<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-22 16:53:32"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E709904" ref_strand="+" ref_description="SGN-E709904 [FA53CD10]">
      <seq>cgataaaaaaaaagaagagagaatatgaacttgtctcttcttcttgaagttatttttctttgctttgcttctccttcactatcagtaagatgcaatccgaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaaaaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttaaatcgtaacaaactcaccggaacaataccggaatcgtttgggagatttaaaggaccaaatataccaaatctctacctttcacacaacagcttgaccggacatgtgccggcatctttaggtgatttgaatttttccacgcttgatttctccaggaataagcttgaaggagatgtttcgtttttgttcgggaagaataaaacgagtcagggaattgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="990" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="690" g_stop="1" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="690" r_length="690" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E709904" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="690" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAAAAAAAAGAAGAGAGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAAT</genome_strand>
        <mrna_strand>CGATAAAAAAAAAGAAGAGAGAATATGAACTTGTCTCTTCTTCTTGAAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAAAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAAATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAAATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E270929" ref_strand="+" ref_description="SGN-E270929 [cLEM-6-H18]">
      <seq>aaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttagatcgtaacaaactcaccggaacaataccggaatcgtttgggagatttaaaggaccaaatataccagatctctacctttcacacaacagcttgaccggacatgtgccggcatctttaggtgatttgaatttttccacgcttgatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="820" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="520" g_stop="9" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E270929" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="520" e_stop="9"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCT</genome_strand>
        <mrna_strand>AAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E329265" ref_strand="+" ref_description="SGN-E329265 [cTOD-2-H2]">
      <seq>gaatatgaacttgtctcttcttcttgtagttatttttcgttgctgggcttctccttcactatcagtaagatgcaatccgaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaagctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttagatcgtaacaaactcaccggaacaataccggaatcgtttgggagatttaaaggaccaaatataccagatctctacctttcacacaacagcttgaccggacatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="970" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="670" g_stop="52" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E329265" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="670" e_stop="52"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTG</genome_strand>
        <mrna_strand>GAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCGTTGCTGGGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAAGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E326870" ref_strand="+" ref_description="SGN-E326870 [cTOC-25-G16]">
      <seq>gaatatgaacttgtctcttcttcttgtagttatttttctttgctttgcttctccttcactatcagtaagatgcaatccgaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttagatcgtaacaaactcaccggaacaataccggaatcgtttgggagatttaaaggaccaaatataccagatctctacctttcacacaacagcttgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="970" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="670" g_stop="61" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E326870" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="670" e_stop="61"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACC</genome_strand>
        <mrna_strand>GAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E325377" ref_strand="+" ref_description="SGN-E325377 [cTOC-1-I7]">
      <seq>tcttcttgtagttatttttctttgctttgcttctccttcactatcagtaagatgcaatccgaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttagatcgtaacaaactcaccggaacaataccggaatcgtttgggagatttaaaggaccaaatatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="952" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="652" g_stop="92" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E325377" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="652" e_stop="92"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACC</genome_strand>
        <mrna_strand>TCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E324027" ref_strand="+" ref_description="SGN-E324027 [cTOC-3-C9]">
      <seq>aaaaaaaagaagagagaatatgaacttgtctcttcttcttgtagttatttttctttgctttgcttctccttcactatcagtaagatgcaatccgaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttagatcgtaacaaactcaccggaacaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="985" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="685" g_stop="129" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E324027" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="685" e_stop="129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAGAAGAGAGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATAC</genome_strand>
        <mrna_strand>AAAAAAAAGAAGAGAGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E337233" ref_strand="+" ref_description="SGN-E337233 [cTOE-7-C12]">
      <seq>agaatatgaacttgtctcttcttcttgtagttatttttctttgctttgcttctccttcactatcagtaagatgcaatccgaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttagatcgtaacaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="971" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="671" g_stop="144" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E337233" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="671" e_stop="144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAAC</genome_strand>
        <mrna_strand>AGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E325882" ref_strand="+" ref_description="SGN-E325882 [cTOC-12-C9]">
      <seq>aaaaaagaagagagaatatgaacttgtctcttcttcttgtagttatttttctttgctttgcttctccttcactatcagtaagatgcaatccgaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="983" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="683" g_stop="161" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E325882" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="683" e_stop="161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGAAGAGAGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTA</genome_strand>
        <mrna_strand>AAAAAAGAAGAGAGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E319323" ref_strand="+" ref_description="SGN-E319323 [cTOB-16-P12]">
      <seq>gaatatgaacttgtctcttcttcttgtagttatttttctttgctttgcttctccttcactatcagtaagatgcaatccgaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacaaagatggctgttactggtccgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="970" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="670" g_stop="203" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E319323" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="670" e_stop="203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAAT</genome_strand>
        <mrna_strand>GAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACAAAGATGGCTGTTACTGGTCCGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E268379" ref_strand="+" ref_description="SGN-E268379 [cLEI-13-I16]">
      <seq>gtctgttcttcttgtaattatttctctttgctttgcgtctccttcactatcagtaggatgcaatccgtaagacaaaaaagtccttctacaaataaagaaagactgaggcaatccttaccatttagctttatgggatccaaacacagattgctgctactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttgcaagccaatatctccggccaaattccggcagccgccggagaccttccatatctcgaaacattggaatttcatcatgtgactaatctcaccggaacaatttcacctgcaattgcgaagctcacaaatgtcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatctgacgttgctcgagttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="958" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="658" g_stop="227" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E268379" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="658" e_stop="227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAA</genome_strand>
        <mrna_strand>GTCTGTTCTTCTTGTAATTATTTCTCTTTGCTTTGCGTCTCCTTCACTATCAGTAGGATGCAATCCGTAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTGAGGCAATCCTTACCATTTAGCTTTATGGGATCCAAACACAGATTGCTGCTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTGCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGCCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTGACTAATCTCACCGGAACAATTTCACCTGCAATTGCGAAGCTCACAAATGTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATCTGACGTTGCTCGAGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E352019" ref_strand="+" ref_description="SGN-E352019 [cTOS-13-I12]">
      <seq>caaaatggctaaatcatatagtacaatgatttttttgctttttgcactgattatcacagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacatttttttttttttatgtgcgtttgtaatttctggtatttgagaatttaaataaactttctttgagttgttggggttcggttattcgttaatgtattttttcttacacgcaccaactataataattgtgcctcgatccctagtaagttgggaatgttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="7847" stop="9071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8147" g_stop="8774" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E352019" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8147" e_stop="8774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACA-TTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGGGTTCGGTTATTCGTTAATGTATTTTTTCTTACACGCACCAACTATAATAATTGTGCCTCGATCCCTAGTAAGTTGGGAATGTTAGGG</genome_strand>
        <mrna_strand>CAAAATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGGGTTCGGTTATTCGTTAATGTATTTTTTCTTACACGCACCAACTATAATAATTGTGCCTCGATCCCTAGTAAGTTGGGAATGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E349642" ref_strand="+" ref_description="SGN-E349642 [cTOS-3-A11]">
      <seq>aaaatggctaaatcatatagtacaatgatttttttgctttttgcactgattatcacagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgagaatttaaataaactttctttgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="7848" stop="8978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8148" g_stop="8678" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="532" polyA_stop="543"/>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E349642" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8148" e_stop="8678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGA</genome_strand>
        <mrna_strand>AAAATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E351517" ref_strand="+" ref_description="SGN-E351517 [cTOS-12-O1]">
      <seq>aaaatggctaaatcatatagtacaatgatttttttgctttttgcactgattatcacagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaaagttgacatttttttttttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="7848" stop="8929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8148" g_stop="8629" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E351517" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8148" e_stop="8629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTAT</genome_strand>
        <mrna_strand>AAAATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAAGTTGACA-TTTTTTTTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E357041" ref_strand="+" ref_description="SGN-E357041 [cTOS-22-G20]">
      <seq>atggctaaatcatatagtacaatgatttttttgctttttgcactgattatcacagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgagaatttaaataaactttctttgagttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="7851" stop="8981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8151" g_stop="8681" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="532" polyA_stop="541"/>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E357041" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8151" e_stop="8681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTT</genome_strand>
        <mrna_strand>ATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E356545" ref_strand="+" ref_description="SGN-E356545 [cTOS-21-E2]">
      <seq>atggctaaatcatatagtacaatgatttttttgctttttgcactgattatcacagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctatagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaatttgttcgcttcactttgtgaagtttgacattttttttttttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="7851" stop="8929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8151" g_stop="8629" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E356545" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8151" e_stop="8629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTAT</genome_strand>
        <mrna_strand>ATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTATAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTTGTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E351656" ref_strand="+" ref_description="SGN-E351656 [cTOS-8-I7]">
      <seq>atggctaaatcatatagtacaatgatttttttgctttttgcactgattatcacagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaagggtcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggaatttaatgcgtatgctaaagaaatggtgggactaattaagaaaaaagaacatgtatttttacctgaatttgttttgaattggttcgcctcactttgtgaagattgacatttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="7851" stop="8927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8151" g_stop="8627" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E351656" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8151" e_stop="8627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTT</genome_strand>
        <mrna_strand>ATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGGTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGAATTTAATGCGTATGCTAAAGAAATGGTGGGACTAATTAAGAAAAAAGAACATGTATTTTTACCTGAATTTGTTTTGAATTGGTTCGCCTCACTTTGTGAAGATTGACATTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E354271" ref_strand="+" ref_description="SGN-E354271 [cTOS-16-L17]">
      <seq>tggctaaatcatatagtacaatgatttttttgctttttgcactgattatcacagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgagaatttaaataaactttctttgagttgttggggttcggttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="7852" stop="8996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8152" g_stop="8695" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="545" polyA_stop="557"/>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E354271" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8152" e_stop="8695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGGGTTCGGTT</genome_strand>
        <mrna_strand>TGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGGGTTCGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E352263" ref_strand="+" ref_description="SGN-E352263 [cTOS-13-H16]">
      <seq>gctaaatcatatagtacaatgatttttttgctttttgcactgattatcacagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgagaatttaaataaactttctttgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="7854" stop="8978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8154" g_stop="8681" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E352263" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8154" e_stop="8681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTT</genome_strand>
        <mrna_strand>GCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E354135" ref_strand="+" ref_description="SGN-E354135 [cTOS-16-F16]">
      <seq>taaatcatatagtacaatgatttttttgctttttgcactgattatcacagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacatttttttttttatgtgcgtttgtaatttctggtatttgagaatttaaataaactttctttgagttgttggggttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="7856" stop="8990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8156" g_stop="8687" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="535" polyA_stop="546"/>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E354135" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8156" e_stop="8687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGG</genome_strand>
        <mrna_strand>TAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACA-TTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E349272" ref_strand="+" ref_description="SGN-E349272 [cTOS-2-D14]">
      <seq>taaatcatatagtacaatgatttttttgctttttgcactgattatcacagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgagaatttaaataaactttctttgagttgttggggttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="7856" stop="8990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8156" g_stop="8687" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="536" polyA_stop="547"/>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E349272" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8156" e_stop="8687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGG</genome_strand>
        <mrna_strand>TAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E578868" ref_strand="+" ref_description="SGN-E578868 [85990]">
      <seq>gtacaatgatctttttgctttttgcactgattataacagtacaaattgtaacatcaaatgctgcagaaacaccagaaactatttgcaaggtcacaatcaatgagcttgtactatgtttacctgcagtaatggggaagaaacctccgaaaccgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="7867" stop="8621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8167" g_stop="8321" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E578868" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>155</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8167" e_stop="8321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACG</genome_strand>
        <mrna_strand>GTACAATGATCTTTTTGCTTTTTGCACTGATTATAACAGTACAAATTGTAACATCAAATGCTGCAGAAACACCAGAAACTATTTGCAAGGTCACAATCAATGAGCTTGTACTATGTTTACCTGCAGTAATGGGGAAGAAACCTCCGAAACCGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E213293" ref_strand="-" ref_description="SGN-E213293 [cLEC-71-G12]">
