  *  A  T  *  A  H  L  P  T  V  A  I  M  S  L  I  L  T  K  M  A  G  G  *  F  S  T  M  K  K  L  G  S  Q  K  T  P  L  W  I  W  D  T  S  T  F  L </second_frame>
            <third_frame>   *  S  P  *  I  F  N  N  E  T  T   : G  C  V  R  V  L  P  A  F  Y  *  S  S  *  T  D  K  L  W  D  T  *  F  *  S  I  K  E  L  Q  V  W  Y  *  R  T  P  P  M  F  L  G  Q  S  H  L  Q  Q  K  E  *  L  Y  S  V  S  *  Y  S  F  G  E  G  Y  K  *  K :   R  A  S  R  I  S  K  F  E  G  *  E  S  C  R  R  K  R  T  :  V  C  *  *  N  C  S  P  *  S  I  I  E  G  L  P  R  L  L  F  S  S  *  G  G  A  *  F  L  Q  H  S  F  N  S  *  D  Y  S  N  Q  :  N  C  R  F  D  F  F  S  R  L  S  G  F  A  H  A  E  I  C  Y  G  G  R  L  G  A  K  E  A  R :   C  L  H  R  C  P  *  N  H  *  H  K  *  H  A  K  *  W  Y  S  T  R  R  R  A  V  A  *  Q  C :   C  R  G  W  *  A  V  N  K  A  S  G  *  R  *  Y  C  C  T  T  C  F  N  G  I  *  S  T  S  L  S  E  G  C  Y  Q  Y  F  Q  Q  W  S  R  G  S  N  G  L  V  T  *  S  Y  E  *  S  R :   Y  *  C  S  Y  I  R  K  R  A  K  S  *  Y  *  S  I  *  S  *  Y  A  G  F  I  W  F  R  R  E  T  C  P  *  G  P  E  G  I   : G  R  *  C  *  K  S  Y  *  M  D  I  Q  Q  P  *  C  Q  Y  C  S  R  H  G  C  Y  Y  Q  *  W  S  C  S  *  Y  L  D  A  *  W  R  R  K :   I  Q  A  P  G  I  R  E  P  H  R  H  I  Y  P  L  W  P  L  C  R  S  Y  *  Q  R  W  P  V  G  D  F  Q  R  *  K  S  W  G  L  K  K  P  P  Y  G  Y  G  I  P  L  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42526" stop="42561"/>
                    <exon start="42965" stop="43163"/>
                    <exon start="43300" stop="43357"/>
                    <exon start="43426" stop="43548"/>
                    <exon start="43833" stop="43921"/>
                    <exon start="44009" stop="44098"/>
                    <exon start="45198" stop="45368"/>
                    <exon start="45459" stop="45577"/>
                    <exon start="45686" stop="45812"/>
                    <exon start="46864" stop="47024"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1173</number_coding_nucleotides>
                  <number_encoded_amino_acids>391</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASHPEFSTMRQQDALEFFLHFIDQVERINSGTPNFDPSRSFKFGIEERLQCSSGKVTYNRRNDYILSLNIPLERAINKKELAEFQNLKAERAAGGKELSADEIVRPRVSLKDCLDCFSAPEEVHDFYSTALTARTTAIKTAGLTSFPDYLVLHMRKFVMEEGWVPKKLDVYIDVPETIDISSMRSNGIQPGEELLPDSAAGDGEQSIKLLADDDIVAQLVSMGFNLLHCQKAAINTSNSGVEAAMDWLLNHMNDPDIDAPISENVQNPDIDQSKVDTLVSFGFEEKLAHKALKASGGDVEKATEWIFSSPSASTAADMDVTTSSGAAVDTLMPDGGGKYRLLGFVSHIGTSTHCGHYVAHINKDGRWVIFNDEKVGVSKNPPMDMGYLYFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="50398" PGL_stop="50866"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50398" e_stop="50866"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="50398" e_stop="50866" e_length="469"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50398" stop="50866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344304" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAATTCTACCAAAAAAAAAAATGAATGCAGCAGCAGCAAAGGGATCGGCATGGATCGTAGCAGCAAGTATTGGAGCAGTAGAAGCATTAAAAGATCAAGGATTTGCCAGATGGAATTACGCTTTAAGATCGATTCATCACTATGCCAAATCTAATTTAATTGCTTCTAGTAATACCTCGGCTCGGAGATTCTCGACGGCTTCGGCGCCGGCGGCGTCTTCTCCGGCAGTCGTCTCCGGTGAGAAGCTGAGGAAAACGGAAGAGACGTTGAGTAAAGTTATAGATCTGAACTGTTGGGGTCCAAGCACTGTCAGATTTTAGTTTTATATACTTAAATTTGTTATATGATCTATTAATGAAAAGAGTAATAGAGATCAATTTTGAAAATTTACTCTTGTTTATATTTGAATATTTATGGAACAAAACACATTTTATATACAATTATCACTCAATTATAGTAATGTAATAT</gDNA_template>
            <first_frame> L  I  L  P  K  K  K  M  N  A  A  A  A  K  G  S  A  W  I  V  A  A  S  I  G  A  V  E  A  L  K  D  Q  G  F  A  R  W  N  Y  A  L  R  S  I  H  H  Y  A  K  S  N  L  I  A  S  S  N  T  S  A  R  R  F  S  T  A  S  A  P  A  A  S  S  P  A  V  V  S  G  E  K  L  R  K  T  E  E  T  L  S  K  V  I  D  L  N  C  W  G  P  S  T  V  R  F  *  F  Y  I  L  K  F  V  I  *  S  I  N  E  K  S  N  R  D  Q  F  *  K  F  T  L  V  Y  I  *  I  F  M  E  Q  N  T  F  Y  I  Q  L  S  L  N  Y  S  N  V  I  </first_frame>
            <second_frame>  *  F  Y  Q  K  K  K  *  M  Q  Q  Q  Q  R  D  R  H  G  S  *  Q  Q  V  L  E  Q  *  K  H  *  K  I  K  D  L  P  D  G  I  T  L  *  D  R  F  I  T  M  P  N  L  I  *  L  L  L  V  I  P  R  L  G  D  S  R  R  L  R  R  R  R  R  L  L  R  Q  S  S  P  V  R  S  *  G  K  R  K  R  R  *  V  K  L  *  I  *  T  V  G  V  Q  A  L  S  D  F  S  F  I  Y  L  N  L  L  Y  D  L  L  M  K  R  V  I  E  I  N  F  E  N  L  L  L  F  I  F  E  Y  L  W  N  K  T  H  F  I  Y  N  Y  H  S  I  I  V  M  *  Y </second_frame>
            <third_frame>   N  S  T  K  K  K  N  E  C  S  S  S  K  G  I  G  M  D  R  S  S  K  Y  W  S  S  R  S  I  K  R  S  R  I  C  Q  M  E  L  R  F  K  I  D  S  S  L  C  Q  I  *  F  N  C  F  *  *  Y  L  G  S  E  I  L  D  G  F  G  A  G  G  V  F  S  G  S  R  L  R  *  E  A  E  E  N  G  R  D  V  E  *  S  Y  R  S  E  L  L  G  S  K  H  C  Q  I  L  V  L  Y  T  *  I  C  Y  M  I  Y  *  *  K  E  *  *  R  S  I  L  K  I  Y  S  C  L  Y  L  N  I  Y  G  T  K  H  I  L  Y  T  I  I  T  Q  L  *  *  C  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50398" stop="50718"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LILPKKKMNAAAAKGSAWIVAASIGAVEALKDQGFARWNYALRSIHHYAKSNLIASSNTSARRFSTASAPAASSPAVVSGEKLRKTEETLSKVIDLNCWGPSTVRF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="55625" PGL_stop="58924"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55625" e_stop="55993"/>
            <exon e_start="56137" e_stop="56207"/>
            <exon e_start="56866" e_stop="56947"/>
            <exon e_start="57046" e_stop="57164"/>
            <exon e_start="58292" e_stop="58369"/>
            <exon e_start="58453" e_stop="58572"/>
            <exon e_start="58664" e_stop="58924"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="0.999" e_score="0.995"/>
          <exon-intron don_prob="0.965" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.874" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.727" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="55625" e_stop="55993" e_length="369"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55994" i_stop="56136" i_length="143"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56137" e_stop="56207" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.992">
            <gDNA_intron_boundary i_start="56208" i_stop="56865" i_length="658"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56866" e_stop="56947" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="56948" i_stop="57045" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="57046" e_stop="57164" e_length="119"/>
          </exon>
          <intron i_serial="4" don_prob="0.874" acc_prob="0.998">
            <gDNA_intron_boundary i_start="57165" i_stop="58291" i_length="1127"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="58292" e_stop="58369" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.971">
            <gDNA_intron_boundary i_start="58370" i_stop="58452" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="58453" e_stop="58572" e_length="120"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.727">
            <gDNA_intron_boundary i_start="58573" i_stop="58663" i_length="91"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="58664" e_stop="58924" e_length="261"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55625" stop="55993"/>
              <exon start="56137" stop="56207"/>
              <exon start="56866" stop="56947"/>
              <exon start="57046" stop="57164"/>
              <exon start="58292" stop="58324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58311" stop="58369"/>
              <exon start="58453" stop="58572"/>
              <exon start="58664" stop="58924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330586" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGAAAGAGTTTCCTCACTAAGGGACAATTACAAGCTGCCCTAATTTTTATCACCGGAAAATTGCAACTTGTCGTCGGAAAACTCGACTAGATTCCGGCCAAAACTCCGTCCTATGGCAATCGCCGACCACCACAAGTCACATAACTCAGACGGAAAGCTCTGGAAGCTTTGTCCTCTATGGCAATCAGGAACTACGTCTTCTTCTTCGTCGTCTACACAAAATCTTCACTCTCAGAATCACAGTCACCAAAACGGCGTCGGATCTAACAGCTCTCGTGCTTCTACGTCTGTTAGCTCCGTTGCTAGATCACTGCTTCCGGCTAGACGTAGGCTTCGGCTCGATCCAGCTAACAGTCTCTACTTCCCTT : ATGAACCGGGAAAGCAGGTGAAGAGTGCTGTAAAGATTAAGAACACTAGCAAATCTTATGTTGCATTTAAG : TTTCAAACGACTGCACCAAAGAGCTGCTACATGCGACCTCCCGGAGGCATTCTCGAACCCGGTGAAAGTGTTATTGCCACTG : TCTTCAAGTTTGTGGAGCACCCTGAGAACAACGAAAAGCCTGTGGACCAAAAGAGCAAAGTTAAGTTCAAGATCATAAGCTTGAAGGTGAAAGAAGGTGTAGATTACGTACCTGAGTTG : TTTGAAGAACAAAAGGATCACGTGACTATTGAACGTATCCTACGGGTGGTGTTCTTGGACCCAGAACGACCTTCTCCA : GTGCTGGATAAACTAAAGCGTCAGTTGGCTGAAGCTGAGGCAGCATTAGAATCTCGCAAGAAACCTCCAGTTGAAACTGGACCTAAAGTTGTAGGAGAAGGTCTAGTAATAGATGAATGG : AAGGAACGAAGGGAGAAGTATCTCGCTCGGCAGCAGGTTGAGGCTGTTGATTCAGTGTAAAGCAACTAGTGGATTTTAATTCAAGTTCCTTCTTTTGCTATAATTGAAATGTCAAGCCACATCCATCCATTTTCTGCTTTAATTCTTTCGAAGGATGGTGGAAAACGGACAGTGTGGTCCGTCTTGTAAAGAAAGAATAATCAGTGGGAGGTTTAGTTTCTTCTTCATGGAGTAAAAGCTTGTTATGTAATTGCTTTGGTT</gDNA_template>
            <first_frame> V  K  E  F  P  H  *  G  T  I  T  S  C  P  N  F  Y  H  R  K  I  A  T  C  R  R  K  T  R  L  D  S  G  Q  N  S  V  L  W  Q  S  P  T  T  T  S  H  I  T  Q  T  E  S  S  G  S  F  V  L  Y  G  N  Q  E  L  R  L  L  L  R  R  L  H  K  I  F  T  L  R  I  T  V  T  K  T  A  S  D  L  T  A  L  V  L  L  R  L  L  A  P  L  L  D  H  C  F  R  L  D  V  G  F  G  S  I  Q  L  T  V  S  T  S  L  :  M  N  R  E  S  R  *  R  V  L  *  R  L  R  T  L  A  N  L  M  L  H  L  S :   F  K  R  L  H  Q  R  A  A  T  C  D  L  P  E  A  F  S  N  P  V  K  V  L  L  P  L  :  S  S  S  L  W  S  T  L  R  T  T  K  S  L  W  T  K  R  A  K  L  S  S  R  S  *  A  *  R  *  K  K  V  *  I  T  Y  L  S  C :   L  K  N  K  R  I  T  *  L  L  N  V  S  Y  G  W  C  S  W  T  Q  N  D  L  L  Q :   C  W  I  N  *  S  V  S  W  L  K  L  R  Q  H  *  N  L  A  R  N  L  Q  L  K  L  D  L  K  L  *  E  K  V  *  *  *  M  N  G :   R  N  E  G  R  S  I  S  L  G  S  R  L  R  L  L  I  Q  C  K  A  T  S  G  F  *  F  K  F  L  L  L  L  *  L  K  C  Q  A  T  S  I  H  F  L  L  *  F  F  R  R  M  V  E  N  G  Q  C  G  P  S  C  K  E  R  I  I  S  G  R  F  S  F  F  F  M  E  *  K  L  V  M  *  L  L  W   </first_frame>
            <second_frame>  *  K  S  F  L  T  K  G  Q  L  Q  A  A  L  I  F  I  T  G  K  L  Q  L  V  V  G  K  L  D  *  I  P  A  K  T  P  S  Y  G  N  R  R  P  P  Q  V  T  *  L  R  R  K  A  L  E  A  L  S  S  M  A  I  R  N  Y  V  F  F  F  V  V  Y  T  K  S  S  L  S  E  S  Q  S  P  K  R  R  R  I  *  Q  L  S  C  F  Y  V  C  *  L  R  C  *  I  T  A  S  G  *  T  *  A  S  A  R  S  S  *  Q  S  L  L  P  L :   *  T  G  K  A  G  E  E  C  C  K  D  *  E  H  *  Q  I  L  C  C  I  *   : V  S  N  D  C  T  K  E  L  L  H  A  T  S  R  R  H  S  R  T  R  *  K  C  Y  C  H  C :   L  Q  V  C  G  A  P  *  E  Q  R  K  A  C  G  P  K  E  Q  S  *  V  Q  D  H  K  L  E  G  E  R  R  C  R  L  R  T  *  V   : V  *  R  T  K  G  S  R  D  Y  *  T  Y  P  T  G  G  V  L  G  P  R  T  T  F  S   : S  A  G  *  T  K  A  S  V  G  *  S  *  G  S  I  R  I  S  Q  E  T  S  S  *  N  W  T  *  S  C  R  R  R  S  S  N  R  *  M   : E  G  T  K  G  E  V  S  R  S  A  A  G  *  G  C  *  F  S  V  K  Q  L  V  D  F  N  S  S  S  F  F  C  Y  N  *  N  V  K  P  H  P  S  I  F  C  F  N  S  F  E  G  W  W  K  T  D  S  V  V  R  L  V  K  K  E  *  S  V  G  G  L  V  S  S  S  W  S  K  S  L  L  C  N  C  F  G  </second_frame>
            <third_frame>   E  R  V  S  S  L  R  D  N  Y  K  L  P  *  F  L  S  P  E  N  C  N  L  S  S  E  N  S  T  R  F  R  P  K  L  R  P  M  A  I  A  D  H  H  K  S  H  N  S  D  G  K  L  W  K  L  C  P  L  W  Q  S  G  T  T  S  S  S  S  S  S  T  Q  N  L  H  S  Q  N  H  S  H  Q  N  G  V  G  S  N  S  S  R  A  S  T  S  V  S  S  V  A  R  S  L  L  P  A  R  R  R  L  R  L  D  P  A  N  S  L  Y  F  P   : Y  E  P  G  K  Q  V  K  S  A  V  K  I  K  N  T  S  K  S  Y  V  A  F  K  :  F  Q  T  T  A  P  K  S  C  Y  M  R  P  P  G  G  I  L  E  P  G  E  S  V  I  A  T   : V  F  K  F  V  E  H  P  E  N  N  E  K  P  V  D  Q  K  S  K  V  K  F  K  I  I  S  L  K  V  K  E  G  V  D  Y  V  P  E  L  :  F  E  E  Q  K  D  H  V  T  I  E  R  I  L  R  V  V  F  L  D  P  E  R  P  S  P  :  V  L  D  K  L  K  R  Q  L  A  E  A  E  A  A  L  E  S  R  K  K  P  P  V  E  T  G  P  K  V  V  G  E  G  L  V  I  D  E  W  :  K  E  R  R  E  K  Y  L  A  R  Q  Q  V  E  A  V  D  S  V  *  S  N  *  W  I  L  I  Q  V  P  S  F  A  I  I  E  M  S  S  H  I  H  P  F  S  A  L  I  L  S  K  D  G  G  K  R  T  V  W  S  V  L  *  R  K  N  N  Q  W  E  V  *  F  L  L  H  G  V  K  A  C  Y  V  I  A  L  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55669" stop="55993"/>
