<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-10 08:35:29"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0165I16-8Bh7R/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-ebPY5O/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ebPY5O/lycopersicum_combined_unigene_seqs" ref_id="SGN-U337341" ref_strand="+" ref_description="SGN-U337341        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: SJCHGC09205(evalue: 5e-05, score=51.2)">
      <seq>taccctaggcataaaagggtcactgtaacgattcaaaaaaaaagaatgatataaataagaataaataggtatttaagggcataattgtcctttcacgttttaaatgaataaataaataaataagtaaataaataaaatagatttgtatttatttattttaaatgttatttgactaattcttgaattagtctcctaatccaaatagtcctctctctctcacgcttcttaactccctctctcacgtcctccatcttcctcacattatttctgacaaaacatcaacagttttcatgcttgaagaactaacaaaaattttttaagcaaaagaaaaagtaatcaaaacgtcaaggctaagagaggtttgtcgagagaggtgtacgttgaagtgaattgggagtgctttggaggagttttccgggtaacaacattaaagtttgaacatcgattaaggtatgagttttcttctctctcggtccctttccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0165I16-8Bh7R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0165I16.1" temp_strand="+" temp_description="C07HBa0165I16.1  AC217497.1 htgs_phase:2 submitted_to_sgn_as:gi|167832399|gb|AC217497.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0165I16, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="1865" stop="2917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2165" g_stop="2617" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="484" r_length="461" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0165I16.1" gen_strand="+" ref_id="SGN-U337341" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0165I16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U337341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2165" e_stop="2617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAACGATTCAAAAAAATAAAATTTTATAAATAAGAATAAATAAGTATTTAAGGGCGTAATTGTCCTTTCACGTTTTAAATGAATAAATAAAT--A-AA-TAAAT-CA-AAAACAGATTTGTATTTATTTATTTTAAATGTTATTTGACTAATTCTTGAATTAGTTTCCTAATCCAAATAGTCCTCTCTCTCTCACGCTTCTTAACTCCCTCTCTCACGTTCTCCATCTTCCTCACATTATTTCTGCCAAAATATCAACAGTTTTCATGCTTGAAGAACTCACAAAAA-TTTTTAAGCAAAAGAAAAAATAATCAAAACGTCAAGGCTAAGAGAGGTTCGTCGAGAGAGGTATACTTTGAAGTGAATTGGGAGTGGTTTGGAGGAGTTTTCCGGACAGCAACATTAAAGTTTGAACATCGATTAAGGTATG-GGTTTCTTCTCTCTTGGTTCCTTTCCCA</genome_strand>
        <mrna_strand>TGTAACGATTCAAAAAAAAAGAATGATATAAATAAGAATAAATAGGTATTTAAGGGCATAATTGTCCTTTCACGTTTTAAATGAATAAATAAATAAATAAGTAAATAAATAAAATAGATTTGTATTTATTTATTTTAAATGTTATTTGACTAATTCTTGAATTAGTCTCCTAATCCAAATAGTCCTCTCTCTCTCACGCTTCTTAACTCCCTCTCTCACGTCCTCCATCTTCCTCACATTATTTCTGACAAAACATCAACAGTTTTCATGCTTGAAGAACTAACAAAAATTTTTTAAGCAAAAGAAAAAGTAATCAAAACGTCAAGGCTAAGAGAGGTTTGTCGAGAGAGGTGTACGTTGAAGTGAATTGGGAGTGCTTTGGAGGAGTTTTCCGGGTAACAACATTAAAGTTTGAACATCGATTAAGGTATGAGTTTTCTTCTCTCTCGGTCCCTTTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ebPY5O/lycopersicum_combined_unigene_seqs" ref_id="SGN-U327066" ref_strand="+" ref_description="SGN-U327066        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT4G16660.1 | Symbol: None | heat shock protein 70, putative / HSP70, putative | chr4:9376773-9381529 FORWARD | Aliases: DL4355W, FCAALL.64 (evalue: 1e-83, score=306) genbank/nr: gi|15293149|gb|AAK93685.1| putative HSP protein [Arabidopsis thaliana](evalue: 8e-82, score=306)">
      <seq>caatttttgaattttcaccggagatctttgtccgattaactccgattttccgatgccggcgaagaatatgttgttccatatagggataattctatccctgtttttgctaaatccgattccatctcaatctgcagtttctagcatagatctgggatcagaatggttcaaagtcgccgtggttaacctaaaacccggacaacctccaatctctatagcgattaacgaaatgtccaaaaggaaaactccctcactcgtcgcatttcattccgagagtcgcctcatcggtgaagaagcttctggaatcgtcgctcgctatccaaacaaggtctattctcatctccgtgatctaatatcaaaaccctttccccacgtttccaaaaccctagaatctctttacctgacttacgacatttctcccgaggaatcgcggaatgtggcggtttttaaaactgaaaatggtaattttacggcggaggagttggtagcgatgttgttcaagtatgctcttggattggcggaagcgcatactaggggaacaccggtgaaagatgctgtggtgactgtgcctccgtatatgggagtagcggaaaggaaagggctgcttgttgctgcggaattggctggtattaatgtgttggcgcttgtgaatgaacattctggtgcagcgttgcagtatgggattgataaagatttttcgaatggttcaaggcatgtgattttctatgatatgggtgcgggtagtacatatgctgccttggtgtatttctctgcttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0165I16-8Bh7R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0165I16.1" temp_strand="+" temp_description="C07HBa0165I16.1  AC217497.1 htgs_phase:2 submitted_to_sgn_as:gi|167832399|gb|AC217497.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0165I16, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="18556" stop="19931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18856" g_stop="19631" g_length="776"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="776" r_length="776" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0165I16.1" gen_strand="+" ref_id="SGN-U327066" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0165I16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18856" e_stop="19631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTTTGAATTTTCACCGGAGATCTTTGTCCGATTAACTCCGATTTTCCGATGCCGGCGAAGAATATGTTGTTCCATATAGGGATAATTCTATCCCTGTTTTTGCTAAATCCGATTCCATCTCAATCTGCAGTTTCTAGCATAGATCTGGGATCAGAATGGTTCAAAGTCGCCGTGGTTAACCTAAAACCCGGACAACCTCCAATCTCTATAGCGATTAACGAAATGTCCAAAAGGAAAACTCCCTCACTCGTCGCATTTCATTCCGAGAGTCGCCTCATCGGTGAAGAAGCTTCTGGAATCGTCGCTCGCTATCCAAACAAGGTCTATTCTCATCTCCGTGATCTAATATCAAAACCCTTTCCCCACGTTTCCAAAACCCTAGGATCTCTTTACCTGACTTACGACATTTCTCCCGAGGAATCGCGGAATGTGGCGGTTTTTAAAACTGAAAATGGTAATTTTACGGCGGAGGAGTTGGTAGCGATGTTGTTCAAGTATGCTCTTGGATTGGCGGAAGCGCATACTAGGGGAACACCGGTGAAAGATGCTGTGGTGACTGTGCCTCCGTATATGGGAGTAGCGGAAAGGAAAGGGCTGCTTGTTGCTGCGGAATTGGCTGGTATTAATGTGTTGGCGCTTGTGAATGAACATTCTGGTGCAGCGTTGCAGTATGGGATTGATAAAGATTTTTCGAATGGTTCAAGGCATGTGATTTTCTATGATATGGGTGCGGGTAGTACATATGCTGCCTTGGTGTATTTCTCTGCTTATA</genome_strand>
        <mrna_strand>CAATTTTTGAATTTTCACCGGAGATCTTTGTCCGATTAACTCCGATTTTCCGATGCCGGCGAAGAATATGTTGTTCCATATAGGGATAATTCTATCCCTGTTTTTGCTAAATCCGATTCCATCTCAATCTGCAGTTTCTAGCATAGATCTGGGATCAGAATGGTTCAAAGTCGCCGTGGTTAACCTAAAACCCGGACAACCTCCAATCTCTATAGCGATTAACGAAATGTCCAAAAGGAAAACTCCCTCACTCGTCGCATTTCATTCCGAGAGTCGCCTCATCGGTGAAGAAGCTTCTGGAATCGTCGCTCGCTATCCAAACAAGGTCTATTCTCATCTCCGTGATCTAATATCAAAACCCTTTCCCCACGTTTCCAAAACCCTAGAATCTCTTTACCTGACTTACGACATTTCTCCCGAGGAATCGCGGAATGTGGCGGTTTTTAAAACTGAAAATGGTAATTTTACGGCGGAGGAGTTGGTAGCGATGTTGTTCAAGTATGCTCTTGGATTGGCGGAAGCGCATACTAGGGGAACACCGGTGAAAGATGCTGTGGTGACTGTGCCTCCGTATATGGGAGTAGCGGAAAGGAAAGGGCTGCTTGTTGCTGCGGAATTGGCTGGTATTAATGTGTTGGCGCTTGTGAATGAACATTCTGGTGCAGCGTTGCAGTATGGGATTGATAAAGATTTTTCGAATGGTTCAAGGCATGTGATTTTCTATGATATGGGTGCGGGTAGTACATATGCTGCCTTGGTGTATTTCTCTGCTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ebPY5O/lycopersicum_combined_unigene_seqs" ref_id="SGN-U318333" ref_strand="+" ref_description="SGN-U318333        Tomato 200607 #1 [17 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to NAD-dependent epimerase/dehydratase family protein [Arabidopsis thaliana] (TAIR:At5g44480.1); similar to NAD-dependent epimerase/dehydratase family protein [Arabidopsis thaliana] (TAIR:At4g20460.1); similar to UDP-galactose 4-epimerase-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC24804.1); similar to putative UDP-glucose 4-epimerase [Oryza sativa (japonica cultivar-group)] (GB:XP_479925.1); similar to putative UDP-glucose 4-epimerase [Oryza sativa (japonica cultivar-group)] (GB:XP_476598.1); similar to OSJNBa0093O08.14 [Oryza sativa (japonica cultivar-group)] (GB:XP_473906.1); similar to PREDICTED P0582D05.120 gene product [Oryza sativa (japonica cultivar-group)] (GB:XP_507116.1); contains InterPro domain NAD-dependent epimerase/dehydratase (InterPro:IPR001509); contains InterPro domain UDP-glucose 4-epimerase (InterPro:IPR005886) | chr1:10854587-10858196 FORWARD | Aliases: None(evalue: 5e-174, score=607) genbank/nr: MUR4(evalue: 4e-172, score=607)">
      <seq>aatttctttcctttgcttttataacattaataagaaaaattaattaattacacataacataacattgcagcagttttggcttaaggacaaattctcttccttttcctctttgctttcaggtcggttttgcgcagatagatcattgccaggggaggttggtgccccttgagaaatggattttgtggagttgaagagacggagcagcacttctaggagactgctcttgcttgctggcattgctgcgatttgtttatttatattcagaaattcatcgagttttagtacctctgtcaagttctctcaacacgaaccaggtgtaactcatgtgttagtgacgggaggtgctggcttcattggttctcatgcgtcccttcgtctcctaaaggattcgtatcgtgtaactatagtggacaatctttcccgtggaaatatgggctcggtaaaagttctccaggaacttttcccagaaccagggcgacttcagtttatttatgctgatttgggagatgctgctgctgttaacaaaatcttttcacaaaatgcatttgatgctgtgatgcattttgcagctgttgcatatgttggtgaaagtactcaagaaccgcttaggtattatcataacataacatcaaatactctgcttctagttaaggcaatggcagcacacggtgtaaaaacactaatctattcaagtacttgtgcaacatatggagagcctgagaaaatgcctattacggaagtgactccacaatccccaataaatccatatggaaaagcaaagaaaatggctgaagatatcatattggacttctcaaagacttcagatatggctgtcatgattttaaggtacttcaatgtgattggctcggatcctgaaggaaggttaggagaagctccgcccccagaattacgtgagcaaggtcggatatctggtgcttgttttgatgcagccaggggcataattccaggattgaaaataagaggagtagattacaccacacctgatggcacttgtgtaagagactacattgatgtgactgacctgattgacgctcatgttaaagctctcgagcatgctaaaccaagcaaagttggcatctacaatgtcgggactggaaaaggtagttcagtgaaacaatttgtggaagcttgtaaaaaggcaacaggagttgacataaagattgattaccttagtagacgtccaggagactacgctgaagtctacagtgatccttctaaaattagacgtgaactgaactggatcgcgagatattcactggaggagagtttagcaatagcatggagatggcaaaaggtacacagaaatggttacaactaaaataagtgcagttttgctaaccaggttctacaaagaaccttaacgcgtagtcgaggaaaacaggactggtttcttgccaattctcacaactccttgtcaatatcagatatcaaaatctcattttgttatttatagcttttacagtttgttagatgtataccaccaacaaataattttagtcaggctttacatattcttgttcattagtaggcattttaattcccaagtgtattacagtattggataacaaagtgacaacaaaattgttgctggggaaatgaatatattttttgttttgtttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0165I16-8Bh7R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0165I16.1" temp_strand="-" temp_description="C07HBa0165I16.1  AC217497.1 htgs_phase:2 submitted_to_sgn_as:gi|167832399|gb|AC217497.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0165I16, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="32457" stop="27676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32157" g_stop="32039" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32038" i_stop="31095" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31094" g_stop="31044" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="170" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31043" i_stop="30684" i_length="360">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30683" g_stop="30559" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="295" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30558" i_stop="30424" i_length="135">
            <donor d_prob="0.221" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30423" g_stop="30310" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="409" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30309" i_stop="30224" i_length="86">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30223" g_stop="30116" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="517" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30115" i_stop="29996" i_length="120">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29995" g_stop="29904" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="609" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29903" i_stop="29625" i_length="279">
            <donor d_prob="0.519" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29624" g_stop="29483" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="751" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29482" i_stop="29339" i_length="144">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29338" g_stop="29244" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="846" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="29243" i_stop="28990" i_length="254">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="28989" g_stop="28860" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="847" r_stop="976" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="28859" i_stop="28750" i_length="110">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="28749" g_stop="28605" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="977" r_stop="1121" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="28604" i_stop="28500" i_length="105">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="28499" g_stop="27977" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1122" r_stop="1644" r_length="523" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1645" polyA_stop="1684"/>
      <MATCH_line gen_id="C07HBa0165I16.1" gen_strand="-" ref_id="SGN-U318333" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1644</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0165I16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32157" e_stop="32039"/>
          <exon e_start="31094" e_stop="31044"/>
          <exon e_start="30683" e_stop="30559"/>
          <exon e_start="30423" e_stop="30310"/>
          <exon e_start="30223" e_stop="30116"/>
          <exon e_start="29995" e_stop="29904"/>
          <exon e_start="29624" e_stop="29483"/>
          <exon e_start="29338" e_stop="29244"/>
          <exon e_start="28989" e_stop="28860"/>
          <exon e_start="28749" e_stop="28605"/>
          <exon e_start="28499" e_stop="27977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCTTTCCTTTGCTTTTATAACATTAATAAGAAAAATTAATTAATTACACATAACATAACATTGCAGCAGTTTTGGCTTAAGGACAAATTCTCTTCCTTTTCCTCTTTGCTTTCAGGTAAATTACCTTAATTTTGTTTTTGTTTTTTTTTGTTGATTATCTTGATTAGATTTTGCATGTGATTTTTACATGGTTACAAATTTTTGGTGATGAATTTTTTTTTTTAATATAACTTGTTTGGTGAATTCTTGGTTCTTATTGCAAAAGTTTTTTTTTTTTTTTGTTTCTGGATTTTATTTAATTTAATCTGTTGGTAAAAGCTTTGTTTCTTTGTTATGGAAATATGTGCATTGTTTTGTGTTGTTTAAATCAATTTCTGATTAATCAAAAAGATTGTATTGTATTTTATTTTATGTTCATGTTCTGCATCATGATCTTTTCCAGAGTGCAAACTCTTTGTATTTTTAGATAATATATGAGAGTTTTTTAGGTTGGAGTTAGGTGCTTTTATGAAGTGGTGTGCTTGCATTGAATATTTGGATTATATATCTCTGTTGAGTCAGGGTCTTTCGAAAACAATCTCTCTACCTCCATGTGGTGGTCGAGGGTCTTTCGGAAACAACATCTCTACCTCCACGTGGTGGTCGAGGGTCTTTTGGAAACAATCTCTCTACCTCCACGAGGTGGTGATAAGGTCTAAGTACAGTTTATCTTTTTCAGACCCCACTTAGTGAGATTTTATTGGATATGATATTGTTGTCAGATTAGATATCTCCCTTTTTGGAAAAGGAAAACAAATACTAGCTTTAATTGTATCATAGTGATCCTAATTTGGCAATATAAGTATGTTGACTTTCTGTGGCGGAGTAAGGATTTTCAATTAGTGGTGTCAGATTATAGAAAAGAAAAGCTAAGGGGATTCATTGTCTACTTTATATACGTAAATTATAACTTTGATTGGTGTAATTTTCTAGAGAAGAGGGTTCGGATGAACCGCCTTGCCCCTCTTAGCTCATCACCTATTGACTTTTCCTTTCGTGCATCTTTCTTTCTATTCATAGGTCGGTTTTGCGCAGATAGATCATTGCCAGGGGAGGTTGGTGCCCCTTGAGGTATGTCCTTCCGGTGCAACTGAATGTATTTATGTAAATCCTGTTCATGAGGTTGATGATCTTTTTTTAGTAGTTAGGATTATATATATGGGATGTTTTGATGGATGGAATTCGGTGGCGTTCAATTTATTATGGATTCTCAGGAAGGAATTTATTTGATGTTTGGACTCAAAAAATTTAGCATCAGATCCGGTAGCTGCATGATAATGCTGTTATAAGAGTCTTAATTAAGTTTCGATCAGCTAGAATTTCTGAGGATCTTTGAATTGTCACGCGGTGAAATGCTGAAGAACTTAAAATGTACATCAGAGAAATGAATTGAAACATCATTAACTAAATATATTTGCATTTAATTTTCAGAAATGGATTTTGTGGAGTTGAAGAGACGGAGCAGCACTTCTAGGAGACTGCTCTTGCTTGCTGGCATTGCTGCGATTTGTTTATTTATATTCAGAAATTCATCGAGTTTTAGTACCTCTGTCAAGGTGATTGTCCAACTGATAATTAGATCATGTCTTAAAGTGTAAACTTCAGTATAGACAACTATTTTATAGTTCAAACTTACAATATGTGTTTTAAGAATCTGTCGGTAATAGGCAATCTAAATTTGTTATTTTCAGTTCTCTCAACACGAACCAGGTGTAACTCATGTGTTAGTGACGGGAGGTGCTGGCTTCATTGGTTCTCATGCGTCCCTTCGTCTCCTAAAGGATTCGTATCGTGTAACTATAGTGGTATGCCCCCCTTTTCATTTAAAACTCCATTCAGGAAAATCATGTTTTGGACGTTTATTTTAACCATTGTTTTTTTTTCCTGATAGGACAATCTTTCCCGTGGAAATATGGGCTCGGTAAAAGTTCTCCAGGAACTTTTCCCAGAACCAGGGCGACTTCAGTTTATTTATGCTGATTTGGGAGATGCTGCTGCTGTATCCTAGATAATTTCTTTTCTTCTTTCGTGTTTTAGCTTCACGGCCTATCTCCATTTTTAGTCTCTCTGTAGCGTTTTTCATATTGCTTCAATTTTTGATCCTTAACCAACACCTCAGGTTAACAAAATCTTTTCACAAAATGCATTTGATGCTGTGATGCATTTTGCAGCTGTTGCATATGTTGGTGAAAGTACTCAAGAACCGCTTAGGTACTTCTCGAATTATGAACCTCAAACTCTGTTGATTGGTCATTCAGTTCGATGCATCTTCTAGCTACCTGAGAATGATAACTTTATGATTTAAAACAAAATTGTTGATCCTAGCTTACAACTAAATGCACAAGTCATAACAAAACTTATTTCCCCAAATTATTCCTTGTTTTCGAGCTCTTCTTATATTTACGTATTCCTATGTAAGAGACTGAAATTTTTTATCCCCTTTGTTTCCGCCTTTTGTCTGTCTTGTAATACTCTTTGAATACTTTGCAGGTATTATCATAACATAACATCAAATACTCTGCTTCTAGTTAAGGCAATGGCAGCACACGGTGTAAAAACACTAATCTATTCAAGTACTTGTGCAACATATGGAGAGCCTGAGAAAATGCCTATTACGGAAGTGACTCCACAAGTCAGTAATATTGATGTTTCATTGGCAGTCTACGTCGTAGTGGAACAAGAGTTTGTTCCATTAGACATTTCTACATCTACCGATATTTGGAATTTTGTTTATTTTAGTTAACTGATTCTACTGTTTAACTGTGAATACAAACAGTCCCCAATAAATCCATATGGAAAAGCAAAGAAAATGGCTGAAGATATCATATTGGACTTCTCAAAGACTTCAGATATGGCTGTCATGATTTTAAGGTTTGTGATTTAACTCGTTATCTTATAAAGGGACAAACAGCTGATCCTTAGCAATGAAGTGCCTTGCGGTGATTGAATTAAACGCATTATCACTATAGGAATGGTTTTGGTTCGCCAAATTGAGCAATGTTCGAGCACCATTCATAATAATGCTGAAATAATTCATGCGATAATAGTATTTCTCCTAGGTCTACTTCATCTCTTTGTACATGTACATTTCTCAATAGTAGTATCTGATGTTCTACCATAATCAGGTACTTCAATGTGATTGGCTCGGATCCTGAAGGAAGGTTAGGAGAAGCTCCGCCCCCAGAATTACGTGAGCAAGGTCGGATATCTGGTGCTTGTTTTGATGCAGCCAGGGGCATAATTCCAGGATTGAAAGTAAGCTTCAATAATTGAATTGCTGGATGTTGCATTTCAAAAACAGGCAGCTTGTTTATGTCAAAACGGAACGTAAAACTAAAATCTTTACTCTTATATGGTGACTGCAGATAAGAGGAGTAGATTACACCACACCTGATGGCACTTGTGTAAGAGACTACATTGATGTGACTGACCTGATTGACGCTCATGTTAAAGCTCTCGAGCATGCTAAACCAAGCAAAGTTGGCATCTACAATGTCGGGACTGGAAAAGGTGCATGGTTACTTTCTACTACTCATAAACTATGTTTTGTTGTATAGCTCTACGAGAGAAGTGATTTTGATGATCGAGTACTCATCATTATTCAATATATTACAGGTAGTTCAGTGAAACAATTTGTGGAAGCTTGTAAAAAGGCAACAGGAGTTGACATAAAGATTGATTACCTTAGTAGACGTCCAGGAGACTACGCTGAAGTCTACAGTGATCCTTCTAAAATTAGACGTGAACTGAACTGGATCGCGAGATATTCACTGGAGGAGAGTTTAGCAATAGCATGGAGATGGCAAAAGGTACACAGAAATGGTTACAACTAAAATAAGTGCAGTTTTGCTAACCAGGTTCTACAAAGAACCTTAACGCGTAGTCGAGGAAAACAGGACTGGTTTCTTGCCAATTCTCACAACTCCTTGTCAATATCAGATATCAAAATCTCATTTTGTTATTTATAGCTTTTACAGTTTGTTAGATGTATACCACCAACAAATAATTTTAGTCAGGCTTTACATATTCTTGTTCATTAGTAGGCATTTTAATTCCCAAGTGTATTACAGTATTGGATAACAAAGTGACAACAAAATTGTTGCTGGGGAAATGAATATATTTTTTGTTTTGTTTTTAA</genome_strand>