      <seq>tttttttgctttttgcactgattatcacagttcaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgagaatttaaataaactttctttgaaaaaaaaaaaaaaaaaactggagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="7876" stop="8978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8176" g_stop="8678" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="504" polyA_stop="521"/>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E213293" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213293" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="8176" e_stop="8678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGA</genome_strand>
        <mrna_strand>TTTTTTTGCTTTTTGCACTGATTATCACAGTTCAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E341926" ref_strand="+" ref_description="SGN-E341926 [cTOF-9-J13]">
      <seq>ttttttgccttttgcaccgactctcacagtacaaattgcaaccaataaatgcctgcagaaacaccagaagttacttgcaaggtcacaatcaatgaccttatgctatgtttaccctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgagaatttaaataaactttctttgagttgttgggggttccggttnnaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="7877" stop="8995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8177" g_stop="8687" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="527" polyA_stop="545"/>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E341926" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8177" e_stop="8687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAA-CAATAAATG-CTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTA-CCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGG</genome_strand>
        <mrna_strand>TTTTTTGCCTTTTGCACCGACTCTCACAGTACAAATTGCAACCAATAAATGCCTGCAGAAACACCAGAAGTTACTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E350476" ref_strand="+" ref_description="SGN-E350476 [cTOS-5-C5]">
      <seq>acagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgagaatttaaataaactttctttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="7902" stop="8978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8202" g_stop="8679" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E350476" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8202" e_stop="8679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAG</genome_strand>
        <mrna_strand>ACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E353813" ref_strand="+" ref_description="SGN-E353813 [cTOS-10-I6]">
      <seq>acagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgtttttgattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctgggtattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="7902" stop="8952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8202" g_stop="8654" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E353813" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8202" e_stop="8654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTG</genome_strand>
        <mrna_strand>ACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTTGATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGGTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E722721" ref_strand="+" ref_description="SGN-E722721 [FC18AD12]">
      <seq>gggcgattggcggccaatcggccgaattggcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgggcgtttgaaatttcgggtatttgaaaatttaaataaactttctttgagttgttggggttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="7947" stop="35206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8256" g_stop="8690" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="469" r_length="435" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8691" i_stop="12017" i_length="3327">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.005" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12018" g_stop="12073" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="525" r_length="56" r_score="0.643"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E722721" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8256" e_stop="8690"/>
          <exon e_start="12018" e_stop="12073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGGGTTCGGTTATTCGTTAATGTATTTTTTCTTACACGCACCAACTATAATAATTGTGCCTCGATCCCTAGTAAGTTGGGAATGTTAGGGATTTATGGGTTCGGACGAATTCACTGGCTTTTTCGTATAGATCCTATGTTGAGTTAGAAAATTATTTTTTTTAAATGTATATTAACTTATGAACCTTAAATAAATCAATTTAGATTCTTCAAACTCTTAATCTTGACTCCGACAACTATATGATTCTCATTGTCAGTTAAGCTTGTCTTGAGTTTCTACATCTGCTATTTAGAAATGATATAGTCTCTTTATATAGTATGGACTGTTACGTTGTGGAGCTTGATTAATATTTGATGTACTGTCATATATTAATGTTCATATATTTATTCTCCATTTATTCTCTGTAACCTAAAATACTCTCATTTATTAATATATATATCCACCGCCGTGGAAGTTTACTCACGGAGTGTTACCACGAAACATTGATTTCTCTCTTTCTCTCTCATCTCTTTCTCTCTAAAGTTCTTGTGTTCTTCATTCGTTAAGTGTGTGGGGAATTCGATCCTAACATGGACAATCATTATCTTAAGAGCTCGTTCTTGAGATTGAGTTGAATTAAATTTTTAATTTCTTTATCAATTTCGATCTTATATAACAAAGTATGTTGTATAGTGTGGAAACATCATGAAAAAGTACGTTGTATAGGTGATGCTTCATCGCAAATTGACTAATTTTATACGAACCGATAAGGCGATTACCGTGTGTATATCCTCTTTTATTCAAGCTGAAGATCGGTAATATGAGCCTTGTTTGTTGACATTGAATCGTCATTCAAATGGAAGCCCAACTCATCATGGGCCCAATGGGCTTTATGAGAAGTTGAAAACCCACTTTGAAAATTGATAAAACTATTAGAACATGTAGGAAAAATAACTTAAATACACAACTATAATTTTTATATTCTCCAATTTTTCCTACTTTTTTTAAATATTACATAATTTTCTTTTTTTTTATTTTATTGTAAGTTTTTAGATACATTACATTCTCTCTCTTATAATACACATTTACCCATTTTAATGCCTATTTTTTCTCCATTAAAACACTCAACCTCTTAAATCAGTTTTTTAATTTTAAATTTTATCCATTTAAACACTCAACTTTTTAATCAGCTTTTTGATTTTGAATTTTTAAATTTTTAAATTTAATTAATTTTAATTAAAAGACCAAATTTTGAAATTTTGAATTTCAAAATTTGAAAAATTTGAAAATTAAAAAAGTAAAAATATTAGGAAGCAGGACAACTTCCATTAACTTCTACCGTCTTCTTCTTACTCCATCAAGTTTCAGTTCTTTTTTTTTCCTTAATCATCTTCATTCATCTTAATCCATTACATTTTTTTCTTTTCTTCTTTTTATTCTTAATCCATCATCGTCTATTTCTTCCTAATCTGTAATAGTTTGAACCCAGCATCTTTTTATTATTAATCCATCATCAATTCGTATATTCTTCTCTTTTTTATTTTTGTTAATTGTTCTATTACATCATAGTAATGGATCCGTTAATTAATAGAAGGATATATGATTCCGACGATGAAAATTGGAAAGAAAATAGAAAAAAGTCTTTGCATGATTCTATGAATCTTCAGAAGGATTCAAACGAAAACTCTGGCGAAACATCGAATCAAAGGTTGTCAAAATACAACAAAAAAAGGAAAAAAGAAGCAACAAACATTATTGTTAAGCCTACCTTGTCTCGGGTTAGTATTTTGGCAAAACGAAATGATACATATATATCAAACACACACTAAAAATAACTGATACATTGGCTAAACCGTATGTATCATGTACAATATGTTACCCTATAATCCTTAAATTTTACATGATATTTAGGTAATTGAATAGCATATTCATATGAATTGGTATTATTTTTTAAAAGTAAAGTTATTTACTGTATATTTCAAGAAAAGCATAACAAAAAAAGCATTACACAAGTTAAATTATATAAATTCACATCATACATGATTTATAGTCATTGTAAAGTACACAATAACCTCAATAATATTTTTGTATTTTTTATCTAATGGAGATGTATCATTGTGCAAACCAATGATACACACTAAAAAGTACATGATACATTAGATAAACAATGTGTACCAAAAACACACAATAAAAGTACATGATACACTAGATAAACCATATGTATCATGTACATTATGTTACCTAATGATTCTTAAATTTATGTATCTTACTGTAGCATAAGATTTATAAAATTTTATATTTAAAACAAATATTGACACAAGTATATTTATCAACACCAATAATAACAAAGTATTTATAATCAAAAGCACGACTTCAATATTTAATTACCACATGTTTGTAAGTTTATTTATCTAAACACAAAGTGTTCAATTTGCAGTTGTAATGAAAACTGAAATTCATTAAAATGTTTACGTTATAAATTATTCTTGATATCATAGAAACATTACGACTAATTCACTTCTCTTTTGGGTAGAAAGTACAAGTTCTTCTGTTGTGCCCTTCTTGTCCACATTGTCCACAACAGTTTGTGTTCAAAATCTTTTCATTTGCATTCTTTCTTCTTCTTTTTCTTGGTCGTCCAGATGATATAATCTTTGATATTTAGGTAAATTGAATAGCATATTCAAAATAGATGATATAATCTTTGATTTTCAAATTTTAAAATTAATATCCAATTAAGTGCTGATTTAATGCAAATTAATGATCTGTTACCACAAATTAAGCTGTTTTAGTAACAACATTAACTTTACCGTTTTTCTCCCCTATTTTTTCTTAACAGTTTTAAATTACCATGTATCACTACAGTCTAAAGTATCACGGCTCAACAAATTTAAGAGATTTTTTGTAATTAGTAAACTTATCGGGACAGAATGTAATTATTGAATTACACTATGGGATTCCTTATATTTATACGAACATATATTATTGGCTGATTTATGCAAATATTCCTTTTATACCCCTTTAGATTTTATTCTTATTTAAAAAAAATTCCAGTATATAACCTTCGAGATCGACAAAACATTATATTATCGTCTAACATTTTAAAAAAATTCAGAATATCATCTAACGTTTTCTCATAGAATTTTCAATTTAAGCAAATAAAATTCTTATGTCAATAGACTAAATAGCCGTCCAAAAAAGCGAAAATTTTGTCTACTATTTTAAACGTTCATTTAAAACTTGACTTTAGAACGAATATTCCAAAATCAAGAAGTCAAGTCTTCATTGGTATTATATGGTAGTATTTATTATATAGTAGTAATTAAATTATAGTGAATATGATTTGACCAATAGAAAAAAAAAACAAGAGATACAATAATACTAGGAAGTAATTGACAAGATAACAAAAA</genome_strand>
        <mrna_strand>GTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGGGCGTTTGAAATTTCGGGTATTTGAAAATTTAAATAAACTTTCTTTGAGTTGTTGGGGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E552293" ref_strand="+" ref_description="SGN-E552293 [cTSB-3-H16]">
      <seq>acaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgaaaatttaaataaactttctttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="7959" stop="8978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8259" g_stop="8678" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E552293" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8259" e_stop="8678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGA</genome_strand>
        <mrna_strand>ACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAAAATTTAAATAAACTTTCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E715121" ref_strand="+" ref_description="SGN-E715121 [FB13BF05]">
      <seq>aatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgaaatttctggtatttgaaaatttaaataaactttctttgagttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="7961" stop="8982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8261" g_stop="8681" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="423" polyA_stop="432"/>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E715121" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8261" e_stop="8681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTT</genome_strand>
        <mrna_strand>AATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGAAATTTCTGGTATTTGAAAATTTAAATAAACTTTCTTTGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E553151" ref_strand="-" ref_description="SGN-E553151 [cTSB-1-P15]">
      <seq>ctttttttttaaaaagggccccccaaattttatttaactcccctttagggggaaagggggccccccccccccccccaagtttttttttttttttttttttttttttttttttttttttttttttttttactcaaagaaagtttatttaaattttcaaataccagaaattacaaacgcacataaaaaaaaaaaatgtcaaacttcacaaagtgaagcgaaacaattcaaaacaaaatcaggtaaaaatacatgctcttttttcttaattagtcccaacacttctctagcatacgcactaaaatcccacaagtagaaattggagagaatagagtgtacgcagatgttaacatccatcgggaaccttaattttacattgcttaggcagattcattgcagcttcaggactgattccaaatttccccaactcagatttctggttgcacatacactgtaaatcagccttgcgtagcactgcgcaacaatccggcgtcggtttcggaggtctcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="35208" stop="8000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16198" g_stop="16184" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16183" i_stop="15642" i_length="542">
            <donor d_prob="0.128" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15641" g_stop="15619" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="36" r_length="22" r_score="0.652"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15618" i_stop="14916" i_length="703">
            <donor d_prob="0.333" d_score="0.00"/>
            <acceptor a_prob="0.678" a_score="0.36"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14915" g_stop="14852" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="100" r_length="64" r_score="0.469"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14851" i_stop="12959" i_length="1893">
            <donor d_prob="0.000" d_score="0.56"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12958" g_stop="12930" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="129" r_length="29" r_score="0.862"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12929" i_stop="8680" i_length="4250">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8679" g_stop="8300" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="509" r_length="380" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E553151" ref_strand="-">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553151" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16198" e_stop="16184"/>
          <exon e_start="15641" e_stop="15619"/>
          <exon e_start="14915" e_stop="14852"/>
          <exon e_start="12958" e_stop="12930"/>
          <exon e_start="8679" e_stop="8300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTATTCTTAAAAGTAAACTAACAACTTACACTCATATTCTCTAAATATACAATATATGTTCTACTTCTTAATACTATAATATAAAGTGATCAATTTATAATTAAGATGAACATGTAGTGTCAACATCATCCATAATAAGCAAATAAACTTTAAATATCTTTAATGAAAGTTTGCACCACATTTGCCATACCAAGTGATTATGATTTATGATCCAAAGGCAAAAGTACTACCACTACTAGCTACTCTAAAAGGGGAAAAAAATGCTTACTATATATATGCCTTTACAAACTTCAATGATTCAAGTATTTATATAATATGTGAATGAAGAGTTCCATTGTAATTTTTTTTTGTTTACTATCCCGTCTTCGATATTCTGGAGTTTGCTTAAAGAAATTTCACTTTAAAAAATAAATATTTTTTATTAGAAAAAGATAAACTAATCAATTATTTAAATAGTCATCAAACTTATAGCTTTTTTATTATCTTAGCTATTTAATTTTTTTTTTATCATTATAAACTACTCGATTTATAGGTTGTTTTTTCAAAAAAATAAGTGTGATCCCAAAAATTGATCTTAGCTAGTGTAAGTTTCAAACTTCGGATTTGAATATAAAAAATTAATGAGAATTAAGAATAAAACAAAATAAAATAGAGTTGACCAATTATTATTCAACATTACCATGGATGCTCATCGTAATCCTTTTTTTAAAAAAAGTGTTTCATCTAACTTCTCTAGATAAAAATAATAAATAAGTTTTGAGAATTATTTTTTGTGGTTATTGAATAAGCAATGGTCGGTCAGAAGACTCAACTTTGTATTATTTTTTTAAAAATAAAAAATGAATATTGTTGACGGGTACAACGGTTGGTGAGTAGATTTTGCACAAAATATTATGAATTCATCACTTTATTAATCTAAACCATAGATATATAATATCACATAATATTTTAAAATATGATTATTATTAATGGATGGAGCATAAAGTTATATTCTAATTCTATCTAATTACGTGCATAGTATTTTGTACAAATGACATAGTGGGCACCAAGTCACTTATAAACATAAAATTAAAATACTAAAGATTATGCACCAATATCGACAAGTCCAGTTAAGATGTTTTTGTAAAAAAAAAAAAAAGAGAGAGAGGATATTTTAGTTCTAATAATAATTTATGTCTATTAGTACAAAACAAAATATTTGAAAAAATGCATGTGGACAATAGTTAAAATAAATTGGTGAACTCGAGACAAATCTAACGAATTTTTGTAAAATTTTGTAGTTTAATTAATCTATGGACTTGGAAACTGGACTAGATACACAAGTGATTTATTTGATTTTTTTTTAATTATATAAATTTTTATTAGTAAATATTGAATTTGTTTAATTTATTTATAAAAAAATAATTAAAAAATTTCTGACTCGATCATGATATTTTTGCAATTGGCAAGGTTGTTGGATTTAGGAAGTCGGAAACACTTGTCTCTTATGGATTAGCATATCTTAGTAGTTATTAGTGGTAAATATGTTCTTTATTCAATTTACAGTCAAACAAGAGTTTGAATCAAAGTAAATAATTAGTTATCTTAATCTCTATTTAATAAAAAAATGTTCTGAAACAAAACTCTTAGCTAGCGTTTGGCCATAGATTTTCAAATATTCTTGGCAAATATTATTTGAGTGAAAATTTGGGTGAAATTTCACCATGTGTTTGGCCATAAAATTTGGGAAATATATTTCACCTTTTTAGAAAAATATGATTTATACACACAAGTTTTAAAAACTATCAAAACTAACTAAAAGTTTGTATTACAAGTCAATTGAATGTTAGTTACAATAATAACAAATAATGTCCATGACACTGAAGCAATGTGGTAATTTGGAGTGAGTGCAACAAGAATTATTCTATACATCGTGAAGTAGATAAAGTACATGACTTTGTTACCTAGAGCCAATTTTTAATAATTTTCATCAACAATCATATCATTATTTAATATTCACTAAATATTTCACCACTATTTTGGTGTTCACGTAAAAAAATGATGTAATACAACGCAAGCAACTACTAGAGAGGGTGTTTTTGTAAAAAATAAAAGATTGAGGTAAAATTTTTATTTTTAAAATATCCCAAATAATGGTATTTGGCCCAAATACTAGAAAAAACTAGTATTTGGAAATTTGGGATATTTGCCAAAAATATTTGCCAAATAATGACAAATTGTATGGACAAACATTATTTTGCCAAATTTTTCCCAAATATTATTTGGAAAATTTATGGCCAAACGGGCCTTAAAATAGTCATTTTAGCATTGTCTTGAACCTTATTATATAATTCTCTATAAATAATAATAATAAATTTTTTTTTAGAAAAATCGATACCTTATGCTAAATATGTCACTAATTCTAATTAACAACACACTAGCTAGCAACGAATTAGCTAGTGATAAATTCTAATTACTATCTGAATTATAGTGAGCATATTATTATTATTATAAAGTAAAAGTATTGAAAGTATTTTAAGGATTTCAGATTCGAACCTTAGGTATGGAGAAAAATGATTAAAACCTTCATTTTTGAATAAGTCAAGCAATGTGCGACCTAAATTCAATTAGAGTTTCAATATAAATACCAAACCCCGATAAAAATATGATGCAAGAGCTTATCTCATATTATACATTAAATTCGAAAACCATAAAATCATATTATATGTTTATTAACTTAATTATAAGTAGTTACAATGACACTAAAATAAAAAAATGTCACAAAATTAATTTATTTTATAAGAAAGTTCCTAGGTGGGAACTAATAAGGCATATGGCCGCACATGGCCACGAATTAGCAAATTGGAGAGACGGCTCTCTAATAATTGAATAAAATTTACAAATTAAACTTTTAAATCATTATAATCGAAAAATAGTCATTGTTATCATGTTTTATTAGTAAAATTTAAAACTCTACGATATTAATTATTATTTTTTAAGAAAAAGACTGAAAAGTGACGTGAACAATATTTCTACATAATATATGTACGTTTTTGTGTATTTCTTTTTATTGAGTCCAAAGACTTGATCAAGATATATATATTATCACTAGCAAAGTAACAAATGTATTGTTGGATACAAAATAAGAATTAAATACAGATCGACAATTGCATAACGCGTATAACTTATATCTTGTTATTTTAGATATTTCATTTCTTATTATAAAAATCCTAAGAGAGTAATCAGATAAAATTAAATTTTTGTTTTTATTTTTGTTTTTGTTTTTAATCAAATATTCGATATTTATTTTAAATTTTTTGATTAACTTTTTAAATGCGTGCTTTCTGAAAGAAAATTTTCAAAATTGAAACTCAACTAAACTAAATTAAATAGGAAAGTCTCTTAAAAAGTCTACAAAAATTAAATATATGAAAGTTAAGTTTAAGAAAAATTTTATTATTATGAGGTCTCATTAACTAATTAAAAGTCTACTTTATTGTTTCTTTATGAAAATTATGAAACGAAATTCTTAAAGTGAAGTTGTCACTTTTTCGGTCAATCTCGCTAAACAAAAGAATCAACTGCTTCTTTTGTCCCTTTTAGCATGTTACAATTTAAATATAATAAATTTAATAAATTATAATATTAGGAGCTAAGTGATAAATTATCTTTTAATATTTTAATCTGAACAAATAAAAAATATATATATATATAGAGAGAGAGAGAATTGTGCATTAAATCCAATCCCCAATTTTGATCTTTCCAAATCCAAACCAAAAAAAAAAGGCCCAAAAATTTTTGAACATCAAGTTGCCGTTAGAATATATCACTAATATAATCGCACCGAATTGTAGTGAAATGAATAAAATTTTTCATTTTTAATAATAAATCTCAAGATTAAGTTTGAGCATTAAAAATATTTCAATAGAACACGTTATTTTTTTAAATAAGTCTTACATGATACAAATTTAAATTAGTGGAAACTCAAAACAGATATCAAATATCGAACTGAAACGAAAGAAAAGGTCATATCAACAGTACGCGTTTGTGTGGCCTTAAGAATTGTTTAAAAAAAAAAAGACGTTGTAGTTGTTTGCACGATGATGTAATTTATTACACATTCAATTTATGCCTTTTGCAACTTTTTTGTTATCTTGTCAATTACTTCCTAGTATTATTGTATCTCTTGTTTTTTTTTTCTATTGGTCAAATCATATTCACTATAATTTAATTACTACTATATAATAAATACTACCATATAATACCAATGAAGACTTGACTTCTTGATTTTGGAATATTCGTTCTAAAGTCAAGTTTTAAATGAACGTTTAAAATAGTAGACAAAATTTTCGCTTTTTTGGACGGCTATTTAGTCTATTGACATAAGAATTTTATTTGCTTAAATTGAAAATTCTATGAGAAAACGTTAGATGATATTCTGAATTTTTTTAAAATGTTAGACGATAATATAATGTTTTGTCGATCTCGAAGGTTATATACTGGAATTTTTTTTAAATAAGAATAAAATCTAAAGGGGTATAAAAGGAATATTTGCATAAATCAGCCAATAATATATGTTCGTATAAATATAAGGAATCCCATAGTGTAATTCAATAATTACATTCTGTCCCGATAAGTTTACTAATTACAAAAAATCTCTTAAATTTGTTGAGCCGTGATACTTTAGACTGTAGTGATACATGGTAATTTAAAACTGTTAAGAAAAAATAGGGGAGAAAAACGGTAAAGTTAATGTTGTTACTAAAACAGCTTAATTTGTGGTAACAGATCATTAATTTGCATTAAATCAGCACTTAATTGGATATTAATTTTAAAATTTGAAAATCAAAGATTATATCATCTATTTTGAATATGCTATTCAATTTACCTAAATATCAAAGATTATATCATCTGGACGACCAAGAAAAAGAAGAAGAAAGAATGCAAATGAAAAGATTTTGAACACAAACTGTTGTGGACAATGTGGACAAGAAGGGCACAACAGAAGAACTTGTACTTTCTACCCAAAAGAGAAGTGAATTAGTCGTAATGTTTCTATGATATCAAGAATAATTTATAACGTAAACATTTTAATGAATTTCAGTTTTCATTACAACTGCAAATTGAACACTTTGTGTTTAGATAAATAAACTTACAAACATGTGGTAATTAAATATTGAAGTCGTGCTTTTGATTATAAATACTTTGTTATTATTGGTGTTGATAAATATACTTGTGTCAATATTTGTTTTAAATATAAAATTTTATAAATCTTATGCTACAGTAAGATACATAAATTTAAGAATCATTAGGTAACATAATGTACATGATACATATGGTTTATCTAGTGTATCATGTACTTTTATTGTGTGTTTTTGGTACACATTGTTTATCTAATGTATCATGTACTTTTTAGTGTGTATCATTGGTTTGCACAATGATACATCTCCATTAGATAAAAAATACAAAAATATTATTGAGGTTATTGTGTACTTTACAATGACTATAAATCATGTATGATGTGAATTTATATAATTTAACTTGTGTAATGCTTTTTTTGTTATGCTTTTCTTGAAATATACAGTAAATAACTTTACTTTTAAAAAATAATACCAATTCATATGAATATGCTATTCAATTACCTAAATATCATGTAAAATTTAAGGATTATAGGGTAACATATTGTACATGATACATACGGTTTAGCCAATGTATCAGTTATTTTTAGTGTGTGTTTGATATATATGTATCATTTCGTTTTGCCAAAATACTAACCCGAGACAAGGTAGGCTTAACAATAATGTTTGTTGCTTCTTTTTTCCTTTTTTTGTTGTATTTTGACAACCTTTGATTCGATGTTTCGCCAGAGTTTTCGTTTGAATCCTTCTGAAGATTCATAGAATCATGCAAAGACTTTTTTCTATTTTCTTTCCAATTTTCATCGTCGGAATCATATATCCTTCTATTAATTAACGGATCCATTACTATGATGTAATAGAACAATTAACAAAAATAAAAAAGAGAAGAATATACGAATTGATGATGGATTAATAATAAAAAGATGCTGGGTTCAAACTATTACAGATTAGGAAGAAATAGACGATGATGGATTAAGAATAAAAAGAAGAAAAGAAAAAAATGTAATGGATTAAGATGAATGAAGATGATTAAGGAAAAAAAAAGAACTGAAACTTGATGGAGTAAGAAGAAGACGGTAGAAGTTAATGGAAGTTGTCCTGCTTCCTAATATTTTTACTTTTTTAATTTTCAAATTTTTCAAATTTTGAAATTCAAAATTTCAAAATTTGGTCTTTTAATTAAAATTAATTAAATTTAAAAATTTAAAAATTCAAAATCAAAAAGCTGATTAAAAAGTTGAGTGTTTAAATGGATAAAATTTAAAATTAAAAAACTGATTTAAGAGGTTGAGTGTTTTAATGGAGAAAAAATAGGCATTAAAATGGGTAAATGTGTATTATAAGAGAGAGAATGTAATGTATCTAAAAACTTACAATAAAATAAAAAAAAAGAAAATTATGTAATATTTAAAAAAAGTAGGAAAAATTGGAGAATATAAAAATTATAGTTGTGTATTTAAGTTATTTTTCCTACATGTTCTAATAGTTTTATCAATTTTCAAAGTGGGTTTTCAACTTCTCATAAAGCCCATTGGGCCCATGATGAGTTGGGCTTCCATTTGAATGACGATTCAATGTCAACAAACAAGGCTCATATTACCGATCTTCAGCTTGAATAAAAGAGGATATACACACGGTAATCGCCTTATCGGTTCGTATAAAATTAGTCAATTTGCGATGAAGCATCACCTATACAACGTACTTTTTCATGATGTTTCCACACTATACAACATACTTTGTTATATAAGATCGAAATTGATAAAGAAATTAAAAATTTAATTCAACTCAATCTCAAGAACGAGCTCTTAAGATAATGATTGTCCATGTTAGGATCGAATTCCCCACACACTTAACGAATGAAGAACACAAGAACTTTAGAGAGAAAGAGATGAGAGAGAAAGAGAGAAATCAATGTTTCGTGGTAACACTCCGTGAGTAAACTTCCACGGCGGTGGATATATATATTAATAAATGAGAGTATTTTAGGTTACAGAGAATAAATGGAGAATAAATATATGAACATTAATATATGACAGTACATCAAATATTAATCAAGCTCCACAACGTAACAGTCCATACTATATAAAGAGACTATATCATTTCTAAATAGCAGATGTAGAAACTCAAGACAAGCTTAACTGACAATGAGAATCATATAGTTGTCGGAGTCAAGATTAAGAGTTTGAAGAATCTAAATTGATTTATTTAAGGTTCATAAGTTAATATACATTTAAAAAAAATAATTTTCTAACTCAACATAGGATCTATACGAAAAAGCCAGTGAATTCGTCCGAACCCATAAATCCCTAACATTCCCAACTTACTAGGGATCGAGGCACAATTATTATAGTTGGTGCGTGTAAGAAAAAATACATTAACGAATAACCGAACCCCAACAACTCAAAGAAAGTTTATTTAAATTCTCAAATACCAGAAATTACAAACGCACATAAAAAAAAAAAATGTCAAACTTCACAAAGTGAAGCGAAACAATTCAAAACAAAATCAGGTAAAAATACATGCTCTTTTTTCTTAATTAGTCCCAACACTTCTCTAGCATACGCACTAAAATCCCACAAGTAGAAATTGGAGAGAATAGAGTGTACGCAGATGTTAACATCCATCGGGAACCTTAATTTTACATTGCTTAGGCAGATTCATTGCAGCTTCAGGACTGATTCCAAATTTCCCCAACTCAGATTTCTGGTTGCACATACACTGTAAATCAGCCTTGCGTAGCACTGCGCAACAATCCGGCGTCGGTTTCGGAGGTCTCTTC</genome_strand>