                    <exon start="56137" stop="56207"/>
                    <exon start="56866" stop="56947"/>
                    <exon start="57046" stop="57164"/>
                    <exon start="58292" stop="58369"/>
                    <exon start="58453" stop="58572"/>
                    <exon start="58664" stop="58723"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLSPENCNLSSENSTRFRPKLRPMAIADHHKSHNSDGKLWKLCPLWQSGTTSSSSSSTQNLHSQNHSHQNGVGSNSSRASTSVSSVARSLLPARRRLRLDPANSLYFPYEPGKQVKSAVKIKNTSKSYVAFKFQTTAPKSCYMRPPGGILEPGESVIATVFKFVEHPENNEKPVDQKSKVKFKIISLKVKEGVDYVPELFEEQKDHVTIERILRVVFLDPERPSPVLDKLKRQLAEAEAALESRKKPPVETGPKVVGEGLVIDEWKERREKYLARQQVEAVDSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="62127" PGL_stop="59627"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62127" e_stop="61463"/>
            <exon e_start="60295" e_stop="59627"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62127" e_stop="61463" e_length="665"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="61462" i_stop="60296" i_length="1167"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="60295" e_stop="59627" e_length="669"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62127" stop="61463"/>
              <exon start="60295" stop="60129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61623" stop="61463"/>
              <exon start="60295" stop="59627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61617" stop="61463"/>
              <exon start="60295" stop="60101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336573" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTTTTTCTCTCCACCATATCTTCATAATTTTTACTATTCTAAGCTTTCTATTTTCATTTCTCATATATATATTTTTTCCTTCCGTTTGAAAACCCCATAAAAACATAGGTTAATTTCTGATAAAATATATTTTCAGTACAATTTTCTCCATTAAAGCTTTAACGAATCACCAGGTTTGAGACGACTCGTCGGGAAATGGGGCGCCGTCTCTTCACCTGCTTCGGCAAAGGCGGTTCTTCTCATTCTTCTTCAAAAGATCCCGGCTCGAATAACAAGGACAGTGCGACGGCGGATTTGACGGCGGAGGAGCAAAAACGGTGCGGGCCGGTGGTGGTGGAGTTATTCTCATCGCAAGGCTGCGCCACCTCACCTGAAGCGGAGCTGTTGTTTTCGAGGATTGGGAGAGGCGATTTTAACCTAGAAATGCCGGTGATTTTGTTGGCTTATCATGTGGATTATTGGGATTATATGGGTTGGAAGGATCCGTTTGGGTCGAGTTTATGGACGGTTAAACAAAAAGCGTATGTGGAGACCTTAAATCTAGATACCATGTTTACGCCTCAAATTGTGGTTCAGGGAAGAGCTCAATGTGTTGGGAATGAACAAGATGCGGTTTTCTCTTGTATCAAATCTGCCCCCAGATTTGCTGCTCCTTCCTTCCAG : GCAACATTCGAGAGGCCAACACCAGAGTCATTGCAAGTATCTCTATTAGGATCTCTAAGGAGTAAGGTGGACAATGATGGTGCCAACGTGATGATTGCTCTGTACGAAGGTGGTCTGGTGACTGATATCGCTGCAGGAGAGAACAAAGGAAAAATGCTTGCGAATGACTATGTTGTCAGGAGGCTGGAAAAGCTTTGCTATGTAAAGGATATTACTGCAAAGAAGACAATCTCAGGAACTGTCAATTTCTCTCTTTGGGATGGCTTCAATAGCAGCAAATGTGGCGTAGCGCTCTTTGTGGAATCTGGCTCTCATCAAATATGTGGATCACAAAACTTTAAATTGCCAGAAAATCTCTGAATTCTTCGATGATATATCACTGATGTAAACTCTTGATTTGCTGGCTATAGGTTGAATTGCTTATAGTGCACGTTTCTGATTAAAATCAAATCTGCAAAACATTCTATATACCAGCTTGTTCCTTGTGTATATAGGTTGTGTGAGACTGTTCATGTTAGATTCTTCATCCTTTTTTCTTCTTACTGTTCATTCTTTTTCTTTTTTATAAACGGTTGGCATAGTGATTCTTTCCTTCTACTATGTATAATTGGGGATTATTAGAAAATGCGGCTACAGATATATTAGTGTAAATGCTTTTCCCAATTATGT</gDNA_template>
            <first_frame> T  F  F  S  P  P  Y  L  H  N  F  Y  Y  S  K  L  S  I  F  I  S  H  I  Y  I  F  S  F  R  L  K  T  P  *  K  H  R  L  I  S  D  K  I  Y  F  Q  Y  N  F  L  H  *  S  F  N  E  S  P  G  L  R  R  L  V  G  K  W  G  A  V  S  S  P  A  S  A  K  A  V  L  L  I  L  L  Q  K  I  P  A  R  I  T  R  T  V  R  R  R  I  *  R  R  R  S  K  N  G  A  G  R  W  W  W  S  Y  S  H  R  K  A  A  P  P  H  L  K  R  S  C  C  F  R  G  L  G  E  A  I  L  T  *  K  C  R  *  F  C  W  L  I  M  W  I  I  G  I  I  W  V  G  R  I  R  L  G  R  V  Y  G  R  L  N  K  K  R  M  W  R  P  *  I  *  I  P  C  L  R  L  K  L  W  F  R  E  E  L  N  V  L  G  M  N  K  M  R  F  S  L  V  S  N  L  P  P  D  L  L  L  L  P  S  R :   Q  H  S  R  G  Q  H  Q  S  H  C  K  Y  L  Y  *  D  L  *  G  V  R  W  T  M  M  V  P  T  *  *  L  L  C  T  K  V  V  W  *  L  I  S  L  Q  E  R  T  K  E  K  C  L  R  M  T  M  L  S  G  G  W  K  S  F  A  M  *  R  I  L  L  Q  R  R  Q  S  Q  E  L  S  I  S  L  F  G  M  A  S  I  A  A  N  V  A  *  R  S  L  W  N  L  A  L  I  K  Y  V  D  H  K  T  L  N  C  Q  K  I  S  E  F  F  D  D  I  S  L  M  *  T  L  D  L  L  A  I  G  *  I  A  Y  S  A  R  F  *  L  K  S  N  L  Q  N  I  L  Y  T  S  L  F  L  V  Y  I  G  C  V  R  L  F  M  L  D  S  S  S  F  F  L  L  T  V  H  S  F  S  F  L  *  T  V  G  I  V  I  L  S  F  Y  Y  V  *  L  G  I  I  R  K  C  G  Y  R  Y  I  S  V  N  A  F  P  N  Y   </first_frame>
            <second_frame>  P  F  S  L  H  H  I  F  I  I  F  T  I  L  S  F  L  F  S  F  L  I  Y  I  F  F  P  S  V  *  K  P  H  K  N  I  G  *  F  L  I  K  Y  I  F  S  T  I  F  S  I  K  A  L  T  N  H  Q  V  *  D  D  S  S  G  N  G  A  P  S  L  H  L  L  R  Q  R  R  F  F  S  F  F  F  K  R  S  R  L  E  *  Q  G  Q  C  D  G  G  F  D  G  G  G  A  K  T  V  R  A  G  G  G  G  V  I  L  I  A  R  L  R  H  L  T  *  S  G  A  V  V  F  E  D  W  E  R  R  F  *  P  R  N  A  G  D  F  V  G  L  S  C  G  L  L  G  L  Y  G  L  E  G  S  V  W  V  E  F  M  D  G  *  T  K  S  V  C  G  D  L  K  S  R  Y  H  V  Y  A  S  N  C  G  S  G  K  S  S  M  C  W  E  *  T  R  C  G  F  L  L  Y  Q  I  C  P  Q  I  C  C  S  F  L  P   : G  N  I  R  E  A  N  T  R  V  I  A  S  I  S  I  R  I  S  K  E  *  G  G  Q  *  W  C  Q  R  D  D  C  S  V  R  R  W  S  G  D  *  Y  R  C  R  R  E  Q  R  K  N  A  C  E  *  L  C  C  Q  E  A  G  K  A  L  L  C  K  G  Y  Y  C  K  E  D  N  L  R  N  C  Q  F  L  S  L  G  W  L  Q  *  Q  Q  M  W  R  S  A  L  C  G  I  W  L  S  S  N  M  W  I  T  K  L  *  I  A  R  K  S  L  N  S  S  M  I  Y  H  *  C  K  L  L  I  C  W  L  *  V  E  L  L  I  V  H  V  S  D  *  N  Q  I  C  K  T  F  Y  I  P  A  C  S  L  C  I  *  V  V  *  D  C  S  C  *  I  L  H  P  F  F  F  L  L  F  I  L  F  L  F  Y  K  R  L  A  *  *  F  F  P  S  T  M  Y  N  W  G  L  L  E  N  A  A  T  D  I  L  V  *  M  L  F  P  I  M  </second_frame>
            <third_frame>   L  F  L  S  T  I  S  S  *  F  L  L  F  *  A  F  Y  F  H  F  S  Y  I  Y  F  F  L  P  F  E  N  P  I  K  T  *  V  N  F  *  *  N  I  F  S  V  Q  F  S  P  L  K  L  *  R  I  T  R  F  E  T  T  R  R  E  M  G  R  R  L  F  T  C  F  G  K  G  G  S  S  H  S  S  S  K  D  P  G  S  N  N  K  D  S  A  T  A  D  L  T  A  E  E  Q  K  R  C  G  P  V  V  V  E  L  F  S  S  Q  G  C  A  T  S  P  E  A  E  L  L  F  S  R  I  G  R  G  D  F  N  L  E  M  P  V  I  L  L  A  Y  H  V  D  Y  W  D  Y  M  G  W  K  D  P  F  G  S  S  L  W  T  V  K  Q  K  A  Y  V  E  T  L  N  L  D  T  M  F  T  P  Q  I  V  V  Q  G  R  A  Q  C  V  G  N  E  Q  D  A  V  F  S  C  I  K  S  A  P  R  F  A  A  P  S  F  Q  :  A  T  F  E  R  P  T  P  E  S  L  Q  V  S  L  L  G  S  L  R  S  K  V  D  N  D  G  A  N  V  M  I  A  L  Y  E  G  G  L  V  T  D  I  A  A  G  E  N  K  G  K  M  L  A  N  D  Y  V  V  R  R  L  E  K  L  C  Y  V  K  D  I  T  A  K  K  T  I  S  G  T  V  N  F  S  L  W  D  G  F  N  S  S  K  C  G  V  A  L  F  V  E  S  G  S  H  Q  I  C  G  S  Q  N  F  K  L  P  E  N  L  *  I  L  R  *  Y  I  T  D  V  N  S  *  F  A  G  Y  R  L  N  C  L  *  C  T  F  L  I  K  I  K  S  A  K  H  S  I  Y  Q  L  V  P  C  V  Y  R  L  C  E  T  V  H  V  R  F  F  I  L  F  S  S  Y  C  S  F  F  F  F  F  I  N  G  W  H  S  D  S  F  L  L  L  C  I  I  G  D  Y  *  K  M  R  L  Q  I  Y  *  C  K  C  F  S  Q  L  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61963" stop="61463"/>
                    <exon start="60295" stop="59936"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>858</number_coding_nucleotides>
                  <number_encoded_amino_acids>286</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RITRFETTRREMGRRLFTCFGKGGSSHSSSKDPGSNNKDSATADLTAEEQKRCGPVVVELFSSQGCATSPEAELLFSRIGRGDFNLEMPVILLAYHVDYWDYMGWKDPFGSSLWTVKQKAYVETLNLDTMFTPQIVVQGRAQCVGNEQDAVFSCIKSAPRFAAPSFQATFERPTPESLQVSLLGSLRSKVDNDGANVMIALYEGGLVTDIAAGENKGKMLANDYVVRRLEKLCYVKDITAKKTISGTVNFSLWDGFNSSKCGVALFVESGSHQICGSQNFKLPENL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59869" stop="59675"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CTFLIKIKSAKHSIYQLVPCVYRLCETVHVRFFILFSSYCSFFFFFINGWHSDSFLLLCIIGDY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="66584" PGL_stop="68225"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66584" e_stop="66901"/>
            <exon e_start="67021" e_stop="67182"/>
            <exon e_start="67649" e_stop="68225"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66584" e_stop="66901" e_length="318"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.988">
            <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67021" e_stop="67182" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67649" e_stop="68225" e_length="577"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66584" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="67843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66742" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="68225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67057" stop="67182"/>
              <exon start="67649" stop="68008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67858" stop="68225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339004" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67964" stop="68225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339012" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTCAACACTTCTCATTGGTTGATACAAAAATTTCAAAACTATTTCACACCACAATTTTATAAAACACAAGAACCAGAATTGTTAAATGGGGCCCCTCCAGATATTTTTCCAACAGTTATTCTTTATATATAAGTATATAAATTGTGCAAGAAACTTAGTGAGGTCCAATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG : AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG : GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTG</gDNA_template>
            <first_frame> T  Q  H  F  S  L  V  D  T  K  I  S  K  L  F  H  T  T  I  L  *  N  T  R  T  R  I  V  K  W  G  P  S  R  Y  F  S  N  S  Y  S  L  Y  I  S  I  *  I  V  Q  E  T  *  *  G  P  I  N  *  K  R  N  *  A  I  E  K  M  A  A  T  G  S  S  A  T  V  V  R  A  T  P  F  L  G  Q  T  K  Y  A  N  P  L  R  D  I  V  P  M  G  S  A  R  F  T  M  :  S  N  D  L  W  Y  G  P  D  R  V  K  Y  L  G  P  F  S  A  Q  T  P  S  Y  L  T  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  A  F  A  K  N  R  A  L  E  :  V  I  H  G  R  W  A  M  L  G  A  F  G  C  I  T  P  E  V  L  E  K  W  V  K  V  D  F  K  E  P  V  W  F  K  A  G  A  Q  I  F  S  E  G  G  L  D  Y  L  G  N  P  N  L  V  H  A  Q  S  I  L  A  V  L  G  F  Q  V  V  L  M  G  L  V  E  G  F  R  I  N  G  L  P  G  V  G  E  G  N  N  L  Y  P  G  G  Q  Y  F  D  P  L  G  L  A  D  D  P  T  T  F  A  E  L  K  V  K  E  I  K  N  G  R  L  A  M  F  S  M  F  G  F  F  V  Q  A  I  V  T  G  K  G  P  L  E  N  L  L  D  H  L  D  N  P  V  A  N  N  A  W  V  Y  A  T  K  F  V  P  G  S  *  I  F  F  T  Y  R  L  C  S  F  V  P  L  N  H  S  F  I  M  Q  I  F  </first_frame>
            <second_frame>  L  N  T  S  H  W  L  I  Q  K  F  Q  N  Y  F  T  P  Q  F  Y  K  T  Q  E  P  E  L  L  N  G  A  P  P  D  I  F  P  T  V  I  L  Y  I  *  V  Y  K  L  C  K  K  L  S  E  V  Q  L  I  K  R  E  I  K  Q  *  R  K  W  Q  Q  Q  V  A  Q  P  Q  L  L  E  Q  L  H  F  W  A  R  P  N  M  L  T  P  *  G  I  *  F  L  W  A  L  P  D  S  P  * :   V  M  I  C  G  M  D  L  T  V  S  S  T  W  D  H  F  L  L  K  L  L  H  T  *  L  E  N  S  L  V  I  T  D  G  I  L  L  V  Y  L  L  I  P  R  P  L  L  R  T  E  L  L  R :   L  S  M  G  D  G  P  C  L  E  L  L  V  A  L  H  Q  K  F  L  K  N  G  *  K  W  T  S  K  N  Q  Y  G  S  K  L  E  P  R  S  S  V  K  V  G  W  T  I  W  A  T  Q  T  L  S  M  L  R  A  F  *  Q  Y  W  A  S  K  L  Y  *  W  A  L  *  K  V  S  E  L  M  G  F  L  E  L  V  K  A  T  I  S  T  Q  V  D  S  T  L  T  H  W  A  *  Q  M  T  Q  Q  L  S  R  N  S  R  S  R  K  S  R  T  E  D  *  L  C  S  P  C  L  D  S  S  F  K  L  L  S  P  A  K  A  H  L  K  I  Y  W  I  T  L  T  T  L  L  L  T  M  H  G  F  T  Q  L  S  L  F  L  D  L  K  F  F  S  H  I  D  F  V  A  L  Y  H  S  I  I  H  S  *  C  K  Y  L </second_frame>