        <mrna_strand>AATTTCTTTCCTTTGCTTTTATAACATTAATAAGAAAAATTAATTAATTACACATAACATAACATTGCAGCAGTTTTGGCTTAAGGACAAATTCTCTTCCTTTTCCTCTTTGCTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGTTTTGCGCAGATAGATCATTGCCAGGGGAGGTTGGTGCCCCTTGAG........................................................................................................................................................................................................................................................................................................................................................................AAATGGATTTTGTGGAGTTGAAGAGACGGAGCAGCACTTCTAGGAGACTGCTCTTGCTTGCTGGCATTGCTGCGATTTGTTTATTTATATTCAGAAATTCATCGAGTTTTAGTACCTCTGTCAAG.......................................................................................................................................TTCTCTCAACACGAACCAGGTGTAACTCATGTGTTAGTGACGGGAGGTGCTGGCTTCATTGGTTCTCATGCGTCCCTTCGTCTCCTAAAGGATTCGTATCGTGTAACTATAGTG......................................................................................GACAATCTTTCCCGTGGAAATATGGGCTCGGTAAAAGTTCTCCAGGAACTTTTCCCAGAACCAGGGCGACTTCAGTTTATTTATGCTGATTTGGGAGATGCTGCTGCT........................................................................................................................GTTAACAAAATCTTTTCACAAAATGCATTTGATGCTGTGATGCATTTTGCAGCTGTTGCATATGTTGGTGAAAGTACTCAAGAACCGCTTAG.......................................................................................................................................................................................................................................................................................GTATTATCATAACATAACATCAAATACTCTGCTTCTAGTTAAGGCAATGGCAGCACACGGTGTAAAAACACTAATCTATTCAAGTACTTGTGCAACATATGGAGAGCCTGAGAAAATGCCTATTACGGAAGTGACTCCACAA................................................................................................................................................TCCCCAATAAATCCATATGGAAAAGCAAAGAAAATGGCTGAAGATATCATATTGGACTTCTCAAAGACTTCAGATATGGCTGTCATGATTTTAAG..............................................................................................................................................................................................................................................................GTACTTCAATGTGATTGGCTCGGATCCTGAAGGAAGGTTAGGAGAAGCTCCGCCCCCAGAATTACGTGAGCAAGGTCGGATATCTGGTGCTTGTTTTGATGCAGCCAGGGGCATAATTCCAGGATTGAAA..............................................................................................................ATAAGAGGAGTAGATTACACCACACCTGATGGCACTTGTGTAAGAGACTACATTGATGTGACTGACCTGATTGACGCTCATGTTAAAGCTCTCGAGCATGCTAAACCAAGCAAAGTTGGCATCTACAATGTCGGGACTGGAAAAG.........................................................................................................GTAGTTCAGTGAAACAATTTGTGGAAGCTTGTAAAAAGGCAACAGGAGTTGACATAAAGATTGATTACCTTAGTAGACGTCCAGGAGACTACGCTGAAGTCTACAGTGATCCTTCTAAAATTAGACGTGAACTGAACTGGATCGCGAGATATTCACTGGAGGAGAGTTTAGCAATAGCATGGAGATGGCAAAAGGTACACAGAAATGGTTACAACTAAAATAAGTGCAGTTTTGCTAACCAGGTTCTACAAAGAACCTTAACGCGTAGTCGAGGAAAACAGGACTGGTTTCTTGCCAATTCTCACAACTCCTTGTCAATATCAGATATCAAAATCTCATTTTGTTATTTATAGCTTTTACAGTTTGTTAGATGTATACCACCAACAAATAATTTTAGTCAGGCTTTACATATTCTTGTTCATTAGTAGGCATTTTAATTCCCAAGTGTATTACAGTATTGGATAACAAAGTGACAACAAAATTGTTGCTGGGGAAATGAATATATTTTTTGTTTTGTTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ebPY5O/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0165I16-8Bh7R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0165I16.1" temp_strand="+" temp_description="C07HBa0165I16.1  AC217497.1 htgs_phase:2 submitted_to_sgn_as:gi|167832399|gb|AC217497.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0165I16, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="36377" stop="37530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36677" g_stop="37230" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0165I16.1" gen_strand="+" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0165I16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36677" e_stop="37230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCATCATCTGAGGAAGTAGTAAGAGAAGGGGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTTTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCTGAGGTATAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCACTGGAAATAGGCACATTTCCTCGTCTGACTACAGGGCCTATAATGACAAATGACCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGTGCTGAATCTGAGGATGCCTACAATTTTCTGGTTGACTGTCATGAGCTATTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTTACATGTTGAGTGTCAACCAACAAAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ebPY5O/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0165I16-8Bh7R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0165I16.1" temp_strand="-" temp_description="C07HBa0165I16.1  AC217497.1 htgs_phase:2 submitted_to_sgn_as:gi|167832399|gb|AC217497.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0165I16, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38627" stop="37697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38327" g_stop="37997" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0165I16.1" gen_strand="-" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0165I16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38327" e_stop="37997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACATCACAATTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATATCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGAAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAATATTACAGAAGCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ebPY5O/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335073" ref_strand="+" ref_description="SGN-U335073        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0165I16-8Bh7R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0165I16.1" temp_strand="+" temp_description="C07HBa0165I16.1  AC217497.1 htgs_phase:2 submitted_to_sgn_as:gi|167832399|gb|AC217497.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0165I16, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="48762" stop="49653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49062" g_stop="49353" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0165I16.1" gen_strand="+" ref_id="SGN-U335073" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0165I16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49062" e_stop="49353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAATGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGAAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACAACAACACCAGCACCGGCGAGACAAGGTGCGTCTGAGCCAGCCACTGGGGCTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAAC-AC--CA--A-CACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ebPY5O/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335932" ref_strand="+" ref_description="SGN-U335932        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|2190718|gb|AAB64397.1| beta-galactosidase [unidentified cloning vector](evalue: 3e-14, score=80.1)">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0165I16-8Bh7R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0165I16.1" temp_strand="-" temp_description="C07HBa0165I16.1  AC217497.1 htgs_phase:2 submitted_to_sgn_as:gi|167832399|gb|AC217497.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0165I16, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="50092" stop="49060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49792" g_stop="49360" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0165I16.1" gen_strand="-" ref_id="SGN-U335932" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0165I16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49792" e_stop="49360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCGGTCGGTGGGGGAGTCACTTCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGTCTCTTGCCGCTGCTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ebPY5O/lycopersicum_combined_unigene_seqs" ref_id="SGN-U317064" ref_strand="+" ref_description="SGN-U317064        Tomato 200607 #1 [6 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 5e-64, score=248)">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccgggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagctgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgtcgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0165I16-8Bh7R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0165I16.1" temp_strand="-" temp_description="C07HBa0165I16.1  AC217497.1 htgs_phase:2 submitted_to_sgn_as:gi|167832399|gb|AC217497.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0165I16, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="51167" stop="49131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50867" g_stop="49431" g_length="1437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1437" r_length="1437" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0165I16.1" gen_strand="-" ref_id="SGN-U317064" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>1437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0165I16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50867" e_stop="49431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCGGATGCCTCCGCTTCAGACCGCACAGGGAAAGCGTAACAATGGGCCCTATCGTTCATCTGTCTGTTGCCCCTACCTTGTGGTGATGTAATGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCACCACGTCCTCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAAGTGTGTAACTTCCCGAACCCTGTCCTTTAGTGTAAGAACCATTAAACTCACCTCCTTTTCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGCGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCATTCCCTTGAAACTGATATGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCAT-CCTCCCCTTCTCTTATTACTTCCTCGGTCGGTGGGGGAGTCACTTCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCGGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ebPY5O/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335938" ref_strand="+" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>tgtagtctatgcacattcaaaaactgccgatctttacaacaaaaccggagcaccccaaggagatgcacttggtctaatgaagcctttgttcaataactcttgaagttgtgcctttaactctcttaactctgcgggagccattctataagggggtataaaaatggggcgtgtgcccggttcgagatcaatacagaagtcaatatccctatccggtggcataccaggatgatctgcagggaacacatccataaactcacgaactactgaaactgagtcaatcgaaggtacttgggtagtgttatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatacgcaccggattggaagtgtagtcaccctcctacactaacagatctgtcccaggcttggctaacgtcacggttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcgaagtcaaccatttcttgcaaggattttgccgtagccgctacctgtaacgctgaaatccgcaactctgacctcaaccctttcacaaaacgacgaatcctctcttgtggactgaaacaaagttgagtggcatatctggatagtgcacgaaacttagcctcatatgcattgacctacatcctaccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0165I16-8Bh7R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0165I16.1" temp_strand="-" temp_description="C07HBa0165I16.1  AC217497.1 htgs_phase:2 submitted_to_sgn_as:gi|167832399|gb|AC217497.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0165I16, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="51762" stop="37004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51498" g_stop="50966" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50965" i_stop="50222" i_length="744">
            <donor d_prob="0.984" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50221" g_stop="50054" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="694" r_length="168" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0165I16.1" gen_strand="-" ref_id="SGN-U335938" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0165I16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51498" e_stop="50966"/>
          <exon e_start="50221" e_stop="50054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCAGGAGCCATTTTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACCGAAACCGACTCAATCGAAGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACATCAAAATCATCCATTTCTAAGGTAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACTTATATACCTTTTCAACTACCACAGACTCACCCACCAGAGTAGAGACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCGGATGCCTCCGCTTCAGACCGCACAGGGAAAGCGTAACAATGGGCCCTATCGTTCATCTGTCTGTTGCCCCTACCTTGTGGTGATGTAATGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCACCACGTCCTCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAAGTGTGTAACTTCCCGAACCCTGTCCTTTAGTGTAAGAACCATTAAACTCACCTCCTTTTCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGC</genome_strand>
        <mrna_strand>TGTAGTCTATGCACATTCAAAAACT-GC--CGATC-T-T-TACAA-CAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAAAAATGGGGCGTGTGCCCGGTTCGAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGATGATCTGCAGGGAACACATCCATAAACTCACGAACTACTGAAACTGAGTCAATCGAAGGTACTTGGGTAGTGTTATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCTACACTAACAGATCTGTCCCAGGCTTGGCTAACGTCACGGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGATTTTGCCGTAGCCGCTACCTGTAACGCTGAAATCCGCAACTCTGACCTCAACCCTTTCACAAAACGACGAATCCTCTCTTGTGGACTGAAACAAAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCTACATCCTACCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ebPY5O/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335930" ref_strand="+" ref_description="SGN-U335930        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 7e-35, score=150)">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0165I16-8Bh7R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0165I16.1" temp_strand="-" temp_description="C07HBa0165I16.1  AC217497.1 htgs_phase:2 submitted_to_sgn_as:gi|167832399|gb|AC217497.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0165I16, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="51171" stop="50013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50871" g_stop="50313" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0165I16.1" gen_strand="-" ref_id="SGN-U335930" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0165I16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50871" e_stop="50313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCGGATGCCTCCGCTTCAGACCGCACAGGGAAAGCGTAACAATGGGCCCTATCGTTCATCTGTCTGTTGCCCCTACCTTGTGGTGATGTAATGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCACCACGTCCTCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAAGTGTGTAACTTCCCGAACCCTGTCCTTTAGTGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ebPY5O/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335939" ref_strand="+" ref_description="SGN-U335939        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-47, score=191)">
      <seq>gaacacatccaaaaattctcaaactaccaaaactaattcaattgagggtacttggatagtgtcatccttgagatgtgccaagaaggatagacaacccttactaaccatcttctgagcacaaagaaaggagataatacgcaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaattgggagaaagccaagtcatacccagaattacatcaaagtcacccatttctaaagtaaccaaatctagataagtgttgctccccacgaaattcaccaaacaagacctatgtaccttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagtaattcacaatgcaattttagaccattagcaaatgatgaagatacatatgaaaacgtggagccagggtcaaataatacagatgccatgcaatcacaaaccaagagattacctgtgataacagcatcagacgcctctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0165I16-8Bh7R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0165I16.1" temp_strand="-" temp_description="C07HBa0165I16.1  AC217497.1 htgs_phase:2 submitted_to_sgn_as:gi|167832399|gb|AC217497.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0165I16, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="51554" stop="50412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51254" g_stop="50712" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0165I16.1" gen_strand="-" ref_id="SGN-U335939" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0165I16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51254" e_stop="50712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACATCCAGAAACTCACGAACTACCGAAACCGACTCAATCGAAGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACATCAAAATCATCCATTTCTAAGGTAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACTTATATACCTTTTCAACTACCACAGACTCACCCACCAGAGTAGAGACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCGGATGCCTCCGC</genome_strand>
        <mrna_strand>GAACACATCCAAAAATTCTCAAACTACCAAAACTAATTCAATTGAGGGTACTTGGATAGTGTCATCCTTGAGATGTGCCAAGAAGGATAGACAACCCTTACTAACCATCTTCTGAGCACAAAGAAAGGAGATAATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTGGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCACCCATTTCTAAAGTAACCAAATCTAGATAAGTGTTGCTCCCCACGAAATTCACCAAACAAGACCTATGTACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGCAATTTTAGACCATTAGCAAATGATGAAGATACATATGAAAACGTGGAGCCAGGGTCAAATAATACAGATGCCATGCAATCACAAACCAAGAGATTACCTGTGATAACAGCATCAGACGCCTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ebPY5O/lycopersicum_combined_unigene_seqs" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0165I16-8Bh7R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0165I16.1" temp_strand="-" temp_description="C07HBa0165I16.1  AC217497.1 htgs_phase:2 submitted_to_sgn_as:gi|167832399|gb|AC217497.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0165I16, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="51781" stop="50424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51481" g_stop="50724" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0165I16.1" gen_strand="-" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0165I16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51481" e_stop="50724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCAGGAGCCATTTTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACCGAAACCGACTCAATCGAAGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACATCAAAATCATCCATTTCTAAGGTAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACTTATATACCTTTTCAACTACCACAGACTCACCCACCAGAGTAGAGACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATC</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ebPY5O/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335935" ref_strand="+" ref_description="SGN-U335935        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-78, score=295)">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0165I16-8Bh7R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0165I16.1" temp_strand="-" temp_description="C07HBa0165I16.1  AC217497.1 htgs_phase:2 submitted_to_sgn_as:gi|167832399|gb|AC217497.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0165I16, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="51850" stop="50592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51550" g_stop="50892" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0165I16.1" gen_strand="-" ref_id="SGN-U335935" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0165I16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51550" e_stop="50892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCAGGAGCCATTTTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACCGAAACCGACTCAATCGAAGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACATCAAAATCATCCATTTCTAAGGTAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACTTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ebPY5O/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0165I16-8Bh7R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0165I16.1" temp_strand="-" temp_description="C07HBa0165I16.1  AC217497.1 htgs_phase:2 submitted_to_sgn_as:gi|167832399|gb|AC217497.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0165I16, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="52370" stop="51058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52070" g_stop="51358" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0165I16.1" gen_strand="-" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0165I16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52070" e_stop="51358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACGAATCAGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGTCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTTAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATTACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAATCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACAGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTC-TTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCAG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ebPY5O/lycopersicum_combined_unigene_seqs" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0165I16-8Bh7R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0165I16.1" temp_strand="-" temp_description="C07HBa0165I16.1  AC217497.1 htgs_phase:2 submitted_to_sgn_as:gi|167832399|gb|AC217497.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0165I16, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="53851" stop="53074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53551" g_stop="53375" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0165I16.1" gen_strand="-" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0165I16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53551" e_stop="53375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATATAATGCTTAAAATGGGGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCATTGACCACCAAATTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTCCTTTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ebPY5O/lycopersicum_combined_unigene_seqs" ref_id="SGN-U339540" ref_strand="+" ref_description="SGN-U339540        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-58, score=228)">