        <mrna_strand>CTTTT-TTTTTAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCCCCCCAAATTTTAT-TTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCCCTTTAGGGGGAAAGGGGGCCCCCCCCCCCCCCCCAAGTTTTTTTTTTTTTTTTTTTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAAGAAAGTTTATTTAAATTTTCAAATACCAGAAATTACAAACGCACATAAAAAAAAAAAATGTCAAACTTCACAAAGTGAAGCGAAACAATTCAAAACAAAATCAGGTAAAAATACATGCTCTTTTTTCTTAATTAGTCCCAACACTTCTCTAGCATACGCACTAAAATCCCACAAGTAGAAATTGGAGAGAATAGAGTGTACGCAGATGTTAACATCCATCGGGAACCTTAATTTTACATTGCTTAGGCAGATTCATTGCAGCTTCAGGACTGATTCCAAATTTCCCCAACTCAGATTTCTGGTTGCACATACACTGTAAATCAGCCTTGCGTAGCACTGCGCAACAATCCGGCGTCGGTTTCGGAGGTCTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E551630" ref_strand="+" ref_description="SGN-E551630 [cTSB-1-F20]">
      <seq>gaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgaaaatttaaataaactttctttgagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatggggggggggggggggggccccctttcccccaataggggggtaaaaaaaatttcggggggggttttttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="8000" stop="35206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8300" g_stop="8681" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8682" i_stop="10285" i_length="1604">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10286" g_stop="10302" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="399" r_length="17" r_score="0.824"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10303" i_stop="10377" i_length="75">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10378" g_stop="10405" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="427" r_length="28" r_score="0.786"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10406" i_stop="11196" i_length="791">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.333" a_score="0.40"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11197" g_stop="11246" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="475" r_length="48" r_score="0.400"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11247" i_stop="12458" i_length="1212">
            <donor d_prob="0.829" d_score="0.40"/>
            <acceptor a_prob="0.398" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12459" g_stop="12483" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="500" r_length="25" r_score="0.600"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12484" i_stop="12620" i_length="137">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12621" g_stop="12627" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="507" r_length="7" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E551630" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8300" e_stop="8681"/>
          <exon e_start="10286" e_stop="10302"/>
          <exon e_start="10378" e_stop="10405"/>
          <exon e_start="11197" e_stop="11246"/>
          <exon e_start="12459" e_stop="12483"/>
          <exon e_start="12621" e_stop="12627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGGGTTCGGTTATTCGTTAATGTATTTTTTCTTACACGCACCAACTATAATAATTGTGCCTCGATCCCTAGTAAGTTGGGAATGTTAGGGATTTATGGGTTCGGACGAATTCACTGGCTTTTTCGTATAGATCCTATGTTGAGTTAGAAAATTATTTTTTTTAAATGTATATTAACTTATGAACCTTAAATAAATCAATTTAGATTCTTCAAACTCTTAATCTTGACTCCGACAACTATATGATTCTCATTGTCAGTTAAGCTTGTCTTGAGTTTCTACATCTGCTATTTAGAAATGATATAGTCTCTTTATATAGTATGGACTGTTACGTTGTGGAGCTTGATTAATATTTGATGTACTGTCATATATTAATGTTCATATATTTATTCTCCATTTATTCTCTGTAACCTAAAATACTCTCATTTATTAATATATATATCCACCGCCGTGGAAGTTTACTCACGGAGTGTTACCACGAAACATTGATTTCTCTCTTTCTCTCTCATCTCTTTCTCTCTAAAGTTCTTGTGTTCTTCATTCGTTAAGTGTGTGGGGAATTCGATCCTAACATGGACAATCATTATCTTAAGAGCTCGTTCTTGAGATTGAGTTGAATTAAATTTTTAATTTCTTTATCAATTTCGATCTTATATAACAAAGTATGTTGTATAGTGTGGAAACATCATGAAAAAGTACGTTGTATAGGTGATGCTTCATCGCAAATTGACTAATTTTATACGAACCGATAAGGCGATTACCGTGTGTATATCCTCTTTTATTCAAGCTGAAGATCGGTAATATGAGCCTTGTTTGTTGACATTGAATCGTCATTCAAATGGAAGCCCAACTCATCATGGGCCCAATGGGCTTTATGAGAAGTTGAAAACCCACTTTGAAAATTGATAAAACTATTAGAACATGTAGGAAAAATAACTTAAATACACAACTATAATTTTTATATTCTCCAATTTTTCCTACTTTTTTTAAATATTACATAATTTTCTTTTTTTTTATTTTATTGTAAGTTTTTAGATACATTACATTCTCTCTCTTATAATACACATTTACCCATTTTAATGCCTATTTTTTCTCCATTAAAACACTCAACCTCTTAAATCAGTTTTTTAATTTTAAATTTTATCCATTTAAACACTCAACTTTTTAATCAGCTTTTTGATTTTGAATTTTTAAATTTTTAAATTTAATTAATTTTAATTAAAAGACCAAATTTTGAAATTTTGAATTTCAAAATTTGAAAAATTTGAAAATTAAAAAAGTAAAAATATTAGGAAGCAGGACAACTTCCATTAACTTCTACCGTCTTCTTCTTACTCCATCAAGTTTCAGTTCTTTTTTTTTCCTTAATCATCTTCATTCATCTTAATCCATTACATTTTTTTCTTTTCTTCTTTTTATTCTTAATCCATCATCGTCTATTTCTTCCTAATCTGTAATAGTTTGAACCCAGCATCTTTTTATTATTAATCCATCATCAATTCGTATATTCTTCTCTTTTTTATTTTTGTTAATTGTTCTATTACATCATAGTAATGGATCCGTTAATTAATAGAAGGATATATGATTCCGACGATGAAAATTGGAAAGAAAATAGAAAAAAGTCTTTGCATGATTCTATGAATCTTCAGAAGGATTCAAACGAAAACTCTGGCGAAACATCGAATCAAAGGTTGTCAAAATACAACAAAAAAAGGAAAAAAGAAGCAACAAACATTATTGTTAAGCCTACCTTGTCTCGGGTTAGTATTTTGGCAAAACGAAATGATACATATATATCAAACACACACTAAAAATAACTGATACATTGGCTAAACCGTATGTATCATGTACAATATGTTACCCTATAATCCTTAAATTTTACATGATATTTAGGTAATTGAATAGCATATTCATATGAATTGGTATTATTTTTTAAAAGTAAAGTTATTTACTGTATATTTCAAGAAAAGCATAACAAAAAAAGCATTACACAAGTTAAATTATATAAATTCACATCATACATGATTTATAGTCATTGTAAAGTACACAATAACCTCAATAATATTTTTGTATTTTTTATCTAATGGAGATGTATCATTGTGCAAACCAATGATACACACTAAAAAGTACATGATACATTAGATAAACAATGTGTACCAAAAACACACAATAAAAGTACATGATACACTAGATAAACCATATGTATCATGTACATTATGTTACCTAATGATTCTTAAATTTATGTATCTTACTGTAGCATAAGATTTATAAAATTTTATATTTAAAACAAATATTGACACAAGTATATTTATCAACACCAATAATAACAAAGTATTTATAATCAAAAGCACGACTTCAATATTTAATTACCACATGTTTGTAAGTTTATTTATCTAAACACAAAGTGTTCAATTTGCAGTTGTAATGAAAACTGAAATTCATTAAAATGTTTACGTTATAAATTATTCTTGATATCATAGAAACATTACGACTAATTCACTTCTCTTTTGGGTAGAAAGTACAAGTTCTTCTGTTGTGCCCTTCTTGTCCACATTGTCCACAACAGTTTGTGTTCAAAATCTTTTCATTTGCATTCTTTCTTCTTCTTTTTCTTGGTCGTCCAGATGATATAATCTTTGATATTTAGGTAAATTGAATAGCATATTCAAAATAGATGATATAATCTTTGATTTTCAAATTTTAAAATTAATATCCAATTAAGTGCTGATTTAATGCAAATTAATGATCTGTTACCACAAATTAAGCTGTTTTAGTAACAACATTAACTTTACCGTTTTTCTCCCCTATTTTTTCTTAACAGTTTTAAATTACCATGTATCACTACAGTCTAAAGTATCACGGCTCAACAAATTTAAGAGATTTTTTGTAATTAGTAAACTTATCGGGACAGAATGTAATTATTGAATTACACTATGGGATTCCTTATATTTATACGAACATATATTATTGGCTGATTTATGCAAATATTCCTTTTATACCCCTTTAGATTTTATTCTTATTTAAAAAAAATTCCAGTATATAACCTTCGAGATCGACAAAACATTATATTATCGTCTAACATTTTAAAAAAATTCAGAATATCATCTAACGTTTTCTCATAGAATTTTCAATTTAAGCAAATAAAATTCTTATGTCAATAGACTAAATAGCCGTCCAAAAAAGCGAAAATTTTGTCTACTATTTTAAACGTTCATTTAAAACTTGACTTTAGAACGAATATTCCAAAATCAAGAAGTCAAGTCTTCATTGGTATTATATGGTAGTATTTATTATATAGTAGTAATTAAATTATAGTGAATATGATTTGACCAATAGAAAAAAAAAACAAGAGATACAATAATACTAGGAAGTAATTGACAAGATAACAAAAAAGTTGCAAAAGGCATAAATTGAATGTGTAATAAATTACATCATCGTGCAAACAACTACAACGTCTTTTTTTTTTTAAACAATTCTTAAGGCCACACAAACGCGTACTGTTGATATGACCTTTTCTTTCGTTTCAGTTCGATATTTGATATCTGTTTTGAGTTTCCACTAATTTAAATTTGTATCATGTAAGACTTATTTAAAAAAATAACGTGTTCTATTGAAATATTTTTAATGCTCAAACTTAATCTTGAGATTTATTATTAAAAATGAAAAATTTTATTCATTTCACTACAATTCGGTGCGATTATATTAGTGATATATTCTAACGGCAACTTGATGTTCAAAAATTTTTGGGCCTTTTTTTTTTGGTTTGGATTTGGAAAGATCAAAATTGGGGATTGGATTTAATGCACAATTCTCTCTCTCTCTATATATATATATATTTTTTATTTGTTCAGATTAAAATATTAAAAGATAATTTATCACTTAGCTCCTAATATTATAATTTATTAAATTTATTATATTTAAATTGTAACATGCTAAAAGGGACAAA</genome_strand>
        <mrna_strand>GAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAAAATTTAAATAAACTTTCTTTGAGTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA...........................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGGGGGGGGGGGGGGGGGCCC-CCTTTCCCCCAAT-AGGGGGGTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAATTTCGGGGGGGGTTTTTT.........................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E554989" ref_strand="+" ref_description="SGN-E554989 [cTSC-6-B10]">
      <seq>ccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgaaaatttaaataaactttctttgagttgttggggttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaangggggggggggggggggcccccccccccccctttaagagaaaatataaaattccggggggggggtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="8010" stop="35206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8310" g_stop="8687" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8688" i_stop="10371" i_length="1684">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10372" g_stop="10405" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="412" r_length="34" r_score="0.735"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10406" i_stop="12017" i_length="1612">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.005" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12018" g_stop="12074" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="469" r_length="57" r_score="0.649"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12075" i_stop="12458" i_length="384">
            <donor d_prob="0.000" d_score="0.60"/>
            <acceptor a_prob="0.398" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12459" g_stop="12483" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="494" r_length="25" r_score="0.400"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12484" i_stop="13599" i_length="1116">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.638" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13600" g_stop="13632" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="527" r_length="33" r_score="0.424"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13633" i_stop="15822" i_length="2190">
            <donor d_prob="0.876" d_score="0.00"/>
            <acceptor a_prob="0.431" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15823" g_stop="15852" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="556" r_length="29" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E554989" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8310" e_stop="8687"/>
          <exon e_start="10372" e_stop="10405"/>
          <exon e_start="12018" e_stop="12074"/>
          <exon e_start="12459" e_stop="12483"/>
          <exon e_start="13600" e_stop="13632"/>
          <exon e_start="15823" e_stop="15852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGGGTTCGGTTATTCGTTAATGTATTTTTTCTTACACGCACCAACTATAATAATTGTGCCTCGATCCCTAGTAAGTTGGGAATGTTAGGGATTTATGGGTTCGGACGAATTCACTGGCTTTTTCGTATAGATCCTATGTTGAGTTAGAAAATTATTTTTTTTAAATGTATATTAACTTATGAACCTTAAATAAATCAATTTAGATTCTTCAAACTCTTAATCTTGACTCCGACAACTATATGATTCTCATTGTCAGTTAAGCTTGTCTTGAGTTTCTACATCTGCTATTTAGAAATGATATAGTCTCTTTATATAGTATGGACTGTTACGTTGTGGAGCTTGATTAATATTTGATGTACTGTCATATATTAATGTTCATATATTTATTCTCCATTTATTCTCTGTAACCTAAAATACTCTCATTTATTAATATATATATCCACCGCCGTGGAAGTTTACTCACGGAGTGTTACCACGAAACATTGATTTCTCTCTTTCTCTCTCATCTCTTTCTCTCTAAAGTTCTTGTGTTCTTCATTCGTTAAGTGTGTGGGGAATTCGATCCTAACATGGACAATCATTATCTTAAGAGCTCGTTCTTGAGATTGAGTTGAATTAAATTTTTAATTTCTTTATCAATTTCGATCTTATATAACAAAGTATGTTGTATAGTGTGGAAACATCATGAAAAAGTACGTTGTATAGGTGATGCTTCATCGCAAATTGACTAATTTTATACGAACCGATAAGGCGATTACCGTGTGTATATCCTCTTTTATTCAAGCTGAAGATCGGTAATATGAGCCTTGTTTGTTGACATTGAATCGTCATTCAAATGGAAGCCCAACTCATCATGGGCCCAATGGGCTTTATGAGAAGTTGAAAACCCACTTTGAAAATTGATAAAACTATTAGAACATGTAGGAAAAATAACTTAAATACACAACTATAATTTTTATATTCTCCAATTTTTCCTACTTTTTTTAAATATTACATAATTTTCTTTTTTTTTATTTTATTGTAAGTTTTTAGATACATTACATTCTCTCTCTTATAATACACATTTACCCATTTTAATGCCTATTTTTTCTCCATTAAAACACTCAACCTCTTAAATCAGTTTTTTAATTTTAAATTTTATCCATTTAAACACTCAACTTTTTAATCAGCTTTTTGATTTTGAATTTTTAAATTTTTAAATTTAATTAATTTTAATTAAAAGACCAAATTTTGAAATTTTGAATTTCAAAATTTGAAAAATTTGAAAATTAAAAAAGTAAAAATATTAGGAAGCAGGACAACTTCCATTAACTTCTACCGTCTTCTTCTTACTCCATCAAGTTTCAGTTCTTTTTTTTTCCTTAATCATCTTCATTCATCTTAATCCATTACATTTTTTTCTTTTCTTCTTTTTATTCTTAATCCATCATCGTCTATTTCTTCCTAATCTGTAATAGTTTGAACCCAGCATCTTTTTATTATTAATCCATCATCAATTCGTATATTCTTCTCTTTTTTATTTTTGTTAATTGTTCTATTACATCATAGTAATGGATCCGTTAATTAATAGAAGGATATATGATTCCGACGATGAAAATTGGAAAGAAAATAGAAAAAAGTCTTTGCATGATTCTATGAATCTTCAGAAGGATTCAAACGAAAACTCTGGCGAAACATCGAATCAAAGGTTGTCAAAATACAACAAAAAAAGGAAAAAAGAAGCAACAAACATTATTGTTAAGCCTACCTTGTCTCGGGTTAGTATTTTGGCAAAACGAAATGATACATATATATCAAACACACACTAAAAATAACTGATACATTGGCTAAACCGTATGTATCATGTACAATATGTTACCCTATAATCCTTAAATTTTACATGATATTTAGGTAATTGAATAGCATATTCATATGAATTGGTATTATTTTTTAAAAGTAAAGTTATTTACTGTATATTTCAAGAAAAGCATAACAAAAAAAGCATTACACAAGTTAAATTATATAAATTCACATCATACATGATTTATAGTCATTGTAAAGTACACAATAACCTCAATAATATTTTTGTATTTTTTATCTAATGGAGATGTATCATTGTGCAAACCAATGATACACACTAAAAAGTACATGATACATTAGATAAACAATGTGTACCAAAAACACACAATAAAAGTACATGATACACTAGATAAACCATATGTATCATGTACATTATGTTACCTAATGATTCTTAAATTTATGTATCTTACTGTAGCATAAGATTTATAAAATTTTATATTTAAAACAAATATTGACACAAGTATATTTATCAACACCAATAATAACAAAGTATTTATAATCAAAAGCACGACTTCAATATTTAATTACCACATGTTTGTAAGTTTATTTATCTAAACACAAAGTGTTCAATTTGCAGTTGTAATGAAAACTGAAATTCATTAAAATGTTTACGTTATAAATTATTCTTGATATCATAGAAACATTACGACTAATTCACTTCTCTTTTGGGTAGAAAGTACAAGTTCTTCTGTTGTGCCCTTCTTGTCCACATTGTCCACAACAGTTTGTGTTCAAAATCTTTTCATTTGCATTCTTTCTTCTTCTTTTTCTTGGTCGTCCAGATGATATAATCTTTGATATTTAGGTAAATTGAATAGCATATTCAAAATAGATGATATAATCTTTGATTTTCAAATTTTAAAATTAATATCCAATTAAGTGCTGATTTAATGCAAATTAATGATCTGTTACCACAAATTAAGCTGTTTTAGTAACAACATTAACTTTACCGTTTTTCTCCCCTATTTTTTCTTAACAGTTTTAAATTACCATGTATCACTACAGTCTAAAGTATCACGGCTCAACAAATTTAAGAGATTTTTTGTAATTAGTAAACTTATCGGGACAGAATGTAATTATTGAATTACACTATGGGATTCCTTATATTTATACGAACATATATTATTGGCTGATTTATGCAAATATTCCTTTTATACCCCTTTAGATTTTATTCTTATTTAAAAAAAATTCCAGTATATAACCTTCGAGATCGACAAAACATTATATTATCGTCTAACATTTTAAAAAAATTCAGAATATCATCTAACGTTTTCTCATAGAATTTTCAATTTAAGCAAATAAAATTCTTATGTCAATAGACTAAATAGCCGTCCAAAAAAGCGAAAATTTTGTCTACTATTTTAAACGTTCATTTAAAACTTGACTTTAGAACGAATATTCCAAAATCAAGAAGTCAAGTCTTCATTGGTATTATATGGTAGTATTTATTATATAGTAGTAATTAAATTATAGTGAATATGATTTGACCAATAGAAAAAAAAAACAAGAGATACAATAATACTAGGAAGTAATTGACAAGATAACAAAAAAGTTGCAAAAGGCATAAATTGAATGTGTAATAAATTACATCATCGTGCAAACAACTACAACGTCTTTTTTTTTTTAAACAATTCTTAAGGCCACACAAACGCGTACTGTTGATATGACCTTTTCTTTCGTTTCAGTTCGATATTTGATATCTGTTTTGAGTTTCCACTAATTTAAATTTGTATCATGTAAGACTTATTTAAAAAAATAACGTGTTCTATTGAAATATTTTTAATGCTCAAACTTAATCTTGAGATTTATTATTAAAAATGAAAAATTTTATTCATTTCACTACAATTCGGTGCGATTATATTAGTGATATATTCTAACGGCAACTTGATGTTCAAAAATTTTTGGGCCTTTTTTTTTTGGTTTGGATTTGGAAAGATCAAAATTGGGGATTGGATTTAATGCACAATTCTCTCTCTCTCTATATATATATATATTTTTTATTTGTTCAGATTAAAATATTAAAAGATAATTTATCACTTAGCTCCTAATATTATAATTTATTAAATTTATTATATTTAAATTGTAACATGCTAAAAGGGACAAAAGAAGCAGTTGATTCTTTTGTTTAGCGAGATTGACCGAAAAAGTGACAACTTCACTTTAAGAATTTCGTTTCATAATTTTCATAAAGAAACAATAAAGTAGACTTTTAATTAGTTAATGAGACCTCATAATAATAAAATTTTTCTTAAACTTAACTTTCATATATTTAATTTTTGTAGACTTTTTAAGAGACTTTCCTATTTAATTTAGTTTAGTTGAGTTTCAATTTTGAAAATTTTCTTTCAGAAAGCACGCATTTAAAAAGTTAATCAAAAAATTTAAAATAAATATCGAATATTTGATTAAAAACAAAAACAAAAATAAAAACAAAAATTTAATTTTATCTGATTACTCTCTTAGGATTTTTATAATAAGAAATGAAATATCTAAAATAACAAGATATAAGTTATACGCGTTATGCAATTGTCGATCTGTATTTAATTCTTATTTTGTATCCAACAATACATTTGTTACTTTGCTAGTGATAATATATATATCTTGATCAAGTCTTTGGACTCAATAAAAAGAAATACACAAAAACGTACATATATTATGTAGAAATATTGTTCACGTCACTTTTCAGTCTTTTTCTTAAAAAATAATAATTAATATCGTAGAGTTTTAAATTTTACTAATAAAACATGATAACAATGACTATTTTTCGATTATAATGATTTAAAAGTTTAATTTGTAAATTTTATTCAATTATTAGAGAGCCGTCTCTCCAATTTGCTAATTCGTGGCCATGTGCGGCCATATGCCTTATTAGTTCCCACCTAGGAACTTTCTTATAAAATAAATTAATTTTGTGACATTTTTTTATTTTAGTGTCATTGTAACTACTTATAATTAAGTTAATAAACATATAATATGATTTTATGGTTTTCGAATTTAATGTATAATATGAGATAAGCTCTTGCATCATATTTTTATCGGGGTTTGGTATTTATATTGAAACTCTAATTGAATTTAGGTCGCACATTGCTTGACTTATTCAAAAATGAAGGTTTTAATCATTTTTCTCCATACCTAAGGTTCGAATCTGAAATCCTTAAAATACTTTCAATACTTTTACTTTATAATAATAATAATATGCTCACTATAATTCAGATAGTAATTAGAATTTATCACTAGCTAATTCGTTGCTAGCTAGTGTGTTGTTAATTAGAATTAGTGACATATTTAGCATAAGGTATCGATTTTTCTAAAAAAAAATTTATTATTATTATTTATAGAGAATTATATAATAAGGTTCAAGACAATGCTAAAATGACTATTTTAAGGCCCGTTTGGCCATAAATTTTCCAAATAATATTTGGGAAAAATTTGGCAAAATAATGTTTGTCCATACAATTTGTCATTATTTGGCAAATATTTTTGGCAAATATCCCAAATTTCCAAATACTAGTTTTTTCTAGTATTTGGGCCAAATACCATTATTTGGGATATTTTAAAAATAAAAATTTTACCTCAATCTTTTATTTTTTACAAAAACACCCTCTCTAGTAGTTGCTTGCGTTGTATTACATCATTTTTTTACGTGAACACCAAAATAGTGGTGAAATATTTAGTGAATATTAAATAATGATATGATTGTTGATGAAAATTATTAAAAATTGGCTCTAGGTAACAAAGTCATGTACTTTATCTACTTCACGATGTATAGAATAATTCTTGTTGCACTCACTCCAAATTACCACATTGCTTCAGTGTCATGGACATTATTTGTTATTATTGTAACTAACATTCAATTGACTTGTAATACAAACTTTTAGTTAGTTTTGATAGTTTTTAAAACTTGTGTGTATAAATCATATTTTTCTAAAAAGGTGAAATATATTTCCCAAATTTTATGGCCAAACACATGGTGAAATTTCACCCAAATTTTCACTCAAATAATATTTGCCAAGAATATTTGAAAATCTATGGCCAAACGCTAGCTAAGAGTTTTGTTTCAGAACATTTTTTTATTAAATAGAGATTAAGATAACTAATTATTTACTTTGATTCAAACTCTTGTTTGACTGTAAATTGAATAAAGAACATATTTACCACTAATAACTACTAAGATATGCTAATCCATAAGAGACAAGTGTTTCCGACTTCCTAAATCCAACAACCTTGCCAATTGCAAAAATATCATGATCGAGTCAGAAATTTTTTAATTATTTTTTTATAAATAAATTAAACAAATTCAATATTTACTAATAAAAATTTATATAATTAAAAAAAAATCAAATAAATCACTTGTGTATCTAGTCCAGTTTCCAAGTCCATAGATTAATTAAACTACAAAATTTTACAAAAATTCGTTAGATTTGTCTCGAGTTCACCAATTTATTTTAACTATTGTCCACATGCATTTTTTCAAATATTTTGTTTTGTACTAATAGACATAAATTATTATTAGAACTAAAATATCCTCTCTCTCTTTTTTTTTTTTTTACAAAAACATCTTAACTGGACTTGTCGATATTGGTGCATAATCTTTAGTATTTTAATTTTATGTTTATAAGTGACTTGGTGCCCACTATGTCATTTGTACAAAATACTATGCACGTAATTAGATAGAATTAGAATATAACTTTATGCTCCATCCATTAATAATAATCATATTTTAAAATATTATGTGATATTATATATCTATGGTTTAGATTAATAAAGTGATGAATTCATAATATTTTGTGCAAAATCTACTCACCAACCGTTGTACCCGTCAACAATATTCATTTTTTATTTTTAAAAAAATAATACAAAGTTGAGTCTTCTGACCGACCATTGCTTATTCAATAACCACAAAAAATAATTCTCAAAACTTATTTATTATTTTTATCTAGAGAAGTTAGATGAAACACTTTTTTTAAAAAAAGGATTACGATGAGCATCCATGGTAATGTTGAATAATAATTGGTCAACTCTATTTTATTTTGTTTTATTCTTAATTCTCATTAATTTTTTATATTCAAATCCGAAGTTTGAAACTTACACTAGCTAAGATCAATTTTTGGGATCACACTTATTTTTTTGAAAAAACAACCTATAAATCGAGTAGTTTATAATGATAAAAAAAAAATTAAATAGCTAAGATAATAAAAAAGCTATAAGTTTGATGACTATTTAAATAATTGATTAGTTTATCTTTTTCTAATAAAAAATATTTATTTTTTAAAGTGAAATTTCTTTAAGCAAACTCCAGAATATCGAAGACGGGATAGTAAACAAAAAA</genome_strand>