            <third_frame>   S  T  L  L  I  G  *  Y  K  N  F  K  T  I  S  H  H  N  F  I  K  H  K  N  Q  N  C  *  M  G  P  L  Q  I  F  F  Q  Q  L  F  F  I  Y  K  Y  I  N  C  A  R  N  L  V  R  S  N  *  L  K  E  K  L  S  N  R  E  N  G  S  N  R  *  L  S  H  S  C  *  S  N  S  I  F  G  P  D  Q  I  C  *  P  P  K  G  Y  S  S  Y  G  L  C  Q  I  H  H   : E  *  *  F  V  V  W  T  *  P  C  Q  V  L  G  T  I  F  C  S  N  S  F  I  L  D  W  R  I  P  W  *  L  R  M  G  Y  C  W  F  I  C  *  S  R  G  L  C  *  E  Q  S  S  *   : G  Y  P  W  E  M  G  H  A  W  S  F  W  L  H  Y  T  R  S  S  *  K  M  G  K  S  G  L  Q  R  T  S  M  V  Q  S  W  S  P  D  L  Q  *  R  W  A  G  L  F  G  Q  P  K  P  C  P  C  S  E  H  S  S  S  I  G  L  P  S  C  T  N  G  P  C  R  R  F  Q  N  *  W  A  S  W  S  W  *  R  Q  Q  S  L  P  R  W  T  V  L  *  P  I  G  P  S  R  *  P  N  N  F  R  G  T  Q  G  Q  G  N  Q  E  R  K  I  S  Y  V  L  H  V  W  I  L  R  S  S  Y  C  H  R  Q  R  P  T  *  K  S  I  G  S  P  *  Q  P  C  C  *  Q  C  M  G  L  R  N  *  V  C  S  W  I  L  N  F  F  H  I  S  T  L  *  L  C  T  T  Q  S  F  I  H  N  A  N  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66773" stop="66901"/>
                    <exon start="67021" stop="67182"/>
                    <exon start="67649" stop="68158"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>798</number_coding_nucleotides>
                  <number_encoded_amino_acids>266</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIEKMAATGSSATVVRATPFLGQTKYANPLRDIVPMGSARFTMSNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="70608" PGL_stop="69164"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70608" e_stop="70532"/>
            <exon e_start="70419" e_stop="70319"/>
            <exon e_start="69615" e_stop="69412"/>
            <exon e_start="69245" e_stop="69164"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.995"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70608" e_stop="70532" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.989">
            <gDNA_intron_boundary i_start="70531" i_stop="70420" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70419" e_stop="70319" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.954" acc_prob="0.951">
            <gDNA_intron_boundary i_start="70318" i_stop="69616" i_length="703"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="69615" e_stop="69412" e_length="204"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="69411" i_stop="69246" i_length="166"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="69245" e_stop="69164" e_length="82"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70608" stop="70532"/>
              <exon start="70419" stop="70319"/>
              <exon start="69615" stop="69412"/>
              <exon start="69245" stop="69164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341848" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAGTGATGTCTAAAGCGAAGGTTGCTCGTGAAGGAAGTGATGAGCAACTGGTGGCTGTCGTGCAGATACAATCAG : CTATTCGTGGTTGGTTGGCTAGAAGGGGTCTTCGCAAACTGCGAAATTCAAAAATGTTAAATGTAGACAAACGAAGATCAGGCAGAAAGACGGAGGTCAAG : GAGTTGCCTCGAGAAATCCTACCATCTGTTGTAGAAGACCTCGAAAGACGGGTTGCAAAGGCCGAGGCAACAACTGAACAAAAGGAAAAGGAAAATGCTGCCCTGAAGGAACAAGTAAACCAATTCGAGACCAGATGCTTAGAATATGAGGTCAAGATGAGGTCAATGGAGGAGATGTGGCAAAAGCAAATGACATCATTGCAG : GTTAGTCTAGCTGCAGCCAGGAACAGTCTTACCGCTGCTGACACTACTGGTCGACCTGGAAAGCTTGAAGGTTCCCCATCTC</gDNA_template>
            <first_frame> *  S  D  V  *  S  E  G  C  S  *  R  K  *  *  A  T  G  G  C  R  A  D  T  I  S :   Y  S  W  L  V  G  *  K  G  S  S  Q  T  A  K  F  K  N  V  K  C  R  Q  T  K  I  R  Q  K  D  G  G  Q   : G  V  A  S  R  N  P  T  I  C  C  R  R  P  R  K  T  G  C  K  G  R  G  N  N  *  T  K  G  K  G  K  C  C  P  E  G  T  S  K  P  I  R  D  Q  M  L  R  I  *  G  Q  D  E  V  N  G  G  D  V  A  K  A  N  D  I  I  A   : G  *  S  S  C  S  Q  E  Q  S  Y  R  C  *  H  Y  W  S  T  W  K  A  *  R  F  P  I   </first_frame>
            <second_frame>  K  V  M  S  K  A  K  V  A  R  E  G  S  D  E  Q  L  V  A  V  V  Q  I  Q  S   : A  I  R  G  W  L  A  R  R  G  L  R  K  L  R  N  S  K  M  L  N  V  D  K  R  R  S  G  R  K  T  E  V  K  :  E  L  P  R  E  I  L  P  S  V  V  E  D  L  E  R  R  V  A  K  A  E  A  T  T  E  Q  K  E  K  E  N  A  A  L  K  E  Q  V  N  Q  F  E  T  R  C  L  E  Y  E  V  K  M  R  S  M  E  E  M  W  Q  K  Q  M  T  S  L  Q  :  V  S  L  A  A  A  R  N  S  L  T  A  A  D  T  T  G  R  P  G  K  L  E  G  S  P  S  </second_frame>
            <third_frame>   K  *  C  L  K  R  R  L  L  V  K  E  V  M  S  N  W  W  L  S  C  R  Y  N  Q  :  L  F  V  V  G  W  L  E  G  V  F  A  N  C  E  I  Q  K  C  *  M  *  T  N  E  D  Q  A  E  R  R  R  S  R :   S  C  L  E  K  S  Y  H  L  L  *  K  T  S  K  D  G  L  Q  R  P  R  Q  Q  L  N  K  R  K  R  K  M  L  P  *  R  N  K  *  T  N  S  R  P  D  A  *  N  M  R  S  R  *  G  Q  W  R  R  C  G  K  S  K  *  H  H  C  R :   L  V  *  L  Q  P  G  T  V  L  P  L  L  T  L  L  V  D  L  E  S  L  K  V  P  H  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70607" stop="70532"/>
                    <exon start="70419" stop="70319"/>
                    <exon start="69615" stop="69412"/>
                    <exon start="69245" stop="69165"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVMSKAKVAREGSDEQLVAVVQIQSAIRGWLARRGLRKLRNSKMLNVDKRRSGRKTEVKELPREILPSVVEDLERRVAKAEATTEQKEKENAALKEQVNQFETRCLEYEVKMRSMEEMWQKQMTSLQVSLAAARNSLTAADTTGRPGKLEGSPS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="71925" PGL_stop="70852"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71925" e_stop="71884"/>
            <exon e_start="71801" e_stop="71666"/>
            <exon e_start="71201" e_stop="70852"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71925" e_stop="71884" e_length="42"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.997">
            <gDNA_intron_boundary i_start="71883" i_stop="71802" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71801" e_stop="71666" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.942" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71665" i_stop="71202" i_length="464"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71201" e_stop="70852" e_length="350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71925" stop="71884"/>
              <exon start="71801" stop="71666"/>
              <exon start="71201" stop="70852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342639" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGCTATCCTACTAGGTTAACACATCAAGAATTCACAAGCAG : GTACGGCTTCCTTCTGCCAAAGGATAGTGCATGCCAAGATCCTTTAAGTATGTCAGTTGCCATTCTTCATCAATTTGGTATTCTTCCGGAACTGTACCAAGTTGGGTATACCAAGTTATATTTCCGATCAGGACAG : ATTGCTTCATTGGAGGATGCAAGGAACCAAGTTCTGCAAGGTACTCTTGAGTTGCAGAAGTGCTTCCGTGGTCATCGTGCTCGTCGGCACTTCCATGAACTGAAAGGAGGAGTAATCATACTTCAATCATGTAAAGCAGATCCCTTTGCAACTCGTCTCTTTTCTTCCCTTTTTTCGTTGAATATAATAGAAGATGATATTCATGAAGATTGTTGTGTCTATCAGGTTGGATGAGTATTTTTCCATTTCAAGACTATATTAGATGTCTTCAAAGTTTTGAGCACTTGGGGATGCCATTCAAGTGGTTTTAGAAAAAGAAAAAACATACAACTTTTGTCTCAAAAAAAAAA</gDNA_template>
            <first_frame> W  L  S  Y  *  V  N  T  S  R  I  H  K  Q  :  V  R  L  P  S  A  K  G  *  C  M  P  R  S  F  K  Y  V  S  C  H  S  S  S  I  W  Y  S  S  G  T  V  P  S  W  V  Y  Q  V  I  F  P  I  R  T   : D  C  F  I  G  G  C  K  E  P  S  S  A  R  Y  S  *  V  A  E  V  L  P  W  S  S  C  S  S  A  L  P  *  T  E  R  R  S  N  H  T  S  I  M  *  S  R  S  L  C  N  S  S  L  F  F  P  F  F  V  E  Y  N  R  R  *  Y  S  *  R  L  L  C  L  S  G  W  M  S  I  F  P  F  Q  D  Y  I  R  C  L  Q  S  F  E  H  L  G  M  P  F  K  W  F  *  K  K  K  K  H  T  T  F  V  S  K  K  K </first_frame>
            <second_frame>  G  Y  P  T  R  L  T  H  Q  E  F  T  S  R :   Y  G  F  L  L  P  K  D  S  A  C  Q  D  P  L  S  M  S  V  A  I  L  H  Q  F  G  I  L  P  E  L  Y  Q  V  G  Y  T  K  L  Y  F  R  S  G  Q  :  I  A  S  L  E  D  A  R  N  Q  V  L  Q  G  T  L  E  L  Q  K  C  F  R  G  H  R  A  R  R  H  F  H  E  L  K  G  G  V  I  I  L  Q  S  C  K  A  D  P  F  A  T  R  L  F  S  S  L  F  S  L  N  I  I  E  D  D  I  H  E  D  C  C  V  Y  Q  V  G  *  V  F  F  H  F  K  T  I  L  D  V  F  K  V  L  S  T  W  G  C  H  S  S  G  F  R  K  R  K  N  I  Q  L  L  S  Q  K  K   </second_frame>
            <third_frame>   A  I  L  L  G  *  H  I  K  N  S  Q  A   : G  T  A  S  F  C  Q  R  I  V  H  A  K  I  L  *  V  C  Q  L  P  F  F  I  N  L  V  F  F  R  N  C  T  K  L  G  I  P  S  Y  I  S  D  Q  D  R :   L  L  H  W  R  M  Q  G  T  K  F  C  K  V  L  L  S  C  R  S  A  S  V  V  I  V  L  V  G  T  S  M  N  *  K  E  E  *  S  Y  F  N  H  V  K  Q  I  P  L  Q  L  V  S  F  L  P  F  F  R  *  I  *  *  K  M  I  F  M  K  I  V  V  S  I  R  L  D  E  Y  F  S  I  S  R  L  Y  *  M  S  S  K  F  *  A  L  G  D  A  I  Q  V  V  L  E  K  E  K  T  Y  N  F  C  L  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71924" stop="71884"/>
                    <exon start="71801" stop="71666"/>
                    <exon start="71201" stop="70968"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GYPTRLTHQEFTSRYGFLLPKDSACQDPLSMSVAILHQFGILPELYQVGYTKLYFRSGQIASLEDARNQVLQGTLELQKCFRGHRARRHFHELKGGVIILQSCKADPFATRLFSSLFSLNIIEDDIHEDCCVYQVG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="89543" PGL_stop="94007"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89543" e_stop="89743"/>
            <exon e_start="90161" e_stop="90316"/>
            <exon e_start="91410" e_stop="91465"/>
            <exon e_start="92317" e_stop="92447"/>
            <exon e_start="92541" e_stop="92626"/>
            <exon e_start="92719" e_stop="92750"/>
            <exon e_start="93429" e_stop="93530"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="0.975"/>
          <exon-intron don_prob="0.974" acc_prob="0.879" e_score="0.968"/>
          <exon-intron don_prob="0.997" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.872" acc_prob="0.628" e_score="0.977"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="89543" e_stop="89743" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.997">
            <gDNA_intron_boundary i_start="89744" i_stop="90160" i_length="417"/>
          </intron>
          <exon e_serial="2" e_score="0.968">
            <gDNA_exon_boundary e_start="90161" e_stop="90316" e_length="156"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.879">
            <gDNA_intron_boundary i_start="90317" i_stop="91409" i_length="1093"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91410" e_stop="91465" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.984">
            <gDNA_intron_boundary i_start="91466" i_stop="92316" i_length="851"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="92317" e_stop="92447" e_length="131"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.951">
            <gDNA_intron_boundary i_start="92448" i_stop="92540" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="0.977">
            <gDNA_exon_boundary e_start="92541" e_stop="92626" e_length="86"/>
          </exon>
          <intron i_serial="5" don_prob="0.872" acc_prob="0.628">
            <gDNA_intron_boundary i_start="92627" i_stop="92718" i_length="92"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="92719" e_stop="92750" e_length="32"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="92751" i_stop="93428" i_length="678"/>
          </intron>
          <exon e_serial="7" e_score="0.951">
            <gDNA_exon_boundary e_start="93429" e_stop="93530" e_length="102"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89543" stop="89743"/>
              <exon start="90161" stop="90316"/>
              <exon start="91410" stop="91465"/>
              <exon start="92317" stop="92447"/>
              <exon start="92541" stop="92626"/>
              <exon start="92719" stop="92750"/>
              <exon start="93429" stop="93530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339655" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAAAAAATATCAACGTTCAATCGGCAAACCAAGCTCACTGTTTCTTCTTCTTCTCTCTTTCATGGCGCTCCAGCACTCGCCTATTGGCACAATTACTTCTTCAGCTCAAATGAAGCTGGCTGTTAGCAGTTTGAGGTGCTACGAGCACCTTCGTCCTATCACTATCTCAAGCTTCAAGCGTTTTCCACGAAGAATTCAGG : GTGCGCATAGTAGTGTGGAGCAAAGGAAGTTGCTTAGCAGAGGTATTTCGACAAGCAAAGAAAAATCGAAGGATCTCCATGAAGATGTTTTTTCTTTGCCAATGGCTTGCACTAGTGCCCCAATTAGATTCACAATGCTCTCAACTGCTGTCATAG : CCACAAATTTGGTTGCAACACATACCGCAAATGCTTTGACTATGGATAACATGATG : GATTTCTCTAGCGCTGTCTATACATTAGCTGATGGAAGCATTGGAGATCTTTTTGGTGGCCTTCTGTATTCTGCTGGTCAACAAGCTAATGAAGCTGTTCAGGGCCAGTTGACTGCTCTTAGTTTTACTAG : TTTGGCCACTATTTTTGGTGCCGGGCTTGTAACTAGTCTGTCGCCTTGTACACTCAGCGTACTGCCTCTGACCCTTGGTTATATTG : GGGCTTTTGGTTCTGGGAAAAGCCGAGTAGCG : GTTGTTGGAGATTCAATTGCATTTGCACTGGGATTGGCAACCACACTAGCATTATTGGGTATTGCGGCTGCATTTGCTGGAAAGGCATATGGACAAATAGGA</gDNA_template>