      <seq>agattcgatggagaaagtgaagtctattcaagaaaagcttctagcggcgcaaagtagacaaaaagaatatgcagatcgaaaggttagagacttagagttcatggagggcgaacaagtcttgttgaaagtctcgccaatgaaaggggtgatgcggtttcgtaaaagaggtaagttaagtccaaggtatattggaccatttgaggtactaaagcgagtaggggaggtggcttatgaattagccttacctccagggctgtccggagtacatccggtatttcatgtatccatgttgaaaagataccatggagatggaaactacatcatccgttgggattcagtttcgcttggtgagaattggacttatgaggaggaaccagttgctattttagatagagaggttcgcaagttgaggtcgagagaaattgcatccatcaaagttcaatggaagaatcgaccggttgaagaagctacttgggagaaggaggcagatatgcaagaaaaatacccacatctgtttacagattcaggtactccttttcgccattgtttttcttcatttgatcgttcggggacgaacgatgggtaaattggtatctattgtaacgacctgtttagtcgttttgagcagcagattttaattctggaaaaactggccaagaccacgggcactgcgacggaccgtcacaggcacgacggcccgtcgaaggtgcatcgtttcagcatacttagaatttctgaatttggatatgaaaatcgactctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0165I16-8Bh7R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0165I16.1" temp_strand="+" temp_description="C07HBa0165I16.1  AC217497.1 htgs_phase:2 submitted_to_sgn_as:gi|167832399|gb|AC217497.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0165I16, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="53313" stop="54674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53612" g_stop="54374" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0165I16.1" gen_strand="+" ref_id="SGN-U339540" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0165I16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53612" e_stop="54374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTCGATGGAAAAAGTGAGGTCTATTCAAGAAAAGCTTCTAGCGGCGCAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAAGGTGAACAAGTCTTGTTGAAAGTTTCACCAATGAAAGGGGTGATGCGGTTTGGAAAAAGGGGTAAACTAAGTCCAAGGTACATTGGACCATTTGAAGTACTTAAGCGAGTAGGAGAGGTGGCTTATGAGTTAGCCTTGCCTCCAGGGCTGTCCGGAGTGCATCCGGTATTCCATGTGTCGATGTTGAAAAGATACCATGGGGATGGAAACTACATTATCCGTTGGGATTCAGTTTTGCTTGATGAGAACTTGTCTTATGAGGAGGAGCCTGTTGCTATTTTAGATAGAGAAGTTCGCAAGTTGAGGTCAAGAGAGATTGCATCCATCAAGGTGCAATGGAAGAATCGACCCGTTGAAGAAGCCACTTGGGAGAAGGAGGCGGATATGCGAGAAAAATACCCACATCTGTTTACAGATTCAGGTACTCCTTTTCGCCCTTGTTTTCCTTCTTTTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTGAGCAGCAGACTTCAATTCTGGAAAAACTGGCAGAAGCGACGGTCCCCACGACGGACCGTCAAGGGCACGACGGACTGTCGCAGG-GTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCT</genome_strand>
        <mrna_strand>AGATTCGATGGAGAAAGTGAAGTCTATTCAAGAAAAGCTTCTAGCGGCGCAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAGGGCGAACAAGTCTTGTTGAAAGTCTCGCCAATGAAAGGGGTGATGCGGTTTCGTAAAAGAGGTAAGTTAAGTCCAAGGTATATTGGACCATTTGAGGTACTAAAGCGAGTAGGGGAGGTGGCTTATGAATTAGCCTTACCTCCAGGGCTGTCCGGAGTACATCCGGTATTTCATGTATCCATGTTGAAAAGATACCATGGAGATGGAAACTACATCATCCGTTGGGATTCAGTTTCGCTTGGTGAGAATTGGACTTATGAGGAGGAACCAGTTGCTATTTTAGATAGAGAGGTTCGCAAGTTGAGGTCGAGAGAAATTGCATCCATCAAAGTTCAATGGAAGAATCGACCGGTTGAAGAAGCTACTTGGGAGAAGGAGGCAGATATGCAAGAAAAATACCCACATCTGTTTACAGATTCAGGTACTCCTTTTCGCCATTGTTTTTCTTCATTTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTGAGCAGCAGATTTTAATTCTGGAAAAACTGGCCAAGACCACGGGCACTGCGACGGACCGTCACAGGCACGACGGCCCGTCGAAGGTGCATCGTTTCAGCATACTTAGAATTTCTGAATTTGGATA-TGAAAATCGACTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ebPY5O/lycopersicum_combined_unigene_seqs" ref_id="SGN-U346023" ref_strand="+" ref_description="SGN-U346023        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>aaaacacttagaaaatctgaaattgggtactgaaaatcgactctctgaacttcgtgacggaatgacaggacggaccatcacaggcgtgacggaccgtcatagattgttcagtggaaattgactctctgacccttgcgacgacctgcaggacggaccgtcacagtcacgacggcccgtcacaggttgcgcaaatcccaggcagaatcggatttccttacacgttttaagggacgtttttggactattctttccttaattatagatttcgtgggtttatattaataactcaaattcttggggttaaaagaggtaaccctaagttaattagtggggtattattgccatcttttattcttaattatatgttaatttggggtaaaagaaagagggttttgaaacgagaccctgcgatggtccgtcgtgcccatgacggtccgtcgtggggtccgtcgcttctgccagtttttccagaaataaagtctgctgctcaaaacgactaaacgggtcgttacattatttgactctatcactttaattttctagttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0165I16-8Bh7R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0165I16.1" temp_strand="+" temp_description="C07HBa0165I16.1  AC217497.1 htgs_phase:2 submitted_to_sgn_as:gi|167832399|gb|AC217497.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0165I16, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="54029" stop="95800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54329" g_stop="54723" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54724" i_stop="55742" i_length="1019">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.891" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55743" g_stop="55752" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="404" r_length="10" r_score="0.700"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55753" i_stop="56069" i_length="317">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.757" a_score="0.58"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56070" g_stop="56112" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="444" r_length="40" r_score="0.581"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56113" i_stop="58021" i_length="1909">
            <donor d_prob="0.000" d_score="0.58"/>
            <acceptor a_prob="0.858" a_score="0.52"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58022" g_stop="58081" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="502" r_length="58" r_score="0.550"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58082" i_stop="60625" i_length="2544">
            <donor d_prob="0.900" d_score="0.60"/>
            <acceptor a_prob="0.000" a_score="0.57"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60626" g_stop="60671" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="548" r_length="46" r_score="0.565"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0165I16.1" gen_strand="+" ref_id="SGN-U346023" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0165I16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54329" e_stop="54723"/>
          <exon e_start="55743" e_stop="55752"/>
          <exon e_start="56070" e_stop="56112"/>
          <exon e_start="58022" e_stop="58081"/>
          <exon e_start="60626" e_stop="60671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTGACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCATAGATTGTTCAGTGGAAATTGACTCTCTGACTCTTGCGACGACCTGCAGGACGGACCGTCGCAAGCACGACGACCCGTCACAGGTTGCGCAAATCCCAGGCAGAATCGGATTTCCTTACACGTTTTAAGGGACGTTTTTGGACTATTCTTTCCTTAATTATAGATTTCGTGGGGTTATATTAATAACTAAAATTCTTGAGGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGTATTATTGCCATCTTTTATTCTTAATTATATACTAA-TTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAACAGAAAGAACAAGAGAGAGAGAGAGAGAATCGAACGAGAAGGGAGAAACAAAGCTTTGAGAAAATTCTTGCTTGATTCAACTCTTCGGTGGAGGTAGGTTATGGTTATTTCATGCTATTCGTAGTAAACTCTTAATAGTGAATGATATGTGTTAGTAGTATTGTAAACCCTTCTATATGCTTAATTGTATGCTTGCATGAATGATGTGATTATGTAATTATGAATAAATGAGCATGATGAAGCTATTGAATCCCAAATCATGAAAAAAAACCCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAATGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAATATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTTCGGTACCAGGATAGAATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAAAGAATCTTGAAAGATATTAATATACTCAATCTAATAAACTTAATTCCCAAACGAGTATGGTATTGAGGCTTGAGCCCTCATGGATGAACTTGATGGTACTTATTGATGATTATAGTACTTGTTGTTGCTACATGTTGAGTTTTATAGTTGATTTATGATATTACTTGATATATACTGTTCTCTATTTTGAGTTGACCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATTGTTTTCTTCTTATTTATTTGTGGAGTGTAGCAAACGTGCCGTCATCTTCGACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCATGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTCTTAGAAATTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTGGTTTTATTAATGAGTTTAAGTCTTCCGCATTATTTTCTGTTGTTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGT-GTGGGTGCCAGTCGCAACCCGGTTTGGGTCGTGACACGAATATGTGTGTGAGAGAAAGAAAGCAAGACAACGTATTCGATCAAATCAAGAAACAGTGAGAAAAAACTACTTATGAGTACTATAGCCAATAATCTAGACTTCAAGTTATACTCCTTTAGAGAGGAGTCTAGGAGGGCACAAAGTAAATAAAGGCCAAAAACTGTTTCTACAATCTAAGGATACATAAAAAATTTAATTCTTTCTCAATAATTGAAATACAAAAATTATTTTGACATTTTCAAATAAACATGATAAATAATAATAATAATAAAGTATCAGATGTTTTCGTCATTATTTTAACATCATGTCAAACATATATATTCAAATTAAATAGTTTATTTAATGATATTGTTTTTCTAATTGATTTGAAAATCATTCAAGAAAATAGATCAGAATTATGAGTCTCAATATATTAAAAATTTTCGTACCGATCCATCTGTAGATTAGTTTTGAGTACACTTATAAATTTGTTTTATAGGTGTTTAACAAATAAAAACAATGACCTACTTGATAAAAATTAGAATGAATTATCTTATTCTTTACAAAATGATAAAATGATTAAAAAAATTATGACTTTACATTTTGCCTTTATATTCATTAAAATTAGGAGACCAATTTAGTATAGCAAGGAAATAACTTTTTTTAAAACTAATTTATAAATCTGATGGATGAATGTTTTATCTCAAATAATGAGATTTAAAAATATTAACAAAAGTATATATCATATATATTGCAGTAATTTAACATAAGGTAGTTAAAATAATAAATAACTTGCCTAAAATGATTTTAGCTGATGATAAAATAATAGTAATAAATAGATATATGTTTATCAATTAATTAGATAATGACATATATGTTTTGGGGTTATACATAAAAAGAGAAATCTAATAAATTAGATACTTCAAAAAATAATTTTGCAAACCAAAAACAAAAGAAACACCATGAAATTCAAAAGTCTAAAGAGAACAAAAGGAAAGGCCATAACATGCTTTGAATTTTGTGAAAATTTTATTTTTGAAGAGCTTGCTCACTGGATGTTTTCCTTATGAATTAGGCCTTTTGAGAATTGCAATTGTGATTGATGTAGGATTTAACATGTTAACCGGTCCATTATCATATTCATGAGAATGTTTGAAAAATGTGAATCAATTGAATTTTGTTCATAATTTGTTATGTACAAGTCTAAAAAATGAGGCGTTCACGCTAAGAAATAGTGAATTTTACTTTTCTCTTTACAAAAGTAGTACTATCATGTAGGGAATTAATTAAAAATGAAGTTCTTAATGTTGAAAAAGAAACTACATTATTGATCTTCCTAATAAGAGATCTATTCCGTATTATTTAGAATGCAAATTACAAATATAAGGTGACAAATTTTATTGGTATATGACATGAGAGGGGAGAGAAATGAGGAGTAAATGAAATGAAGAATGTGTTAATGTCTATTTACTTGAGTCATGACAAACTAGAAAAATCTTATAATGTTGTAAAACTAAAACAAGAAATATTGAAGATGAAAAGAATAAAAATAGTGAGACAAGAAATGAGAGATTTTCTTATTATTCCAAGTCTTCAAGTGTCTAAAATAGGAACTCTTATGTCTCTATTTATAGTGTAACATAGAGTCATACAAAAAGTTAGTCATAAACATGACATTAAACATGAATATAACGAAGGAGGTTATGGAGGTGAAAGGTTACAAAAAAAATTATCATAAAGGTGGAGGTTATCTTCATAATGGAGGGAAGTAATGTAGTAACTTCTTGGTGTAGTGGATTATCTTCATAATAGAAGGAAGTAATGTAGTAACCTCTTGGTGAAGTGGTCATACACAATATATTATTTTATATAACACTCCTCCTTTGATGTCCATAGATAATATGCCTCGTTAAAGCCTTACTAGGAAAAAATTCTAGTGAAGAAAAAAGAGTACACATATCTTTTAATACGCTTTGAATGTTGACTCGTTAAAAACCTTACCAGGAAAAATCAACCGGGACAAAATCATTGTTAAGAAAAAGAGCACAACACATATTTTTCTCCCCCTGATAAAAACTTCACTTGATATCTCGAAAACAATGCATTTCAATCTGGTATCACAACTTTCCAAATATTGATGTTGGCAATCTTTGGTGAATAAGTTTACAAGATTATTACTTGAATGAGCCTTTGAACGTCTACGTCAACATTTAGTTGAAGATCATGTGTGAAATACTTTTGGTGAACTATACTTTGTCCGATCTCTTTTGATTGTGTCCTCCTTTCAATTGAGATATATATTATTATATTATATGGTGGCTGAAAAATCACATATTTTTTGAATATGATAGATCATGATTTCAACCAAACACACCCGAACTTACTTCATAGATTAGTATTATTTCTACATGATTAGAAGAAGTGGTTACCAATGTTTGTTGAATGTCAAAATATTGTTATGCCTCCATATGTAAGCAAATAGCTCATTTGCGATTGAGCTTTGTGTAGATCAAATAAATATTCTGCATCTACATAATCAGATCATTTCTGACTCATGAGAGATTGATCAATTTTATCGAAGCTCATTTTTCTTCTCAAAGAAAATCACACATCTTTTAGCATTTGCATAACCAACAATTTATAAGTGCATCAATTGCACTAATACATGACATTTTAAATCATTTTATAAGGTTGAAAAGATTCTTTCTTTGTGTTAAGCAATCTCAAAACCATTGGATACTCAATGGAATTGCTTAAAGACCTTTTAAATCCTTCAAGGATTTTCATATAACTTTCAATCGTCTAGTTAGACATAATAATAAATCGTTATGCATATTCAATTATTTCATCTATTGCCAGACTGAAACAAGTTTTATTGCATCCACCACTAGAGAATATATCTCCATTTAATAATGTCAGAATGTTTGCGAAAACTCTTTATGCCCCGAGGAACAAACCGTACTTTATATCTTACAGTTATAGTTTTGTACCCCACTGACATATATTTTGATCTATGAACTATAAGTTCAAAAAAATCACCATTCTAAGTGAAAAAAAAAGTCAGTCATCATTGGACCCACAAGATAGTGCCACGTAGGCCAAAAAGGGGTAGAAAATTATTGATAAAATAAGTTCAGGGGGGGTAATAGGACCTTAGTATAGTAAGTGTGTCTCTGAGATTTCGAACATAGGTTGAGGGGGTACTTGTGCATTATCTCTTTGTTTATCAATATTCTCTCGATAATAACCCAAACTGCAATAAAGTAATTTAATTTGAAATTCATGTATTGATATCAATTGTGGAAACATCTGTTTTTTTGAGTTGTGAAACATTCATAATCTAATATTTACTATACTCCTTACTCTTGACGAATGACACTAACTTATTATAATTCAAGATTCTAAGAAGTAGAAATCAAAACTAAAAAGTGCAACTCATGACTATCATATGAAGGTCGTTATGAGTTAATTTCCACTCATTAGAGATATATATGTCATATGTTAATTGTTGTAATGAAACATTATGAAAATTATAAGAGATACTTTATTTATAGTTGAAAATTATTTATGAAAAATGGAGAACAAATTATATATTTTAATATTTTTATGTCATATACATATTAGTTTAAAGAATTTTCACACTATAAATTTATCTACTTATATAAATATGTAATTTATTTTATTATGAAAAATTACAAATTTGATGTTTTATGAAAAATTGGTATGAATATTTTCATATGTCCTCATAGTAAGAAGTTCTTTATTTTATAATTAGAGAAATATTACTTAAAATAAGTTATCACGTCAATTAATCATACTAATTGTAATATATTAATATGATTTTTTTAGATAAACATCACGTAAATCAATTTTCAAGGTTTTAACAAATCATTAATTTAGAATTACCTTTAGACCTTAAAAATCATTAGTATGTTGTAAAAATAAAAATTTATCCTACATTTATTTAATAGATATTTTTTATTTGATGAAAATTTTACACCGTATAAAAAATAAATAGACAATATCTCATTAAAATAGACTAATTAAAATTAGTCTATATTAAGAAAAAAGTATGATTGAAAATGTGGATCCATATTAAATGTCACATCATTAGGATACATGTAACGACCCATTTAGTTGTTTTAAATATTAGAGCTTTTTATTTCATAATATACTATTTCAATATAATTTAAATAGGTATTTTGGACCATTCATAACTACAATTATAAAAATAATGGGATAGTTTTAATAATTTATTTAATTGACGTATATTTATGAAATAATTTATTTTAATACCCTAAATCTGACCTATATAGGAAAATAAGTGGTTAAGGAGTTTTGTCACTTCTAATACCTAATTATTTAAGAAAATGGAGAAAAAGCGAGAAACAGAAATTTATCGTGAACCAACGAATTTCAGTCTGCTCAGGTAAGCATAAGAATAATTCTTAATTTTAAATTTCTAATGTGCTAGGATAAGCGAAATTGGATTGAATAAGAGAATTGAGTTTTTATTTTACTCAATGACCTCTAGTTTTTCTTTATG</genome_strand>
        <mrna_strand>AAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTGACGGAATGACAGGACGGACCATCACAGGCGTGACGGACCGTCATAGATTGTTCAGTGGAAATTGACTCTCTGACCCTTGCGACGACCTGCAGGACGGACCGTCACAGTCACGACGGCCCGTCACAGGTTGCGCAAATCCCAGGCAGAATCGGATTTCCTTACACGTTTTAAGGGACGTTTTTGGACTATTCTTTCCTTAATTATAGATTTCGTGGGTTTATATTAATAACTCAAATTCTT--GGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGTATTATTGCCATCTTTTATTCTTAATTATATGTTAATTTGGGGTAAAAGAAAGAGGGTTTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACGAGAC.............................................................................................................................................................................................................................................................................................................................CCTGCGA-TGGTCCG-TCGTGCCCAT--GACGGTCCGTCGTGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTCGCTTC-TGCCAGTTTTTCCAGAAATAAAGTCTGCTG-CTCAAAACGACTAAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCGTTACATTATTTGACTCTATCACTTTAATTTTCTAGTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ebPY5O/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335445" ref_strand="-" ref_description="SGN-U335445        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>agtgtcacgttccgacacggtatttttggatcggagtgtcacgttccgacacggtattcttggatcggagtgtcacattccgacacggtattcttggatcggagtgtcacgttccgacacggtattcttggatcggagtgtcacgttccgacacggtattcttggatcggagtatcacgttccgacacgataatattaaatgataaatatgttgaattaatgaaagatactcaatctcaaagaactcaactcccaaaatggtttggtttggaggcatgagtcctcatatgtgatcttgataccgttgacttaatacgtgcttactttaatgttattgacacttgttcatgttgtttgttgcttatcacatgttaagtgctatagttgagttcatactattattctttgtatattagttactattttgggttgaccgatgatacttactcagtacatgttgcctcgtactgagccctacttgttttcttctttctttttcttttatgaaatgcagcaagtgtacctatgacttctgatttccctcagctctagccagcctcccgcatatcaagttccagggtgagctatctattcaagctcgtgttggattctctcggtcatgacatgatgtcatatactttcggacacataccattttattcttttattttagtgtaatcgatattcttagacttagtattggagattagatgtccttgatgtgatgactatcagattttgggatgataagtattaaactttagaaaattgtttaaattggttgcttagtatctttgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0165I16-8Bh7R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0165I16.1" temp_strand="+" temp_description="C07HBa0165I16.1  AC217497.1 htgs_phase:2 submitted_to_sgn_as:gi|167832399|gb|AC217497.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0165I16, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="61406" stop="62801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61706" g_stop="62489" g_length="784"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="788" r_length="788" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="798" polyA_stop="816"/>
      <MATCH_line gen_id="C07HBa0165I16.1" gen_strand="+" ref_id="SGN-U335445" ref_strand="-">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0165I16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335445" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="61706" e_stop="62489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGTCACGTTCCGACACAATATTCTTGGATCGGAGTGTCATGTTCTGACACAATATTCTTGGATCGGAGTGTCACGTTCCGACACGGTATTCTTGGATCGGAATGTCACTTTCCG-CACGATATTCTTGGATCGGAGTGTCACGTTCCGACACGATATTCTTGGATCGGAGTGTCACGTTCCGACACGATAATATTAAA-GAAAAACATGTTGAATTAATGGAAGGTACTCAAACTCAAAGAACTCAACTCCCAAAATGGTTTGGTTTGGAGGCATGAGTCCTCATGTGGGATCTTGATATCATTGACTTATTACGAGCTTACTTTGATGTTGTTGATACTTGTTCATGTTGTTTGTTGTTTATCACCTGTTAAGTGCTATAGTTGAGTTCATACTATTGTTTATTGTATATTAGTTACTATTTTGGGTTGACCGATGATACTTACTCAGTACATGTTGCCTCGTACTGAGTCCTACTTGTTTTCTTCTTTGTTTTCCTTTTATGAAATGCAGCGAGTGTACCTATGACTTCTGATTTCCCTCAGCTCTAGCTAGCCTCCCGCATATCAAGTTACAGGGTGAGCTATCCATTCAAGCTCGTGTTGGATTCTCTCGGTCATGACATGATGTCCTATACTTTCGGACACATACTATTTTATTC-TTTATTTTAGTGTATTCGATATTCTTAGACTTAGTATTGGAGATTAGATGTCCTTGATGTGATGACTATCAGA-TTTGGGATGATAAGTATTAAACTTTAGAAACTTATTTAAATTGGTTGCTTA</genome_strand>