        <mrna_strand>CCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAAAATTTAAATAAACTTTCTTTGAGTTGTTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAANGGGGGGGGGGGGGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCCCCCCCCCCCCCTTTAAGAGAAAATATAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCCGGGGGGGGGGT-TTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E555084" ref_strand="-" ref_description="SGN-E555084 [cTSC-6-F7]">
      <seq>ttttttttttaaacccccccccccgaaaaaaatatcccccccccctggggaagggggggcccccccccccccccccccttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttaaccccaacaactcaaagaaagtttatttaaattttcaaataccagaaattacaaacgcacataaaaaaaaaaaatgtcaaacttcacaaagtgaagcgaaacaattcaaaacaaaatcaggtaaaaatacatgctcttttttcttaattagtcccaacacttctctagcatacgcactaaaatcccacaagtagaaattggagagaatagagtgtacgcagatgttaacatccatcgggaaccttaattttacattgcttaggcagattcattgcagcttcaggactgattccaaatttccccaactcagatttctggttgcacatacactgtaaatcagccttgcgtagcactgcgcaacaatccggcgtcggtttcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="76556" stop="8010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13584" g_stop="13537" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.521"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13536" i_stop="13388" i_length="149">
            <donor d_prob="0.000" d_score="0.52"/>
            <acceptor a_prob="0.575" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13387" g_stop="13360" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="76" r_length="28" r_score="0.357"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13359" i_stop="12962" i_length="398">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12961" g_stop="12931" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="107" r_length="31" r_score="0.806"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12930" i_stop="12045" i_length="886">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12044" g_stop="12016" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="136" r_length="29" r_score="0.724"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12015" i_stop="10414" i_length="1602">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10413" g_stop="10378" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="172" r_length="36" r_score="0.750"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="10377" i_stop="8691" i_length="1687">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8690" g_stop="8310" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="553" r_length="381" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E555084" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555084" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13584" e_stop="13537"/>
          <exon e_start="13387" e_stop="13360"/>
          <exon e_start="12961" e_stop="12931"/>
          <exon e_start="12044" e_stop="12016"/>
          <exon e_start="10413" e_stop="10378"/>
          <exon e_start="8690" e_stop="8310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCAATATAAATACCAAACCCCGATAAAAATATGATGCAAGAGCTTATCTCATATTATACATTAAATTCGAAAACCATAAAATCATATTATATGTTTATTAACTTAATTATAAGTAGTTACAATGACACTAAAATAAAAAAATGTCACAAAATTAATTTATTTTATAAGAAAGTTCCTAGGTGGGAACTAATAAGGCATATGGCCGCACATGGCCACGAATTAGCAAATTGGAGAGACGGCTCTCTAATAATTGAATAAAATTTACAAATTAAACTTTTAAATCATTATAATCGAAAAATAGTCATTGTTATCATGTTTTATTAGTAAAATTTAAAACTCTACGATATTAATTATTATTTTTTAAGAAAAAGACTGAAAAGTGACGTGAACAATATTTCTACATAATATATGTACGTTTTTGTGTATTTCTTTTTATTGAGTCCAAAGACTTGATCAAGATATATATATTATCACTAGCAAAGTAACAAATGTATTGTTGGATACAAAATAAGAATTAAATACAGATCGACAATTGCATAACGCGTATAACTTATATCTTGTTATTTTAGATATTTCATTTCTTATTATAAAAATCCTAAGAGAGTAATCAGATAAAATTAAATTTTTGTTTTTATTTTTGTTTTTGTTTTTAATCAAATATTCGATATTTATTTTAAATTTTTTGATTAACTTTTTAAATGCGTGCTTTCTGAAAGAAAATTTTCAAAATTGAAACTCAACTAAACTAAATTAAATAGGAAAGTCTCTTAAAAAGTCTACAAAAATTAAATATATGAAAGTTAAGTTTAAGAAAAATTTTATTATTATGAGGTCTCATTAACTAATTAAAAGTCTACTTTATTGTTTCTTTATGAAAATTATGAAACGAAATTCTTAAAGTGAAGTTGTCACTTTTTCGGTCAATCTCGCTAAACAAAAGAATCAACTGCTTCTTTTGTCCCTTTTAGCATGTTACAATTTAAATATAATAAATTTAATAAATTATAATATTAGGAGCTAAGTGATAAATTATCTTTTAATATTTTAATCTGAACAAATAAAAAATATATATATATATAGAGAGAGAGAGAATTGTGCATTAAATCCAATCCCCAATTTTGATCTTTCCAAATCCAAACCAAAAAAAAAAGGCCCAAAAATTTTTGAACATCAAGTTGCCGTTAGAATATATCACTAATATAATCGCACCGAATTGTAGTGAAATGAATAAAATTTTTCATTTTTAATAATAAATCTCAAGATTAAGTTTGAGCATTAAAAATATTTCAATAGAACACGTTATTTTTTTAAATAAGTCTTACATGATACAAATTTAAATTAGTGGAAACTCAAAACAGATATCAAATATCGAACTGAAACGAAAGAAAAGGTCATATCAACAGTACGCGTTTGTGTGGCCTTAAGAATTGTTTAAAAAAAAAAAGACGTTGTAGTTGTTTGCACGATGATGTAATTTATTACACATTCAATTTATGCCTTTTGCAACTTTTTTGTTATCTTGTCAATTACTTCCTAGTATTATTGTATCTCTTGTTTTTTTTTTCTATTGGTCAAATCATATTCACTATAATTTAATTACTACTATATAATAAATACTACCATATAATACCAATGAAGACTTGACTTCTTGATTTTGGAATATTCGTTCTAAAGTCAAGTTTTAAATGAACGTTTAAAATAGTAGACAAAATTTTCGCTTTTTTGGACGGCTATTTAGTCTATTGACATAAGAATTTTATTTGCTTAAATTGAAAATTCTATGAGAAAACGTTAGATGATATTCTGAATTTTTTTAAAATGTTAGACGATAATATAATGTTTTGTCGATCTCGAAGGTTATATACTGGAATTTTTTTTAAATAAGAATAAAATCTAAAGGGGTATAAAAGGAATATTTGCATAAATCAGCCAATAATATATGTTCGTATAAATATAAGGAATCCCATAGTGTAATTCAATAATTACATTCTGTCCCGATAAGTTTACTAATTACAAAAAATCTCTTAAATTTGTTGAGCCGTGATACTTTAGACTGTAGTGATACATGGTAATTTAAAACTGTTAAGAAAAAATAGGGGAGAAAAACGGTAAAGTTAATGTTGTTACTAAAACAGCTTAATTTGTGGTAACAGATCATTAATTTGCATTAAATCAGCACTTAATTGGATATTAATTTTAAAATTTGAAAATCAAAGATTATATCATCTATTTTGAATATGCTATTCAATTTACCTAAATATCAAAGATTATATCATCTGGACGACCAAGAAAAAGAAGAAGAAAGAATGCAAATGAAAAGATTTTGAACACAAACTGTTGTGGACAATGTGGACAAGAAGGGCACAACAGAAGAACTTGTACTTTCTACCCAAAAGAGAAGTGAATTAGTCGTAATGTTTCTATGATATCAAGAATAATTTATAACGTAAACATTTTAATGAATTTCAGTTTTCATTACAACTGCAAATTGAACACTTTGTGTTTAGATAAATAAACTTACAAACATGTGGTAATTAAATATTGAAGTCGTGCTTTTGATTATAAATACTTTGTTATTATTGGTGTTGATAAATATACTTGTGTCAATATTTGTTTTAAATATAAAATTTTATAAATCTTATGCTACAGTAAGATACATAAATTTAAGAATCATTAGGTAACATAATGTACATGATACATATGGTTTATCTAGTGTATCATGTACTTTTATTGTGTGTTTTTGGTACACATTGTTTATCTAATGTATCATGTACTTTTTAGTGTGTATCATTGGTTTGCACAATGATACATCTCCATTAGATAAAAAATACAAAAATATTATTGAGGTTATTGTGTACTTTACAATGACTATAAATCATGTATGATGTGAATTTATATAATTTAACTTGTGTAATGCTTTTTTTGTTATGCTTTTCTTGAAATATACAGTAAATAACTTTACTTTTAAAAAATAATACCAATTCATATGAATATGCTATTCAATTACCTAAATATCATGTAAAATTTAAGGATTATAGGGTAACATATTGTACATGATACATACGGTTTAGCCAATGTATCAGTTATTTTTAGTGTGTGTTTGATATATATGTATCATTTCGTTTTGCCAAAATACTAACCCGAGACAAGGTAGGCTTAACAATAATGTTTGTTGCTTCTTTTTTCCTTTTTTTGTTGTATTTTGACAACCTTTGATTCGATGTTTCGCCAGAGTTTTCGTTTGAATCCTTCTGAAGATTCATAGAATCATGCAAAGACTTTTTTCTATTTTCTTTCCAATTTTCATCGTCGGAATCATATATCCTTCTATTAATTAACGGATCCATTACTATGATGTAATAGAACAATTAACAAAAATAAAAAAGAGAAGAATATACGAATTGATGATGGATTAATAATAAAAAGATGCTGGGTTCAAACTATTACAGATTAGGAAGAAATAGACGATGATGGATTAAGAATAAAAAGAAGAAAAGAAAAAAATGTAATGGATTAAGATGAATGAAGATGATTAAGGAAAAAAAAAGAACTGAAACTTGATGGAGTAAGAAGAAGACGGTAGAAGTTAATGGAAGTTGTCCTGCTTCCTAATATTTTTACTTTTTTAATTTTCAAATTTTTCAAATTTTGAAATTCAAAATTTCAAAATTTGGTCTTTTAATTAAAATTAATTAAATTTAAAAATTTAAAAATTCAAAATCAAAAAGCTGATTAAAAAGTTGAGTGTTTAAATGGATAAAATTTAAAATTAAAAAACTGATTTAAGAGGTTGAGTGTTTTAATGGAGAAAAAATAGGCATTAAAATGGGTAAATGTGTATTATAAGAGAGAGAATGTAATGTATCTAAAAACTTACAATAAAATAAAAAAAAAGAAAATTATGTAATATTTAAAAAAAGTAGGAAAAATTGGAGAATATAAAAATTATAGTTGTGTATTTAAGTTATTTTTCCTACATGTTCTAATAGTTTTATCAATTTTCAAAGTGGGTTTTCAACTTCTCATAAAGCCCATTGGGCCCATGATGAGTTGGGCTTCCATTTGAATGACGATTCAATGTCAACAAACAAGGCTCATATTACCGATCTTCAGCTTGAATAAAAGAGGATATACACACGGTAATCGCCTTATCGGTTCGTATAAAATTAGTCAATTTGCGATGAAGCATCACCTATACAACGTACTTTTTCATGATGTTTCCACACTATACAACATACTTTGTTATATAAGATCGAAATTGATAAAGAAATTAAAAATTTAATTCAACTCAATCTCAAGAACGAGCTCTTAAGATAATGATTGTCCATGTTAGGATCGAATTCCCCACACACTTAACGAATGAAGAACACAAGAACTTTAGAGAGAAAGAGATGAGAGAGAAAGAGAGAAATCAATGTTTCGTGGTAACACTCCGTGAGTAAACTTCCACGGCGGTGGATATATATATTAATAAATGAGAGTATTTTAGGTTACAGAGAATAAATGGAGAATAAATATATGAACATTAATATATGACAGTACATCAAATATTAATCAAGCTCCACAACGTAACAGTCCATACTATATAAAGAGACTATATCATTTCTAAATAGCAGATGTAGAAACTCAAGACAAGCTTAACTGACAATGAGAATCATATAGTTGTCGGAGTCAAGATTAAGAGTTTGAAGAATCTAAATTGATTTATTTAAGGTTCATAAGTTAATATACATTTAAAAAAAATAATTTTCTAACTCAACATAGGATCTATACGAAAAAGCCAGTGAATTCGTCCGAACCCATAAATCCCTAACATTCCCAACTTACTAGGGATCGAGGCACAATTATTATAGTTGGTGCGTGTAAGAAAAAATACATTAACGAATAACCGAACCCCAACAACTCAAAGAAAGTTTATTTAAATTCTCAAATACCAGAAATTACAAACGCACATAAAAAAAAAAAATGTCAAACTTCACAAAGTGAAGCGAAACAATTCAAAACAAAATCAGGTAAAAATACATGCTCTTTTTTCTTAATTAGTCCCAACACTTCTCTAGCATACGCACTAAAATCCCACAAGTAGAAATTGGAGAGAATAGAGTGTACGCAGATGTTAACATCCATCGGGAACCTTAATTTTACATTGCTTAGGCAGATTCATTGCAGCTTCAGGACTGATTCCAAATTTCCCCAACTCAGATTTCTGGTTGCACATACACTGTAAATCAGCCTTGCGTAGCACTGCGCAACAATCCGGCGTCGGTTTCGG</genome_strand>
        <mrna_strand>TTTTTTTTTTAAACCCCCCCCCCCGAAAAAAATATCCCCCCCCCCTGG.....................................................................................................................................................GGAAGGGGGGGCCCCCCCCCCCCCCCCC..............................................................................................................................................................................................................................................................................................................................................................................................................CCTTTTTTTTTTTTTTTTTTTTTTTTTTTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCCCAACAACTCAAAGAAAGTTTATTTAAATTTTCAAATACCAGAAATTACAAACGCACATAAAAAAAAAAAATGTCAAACTTCACAAAGTGAAGCGAAACAATTCAAAACAAAATCAGGTAAAAATACATGCTCTTTTTTCTTAATTAGTCCCAACACTTCTCTAGCATACGCACTAAAATCCCACAAGTAGAAATTGGAGAGAATAGAGTGTACGCAGATGTTAACATCCATCGGGAACCTTAATTTTACATTGCTTAGGCAGATTCATTGCAGCTTCAGGACTGATTCCAAATTTCCCCAACTCAGATTTCTGGTTGCACATACACTGTAAATCAGCCTTGCGTAGCACTGCGCAACAATCCGGCGTCGGTTTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E221814" ref_strand="-" ref_description="SGN-E221814 [cLEL-10-O23]">
      <seq>agtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgagaatttaaataaactttctttgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="8036" stop="8978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8336" g_stop="8678" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="344" polyA_stop="361"/>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E221814" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221814" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="8336" e_stop="8678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGA</genome_strand>
        <mrna_strand>AGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E722731" ref_strand="+" ref_description="SGN-E722731 [FC18AE12]">
      <seq>ttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttaatgcgtatgctagataagtgttgggactaattaagaaaaaaaagcttgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacatttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="8085" stop="8923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8385" g_stop="8623" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E722731" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8385" e_stop="8623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTT</genome_strand>
        <mrna_strand>TTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAATGCGTATGCTAGATAAGTGTTGGGACTAATTAAGAAAAAAAAGCTTGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E353041" ref_strand="+" ref_description="SGN-E353041 [cTOS-14-D9]">
      <seq>ttttttttttttttttttttttttttttttttccaaagaaagtttatttaaattctcaaataccagaaattacaaacgcacataaaaaaaaaaaaaatgtcaaacttcacaaagtgaagcgaaacaattcaaaacaaaatcaggtaaaaatacatgctcttttttcttaattagtcccaacacttctctagcatacgcactaaaatcccacaagtaaaaattggagagaataaagtgtacgcaaatgttaacatccatcgggaaccttaattttacattgcttaggcaaattcattgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="35206" stop="8113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10416" g_stop="10385" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.719"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10384" i_stop="8679" i_length="1706">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8678" g_stop="8413" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="300" r_length="268" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E353041" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10416" e_stop="10385"/>
          <exon e_start="8678" e_stop="8413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTTGTTGCTTCTTTTTTCCTTTTTTTGTTGTATTTTGACAACCTTTGATTCGATGTTTCGCCAGAGTTTTCGTTTGAATCCTTCTGAAGATTCATAGAATCATGCAAAGACTTTTTTCTATTTTCTTTCCAATTTTCATCGTCGGAATCATATATCCTTCTATTAATTAACGGATCCATTACTATGATGTAATAGAACAATTAACAAAAATAAAAAAGAGAAGAATATACGAATTGATGATGGATTAATAATAAAAAGATGCTGGGTTCAAACTATTACAGATTAGGAAGAAATAGACGATGATGGATTAAGAATAAAAAGAAGAAAAGAAAAAAATGTAATGGATTAAGATGAATGAAGATGATTAAGGAAAAAAAAAGAACTGAAACTTGATGGAGTAAGAAGAAGACGGTAGAAGTTAATGGAAGTTGTCCTGCTTCCTAATATTTTTACTTTTTTAATTTTCAAATTTTTCAAATTTTGAAATTCAAAATTTCAAAATTTGGTCTTTTAATTAAAATTAATTAAATTTAAAAATTTAAAAATTCAAAATCAAAAAGCTGATTAAAAAGTTGAGTGTTTAAATGGATAAAATTTAAAATTAAAAAACTGATTTAAGAGGTTGAGTGTTTTAATGGAGAAAAAATAGGCATTAAAATGGGTAAATGTGTATTATAAGAGAGAGAATGTAATGTATCTAAAAACTTACAATAAAATAAAAAAAAAGAAAATTATGTAATATTTAAAAAAAGTAGGAAAAATTGGAGAATATAAAAATTATAGTTGTGTATTTAAGTTATTTTTCCTACATGTTCTAATAGTTTTATCAATTTTCAAAGTGGGTTTTCAACTTCTCATAAAGCCCATTGGGCCCATGATGAGTTGGGCTTCCATTTGAATGACGATTCAATGTCAACAAACAAGGCTCATATTACCGATCTTCAGCTTGAATAAAAGAGGATATACACACGGTAATCGCCTTATCGGTTCGTATAAAATTAGTCAATTTGCGATGAAGCATCACCTATACAACGTACTTTTTCATGATGTTTCCACACTATACAACATACTTTGTTATATAAGATCGAAATTGATAAAGAAATTAAAAATTTAATTCAACTCAATCTCAAGAACGAGCTCTTAAGATAATGATTGTCCATGTTAGGATCGAATTCCCCACACACTTAACGAATGAAGAACACAAGAACTTTAGAGAGAAAGAGATGAGAGAGAAAGAGAGAAATCAATGTTTCGTGGTAACACTCCGTGAGTAAACTTCCACGGCGGTGGATATATATATTAATAAATGAGAGTATTTTAGGTTACAGAGAATAAATGGAGAATAAATATATGAACATTAATATATGACAGTACATCAAATATTAATCAAGCTCCACAACGTAACAGTCCATACTATATAAAGAGACTATATCATTTCTAAATAGCAGATGTAGAAACTCAAGACAAGCTTAACTGACAATGAGAATCATATAGTTGTCGGAGTCAAGATTAAGAGTTTGAAGAATCTAAATTGATTTATTTAAGGTTCATAAGTTAATATACATTTAAAAAAAATAATTTTCTAACTCAACATAGGATCTATACGAAAAAGCCAGTGAATTCGTCCGAACCCATAAATCCCTAACATTCCCAACTTACTAGGGATCGAGGCACAATTATTATAGTTGGTGCGTGTAAGAAAAAATACATTAACGAATAACCGAACCCCAACAACTCAAAGAAAGTTTATTTAAATTCTCAAATACCAGAAATTACAAACGCACATAAAAAA--AAAAAATGTCAAACTTCACAAAGTGAAGCGAAACAATTCAAAACAAAATCAGGTAAAAATACATGCTCTTTTTTCTTAATTAGTCCCAACACTTCTCTAGCATACGCACTAAAATCCCACAAGTAGAAATTGGAGAGAATAGAGTGTACGCAGATGTTAACATCCATCGGGAACCTTAATTTTACATTGCTTAGGCAGATTCATTGCAG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAGAAAGTTTATTTAAATTCTCAAATACCAGAAATTACAAACGCACATAAAAAAAAAAAAAATGTCAAACTTCACAAAGTGAAGCGAAACAATTCAAAACAAAATCAGGTAAAAATACATGCTCTTTTTTCTTAATTAGTCCCAACACTTCTCTAGCATACGCACTAAAATCCCACAAGTAAAAATTGGAGAGAATAAAGTGTACGCAAATGTTAACATCCATCGGGAACCTTAATTTTACATTGCTTAGGCAAATTCATTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E307024" ref_strand="+" ref_description="SGN-E307024 [cLEY-15-C7]">
      <seq>aaaaatatttgccagcctgaaaatagcccacacccctcaagggcaatgcacaaacactcacacactttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcaactgaatctctccatattctcctccacctccgtcactaacggaaaaaaatctacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactctgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaaacaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatccatactctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="19558" stop="21739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19858" g_stop="20194" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20195" i_stop="21240" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21439" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="536" r_length="199" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E307024" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19858" e_stop="20194"/>
          <exon e_start="21241" e_stop="21439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATATTTGCCAGCCTGAAAATAGCCCACACCCCTCAAAGGCAAGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTA</genome_strand>
        <mrna_strand>AAAAATATTTGCCAGCCTGAAAATAGCCCACACCCCTCAAGGGCAATGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAACTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATCTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTCTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAACAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCCATACTCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E738857" ref_strand="+" ref_description="SGN-E738857 [LC15AH02]">