            <first_frame> I  K  N  I  N  V  Q  S  A  N  Q  A  H  C  F  F  F  F  S  L  S  W  R  S  S  T  R  L  L  A  Q  L  L  L  Q  L  K  *  S  W  L  L  A  V  *  G  A  T  S  T  F  V  L  S  L  S  Q  A  S  S  V  F  H  E  E  F  R  :  V  R  I  V  V  W  S  K  G  S  C  L  A  E  V  F  R  Q  A  K  K  N  R  R  I  S  M  K  M  F  F  L  C  Q  W  L  A  L  V  P  Q  L  D  S  Q  C  S  Q  L  L  S  *  :  P  Q  I  W  L  Q  H  I  P  Q  M  L  *  L  W  I  T  *  W :   I  S  L  A  L  S  I  H  *  L  M  E  A  L  E  I  F  L  V  A  F  C  I  L  L  V  N  K  L  M  K  L  F  R  A  S  *  L  L  L  V  L  L   : V  W  P  L  F  L  V  P  G  L  *  L  V  C  R  L  V  H  S  A  Y  C  L  *  P  L  V  I  L  :  G  L  L  V  L  G  K  A  E  *  R :   L  L  E  I  Q  L  H  L  H  W  D  W  Q  P  H  *  H  Y  W  V  L  R  L  H  L  L  E  R  H  M  D  K  *   </first_frame>
            <second_frame>  *  K  I  S  T  F  N  R  Q  T  K  L  T  V  S  S  S  S  L  F  H  G  A  P  A  L  A  Y  W  H  N  Y  F  F  S  S  N  E  A  G  C  *  Q  F  E  V  L  R  A  P  S  S  Y  H  Y  L  K  L  Q  A  F  S  T  K  N  S  G :   C  A  *  *  C  G  A  K  E  V  A  *  Q  R  Y  F  D  K  Q  R  K  I  E  G  S  P  *  R  C  F  F  F  A  N  G  L  H  *  C  P  N  *  I  H  N  A  L  N  C  C  H  S :   H  K  F  G  C  N  T  Y  R  K  C  F  D  Y  G  *  H  D   : G  F  L  *  R  C  L  Y  I  S  *  W  K  H  W  R  S  F  W  W  P  S  V  F  C  W  S  T  S  *  *  S  C  S  G  P  V  D  C  S  *  F  Y  *  :  F  G  H  Y  F  W  C  R  A  C  N  *  S  V  A  L  Y  T  Q  R  T  A  S  D  P  W  L  Y  W :   G  F  W  F  W  E  K  P  S  S   : G  C  W  R  F  N  C  I  C  T  G  I  G  N  H  T  S  I  I  G  Y  C  G  C  I  C  W  K  G  I  W  T  N  R  </second_frame>
            <third_frame>   K  K  Y  Q  R  S  I  G  K  P  S  S  L  F  L  L  L  L  S  F  M  A  L  Q  H  S  P  I  G  T  I  T  S  S  A  Q  M  K  L  A  V  S  S  L  R  C  Y  E  H  L  R  P  I  T  I  S  S  F  K  R  F  P  R  R  I  Q   : G  A  H  S  S  V  E  Q  R  K  L  L  S  R  G  I  S  T  S  K  E  K  S  K  D  L  H  E  D  V  F  S  L  P  M  A  C  T  S  A  P  I  R  F  T  M  L  S  T  A  V  I   : A  T  N  L  V  A  T  H  T  A  N  A  L  T  M  D  N  M  M  :  D  F  S  S  A  V  Y  T  L  A  D  G  S  I  G  D  L  F  G  G  L  L  Y  S  A  G  Q  Q  A  N  E  A  V  Q  G  Q  L  T  A  L  S  F  T  S :   L  A  T  I  F  G  A  G  L  V  T  S  L  S  P  C  T  L  S  V  L  P  L  T  L  G  Y  I   : G  A  F  G  S  G  K  S  R  V  A  :  V  V  G  D  S  I  A  F  A  L  G  L  A  T  T  L  A  L  L  G  I  A  A  A  F  A  G  K  A  Y  G  Q  I  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89545" stop="89743"/>
                    <exon start="90161" stop="90316"/>
                    <exon start="91410" stop="91465"/>
                    <exon start="92317" stop="92447"/>
                    <exon start="92541" stop="92626"/>
                    <exon start="92719" stop="92750"/>
                    <exon start="93429" stop="93530"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>762</number_coding_nucleotides>
                  <number_encoded_amino_acids>254</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKYQRSIGKPSSLFLLLLSFMALQHSPIGTITSSAQMKLAVSSLRCYEHLRPITISSFKRFPRRIQGAHSSVEQRKLLSRGISTSKEKSKDLHEDVFSLPMACTSAPIRFTMLSTAVIATNLVATHTANALTMDNMMDFSSAVYTLADGSIGDLFGGLLYSAGQQANEAVQGQLTALSFTSLATIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRVAVVGDSIAFALGLATTLALLGIAAAFAGKAYGQIG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="92711" e_stop="92750"/>
            <exon e_start="93429" e_stop="94007"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.975"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="92711" e_stop="92750" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="92751" i_stop="93428" i_length="678"/>
          </intron>
          <exon e_serial="2" e_score="0.952">
            <gDNA_exon_boundary e_start="93429" e_stop="94007" e_length="579"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92711" stop="92750"/>
              <exon start="93429" stop="94007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339654" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACCTTAGGGGCTTTTGGTTCTGGGAAAAGCCGAGTAGCG : GTTGTTGGAGATTCAATTGCATTTGCACTGGGATTGGCAACCACACTAGCATTATTGGGTATTGCGGCTGCATTTGCTGGAAAGGCATATGGACAAATAGGACAAGGATTGCCCGTGGCTGCTTCCTTTTTAGCTATTGTTATGGGGCTAAACCTGTTAGAGGTAACTACATATGTTGAATGCTTCGATAGTGTAGTAATACCCTTTTACTTCTAAGTTTTTGTTTTGAGACTTTGTTGAGTACTATTGTATTTGTTCTTTATTGAGCCCATGCTAACATTTGTTTTTTGTCTGATATTCAGATATTTTGTTCTAAAGGAATTACATCGCTTGTCGTTTTGATATGTTAATCACTCTTGCTTGCATAAATACCAAAAGAGTGATGTTCTATGCAGTACCGGATGCCCCACATCATCTTTACCATAATGAGAACCTGTGAAACAAAAGAAGAGAGATCCGTCTAGGCATTTCGATAGAATGATGACTGCTACTTTTGGTACCTGGATAGTGAAAATTGTGGATAAAACCATCGGATCTAAGTAAAAATTGTATGTCTGGATTTAGCAAAAGCTATGCTTT</gDNA_template>
            <first_frame> D  L  R  G  F  W  F  W  E  K  P  S  S   : G  C  W  R  F  N  C  I  C  T  G  I  G  N  H  T  S  I  I  G  Y  C  G  C  I  C  W  K  G  I  W  T  N  R  T  R  I  A  R  G  C  F  L  F  S  Y  C  Y  G  A  K  P  V  R  G  N  Y  I  C  *  M  L  R  *  C  S  N  T  L  L  L  L  S  F  C  F  E  T  L  L  S  T  I  V  F  V  L  Y  *  A  H  A  N  I  C  F  L  S  D  I  Q  I  F  C  S  K  G  I  T  S  L  V  V  L  I  C  *  S  L  L  L  A  *  I  P  K  E  *  C  S  M  Q  Y  R  M  P  H  I  I  F  T  I  M  R  T  C  E  T  K  E  E  R  S  V  *  A  F  R  *  N  D  D  C  Y  F  W  Y  L  D  S  E  N  C  G  *  N  H  R  I  *  V  K  I  V  C  L  D  L  A  K  A  M  L  </first_frame>
            <second_frame>  T  L  G  A  F  G  S  G  K  S  R  V  A  :  V  V  G  D  S  I  A  F  A  L  G  L  A  T  T  L  A  L  L  G  I  A  A  A  F  A  G  K  A  Y  G  Q  I  G  Q  G  L  P  V  A  A  S  F  L  A  I  V  M  G  L  N  L  L  E  V  T  T  Y  V  E  C  F  D  S  V  V  I  P  F  Y  F  *  V  F  V  L  R  L  C  *  V  L  L  Y  L  F  F  I  E  P  M  L  T  F  V  F  C  L  I  F  R  Y  F  V  L  K  E  L  H  R  L  S  F  *  Y  V  N  H  S  C  L  H  K  Y  Q  K  S  D  V  L  C  S  T  G  C  P  T  S  S  L  P  *  *  E  P  V  K  Q  K  K  R  D  P  S  R  H  F  D  R  M  M  T  A  T  F  G  T  W  I  V  K  I  V  D  K  T  I  G  S  K  *  K  L  Y  V  W  I  *  Q  K  L  C  F </second_frame>
            <third_frame>   P  *  G  L  L  V  L  G  K  A  E  *  R :   L  L  E  I  Q  L  H  L  H  W  D  W  Q  P  H  *  H  Y  W  V  L  R  L  H  L  L  E  R  H  M  D  K  *  D  K  D  C  P  W  L  L  P  F  *  L  L  L  W  G  *  T  C  *  R  *  L  H  M  L  N  A  S  I  V  *  *  Y  P  F  T  S  K  F  L  F  *  D  F  V  E  Y  Y  C  I  C  S  L  L  S  P  C  *  H  L  F  F  V  *  Y  S  D  I  L  F  *  R  N  Y  I  A  C  R  F  D  M  L  I  T  L  A  C  I  N  T  K  R  V  M  F  Y  A  V  P  D  A  P  H  H  L  Y  H  N  E  N  L  *  N  K  R  R  E  I  R  L  G  I  S  I  E  *  *  L  L  L  L  V  P  G  *  *  K  L  W  I  K  P  S  D  L  S  K  N  C  M  S  G  F  S  K  S  Y  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92712" stop="92750"/>
                    <exon start="93429" stop="93644"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLGAFGSGKSRVAVVGDSIAFALGLATTLALLGIAAAFAGKAYGQIGQGLPVAASFLAIVMGLNLLEVTTYVECFDSVVIPFYF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92711" stop="92750"/>
                    <exon start="93429" stop="93607"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLRGFWFWEKPSSGCWRFNCICTGIGNHTSIIGYCGCICWKGIWTNRTRIARGCFLFSYCYGAKPVRGNYIC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="97603" PGL_stop="96922"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97603" e_stop="96922"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="97603" e_stop="96922" e_length="682"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97603" stop="96922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329726" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAGCATTGAGAGTATCAAAACCTAAACGGCAAGACACGCTGGAGAGTACATGGAAGACGATAACGGAGGGCCGTGCAATGCCACTAACGAGGCACCTGAGGAAATCGGACACGTGGGAGACATACGGTGGTCGGAACCCGGTTACACCACCACCGCAGAAGATGAAGAAATCTGAGACGTTCAATGACAGAACTACCCCTGACTCCTCGCCATTGCTGACTCCGTCCCCGGGTGGTTCAGGGAAACTTAAGAAAGAGCCATCGCTAAGTCAAGACGAGCTGAACAGGCGAGTTGAAGCGTTTATTAAGAAGTTTAATGAAGATATGAGGTTGCAGAGGCAGCAGTCGATGCAACAGTACACTCAGATGATCAATCGAGGCTCACATTAGGAGTTTTTTTCATATAAACAGAGAAGCTCTCTCTTTTTTCATGTTTTATGGCTTATAGTGAATGCATATTGTTATTTATTCATATTTCTTTTATCGAGAAATTCTCCCAAAAAAAACTAAAAAACTACAGGAAGCTGTAATCCAGTTAGAACATAGACTATATTATCGGAAAGTTTGAGTTGTAATGTTTTATTTTTCTTTCATGTGGATATTATATGGCCTTAACATGTGATCGAACAGTGTTGTGTTCTCCATACAGAAATTGAAATATTTTTATTGATTTTTGAACAAT</gDNA_template>
            <first_frame> G  A  L  R  V  S  K  P  K  R  Q  D  T  L  E  S  T  W  K  T  I  T  E  G  R  A  M  P  L  T  R  H  L  R  K  S  D  T  W  E  T  Y  G  G  R  N  P  V  T  P  P  P  Q  K  M  K  K  S  E  T  F  N  D  R  T  T  P  D  S  S  P  L  L  T  P  S  P  G  G  S  G  K  L  K  K  E  P  S  L  S  Q  D  E  L  N  R  R  V  E  A  F  I  K  K  F  N  E  D  M  R  L  Q  R  Q  Q  S  M  Q  Q  Y  T  Q  M  I  N  R  G  S  H  *  E  F  F  S  Y  K  Q  R  S  S  L  F  F  H  V  L  W  L  I  V  N  A  Y  C  Y  L  F  I  F  L  L  S  R  N  S  P  K  K  N  *  K  T  T  G  S  C  N  P  V  R  T  *  T  I  L  S  E  S  L  S  C  N  V  L  F  F  F  H  V  D  I  I  W  P  *  H  V  I  E  Q  C  C  V  L  H  T  E  I  E  I  F  L  L  I  F  E  Q  </first_frame>
            <second_frame>  E  H  *  E  Y  Q  N  L  N  G  K  T  R  W  R  V  H  G  R  R  *  R  R  A  V  Q  C  H  *  R  G  T  *  G  N  R  T  R  G  R  H  T  V  V  G  T  R  L  H  H  H  R  R  R  *  R  N  L  R  R  S  M  T  E  L  P  L  T  P  R  H  C  *  L  R  P  R  V  V  Q  G  N  L  R  K  S  H  R  *  V  K  T  S  *  T  G  E  L  K  R  L  L  R  S  L  M  K  I  *  G  C  R  G  S  S  R  C  N  S  T  L  R  *  S  I  E  A  H  I  R  S  F  F  H  I  N  R  E  A  L  S  F  F  M  F  Y  G  L  *  *  M  H  I  V  I  Y  S  Y  F  F  Y  R  E  I  L  P  K  K  T  K  K  L  Q  E  A  V  I  Q  L  E  H  R  L  Y  Y  R  K  V  *  V  V  M  F  Y  F  S  F  M  W  I  L  Y  G  L  N  M  *  S  N  S  V  V  F  S  I  Q  K  L  K  Y  F  Y  *  F  L  N  N </second_frame>
            <third_frame>   S  I  E  S  I  K  T  *  T  A  R  H  A  G  E  Y  M  E  D  D  N  G  G  P  C  N  A  T  N  E  A  P  E  E  I  G  H  V  G  D  I  R  W  S  E  P  G  Y  T  T  T  A  E  D  E  E  I  *  D  V  Q  *  Q  N  Y  P  *  L  L  A  I  A  D  S  V  P  G  W  F  R  E  T  *  E  R  A  I  A  K  S  R  R  A  E  Q  A  S  *  S  V  Y  *  E  V  *  *  R  Y  E  V  A  E  A  A  V  D  A  T  V  H  S  D  D  Q  S  R  L  T  L  G  V  F  F  I  *  T  E  K  L  S  L  F  S  C  F  M  A  Y  S  E  C  I  L  L  F  I  H  I  S  F  I  E  K  F  S  Q  K  K  L  K  N  Y  R  K  L  *  S  S  *  N  I  D  Y  I  I  G  K  F  E  L  *  C  F  I  F  L  S  C  G  Y  Y  M  A  L  T  C  D  R  T  V  L  C  S  P  Y  R  N  *  N  I  F  I  D  F  *  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97603" stop="97214"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GALRVSKPKRQDTLESTWKTITEGRAMPLTRHLRKSDTWETYGGRNPVTPPPQKMKKSETFNDRTTPDSSPLLTPSPGGSGKLKKEPSLSQDELNRRVEAFIKKFNEDMRLQRQQSMQQYTQMINRGSH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="109194" PGL_stop="102325"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104496" e_stop="104294"/>
            <exon e_start="103856" e_stop="103669"/>
            <exon e_start="103589" e_stop="103353"/>
            <exon e_start="103232" e_stop="103174"/>
            <exon e_start="102693" e_stop="102325"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.663" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.787" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104496" e_stop="104294" e_length="203"/>
          </exon>
          <intron i_serial="1" don_prob="0.663" acc_prob="0.996">
            <gDNA_intron_boundary i_start="104293" i_stop="103857" i_length="437"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103856" e_stop="103669" e_length="188"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.787">
            <gDNA_intron_boundary i_start="103668" i_stop="103590" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="103589" e_stop="103353" e_length="237"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="1.000">