        <mrna_strand>AGTGTCACGTTCCGACACGGTATTTTTGGATCGGAGTGTCACGTTCCGACACGGTATTCTTGGATCGGAGTGTCACATTCCGACACGGTATTCTTGGATCGGAGTGTCACGTTCCGACACGGTATTCTTGGATCGGAGTGTCACGTTCCGACACGGTATTCTTGGATCGGAGTATCACGTTCCGACACGATAATATTAAATGATAAATATGTTGAATTAATGAAAGATACTCAATCTCAAAGAACTCAACTCCCAAAATGGTTTGGTTTGGAGGCATGAGTCCTCATATGTGATCTTGATACCGTTGACTTAATACGTGCTTACTTTAATGTTATTGACACTTGTTCATGTTGTTTGTTGCTTATCACATGTTAAGTGCTATAGTTGAGTTCATACTATTATTCTTTGTATATTAGTTACTATTTTGGGTTGACCGATGATACTTACTCAGTACATGTTGCCTCGTACTGAGCCCTACTTGTTTTCTTCTTTCTTTTTCTTTTATGAAATGCAGCAAGTGTACCTATGACTTCTGATTTCCCTCAGCTCTAGCCAGCCTCCCGCATATCAAGTTCCAGGGTGAGCTATCTATTCAAGCTCGTGTTGGATTCTCTCGGTCATGACATGATGTCATATACTTTCGGACACATACCATTTTATTCTTTTATTTTAGTGTAATCGATATTCTTAGACTTAGTATTGGAGATTAGATGTCCTTGATGTGATGACTATCAGATTTTGGGATGATAAGTATTAAACTTTAGAAAATTGTTTAAATTGGTTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ebPY5O/lycopersicum_combined_unigene_seqs" ref_id="SGN-U346766" ref_strand="+" ref_description="SGN-U346766        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|48057665|gb|AAT39964.1| putative gag polyprotein [Solanum demissum] (evalue: 1e-36, score=156)">
      <seq>tatgataagtaatccactctttgtgtcaactgccccgactaacaacatcctgtagacaatgatggtgcccaaatccaacagcgatcctctgcccaaagttcggcttgatcacagttacactcttgaagaggccattaaaattccaagctctcatcccaacattcatcaatatggttaccctgtcaaaattgagaagatggtcaagaatgaggaacatgaagaaatgactaagaaaatgaagagttctgaacagagtataagagatatgaaaggaccaagaggccacaaaggcatctcgttcagtgacttgtgtatgtttccctcacgtccatttgcctgctggttttaaaattccaaagtttgaaaaatacgatggtcacggagacctcatagctcatctaaagatatattgcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0165I16-8Bh7R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0165I16.1" temp_strand="+" temp_description="C07HBa0165I16.1  AC217497.1 htgs_phase:2 submitted_to_sgn_as:gi|167832399|gb|AC217497.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0165I16, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="76194" stop="77204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76490" g_stop="76904" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0165I16.1" gen_strand="+" ref_id="SGN-U346766" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0165I16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76490" e_stop="76904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATAAGTAATCCACTCTTTGTGTCAACTGCCCCGACTAACAGCATCCCGCAGCCAACGATGGTGCCCAAATCCAACAGCGATCCTCCGCCCAAAGTTCGGCGTGAGCAGAGTTACATTCTTGAAGAGACCATTAAAATTCCAAGTTCTCATCCCCACATTCATCAATATAGTTCCCCTGTTGAAATTGAGAGGATGGTCAAGAATGAGGAACATGAAGAAATGACTAAGAAAATGAAGAGTTTGGAACAGAGTATAAGAGATATGCAAGGACTAGGAGGCCACAAAGGCATCTCATTCAGTGACTTGTGTATGTTT-CCTCACGTCCATTTACCTGCTGGTTTTAAAACTCCAAAGTTTGAAAAATATGATGGTCACGGAGACCCCATATCTCATCTAAAGAGATATTGCAAC</genome_strand>
        <mrna_strand>TATGATAAGTAATCCACTCTTTGTGTCAACTGCCCCGACTAACAACATCCTGTAGACAATGATGGTGCCCAAATCCAACAGCGATCCTCTGCCCAAAGTTCGGCTTGATCACAGTTACACTCTTGAAGAGGCCATTAAAATTCCAAGCTCTCATCCCAACATTCATCAATATGGTTACCCTGTCAAAATTGAGAAGATGGTCAAGAATGAGGAACATGAAGAAATGACTAAGAAAATGAAGAGTTCTGAACAGAGTATAAGAGATATGAAAGGACCAAGAGGCCACAAAGGCATCTCGTTCAGTGACTTGTGTATGTTTCCCTCACGTCCATTTGCCTGCTGGTTTTAAAATTCCAAAGTTTGAAAAATACGATGGTCACGGAGACCTCATAGCTCATCTAAAGATATATTGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ebPY5O/lycopersicum_combined_unigene_seqs" ref_id="SGN-U342831" ref_strand="+" ref_description="SGN-U342831        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|48057665|gb|AAT39964.1| putative gag polyprotein [Solanum demissum] (evalue: 1e-50, score=160)">
      <seq>ggaaaaatttcatgaatatgctatcagatggagggaacaagctgctaggtttaaaccaccgatgaaggagtcagagatgattgacgtttttctccaggcgcaagaacctgattactttctctatctgctttctgccgtagggaagacattcgctgaagttattaaggtaggggaaatggtggaaaatggtatcaagtctggaaagattgtaagtcaggctgccttaaaatccacaacacaagtgcttcaaaatggttctggaaatattgagggaagaagagaagggaggatgtggccactattgtatcagcgcctaggactcatgttctaggtaattccccacaacactattttccttcccaagctccacaatattctatgccatacactccatatcatggttttaatgcacaaccaattgcacccccttcttatccaccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0165I16-8Bh7R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0165I16.1" temp_strand="+" temp_description="C07HBa0165I16.1  AC217497.1 htgs_phase:2 submitted_to_sgn_as:gi|167832399|gb|AC217497.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0165I16, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="76817" stop="77860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77117" g_stop="77560" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0165I16.1" gen_strand="+" ref_id="SGN-U342831" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0165I16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77117" e_stop="77560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAATTTTCGTGAATATGCTATCAGATGGAGGGAACAAGCTGCTAGGGTTAAACCACCGATGAAGGAGTCAGAGATGATTGACGTTTTTCTCCAGGCGCAAGAACCTGATTACTTTCACTATCTGCTTTCTGCCGTAGGGAAAACATTTGCTGAAGTTATTAAGGTGGGGGAAATGGTGGAAAATGGCATCAAGTCTGGAAAGATTGTAAGTCAGGCTGCCCTAAAAGCCACAACACAAGTGCTTCAAAATGGTCCTGGAAATATTGGAGGGAAGAAGAGAAGGGAGGATGTGGCCACTATTGTATCAGCGCCTAGAACTCATGTTCTAGGTAATTCCCCACAACACTATTTTCCTTTCCAAGCTCCACAATATTCTATGCCATACACTCCATATCATGTTTTTAATGCACGACCAATTGCACCCCCTTCTTATCCACAATG</genome_strand>
        <mrna_strand>GGAAAAATTTCATGAATATGCTATCAGATGGAGGGAACAAGCTGCTAGGTTTAAACCACCGATGAAGGAGTCAGAGATGATTGACGTTTTTCTCCAGGCGCAAGAACCTGATTACTTTCTCTATCTGCTTTCTGCCGTAGGGAAGACATTCGCTGAAGTTATTAAGGTAGGGGAAATGGTGGAAAATGGTATCAAGTCTGGAAAGATTGTAAGTCAGGCTGCCTTAAAATCCACAACACAAGTGCTTCAAAATGGTTCTGGAAATATT-GAGGGAAGAAGAGAAGGGAGGATGTGGCCACTATTGTATCAGCGCCTAGGACTCATGTTCTAGGTAATTCCCCACAACACTATTTTCCTTCCCAAGCTCCACAATATTCTATGCCATACACTCCATATCATGGTTTTAATGCACAACCAATTGCACCCCCTTCTTATCCACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ebPY5O/lycopersicum_combined_unigene_seqs" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0165I16-8Bh7R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0165I16.1" temp_strand="+" temp_description="C07HBa0165I16.1  AC217497.1 htgs_phase:2 submitted_to_sgn_as:gi|167832399|gb|AC217497.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0165I16, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="95846" stop="96623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96146" g_stop="96322" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0165I16.1" gen_strand="+" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0165I16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96146" e_stop="96322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCGAATGGAGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACATGCACGAAGTATATCTTCCAACACTTGAATCGTTCTCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ebPY5O/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0165I16-8Bh7R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0165I16.1" temp_strand="+" temp_description="C07HBa0165I16.1  AC217497.1 htgs_phase:2 submitted_to_sgn_as:gi|167832399|gb|AC217497.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0165I16, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="97327" stop="98639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97627" g_stop="98339" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0165I16.1" gen_strand="+" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0165I16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97627" e_stop="98339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTATGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAATATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACTAGTATATCACCAATAAATACGATCACGGAGAGGTCCAAATATGGCTTAAAAATCTCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACCACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGCTTTTCACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTG-CTCACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ebPY5O/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335932" ref_strand="+" ref_description="SGN-U335932        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|2190718|gb|AAB64397.1| beta-galactosidase [unidentified cloning vector](evalue: 3e-14, score=80.1)">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0165I16-8Bh7R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0165I16.1" temp_strand="+" temp_description="C07HBa0165I16.1  AC217497.1 htgs_phase:2 submitted_to_sgn_as:gi|167832399|gb|AC217497.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0165I16, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="98780" stop="99810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99080" g_stop="99487" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0165I16.1" gen_strand="+" ref_id="SGN-U335932" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0165I16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99080" e_stop="99487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCAGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAATGTGCCTATGTCCAATGAAGAATCCATACGAGGAGCCCTAGTGGCTGCATGTTGTACTTCTGAAAGCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCAGACCTTGATCAGACAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTCTGCACTTGTTCATTTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGACGGTCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGGCCTCTT</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ebPY5O/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335073" ref_strand="+" ref_description="SGN-U335073        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0165I16-8Bh7R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0165I16.1" temp_strand="-" temp_description="C07HBa0165I16.1  AC217497.1 htgs_phase:2 submitted_to_sgn_as:gi|167832399|gb|AC217497.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0165I16, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="100092" stop="99235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99792" g_stop="99507" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0165I16.1" gen_strand="-" ref_id="SGN-U335073" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0165I16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99792" e_stop="99507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAAAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTCTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTATTTCGCGGATGGTTAGAACTAGAGCAACGACTGCGCCAACACCAACATCGGCAAGACAAGAAGAGTCTGAGCCAGCCCCTGGGGCTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ebPY5O/lycopersicum_combined_unigene_seqs" ref_id="SGN-U315286" ref_strand="+" ref_description="SGN-U315286        Tomato 200607 #1 [5 ESTs aligned]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttgttatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacataggagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacaagtctagtagagtcttaaggaacggtagggggacgcttttacttttccttgagaggctataagactttaggaaaacttcactctttcattctttctttcgtgctactacttcgagtcaattggtatctaagcgatacgaattggtatctgaccatnctcactctcttgccagatgggtagaactagagcaacgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0165I16-8Bh7R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0165I16.1" temp_strand="-" temp_description="C07HBa0165I16.1  AC217497.1 htgs_phase:2 submitted_to_sgn_as:gi|167832399|gb|AC217497.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0165I16, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="100757" stop="99266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100457" g_stop="99566" g_length="892"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="888" r_length="888" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0165I16.1" gen_strand="-" ref_id="SGN-U315286" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>892</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0165I16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100457" e_stop="99566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATAAACTTAATTCCCAAATGAGTATGGTGTTGAGGCTTGAGCCCTCATGGATGAACTTGATGGTAATTATTGATGATTATAGTACTTGTTGTTGTTACATGTTGAGTTTTATAGTTGA-TTTACGATAATATTTGATATATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACTCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTACAGCAAACGTGCCGTCATCTTTGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACCTCCGGCATGGACTAACTTCTTATGT-A-TTTTTAGCTT-TTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTGGTTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAAAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTCTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTT-GAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTATTTCGCGGATGGTTAGAACTAGAGCAACGAC</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGT-GTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTTAATA---ATAG-TAGT-TATT-GATTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTGGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCTTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAACTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTCGAGT-CAATTGGTATCTAAGCGATACGAATTGGTATCTGACCATNCTCACTCTCTTGC-CAGATGGGTAGAACTAGAGCAACGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ebPY5O/lycopersicum_combined_unigene_seqs" ref_id="SGN-U345321" ref_strand="+" ref_description="SGN-U345321        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT3G01410.1 | Symbol: None | RNase H domain-containing protein, low similarity to GAG-POL precursor (Oryza sativa (japonica cultivar-group)) GI:5902445; contains Pfam profile: PF00075 RNase H | chr3:153446-155606 REVERSE | Aliases: T13O15.5, T13O15_5 (evalue: 1e-06, score=50.4) genbank/nr: RNase(evalue: 8e-45, score=120)">
      <seq>aagcatcaaatgaccaagatgcgatggttgggtgcaatacttcgggtggctggtgaatgaaattcacatgaaattgacaagcatcacatttcctggcataatataagcaatctttcaccatggttggccagtaataccccatcctctttatgtggaaatgaagttttggtccagattgatgtgatccacataaagtgtgcttcttgcggggcttgaatcgtttcttcctctcccaaacatcgtaataacataccctcaaatgatcttctatataatgtatccttgtagtaaaggaaacgaggtgcacgacgacgtatgtcagttcttcttcttggattttctggaagtatcccataacataggtagtcaatgatgggttgtctccaatcttccttcgcatcttcaacaatggagacgatatgatcaagcttatttttaatatattcttcctcatttgacggtggtactatctatttttgacagacagttacttgcgtttgattaggaagggttaacgttgaagctagagtagccaatgcatcatctttcttattctctgttcgacgcacatgctgaagggttacatcaccaatccatcttatcaatttttaagcataatcatgataaggtcgcaattcaggcctttttacgtcataacttcctaagagttgattaatcaccaattgagagtcaccaaagacctataaatgtaattgtttcatgttaacggccatttcaagtccaagtatcagtgcttgatattcagcgacattattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0165I16-8Bh7R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0165I16.1" temp_strand="-" temp_description="C07HBa0165I16.1  AC217497.1 htgs_phase:2 submitted_to_sgn_as:gi|167832399|gb|AC217497.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0165I16, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="105479" stop="104096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105179" g_stop="104396" g_length="784"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="778" r_length="778" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0165I16.1" gen_strand="-" ref_id="SGN-U345321" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0165I16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105179" e_stop="104396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCGTCAAATGACCAAGATGCAATGGTTGGGTGCAATACTTCGGGTGACTGATGTTTGAAATTTGCATGAAATTGACAAACATCGCATTTCCTGGCATAATATAAGCAATCTTTCACCATGGCTGGCCAGTAATACCCCATCCTCTTTTATGTGAAAGTGAAGTTTTGGTCCAGATTGATGTGATCCACATACTCCTGAGTTTGCTTCTTGCAGAGCTTGAATCGCTTCTTTATCTCCCAAACATCGTAATAACATACCCTCAAATGATCTCCTATATAATGTATCCTTGTAGTAAAGGAAATGAGGTGCACGACGACGTATGTTAGTTCTTCTTCTTGGATTTTCTGGAAGTATCCCATAACATAGGTAGTTAATGATGGGTTGTCTCCAATCTTCCTTCGCAGCTTCAACAATGGTGGCGATATGATCAAGCTTATTTTCAATATATTCTTCCTCATTTGACGGTGGTACTATCCATTTTTGATAGACAGTTACTTGTGTTTGATCAGGAAGGGTTAGCGTTGAAGCTAGAGTAGCCAATGCATCAGCTTTCTTATTCTCTGTTCAACGCACATGTTGAAGGGTTACATCTCCAAGCCATCTTATCAACTTTTGAGCATTATCATAATAAGGGCACAATTCAGGCTTTTTTACCTCATAACTTCTTAAGAGTTGATTAATCACCAATTGAGAGTCACCAAAGACCTGTAAATGTAATTGTTTCATGTCAACGACCATTTCAAGTCCAAGTATCAATGCTTGATATTCATCGACATTATTGG</genome_strand>
        <mrna_strand>AAGCATCAAATGACCAAGATGCGATGGTTGGGTGCAATACTTCGGGTGGCTGGTGAATGAAATTCACATGAAATTGACAAGCATCACATTTCCTGGCATAATATAAGCAATCTTTCACCATGGTTGGCCAGTAATACCCCATCCTC-TTTATGTGGAAATGAAGTTTTGGTCCAGATTGATGTGATCCACATA-----AAGTGTGCTTCTTGCGGGGCTTGAATCGTTTCTTCCTCTCCCAAACATCGTAATAACATACCCTCAAATGATCTTCTATATAATGTATCCTTGTAGTAAAGGAAACGAGGTGCACGACGACGTATGTCAGTTCTTCTTCTTGGATTTTCTGGAAGTATCCCATAACATAGGTAGTCAATGATGGGTTGTCTCCAATCTTCCTTCGCATCTTCAACAATGGAGACGATATGATCAAGCTTATTTTTAATATATTCTTCCTCATTTGACGGTGGTACTATCTATTTTTGACAGACAGTTACTTGCGTTTGATTAGGAAGGGTTAACGTTGAAGCTAGAGTAGCCAATGCATCATCTTTCTTATTCTCTGTTCGACGCACATGCTGAAGGGTTACATCACCAATCCATCTTATCAATTTTTAAGCATAATCATGATAAGGTCGCAATTCAGGCCTTTTTACGTCATAACTTCCTAAGAGTTGATTAATCACCAATTGAGAGTCACCAAAGACCTATAAATGTAATTGTTTCATGTTAACGGCCATTTCAAGTCCAAGTATCAGTGCTTGATATTCAGCGACATTATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>26</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2165" PGL_stop="2617"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2165" e_stop="2617"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="2165" e_stop="2617" e_length="453"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2165" stop="2617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337341" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTAACGATTCAAAAAAATAAAATTTTATAAATAAGAATAAATAAGTATTTAAGGGCGTAATTGTCCTTTCACGTTTTAAATGAATAAATAAATAAATAAATCAAAAACAGATTTGTATTTATTTATTTTAAATGTTATTTGACTAATTCTTGAATTAGTTTCCTAATCCAAATAGTCCTCTCTCTCTCACGCTTCTTAACTCCCTCTCTCACGTTCTCCATCTTCCTCACATTATTTCTGCCAAAATATCAACAGTTTTCATGCTTGAAGAACTCACAAAAATTTTTAAGCAAAAGAAAAAATAATCAAAACGTCAAGGCTAAGAGAGGTTCGTCGAGAGAGGTATACTTTGAAGTGAATTGGGAGTGGTTTGGAGGAGTTTTCCGGACAGCAACATTAAAGTTTGAACATCGATTAAGGTATGGGTTTCTTCTCTCTTGGTTCCTTTCCCA</gDNA_template>