      <seq>acccctcaaaggcaaggcacaaacactcacacactttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcctcagacaggatggttttctatagatttcagcatcaaggatttggcacctgtcagcttgaaacaaggagtgtattcgcggtcgcctagatttgatggcactccccagcaaattcttactgtccaggatgtagctacccaagtcaaacctccaggattatggttgaatatccagcatgattccttctacagccagcacaatctgagtatgagaagctttgttgtttccctatctagaagtgttattgccaactatatttcatcacctgaggtgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="19589" stop="23348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19889" g_stop="20194" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20195" i_stop="21240" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21534" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="600" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21535" i_stop="22643" i_length="1109">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.223" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22644" g_stop="22759" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="716" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22760" i_stop="22946" i_length="187">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22947" g_stop="23048" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="818" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E738857" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19889" e_stop="20194"/>
          <exon e_start="21241" e_stop="21534"/>
          <exon e_start="22644" e_stop="22759"/>
          <exon e_start="22947" e_stop="23048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCCTCAAAGGCAAGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCTGTAAGATTAAATCGTGACCTTTTGTATCTTTTACTATATGCTTTTTATGGTCCTATATATGTGAATGGCTGTTTAGATCAGCAGTTACACCTAGTAAAGAACTTGTTTTGGGCAATGAGTTTACACTCCAAAGCGGCCTGTTTTACCTATCATATGTAATTGAGAGGCTTCTCCACTAGTTTTGTTTTACTTAATAAACCAATTGATTTCATGGATTTATTCATTTGGAATTATAAATGGTGCTTAGCTTCACTGTCTTTGTTTTGCCATTCATTTGCTGATCTGTGAAGGTGGTACAGTCACTGCTCTCTTTTCTTTTAATGCGGGACAGCCCAGGTTCTGGTGCCATACCATTATAGTGTGTCTAAAGCCATTATGTATCTGTATTTATTTGGTTCTAAAACAATTCTGATATGTTGGGACTGCGTTTATCATTTCTTTTACATACTTATGCTTCGAGAAGGGTTGATAGATGAAAAACTTAACCTAGGTTTTCATTTTGTGGAATAACTGTAGTCCTATCTTTTAAAAGTTTGACTCTCAGATCAAGTGCTAATTGGCAGTAAATCTGCATACTAATATGCTAGTATTGTTTGTATCTCTCTTTGTCCCAATTTGTATGACTTACTTTTTAGTCGGTCCCAAAAAGAATGACACATTTCTATATTAAGTAATAATTTAACTTTAAAATATCTATTTTTTTCTTAATGAAATGAAAAATAGCTAAACAAATTTCTATTTTTCATTTTAGACCACAAGTTTCGAAAGTCATCCTTTCTTTCTTAAACTTTGTGCTGAGTCAAACTACCTCACATAAAATGGGACGGAGGGAGAAATATATTTTGTCATAAAAAATTTTCTCCTCCCTCAACCACTATCTTATTTTATGTTTTTAAAAAATGTAGAATCAGATCACCTTAGAAAATGAGTTGCCCTGTGCATTTCCTTAGGACCCAAATAGATCATATATGCTTATGCCAAAACATGTTGCTGGTATAGTCTAGAGAATCTCTCATTAGAGTTGGACTTATTGTTATGGCTTGATGAAAGTTAGCCTCTGGTGATCTGAAATTCTACTAAAAAGAGATTAATCCTGATGCCTGGAACAGTGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAGGTATGCATTTGGTTACAGTATGCTTTTGGTACTTACTTGTTGCCTACTTTCAGTTTTTCAATCTCTAAGAATCTAAGAGGAACAGTTTAATTATCATACCATGCGTTGCTGCATTTGATGTGTGGTATGTTAAGTTTGTGTAGGCCTAACAATTATTTAACTCATTCTTCTGTAAATACATTTCCAGCATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCTAGAAGTGTTATTGCCAACTATATTTCATCACCTGAGGTGAAT</genome_strand>
        <mrna_strand>ACCCCTCAAAGGCAAGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAG...........................................................................................................................................................................................CATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCTAGAAGTGTTATTGCCAACTATATTTCATCACCTGAGGTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E315692" ref_strand="+" ref_description="SGN-E315692 [cTOA-26-C5]">
      <seq>cctcaaaggcaaggcacaaacactcacacactttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcctcagacaggatggttttctatagatttcagcatcaaggaattgggcactgtcagcttgaaacaaggagtgtattcgcggtcgcctagatttgatggcactccccagcaaattcttactgtccaggatgtagctacccaagtcaaacctccaggattatggttgaatatccagcatgattccttctacagccagcacaatctgagtatgagaagctttgttgttcccctatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="19592" stop="23306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19892" g_stop="20194" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20195" i_stop="21240" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21534" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="598" r_length="294" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21535" i_stop="22643" i_length="1109">
            <donor d_prob="0.980" d_score="0.92"/>
            <acceptor a_prob="0.223" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22644" g_stop="22759" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="714" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22760" i_stop="22946" i_length="187">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22947" g_stop="23006" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="774" r_length="60" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E315692" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19892" e_stop="20194"/>
          <exon e_start="21241" e_stop="21534"/>
          <exon e_start="22644" e_stop="22759"/>
          <exon e_start="22947" e_stop="23006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAAAGGCAAGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGG-AAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCTGTAAGATTAAATCGTGACCTTTTGTATCTTTTACTATATGCTTTTTATGGTCCTATATATGTGAATGGCTGTTTAGATCAGCAGTTACACCTAGTAAAGAACTTGTTTTGGGCAATGAGTTTACACTCCAAAGCGGCCTGTTTTACCTATCATATGTAATTGAGAGGCTTCTCCACTAGTTTTGTTTTACTTAATAAACCAATTGATTTCATGGATTTATTCATTTGGAATTATAAATGGTGCTTAGCTTCACTGTCTTTGTTTTGCCATTCATTTGCTGATCTGTGAAGGTGGTACAGTCACTGCTCTCTTTTCTTTTAATGCGGGACAGCCCAGGTTCTGGTGCCATACCATTATAGTGTGTCTAAAGCCATTATGTATCTGTATTTATTTGGTTCTAAAACAATTCTGATATGTTGGGACTGCGTTTATCATTTCTTTTACATACTTATGCTTCGAGAAGGGTTGATAGATGAAAAACTTAACCTAGGTTTTCATTTTGTGGAATAACTGTAGTCCTATCTTTTAAAAGTTTGACTCTCAGATCAAGTGCTAATTGGCAGTAAATCTGCATACTAATATGCTAGTATTGTTTGTATCTCTCTTTGTCCCAATTTGTATGACTTACTTTTTAGTCGGTCCCAAAAAGAATGACACATTTCTATATTAAGTAATAATTTAACTTTAAAATATCTATTTTTTTCTTAATGAAATGAAAAATAGCTAAACAAATTTCTATTTTTCATTTTAGACCACAAGTTTCGAAAGTCATCCTTTCTTTCTTAAACTTTGTGCTGAGTCAAACTACCTCACATAAAATGGGACGGAGGGAGAAATATATTTTGTCATAAAAAATTTTCTCCTCCCTCAACCACTATCTTATTTTATGTTTTTAAAAAATGTAGAATCAGATCACCTTAGAAAATGAGTTGCCCTGTGCATTTCCTTAGGACCCAAATAGATCATATATGCTTATGCCAAAACATGTTGCTGGTATAGTCTAGAGAATCTCTCATTAGAGTTGGACTTATTGTTATGGCTTGATGAAAGTTAGCCTCTGGTGATCTGAAATTCTACTAAAAAGAGATTAATCCTGATGCCTGGAACAGTGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAGGTATGCATTTGGTTACAGTATGCTTTTGGTACTTACTTGTTGCCTACTTTCAGTTTTTCAATCTCTAAGAATCTAAGAGGAACAGTTTAATTATCATACCATGCGTTGCTGCATTTGATGTGTGGTATGTTAAGTTTGTGTAGGCCTAACAATTATTTAACTCATTCTTCTGTAAATACATTTCCAGCATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCT</genome_strand>
        <mrna_strand>CCTCAAAGGCAAGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGAATTGGGCACTGTCAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAG...........................................................................................................................................................................................CATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTCCCCTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E313423" ref_strand="+" ref_description="SGN-E313423 [cTOA-13-G20]">
      <seq>tcaaaggcaaggcacaaacactcacacactttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="19594" stop="21778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19894" g_stop="20194" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20195" i_stop="21240" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21478" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="540" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E313423" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19894" e_stop="20194"/>
          <exon e_start="21241" e_stop="21478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGGCAAGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGG-AAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCC</genome_strand>
        <mrna_strand>TCAAAGGCAAGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E201049" ref_strand="+" ref_description="SGN-E201049 [cLEC-5-N4]">
      <seq>aggcaaggcacaaacactcacacactttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="19598" stop="21603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19898" g_stop="20194" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20195" i_stop="21240" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21303" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="360" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E201049" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19898" e_stop="20194"/>
          <exon e_start="21241" e_stop="21303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCAAGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTA</genome_strand>
        <mrna_strand>AGGCAAGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E310657" ref_strand="+" ref_description="SGN-E310657 [cLEZ-19-F22]">
      <seq>aggcacaaacactcacacactttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcctcagacaggatggttttctatagatttcagcatcaaggatttggcacctgtcagcttgaaacaaggagtgtattcgcggtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="19603" stop="22969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19903" g_stop="20194" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20195" i_stop="21240" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21534" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="586" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21535" i_stop="22643" i_length="1109">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.223" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22644" g_stop="22669" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="612" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E310657" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19903" e_stop="20194"/>
          <exon e_start="21241" e_stop="21534"/>
          <exon e_start="22644" e_stop="22669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCTGTAAGATTAAATCGTGACCTTTTGTATCTTTTACTATATGCTTTTTATGGTCCTATATATGTGAATGGCTGTTTAGATCAGCAGTTACACCTAGTAAAGAACTTGTTTTGGGCAATGAGTTTACACTCCAAAGCGGCCTGTTTTACCTATCATATGTAATTGAGAGGCTTCTCCACTAGTTTTGTTTTACTTAATAAACCAATTGATTTCATGGATTTATTCATTTGGAATTATAAATGGTGCTTAGCTTCACTGTCTTTGTTTTGCCATTCATTTGCTGATCTGTGAAGGTGGTACAGTCACTGCTCTCTTTTCTTTTAATGCGGGACAGCCCAGGTTCTGGTGCCATACCATTATAGTGTGTCTAAAGCCATTATGTATCTGTATTTATTTGGTTCTAAAACAATTCTGATATGTTGGGACTGCGTTTATCATTTCTTTTACATACTTATGCTTCGAGAAGGGTTGATAGATGAAAAACTTAACCTAGGTTTTCATTTTGTGGAATAACTGTAGTCCTATCTTTTAAAAGTTTGACTCTCAGATCAAGTGCTAATTGGCAGTAAATCTGCATACTAATATGCTAGTATTGTTTGTATCTCTCTTTGTCCCAATTTGTATGACTTACTTTTTAGTCGGTCCCAAAAAGAATGACACATTTCTATATTAAGTAATAATTTAACTTTAAAATATCTATTTTTTTCTTAATGAAATGAAAAATAGCTAAACAAATTTCTATTTTTCATTTTAGACCACAAGTTTCGAAAGTCATCCTTTCTTTCTTAAACTTTGTGCTGAGTCAAACTACCTCACATAAAATGGGACGGAGGGAGAAATATATTTTGTCATAAAAAATTTTCTCCTCCCTCAACCACTATCTTATTTTATGTTTTTAAAAAATGTAGAATCAGATCACCTTAGAAAATGAGTTGCCCTGTGCATTTCCTTAGGACCCAAATAGATCATATATGCTTATGCCAAAACATGTTGCTGGTATAGTCTAGAGAATCTCTCATTAGAGTTGGACTTATTGTTATGGCTTGATGAAAGTTAGCCTCTGGTGATCTGAAATTCTACTAAAAAGAGATTAATCCTGATGCCTGGAACAGTGAAACAAGGAGTGTATTCGCGGTCG</genome_strand>
        <mrna_strand>AGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACAAGGAGTGTATTCGCGGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E312685" ref_strand="+" ref_description="SGN-E312685 [cTOA-8-A3]">
      <seq>gcacaaacactcacacactttctctctctatctatctgcggtcaaagtgtcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgtactgatttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttttgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="19605" stop="21777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19905" g_stop="20194" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20195" i_stop="21240" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21477" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="527" r_length="237" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E312685" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19905" e_stop="20194"/>
          <exon e_start="21241" e_stop="21477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTC</genome_strand>
        <mrna_strand>GCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCGGTCAAAGTGTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTACTGATTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTTTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E324257" ref_strand="+" ref_description="SGN-E324257 [cTOC-4-G6]">
      <seq>gcacaaacactcacacactttgtctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggagttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="19605" stop="21749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19905" g_stop="20194" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20195" i_stop="21240" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21449" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="499" r_length="209" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E324257" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19905" e_stop="20194"/>
          <exon e_start="21241" e_stop="21449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGG</genome_strand>
        <mrna_strand>GCACAAACACTCACACACTTTGTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGAGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E305177" ref_strand="+" ref_description="SGN-E305177 [cLEY-18-D4]">
      <seq>acaaacactcacacactttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttatatgtctcctggaactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattatctgggttacttgctgattcaagctataatgcctacatgttggcacaagcgattagctcggctgattgggttgctcggtgtgatgttcaactcacacaagacggcgttggcattcgctttcctgatatcaagcttaacaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="19607" stop="21718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19907" g_stop="20194" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20195" i_stop="21240" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21418" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="466" r_length="178" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E305177" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19907" e_stop="20194"/>
          <exon e_start="21241" e_stop="21418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGC</genome_strand>
        <mrna_strand>ACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTATATGTCTCCTGGAACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTATCTGGGTTACTTGCTGATTCAAGCTATAATGCCTACATGTTGGCACAAGCGATTAGCTCGGCTGATTGGGTTGCTCGGTGTGATGTTCAACTCACACAAGACGGCGTTGGCATTCGCTTTCCTGATATCAAGCTTAACAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E305964" ref_strand="+" ref_description="SGN-E305964 [cLEY-17-K24]">
      <seq>acaaacactcacacactttctctcggtatctatctgctggcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="19607" stop="21673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19907" g_stop="20194" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20195" i_stop="21240" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21373" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="421" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E305964" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19907" e_stop="20194"/>
          <exon e_start="21241" e_stop="21373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAA</genome_strand>
        <mrna_strand>ACAAACACTCACACACTTTCTCTCGGTATCTATCTGCTGGCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E442992" ref_strand="+" ref_description="SGN-E442992 [cSTA-35-F4]">
      <seq>caaacactcacacactttctctctctatctatctggtctcaaagtctccttaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccattctcctccacctccgtcacaaccggaaaaaaattccgccggaaaacgattctccggctaagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctgctactttgttgctcagctgcatttgttgctgctcaaagatctagcaatgtaacctccaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctataatgcctatttgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacattgatgctctttaccaaaacaggaataacaactactcggtgaatggaattcctcagacaggatggttttctatagatttcaacatcaaggatttggcgcctgtcagcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="19608" stop="21834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19908" g_stop="20194" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20195" i_stop="21240" i_length="1046">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21534" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="578" r_length="294" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E442992" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19908" e_stop="20194"/>
          <exon e_start="21241" e_stop="21534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT</genome_strand>
        <mrna_strand>CAAACACTCACACACTTTCTCTCTCTATCTATCTGGTCTCAAAGTCTCCTTAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCC--ATTCTCCTCCACCTCCGTCACAACCGGAAAAAAA-TTCCGCCGGAAAACGATTCTCCGGCTAAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGCTACTTTGTTGCTCAGCTGCATTTGTTGCTGCTCAAAGATCTAGCAATGTAACCTCCAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTATAATGCCTATTTGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATTGATGCTCTTTACCAAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAACATCAAGGATTTGGCGCCTGTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E314560" ref_strand="+" ref_description="SGN-E314560 [cTOA-20-M9]">
      <seq>aaacactcacacactttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcctcagacaggatggttttctatagatttcagcatcaaggatttggcacctgtcagcttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="19609" stop="21838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19909" g_stop="20194" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20195" i_stop="21240" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21534" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="581" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E314560" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19909" e_stop="20194"/>