            <gDNA_intron_boundary i_start="103352" i_stop="103233" i_length="120"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="103232" e_stop="103174" e_length="59"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="103173" i_stop="102694" i_length="480"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102693" e_stop="102325" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104496" stop="104294"/>
              <exon start="103856" stop="103669"/>
              <exon start="103589" stop="103353"/>
              <exon start="103232" stop="103174"/>
              <exon start="102693" stop="102569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103473" stop="103353"/>
              <exon start="103232" stop="103174"/>
              <exon start="102693" stop="102325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335579" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGGTCAGGTTGCTAACCAGACAAGTCAGAAAGCAGAGCCAGTTGCAGTCACTGAACCAGCTAAGCAGGTTCCGGAAGCTGCCAGTCCTCCTAAAGTTGATTATGCTACTGATCTATTTGACATGCTTTCTATGGATTGTCCAACTGACAATGGCTCAGAAGCAGCTTCTACCGATGATAACTCCTGGGCAGGCTTCCAGT : CTGCTCAAGAAGCAACAAAAGCAGAAAATACTGGGGTTACAAACTCCGTTGATCAGAAGAAGTCTCAATCTGCTGCTGCTTCTGGAATTGAAGATTTATTCAAGGATTTACCATCAATTGTGCCTTCTGCCTCATCGCAGAAGCCACAGAAAGATGCTAAAAACGATATAATGAGCCTTTTCGACAAG : TCCAATATTGTGTCACCTTTTGCTATGCATCAACAACAACTTGCTATGCTGGCGCAACAACAGTCTTTACTGATGGCTGCGGCTGCTGCAGGTGGTGCTGTAAGACTTCCTGTAAATGCACAACAAAGCACTAATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAG : GTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAG : CTTCTACTCAATGGGACAGAACACTTCCAGCAACGGTATTGTGCCGCCAGGACCAAGCAAGCAAGCAGCTACCCCGATATCATCAAGCTCCACACAGTCAACAAAAGAATTCGACTTTTCATCCTTGACACAGGGTATGTTCACAAAACGCTGAAAAACCAACAAGGAAGCATACTAGCTATTAGTATACAAATTGTTTTTTTTTCCCACAGGAAATTAGCTTTTGTTGTTCTACTCCTGTTTTGGAGATTGTAAACTAAATGTAGAGGACCAAATATTGAGTTTTCTTTAAGGTGATGGCTTGATTTGTATTTTTGTATCTGGAAAAATAAGCTCTCAAAGATTGGATGGTATTCGATTCTTTTCCTA</gDNA_template>
            <first_frame> F  R  S  G  C  *  P  D  K  S  E  S  R  A  S  C  S  H  *  T  S  *  A  G  S  G  S  C  Q  S  S  *  S  *  L  C  Y  *  S  I  *  H  A  F  Y  G  L  S  N  *  Q  W  L  R  S  S  F  Y  R  *  *  L  L  G  R  L  P  V :   C  S  R  S  N  K  S  R  K  Y  W  G  Y  K  L  R  *  S  E  E  V  S  I  C  C  C  F  W  N  *  R  F  I  Q  G  F  T  I  N  C  A  F  C  L  I  A  E  A  T  E  R  C  *  K  R  Y  N  E  P  F  R  Q   : V  Q  Y  C  V  T  F  C  Y  A  S  T  T  T  C  Y  A  G  A  T  T  V  F  T  D  G  C  G  C  C  R  W  C  C  K  T  S  C  K  C  T  T  K  H  *  W  H  Q  Y  G  K  S  E  L  A  K  F  R  L  S  V  P  W  S  D  N  A  S  S  W  *  D  *  A  G  E  I  Y  A   : G  R  Q  Y  G  T  S  T  C  S  W  K  L  C  A  N  S  S  I  Q  :  L  L  L  N  G  T  E  H  F  Q  Q  R  Y  C  A  A  R  T  K  Q  A  S  S  Y  P  D  I  I  K  L  H  T  V  N  K  R  I  R  L  F  I  L  D  T  G  Y  V  H  K  T  L  K  N  Q  Q  G  S  I  L  A  I  S  I  Q  I  V  F  F  S  H  R  K  L  A  F  V  V  L  L  L  F  W  R  L  *  T  K  C  R  G  P  N  I  E  F  S  L  R  *  W  L  D  L  Y  F  C  I  W  K  N  K  L  S  K  I  G  W  Y  S  I  L  F  L </first_frame>
            <second_frame>  S  G  Q  V  A  N  Q  T  S  Q  K  A  E  P  V  A  V  T  E  P  A  K  Q  V  P  E  A  A  S  P  P  K  V  D  Y  A  T  D  L  F  D  M  L  S  M  D  C  P  T  D  N  G  S  E  A  A  S  T  D  D  N  S  W  A  G  F  Q   : S  A  Q  E  A  T  K  A  E  N  T  G  V  T  N  S  V  D  Q  K  K  S  Q  S  A  A  A  S  G  I  E  D  L  F  K  D  L  P  S  I  V  P  S  A  S  S  Q  K  P  Q  K  D  A  K  N  D  I  M  S  L  F  D  K  :  S  N  I  V  S  P  F  A  M  H  Q  Q  Q  L  A  M  L  A  Q  Q  Q  S  L  L  M  A  A  A  A  A  G  G  A  V  R  L  P  V  N  A  Q  Q  S  T  N  G  T  N  M  V  N  Q  N  W  P  N  L  G  Y  Q  F  P  G  V  I  M  P  A  A  G  K  T  E  L  E  K  Y  M  Q  :  V  G  N  M  G  P  A  H  V  V  G  N  S  V  P  I  P  A  S  S :   F  Y  S  M  G  Q  N  T  S  S  N  G  I  V  P  P  G  P  S  K  Q  A  A  T  P  I  S  S  S  S  T  Q  S  T  K  E  F  D  F  S  S  L  T  Q  G  M  F  T  K  R  *  K  T  N  K  E  A  Y  *  L  L  V  Y  K  L  F  F  F  P  T  G  N  *  L  L  L  F  Y  S  C  F  G  D  C  K  L  N  V  E  D  Q  I  L  S  F  L  *  G  D  G  L  I  C  I  F  V  S  G  K  I  S  S  Q  R  L  D  G  I  R  F  F  S   </second_frame>
            <third_frame>   Q  V  R  L  L  T  R  Q  V  R  K  Q  S  Q  L  Q  S  L  N  Q  L  S  R  F  R  K  L  P  V  L  L  K  L  I  M  L  L  I  Y  L  T  C  F  L  W  I  V  Q  L  T  M  A  Q  K  Q  L  L  P  M  I  T  P  G  Q  A  S  S  :  L  L  K  K  Q  Q  K  Q  K  I  L  G  L  Q  T  P  L  I  R  R  S  L  N  L  L  L  L  L  E  L  K  I  Y  S  R  I  Y  H  Q  L  C  L  L  P  H  R  R  S  H  R  K  M  L  K  T  I  *  *  A  F  S  T  S :   P  I  L  C  H  L  L  L  C  I  N  N  N  L  L  C  W  R  N  N  S  L  Y  *  W  L  R  L  L  Q  V  V  L  *  D  F  L  *  M  H  N  K  A  L  M  A  P  I  W  *  I  R  T  G  Q  I  *  A  I  S  S  L  E  *  *  C  Q  Q  L  V  R  L  S  W  R  N  I  C  R :   *  A  I  W  D  Q  H  M  *  L  E  T  L  C  Q  F  Q  H  P   : A  S  T  Q  W  D  R  T  L  P  A  T  V  L  C  R  Q  D  Q  A  S  K  Q  L  P  R  Y  H  Q  A  P  H  S  Q  Q  K  N  S  T  F  H  P  *  H  R  V  C  S  Q  N  A  E  K  P  T  R  K  H  T  S  Y  *  Y  T  N  C  F  F  F  P  Q  E  I  S  F  C  C  S  T  P  V  L  E  I  V  N  *  M  *  R  T  K  Y  *  V  F  F  K  V  M  A  *  F  V  F  L  Y  L  E  K  *  A  L  K  D  W  M  V  F  D  S  F  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104495" stop="104294"/>
                    <exon start="103856" stop="103669"/>
                    <exon start="103589" stop="103353"/>
                    <exon start="103232" stop="103174"/>
                    <exon start="102693" stop="102540"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>837</number_coding_nucleotides>
                  <number_encoded_amino_acids>279</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGQVANQTSQKAEPVAVTEPAKQVPEAASPPKVDYATDLFDMLSMDCPTDNGSEAASTDDNSWAGFQSAQEATKAENTGVTNSVDQKKSQSAAASGIEDLFKDLPSIVPSASSQKPQKDAKNDIMSLFDKSNIVSPFAMHQQQLAMLAQQQSLLMAAAAAGGAVRLPVNAQQSTNGTNMVNQNWPNLGYQFPGVIMPAAGKTELEKYMQVGNMGPAHVVGNSVPIPASSFYSMGQNTSSNGIVPPGPSKQAATPISSSSTQSTKEFDFSSLTQGMFTKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="109194" e_stop="109009"/>
            <exon e_start="107276" e_stop="107218"/>
            <exon e_start="107079" e_stop="106989"/>
            <exon e_start="105938" e_stop="105884"/>
            <exon e_start="105789" e_stop="105699"/>
            <exon e_start="105594" e_stop="105360"/>
            <exon e_start="104501" e_stop="104294"/>
            <exon e_start="103829" e_stop="103669"/>
            <exon e_start="103589" e_stop="103353"/>
            <exon e_start="103232" e_stop="103174"/>
            <exon e_start="102693" e_stop="102325"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.217" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.663" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.787" e_score="0.963"/>
          <exon-intron don_prob="0.976" acc_prob="1.000" e_score="0.987"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109194" e_stop="109009" e_length="186"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.988">
            <gDNA_intron_boundary i_start="109008" i_stop="107277" i_length="1732"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107276" e_stop="107218" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="0.217" acc_prob="1.000">
            <gDNA_intron_boundary i_start="107217" i_stop="107080" i_length="138"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107079" e_stop="106989" e_length="91"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="1.000">
            <gDNA_intron_boundary i_start="106988" i_stop="105939" i_length="1050"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105938" e_stop="105884" e_length="55"/>
          </exon>
          <intron i_serial="4" don_prob="0.917" acc_prob="0.996">
            <gDNA_intron_boundary i_start="105883" i_stop="105790" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="105789" e_stop="105699" e_length="91"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.970">
            <gDNA_intron_boundary i_start="105698" i_stop="105595" i_length="104"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="105594" e_stop="105360" e_length="235"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.993">
            <gDNA_intron_boundary i_start="105359" i_stop="104502" i_length="858"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="104501" e_stop="104294" e_length="208"/>
          </exon>
          <intron i_serial="7" don_prob="0.663" acc_prob="0.000">
            <gDNA_intron_boundary i_start="104293" i_stop="103830" i_length="464"/>
          </intron>
          <exon e_serial="8" e_score="0.963">
            <gDNA_exon_boundary e_start="103829" e_stop="103669" e_length="161"/>
          </exon>
          <intron i_serial="8" don_prob="0.992" acc_prob="0.787">
            <gDNA_intron_boundary i_start="103668" i_stop="103590" i_length="79"/>
          </intron>
          <exon e_serial="9" e_score="0.987">
            <gDNA_exon_boundary e_start="103589" e_stop="103353" e_length="237"/>
          </exon>
          <intron i_serial="9" don_prob="0.976" acc_prob="1.000">
            <gDNA_intron_boundary i_start="103352" i_stop="103233" i_length="120"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="103232" e_stop="103174" e_length="59"/>
          </exon>
          <intron i_serial="10" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="103173" i_stop="102694" i_length="480"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="102693" e_stop="102325" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109194" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105360"/>
              <exon start="104501" stop="104294"/>
              <exon start="103829" stop="103669"/>
              <exon start="103589" stop="103353"/>
              <exon start="103232" stop="103174"/>
              <exon start="102693" stop="102344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103473" stop="103353"/>
              <exon start="103232" stop="103174"/>
              <exon start="102693" stop="102325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335579" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTCATCCAGTTGCATTTTTCTTTTGATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAG : ATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAA : GGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAG : GTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATT : CAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCGAGCAAA : ATATGAAGAGAAGAGGTGGGTCCCTAAGGATGGGATTCAAAAATCACCTTCCAGGGTTCAAGAAGAGAGGGCTTCGGTGCAATGGCAACAAAACAATGATAGAAGTGGGCGTATACATGCAGCTAGCTCAGGATGTGCATCTGACGAGAGGAAAAATATTCAAGCCTCGAAAGTGAAGCAAGATGTACCTGCTGCTAGAGTCAGTATACCAGTGCCTCCTAGAGGACCAGAGCAT : GTAACTTCAGGTCAGGTTGCTAACCAGACAAGTCAGAAAGCAGAGCCAGTTGCAGTCACTGAACCAGCTAAGCAGGTTCCGGAAGCTGCCAGTCCTCCTAAAGTTGATTATGCTACTGATCTATTTGACATGCTTTCTATGGATTGTCCAACTGACAATGGCTCAGAAGCAGCTTCTACCGATGATAACTCCTGGGCAGGCTTCCAGT : ATACTGGGGTTACAAACTCCGTTGATCAGAAGAAGTCTCAATCTGCTGCTGCTTCTGGAATTGAAGATTTATTCAAGGATTTACCATCAATTGTGCCTTCTGCCTCATCGCAGAAGCCACAGAAAGATGCTAAAAACGATATAATGAGCCTTTTCGACAAG : TCCAATATTGTGTCACCTTTTGCTATGCATCAACAACAACTTGCTATGCTGGCGCAACAACAGTCTTTACTGATGGCTGCGGCTGCTGCAGGTGGTGCTGTAAGACTTCCTGTAAATGCACAACAAAGCACTAATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAG : GTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAG : CTTCTACTCAATGGGACAGAACACTTCCAGCAACGGTATTGTGCCGCCAGGACCAAGCAAGCAAGCAGCTACCCCGATATCATCAAGCTCCACACAGTCAACAAAAGAATTCGACTTTTCATCCTTGACACAGGGTATGTTCACAAAACGCTGAAAAACCAACAAGGAAGCATACTAGCTATTAGTATACAAATTGTTTTTTTTTCCCACAGGAAATTAGCTTTTGTTGTTCTACTCCTGTTTTGGAGATTGTAAACTAAATGTAGAGGACCAAATATTGAGTTTTCTTTAAGGTGATGGCTTGATTTGTATTTTTGTATCTGGAAAAATAAGCTCTCAAAGATTGGATGGTATTCGATTCTTTTCCTA</gDNA_template>