            <first_frame> C  N  D  S  K  K  *  N  F  I  N  K  N  K  *  V  F  K  G  V  I  V  L  S  R  F  K  *  I  N  K  *  I  N  Q  K  Q  I  C  I  Y  L  F  *  M  L  F  D  *  F  L  N  *  F  P  N  P  N  S  P  L  S  L  T  L  L  N  S  L  S  H  V  L  H  L  P  H  I  I  S  A  K  I  S  T  V  F  M  L  E  E  L  T  K  I  F  K  Q  K  K  K  *  S  K  R  Q  G  *  E  R  F  V  E  R  G  I  L  *  S  E  L  G  V  V  W  R  S  F  P  D  S  N  I  K  V  *  T  S  I  K  V  W  V  S  S  L  L  V  P  F  P </first_frame>
            <second_frame>  V  T  I  Q  K  N  K  I  L  *  I  R  I  N  K  Y  L  R  A  *  L  S  F  H  V  L  N  E  *  I  N  K  *  I  K  N  R  F  V  F  I  Y  F  K  C  Y  L  T  N  S  *  I  S  F  L  I  Q  I  V  L  S  L  S  R  F  L  T  P  S  L  T  F  S  I  F  L  T  L  F  L  P  K  Y  Q  Q  F  S  C  L  K  N  S  Q  K  F  L  S  K  R  K  N  N  Q  N  V  K  A  K  R  G  S  S  R  E  V  Y  F  E  V  N  W  E  W  F  G  G  V  F  R  T  A  T  L  K  F  E  H  R  L  R  Y  G  F  L  L  S  W  F  L  S   </second_frame>
            <third_frame>   *  R  F  K  K  I  K  F  Y  K  *  E  *  I  S  I  *  G  R  N  C  P  F  T  F  *  M  N  K  *  I  N  K  S  K  T  D  L  Y  L  F  I  L  N  V  I  *  L  I  L  E  L  V  S  *  S  K  *  S  S  L  S  H  A  S  *  L  P  L  S  R  S  P  S  S  S  H  Y  F  C  Q  N  I  N  S  F  H  A  *  R  T  H  K  N  F  *  A  K  E  K  I  I  K  T  S  R  L  R  E  V  R  R  E  R  Y  T  L  K  *  I  G  S  G  L  E  E  F  S  G  Q  Q  H  *  S  L  N  I  D  *  G  M  G  F  F  S  L  G  S  F  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0165I16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2319" stop="2615"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISFLIQIVLSLSRFLTPSLTFSIFLTLFLPKYQQFSCLKNSQKFLSKRKNNQNVKAKRGSSREVYFEVNWEWFGGVFRTATLKFEHRLRYGFLLSWFLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="18856" PGL_stop="19631"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18856" e_stop="19631"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="18856" e_stop="19631" e_length="776"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18856" stop="19631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327066" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATTTTTGAATTTTCACCGGAGATCTTTGTCCGATTAACTCCGATTTTCCGATGCCGGCGAAGAATATGTTGTTCCATATAGGGATAATTCTATCCCTGTTTTTGCTAAATCCGATTCCATCTCAATCTGCAGTTTCTAGCATAGATCTGGGATCAGAATGGTTCAAAGTCGCCGTGGTTAACCTAAAACCCGGACAACCTCCAATCTCTATAGCGATTAACGAAATGTCCAAAAGGAAAACTCCCTCACTCGTCGCATTTCATTCCGAGAGTCGCCTCATCGGTGAAGAAGCTTCTGGAATCGTCGCTCGCTATCCAAACAAGGTCTATTCTCATCTCCGTGATCTAATATCAAAACCCTTTCCCCACGTTTCCAAAACCCTAGGATCTCTTTACCTGACTTACGACATTTCTCCCGAGGAATCGCGGAATGTGGCGGTTTTTAAAACTGAAAATGGTAATTTTACGGCGGAGGAGTTGGTAGCGATGTTGTTCAAGTATGCTCTTGGATTGGCGGAAGCGCATACTAGGGGAACACCGGTGAAAGATGCTGTGGTGACTGTGCCTCCGTATATGGGAGTAGCGGAAAGGAAAGGGCTGCTTGTTGCTGCGGAATTGGCTGGTATTAATGTGTTGGCGCTTGTGAATGAACATTCTGGTGCAGCGTTGCAGTATGGGATTGATAAAGATTTTTCGAATGGTTCAAGGCATGTGATTTTCTATGATATGGGTGCGGGTAGTACATATGCTGCCTTGGTGTATTTCTCTGCTTATA</gDNA_template>
            <first_frame> Q  F  L  N  F  H  R  R  S  L  S  D  *  L  R  F  S  D  A  G  E  E  Y  V  V  P  Y  R  D  N  S  I  P  V  F  A  K  S  D  S  I  S  I  C  S  F  *  H  R  S  G  I  R  M  V  Q  S  R  R  G  *  P  K  T  R  T  T  S  N  L  Y  S  D  *  R  N  V  Q  K  E  N  S  L  T  R  R  I  S  F  R  E  S  P  H  R  *  R  S  F  W  N  R  R  S  L  S  K  Q  G  L  F  S  S  P  *  S  N  I  K  T  L  S  P  R  F  Q  N  P  R  I  S  L  P  D  L  R  H  F  S  R  G  I  A  E  C  G  G  F  *  N  *  K  W  *  F  Y  G  G  G  V  G  S  D  V  V  Q  V  C  S  W  I  G  G  S  A  Y  *  G  N  T  G  E  R  C  C  G  D  C  A  S  V  Y  G  S  S  G  K  E  R  A  A  C  C  C  G  I  G  W  Y  *  C  V  G  A  C  E  *  T  F  W  C  S  V  A  V  W  D  *  *  R  F  F  E  W  F  K  A  C  D  F  L  *  Y  G  C  G  *  Y  I  C  C  L  G  V  F  L  C  L   </first_frame>
            <second_frame>  N  F  *  I  F  T  G  D  L  C  P  I  N  S  D  F  P  M  P  A  K  N  M  L  F  H  I  G  I  I  L  S  L  F  L  L  N  P  I  P  S  Q  S  A  V  S  S  I  D  L  G  S  E  W  F  K  V  A  V  V  N  L  K  P  G  Q  P  P  I  S  I  A  I  N  E  M  S  K  R  K  T  P  S  L  V  A  F  H  S  E  S  R  L  I  G  E  E  A  S  G  I  V  A  R  Y  P  N  K  V  Y  S  H  L  R  D  L  I  S  K  P  F  P  H  V  S  K  T  L  G  S  L  Y  L  T  Y  D  I  S  P  E  E  S  R  N  V  A  V  F  K  T  E  N  G  N  F  T  A  E  E  L  V  A  M  L  F  K  Y  A  L  G  L  A  E  A  H  T  R  G  T  P  V  K  D  A  V  V  T  V  P  P  Y  M  G  V  A  E  R  K  G  L  L  V  A  A  E  L  A  G  I  N  V  L  A  L  V  N  E  H  S  G  A  A  L  Q  Y  G  I  D  K  D  F  S  N  G  S  R  H  V  I  F  Y  D  M  G  A  G  S  T  Y  A  A  L  V  Y  F  S  A  Y  </second_frame>
            <third_frame>   I  F  E  F  S  P  E  I  F  V  R  L  T  P  I  F  R  C  R  R  R  I  C  C  S  I  *  G  *  F  Y  P  C  F  C  *  I  R  F  H  L  N  L  Q  F  L  A  *  I  W  D  Q  N  G  S  K  S  P  W  L  T  *  N  P  D  N  L  Q  S  L  *  R  L  T  K  C  P  K  G  K  L  P  H  S  S  H  F  I  P  R  V  A  S  S  V  K  K  L  L  E  S  S  L  A  I  Q  T  R  S  I  L  I  S  V  I  *  Y  Q  N  P  F  P  T  F  P  K  P  *  D  L  F  T  *  L  T  T  F  L  P  R  N  R  G  M  W  R  F  L  K  L  K  M  V  I  L  R  R  R  S  W  *  R  C  C  S  S  M  L  L  D  W  R  K  R  I  L  G  E  H  R  *  K  M  L  W  *  L  C  L  R  I  W  E  *  R  K  G  K  G  C  L  L  L  R  N  W  L  V  L  M  C  W  R  L  *  M  N  I  L  V  Q  R  C  S  M  G  L  I  K  I  F  R  M  V  Q  G  M  *  F  S  M  I  W  V  R  V  V  H  M  L  P  W  C  I  S  L  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0165I16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18866" stop="19630"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFTGDLCPINSDFPMPAKNMLFHIGIILSLFLLNPIPSQSAVSSIDLGSEWFKVAVVNLKPGQPPISIAINEMSKRKTPSLVAFHSESRLIGEEASGIVARYPNKVYSHLRDLISKPFPHVSKTLGSLYLTYDISPEESRNVAVFKTENGNFTAEELVAMLFKYALGLAEAHTRGTPVKDAVVTVPPYMGVAERKGLLVAAELAGINVLALVNEHSGAALQYGIDKDFSNGSRHVIFYDMGAGSTYAALVYFSAY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="32157" PGL_stop="27977"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32157" e_stop="32039"/>
            <exon e_start="31094" e_stop="31044"/>
            <exon e_start="30683" e_stop="30559"/>
            <exon e_start="30423" e_stop="30310"/>
            <exon e_start="30223" e_stop="30116"/>
            <exon e_start="29995" e_stop="29904"/>
            <exon e_start="29624" e_stop="29483"/>
            <exon e_start="29338" e_stop="29244"/>
            <exon e_start="28989" e_stop="28860"/>
            <exon e_start="28749" e_stop="28605"/>
            <exon e_start="28499" e_stop="27977"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.867" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.221" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.906" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.788" e_score="1.000"/>
          <exon-intron don_prob="0.519" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.798" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32157" e_stop="32039" e_length="119"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="32038" i_stop="31095" i_length="944"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31094" e_stop="31044" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.867" acc_prob="0.997">
            <gDNA_intron_boundary i_start="31043" i_stop="30684" i_length="360"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30683" e_stop="30559" e_length="125"/>
          </exon>
          <intron i_serial="3" don_prob="0.221" acc_prob="0.965">
            <gDNA_intron_boundary i_start="30558" i_stop="30424" i_length="135"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="30423" e_stop="30310" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.906" acc_prob="0.995">
            <gDNA_intron_boundary i_start="30309" i_stop="30224" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="30223" e_stop="30116" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.900" acc_prob="0.788">
            <gDNA_intron_boundary i_start="30115" i_stop="29996" i_length="120"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="29995" e_stop="29904" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.519" acc_prob="0.997">
            <gDNA_intron_boundary i_start="29903" i_stop="29625" i_length="279"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="29624" e_stop="29483" e_length="142"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="29482" i_stop="29339" i_length="144"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="29338" e_stop="29244" e_length="95"/>
          </exon>
          <intron i_serial="8" don_prob="0.909" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29243" i_stop="28990" i_length="254"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="28989" e_stop="28860" e_length="130"/>
          </exon>
          <intron i_serial="9" don_prob="0.916" acc_prob="0.988">
            <gDNA_intron_boundary i_start="28859" i_stop="28750" i_length="110"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="28749" e_stop="28605" e_length="145"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.798">
            <gDNA_intron_boundary i_start="28604" i_stop="28500" i_length="105"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="28499" e_stop="27977" e_length="523"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32157" stop="32039"/>
              <exon start="31094" stop="31044"/>
              <exon start="30683" stop="30559"/>
              <exon start="30423" stop="30310"/>
              <exon start="30223" stop="30116"/>
              <exon start="29995" stop="29904"/>
              <exon start="29624" stop="29483"/>
              <exon start="29338" stop="29244"/>
              <exon start="28989" stop="28860"/>
              <exon start="28749" stop="28605"/>
              <exon start="28499" stop="27977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318333" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTCTTTCCTTTGCTTTTATAACATTAATAAGAAAAATTAATTAATTACACATAACATAACATTGCAGCAGTTTTGGCTTAAGGACAAATTCTCTTCCTTTTCCTCTTTGCTTTCAG : GTCGGTTTTGCGCAGATAGATCATTGCCAGGGGAGGTTGGTGCCCCTTGAG : AAATGGATTTTGTGGAGTTGAAGAGACGGAGCAGCACTTCTAGGAGACTGCTCTTGCTTGCTGGCATTGCTGCGATTTGTTTATTTATATTCAGAAATTCATCGAGTTTTAGTACCTCTGTCAAG : TTCTCTCAACACGAACCAGGTGTAACTCATGTGTTAGTGACGGGAGGTGCTGGCTTCATTGGTTCTCATGCGTCCCTTCGTCTCCTAAAGGATTCGTATCGTGTAACTATAGTG : GACAATCTTTCCCGTGGAAATATGGGCTCGGTAAAAGTTCTCCAGGAACTTTTCCCAGAACCAGGGCGACTTCAGTTTATTTATGCTGATTTGGGAGATGCTGCTGCT : GTTAACAAAATCTTTTCACAAAATGCATTTGATGCTGTGATGCATTTTGCAGCTGTTGCATATGTTGGTGAAAGTACTCAAGAACCGCTTAG : GTATTATCATAACATAACATCAAATACTCTGCTTCTAGTTAAGGCAATGGCAGCACACGGTGTAAAAACACTAATCTATTCAAGTACTTGTGCAACATATGGAGAGCCTGAGAAAATGCCTATTACGGAAGTGACTCCACAA : TCCCCAATAAATCCATATGGAAAAGCAAAGAAAATGGCTGAAGATATCATATTGGACTTCTCAAAGACTTCAGATATGGCTGTCATGATTTTAAG : GTACTTCAATGTGATTGGCTCGGATCCTGAAGGAAGGTTAGGAGAAGCTCCGCCCCCAGAATTACGTGAGCAAGGTCGGATATCTGGTGCTTGTTTTGATGCAGCCAGGGGCATAATTCCAGGATTGAAA : ATAAGAGGAGTAGATTACACCACACCTGATGGCACTTGTGTAAGAGACTACATTGATGTGACTGACCTGATTGACGCTCATGTTAAAGCTCTCGAGCATGCTAAACCAAGCAAAGTTGGCATCTACAATGTCGGGACTGGAAAAG : GTAGTTCAGTGAAACAATTTGTGGAAGCTTGTAAAAAGGCAACAGGAGTTGACATAAAGATTGATTACCTTAGTAGACGTCCAGGAGACTACGCTGAAGTCTACAGTGATCCTTCTAAAATTAGACGTGAACTGAACTGGATCGCGAGATATTCACTGGAGGAGAGTTTAGCAATAGCATGGAGATGGCAAAAGGTACACAGAAATGGTTACAACTAAAATAAGTGCAGTTTTGCTAACCAGGTTCTACAAAGAACCTTAACGCGTAGTCGAGGAAAACAGGACTGGTTTCTTGCCAATTCTCACAACTCCTTGTCAATATCAGATATCAAAATCTCATTTTGTTATTTATAGCTTTTACAGTTTGTTAGATGTATACCACCAACAAATAATTTTAGTCAGGCTTTACATATTCTTGTTCATTAGTAGGCATTTTAATTCCCAAGTGTATTACAGTATTGGATAACAAAGTGACAACAAAATTGTTGCTGGGGAAATGAATATATTTTTTGTTTTGTTTTTAA</gDNA_template>
            <first_frame> N  F  F  P  L  L  L  *  H  *  *  E  K  L  I  N  Y  T  *  H  N  I  A  A  V  L  A  *  G  Q  I  L  F  L  F  L  F  A  F  R :   S  V  L  R  R  *  I  I  A  R  G  G  W  C  P  L  R :   N  G  F  C  G  V  E  E  T  E  Q  H  F  *  E  T  A  L  A  C  W  H  C  C  D  L  F  I  Y  I  Q  K  F  I  E  F  *  Y  L  C  Q   : V  L  S  T  R  T  R  C  N  S  C  V  S  D  G  R  C  W  L  H  W  F  S  C  V  P  S  S  P  K  G  F  V  S  C  N  Y  S   : G  Q  S  F  P  W  K  Y  G  L  G  K  S  S  P  G  T  F  P  R  T  R  A  T  S  V  Y  L  C  *  F  G  R  C  C  C   : C  *  Q  N  L  F  T  K  C  I  *  C  C  D  A  F  C  S  C  C  I  C  W  *  K  Y  S  R  T  A  *  :  V  L  S  *  H  N  I  K  Y  S  A  S  S  *  G  N  G  S  T  R  C  K  N  T  N  L  F  K  Y  L  C  N  I  W  R  A  *  E  N  A  Y  Y  G  S  D  S  T   : I  P  N  K  S  I  W  K  S  K  E  N  G  *  R  Y  H  I  G  L  L  K  D  F  R  Y  G  C  H  D  F  K  :  V  L  Q  C  D  W  L  G  S  *  R  K  V  R  R  S  S  A  P  R  I  T  *  A  R  S  D  I  W  C  L  F  *  C  S  Q  G  H  N  S  R  I  E   : N  K  R  S  R  L  H  H  T  *  W  H  L  C  K  R  L  H  *  C  D  *  P  D  *  R  S  C  *  S  S  R  A  C  *  T  K  Q  S  W  H  L  Q  C  R  D  W  K  R :   *  F  S  E  T  I  C  G  S  L  *  K  G  N  R  S  *  H  K  D  *  L  P  *  *  T  S  R  R  L  R  *  S  L  Q  *  S  F  *  N  *  T  *  T  E  L  D  R  E  I  F  T  G  G  E  F  S  N  S  M  E  M  A  K  G  T  Q  K  W  L  Q  L  K  *  V  Q  F  C  *  P  G  S  T  K  N  L  N  A  *  S  R  K  T  G  L  V  S  C  Q  F  S  Q  L  L  V  N  I  R  Y  Q  N  L  I  L  L  F  I  A  F  T  V  C  *  M  Y  T  T  N  K  *  F  *  S  G  F  T  Y  S  C  S  L  V  G  I  L  I  P  K  C  I  T  V  L  D  N  K  V  T  T  K  L  L  L  G  K  *  I  Y  F  L  F  C  F  * </first_frame>
            <second_frame>  I  S  F  L  C  F  Y  N  I  N  K  K  N  *  L  I  T  H  N  I  T  L  Q  Q  F  W  L  K  D  K  F  S  S  F  S  S  L  L  S   : G  R  F  C  A  D  R  S  L  P  G  E  V  G  A  P  *   : E  M  D  F  V  E  L  K  R  R  S  S  T  S  R  R  L  L  L  L  A  G  I  A  A  I  C  L  F  I  F  R  N  S  S  S  F  S  T  S  V  K  :  F  S  Q  H  E  P  G  V  T  H  V  L  V  T  G  G  A  G  F  I  G  S  H  A  S  L  R  L  L  K  D  S  Y  R  V  T  I  V  :  D  N  L  S  R  G  N  M  G  S  V  K  V  L  Q  E  L  F  P  E  P  G  R  L  Q  F  I  Y  A  D  L  G  D  A  A  A  :  V  N  K  I  F  S  Q  N  A  F  D  A  V  M  H  F  A  A  V  A  Y  V  G  E  S  T  Q  E  P  L  R :   Y  Y  H  N  I  T  S  N  T  L  L  L  V  K  A  M  A  A  H  G  V  K  T  L  I  Y  S  S  T  C  A  T  Y  G  E  P  E  K  M  P  I  T  E  V  T  P  Q  :  S  P  I  N  P  Y  G  K  A  K  K  M  A  E  D  I  I  L  D  F  S  K  T  S  D  M  A  V  M  I  L  R :   Y  F  N  V  I  G  S  D  P  E  G  R  L  G  E  A  P  P  P  E  L  R  E  Q  G  R  I  S  G  A  C  F  D  A  A  R  G  I  I  P  G  L  K  :  I  R  G  V  D  Y  T  T  P  D  G  T  C  V  R  D  Y  I  D  V  T  D  L  I  D  A  H  V  K  A  L  E  H  A  K  P  S  K  V  G  I  Y  N  V  G  T  G  K   : G  S  S  V  K  Q  F  V  E  A  C  K  K  A  T  G  V  D  I  K  I  D  Y  L  S  R  R  P  G  D  Y  A  E  V  Y  S  D  P  S  K  I  R  R  E  L  N  W  I  A  R  Y  S  L  E  E  S  L  A  I  A  W  R  W  Q  K  V  H  R  N  G  Y  N  *  N  K  C  S  F  A  N  Q  V  L  Q  R  T  L  T  R  S  R  G  K  Q  D  W  F  L  A  N  S  H  N  S  L  S  I  S  D  I  K  I  S  F  C  Y  L  *  L  L  Q  F  V  R  C  I  P  P  T  N  N  F  S  Q  A  L  H  I  L  V  H  *  *  A  F  *  F  P  S  V  L  Q  Y  W  I  T  K  *  Q  Q  N  C  C  W  G  N  E  Y  I  F  C  F  V  F   </second_frame>
            <third_frame>   F  L  S  F  A  F  I  T  L  I  R  K  I  N  *  L  H  I  T  *  H  C  S  S  F  G  L  R  T  N  S  L  P  F  P  L  C  F  Q  :  V  G  F  A  Q  I  D  H  C  Q  G  R  L  V  P  L  E  :  K  W  I  L  W  S  *  R  D  G  A  A  L  L  G  D  C  S  C  L  L  A  L  L  R  F  V  Y  L  Y  S  E  I  H  R  V  L  V  P  L  S  S :   S  L  N  T  N  Q  V  *  L  M  C  *  *  R  E  V  L  A  S  L  V  L  M  R  P  F  V  S  *  R  I  R  I  V  *  L  *  W :   T  I  F  P  V  E  I  W  A  R  *  K  F  S  R  N  F  S  Q  N  Q  G  D  F  S  L  F  M  L  I  W  E  M  L  L  L :   L  T  K  S  F  H  K  M  H  L  M  L  *  C  I  L  Q  L  L  H  M  L  V  K  V  L  K  N  R  L   : G  I  I  I  T  *  H  Q  I  L  C  F  *  L  R  Q  W  Q  H  T  V  *  K  H  *  S  I  Q  V  L  V  Q  H  M  E  S  L  R  K  C  L  L  R  K  *  L  H  N :   P  Q  *  I  H  M  E  K  Q  R  K  W  L  K  I  S  Y  W  T  S  Q  R  L  Q  I  W  L  S  *  F  *   : G  T  S  M  *  L  A  R  I  L  K  E  G  *  E  K  L  R  P  Q  N  Y  V  S  K  V  G  Y  L  V  L  V  L  M  Q  P  G  A  *  F  Q  D  *  K :   *  E  E  *  I  T  P  H  L  M  A  L  V  *  E  T  T  L  M  *  L  T  *  L  T  L  M  L  K  L  S  S  M  L  N  Q  A  K  L  A  S  T  M  S  G  L  E  K  :  V  V  Q  *  N  N  L  W  K  L  V  K  R  Q  Q  E  L  T  *  R  L  I  T  L  V  D  V  Q  E  T  T  L  K  S  T  V  I  L  L  K  L  D  V  N  *  T  G  S  R  D  I  H  W  R  R  V  *  Q  *  H  G  D  G  K  R  Y  T  E  M  V  T  T  K  I  S  A  V  L  L  T  R  F  Y  K  E  P  *  R  V  V  E  E  N  R  T  G  F  L  P  I  L  T  T  P  C  Q  Y  Q  I  S  K  S  H  F  V  I  Y  S  F  Y  S  L  L  D  V  Y  H  Q  Q  I  I  L  V  R  L  Y  I  F  L  F  I  S  R  H  F  N  S  Q  V  Y  Y  S  I  G  *  Q  S  D  N  K  I  V  A  G  E  M  N  I  F  F  V  L  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0165I16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31044" stop="30559"/>
                    <exon start="30423" stop="30310"/>
                    <exon start="30223" stop="30116"/>
                    <exon start="29995" stop="29904"/>
                    <exon start="29624" stop="29483"/>
                    <exon start="29338" stop="29244"/>
                    <exon start="28989" stop="28860"/>
                    <exon start="28749" stop="28605"/>
                    <exon start="28499" stop="28282"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1167</number_coding_nucleotides>