          <exon e_start="21241" e_stop="21534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGG-AAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT</genome_strand>
        <mrna_strand>AAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E317751" ref_strand="+" ref_description="SGN-E317751 [cTOA-30-K15]">
      <seq>aaacactcacacactttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcctcagacaggatggttttctatagatttcagcatcaaggatttggcacctgtcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="19609" stop="21834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19909" g_stop="20194" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20195" i_stop="21240" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21534" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="581" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E317751" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19909" e_stop="20194"/>
          <exon e_start="21241" e_stop="21534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGG-AAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT</genome_strand>
        <mrna_strand>AAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E207397" ref_strand="+" ref_description="SGN-E207397 [cLEC-36-M2]">
      <seq>acactcacacactttctctctctatctatctgctctcaaagtctcctgaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgagtcaagctttaatgcctacatgttggcacaagcaatgagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcctcagacaggatgggtttctatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="19611" stop="21801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19911" g_stop="20194" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20195" i_stop="21240" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21501" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="545" r_length="261" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E207397" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19911" e_stop="20194"/>
          <exon e_start="21241" e_stop="21501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAG</genome_strand>
        <mrna_strand>ACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTGAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGAGTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATGAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGGTTTCTATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E337990" ref_strand="+" ref_description="SGN-E337990 [cTOE-14-O9]">
      <seq>cacacactttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="19616" stop="21578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19916" g_stop="20194" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20195" i_stop="21240" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21278" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="317" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E337990" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19916" e_stop="20194"/>
          <exon e_start="21241" e_stop="21278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCT</genome_strand>
        <mrna_strand>CACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E373208" ref_strand="+" ref_description="SGN-E373208 [TUS-32-O17]">
      <seq>cacactttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcctcagacaggatggttttctatagatttcagcatcaaggatttggcacctgtcagcttgaaacaaggagtgtattcgcggtcgcctagatttgatggcactccccagcaaattcttactgtccaggatgtagctaccccagtcaaacctccaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="19618" stop="23042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19918" g_stop="20194" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20195" i_stop="21240" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21534" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="571" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21535" i_stop="22643" i_length="1109">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.223" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22644" g_stop="22742" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="670" r_length="99" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E373208" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19918" e_stop="20194"/>
          <exon e_start="21241" e_stop="21534"/>
          <exon e_start="22644" e_stop="22742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCTGTAAGATTAAATCGTGACCTTTTGTATCTTTTACTATATGCTTTTTATGGTCCTATATATGTGAATGGCTGTTTAGATCAGCAGTTACACCTAGTAAAGAACTTGTTTTGGGCAATGAGTTTACACTCCAAAGCGGCCTGTTTTACCTATCATATGTAATTGAGAGGCTTCTCCACTAGTTTTGTTTTACTTAATAAACCAATTGATTTCATGGATTTATTCATTTGGAATTATAAATGGTGCTTAGCTTCACTGTCTTTGTTTTGCCATTCATTTGCTGATCTGTGAAGGTGGTACAGTCACTGCTCTCTTTTCTTTTAATGCGGGACAGCCCAGGTTCTGGTGCCATACCATTATAGTGTGTCTAAAGCCATTATGTATCTGTATTTATTTGGTTCTAAAACAATTCTGATATGTTGGGACTGCGTTTATCATTTCTTTTACATACTTATGCTTCGAGAAGGGTTGATAGATGAAAAACTTAACCTAGGTTTTCATTTTGTGGAATAACTGTAGTCCTATCTTTTAAAAGTTTGACTCTCAGATCAAGTGCTAATTGGCAGTAAATCTGCATACTAATATGCTAGTATTGTTTGTATCTCTCTTTGTCCCAATTTGTATGACTTACTTTTTAGTCGGTCCCAAAAAGAATGACACATTTCTATATTAAGTAATAATTTAACTTTAAAATATCTATTTTTTTCTTAATGAAATGAAAAATAGCTAAACAAATTTCTATTTTTCATTTTAGACCACAAGTTTCGAAAGTCATCCTTTCTTTCTTAAACTTTGTGCTGAGTCAAACTACCTCACATAAAATGGGACGGAGGGAGAAATATATTTTGTCATAAAAAATTTTCTCCTCCCTCAACCACTATCTTATTTTATGTTTTTAAAAAATGTAGAATCAGATCACCTTAGAAAATGAGTTGCCCTGTGCATTTCCTTAGGACCCAAATAGATCATATATGCTTATGCCAAAACATGTTGCTGGTATAGTCTAGAGAATCTCTCATTAGAGTTGGACTTATTGTTATGGCTTGATGAAAGTTAGCCTCTGGTGATCTGAAATTCTACTAAAAAGAGATTAATCCTGATGCCTGGAACAGTGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGAT</genome_strand>
        <mrna_strand>CACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCCAGTCAAACCTCCAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E307201" ref_strand="+" ref_description="SGN-E307201 [cLEY-15-L1]">
      <seq>acactttctctctctatctatctgctctcaaagtctcctgaacttggcgatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaatttctcagacaggatggttttctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="19619" stop="21800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19919" g_stop="20194" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20195" i_stop="21240" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21500" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="536" r_length="260" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E307201" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19919" e_stop="20194"/>
          <exon e_start="21241" e_stop="21500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATA</genome_strand>
        <mrna_strand>ACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTGAACTTGGCGATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTTCTCAGACAGGATGGTTTTCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E737638" ref_strand="+" ref_description="SGN-E737638 [LC10CF09]">
      <seq>cactttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcctcagacaggatggttttctatagatttcagcatcaaggatttggcacctgtcagcttgaaacaaggagtgtattcgcggtcgcctagatttgatggcactccccagcaaattcttactgtccaggatgtagctacccaagtcaaacctccaggattatggttgaatatccagcatgattccttctacagccagcacaatctgagtatgagaagctttgttgtttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="19620" stop="23301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19920" g_stop="20194" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20195" i_stop="21240" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21534" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="569" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21535" i_stop="22643" i_length="1109">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.223" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22644" g_stop="22759" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="685" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22760" i_stop="22946" i_length="187">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22947" g_stop="23001" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="740" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E737638" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19920" e_stop="20194"/>
          <exon e_start="21241" e_stop="21534"/>
          <exon e_start="22644" e_stop="22759"/>
          <exon e_start="22947" e_stop="23001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCTGTAAGATTAAATCGTGACCTTTTGTATCTTTTACTATATGCTTTTTATGGTCCTATATATGTGAATGGCTGTTTAGATCAGCAGTTACACCTAGTAAAGAACTTGTTTTGGGCAATGAGTTTACACTCCAAAGCGGCCTGTTTTACCTATCATATGTAATTGAGAGGCTTCTCCACTAGTTTTGTTTTACTTAATAAACCAATTGATTTCATGGATTTATTCATTTGGAATTATAAATGGTGCTTAGCTTCACTGTCTTTGTTTTGCCATTCATTTGCTGATCTGTGAAGGTGGTACAGTCACTGCTCTCTTTTCTTTTAATGCGGGACAGCCCAGGTTCTGGTGCCATACCATTATAGTGTGTCTAAAGCCATTATGTATCTGTATTTATTTGGTTCTAAAACAATTCTGATATGTTGGGACTGCGTTTATCATTTCTTTTACATACTTATGCTTCGAGAAGGGTTGATAGATGAAAAACTTAACCTAGGTTTTCATTTTGTGGAATAACTGTAGTCCTATCTTTTAAAAGTTTGACTCTCAGATCAAGTGCTAATTGGCAGTAAATCTGCATACTAATATGCTAGTATTGTTTGTATCTCTCTTTGTCCCAATTTGTATGACTTACTTTTTAGTCGGTCCCAAAAAGAATGACACATTTCTATATTAAGTAATAATTTAACTTTAAAATATCTATTTTTTTCTTAATGAAATGAAAAATAGCTAAACAAATTTCTATTTTTCATTTTAGACCACAAGTTTCGAAAGTCATCCTTTCTTTCTTAAACTTTGTGCTGAGTCAAACTACCTCACATAAAATGGGACGGAGGGAGAAATATATTTTGTCATAAAAAATTTTCTCCTCCCTCAACCACTATCTTATTTTATGTTTTTAAAAAATGTAGAATCAGATCACCTTAGAAAATGAGTTGCCCTGTGCATTTCCTTAGGACCCAAATAGATCATATATGCTTATGCCAAAACATGTTGCTGGTATAGTCTAGAGAATCTCTCATTAGAGTTGGACTTATTGTTATGGCTTGATGAAAGTTAGCCTCTGGTGATCTGAAATTCTACTAAAAAGAGATTAATCCTGATGCCTGGAACAGTGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAGGTATGCATTTGGTTACAGTATGCTTTTGGTACTTACTTGTTGCCTACTTTCAGTTTTTCAATCTCTAAGAATCTAAGAGGAACAGTTTAATTATCATACCATGCGTTGCTGCATTTGATGTGTGGTATGTTAAGTTTGTGTAGGCCTAACAATTATTTAACTCATTCTTCTGTAAATACATTTCCAGCATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCC</genome_strand>
        <mrna_strand>CACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAG...........................................................................................................................................................................................CATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E444515" ref_strand="+" ref_description="SGN-E444515 [cSTA-43-O3]">
      <seq>ctttctctctctatctatctggactcaacgtctccttaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcacaaccggaaaaaaatccgccggaaaacgattctccggctaagctcgccggaaatgaggaaaatgcgtcctgttttatgtctcctgctactttgttgctcaactgcatttgttgctgctcaaagatctagcaatgtaacctctaaatggagaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagttttaatgcctatatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgattctctctaccaaaacaagaataataactactcggtgaatggaattcctcaaacaggatggttttctatagatttcaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="19622" stop="21811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19922" g_stop="20194" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20195" i_stop="21240" i_length="1046">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21511" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="542" r_length="271" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E444515" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19922" e_stop="20194"/>
          <exon e_start="21241" e_stop="21511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCAT</genome_strand>
        <mrna_strand>CTTTCTCTCTCTATCTATCTGGACTCAACGTCTCCTTAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACAACCGGAAAAAAA--TCCGCCGGAAAACGATTCTCCGGCTAAGCTCGCCGGAAATGAGGAAAATGCGTCCTGTTTTATGTCTCCTGCTACTTTGTTGCTCAACTGCATTTGTTGCTGCTCAAAGATCTAGCAATGTAACCTCTAAATGGAGAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGTTTTAATGCCTATATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATTCTCTCTACCAAAACAAGAATAATAACTACTCGGTGAATGGAATTCCTCAAACAGGATGGTTTTCTATAGATTTCAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E311591" ref_strand="+" ref_description="SGN-E311591 [cLEZ-9-A1]">
      <seq>tttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcctcagacaggatggttttctatagatttcagcatcaaggatttggcacctgtcagcttgaaacaaggagtgtattcgcggtcgcctagatttgatggcactccccagcaaattcttactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="19623" stop="23007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19923" g_stop="20194" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20195" i_stop="21240" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21534" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="566" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21535" i_stop="22643" i_length="1109">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.223" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22644" g_stop="22707" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="630" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E311591" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19923" e_stop="20194"/>
          <exon e_start="21241" e_stop="21534"/>
          <exon e_start="22644" e_stop="22707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCTGTAAGATTAAATCGTGACCTTTTGTATCTTTTACTATATGCTTTTTATGGTCCTATATATGTGAATGGCTGTTTAGATCAGCAGTTACACCTAGTAAAGAACTTGTTTTGGGCAATGAGTTTACACTCCAAAGCGGCCTGTTTTACCTATCATATGTAATTGAGAGGCTTCTCCACTAGTTTTGTTTTACTTAATAAACCAATTGATTTCATGGATTTATTCATTTGGAATTATAAATGGTGCTTAGCTTCACTGTCTTTGTTTTGCCATTCATTTGCTGATCTGTGAAGGTGGTACAGTCACTGCTCTCTTTTCTTTTAATGCGGGACAGCCCAGGTTCTGGTGCCATACCATTATAGTGTGTCTAAAGCCATTATGTATCTGTATTTATTTGGTTCTAAAACAATTCTGATATGTTGGGACTGCGTTTATCATTTCTTTTACATACTTATGCTTCGAGAAGGGTTGATAGATGAAAAACTTAACCTAGGTTTTCATTTTGTGGAATAACTGTAGTCCTATCTTTTAAAAGTTTGACTCTCAGATCAAGTGCTAATTGGCAGTAAATCTGCATACTAATATGCTAGTATTGTTTGTATCTCTCTTTGTCCCAATTTGTATGACTTACTTTTTAGTCGGTCCCAAAAAGAATGACACATTTCTATATTAAGTAATAATTTAACTTTAAAATATCTATTTTTTTCTTAATGAAATGAAAAATAGCTAAACAAATTTCTATTTTTCATTTTAGACCACAAGTTTCGAAAGTCATCCTTTCTTTCTTAAACTTTGTGCTGAGTCAAACTACCTCACATAAAATGGGACGGAGGGAGAAATATATTTTGTCATAAAAAATTTTCTCCTCCCTCAACCACTATCTTATTTTATGTTTTTAAAAAATGTAGAATCAGATCACCTTAGAAAATGAGTTGCCCTGTGCATTTCCTTAGGACCCAAATAGATCATATATGCTTATGCCAAAACATGTTGCTGGTATAGTCTAGAGAATCTCTCATTAGAGTTGGACTTATTGTTATGGCTTGATGAAAGTTAGCCTCTGGTGATCTGAAATTCTACTAAAAAGAGATTAATCCTGATGCCTGGAACAGTGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGT</genome_strand>
        <mrna_strand>TTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E334593" ref_strand="+" ref_description="SGN-E334593 [cTOD-23-O13]">
      <seq>ttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcctcagacaggatggttttctatagatttcagcatcaaggatttggcacctgtcagcttgaaacaaggagtgtattcgcggtcgcctagatttgatggcactccccagcaaattcttactgtccaggatgtagctacccaagtcaaaccctcaggattatggttgaatatccagcatgattccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="19624" stop="23259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19924" g_stop="20194" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20195" i_stop="21240" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21534" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="565" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21535" i_stop="22643" i_length="1109">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.223" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22644" g_stop="22759" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="681" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22760" i_stop="22946" i_length="187">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.737" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22947" g_stop="22959" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="694" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E334593" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19924" e_stop="20194"/>
          <exon e_start="21241" e_stop="21534"/>
          <exon e_start="22644" e_stop="22759"/>
          <exon e_start="22947" e_stop="22959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCTGTAAGATTAAATCGTGACCTTTTGTATCTTTTACTATATGCTTTTTATGGTCCTATATATGTGAATGGCTGTTTAGATCAGCAGTTACACCTAGTAAAGAACTTGTTTTGGGCAATGAGTTTACACTCCAAAGCGGCCTGTTTTACCTATCATATGTAATTGAGAGGCTTCTCCACTAGTTTTGTTTTACTTAATAAACCAATTGATTTCATGGATTTATTCATTTGGAATTATAAATGGTGCTTAGCTTCACTGTCTTTGTTTTGCCATTCATTTGCTGATCTGTGAAGGTGGTACAGTCACTGCTCTCTTTTCTTTTAATGCGGGACAGCCCAGGTTCTGGTGCCATACCATTATAGTGTGTCTAAAGCCATTATGTATCTGTATTTATTTGGTTCTAAAACAATTCTGATATGTTGGGACTGCGTTTATCATTTCTTTTACATACTTATGCTTCGAGAAGGGTTGATAGATGAAAAACTTAACCTAGGTTTTCATTTTGTGGAATAACTGTAGTCCTATCTTTTAAAAGTTTGACTCTCAGATCAAGTGCTAATTGGCAGTAAATCTGCATACTAATATGCTAGTATTGTTTGTATCTCTCTTTGTCCCAATTTGTATGACTTACTTTTTAGTCGGTCCCAAAAAGAATGACACATTTCTATATTAAGTAATAATTTAACTTTAAAATATCTATTTTTTTCTTAATGAAATGAAAAATAGCTAAACAAATTTCTATTTTTCATTTTAGACCACAAGTTTCGAAAGTCATCCTTTCTTTCTTAAACTTTGTGCTGAGTCAAACTACCTCACATAAAATGGGACGGAGGGAGAAATATATTTTGTCATAAAAAATTTTCTCCTCCCTCAACCACTATCTTATTTTATGTTTTTAAAAAATGTAGAATCAGATCACCTTAGAAAATGAGTTGCCCTGTGCATTTCCTTAGGACCCAAATAGATCATATATGCTTATGCCAAAACATGTTGCTGGTATAGTCTAGAGAATCTCTCATTAGAGTTGGACTTATTGTTATGGCTTGATGAAAGTTAGCCTCTGGTGATCTGAAATTCTACTAAAAAGAGATTAATCCTGATGCCTGGAACAGTGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAGGTATGCATTTGGTTACAGTATGCTTTTGGTACTTACTTGTTGCCTACTTTCAGTTTTTCAATCTCTAAGAATCTAAGAGGAACAGTTTAATTATCATACCATGCGTTGCTGCATTTGATGTGTGGTATGTTAAGTTTGTGTAGGCCTAACAATTATTTAACTCATTCTTCTGTAAATACATTTCCAGCATGATTCCTTCT</genome_strand>
        <mrna_strand>TTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCCTCAGGATTATGGTTGAATATCCAG...........................................................................................................................................................................................CATGATTCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E335566" ref_strand="+" ref_description="SGN-E335566 [cTOE-2-B18]">