            <first_frame> F  L  I  Q  L  H  F  S  F  D  R  Y  L  R  V  G  E  G  R  N  Q  I  G  D  F  Y  F  P  I  A  S  L  S  V  G  *  F  A  *  T  L  A  I  V  I  M  N  E  K  A  N  V  T  K  E  L  N  A  K  H  R  K  :  I  L  E  G  L  L  K  L  P  E  N  R  E  C  A  D  C  K  A  K :   G  P  R  W  A  S  V  N  L  G  I  F  I  C  M  Q  C  S  G  I  H  R  S  L  G  V  H  I  S  K  :  V  R  S  A  T  L  D  T  W  L  P  E  Q  V  A  F  I  H   : S  M  G  N  E  R  S  N  S  F  W  E  A  E  L  P  P  N  Y  D  R  V  G  I  E  N  F  I  R  A  K :   Y  E  E  K  R  W  V  P  K  D  G  I  Q  K  S  P  S  R  V  Q  E  E  R  A  S  V  Q  W  Q  Q  N  N  D  R  S  G  R  I  H  A  A  S  S  G  C  A  S  D  E  R  K  N  I  Q  A  S  K  V  K  Q  D  V  P  A  A  R  V  S  I  P  V  P  P  R  G  P  E  H  :  V  T  S  G  Q  V  A  N  Q  T  S  Q  K  A  E  P  V  A  V  T  E  P  A  K  Q  V  P  E  A  A  S  P  P  K  V  D  Y  A  T  D  L  F  D  M  L  S  M  D  C  P  T  D  N  G  S  E  A  A  S  T  D  D  N  S  W  A  G  F  Q   : Y  T  G  V  T  N  S  V  D  Q  K  K  S  Q  S  A  A  A  S  G  I  E  D  L  F  K  D  L  P  S  I  V  P  S  A  S  S  Q  K  P  Q  K  D  A  K  N  D  I  M  S  L  F  D  K  :  S  N  I  V  S  P  F  A  M  H  Q  Q  Q  L  A  M  L  A  Q  Q  Q  S  L  L  M  A  A  A  A  A  G  G  A  V  R  L  P  V  N  A  Q  Q  S  T  N  G  T  N  M  V  N  Q  N  W  P  N  L  G  Y  Q  F  P  G  V  I  M  P  A  A  G  K  T  E  L  E  K  Y  M  Q  :  V  G  N  M  G  P  A  H  V  V  G  N  S  V  P  I  P  A  S  S :   F  Y  S  M  G  Q  N  T  S  S  N  G  I  V  P  P  G  P  S  K  Q  A  A  T  P  I  S  S  S  S  T  Q  S  T  K  E  F  D  F  S  S  L  T  Q  G  M  F  T  K  R  *  K  T  N  K  E  A  Y  *  L  L  V  Y  K  L  F  F  F  P  T  G  N  *  L  L  L  F  Y  S  C  F  G  D  C  K  L  N  V  E  D  Q  I  L  S  F  L  *  G  D  G  L  I  C  I  F  V  S  G  K  I  S  S  Q  R  L  D  G  I  R  F  F  S   </first_frame>
            <second_frame>  F  S  S  S  C  I  F  L  L  I  D  I  Y  A  S  E  R  G  G  I  R  S  A  I  F  I  F  R  *  L  L  S  P  S  V  N  S  L  K  P  L  L  S  S  S  *  M  R  R  L  M  L  L  K  S  L  M  R  S  I  E  R :   Y  *  K  D  F  L  S  C  P  R  T  G  N  V  Q  I  A  K  P   : R  V  L  D  G  Q  A  *  T  W  E  Y  L  Y  A  C  N  A  L  G  S  T  E  A  W  G  C  T  Y  Q  R :   S  D  Q  L  H  *  T  H  G  F  L  N  K  L  H  L  S  I  :  Q  W  E  M  R  G  Q  I  V  F  G  K  Q  S  C  L  Q  I  M  I  E  L  V  L  R  I  S  S  E  Q   : N  M  K  R  R  G  G  S  L  R  M  G  F  K  N  H  L  P  G  F  K  K  R  G  L  R  C  N  G  N  K  T  M  I  E  V  G  V  Y  M  Q  L  A  Q  D  V  H  L  T  R  G  K  I  F  K  P  R  K  *  S  K  M  Y  L  L  L  E  S  V  Y  Q  C  L  L  E  D  Q  S  M :   *  L  Q  V  R  L  L  T  R  Q  V  R  K  Q  S  Q  L  Q  S  L  N  Q  L  S  R  F  R  K  L  P  V  L  L  K  L  I  M  L  L  I  Y  L  T  C  F  L  W  I  V  Q  L  T  M  A  Q  K  Q  L  L  P  M  I  T  P  G  Q  A  S  S  :  I  L  G  L  Q  T  P  L  I  R  R  S  L  N  L  L  L  L  L  E  L  K  I  Y  S  R  I  Y  H  Q  L  C  L  L  P  H  R  R  S  H  R  K  M  L  K  T  I  *  *  A  F  S  T  S :   P  I  L  C  H  L  L  L  C  I  N  N  N  L  L  C  W  R  N  N  S  L  Y  *  W  L  R  L  L  Q  V  V  L  *  D  F  L  *  M  H  N  K  A  L  M  A  P  I  W  *  I  R  T  G  Q  I  *  A  I  S  S  L  E  *  *  C  Q  Q  L  V  R  L  S  W  R  N  I  C  R :   *  A  I  W  D  Q  H  M  *  L  E  T  L  C  Q  F  Q  H  P   : A  S  T  Q  W  D  R  T  L  P  A  T  V  L  C  R  Q  D  Q  A  S  K  Q  L  P  R  Y  H  Q  A  P  H  S  Q  Q  K  N  S  T  F  H  P  *  H  R  V  C  S  Q  N  A  E  K  P  T  R  K  H  T  S  Y  *  Y  T  N  C  F  F  F  P  Q  E  I  S  F  C  C  S  T  P  V  L  E  I  V  N  *  M  *  R  T  K  Y  *  V  F  F  K  V  M  A  *  F  V  F  L  Y  L  E  K  *  A  L  K  D  W  M  V  F  D  S  F  P  </second_frame>
            <third_frame>   S  H  P  V  A  F  F  F  *  *  I  F  T  R  R  R  G  E  E  S  D  R  R  F  L  F  S  D  S  F  S  L  R  R  L  I  R  L  N  P  C  Y  R  H  H  E  *  E  G  *  C  Y  *  R  A  *  C  E  A  *  K   : D  T  R  R  T  S  *  V  A  R  E  Q  G  M  C  R  L  Q  S  Q  :  G  S  *  M  G  K  R  E  P  G  N  I  Y  M  H  A  M  L  W  D  P  Q  K  P  G  G  A  H  I  K   : G  Q  I  S  Y  T  R  H  M  A  S  *  T  S  C  I  Y  P  F :   N  G  K  *  E  V  K  *  F  L  G  S  R  A  A  S  K  L  *  *  S  W  Y  *  E  F  H  P  S  K  :  I  *  R  E  E  V  G  P  *  G  W  D  S  K  I  T  F  Q  G  S  R  R  E  G  F  G  A  M  A  T  K  Q  *  *  K  W  A  Y  T  C  S  *  L  R  M  C  I  *  R  E  E  K  Y  S  S  L  E  S  E  A  R  C  T  C  C  *  S  Q  Y  T  S  A  S  *  R  T  R  A   : C  N  F  R  S  G  C  *  P  D  K  S  E  S  R  A  S  C  S  H  *  T  S  *  A  G  S  G  S  C  Q  S  S  *  S  *  L  C  Y  *  S  I  *  H  A  F  Y  G  L  S  N  *  Q  W  L  R  S  S  F  Y  R  *  *  L  L  G  R  L  P  V :   Y  W  G  Y  K  L  R  *  S  E  E  V  S  I  C  C  C  F  W  N  *  R  F  I  Q  G  F  T  I  N  C  A  F  C  L  I  A  E  A  T  E  R  C  *  K  R  Y  N  E  P  F  R  Q   : V  Q  Y  C  V  T  F  C  Y  A  S  T  T  T  C  Y  A  G  A  T  T  V  F  T  D  G  C  G  C  C  R  W  C  C  K  T  S  C  K  C  T  T  K  H  *  W  H  Q  Y  G  K  S  E  L  A  K  F  R  L  S  V  P  W  S  D  N  A  S  S  W  *  D  *  A  G  E  I  Y  A   : G  R  Q  Y  G  T  S  T  C  S  W  K  L  C  A  N  S  S  I  Q  :  L  L  L  N  G  T  E  H  F  Q  Q  R  Y  C  A  A  R  T  K  Q  A  S  S  Y  P  D  I  I  K  L  H  T  V  N  K  R  I  R  L  F  I  L  D  T  G  Y  V  H  K  T  L  K  N  Q  Q  G  S  I  L  A  I  S  I  Q  I  V  F  F  S  H  R  K  L  A  F  V  V  L  L  L  F  W  R  L  *  T  K  C  R  G  P  N  I  E  F  S  L  R  *  W  L  D  L  Y  F  C  I  W  K  N  K  L  S  K  I  G  W  Y  S  I  L  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109077" stop="109009"/>
                    <exon start="107276" stop="107218"/>
                    <exon start="107079" stop="106989"/>
                    <exon start="105938" stop="105884"/>
                    <exon start="105789" stop="105699"/>
                    <exon start="105594" stop="105360"/>
                    <exon start="104501" stop="104294"/>
                    <exon start="103829" stop="103669"/>
                    <exon start="103589" stop="103353"/>
                    <exon start="103232" stop="103174"/>
                    <exon start="102693" stop="102540"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1416</number_coding_nucleotides>
                  <number_encoded_amino_acids>472</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLAIVIMNEKANVTKELNAKHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIHSMGNERSNSFWEAELPPNYDRVGIENFIRAKYEEKRWVPKDGIQKSPSRVQEERASVQWQQNNDRSGRIHAASSGCASDERKNIQASKVKQDVPAARVSIPVPPRGPEHVTSGQVANQTSQKAEPVAVTEPAKQVPEAASPPKVDYATDLFDMLSMDCPTDNGSEAASTDDNSWAGFQYTGVTNSVDQKKSQSAAASGIEDLFKDLPSIVPSASSQKPQKDAKNDIMSLFDKSNIVSPFAMHQQQLAMLAQQQSLLMAAAAAGGAVRLPVNAQQSTNGTNMVNQNWPNLGYQFPGVIMPAAGKTELEKYMQVGNMGPAHVVGNSVPIPASSFYSMGQNTSSNGIVPPGPSKQAATPISSSSTQSTKEFDFSSLTQGMFTKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="104464" e_stop="104294"/>
            <exon e_start="103856" e_stop="103669"/>
            <exon e_start="103498" e_stop="103353"/>
            <exon e_start="103232" e_stop="102696"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.663" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104464" e_stop="104294" e_length="171"/>
          </exon>
          <intron i_serial="1" don_prob="0.663" acc_prob="0.996">
            <gDNA_intron_boundary i_start="104293" i_stop="103857" i_length="437"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103856" e_stop="103669" e_length="188"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="103668" i_stop="103499" i_length="170"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="103498" e_stop="103353" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="1.000">
            <gDNA_intron_boundary i_start="103352" i_stop="103233" i_length="120"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="103232" e_stop="102696" e_length="537"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104464" stop="104294"/>
              <exon start="103856" stop="103669"/>
              <exon start="103498" stop="103353"/>
              <exon start="103232" stop="102696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316296" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCAGAGCCAGTTGCAGTCACTGAACCAGCTAAGCAGGTTCCGGAAGCTGCCAGTCCTCCTAAAGTTGATTATGCTACTGATCTATTTGACATGCTTTCTATGGATTGTCCAACTGACAATGGCTCAGAAGCAGCTTCTACCGATGATAACTCCTGGGCAGGCTTCCAGT : CTGCTCAAGAAGCAACAAAAGCAGAAAATACTGGGGTTACAAACTCCGTTGATCAGAAGAAGTCTCAATCTGCTGCTGCTTCTGGAATTGAAGATTTATTCAAGGATTTACCATCAATTGTGCCTTCTGCCTCATCGCAGAAGCCACAGAAAGATGCTAAAAACGATATAATGAGCCTTTTCGACAAG : GTGGTGCTGTAAGACTTCCTGTAAATGCACAACAAAGCACTAATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAG : GTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAGGTATTAACCTCTGATCGTTGTTAGTTAATGTAGAACTTCAACTGTTCTTTGAGGGCCTAATGTTTGGTCTATAAATTCAACAACTTAATCCAATGCATCTATCCTGCCAATTATTTGTCATTAAGATCTCTTAAATTATGACCCCTTAATGCTCAATGTAGTGTATCCATTAACTGTTTCTTCCATTTGATTTAAAGTATCCCTCCTCTTACTCCTCTTGTTAATAATGGGTTGCGGACAGACCCCATTGAACAGTATTTTTTTAATCCATAGCTACATCTCCGGAGGTATATGATCAATTTGCATTGACAAGCTCAGTTGCCAGTCATCTTTGACTTAGTTTAATACTGATGTAGGTTATTGAATCAGTTGAACAAATTTTGATAGTTGTGCTATCTATCGTATCCAGGAGGAACAAATTTTTGGGTGCTAGTTAATTTTTCATCTTTTGATGCTCATAGTTGATCTTTTGTTCTGC</gDNA_template>
            <first_frame> K  Q  S  Q  L  Q  S  L  N  Q  L  S  R  F  R  K  L  P  V  L  L  K  L  I  M  L  L  I  Y  L  T  C  F  L  W  I  V  Q  L  T  M  A  Q  K  Q  L  L  P  M  I  T  P  G  Q  A  S  S  :  L  L  K  K  Q  Q  K  Q  K  I  L  G  L  Q  T  P  L  I  R  R  S  L  N  L  L  L  L  L  E  L  K  I  Y  S  R  I  Y  H  Q  L  C  L  L  P  H  R  R  S  H  R  K  M  L  K  T  I  *  *  A  F  S  T  R :   W  C  C  K  T  S  C  K  C  T  T  K  H  *  W  H  Q  Y  G  K  S  E  L  A  K  F  R  L  S  V  P  W  S  D  N  A  S  S  W  *  D  *  A  G  E  I  Y  A   : G  R  Q  Y  G  T  S  T  C  S  W  K  L  C  A  N  S  S  I  Q  V  L  T  S  D  R  C  *  L  M  *  N  F  N  C  S  L  R  A  *  C  L  V  Y  K  F  N  N  L  I  Q  C  I  Y  P  A  N  Y  L  S  L  R  S  L  K  L  *  P  L  N  A  Q  C  S  V  S  I  N  C  F  F  H  L  I  *  S  I  P  P  L  T  P  L  V  N  N  G  L  R  T  D  P  I  E  Q  Y  F  F  N  P  *  L  H  L  R  R  Y  M  I  N  L  H  *  Q  A  Q  L  P  V  I  F  D  L  V  *  Y  *  C  R  L  L  N  Q  L  N  K  F  *  *  L  C  Y  L  S  Y  P  G  G  T  N  F  W  V  L  V  N  F  S  S  F  D  A  H  S  *  S  F  V  L  </first_frame>
            <second_frame>  S  R  A  S  C  S  H  *  T  S  *  A  G  S  G  S  C  Q  S  S  *  S  *  L  C  Y  *  S  I  *  H  A  F  Y  G  L  S  N  *  Q  W  L  R  S  S  F  Y  R  *  *  L  L  G  R  L  P  V :   C  S  R  S  N  K  S  R  K  Y  W  G  Y  K  L  R  *  S  E  E  V  S  I  C  C  C  F  W  N  *  R  F  I  Q  G  F  T  I  N  C  A  F  C  L  I  A  E  A  T  E  R  C  *  K  R  Y  N  E  P  F  R  Q   : G  G  A  V  R  L  P  V  N  A  Q  Q  S  T  N  G  T  N  M  V  N  Q  N  W  P  N  L  G  Y  Q  F  P  G  V  I  M  P  A  A  G  K  T  E  L  E  K  Y  M  Q  :  V  G  N  M  G  P  A  H  V  V  G  N  S  V  P  I  P  A  S  R  Y  *  P  L  I  V  V  S  *  C  R  T  S  T  V  L  *  G  P  N  V  W  S  I  N  S  T  T  *  S  N  A  S  I  L  P  I  I  C  H  *  D  L  L  N  Y  D  P  L  M  L  N  V  V  Y  P  L  T  V  S  S  I  *  F  K  V  S  L  L  L  L  L  L  L  I  M  G  C  G  Q  T  P  L  N  S  I  F  L  I  H  S  Y  I  S  G  G  I  *  S  I  C  I  D  K  L  S  C  Q  S  S  L  T  *  F  N  T  D  V  G  Y  *  I  S  *  T  N  F  D  S  C  A  I  Y  R  I  Q  E  E  Q  I  F  G  C  *  L  I  F  H  L  L  M  L  I  V  D  L  L  F  C </second_frame>
            <third_frame>   A  E  P  V  A  V  T  E  P  A  K  Q  V  P  E  A  A  S  P  P  K  V  D  Y  A  T  D  L  F  D  M  L  S  M  D  C  P  T  D  N  G  S  E  A  A  S  T  D  D  N  S  W  A  G  F  Q   : S  A  Q  E  A  T  K  A  E  N  T  G  V  T  N  S  V  D  Q  K  K  S  Q  S  A  A  A  S  G  I  E  D  L  F  K  D  L  P  S  I  V  P  S  A  S  S  Q  K  P  Q  K  D  A  K  N  D  I  M  S  L  F  D  K  :  V  V  L  *  D  F  L  *  M  H  N  K  A  L  M  A  P  I  W  *  I  R  T  G  Q  I  *  A  I  S  S  L  E  *  *  C  Q  Q  L  V  R  L  S  W  R  N  I  C  R :   *  A  I  W  D  Q  H  M  *  L  E  T  L  C  Q  F  Q  H  P  G  I  N  L  *  S  L  L  V  N  V  E  L  Q  L  F  F  E  G  L  M  F  G  L  *  I  Q  Q  L  N  P  M  H  L  S  C  Q  L  F  V  I  K  I  S  *  I  M  T  P  *  C  S  M  *  C  I  H  *  L  F  L  P  F  D  L  K  Y  P  S  S  Y  S  S  C  *  *  W  V  A  D  R  P  H  *  T  V  F  F  *  S  I  A  T  S  P  E  V  Y  D  Q  F  A  L  T  S  S  V  A  S  H  L  *  L  S  L  I  L  M  *  V  I  E  S  V  E  Q  I  L  I  V  V  L  S  I  V  S  R  R  N  K  F  L  G  A  S  *  F  F  I  F  *  C  S  *  L  I  F  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104462" stop="104294"/>