                  <number_encoded_amino_acids>389</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMDFVELKRRSSTSRRLLLLAGIAAICLFIFRNSSSFSTSVKFSQHEPGVTHVLVTGGAGFIGSHASLRLLKDSYRVTIVDNLSRGNMGSVKVLQELFPEPGRLQFIYADLGDAAAVNKIFSQNAFDAVMHFAAVAYVGESTQEPLRYYHNITSNTLLLVKAMAAHGVKTLIYSSTCATYGEPEKMPITEVTPQSPINPYGKAKKMAEDIILDFSKTSDMAVMILRYFNVIGSDPEGRLGEAPPPELREQGRISGACFDAARGIIPGLKIRGVDYTTPDGTCVRDYIDVTDLIDAHVKALEHAKPSKVGIYNVGTGKGSSVKQFVEACKKATGVDIKIDYLSRRPGDYAEVYSDPSKIRRELNWIARYSLEESLAIAWRWQKVHRNGYN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0165I16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28238" stop="28035"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVVEENRTGFLPILTTPCQYQISKSHFVIYSFYSLLDVYHQQIILVRLYIFLFISRHFNSQVYYSIG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="36677" PGL_stop="37230"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36677" e_stop="37230"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="36677" e_stop="37230" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36677" stop="37230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCATCATCTGAGGAAGTAGTAAGAGAAGGGGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTTTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCTGAGGTATAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCACTGGAAATAGGCACATTTCCTCGTCTGACTACAGGGCCTATAATGACAAATGACCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGTGCTGAATCTGAGGATGCCTACAATTTTCTGGTTGACTGTCATGAGCTATTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTTACATGTTGAGTGTCAACCAACAAAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  *  P  I  W  Y  *  G  G  D  S  S  I  I  *  G  S  S  K  R  R  G  G  W  G  E  *  T  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  F  C  L  S  *  R  V  I  *  S  R  P  D  T  S  S  V  F  C  T  S  T  S  G  S  *  G  I  T  C  G  Y  C  G  S  P  H  G  C  L  T  G  N  R  H  I  S  S  S  D  Y  R  A  Y  N  D  K  *  P  A  *  T  F  Q  *  V  L  E  I  E  T  S  G  L  Q  G  C  *  I  *  G  C  L  Q  F  S  G  *  L  S  *  A  I  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  K  G  T  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  S  P  S  G  T  R  A  V  T  P  P  S  S  E  E  V  V  R  E  G  E  D  G  E  N  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  F  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  V  P  E  V  *  H  A  A  T  V  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  N  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  L  H  V  E  C  Q  P  T  K  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  V  L  G  R  *  L  L  H  H  L  R  K  *  *  E  K  G  R  M  G  R  M  N  K  C  R  M  R  N  C  H  P  N  L  P  Q  R  *  S  I  R  F  L  L  I  L  A  G  Y  L  I  K  A  R  H  L  Q  C  F  L  H  Q  H  L  R  F  L  R  Y  N  M  R  L  L  W  L  P  A  W  M  P  H  W  K  *  A  H  F  L  V  *  L  Q  G  L  *  *  Q  M  T  S  M  N  F  S  V  S  S  *  N  *  N  L  R  S  S  R  V  L  N  L  R  M  P  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  Y  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0165I16.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36900" stop="37229"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HAATVAPRMDASLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYNFLVDCHELLHKMGIVERFGVEFVTYQFQGNAKMWWRLHVECQPTKAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0165I16.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36678" stop="36899"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSGTRAVTPPSSEEVVREGEDGENEQVQNEELPPQPTPEMINQVFAYLSGLSDQGQTPPVFSAPAPQVPEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="38327" PGL_stop="37997"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38327" e_stop="37997"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="38327" e_stop="37997" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38327" stop="37997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGCTTGGCTAACATCACAATTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATATCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGAAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAATATTACAGAAGCCATGCAATCACAAACCAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  L  T  S  Q  F  *  H  Y  N  P  R  S  Q  N  S  E  K  A  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  R  *  P  S  L  H  K  Y  C  S  P  Q  K  S  P  D  Q  T  Y  I  L  F  Q  L  S  Q  T  H  P  P  K  *  K  H  E  *  A  C  Q  A  I  H  N  V  N  *  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  I  L  Q  K  P  C  N  H  K  P  </first_frame>
            <second_frame>  I  C  P  R  L  G  *  H  H  N  F  S  I  T  I  Q  D  R  K  I  R  R  K  P  S  H  I  Q  N  Y  I  K  I  N  H  F  *  D  N  Q  V  Y  I  S  I  A  P  H  K  S  H  Q  T  R  P  I  Y  F  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  F  T  M  *  I  K  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Y  Y  R  S  H  A  I  T  N  Q </second_frame>
            <third_frame>   S  V  P  G  L  A  N  I  T  I  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  S  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  V  T  R  P  D  L  Y  T  F  S  T  I  T  D  S  P  T  E  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  I  T  E  A  M  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0165I16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="49062" PGL_stop="49353"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49062" e_stop="49353"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="49062" e_stop="49353" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49062" stop="49353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAATGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGAAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACAACAACACCAGCACCGGCGAGACAAGGTGCGTCTGAGCCAGCCACTGGGGCTGTAG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  R  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  L  E  R  L  *  D  F  R  K  I  S  L  F  H  S  F  F  R  A  T  T  *  V  Q  L  V  S  R  R  Y  E  L  V  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  P  T  T  T  P  A  P  A  R  Q  G  A  S  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  G  L  V  E  S  *  G  M  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  E  K  F  H  S  F  I  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  Q  Q  H  Q  H  R  R  D  K  V  R  L  S  Q  P  L  G  L  * </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  Q  V  *  *  S  L  K  E  W  *  G  D  A  F  T  F  P  *  E  A  I  R  L  *  K  N  F  T  L  S  F  F  L  S  C  Y  Y  L  S  P  I  G  I  *  A  I  R  I  G  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  A  N  N  N  T  S  T  G  E  T  R  C  V  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0165I16.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49111" stop="49353"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMVGGRLYFSLRGYKTLEKFHSFILSFVLLLESNWYLGDTNWYLTIFTLFRRWLELEQRLRQQQHQHRRDKVRLSQPLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="52070" PGL_stop="49360"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52070" e_stop="49360"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="52070" e_stop="49360" e_length="2711"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52070" stop="51358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51550" stop="50892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51481" stop="50724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51254" stop="50712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50871" stop="50313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50867" stop="49431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49792" stop="49360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACGAATCAGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGTCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTTAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATTACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAATCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACAGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCAGGAGCCATTTTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACCGAAACCGACTCAATCGAAGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACATCAAAATCATCCATTTCTAAGGTAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACTTATATACCTTTTCAACTACCACAGACTCACCCACCAGAGTAGAGACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCGGATGCCTCCGCTTCAGACCGCACAGGGAAAGCGTAACAATGGGCCCTATCGTTCATCTGTCTGTTGCCCCTACCTTGTGGTGATGTAATGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCACCACGTCCTCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAAGTGTGTAACTTCCCGAACCCTGTCCTTTAGTGTAAGAACCATTAAACTCACCTCCTTTTCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGCGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCATTCCCTTGAAACTGATATGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCGGTCGGTGGGGGAGTCACTTCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGTCTCTTGCCGCTGCTCTTC</gDNA_template>
            <first_frame> E  S  L  D  E  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  S  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  *  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  Y  E  E  V  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  G  H  H  Y  K  F  V  M  P  I  P  R  S  K  I  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  Q  I  E  Q  V  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  G  C  T  W  S  N  E  A  F  V  Q  *  L  L  K  L  C  L  *  L  S  *  L  R  R  S  H  F  I  R  G  Y  R  N  G  A  S  T  G  F  K  I  N  T  E  V  N  I  P  I  R  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  N  Y  R  N  R  L  N  R  R  Y  L  S  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  V  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  C  K  L  R  R  K  P  S  H  T  Q  N  H  I  K  I  I  H  F  *  G  N  Q  I  Y  I  S  V  A  P  H  K  V  Y  Q  T  R  L  I  Y  L  F  N  Y  H  R  L  T  H  Q  S  R  D  T  N  R  H  I  K  K  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  R  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  G  C  L  R  F  R  P  H  R  E  S  V  T  M  G  P  I  V  H  L  S  V  A  P  T  L  W  *  C  N  G  S  S  L  P  I  T  S  A  V  L  V  T  T  I  S  S  T  T  T  S  S  R  I  T  A  S  A  M  T  T  S  T  S  N  I  W  R  S  V  T  L  F  W  T  I  S  L  N  M  S  N  L  P  T  S  I  A  L  S  G  F  M  H  R  S  L  R  E  V  L  T  G  R  R  W  T  P  N  Y  S  L  *  *  R  L  N  G  S  K  C  V  T  S  R  T  L  S  F  S  V  R  T  I  K  L  T  S  F  S  K  P  F  *  C  R  C  C  G  E  V  V  W  L  H  S  F  H  F  Y  H  K  V  Y  H  F  L  E  G  F  C  R  C  R  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  L  H  K  P  A  N  P  L  L  R  T  E  T  E  L  S  G  I  S  G  *  C  T  K  L  S  L  I  S  I  N  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  T  R  E  *  G  P  S  H  R  R  C  L  Y  W  L  T  L  D  M  *  P  P  P  H  F  G  I  P  L  K  L  I  C  H  K  L  H  T  K  P  F  Y  Y  T  H  L  V  *  *  L  V  T  V  N  Q  K  I  I  S  I  L  R  F  S  T  L  E  D  R  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  C  A  Y  V  Q  W  N  I  H  A  G  S  H  S  S  R  M  L  Y  F  *  N  R  R  C  W  R  R  K  H  W  R  C  L  T  L  I  R  *  P  A  K  I  S  Q  N  L  I  D  H  L  *  G  R  L  G  W  H  F  L  I  L  H  L  F  S  F  P  I  L  P  F  S  Y  Y  F  L  G  R  W  G  S  H  F  P  S  I  R  W  A  R  C  S  S  S  S  S  R  G  R  P  P  T  T  S  T  T  V  S  C  R  C  S   </first_frame>
            <second_frame>  N  P  L  T  N  Q  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  S  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  R  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  *  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  V  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  R  V  E  T  R  I  G  I  S  R  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  K  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  T  G  K  A  *  Q  W  A  L  S  F  I  C  L  L  P  L  P  C  G  D  V  M  A  P  V  C  P  S  P  R  P  F  W  *  P  P  F  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  T  F  G  G  L  *  L  C  F  G  Q  Y  L  L  I  C  P  I  S  P  H  P  *  H  S  L  G  S  C  I  G  L  S  E  K  C  *  P  V  G  G  G  P  P  T  T  V  C  S  E  D  *  M  G  R  S  V  *  L  P  E  P  C  P  L  V  *  E  P  L  N  S  P  P  F  R  N  L  F  D  V  D  V  V  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  R  R  I  R  S  *  G  L  K  Q  S  *  V  A  Y  L  D  S  A  R  N  L  A  S  *  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  I  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  Y  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  M  S  N  G  T  S  M  R  G  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  R  V  G  W  G  G  I  S  S  F  C  T  C  S  V  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  S  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  S  L  A  A  A  L  </second_frame>
            <third_frame>   I  P  *  R  I  S  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  V  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  L  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  L  R  R  G  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  R  T  S  L  Q  I  R  N  A  H  T  S  F  E  N  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  G  M  H  L  V  *  *  S  L  C  S  I  T  L  E  V  V  P  L  T  L  L  T  P  Q  E  P  F  Y  K  G  V  *  K  W  G  E  Y  R  V  Q  D  Q  Y  R  S  Q  Y  P  Y  P  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  E  L  P  K  P  T  Q  S  K  V  L  E  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  G  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  L  Q  I  A  E  K  A  K  S  Y  P  E  S  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  L  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  R  H  E  *  A  Y  Q  E  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  T  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  K  D  Y  L  *  *  Q  H  R  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  S  S  V  C  C  P  Y  L  V  V  M  *  W  L  Q  F  A  H  H  L  G  R  F  G  D  H  H  F  L  D  H  H  V  L  Q  N  N  G  L  C  H  D  H  L  Y  L  *  H  L  E  V  C  N  S  V  L  D  N  I  S  *  Y  V  Q  S  P  H  I  H  S  T  L  W  V  H  A  *  V  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  W  V  E  V  C  N  F  P  N  P  V  L  *  C  K  N  H  *  T  H  L  L  F  E  T  F  L  M  S  M  L  W  *  S  R  L  A  S  L  L  P  L  L  S  Q  S  L  P  L  L  G  R  I  L  P  L  P  L  P  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  T  G  E  S  A  L  E  D  *  N  R  V  E  W  H  I  W  I  V  H  E  T  *  P  H  K  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  S  G  G  Y  T  S  P  *  T  N  *  R  M  R  P  K  S  *  A  V  P  L  L  V  D  T  R  Y  V  T  A  T  T  F  W  H  S  L  E  T  D  M  S  Q  T  P  H  Q  T  V  L  L  Y  P  S  C  V  V  A  R  D  S  Q  P  E  N  H  K  H  P  P  I  Q  H  P  *  R  P  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  M  C  L  C  P  M  E  H  P  C  G  E  P  *  *  P  H  V  V  L  L  K  P  E  V  L  A  Q  K  T  L  E  V  P  D  L  D  Q  I  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  F  P  H  F  A  L  V  Q  F  P  H  P  P  L  L  L  L  L  P  R  S  V  G  E  S  L  P  *  Y  Q  M  G  *  V  L  V  L  F  L  *  R  T  S  S  H  D  L  Y  H  G  L  L  P  L  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0165I16.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50639" stop="50385"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CNGSSLPITSAVLVTTISSTTTSSRITASAMTTSTSNIWRSVTLFWTISLNMSNLPTSIALSGFMHRSLREVLTGRRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0165I16.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51806" stop="51567"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDYEEVQIWLKNPVHQAHERSRGIRKTKGHHYKFVMPIPRSKISLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0165I16.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51365" stop="51165"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRRSHFIRGYRNGASTGFKINTEVNIPIRWHTRKICREHIQKLTNYRNRLNRRYLSSVILEMCQES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0165I16.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49838" stop="49638"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVTVNQKIISILRFSTLEDRRFQFQELTEKFMLIICHYRPSSQTWKCAYVQWNIHAGSHSSRMLYF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0165I16.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49558" stop="49361"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISRVGWGGISSFCTCSVSPSSPSLITSSVGGGVTSLVSDGLGARPLPLEDVLPRPLPRSLAAAL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0165I16.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51874" stop="51677"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSKYGLKIPFIKLMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0165I16.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="7"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50329" stop="50135"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLNSPPFRNLFDVDVVVKSSGFTPSTSITKSTTSWKDFAVAATCKAEIRNSDLNPFTNRRIRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="52070" e_stop="50966"/>
            <exon e_start="50221" e_stop="50054"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.000" e_score="0.927"/>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="52070" e_stop="50966" e_length="1105"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.000">
            <gDNA_intron_boundary i_start="50965" i_stop="50222" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.923">
            <gDNA_exon_boundary e_start="50221" e_stop="50054" e_length="168"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52070" stop="51358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51498" stop="50966"/>
              <exon start="50221" stop="50054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACGAATCAGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGTCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTTAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATTACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAATCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACAGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCAGGAGCCATTTTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACCGAAACCGACTCAATCGAAGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACATCAAAATCATCCATTTCTAAG : AAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGC</gDNA_template>
            <first_frame> E  S  L  D  E  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  S  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  *  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  Y  E  E  V  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  G  H  H  Y  K  F  V  M  P  I  P  R  S  K  I  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  Q  I  E  Q  V  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  G  C  T  W  S  N  E  A  F  V  Q  *  L  L  K  L  C  L  *  L  S  *  L  R  R  S  H  F  I  R  G  Y  R  N  G  A  S  T  G  F  K  I  N  T  E  V  N  I  P  I  R  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  N  Y  R  N  R  L  N  R  R  Y  L  S  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  V  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  C  K  L  R  R  K  P  S  H  T  Q  N  H  I  K  I  I  H  F  *   : E  G  F  C  R  C  R  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  L  H  K  P  A  N  P  L  L  R  T  E  T  E  L  S  G  I  S  G  *  C  T  K  L  S  L  I  S  I  N  R  H  P  T  L  </first_frame>