      <seq>tgctctcaaagtctcctcaacttgacaatcatcacactttttcttaacgcaaatcagctgaatctctccatattctcctccacctgcgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcaccggaaatgaggaaaatgcgttctgttttatgtctcctggcactttgttgctcagatgcatttgctgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggaatatcggggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcgggtgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttgtcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="19641" stop="21745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19941" g_stop="20194" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20195" i_stop="21240" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21445" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="459" r_length="205" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E335566" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19941" e_stop="20194"/>
          <exon e_start="21241" e_stop="21445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAA</genome_strand>
        <mrna_strand>TGCTCTCAAAGTCTCCTCAACTTGACAATCATCACACTTTTTCTTAACGCAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTGCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCACCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGCACTTTGTTGCTCAGATGCATTTGCTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGAATATCGGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGGTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTGTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E703955" ref_strand="+" ref_description="SGN-E703955 [FA22DG09]">
      <seq>ctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcctcagacaggatggttttctatagatttcagcatcaaggatttggcacctgtcagcttgaaacaaggagtgtattcgcggtcgcctagatttgatggcactccccagcaaattcttactgtccaggatgtagctacccaagtcaaacctccaggattatggttgaatatccagcatgattccttctacagccagcacaatctgagtatgagaagctttgttgtttccctatctagaagtgttattgccaactatatttcatcacctgaggtgaatttcctgcgaagtatcgcatcgcgattgaatccacgagtgacaaagcgcgttttccggtttctcaacgaagatgatattgagccatcaacaagtcaaacatatgggtctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="19645" stop="23458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19945" g_stop="20194" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20195" i_stop="21240" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21534" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="544" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21535" i_stop="22643" i_length="1109">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.223" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22644" g_stop="22759" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="660" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22760" i_stop="22946" i_length="187">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22947" g_stop="23158" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="872" r_length="212" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E703955" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19945" e_stop="20194"/>
          <exon e_start="21241" e_stop="21534"/>
          <exon e_start="22644" e_stop="22759"/>
          <exon e_start="22947" e_stop="23158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCTGTAAGATTAAATCGTGACCTTTTGTATCTTTTACTATATGCTTTTTATGGTCCTATATATGTGAATGGCTGTTTAGATCAGCAGTTACACCTAGTAAAGAACTTGTTTTGGGCAATGAGTTTACACTCCAAAGCGGCCTGTTTTACCTATCATATGTAATTGAGAGGCTTCTCCACTAGTTTTGTTTTACTTAATAAACCAATTGATTTCATGGATTTATTCATTTGGAATTATAAATGGTGCTTAGCTTCACTGTCTTTGTTTTGCCATTCATTTGCTGATCTGTGAAGGTGGTACAGTCACTGCTCTCTTTTCTTTTAATGCGGGACAGCCCAGGTTCTGGTGCCATACCATTATAGTGTGTCTAAAGCCATTATGTATCTGTATTTATTTGGTTCTAAAACAATTCTGATATGTTGGGACTGCGTTTATCATTTCTTTTACATACTTATGCTTCGAGAAGGGTTGATAGATGAAAAACTTAACCTAGGTTTTCATTTTGTGGAATAACTGTAGTCCTATCTTTTAAAAGTTTGACTCTCAGATCAAGTGCTAATTGGCAGTAAATCTGCATACTAATATGCTAGTATTGTTTGTATCTCTCTTTGTCCCAATTTGTATGACTTACTTTTTAGTCGGTCCCAAAAAGAATGACACATTTCTATATTAAGTAATAATTTAACTTTAAAATATCTATTTTTTTCTTAATGAAATGAAAAATAGCTAAACAAATTTCTATTTTTCATTTTAGACCACAAGTTTCGAAAGTCATCCTTTCTTTCTTAAACTTTGTGCTGAGTCAAACTACCTCACATAAAATGGGACGGAGGGAGAAATATATTTTGTCATAAAAAATTTTCTCCTCCCTCAACCACTATCTTATTTTATGTTTTTAAAAAATGTAGAATCAGATCACCTTAGAAAATGAGTTGCCCTGTGCATTTCCTTAGGACCCAAATAGATCATATATGCTTATGCCAAAACATGTTGCTGGTATAGTCTAGAGAATCTCTCATTAGAGTTGGACTTATTGTTATGGCTTGATGAAAGTTAGCCTCTGGTGATCTGAAATTCTACTAAAAAGAGATTAATCCTGATGCCTGGAACAGTGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAGGTATGCATTTGGTTACAGTATGCTTTTGGTACTTACTTGTTGCCTACTTTCAGTTTTTCAATCTCTAAGAATCTAAGAGGAACAGTTTAATTATCATACCATGCGTTGCTGCATTTGATGTGTGGTATGTTAAGTTTGTGTAGGCCTAACAATTATTTAACTCATTCTTCTGTAAATACATTTCCAGCATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCTAGAAGTGTTATTGCCAACTATATTTCATCACCTGAGGTGAATTTCCTGCGAAGTATCGCATCGCGATTGAATCCACGAGTGACAAAGCGCGTTTTCCGGTTTCTCAACGAAGATGATATTGAGCCATCAACAAGTCAAACATATGGTTCTCT</genome_strand>
        <mrna_strand>CTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAG...........................................................................................................................................................................................CATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCTAGAAGTGTTATTGCCAACTATATTTCATCACCTGAGGTGAATTTCCTGCGAAGTATCGCATCGCGATTGAATCCACGAGTGACAAAGCGCGTTTTCCGGTTTCTCAACGAAGATGATATTGAGCCATCAACAAGTCAAACATATGGGTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E410148" ref_strand="+" ref_description="SGN-E410148 [PPI-16-M19]">
      <seq>gtaaatcatcacactttttcttcacacaaatcagctgattctctccatattctcctccatctctgtcacaaccggaaaaaaattcctccggaaaacgattctccggctaagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctgctactttgttgctcagctgcatttgttgctgctcaaagatctagcaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctataatgcctatttgttggcacaagcaattagcttggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgatattgatactctctacctaaacaggaataacaactactcggtgaatggaattcctcagacaggatggttttctatagatttcaacatcaaggatttggcgcctgtcagcttgaaacaaggagtgtattcgaggtcgcctagatttgatggcactccccagcaaattcttactgtccaggatgtagctacccaagtcaaacctccaggattatggttgaatatccagcatgattccttctacagccagcacaatctgagtatgagaagctttgttatttccctatctagaagtgttattgccaactatatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="19664" stop="23332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19964" g_stop="20194" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20195" i_stop="21240" i_length="1046">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21534" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="524" r_length="294" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21535" i_stop="22643" i_length="1109">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.223" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22644" g_stop="22759" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="640" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22760" i_stop="22946" i_length="187">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22947" g_stop="23032" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="726" r_length="86" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E410148" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19964" e_stop="20194"/>
          <exon e_start="21241" e_stop="21534"/>
          <exon e_start="22644" e_stop="22759"/>
          <exon e_start="22947" e_stop="23032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCTGTAAGATTAAATCGTGACCTTTTGTATCTTTTACTATATGCTTTTTATGGTCCTATATATGTGAATGGCTGTTTAGATCAGCAGTTACACCTAGTAAAGAACTTGTTTTGGGCAATGAGTTTACACTCCAAAGCGGCCTGTTTTACCTATCATATGTAATTGAGAGGCTTCTCCACTAGTTTTGTTTTACTTAATAAACCAATTGATTTCATGGATTTATTCATTTGGAATTATAAATGGTGCTTAGCTTCACTGTCTTTGTTTTGCCATTCATTTGCTGATCTGTGAAGGTGGTACAGTCACTGCTCTCTTTTCTTTTAATGCGGGACAGCCCAGGTTCTGGTGCCATACCATTATAGTGTGTCTAAAGCCATTATGTATCTGTATTTATTTGGTTCTAAAACAATTCTGATATGTTGGGACTGCGTTTATCATTTCTTTTACATACTTATGCTTCGAGAAGGGTTGATAGATGAAAAACTTAACCTAGGTTTTCATTTTGTGGAATAACTGTAGTCCTATCTTTTAAAAGTTTGACTCTCAGATCAAGTGCTAATTGGCAGTAAATCTGCATACTAATATGCTAGTATTGTTTGTATCTCTCTTTGTCCCAATTTGTATGACTTACTTTTTAGTCGGTCCCAAAAAGAATGACACATTTCTATATTAAGTAATAATTTAACTTTAAAATATCTATTTTTTTCTTAATGAAATGAAAAATAGCTAAACAAATTTCTATTTTTCATTTTAGACCACAAGTTTCGAAAGTCATCCTTTCTTTCTTAAACTTTGTGCTGAGTCAAACTACCTCACATAAAATGGGACGGAGGGAGAAATATATTTTGTCATAAAAAATTTTCTCCTCCCTCAACCACTATCTTATTTTATGTTTTTAAAAAATGTAGAATCAGATCACCTTAGAAAATGAGTTGCCCTGTGCATTTCCTTAGGACCCAAATAGATCATATATGCTTATGCCAAAACATGTTGCTGGTATAGTCTAGAGAATCTCTCATTAGAGTTGGACTTATTGTTATGGCTTGATGAAAGTTAGCCTCTGGTGATCTGAAATTCTACTAAAAAGAGATTAATCCTGATGCCTGGAACAGTGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAGGTATGCATTTGGTTACAGTATGCTTTTGGTACTTACTTGTTGCCTACTTTCAGTTTTTCAATCTCTAAGAATCTAAGAGGAACAGTTTAATTATCATACCATGCGTTGCTGCATTTGATGTGTGGTATGTTAAGTTTGTGTAGGCCTAACAATTATTTAACTCATTCTTCTGTAAATACATTTCCAGCATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCTAGAAGTGTTATTGCCAACTATATTTC</genome_strand>
        <mrna_strand>GTAAATCATCACACTTTTTCTTCACACAAATCAGCTGATTCTCTCCATATTCTCCTCCATCTCTGTCACAACCGGAAAAAAATT-CCTCCGGAAAACGATTCTCCGGCTAAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGCTACTTTGTTGCTCAGCTGCATTTGTTGCTGCTCAAAGATCTAGCAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTATAATGCCTATTTGTTGGCACAAGCAATTAGCTTGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGATATTGATACTCTCTACCTAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAACATCAAGGATTTGGCGCCTGTCAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACAAGGAGTGTATTCGAGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAG...........................................................................................................................................................................................CATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTATTTCCCTATCTAGAAGTGTTATTGCCAACTATATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E417243" ref_strand="+" ref_description="SGN-E417243 [STM-25-G11]">
      <seq>cgggccccccctggctaagctcgttcgaaatgaggaaaatgcgttctgttttatgtctcctgctactttgttgctcagctgcatttgttgctgctcaaagatctagcaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctatatgttggcacaaacaattagcttggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatgctctataccaaaacaggaataacaactactcggtgaatggaattcctcaaacaggatggttttctatagatttcaacatcaaggatttggcgcctgtcagcttgaaacaaggagtgtattcgcggtcgcctagatttgatggcactccccagcaaattcttactgtccaggatgtagctacccaagtcaaacctccaggattatggttgaatatccagcatgattccttctacagccagcacaatctgagtatgagaagctttgttatttccctatctagaagtgttattgccaactatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="19783" stop="23331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20058" g_stop="20194" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.883"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20195" i_stop="21240" i_length="1046">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21534" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="432" r_length="294" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21535" i_stop="22643" i_length="1109">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.223" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22644" g_stop="22759" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="548" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22760" i_stop="22946" i_length="187">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22947" g_stop="23031" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="633" r_length="85" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E417243" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20058" e_stop="20194"/>
          <exon e_start="21241" e_stop="21534"/>
          <exon e_start="22644" e_stop="22759"/>
          <exon e_start="22947" e_stop="23031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGATTCTCC-GGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCTGTAAGATTAAATCGTGACCTTTTGTATCTTTTACTATATGCTTTTTATGGTCCTATATATGTGAATGGCTGTTTAGATCAGCAGTTACACCTAGTAAAGAACTTGTTTTGGGCAATGAGTTTACACTCCAAAGCGGCCTGTTTTACCTATCATATGTAATTGAGAGGCTTCTCCACTAGTTTTGTTTTACTTAATAAACCAATTGATTTCATGGATTTATTCATTTGGAATTATAAATGGTGCTTAGCTTCACTGTCTTTGTTTTGCCATTCATTTGCTGATCTGTGAAGGTGGTACAGTCACTGCTCTCTTTTCTTTTAATGCGGGACAGCCCAGGTTCTGGTGCCATACCATTATAGTGTGTCTAAAGCCATTATGTATCTGTATTTATTTGGTTCTAAAACAATTCTGATATGTTGGGACTGCGTTTATCATTTCTTTTACATACTTATGCTTCGAGAAGGGTTGATAGATGAAAAACTTAACCTAGGTTTTCATTTTGTGGAATAACTGTAGTCCTATCTTTTAAAAGTTTGACTCTCAGATCAAGTGCTAATTGGCAGTAAATCTGCATACTAATATGCTAGTATTGTTTGTATCTCTCTTTGTCCCAATTTGTATGACTTACTTTTTAGTCGGTCCCAAAAAGAATGACACATTTCTATATTAAGTAATAATTTAACTTTAAAATATCTATTTTTTTCTTAATGAAATGAAAAATAGCTAAACAAATTTCTATTTTTCATTTTAGACCACAAGTTTCGAAAGTCATCCTTTCTTTCTTAAACTTTGTGCTGAGTCAAACTACCTCACATAAAATGGGACGGAGGGAGAAATATATTTTGTCATAAAAAATTTTCTCCTCCCTCAACCACTATCTTATTTTATGTTTTTAAAAAATGTAGAATCAGATCACCTTAGAAAATGAGTTGCCCTGTGCATTTCCTTAGGACCCAAATAGATCATATATGCTTATGCCAAAACATGTTGCTGGTATAGTCTAGAGAATCTCTCATTAGAGTTGGACTTATTGTTATGGCTTGATGAAAGTTAGCCTCTGGTGATCTGAAATTCTACTAAAAAGAGATTAATCCTGATGCCTGGAACAGTGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAGGTATGCATTTGGTTACAGTATGCTTTTGGTACTTACTTGTTGCCTACTTTCAGTTTTTCAATCTCTAAGAATCTAAGAGGAACAGTTTAATTATCATACCATGCGTTGCTGCATTTGATGTGTGGTATGTTAAGTTTGTGTAGGCCTAACAATTATTTAACTCATTCTTCTGTAAATACATTTCCAGCATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCTAGAAGTGTTATTGCCAACTATATTT</genome_strand>
        <mrna_strand>CGGGCCCCCCCTGGCTAAGCTCGTTCGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGCTACTTTGTTGCTCAGCTGCATTTGTTGCTGCTCAAAGATCTAGCAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTATATGTTGGCACAAACAATTAGCTTGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATGCTCTATACCAAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAAACAGGATGGTTTTCTATAGATTTCAACATCAAGGATTTGGCGCCTGTCAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAG...........................................................................................................................................................................................CATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTATTTCCCTATCTAGAAGTGTTATTGCCAACTATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E305876" ref_strand="+" ref_description="SGN-E305876 [cLEY-17-G10]">
      <seq>ggaaatgatgaaaatgcgttctgttttatgtctcctgggactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggcgttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcctcacacaggatggttttctatagatttcagcatcaaggatttggcacctgtcagcttgaaacaaggagtgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="19782" stop="21840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20082" g_stop="20194" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20195" i_stop="21240" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21534" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="407" r_length="294" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E305876" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20082" e_stop="20194"/>
          <exon e_start="21241" e_stop="21534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT</genome_strand>
        <mrna_strand>GGAAATGATGAAAATGCGTTCTGTTTTATGTCTCCTGGGACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGCGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCACACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E277064" ref_strand="+" ref_description="SGN-E277064 [cLEN-22-L15]">
      <seq>aacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcctcagacaggatggttttctatagatttcagcatcaaggatttggcacctgtcagcttgaaacaaggagtgtattcgcggtcgcctagatttgatggcactccccagcaaattcttactgtccaggatgtagctacccaagtcaaacctccaggattatggttgaatatccagcatgattccttctacagccagcacaatctgagtatgagaagctttgttgtttccctatctagaagtgttattgccaactatatttcatcacctgaggtgaatttcctgcgaagtatcgcatcgcgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="19869" stop="23375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20169" g_stop="20194" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20195" i_stop="21240" i_length="1046">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21534" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="320" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21535" i_stop="22643" i_length="1109">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.223" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22644" g_stop="22759" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="436" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22760" i_stop="22946" i_length="187">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22947" g_stop="23075" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="565" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E277064" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20169" e_stop="20194"/>
          <exon e_start="21241" e_stop="21534"/>
          <exon e_start="22644" e_stop="22759"/>
          <exon e_start="22947" e_stop="23075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCTGTAAGATTAAATCGTGACCTTTTGTATCTTTTACTATATGCTTTTTATGGTCCTATATATGTGAATGGCTGTTTAGATCAGCAGTTACACCTAGTAAAGAACTTGTTTTGGGCAATGAGTTTACACTCCAAAGCGGCCTGTTTTACCTATCATATGTAATTGAGAGGCTTCTCCACTAGTTTTGTTTTACTTAATAAACCAATTGATTTCATGGATTTATTCATTTGGAATTATAAATGGTGCTTAGCTTCACTGTCTTTGTTTTGCCATTCATTTGCTGATCTGTGAAGGTGGTACAGTCACTGCTCTCTTTTCTTTTAATGCGGGACAGCCCAGGTTCTGGTGCCATACCATTATAGTGTGTCTAAAGCCATTATGTATCTGTATTTATTTGGTTCTAAAACAATTCTGATATGTTGGGACTGCGTTTATCATTTCTTTTACATACTTATGCTTCGAGAAGGGTTGATAGATGAAAAACTTAACCTAGGTTTTCATTTTGTGGAATAACTGTAGTCCTATCTTTTAAAAGTTTGACTCTCAGATCAAGTGCTAATTGGCAGTAAATCTGCATACTAATATGCTAGTATTGTTTGTATCTCTCTTTGTCCCAATTTGTATGACTTACTTTTTAGTCGGTCCCAAAAAGAATGACACATTTCTATATTAAGTAATAATTTAACTTTAAAATATCTATTTTTTTCTTAATGAAATGAAAAATAGCTAAACAAATTTCTATTTTTCATTTTAGACCACAAGTTTCGAAAGTCATCCTTTCTTTCTTAAACTTTGTGCTGAGTCAAACTACCTCACATAAAATGGGACGGAGGGAGAAATATATTTTGTCATAAAAAATTTTCTCCTCCCTCAACCACTATCTTATTTTATGTTTTTAAAAAATGTAGAATCAGATCACCTTAGAAAATGAGTTGCCCTGTGCATTTCCTTAGGACCCAAATAGATCATATATGCTTATGCCAAAACATGTTGCTGGTATAGTCTAGAGAATCTCTCATTAGAGTTGGACTTATTGTTATGGCTTGATGAAAGTTAGCCTCTGGTGATCTGAAATTCTACTAAAAAGAGATTAATCCTGATGCCTGGAACAGTGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAGGTATGCATTTGGTTACAGTATGCTTTTGGTACTTACTTGTTGCCTACTTTCAGTTTTTCAATCTCTAAGAATCTAAGAGGAACAGTTTAATTATCATACCATGCGTTGCTGCATTTGATGTGTGGTATGTTAAGTTTGTGTAGGCCTAACAATTATTTAACTCATTCTTCTGTAAATACATTTCCAGCATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCTAGAAGTGTTATTGCCAACTATATTTCATCACCTGAGGTGAATTTCCTGCGAAGTATCGCATCGCGATTG</genome_strand>