                    <exon start="103856" stop="103669"/>
                    <exon start="103498" stop="103487"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AEPVAVTEPAKQVPEAASPPKVDYATDLFDMLSMDCPTDNGSEAASTDDNSWAGFQSAQEATKAENTGVTNSVDQKKSQSAAASGIEDLFKDLPSIVPSASSQKPQKDAKNDIMSLFDKVVL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104464" stop="104294"/>
                    <exon start="103856" stop="103686"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQSQLQSLNQLSRFRKLPVLLKLIMLLIYLTCFLWIVQLTMAQKQLLPMITPGQASSLLKKQQKQKILGLQTPLIRRSLNLLLLLELKIYSRIYHQLCLLPHRRSHRKMLKTI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="109929" PGL_stop="112857"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109929" e_stop="110052"/>
            <exon e_start="110963" e_stop="111033"/>
            <exon e_start="111794" e_stop="111883"/>
            <exon e_start="112268" e_stop="112857"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.966" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109929" e_stop="110052" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="110053" i_stop="110962" i_length="910"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="110963" e_stop="111033" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.000">
            <gDNA_intron_boundary i_start="111034" i_stop="111793" i_length="760"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111794" e_stop="111883" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.966">
            <gDNA_intron_boundary i_start="111884" i_stop="112267" i_length="384"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="112268" e_stop="112857" e_length="590"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109929" stop="110052"/>
              <exon start="110963" stop="111033"/>
              <exon start="111794" stop="111883"/>
              <exon start="112268" stop="112857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317254" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGGCGTGGACGGCGGCGGCGAGGCAAGCAGCGAACCTATATCGATTCTCAGCTTCTAAATCAGTTAGCTCAACGAAGCAAGGCGCTTTACTTATCCAGCGGCGCGGCCTTGCCGGCGGTGGTG : ATCATCATGGACCTCCAAAGGTGAATTTTTGGCAGGATCCGATGAGTCCGTCTAAATGGAAAGAAGAGCAT : TTTGTGATCGTCTCTCTTACTGGTTGGGGGTTGGCCTTCTATGGAGGTTATAAGCTCTTCACAAAGGGAAAGAAAGAGGAGAAGGAAGAG : AAAGTTGGTGAAGGATCCCACTAATATTTGACGTGCCGAATGCCTTGAATAAAGAAGTTAGAAAGGGCTATGTGGTCCTCAATTTTTGCCATGATGAATATTACAATGACTTTTCCCCCATTTCCTCCACTTCCCTTGTTGGGACTGAATTGCATATGAAATACTGGACAATCAACTATGTAATTTCTTTTTTTGCTTTCTGTAGAATGTTGGTTCATTTAGGAACATTTTGCCTGCTGAGGATATGATGTTTCTTCTTGTTGGAACAACTTTCGCTACCCATTTGCATAATGATCATGAGTATGTTGAAGAAACCACAGTTTTCTTTATGTGTCGTTCTAACCCATTTGAATGTCTATGTCTGGGTTGATGGAGCTCAATGAGTCAGATGCAGCAAGCTCATTAGCTTCGTCAAGCTGTTTCTATCTGTTGTGCTTTTGGTCATTTGGTGCCTCTTTCCATGTATGTTAAGACTATGGGAGATGGTAAAAGATTACCTATTTATACAATTCTAGCTATTGAAGGCAGGAAACTGAATGTAATAAGTTGATAGAAACATGTAACATTTTAAGTTATGGTTTTTACACAAC</gDNA_template>
            <first_frame> A  A  W  T  A  A  A  R  Q  A  A  N  L  Y  R  F  S  A  S  K  S  V  S  S  T  K  Q  G  A  L  L  I  Q  R  R  G  L  A  G  G  G   : D  H  H  G  P  P  K  V  N  F  W  Q  D  P  M  S  P  S  K  W  K  E  E  H  :  F  V  I  V  S  L  T  G  W  G  L  A  F  Y  G  G  Y  K  L  F  T  K  G  K  K  E  E  K  E  E  :  K  V  G  E  G  S  H  *  Y  L  T  C  R  M  P  *  I  K  K  L  E  R  A  M  W  S  S  I  F  A  M  M  N  I  T  M  T  F  P  P  F  P  P  L  P  L  L  G  L  N  C  I  *  N  T  G  Q  S  T  M  *  F  L  F  L  L  S  V  E  C  W  F  I  *  E  H  F  A  C  *  G  Y  D  V  S  S  C  W  N  N  F  R  Y  P  F  A  *  *  S  *  V  C  *  R  N  H  S  F  L  Y  V  S  F  *  P  I  *  M  S  M  S  G  L  M  E  L  N  E  S  D  A  A  S  S  L  A  S  S  S  C  F  Y  L  L  C  F  W  S  F  G  A  S  F  H  V  C  *  D  Y  G  R  W  *  K  I  T  Y  L  Y  N  S  S  Y  *  R  Q  E  T  E  C  N  K  L  I  E  T  C  N  I  L  S  Y  G  F  Y  T   </first_frame>
            <second_frame>  R  R  G  R  R  R  R  G  K  Q  R  T  Y  I  D  S  Q  L  L  N  Q  L  A  Q  R  S  K  A  L  Y  L  S  S  G  A  A  L  P  A  V  V  :  I  I  M  D  L  Q  R  *  I  F  G  R  I  R  *  V  R  L  N  G  K  K  S  I :   L  *  S  S  L  L  L  V  G  G  W  P  S  M  E  V  I  S  S  S  Q  R  E  R  K  R  R  R  K  R :   K  L  V  K  D  P  T  N  I  *  R  A  E  C  L  E  *  R  S  *  K  G  L  C  G  P  Q  F  L  P  *  *  I  L  Q  *  L  F  P  H  F  L  H  F  P  C  W  D  *  I  A  Y  E  I  L  D  N  Q  L  C  N  F  F  F  C  F  L  *  N  V  G  S  F  R  N  I  L  P  A  E  D  M  M  F  L  L  V  G  T  T  F  A  T  H  L  H  N  D  H  E  Y  V  E  E  T  T  V  F  F  M  C  R  S  N  P  F  E  C  L  C  L  G  *  W  S  S  M  S  Q  M  Q  Q  A  H  *  L  R  Q  A  V  S  I  C  C  A  F  G  H  L  V  P  L  S  M  Y  V  K  T  M  G  D  G  K  R  L  P  I  Y  T  I  L  A  I  E  G  R  K  L  N  V  I  S  *  *  K  H  V  T  F  *  V  M  V  F  T  Q  </second_frame>
            <third_frame>   G  V  D  G  G  G  E  A  S  S  E  P  I  S  I  L  S  F  *  I  S  *  L  N  E  A  R  R  F  T  Y  P  A  A  R  P  C  R  R  W  * :   S  S  W  T  S  K  G  E  F  L  A  G  S  D  E  S  V  *  M  E  R  R  A   : F  C  D  R  L  S  Y  W  L  G  V  G  L  L  W  R  L  *  A  L  H  K  G  K  E  R  G  E  G  R   : E  S  W  *  R  I  P  L  I  F  D  V  P  N  A  L  N  K  E  V  R  K  G  Y  V  V  L  N  F  C  H  D  E  Y  Y  N  D  F  S  P  I  S  S  T  S  L  V  G  T  E  L  H  M  K  Y  W  T  I  N  Y  V  I  S  F  F  A  F  C  R  M  L  V  H  L  G  T  F  C  L  L  R  I  *  C  F  F  L  L  E  Q  L  S  L  P  I  C  I  M  I  M  S  M  L  K  K  P  Q  F  S  L  C  V  V  L  T  H  L  N  V  Y  V  W  V  D  G  A  Q  *  V  R  C  S  K  L  I  S  F  V  K  L  F  L  S  V  V  L  L  V  I  W  C  L  F  P  C  M  L  R  L  W  E  M  V  K  D  Y  L  F  I  Q  F  *  L  L  K  A  G  N  *  M  *  *  V  D  R  N  M  *  H  F  K  L  W  F  L  H  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109929" stop="110052"/>
                    <exon start="110963" stop="111033"/>
                    <exon start="111794" stop="111883"/>
                    <exon start="112268" stop="112291"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AAWTAAARQAANLYRFSASKSVSSTKQGALLIQRRGLAGGGDHHGPPKVNFWQDPMSPSKWKEEHFVIVSLTGWGLAFYGGYKLFTKGKKEEKEEKVGEGSH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112279" stop="112515"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIPLIFDVPNALNKEVRKGYVVLNFCHDEYYNDFSPISSTSLVGTELHMKYWTINYVISFFAFCRMLVHLGTFCLLRI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="115307" PGL_stop="112933"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115307" e_stop="115305"/>
            <exon e_start="115254" e_stop="115199"/>
            <exon e_start="114547" e_stop="114449"/>
            <exon e_start="113899" e_stop="113810"/>
            <exon e_start="113331" e_stop="112933"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.839" e_score="0.667"/>
          <exon-intron don_prob="0.966" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="0.970"/>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.667">
            <gDNA_exon_boundary e_start="115307" e_stop="115305" e_length="3"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.839">
            <gDNA_intron_boundary i_start="115304" i_stop="115255" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="115254" e_stop="115199" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.990">
            <gDNA_intron_boundary i_start="115198" i_stop="114548" i_length="651"/>
          </intron>
          <exon e_serial="3" e_score="0.970">
            <gDNA_exon_boundary e_start="114547" e_stop="114449" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="114448" i_stop="113900" i_length="549"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="113899" e_stop="113810" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="113809" i_stop="113332" i_length="478"/>
          </intron>
          <exon e_serial="5" e_score="0.900">
            <gDNA_exon_boundary e_start="113331" e_stop="112933" e_length="399"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115307" stop="115305"/>
              <exon start="115254" stop="115199"/>
              <exon start="114547" stop="114449"/>
              <exon start="113899" stop="113810"/>
              <exon start="113331" stop="112933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339859" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGG : GTCTACTTTAAATGATGAGGTTCAGCTTTGCCCTTTCTGTACTCAGCCATTCTCAG : TTGTTGGCAATAAGTTCGTGAGAGACCCAGTAACGTTCTCCAACCAGTCAACTACATTTGGTCAAGCATTTGGTGATTTCAGTACTCGTTCTAAGAAAG : GTAAGAATTCCTCTGTCGGAATTGTTGATATAGAAGCAGAAGTTAAGGACGCGGACTAGGCAGTGGTCTCCAGTCATACAGTAGCATATG : GGATTATGAGAAGCAGCAGCAGCAGCTGAACGGGAAGAAGACAAGAACATACCATGTCAGTATGAAGAGAAGCTTCTCACAAGCACTGTGCTGTTATGAAATACTAAAGAACACCACGTTTAGCATAGGTTATCATGCATGACTGTACAGTCGCGAACACATAATCAACATATTATAGAGTATTGCTGATTATGTTAGAAAAAAGTGTTGATTGCAGTTGCCCCATAGTATACCATAGCATTGGATAAGCTTATCATGTTTGTGAAAATACTTTCTAGCTTCTCATCTGTTGATTGTATTATGATGTAGTAAACAATAACATACCCCGTGTAATTTGTAGTTCTACAAGTGGGATCTTTGAAGGTTGGGATGTATGCACACCTTATCCTCGCTTTCCTA</gDNA_template>
            <first_frame> G  :  V  Y  F  K  *  *  G  S  A  L  P  F  L  Y  S  A  I  L  S :   C  W  Q  *  V  R  E  R  P  S  N  V  L  Q  P  V  N  Y  I  W  S  S  I  W  *  F  Q  Y  S  F  *  E  R :   *  E  F  L  C  R  N  C  *  Y  R  S  R  S  *  G  R  G  L  G  S  G  L  Q  S  Y  S  S  I  W :   D  Y  E  K  Q  Q  Q  Q  L  N  G  K  K  T  R  T  Y  H  V  S  M  K  R  S  F  S  Q  A  L  C  C  Y  E  I  L  K  N  T  T  F  S  I  G  Y  H  A  *  L  Y  S  R  E  H  I  I  N  I  L  *  S  I  A  D  Y  V  R  K  K  C  *  L  Q  L  P  H  S  I  P  *  H  W  I  S  L  S  C  L  *  K  Y  F  L  A  S  H  L  L  I  V  L  *  C  S  K  Q  *  H  T  P  C  N  L  *  F  Y  K  W  D  L  *  R  L  G  C  M  H  T  L  S  S  L  S   </first_frame>
            <second_frame>  G :   S  T  L  N  D  E  V  Q  L  C  P  F  C  T  Q  P  F  S   : V  V  G  N  K  F  V  R  D  P  V  T  F  S  N  Q  S  T  T  F  G  Q  A  F  G  D  F  S  T  R  S  K  K   : G  K  N  S  S  V  G  I  V  D  I  E  A  E  V  K  D  A  D  *  A  V  V  S  S  H  T  V  A  Y   : G  I  M  R  S  S  S  S  S  *  T  G  R  R  Q  E  H  T  M  S  V  *  R  E  A  S  H  K  H  C  A  V  M  K  Y  *  R  T  P  R  L  A  *  V  I  M  H  D  C  T  V  A  N  T  *  S  T  Y  Y  R  V  L  L  I  M  L  E  K  S  V  D  C  S  C  P  I  V  Y  H  S  I  G  *  A  Y  H  V  C  E  N  T  F  *  L  L  I  C  *  L  Y  Y  D  V  V  N  N  N  I  P  R  V  I  C  S  S  T  S  G  I  F  E  G  W  D  V  C  T  P  Y  P  R  F  P  </second_frame>
            <third_frame>    : G  L  L  *  M  M  R  F  S  F  A  L  S  V  L  S  H  S  Q  :  L  L  A  I  S  S  *  E  T  Q  *  R  S  P  T  S  Q  L  H  L  V  K  H  L  V  I  S  V  L  V  L  R  K  :  V  R  I  P  L  S  E  L  L  I  *  K  Q  K  L  R  T  R  T  R  Q  W  S  P  V  I  Q  *  H  M  :  G  L  *  E  A  A  A  A  A  E  R  E  E  D  K  N  I  P  C  Q  Y  E  E  K  L  L  T  S  T  V  L  L  *  N  T  K  E  H  H  V  *  H  R  L  S  C  M  T  V  Q  S  R  T  H  N  Q  H  I  I  E  Y  C  *  L  C  *  K  K  V  L  I  A  V  A  P  *  Y  T  I  A  L  D  K  L  I  M  F  V  K  I  L  S  S  F  S  S  V  D  C  I  M  M  *  *  T  I  T  Y  P  V  *  F  V  V  L  Q  V  G  S  L  K  V  G  M  Y  A  H  L  I  L  A  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115306" stop="115305"/>
                    <exon start="115254" stop="115199"/>
                    <exon start="114547" stop="114449"/>
                    <exon start="113899" stop="113841"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSTLNDEVQLCPFCTQPFSVVGNKFVRDPVTFSNQSTTFGQAFGDFSTRSKKGKNSSVGIVDIEAEVKDAD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="113526" e_stop="112961"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="113526" e_stop="112961" e_length="566"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113526" stop="112961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339858" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATACTATAGTTGTTATCGTTGGCTTCTGGTATGACATAATTTGCTGTATATAATTGATTTGAACGTAGACATTATACAGCTTCCCAAGATAACAACATGGATGTTGATTTGTTCTTTTAGCAGTCCTTTGTTGGTCTTGTCCTATTATGTATGAGGCTGCTTCTTTTTCTTCTTTCATAAAAATCATCATCTAGGGATTATGAGAAGCAGCAGCAGCAGCTGAACGGGAAGAAGACAAGAACATACCATGTCAGTATGAAGAGAAGCTTCTCACAAGCACTGTGCTGTTATGAAATACTAAAGAACACCACGTTTAGCATAGGTTATCATGCATGACTGTACAGTCGCGAACACATAATCAACATATTATAGAGTATTGCTGATTATGTTAGAAAAAAGTGTTGATTGCAGTTGCCCCATAGTATACCATAGCATTGGATAAGCTTATCATGTTTGTGAAAATACTTTCTAGCTTCTCATCTGTTGATTGTATTATGATGTAGTAAACAATAACATACCCCGTGTAATTTGTAGTTCTACAAGTGGGATCTTTGAAGGTTGGGAT</gDNA_template>