            <second_frame>  N  P  L  T  N  Q  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  S  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  R  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  *  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  :  K  D  F  A  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  R  R  I  R  S  *  G  L  K  Q  S  *  V  A  Y  L  D  S  A  R  N  L  A  S  *  A  L  T  D  I  L  P  C </second_frame>
            <third_frame>   I  P  *  R  I  S  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  V  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  L  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  L  R  R  G  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  R  T  S  L  Q  I  R  N  A  H  T  S  F  E  N  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  G  M  H  L  V  *  *  S  L  C  S  I  T  L  E  V  V  P  L  T  L  L  T  P  Q  E  P  F  Y  K  G  V  *  K  W  G  E  Y  R  V  Q  D  Q  Y  R  S  Q  Y  P  Y  P  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  E  L  P  K  P  T  Q  S  K  V  L  E  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  G  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  L  Q  I  A  E  K  A  K  S  Y  P  E  S  H  Q  N  H  P  F  L  R :   R  I  L  P  L  P  L  P  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  T  G  E  S  A  L  E  D  *  N  R  V  E  W  H  I  W  I  V  H  E  T  *  P  H  K  H  *  P  T  S  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0165I16.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51806" stop="51567"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDYEEVQIWLKNPVHQAHERSRGIRKTKGHHYKFVMPIPRSKISLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0165I16.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51097" stop="50966"/>
                    <exon start="50221" stop="50135"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPSHTNGSVPGLANVTVLALQSKIANCGESQVIPRITSKSSISKKDFAVAATCKAEIRNSDLNPFTNRRIRS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0165I16.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51365" stop="51165"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRRSHFIRGYRNGASTGFKINTEVNIPIRWHTRKICREHIQKLTNYRNRLNRRYLSSVILEMCQES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0165I16.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51874" stop="51677"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSKYGLKIPFIKLMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="53551" PGL_stop="53375"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53551" e_stop="53375"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="53551" e_stop="53375" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53551" stop="53375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATATAATGCTTAAAATGGGGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCATTGACCACCAAATTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTCCTTTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  *  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  H  *  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  L  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  I  M  L  K  M  G  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  I  D  H  Q  I  L  S  H  T  H  E  A  Y  P  P  T  L  E  S  S  F  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  *  C  L  K  W  G  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  L  T  T  K  F  Y  H  T  R  T  K  H  I  L  Q  H  L  N  R  P  F  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0165I16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="53612" PGL_stop="60671"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53612" e_stop="54723"/>
            <exon e_start="55743" e_stop="55752"/>
            <exon e_start="56070" e_stop="56112"/>
            <exon e_start="58022" e_stop="58081"/>
            <exon e_start="60626" e_stop="60671"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.891" e_score="0.907"/>
          <exon-intron don_prob="0.000" acc_prob="0.757" e_score="0.700"/>
          <exon-intron don_prob="0.000" acc_prob="0.858" e_score="0.581"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.550"/>
          <exon-only e_score="0.565"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="53612" e_stop="54723" e_length="1112"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.891">
            <gDNA_intron_boundary i_start="54724" i_stop="55742" i_length="1019"/>
          </intron>
          <exon e_serial="2" e_score="0.700">
            <gDNA_exon_boundary e_start="55743" e_stop="55752" e_length="10"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.757">
            <gDNA_intron_boundary i_start="55753" i_stop="56069" i_length="317"/>
          </intron>
          <exon e_serial="3" e_score="0.581">
            <gDNA_exon_boundary e_start="56070" e_stop="56112" e_length="43"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.858">
            <gDNA_intron_boundary i_start="56113" i_stop="58021" i_length="1909"/>
          </intron>
          <exon e_serial="4" e_score="0.550">
            <gDNA_exon_boundary e_start="58022" e_stop="58081" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="58082" i_stop="60625" i_length="2544"/>
          </intron>
          <exon e_serial="5" e_score="0.565">
            <gDNA_exon_boundary e_start="60626" e_stop="60671" e_length="46"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53612" stop="54374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54329" stop="54723"/>
              <exon start="55743" stop="55752"/>
              <exon start="56070" stop="56112"/>
              <exon start="58022" stop="58081"/>
              <exon start="60626" stop="60671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346023" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGATTCGATGGAAAAAGTGAGGTCTATTCAAGAAAAGCTTCTAGCGGCGCAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAAGGTGAACAAGTCTTGTTGAAAGTTTCACCAATGAAAGGGGTGATGCGGTTTGGAAAAAGGGGTAAACTAAGTCCAAGGTACATTGGACCATTTGAAGTACTTAAGCGAGTAGGAGAGGTGGCTTATGAGTTAGCCTTGCCTCCAGGGCTGTCCGGAGTGCATCCGGTATTCCATGTGTCGATGTTGAAAAGATACCATGGGGATGGAAACTACATTATCCGTTGGGATTCAGTTTTGCTTGATGAGAACTTGTCTTATGAGGAGGAGCCTGTTGCTATTTTAGATAGAGAAGTTCGCAAGTTGAGGTCAAGAGAGATTGCATCCATCAAGGTGCAATGGAAGAATCGACCCGTTGAAGAAGCCACTTGGGAGAAGGAGGCGGATATGCGAGAAAAATACCCACATCTGTTTACAGATTCAGGTACTCCTTTTCGCCCTTGTTTTCCTTCTTTTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTGAGCAGCAGACTTCAATTCTGGAAAAACTGGCAGAAGCGACGGTCCCCACGACGGACCGTCAAGGGCACGACGGACTGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTGACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCATAGATTGTTCAGTGGAAATTGACTCTCTGACTCTTGCGACGACCTGCAGGACGGACCGTCGCAAGCACGACGACCCGTCACAGGTTGCGCAAATCCCAGGCAGAATCGGATTTCCTTACACGTTTTAAGGGACGTTTTTGGACTATTCTTTCCTTAATTATAGATTTCGTGGGGTTATATTAATAACTAAAATTCTTGAGGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGTATTATTGCCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTG : CAAACGTGCC : GTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGG : ATAATATGCCTCGTTAAAGCCTTACTAGGAAAAAATTCTAGTGAAGAAAAAAGAGTACAC : GAATTGAGTTTTTATTTTACTCAATGACCTCTAGTTTTTCTTTATG</gDNA_template>
            <first_frame> G  F  D  G  K  S  E  V  Y  S  R  K  A  S  S  G  A  K  *  T  K  R  I  C  R  S  K  G  *  R  L  R  V  H  G  R  *  T  S  L  V  E  S  F  T  N  E  R  G  D  A  V  W  K  K  G  *  T  K  S  K  V  H  W  T  I  *  S  T  *  A  S  R  R  G  G  L  *  V  S  L  A  S  R  A  V  R  S  A  S  G  I  P  C  V  D  V  E  K  I  P  W  G  W  K  L  H  Y  P  L  G  F  S  F  A  *  *  E  L  V  L  *  G  G  A  C  C  Y  F  R  *  R  S  S  Q  V  E  V  K  R  D  C  I  H  Q  G  A  M  E  E  S  T  R  *  R  S  H  L  G  E  G  G  G  Y  A  R  K  I  P  T  S  V  Y  R  F  R  Y  S  F  S  P  L  F  S  F  F  *  S  F  G  D  E  R  W  V  N  W  Y  L  L  *  R  P  V  *  S  F  *  A  A  D  F  N  S  G  K  T  G  R  S  D  G  P  H  D  G  P  S  R  A  R  R  T  V  A  G  S  R  F  K  T  L  R  K  S  E  I  G  Y  *  K  S  T  L  *  T  S  *  R  N  G  R  T  D  R  H  R  R  D  G  P  S  *  I  V  Q  W  K  L  T  L  *  L  L  R  R  P  A  G  R  T  V  A  S  T  T  T  R  H  R  L  R  K  S  Q  A  E  S  D  F  L  T  R  F  K  G  R  F  W  T  I  L  S  L  I  I  D  F  V  G  L  Y  *  *  L  K  F  L  R  G  *  K  R  *  P  *  V  N  *  W  G  I  I  A  I  F  Y  S  *  L  Y  T  N  *  G  K  R  K  R  V  C :   K  R  A  :  V  *  I  G  W  F  A  H  I  G  G  *  V  W   : D  N  M  P  R  *  S  L  T  R  K  K  F  *  *  R  K  K  S  T   : R  I  E  F  L  F  Y  S  M  T  S  S  F  S  L   </first_frame>
            <second_frame>  D  S  M  E  K  V  R  S  I  Q  E  K  L  L  A  A  Q  S  R  Q  K  E  Y  A  D  R  K  V  R  D  L  E  F  M  E  G  E  Q  V  L  L  K  V  S  P  M  K  G  V  M  R  F  G  K  R  G  K  L  S  P  R  Y  I  G  P  F  E  V  L  K  R  V  G  E  V  A  Y  E  L  A  L  P  P  G  L  S  G  V  H  P  V  F  H  V  S  M  L  K  R  Y  H  G  D  G  N  Y  I  I  R  W  D  S  V  L  L  D  E  N  L  S  Y  E  E  E  P  V  A  I  L  D  R  E  V  R  K  L  R  S  R  E  I  A  S  I  K  V  Q  W  K  N  R  P  V  E  E  A  T  W  E  K  E  A  D  M  R  E  K  Y  P  H  L  F  T  D  S  G  T  P  F  R  P  C  F  P  S  F  D  R  S  G  T  N  D  G  *  I  G  I  Y  C  N  D  L  F  S  R  F  E  Q  Q  T  S  I  L  E  K  L  A  E  A  T  V  P  T  T  D  R  Q  G  H  D  G  L  S  Q  G  L  V  S  K  H  L  E  N  L  K  L  G  T  E  N  R  L  S  E  L  R  D  G  M  A  G  R  T  V  T  G  V  T  D  R  H  R  L  F  S  G  N  *  L  S  D  S  C  D  D  L  Q  D  G  P  S  Q  A  R  R  P  V  T  G  C  A  N  P  R  Q  N  R  I  S  L  H  V  L  R  D  V  F  G  L  F  F  P  *  L  *  I  S  W  G  Y  I  N  N  *  N  S  *  G  V  K  R  G  N  P  K  L  I  S  G  V  L  L  P  S  F  I  L  N  Y  I  L  I  R  V  K  E  R  G  F   : A  N  V  P :   F  R  L  V  G  S  L  T  *  E  G  K  C  G  :  I  I  C  L  V  K  A  L  L  G  K  N  S  S  E  E  K  R  V  H  :  E  L  S  F  Y  F  T  Q  *  P  L  V  F  L  Y  </second_frame>
            <third_frame>   I  R  W  K  K  *  G  L  F  K  K  S  F  *  R  R  K  V  D  K  K  N  M  Q  I  E  R  L  E  T  *  S  S  W  K  V  N  K  S  C  *  K  F  H  Q  *  K  G  *  C  G  L  E  K  G  V  N  *  V  Q  G  T  L  D  H  L  K  Y  L  S  E  *  E  R  W  L  M  S  *  P  C  L  Q  G  C  P  E  C  I  R  Y  S  M  C  R  C  *  K  D  T  M  G  M  E  T  T  L  S  V  G  I  Q  F  C  L  M  R  T  C  L  M  R  R  S  L  L  L  F  *  I  E  K  F  A  S  *  G  Q  E  R  L  H  P  S  R  C  N  G  R  I  D  P  L  K  K  P  L  G  R  R  R  R  I  C  E  K  N  T  H  I  C  L  Q  I  Q  V  L  L  F  A  L  V  F  L  L  L  I  V  R  G  R  T  M  G  K  L  V  S  I  V  T  T  C  L  V  V  L  S  S  R  L  Q  F  W  K  N  W  Q  K  R  R  S  P  R  R  T  V  K  G  T  T  D  C  R  R  V  S  F  Q  N  T  *  K  I  *  N  W  V  L  K  I  D  S  L  N  F  V  T  E  W  Q  D  G  P  S  Q  A  *  R  T  V  I  D  C  S  V  E  I  D  S  L  T  L  A  T  T  C  R  T  D  R  R  K  H  D  D  P  S  Q  V  A  Q  I  P  G  R  I  G  F  P  Y  T  F  *  G  T  F  L  D  Y  S  F  L  N  Y  R  F  R  G  V  I  L  I  T  K  I  L  E  G  L  K  E  V  T  L  S  *  L  V  G  Y  Y  C  H  L  L  F  L  I  I  Y  *  L  G  *  K  K  E  G  L  :  Q  T  C   : R  L  D  W  L  V  R  S  H  R  R  V  S  V  G :   *  Y  A  S  L  K  P  Y  *  E  K  I  L  V  K  K  K  E  Y  T :   N  *  V  F  I  L  L  N  D  L  *  F  F  F  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0165I16.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53613" stop="54197"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSMEKVRSIQEKLLAAQSRQKEYADRKVRDLEFMEGEQVLLKVSPMKGVMRFGKRGKLSPRYIGPFEVLKRVGEVAYELALPPGLSGVHPVFHVSMLKRYHGDGNYIIRWDSVLLDENLSYEEEPVAILDREVRKLRSREIASIKVQWKNRPVEEATWEKEADMREKYPHLFTDSGTPFRPCFPSFDRSGTNDG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0165I16.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54198" stop="54449"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGIYCNDLFSRFEQQTSILEKLAEATVPTTDRQGHDGLSQGLVSKHLENLKLGTENRLSELRDGMAGRTVTGVTDRHRLFSGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="61706" PGL_stop="62489"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61706" e_stop="62489"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="61706" e_stop="62489" e_length="784"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61706" stop="62489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335445" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTGTCACGTTCCGACACAATATTCTTGGATCGGAGTGTCATGTTCTGACACAATATTCTTGGATCGGAGTGTCACGTTCCGACACGGTATTCTTGGATCGGAATGTCACTTTCCGCACGATATTCTTGGATCGGAGTGTCACGTTCCGACACGATATTCTTGGATCGGAGTGTCACGTTCCGACACGATAATATTAAAGAAAAACATGTTGAATTAATGGAAGGTACTCAAACTCAAAGAACTCAACTCCCAAAATGGTTTGGTTTGGAGGCATGAGTCCTCATGTGGGATCTTGATATCATTGACTTATTACGAGCTTACTTTGATGTTGTTGATACTTGTTCATGTTGTTTGTTGTTTATCACCTGTTAAGTGCTATAGTTGAGTTCATACTATTGTTTATTGTATATTAGTTACTATTTTGGGTTGACCGATGATACTTACTCAGTACATGTTGCCTCGTACTGAGTCCTACTTGTTTTCTTCTTTGTTTTCCTTTTATGAAATGCAGCGAGTGTACCTATGACTTCTGATTTCCCTCAGCTCTAGCTAGCCTCCCGCATATCAAGTTACAGGGTGAGCTATCCATTCAAGCTCGTGTTGGATTCTCTCGGTCATGACATGATGTCCTATACTTTCGGACACATACTATTTTATTCTTTATTTTAGTGTATTCGATATTCTTAGACTTAGTATTGGAGATTAGATGTCCTTGATGTGATGACTATCAGATTTGGGATGATAAGTATTAAACTTTAGAAACTTATTTAAATTGGTTGCTTA</gDNA_template>
            <first_frame> S  V  T  F  R  H  N  I  L  G  S  E  C  H  V  L  T  Q  Y  S  W  I  G  V  S  R  S  D  T  V  F  L  D  R  N  V  T  F  R  T  I  F  L  D  R  S  V  T  F  R  H  D  I  L  G  S  E  C  H  V  P  T  R  *  Y  *  R  K  T  C  *  I  N  G  R  Y  S  N  S  K  N  S  T  P  K  M  V  W  F  G  G  M  S  P  H  V  G  S  *  Y  H  *  L  I  T  S  L  L  *  C  C  *  Y  L  F  M  L  F  V  V  Y  H  L  L  S  A  I  V  E  F  I  L  L  F  I  V  Y  *  L  L  F  W  V  D  R  *  Y  L  L  S  T  C  C  L  V  L  S  P  T  C  F  L  L  C  F  P  F  M  K  C  S  E  C  T  Y  D  F  *  F  P  S  A  L  A  S  L  P  H  I  K  L  Q  G  E  L  S  I  Q  A  R  V  G  F  S  R  S  *  H  D  V  L  Y  F  R  T  H  T  I  L  F  F  I  L  V  Y  S  I  F  L  D  L  V  L  E  I  R  C  P  *  C  D  D  Y  Q  I  W  D  D  K  Y  *  T  L  E  T  Y  L  N  W  L  L  </first_frame>
            <second_frame>  V  S  R  S  D  T  I  F  L  D  R  S  V  M  F  *  H  N  I  L  G  S  E  C  H  V  P  T  R  Y  S  W  I  G  M  S  L  S  A  R  Y  S  W  I  G  V  S  R  S  D  T  I  F  L  D  R  S  V  T  F  R  H  D  N  I  K  E  K  H  V  E  L  M  E  G  T  Q  T  Q  R  T  Q  L  P  K  W  F  G  L  E  A  *  V  L  M  W  D  L  D  I  I  D  L  L  R  A  Y  F  D  V  V  D  T  C  S  C  C  L  L  F  I  T  C  *  V  L  *  L  S  S  Y  Y  C  L  L  Y  I  S  Y  Y  F  G  L  T  D  D  T  Y  S  V  H  V  A  S  Y  *  V  L  L  V  F  F  F  V  F  L  L  *  N  A  A  S  V  P  M  T  S  D  F  P  Q  L  *  L  A  S  R  I  S  S  Y  R  V  S  Y  P  F  K  L  V  L  D  S  L  G  H  D  M  M  S  Y  T  F  G  H  I  L  F  Y  S  L  F  *  C  I  R  Y  S  *  T  *  Y  W  R  L  D  V  L  D  V  M  T  I  R  F  G  M  I  S  I  K  L  *  K  L  I  *  I  G  C  L </second_frame>
            <third_frame>   C  H  V  P  T  Q  Y  S  W  I  G  V  S  C  S  D  T  I  F  L  D  R  S  V  T  F  R  H  G  I  L  G  S  E  C  H  F  P  H  D  I  L  G  S  E  C  H  V  P  T  R  Y  S  W  I  G  V  S  R  S  D  T  I  I  L  K  K  N  M  L  N  *  W  K  V  L  K  L  K  E  L  N  S  Q  N  G  L  V  W  R  H  E  S  S  C  G  I  L  I  S  L  T  Y  Y  E  L  T  L  M  L  L  I  L  V  H  V  V  C  C  L  S  P  V  K  C  Y  S  *  V  H  T  I  V  Y  C  I  L  V  T  I  L  G  *  P  M  I  L  T  Q  Y  M  L  P  R  T  E  S  Y  L  F  S  S  L  F  S  F  Y  E  M  Q  R  V  Y  L  *  L  L  I  S  L  S  S  S  *  P  P  A  Y  Q  V  T  G  *  A  I  H  S  S  S  C  W  I  L  S  V  M  T  *  C  P  I  L  S  D  T  Y  Y  F  I  L  Y  F  S  V  F  D  I  L  R  L  S  I  G  D  *  M  S  L  M  *  *  L  S  D  L  G  *  *  V  L  N  F  R  N  L  F  K  L  V  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0165I16.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61755" stop="61982"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HNILGSECHVPTRYSWIGMSLSARYSWIGVSRSDTIFLDRSVTFRHDNIKEKHVELMEGTQTQRTQLPKWFGLEA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0165I16.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61708" stop="61923"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CHVPTQYSWIGVSCSDTIFLDRSVTFRHGILGSECHFPHDILGSECHVPTRYSWIGVSRSDTIILKKNMLN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="76490" PGL_stop="76904"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76490" e_stop="76904"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="76490" e_stop="76904" e_length="415"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76490" stop="76904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346766" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCAATAAGTAATCCACTCTTTGTGTCAACTGCCCCGACTAACAGCATCCCGCAGCCAACGATGGTGCCCAAATCCAACAGCGATCCTCCGCCCAAAGTTCGGCGTGAGCAGAGTTACATTCTTGAAGAGACCATTAAAATTCCAAGTTCTCATCCCCACATTCATCAATATAGTTCCCCTGTTGAAATTGAGAGGATGGTCAAGAATGAGGAACATGAAGAAATGACTAAGAAAATGAAGAGTTTGGAACAGAGTATAAGAGATATGCAAGGACTAGGAGGCCACAAAGGCATCTCATTCAGTGACTTGTGTATGTTTCCTCACGTCCATTTACCTGCTGGTTTTAAAACTCCAAAGTTTGAAAAATATGATGGTCACGGAGACCCCATATCTCATCTAAAGAGATATTGCAAC</gDNA_template>
            <first_frame> C  N  K  *  S  T  L  C  V  N  C  P  D  *  Q  H  P  A  A  N  D  G  A  Q  I  Q  Q  R  S  S  A  Q  S  S  A  *  A  E  L  H  S  *  R  D  H  *  N  S  K  F  S  S  P  H  S  S  I  *  F  P  C  *  N  *  E  D  G  Q  E  *  G  T  *  R  N  D  *  E  N  E  E  F  G  T  E  Y  K  R  Y  A  R  T  R  R  P  Q  R  H  L  I  Q  *  L  V  Y  V  S  S  R  P  F  T  C  W  F  *  N  S  K  V  *  K  I  *  W  S  R  R  P  H  I  S  S  K  E  I  L  Q  </first_frame>
            <second_frame>  A  I  S  N  P  L  F  V  S  T  A  P  T  N  S  I  P  Q  P  T  M  V  P  K  S  N  S  D  P  P  P  K  V  R  R  E  Q  S  Y  I  L  E  E  T  I  K  I  P  S  S  H  P  H  I  H  Q  Y  S  S  P  V  E  I  E  R  M  V  K  N  E  E  H  E  E  M  T  K  K  M  K  S  L  E  Q  S  I  R  D  M  Q  G  L  G  G  H  K  G  I  S  F  S  D  L  C  M  F  P  H  V  H  L  P  A  G  F  K  T  P  K  F  E  K  Y  D  G  H  G  D  P  I  S  H  L  K  R  Y  C  N </second_frame>
            <third_frame>   Q  *  V  I  H  S  L  C  Q  L  P  R  L  T  A  S  R  S  Q  R  W  C  P  N  P  T  A  I  L  R  P  K  F  G  V  S  R  V  T  F  L  K  R  P  L  K  F  Q  V  L  I  P  T  F  I  N  I  V  P  L  L  K  L  R  G  W  S  R  M  R  N  M  K  K  *  L  R  K  *  R  V  W  N  R  V  *  E  I  C  K  D  *  E  A  T  K  A  S  H  S  V  T  C  V  C  F  L  T  S  I  Y  L  L  V  L  K  L  Q  S  L  K  N  M  M  V  T  E  T  P  Y  L  I  *  R  D  I  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0165I16.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76491" stop="76904"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AISNPLFVSTAPTNSIPQPTMVPKSNSDPPPKVRREQSYILEETIKIPSSHPHIHQYSSPVEIERMVKNEEHEEMTKKMKSLEQSIRDMQGLGGHKGISFSDLCMFPHVHLPAGFKTPKFEKYDGHGDPISHLKRYCN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="77117" PGL_stop="77560"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77117" e_stop="77560"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="77117" e_stop="77560" e_length="444"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77117" stop="77560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342831" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAAATTTTCGTGAATATGCTATCAGATGGAGGGAACAAGCTGCTAGGGTTAAACCACCGATGAAGGAGTCAGAGATGATTGACGTTTTTCTCCAGGCGCAAGAACCTGATTACTTTCACTATCTGCTTTCTGCCGTAGGGAAAACATTTGCTGAAGTTATTAAGGTGGGGGAAATGGTGGAAAATGGCATCAAGTCTGGAAAGATTGTAAGTCAGGCTGCCCTAAAAGCCACAACACAAGTGCTTCAAAATGGTCCTGGAAATATTGGAGGGAAGAAGAGAAGGGAGGATGTGGCCACTATTGTATCAGCGCCTAGAACTCATGTTCTAGGTAATTCCCCACAACACTATTTTCCTTTCCAAGCTCCACAATATTCTATGCCATACACTCCATATCATGTTTTTAATGCACGACCAATTGCACCCCCTTCTTATCCACAATG</gDNA_template>
            <first_frame> G  K  F  S  *  I  C  Y  Q  M  E  G  T  S  C  *  G  *  T  T  D  E  G  V  R  D  D  *  R  F  S  P  G  A  R  T  *  L  L  S  L  S  A  F  C  R  R  E  N  I  C  *  S  Y  *  G  G  G  N  G  G  K  W  H  Q  V  W  K  D  C  K  S  G  C  P  K  S  H  N  T  S  A  S  K  W  S  W  K  Y  W  R  E  E  E  K  G  G  C  G  H  Y  C  I  S  A  *  N  S  C  S  R  *  F  P  T  T  L  F  S  F  P  S  S  T  I  F  Y  A  I  H  S  I  S  C  F  *  C  T  T  N  C  T  P  F  L  S  T  M </first_frame>
            <second_frame>  E  N  F  R  E  Y  A  I  R  W  R  E  Q  A  A  R  V  K  P  P  M  K  E  S  E  M  I  D  V  F  L  Q  A  Q  E  P  D  Y  F  H  Y  L  L  S  A  V  G  K  T  F  A  E  V  I  K  V  G  E  M  V  E  N  G  I  K  S  G  K  I  V  S  Q  A  A  L  K  A  T  T  Q  V  L  Q  N  G  P  G  N  I  G  G  K  K  R  R  E  D  V  A  T  I  V  S  A  P  R  T  H  V  L  G  N  S  P  Q  H  Y  F  P  F  Q  A  P  Q  Y  S  M  P  Y  T  P  Y  H  V  F  N  A  R  P  I  A  P  P  S  Y  P  Q   </second_frame>
            <third_frame>   K  I  F  V  N  M  L  S  D  G  G  N  K  L  L  G  L  N  H  R  *  R  S  Q  R  *  L  T  F  F  S  R  R  K  N  L  I  T  F  T  I  C  F  L  P  *  G  K  H  L  L  K  L  L  R  W  G  K  W  W  K  M  A  S  S  L  E  R  L  *  V  R  L  P  *  K  P  Q  H  K  C  F  K  M  V  L  E  I  L  E  G  R  R  E  G  R  M  W  P  L  L  Y  Q  R  L  E  L  M  F  *  V  I  P  H  N  T  I  F  L  S  K  L  H  N  I  L  C  H  T  L  H  I  M  F  L  M  H  D  Q  L  H  P  L  L  I  H  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0165I16.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77118" stop="77558"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENFREYAIRWREQAARVKPPMKESEMIDVFLQAQEPDYFHYLLSAVGKTFAEVIKVGEMVENGIKSGKIVSQAALKATTQVLQNGPGNIGGKKRREDVATIVSAPRTHVLGNSPQHYFPFQAPQYSMPYTPYHVFNARPIAPPSYPQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="96146" PGL_stop="96322"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96146" e_stop="96322"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="96146" e_stop="96322" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96146" stop="96322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCGAATGGAGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACATGCACGAAGTATATCTTCCAACACTTGAATCGTTCTCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  I  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  R  K  L  S  Q  *  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  L  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  R  M  E  P  Y  Q  Y  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  G  S  Y  P  N  D  H  Q  T  L  S  H  M  H  E  V  Y  L  P  T  L  E  S  F  S  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  E  W  S  H  I  N  T  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  T  T  K  L  Y  H  T  C  T  K  Y  I  F  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0165I16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="97627" PGL_stop="98339"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97627" e_stop="98339"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="97627" e_stop="98339" e_length="713"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97627" stop="98339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTATGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAATATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACTAGTATATCACCAATAAATACGATCACGGAGAGGTCCAAATATGGCTTAAAAATCTCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACCACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGCTTTTCACTCTCTTAACTCCGCGG</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  M  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  Y  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  *  Y  I  T  N  K  Y  D  H  G  E  V  Q  I  W  L  K  N  L  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  R  H  H  H  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  K  A  F  V  *  Q  L  L  K  L  G  F  S  L  S  *  L  R   </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  C  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  S  I  S  P  I  N  T  I  T  E  R  S  K  Y  G  L  K  I  S  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  I  K  P  L  F  N  N  S  *  S  W  A  F  H  S  L  N  S  A  </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  Y  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  I  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  L  V  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  S  P  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  L  T  T  L  E  V  G  L  F  T  L  L  T  P  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0165I16.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97900" stop="98130"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YITNKYDHGEVQIWLKNLVHQAHERSRGIRKTKRHHHKFVMPIPRSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0165I16.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97823" stop="98020"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTSISPINTITERSKYGLKISFIKLMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="99080" PGL_stop="99487"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99080" e_stop="99487"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="99080" e_stop="99487" e_length="408"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99080" stop="99487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCAGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAATGTGCCTATGTCCAATGAAGAATCCATACGAGGAGCCCTAGTGGCTGCATGTTGTACTTCTGAAAGCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCAGACCTTGATCAGACAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTCTGCACTTGTTCATTTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGACGGTCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGGCCTCTT</gDNA_template>
            <first_frame> P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  R  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  M  S  N  E  E  S  I  R  G  A  L  V  A  A  C  C  T  S  E  S  G  G  V  G  A  E  N  T  G  G  A  R  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  I  S  S  F  C  T  C  S  F  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L </first_frame>
            <second_frame>  P  *  R  P  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  M  C  L  C  P  M  K  N  P  Y  E  E  P  *  W  L  H  V  V  L  L  K  A  E  V  L  A  Q  K  T  L  E  V  P  D  L  D  Q  T  T  H  *  D  R  R  E  P  D  *  S  S  L  G  *  V  G  V  A  F  P  H  S  A  L  V  H  F  P  H  P  P  L  L  L  L  P  P  Q  S  V  E  E  S  L  P  *  Y  Q  T  V  *  V  L  V  L  F  L  *  R  T  S  S  H  G  L   </second_frame>
            <third_frame>   L  E  D  R  R  F  Q  F  Q  E  L  T  E  K  F  M  Q  I  I  C  H  Y  R  P  S  S  Q  T  W  K  C  A  Y  V  Q  *  R  I  H  T  R  S  P  S  G  C  M  L  Y  F  *  K  R  R  C  W  R  R  K  H  W  R  C  Q  T  L  I  R  Q  P  T  E  I  G  E  N  L  I  D  H  L  W  G  R  L  G  W  H  F  L  I  L  H  L  F  I  F  P  I  L  P  F  S  Y  Y  L  L  S  R  W  R  S  H  C  P  S  I  R  R  S  R  C  S  S  S  S  S  R  G  R  P  P  T  A  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0165I16.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99235" stop="99486"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRRCWRRKHWRCQTLIRQPTEIGENLIDHLWGRLGWHFLILHLFIFPILPFSYYLLSRWRSHCPSIRRSRCSSSSSRGRPPTAS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0165I16.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99080" stop="99280"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLKTGGFNFKNLLKSSCRSFVIIGPVVRRGNVPMSNEESIRGALVAACCTSESGGVGAENTGGARP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="100457" PGL_stop="99507"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100457" e_stop="99507"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="100457" e_stop="99507" e_length="951"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100457" stop="99566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99792" stop="99507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATAAACTTAATTCCCAAATGAGTATGGTGTTGAGGCTTGAGCCCTCATGGATGAACTTGATGGTAATTATTGATGATTATAGTACTTGTTGTTGTTACATGTTGAGTTTTATAGTTGATTTACGATAATATTTGATATATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACTCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTACAGCAAACGTGCCGTCATCTTTGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACCTCCGGCATGGACTAACTTCTTATGTATTTTTAGCTTTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTGGTTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAAAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTCTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTATTTCGCGGATGGTTAGAACTAGAGCAACGACTGCGCCAACACCAACATCGGCAAGACAAGAAGAGTCTGAGCCAGCCCCTGGGGCTGTAG</gDNA_template>
            <first_frame> *  *  T  *  F  P  N  E  Y  G  V  E  A  *  A  L  M  D  E  L  D  G  N  Y  *  *  L  *  Y  L  L  L  L  H  V  E  F  Y  S  *  F  T  I  I  F  D  I  Y  C  S  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  S  S  C  Y  L  W  S  T  A  N  V  P  S  S  L  T  Q  Q  *  L  K  P  V  F  V  T  P  D  L  Q  G  E  L  T  L  L  A  W  T  G  S  S  P  S  C  L  D  A  L  N  L  R  H  G  L  T  S  Y  V  F  L  A  F  R  N  S  *  N  *  *  F  K  V  D  V  L  V  M  M  T  S  R  F  W  E  *  *  M  L  N  I  D  S  Y  *  I  G  F  Y  *  *  V  *  V  F  R  I  T  F  C  C  Y  Y  I  E  M  L  R  F  R  L  V  G  S  L  T  *  E  G  K  C  G  C  Q  S  R  P  G  F  G  S  *  Q  N  L  V  S  E  H  *  V  R  W  S  H  H  T  R  T  G  L  V  K  S  *  G  T  V  G  G  R  L  Y  S  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  I  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  G  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  R  Q  D  K  K  S  L  S  Q  P  L  G  L  * </first_frame>
            <second_frame>  N  K  L  N  S  Q  M  S  M  V  L  R  L  E  P  S  W  M  N  L  M  V  I  I  D  D  Y  S  T  C  C  C  Y  M  L  S  F  I  V  D  L  R  *  Y  L  I  Y  T  V  P  Y  F  E  L  A  D  D  I  Y  S  V  L  V  F  C  T  D  P  Y  F  Y  V  F  L  L  V  I  C  G  V  Q  Q  T  C  R  H  L  *  L  N  S  N  S  S  Q  S  S  S  H  R  I  F  R  V  S  *  R  F  *  L  G  L  D  L  L  L  H  V  L  M  P  *  T  S  G  M  D  *  L  L  M  Y  F  *  L  L  E  T  L  R  I  S  S  L  K  *  M  F  L  *  *  *  L  P  G  F  G  N  N  R  C  *  I  L  I  V  I  E  L  V  F  I  N  E  F  K  S  S  A  L  L  S  V  A  I  T  L  K  C  *  G  L  D  W  L  V  R  S  H  R  R  V  S  V  G  A  S  R  G  P  D  L  G  R  D  K  T  W  Y  Q  S  I  R  F  V  G  L  I  T  Q  E  Q  V  *  *  S  L  K  E  R  *  G  D  A  F  T  L  P  *  E  A  I  R  L  *  E  N  F  T  L  S  F  F  L  S  C  Y  Y  L  S  P  I  G  I  *  A  I  R  I  G  I  *  P  S  S  L  Y  F  A  D  G  *  N  *  S  N  D  C  A  N  T  N  I  G  K  T  R  R  V  *  A  S  P  W  G  C   </second_frame>
            <third_frame>   I  N  L  I  P  K  *  V  W  C  *  G  L  S  P  H  G  *  T  *  W  *  L  L  M  I  I  V  L  V  V  V  T  C  *  V  L  *  L  I  Y  D  N  I  *  Y  I  L  F  P  I  L  S  W  P  M  I  S  T  Q  Y  S  C  F  V  L  T  P  T  F  M  F  F  F  L  L  F  V  E  Y  S  K  R  A  V  I  F  D  S  T  V  T  Q  A  S  L  R  H  T  G  S  S  G  *  A  N  A  S  S  L  D  W  I  F  S  F  M  S  *  C  L  E  P  P  A  W  T  N  F  L  C  I  F  S  F  *  K  L  L  E  L  V  V  *  S  R  C  S  C  D  D  D  F  Q  V  L  G  I  I  D  V  E  Y  *  *  L  L  N  W  F  L  L  M  S  L  S  L  P  H  Y  F  L  L  L  L  H  *  N  V  K  V  *  I  G  W  F  A  H  I  G  G  *  V  W  V  P  V  A  A  R  I  W  V  V  T  K  L  G  I  R  A  L  G  S  L  V  S  S  H  K  N  R  S  S  K  V  L  R  N  G  R  G  T  P  L  L  F  L  E  R  L  *  D  F  R  K  I  S  L  F  H  S  F  F  R  A  T  T  *  V  Q  L  V  S  R  R  Y  E  L  V  S  D  H  L  H  S  I  S  R  M  V  R  T  R  A  T  T  A  P  T  P  T  S  A  R  Q  E  E  S  E  P  A  P  G  A  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0165I16.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99743" stop="99507"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYSSLRGYKTLGKFHSFILSFVLLLESNWYLGDTNWYLTIFTLFRGWLELEQRLRQHQHRQDKKSLSQPLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="105179" PGL_stop="104396"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105179" e_stop="104396"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="105179" e_stop="104396" e_length="784"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105179" stop="104396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345321" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCGTCAAATGACCAAGATGCAATGGTTGGGTGCAATACTTCGGGTGACTGATGTTTGAAATTTGCATGAAATTGACAAACATCGCATTTCCTGGCATAATATAAGCAATCTTTCACCATGGCTGGCCAGTAATACCCCATCCTCTTTTATGTGAAAGTGAAGTTTTGGTCCAGATTGATGTGATCCACATACTCCTGAGTTTGCTTCTTGCAGAGCTTGAATCGCTTCTTTATCTCCCAAACATCGTAATAACATACCCTCAAATGATCTCCTATATAATGTATCCTTGTAGTAAAGGAAATGAGGTGCACGACGACGTATGTTAGTTCTTCTTCTTGGATTTTCTGGAAGTATCCCATAACATAGGTAGTTAATGATGGGTTGTCTCCAATCTTCCTTCGCAGCTTCAACAATGGTGGCGATATGATCAAGCTTATTTTCAATATATTCTTCCTCATTTGACGGTGGTACTATCCATTTTTGATAGACAGTTACTTGTGTTTGATCAGGAAGGGTTAGCGTTGAAGCTAGAGTAGCCAATGCATCAGCTTTCTTATTCTCTGTTCAACGCACATGTTGAAGGGTTACATCTCCAAGCCATCTTATCAACTTTTGAGCATTATCATAATAAGGGCACAATTCAGGCTTTTTTACCTCATAACTTCTTAAGAGTTGATTAATCACCAATTGAGAGTCACCAAAGACCTGTAAATGTAATTGTTTCATGTCAACGACCATTTCAAGTCCAAGTATCAATGCTTGATATTCATCGACATTATTGG</gDNA_template>
            <first_frame> K  R  Q  M  T  K  M  Q  W  L  G  A  I  L  R  V  T  D  V  *  N  L  H  E  I  D  K  H  R  I  S  W  H  N  I  S  N  L  S  P  W  L  A  S  N  T  P  S  S  F  M  *  K  *  S  F  G  P  D  *  C  D  P  H  T  P  E  F  A  S  C  R  A  *  I  A  S  L  S  P  K  H  R  N  N  I  P  S  N  D  L  L  Y  N  V  S  L  *  *  R  K  *  G  A  R  R  R  M  L  V  L  L  L  G  F  S  G  S  I  P  *  H  R  *  L  M  M  G  C  L  Q  S  S  F  A  A  S  T  M  V  A  I  *  S  S  L  F  S  I  Y  S  S  S  F  D  G  G  T  I  H  F  *  *  T  V  T  C  V  *  S  G  R  V  S  V  E  A  R  V  A  N  A  S  A  F  L  F  S  V  Q  R  T  C  *  R  V  T  S  P  S  H  L  I  N  F  *  A  L  S  *  *  G  H  N  S  G  F  F  T  S  *  L  L  K  S  *  L  I  T  N  *  E  S  P  K  T  C  K  C  N  C  F  M  S  T  T  I  S  S  P  S  I  N  A  *  Y  S  S  T  L  L  </first_frame>
            <second_frame>  S  V  K  *  P  R  C  N  G  W  V  Q  Y  F  G  *  L  M  F  E  I  C  M  K  L  T  N  I  A  F  P  G  I  I  *  A  I  F  H  H  G  W  P  V  I  P  H  P  L  L  C  E  S  E  V  L  V  Q  I  D  V  I  H  I  L  L  S  L  L  L  A  E  L  E  S  L  L  Y  L  P  N  I  V  I  T  Y  P  Q  M  I  S  Y  I  M  Y  P  C  S  K  G  N  E  V  H  D  D  V  C  *  F  F  F  L  D  F  L  E  V  S  H  N  I  G  S  *  *  W  V  V  S  N  L  P  S  Q  L  Q  Q  W  W  R  Y  D  Q  A  Y  F  Q  Y  I  L  P  H  L  T  V  V  L  S  I  F  D  R  Q  L  L  V  F  D  Q  E  G  L  A  L  K  L  E  *  P  M  H  Q  L  S  Y  S  L  F  N  A  H  V  E  G  L  H  L  Q  A  I  L  S  T  F  E  H  Y  H  N  K  G  T  I  Q  A  F  L  P  H  N  F  L  R  V  D  *  S  P  I  E  S  H  Q  R  P  V  N  V  I  V  S  C  Q  R  P  F  Q  V  Q  V  S  M  L  D  I  H  R  H  Y  W </second_frame>
            <third_frame>   A  S  N  D  Q  D  A  M  V  G  C  N  T  S  G  D  *  C  L  K  F  A  *  N  *  Q  T  S  H  F  L  A  *  Y  K  Q  S  F  T  M  A  G  Q  *  Y  P  I  L  F  Y  V  K  V  K  F  W  S  R  L  M  *  S  T  Y  S  *  V  C  F  L  Q  S  L  N  R  F  F  I  S  Q  T  S  *  *  H  T  L  K  *  S  P  I  *  C  I  L  V  V  K  E  M  R  C  T  T  T  Y  V  S  S  S  S  W  I  F  W  K  Y  P  I  T  *  V  V  N  D  G  L  S  P  I  F  L  R  S  F  N  N  G  G  D  M  I  K  L  I  F  N  I  F  F  L  I  *  R  W  Y  Y  P  F  L  I  D  S  Y  L  C  L  I  R  K  G  *  R  *  S  *  S  S  Q  C  I  S  F  L  I  L  C  S  T  H  M  L  K  G  Y  I  S  K  P  S  Y  Q  L  L  S  I  I  I  I  R  A  Q  F  R  L  F  Y  L  I  T  S  *  E  L  I  N  H  Q  L  R  V  T  K  D  L  *  M  *  L  F  H  V  N  D  H  F  K  S  K  Y  Q  C  L  I  F  I  D  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0165I16.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105073" stop="104852"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIFHHGWPVIPHPLLCESEVLVQIDVIHILLSLLLAELESLLYLPNIVITYPQMISYIMYPCSKGNEVHDDVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 85 chains have been computed
$ 
$ memory statistics:
$ 150416 bytes spliced alignments in total
$ 26 spliced alignments have been stored
$ 5785 bytes was the average size of a spliced alignment
$ 24912 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1465 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 116 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-10 08:36:37
-->