            <first_frame> Y  T  I  V  V  I  V  G  F  W  Y  D  I  I  C  C  I  *  L  I  *  T  *  T  L  Y  S  F  P  R  *  Q  H  G  C  *  F  V  L  L  A  V  L  C  W  S  C  P  I  M  Y  E  A  A  S  F  S  S  F  I  K  I  I  I  *  G  L  *  E  A  A  A  A  A  E  R  E  E  D  K  N  I  P  C  Q  Y  E  E  K  L  L  T  S  T  V  L  L  *  N  T  K  E  H  H  V  *  H  R  L  S  C  M  T  V  Q  S  R  T  H  N  Q  H  I  I  E  Y  C  *  L  C  *  K  K  V  L  I  A  V  A  P  *  Y  T  I  A  L  D  K  L  I  M  F  V  K  I  L  S  S  F  S  S  V  D  C  I  M  M  *  *  T  I  T  Y  P  V  *  F  V  V  L  Q  V  G  S  L  K  V  G   </first_frame>
            <second_frame>  I  L  *  L  L  S  L  A  S  G  M  T  *  F  A  V  Y  N  *  F  E  R  R  H  Y  T  A  S  Q  D  N  N  M  D  V  D  L  F  F  *  Q  S  F  V  G  L  V  L  L  C  M  R  L  L  L  F  L  L  S  *  K  S  S  S  R  D  Y  E  K  Q  Q  Q  Q  L  N  G  K  K  T  R  T  Y  H  V  S  M  K  R  S  F  S  Q  A  L  C  C  Y  E  I  L  K  N  T  T  F  S  I  G  Y  H  A  *  L  Y  S  R  E  H  I  I  N  I  L  *  S  I  A  D  Y  V  R  K  K  C  *  L  Q  L  P  H  S  I  P  *  H  W  I  S  L  S  C  L  *  K  Y  F  L  A  S  H  L  L  I  V  L  *  C  S  K  Q  *  H  T  P  C  N  L  *  F  Y  K  W  D  L  *  R  L  G  </second_frame>
            <third_frame>   Y  Y  S  C  Y  R  W  L  L  V  *  H  N  L  L  Y  I  I  D  L  N  V  D  I  I  Q  L  P  K  I  T  T  W  M  L  I  C  S  F  S  S  P  L  L  V  L  S  Y  Y  V  *  G  C  F  F  F  F  F  H  K  N  H  H  L  G  I  M  R  S  S  S  S  S  *  T  G  R  R  Q  E  H  T  M  S  V  *  R  E  A  S  H  K  H  C  A  V  M  K  Y  *  R  T  P  R  L  A  *  V  I  M  H  D  C  T  V  A  N  T  *  S  T  Y  Y  R  V  L  L  I  M  L  E  K  S  V  D  C  S  C  P  I  V  Y  H  S  I  G  *  A  Y  H  V  C  E  N  T  F  *  L  L  I  C  *  L  Y  Y  D  V  V  N  N  N  I  P  R  V  I  C  S  S  T  S  G  I  F  E  G  W  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0140O20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="122290" PGL_stop="118691"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122290" e_stop="122226"/>
            <exon e_start="120841" e_stop="120545"/>
            <exon e_start="120442" e_stop="120320"/>
            <exon e_start="119909" e_stop="119619"/>
            <exon e_start="119122" e_stop="118691"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.863" e_score="1.000"/>
          <exon-intron don_prob="0.530" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.758" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="122290" e_stop="122226" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.863">
            <gDNA_intron_boundary i_start="122225" i_stop="120842" i_length="1384"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120841" e_stop="120545" e_length="297"/>
          </exon>
          <intron i_serial="2" don_prob="0.530" acc_prob="0.997">
            <gDNA_intron_boundary i_start="120544" i_stop="120443" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120442" e_stop="120320" e_length="123"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.758">
            <gDNA_intron_boundary i_start="120319" i_stop="119910" i_length="410"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="119909" e_stop="119619" e_length="291"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="119618" i_stop="119123" i_length="496"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="119122" e_stop="118691" e_length="432"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122290" stop="122226"/>
              <exon start="120841" stop="120545"/>
              <exon start="120442" stop="120320"/>
              <exon start="119909" stop="119619"/>
              <exon start="119122" stop="118691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317611" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATATTATTCACAAGAATCCCAACAATTTGTTCATTGCATTTGACGCCCATTTCTAGAGACTTT : GTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATT : GTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAG : CCTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACATATCCGTTTCACTGGCATTGTACTCTCTTGTGGTTTTCTACCACGTGTTTGCGAAGGAGTTGGCGCCTCACAAGCCACTAGCCAAGTTCCTGTGTGTCAAAGGAATTGTCTTTTTCGTCTTCTGGCAG : GGCATTCTGCTTAGTGTTCTGGTATCACTAGGCATAATAAAATCTCACTATTTCTGGCTTGAGGTGGAGCGCCTTCAGGAAGGTATGCAGAATGAACTAGTGATCCTGGAGATGGTTTTCTTCGCTATCCTTATGCGTCATGCATACAGTGCAGCGCCATATCGCGCAGAAGCTGTTACAACTACTTCAGAAGATGCTACTTCTGGAGATAAAAAGAATGAGTGATTATGCAACATGTATTGTTGTAAAAAAATTATCTTCAGACATCACTCACTTCCTCATATTGCTTGTATGTTATGTTGGATTTGCTTGTTGATGTTATAATAGATTCCTACTACAGATCAACTAGAACATTTTGTGAGTGTTAATTAGCACTGAATCCCTTTCATTCTGAGGCAATGAATACTTCATTTGAAATAAAACAGAGAAGCA</gDNA_template>
            <first_frame> E  Y  Y  S  Q  E  S  Q  Q  F  V  H  C  I  *  R  P  F  L  E  T  L :   F  D  F  G  F  L  V  G  *  Q  Q  I  W  N  W  I  W  I  V  G  K  S  H  *  *  H  P  V  Y  V  L  C  *  L  Y  I  S  A  Y  S  *  *  Q  N  I  L  R  H  G  R  S  L  K  S  K  R  P  *  L  L  S  S  S  W  H  L  C  M  L  L  S  P  S  L  G  W  S  I  S  W  E  A  N  P  F  S  L  S  W  N  L  S  K  N  V  M  K  Q  L :   *  W  L  S  S  W  G  *  C  T  L  T  *  I  Y  P  *  A  K  T  *  S  L  M  K  L  R  E  D  R  F  T  T  H  S  Q  *  H  S  S  S :   L  T  L  L  I  *  T  I  I  H  *  S  F  S  R  T  G  H  G  S  L  L  *  F  A  L  Y  A  L  F  *  *  L  F  Y  K  C  L  E  C  T  L  V  G  L  A  G  P  L  P  S  F  *  T  Y  P  F  H  W  H  C  T  L  L  W  F  S  T  T  C  L  R  R  S  W  R  L  T  S  H  *  P  S  S  C  V  S  K  E  L  S  F  S  S  S  G  R :   A  F  C  L  V  F  W  Y  H  *  A  *  *  N  L  T  I  S  G  L  R  W  S  A  F  R  K  V  C  R  M  N  *  *  S  W  R  W  F  S  S  L  S  L  C  V  M  H  T  V  Q  R  H  I  A  Q  K  L  L  Q  L  L  Q  K  M  L  L  L  E  I  K  R  M  S  D  Y  A  T  C  I  V  V  K  K  L  S  S  D  I  T  H  F  L  I  L  L  V  C  Y  V  G  F  A  C  *  C  Y  N  R  F  L  L  Q  I  N  *  N  I  L  *  V  L  I  S  T  E  S  L  S  F  *  G  N  E  Y  F  I  *  N  K  T  E  K   </first_frame>
            <second_frame>  N  I  I  H  K  N  P  N  N  L  F  I  A  F  D  A  H  F  *  R  L   : C  L  I  L  V  F  L  L  A  N  N  K  Y  G  I  G  S  G  S  W  A  S  H  T  D  S  I  Q  Y  M  S  Y  A  D  F  T  F  Q  H  T  A  S  D  R  T  F  Y  V  M  E  E  A  *  R  A  K  G  H  N  Y  Y  R  P  H  G  T  F  V  C  Y  C  L  L  H  W  V  G  R  F  H  G  K  Q  T  L  F  H  F  L  G  I  C  Q  R  M  L  *  S  N   : C  D  G  *  V  P  G  V  D  V  H  L  L  E  Y  I  H  K  Q  K  H  S  P  *  *  N  *  G  K  T  D  S  P  L  I  P  N  D  T  L  P   : A  S  H  C  S  F  E  P  S  Y  I  E  A  S  Q  E  L  D  M  A  V  C  C  D  S  P  C  M  L  Y  F  N  D  C  F  T  N  V  W  S  V  P  *  L  G  *  L  D  L  Y  H  H  F  K  H  I  R  F  T  G  I  V  L  S  C  G  F  L  P  R  V  C  E  G  V  G  A  S  Q  A  T  S  Q  V  P  V  C  Q  R  N  C  L  F  R  L  L  A   : G  H  S  A  *  C  S  G  I  T  R  H  N  K  I  S  L  F  L  A  *  G  G  A  P  S  G  R  Y  A  E  *  T  S  D  P  G  D  G  F  L  R  Y  P  Y  A  S  C  I  Q  C  S  A  I  S  R  R  S  C  Y  N  Y  F  R  R  C  Y  F  W  R  *  K  E  *  V  I  M  Q  H  V  L  L  *  K  N  Y  L  Q  T  S  L  T  S  S  Y  C  L  Y  V  M  L  D  L  L  V  D  V  I  I  D  S  Y  Y  R  S  T  R  T  F  C  E  C  *  L  A  L  N  P  F  H  S  E  A  M  N  T  S  F  E  I  K  Q  R  S  </second_frame>
            <third_frame>   I  L  F  T  R  I  P  T  I  C  S  L  H  L  T  P  I  S  R  D  F  :  V  *  F  W  F  S  C  W  L  T  T  N  M  E  L  D  L  D  R  G  Q  V  T  L  I  A  S  S  I  C  L  M  L  T  L  H  F  S  I  Q  L  V  T  E  H  F  T  S  W  K  K  P  K  E  Q  K  A  I  I  I  I  V  L  M  A  P  L  Y  A  I  V  S  F  I  G  L  V  D  F  M  G  S  K  P  F  F  T  F  L  E  S  V  K  E  C  Y  E  A  I  :  V  M  A  K  F  L  G  L  M  Y  T  Y  L  N  I  S  I  S  K  N  I  V  P  D  E  I  K  G  R  Q  I  H  H  S  F  P  M  T  L  F  Q  :  P  H  T  A  H  L  N  H  H  T  L  K  L  L  K  N  W  T  W  Q  F  V  V  I  R  P  V  C  S  I  L  M  I  V  L  Q  M  F  G  V  Y  P  S  W  V  S  W  T  F  T  I  I  L  N  I  S  V  S  L  A  L  Y  S  L  V  V  F  Y  H  V  F  A  K  E  L  A  P  H  K  P  L  A  K  F  L  C  V  K  G  I  V  F  F  V  F  W  Q  :  G  I  L  L  S  V  L  V  S  L  G  I  I  K  S  H  Y  F  W  L  E  V  E  R  L  Q  E  G  M  Q  N  E  L  V  I  L  E  M  V  F  F  A  I  L  M  R  H  A  Y  S  A  A  P  Y  R  A  E  A  V  T  T  T  S  E  D  A  T  S  G  D  K  K  N  E  *  L  C  N  M  Y  C  C  K  K  I  I  F  R  H  H  S  L  P  H  I  A  C  M  L  C  W  I  C  L  L  M  L  *  *  I  P  T  T  D  Q  L  E  H  F  V  S  V  N  *  H  *  I  P  F  I  L  R  Q  *  I  L  H  L  K  *  N  R  E  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120835" stop="120545"/>
                    <exon start="120442" stop="120320"/>
                    <exon start="119909" stop="119619"/>
                    <exon start="119122" stop="118898"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>927</number_coding_nucleotides>
                  <number_encoded_amino_acids>309</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FWFSCWLTTNMELDLDRGQVTLIASSICLMLTLHFSIQLVTEHFTSWKKPKEQKAIIIIVLMAPLYAIVSFIGLVDFMGSKPFFTFLESVKECYEAIVMAKFLGLMYTYLNISISKNIVPDEIKGRQIHHSFPMTLFQPHTAHLNHHTLKLLKNWTWQFVVIRPVCSILMIVLQMFGVYPSWVSWTFTIILNISVSLALYSLVVFYHVFAKELAPHKPLAKFLCVKGIVFFVFWQGILLSVLVSLGIIKSHYFWLEVERLQEGMQNELVILEMVFFAILMRHAYSAAPYRAEAVTTTSEDATSGDKKNE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="122184" e_stop="121728"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="122184" e_stop="121728" e_length="457"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122184" stop="121728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344341" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTTTAGCTCCTACACTCATTAGCTATACTTTTTATGTTGAAGTCATTATGTATTTTGTTGGGATTAACCATAAGAAGTCACTTATGTAGATATTTTACTTGTTTAGATTACAATATTGTTGAAAGATCAAATTTTTACTTTTCTTGAAAATGTTGCATCGGTTTTTTAGTGCAGCAGCTGGATCCTTGATGTTTTTTTCTTGGGTGAATCTTGAAATAACCATGATTGTGTTGTAGCCTAGCTAGTTTCAATATAGCTTGTTTGAGTTCAAATTGGCCTTGTGATTTGTAAAGGGTTTGTCTTTTTGATGATTTTTAGGTCATAAAAGTACAAGGTCAACAGCTGAGGAAACTAGAGGTGAGGCAGAGTGATTAGCTTAGTTTGTAATTTCATATTGTTCTTGGGCAAAAGACCCAAAAGTTACTCACTGAGGCACTCACTGTTAGCTAAAATAT</gDNA_template>
            <first_frame> F  F  S  S  Y  T  H  *  L  Y  F  L  C  *  S  H  Y  V  F  C  W  D  *  P  *  E  V  T  Y  V  D  I  L  L  V  *  I  T  I  L  L  K  D  Q  I  F  T  F  L  E  N  V  A  S  V  F  *  C  S  S  W  I  L  D  V  F  F  L  G  E  S  *  N  N  H  D  C  V  V  A  *  L  V  S  I  *  L  V  *  V  Q  I  G  L  V  I  C  K  G  F  V  F  L  M  I  F  R  S  *  K  Y  K  V  N  S  *  G  N  *  R  *  G  R  V  I  S  L  V  C  N  F  I  L  F  L  G  K  R  P  K  S  Y  S  L  R  H  S  L  L  A  K  I  </first_frame>
            <second_frame>  S  L  A  P  T  L  I  S  Y  T  F  Y  V  E  V  I  M  Y  F  V  G  I  N  H  K  K  S  L  M  *  I  F  Y  L  F  R  L  Q  Y  C  *  K  I  K  F  L  L  F  L  K  M  L  H  R  F  F  S  A  A  A  G  S  L  M  F  F  S  W  V  N  L  E  I  T  M  I  V  L  *  P  S  *  F  Q  Y  S  L  F  E  F  K  L  A  L  *  F  V  K  G  L  S  F  *  *  F  L  G  H  K  S  T  R  S  T  A  E  E  T  R  G  E  A  E  *  L  A  *  F  V  I  S  Y  C  S  W  A  K  D  P  K  V  T  H  *  G  T  H  C  *  L  K  Y </second_frame>
            <third_frame>   L  *  L  L  H  S  L  A  I  L  F  M  L  K  S  L  C  I  L  L  G  L  T  I  R  S  H  L  C  R  Y  F  T  C  L  D  Y  N  I  V  E  R  S  N  F  Y  F  S  *  K  C  C  I  G  F  L  V  Q  Q  L  D  P  *  C  F  F  L  G  *  I  L  K  *  P  *  L  C  C  S  L  A  S  F  N  I  A  C  L  S  S  N  W  P  C  D  L  *  R  V  C  L  F  D  D  F  *  V  I  K  V  Q  G  Q  Q  L  R  K  L  E  V  R  Q  S  D  *  L  S  L  *  F  H  I  V  L  G  Q  K  T  Q  K  L  L  T  E  A  L  T  V  S  *  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0140O20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 46 chains have been computed
$ 
$ memory statistics:
$ 73448 bytes spliced alignments in total
$ 35 spliced alignments have been stored
$ 2098 bytes was the average size of a spliced alignment
$ 30544 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1527 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 54 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-18 00:17:41
-->