        <mrna_strand>AACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAG...........................................................................................................................................................................................CATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCTAGAAGTGTTATTGCCAACTATATTTCATCACCTGAGGTGAATTTCCTGCGAAGTATCGCATCGCGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E408702" ref_strand="+" ref_description="SGN-E408702 [PPI-11-N24]">
      <seq>gcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagttttaatgcctatatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaactatgcttctgacatcgattctctctaccaaaacaagaataataactactcggtgaatggaattcctcaaacaggatggttttctatagatttcaacatcaaggatttggcgcctgtcagcttgatacaaggagtgtattcacggtcgcctagatttgatggcactccccaacaaattcttactgtccaggatgtagctacccaagtcaaacctccaggattatggttgaatatccagcttgattccttctacagccagcacaatctgagtatgagaagctttgttatttccctatctagaagtgttattgccaactttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="20937" stop="23330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21101" g_stop="21103" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21104" i_stop="21240" i_length="137">
            <donor d_prob="0.879" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21534" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="297" r_length="294" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21535" i_stop="22643" i_length="1109">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.223" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22644" g_stop="22759" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="413" r_length="116" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22760" i_stop="22946" i_length="187">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22947" g_stop="23030" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="497" r_length="84" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E408702" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21101" e_stop="21103"/>
          <exon e_start="21241" e_stop="21534"/>
          <exon e_start="22644" e_stop="22759"/>
          <exon e_start="22947" e_stop="23030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCTGTAAGATTAAATCGTGACCTTTTGTATCTTTTACTATATGCTTTTTATGGTCCTATATATGTGAATGGCTGTTTAGATCAGCAGTTACACCTAGTAAAGAACTTGTTTTGGGCAATGAGTTTACACTCCAAAGCGGCCTGTTTTACCTATCATATGTAATTGAGAGGCTTCTCCACTAGTTTTGTTTTACTTAATAAACCAATTGATTTCATGGATTTATTCATTTGGAATTATAAATGGTGCTTAGCTTCACTGTCTTTGTTTTGCCATTCATTTGCTGATCTGTGAAGGTGGTACAGTCACTGCTCTCTTTTCTTTTAATGCGGGACAGCCCAGGTTCTGGTGCCATACCATTATAGTGTGTCTAAAGCCATTATGTATCTGTATTTATTTGGTTCTAAAACAATTCTGATATGTTGGGACTGCGTTTATCATTTCTTTTACATACTTATGCTTCGAGAAGGGTTGATAGATGAAAAACTTAACCTAGGTTTTCATTTTGTGGAATAACTGTAGTCCTATCTTTTAAAAGTTTGACTCTCAGATCAAGTGCTAATTGGCAGTAAATCTGCATACTAATATGCTAGTATTGTTTGTATCTCTCTTTGTCCCAATTTGTATGACTTACTTTTTAGTCGGTCCCAAAAAGAATGACACATTTCTATATTAAGTAATAATTTAACTTTAAAATATCTATTTTTTTCTTAATGAAATGAAAAATAGCTAAACAAATTTCTATTTTTCATTTTAGACCACAAGTTTCGAAAGTCATCCTTTCTTTCTTAAACTTTGTGCTGAGTCAAACTACCTCACATAAAATGGGACGGAGGGAGAAATATATTTTGTCATAAAAAATTTTCTCCTCCCTCAACCACTATCTTATTTTATGTTTTTAAAAAATGTAGAATCAGATCACCTTAGAAAATGAGTTGCCCTGTGCATTTCCTTAGGACCCAAATAGATCATATATGCTTATGCCAAAACATGTTGCTGGTATAGTCTAGAGAATCTCTCATTAGAGTTGGACTTATTGTTATGGCTTGATGAAAGTTAGCCTCTGGTGATCTGAAATTCTACTAAAAAGAGATTAATCCTGATGCCTGGAACAGTGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAGGTATGCATTTGGTTACAGTATGCTTTTGGTACTTACTTGTTGCCTACTTTCAGTTTTTCAATCTCTAAGAATCTAAGAGGAACAGTTTAATTATCATACCATGCGTTGCTGCATTTGATGTGTGGTATGTTAAGTTTGTGTAGGCCTAACAATTATTTAACTCATTCTTCTGTAAATACATTTCCAGCATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCTAGAAGTGTTATTGCCAACTATATT</genome_strand>
        <mrna_strand>GCG.........................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGTTTTAATGCCTATATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACTATGCTTCTGACATCGATTCTCTCTACCAAAACAAGAATAATAACTACTCGGTGAATGGAATTCCTCAAACAGGATGGTTTTCTATAGATTTCAACATCAAGGATTTGGCGCCTGTCAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATACAAGGAGTGTATTCACGGTCGCCTAGATTTGATGGCACTCCCCAACAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAG...........................................................................................................................................................................................CTTGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTATTTCCCTATCTAGAAGTGTTATTGCCAACTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E443380" ref_strand="+" ref_description="SGN-E443380 [cSTA-37-F21]">
      <seq>cctgattcaagttttaatgcctatatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgattctctctaccaaaacaagaataataactactcggtgaatggaattcctcaaacaggatggttttctatagatttcaacatcaaggatttggcgcctgtcagctgtaagattaaatcatgaccttttgtatcttttactatatgcttcagactttatggtcctatatatgtgaatggctgtttagatcagcagttacacctagtaaagaatttgttttgggcaatgagtttacactccaaagcagccggttttacctatcatatgtaattgagaggcttctccgctatttttgttttacttaataaaccaattgatttcagggatttactcatttggaattttaaatggtgcttagcttctctgtctttgttttgccattcttttgctggtctgtgaaggtggtacagtcactgccctcttttcttttgatgcgggacatcccaggttctggtgccataccattatagtgtgtctaaagccagtatgtacctgtatttatttggttctaaaacaattctgatatgttgggactgcatttatcatttcttttacatacttatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="20988" stop="22288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21288" g_stop="21988" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E443380" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21288" e_stop="21988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCTGTAAGATTAAATCGTGACCTTTTGTATCTTTTACTATATGCTT-----TTTATGGTCCTATATATGTGAATGGCTGTTTAGATCAGCAGTTACACCTAGTAAAGAACTTGTTTTGGGCAATGAGTTTACACTCCAAAGCGGCCTGTTTTACCTATCATATGTAATTGAGAGGCTTCTCCACTAGTTTTGTTTTACTTAATAAACCAATTGATTTCATGGATTTATTCATTTGGAATTATAAATGGTGCTTAGCTTCACTGTCTTTGTTTTGCCATTCATTTGCTGATCTGTGAAGGTGGTACAGTCACTGCTCTCTTTTCTTTTAATGCGGGACAGCCCAGGTTCTGGTGCCATACCATTATAGTGTGTCTAAAGCCATTATGTATCTGTATTTATTTGGTTCTAAAACAATTCTGATATGTTGGGACTGCGTTTATCATTTCTTTTACATACTTATGC</genome_strand>
        <mrna_strand>CCTGATTCAAGTTTTAATGCCTATATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATTCTCTCTACCAAAACAAGAATAATAACTACTCGGTGAATGGAATTCCTCAAACAGGATGGTTTTCTATAGATTTCAACATCAAGGATTTGGCGCCTGTCAGCTGTAAGATTAAATCATGACCTTTTGTATCTTTTACTATATGCTTCAGACTTTATGGTCCTATATATGTGAATGGCTGTTTAGATCAGCAGTTACACCTAGTAAAGAATTTGTTTTGGGCAATGAGTTTACACTCCAAAGCAGCCGGTTTTACCTATCATATGTAATTGAGAGGCTTCTCCGCTATTTTTGTTTTACTTAATAAACCAATTGATTTCAGGGATTTACTCATTTGGAATTTTAAATGGTGCTTAGCTTCTCTGTCTTTGTTTTGCCATTCTTTTGCTGGTCTGTGAAGGTGGTACAGTCACTGCCCTCTTTTCTTTTGATGCGGGACATCCCAGGTTCTGGTGCCATACCATTATAGTGTGTCTAAAGCCAGTATGTACCTGTATTTATTTGGTTCTAAAACAATTCTGATATGTTGGGACTGCATTTATCATTTCTTTTACATACTTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E314653" ref_strand="+" ref_description="SGN-E314653 [cTOA-20-D8]">
      <seq>gatttcagcatcaaggatttggcacctgtcagcttgaaacaaggagtgtattcgcggtcgcctagatttgatggcactccccagcaaattcttactgtccaggatgtagctacccaagtcaaacctccaggattatggttgaatatccagcatgattccttctacagccagcacaatctgagtatgagaagctttgttgtttccctatctagaagtgttattgccaactatatttcatcacctgaggtgaatttcctgcgaagtatcgcatcgcgattgaatccacgagtgacaaagcgcgttttccggtttctcaacgaagatgatattgagccatcaacaagtcaaacatatggttctctagtgaagaatctcacatttgttaaaacctttgccgctgggattcttgttcccaaacactatatctggccaacggacagcagcttgtacttgcagccacatacatcggttgtttcggacgctcataaggaaggacttgagatttatgcagccgactttgttaatgatggaccatttgcttataattatagctatgatcctgtagctgagtatttatcctttatagacaacgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="21201" stop="23689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21501" g_stop="21534" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21535" i_stop="22643" i_length="1109">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.223" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22644" g_stop="22759" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="150" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22760" i_stop="22946" i_length="187">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22947" g_stop="23389" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="593" r_length="443" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E314653" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21501" e_stop="21534"/>
          <exon e_start="22644" e_stop="22759"/>
          <exon e_start="22947" e_stop="23389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTCAGCATCAAGGATTTGGCACCTGTCAGCTGTAAGATTAAATCGTGACCTTTTGTATCTTTTACTATATGCTTTTTATGGTCCTATATATGTGAATGGCTGTTTAGATCAGCAGTTACACCTAGTAAAGAACTTGTTTTGGGCAATGAGTTTACACTCCAAAGCGGCCTGTTTTACCTATCATATGTAATTGAGAGGCTTCTCCACTAGTTTTGTTTTACTTAATAAACCAATTGATTTCATGGATTTATTCATTTGGAATTATAAATGGTGCTTAGCTTCACTGTCTTTGTTTTGCCATTCATTTGCTGATCTGTGAAGGTGGTACAGTCACTGCTCTCTTTTCTTTTAATGCGGGACAGCCCAGGTTCTGGTGCCATACCATTATAGTGTGTCTAAAGCCATTATGTATCTGTATTTATTTGGTTCTAAAACAATTCTGATATGTTGGGACTGCGTTTATCATTTCTTTTACATACTTATGCTTCGAGAAGGGTTGATAGATGAAAAACTTAACCTAGGTTTTCATTTTGTGGAATAACTGTAGTCCTATCTTTTAAAAGTTTGACTCTCAGATCAAGTGCTAATTGGCAGTAAATCTGCATACTAATATGCTAGTATTGTTTGTATCTCTCTTTGTCCCAATTTGTATGACTTACTTTTTAGTCGGTCCCAAAAAGAATGACACATTTCTATATTAAGTAATAATTTAACTTTAAAATATCTATTTTTTTCTTAATGAAATGAAAAATAGCTAAACAAATTTCTATTTTTCATTTTAGACCACAAGTTTCGAAAGTCATCCTTTCTTTCTTAAACTTTGTGCTGAGTCAAACTACCTCACATAAAATGGGACGGAGGGAGAAATATATTTTGTCATAAAAAATTTTCTCCTCCCTCAACCACTATCTTATTTTATGTTTTTAAAAAATGTAGAATCAGATCACCTTAGAAAATGAGTTGCCCTGTGCATTTCCTTAGGACCCAAATAGATCATATATGCTTATGCCAAAACATGTTGCTGGTATAGTCTAGAGAATCTCTCATTAGAGTTGGACTTATTGTTATGGCTTGATGAAAGTTAGCCTCTGGTGATCTGAAATTCTACTAAAAAGAGATTAATCCTGATGCCTGGAACAGTGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAGGTATGCATTTGGTTACAGTATGCTTTTGGTACTTACTTGTTGCCTACTTTCAGTTTTTCAATCTCTAAGAATCTAAGAGGAACAGTTTAATTATCATACCATGCGTTGCTGCATTTGATGTGTGGTATGTTAAGTTTGTGTAGGCCTAACAATTATTTAACTCATTCTTCTGTAAATACATTTCCAGCATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCTAGAAGTGTTATTGCCAACTATATTTCATCACCTGAGGTGAATTTCCTGCGAAGTATCGCATCGCGATTGAATCCACGAGTGACAAAGCGCGTTTTCCGGTTTCTCAACGAAGATGATATTGAGCCATCAACAAGTCAAACATATGGTTCTCTAGTGAAGAATCTCACATTTGTTAAAACCTTTGCCGCTGGGATTCTTGTTCCCAAACACTATATCTGGCCAACGGACAGCAGCTTGTACTTGCAGCCACATACATCGGTTGTTTCGGACGCTCATAAGGAAGGACTTGAGATTTATGCAGCCGACTTTGTTAATGATGTACCATTTGCTTATAATTATAGCTATGATCCTGTAGCTGAGTATTTATCCTTTATAGACAACGG</genome_strand>
        <mrna_strand>GATTTCAGCATCAAGGATTTGGCACCTGTCAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAG...........................................................................................................................................................................................CATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCTAGAAGTGTTATTGCCAACTATATTTCATCACCTGAGGTGAATTTCCTGCGAAGTATCGCATCGCGATTGAATCCACGAGTGACAAAGCGCGTTTTCCGGTTTCTCAACGAAGATGATATTGAGCCATCAACAAGTCAAACATATGGTTCTCTAGTGAAGAATCTCACATTTGTTAAAACCTTTGCCGCTGGGATTCTTGTTCCCAAACACTATATCTGGCCAACGGACAGCAGCTTGTACTTGCAGCCACATACATCGGTTGTTTCGGACGCTCATAAGGAAGGACTTGAGATTTATGCAGCCGACTTTGTTAATGATGGACCATTTGCTTATAATTATAGCTATGATCCTGTAGCTGAGTATTTATCCTTTATAGACAACGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E739478" ref_strand="+" ref_description="SGN-E739478 [LC17CE11]">
      <seq>atggttgaatatccagcatgattccttctacagccagcacaatctgagtatgagaagctttgttgtttccctatctagaagtgttattgccaactatatttcatcacctgaggtgaatttcctgcgaagtatcgcatcgcgattgaatccacgagtgacaaagcgcgttttccggtttctcaacgaagatgatattgagccatcaacaagtcaaacatatggttctctagtgaagaatctcacatttgttaaaacctttgccgctgggattcttgttcccaaacactatatctggccaacggacagcagcttgtacttgcagccacatacatcggttgtttcggacgctcataaggaaggacttgagatttatgcagccgactttgttaatgatgtaccatttgcttataattatagctatgatcctgtagctgagtatttatcctttatagacaacggtgagttctcggtggacggagtgttatctgacttcccaatgtctccatctgcgtcagtagattgcttctcgcatttgggtgcgaatgataagcctcaagtaactcttcagattatcgcacctcaaggagcaagtggtgactatcctggttgtacagatttagcatatacaaaagctgcttccgatggtgcagatattattggctgtcctgtccaaatgacaaaagatggaatacccttctgccttagttcgataaatctgatagacacgacgactgcggcccaatcgccattcagcgacatcgctaccactgctccagagcttcagataacagatggaatactcaccatcaacctaaactggagcgatattcaaacgctgaaaccggtaatatcaacccggtattcagactttagattgtcacggaatccaaaggccagaaatgttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="22639" stop="25271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22744" g_stop="22759" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22760" i_stop="22946" i_length="187">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22947" g_stop="23448" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="518" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23449" i_stop="23564" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23565" g_stop="23603" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="557" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23604" i_stop="24114" i_length="511">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24115" g_stop="24399" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="842" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24400" i_stop="24906" i_length="507">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24907" g_stop="24971" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="843" r_stop="907" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E739478" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>907</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22744" e_stop="22759"/>
          <exon e_start="22947" e_stop="23448"/>
          <exon e_start="23565" e_stop="23603"/>
          <exon e_start="24115" e_stop="24399"/>
          <exon e_start="24907" e_stop="24971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTGAATATCCAGGTATGCATTTGGTTACAGTATGCTTTTGGTACTTACTTGTTGCCTACTTTCAGTTTTTCAATCTCTAAGAATCTAAGAGGAACAGTTTAATTATCATACCATGCGTTGCTGCATTTGATGTGTGGTATGTTAAGTTTGTGTAGGCCTAACAATTATTTAACTCATTCTTCTGTAAATACATTTCCAGCATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCTAGAAGTGTTATTGCCAACTATATTTCATCACCTGAGGTGAATTTCCTGCGAAGTATCGCATCGCGATTGAATCCACGAGTGACAAAGCGCGTTTTCCGGTTTCTCAACGAAGATGATATTGAGCCATCAACAAGTCAAACATATGGTTCTCTAGTGAAGAATCTCACATTTGTTAAAACCTTTGCCGCTGGGATTCTTGTTCCCAAACACTATATCTGGCCAACGGACAGCAGCTTGTACTTGCAGCCACATACATCGGTTGTTTCGGACGCTCATAAGGAAGGACTTGAGATTTATGCAGCCGACTTTGTTAATGATGTACCATTTGCTTATAATTATAGCTATGATCCTGTAGCTGAGTATTTATCCTTTATAGACAACGGTGAGTTCTCGGTGGACGGAGTGTTATCTGACTTCCCAATGTCTCCATCTGCGTCAGTAGGTAAGTGACAGTCTATTTTGATTCTGTATTGAGAGTGTGCTAGTATAAGCTTTGTTTACTGCTCTCATAGTTTCTCTTAATCTTTCTATGGTACTTATCCATTTCTAATCTCGCAGATTGCTTCTCGCATTTGGGTGCGAATGATAAGCCTCAAGGTATGCTGTTGATATACACACTTTTCCAGAATAATTTATGTTGTTTAATATGTTTAGACATTTTCATTGAAATCTTGACAATGCAAGTTATCTTGCAAAGCTTTCAAATTCTCACACTTGTTTAAAATGAATTGAACATGGAGTCAACTAATTTTCATAAAATTGAAACCTTGAATTTGATTTACGTAACTTTCTAAGTAAATGAGCTTTACCCTGTCCCTTGTTCACATGCGACATTCCATGTTAAACTATGTGTTATTTATACGGACATAAATTATGTATTGTTTTACTGCAGTACAATGCGGAAATATATTACAATTAGCAATACCTAGATGTCAGTAACTAATGATGATATACCTTATAGTAGGCGTCCCCTGCACAAAAATCTCTGTTATCGTTCAGCATATAACAGTTCACTCTAAGATATCCATGCATAACTAGTTCACCAAATGATGGCATACTGATTATCGATGTTCACTCTCTTGTTCTCTCTTCCTCCTTTGGCCTGCAGTAACTCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACACGACGACTGCGGCCCAATCGCCATTCAGCGACATCGCTACCACTGCTCCAGAGCTTCAGATAACAGATGGAATACTCACCATCAACCTAAACTGGAGCGATATTCAAACGCTGAAACGTAAGTTGAATTATCTGTATTGTGTTTTTTTATCTTCTTCATATCTGGGACTTCTGTACTGTGATGCATTTATCTTTGCACATATAACAAATTCAGGGATTAATTTAAGTTTTTAGCTATTTATCTTTTAGCTTGTTAATTTTTTTGAAATGCAGATATAAGCTCTTAAAGAGGAGCAATGTTCTAGGAATTCATCATCCCAGTTCTCCTTCCTCATTAAGAATGTTTTTGAAATGTGTGAAATAATTTCGAAAACTGGAATTTTATTTGGCTTAATAATAGCCTCTTTTTTCCACTTTGACATGCTTTTGTGGCATACACTTTCCGCAAGCTCTTTTAAGACATGTTCTCGAATTTTCTAGAGACCTTCATTTCTTGTATGGACATTTCTGCAATGCTTACTTTTCTTCTAATTATTTGTCATTGCAAGATTATGCACTACTTCAATTGAAATTTCGGAATACTATTGTTTCAAAATGCATTTAAACATGCTCTAATGTCTTGCAGCGGTAATATCAACCCGGTATTCAGACTTTAGATTGTCACGGAATCCAAAGGCCAGAAATGTTGGA</genome_strand>
        <mrna_strand>ATGGTTGAATATCCAG...........................................................................................................................................................................................CATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCTAGAAGTGTTATTGCCAACTATATTTCATCACCTGAGGTGAATTTCCTGCGAAGTATCGCATCGCGATTGAATCCACGAGTGACAAAGCGCGTTTTCCGGTTTCTCAACGAAGATGATATTGAGCCATCAACAAGTCAAACATATGGTTCTCTAGTGAAGAATCTCACATTTGTTAAAACCTTTGCCGCTGGGATTCTTGTTCCCAAACACTATATCTGGCCAACGGACAGCAGCTTGTACTTGCAGCCACATACATCGGTTGTTTCGGACGCTCATAAGGAAGGACTTGAGATTTATGCAGCCGACTTTGTTAATGATGTACCATTTGCTTATAATTATAGCTATGATCCTGTAGCTGAGTATTTATCCTTTATAGACAACGGTGAGTTCTCGGTGGACGGAGTGTTATCTGACTTCCCAATGTCTCCATCTGCGTCAGTAG....................................................................................................................ATTGCTTCTCGCATTTGGGTGCGAATGATAAGCCTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACACGACGACTGCGGCCCAATCGCCATTCAGCGACATCGCTACCACTGCTCCAGAGCTTCAGATAACAGATGGAATACTCACCATCAACCTAAACTGGAGCGATATTCAAACGCTGAAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTAATATCAACCCGGTATTCAGACTTTAGATTGTCACGGAATCCAAAGGCCAGAAATGTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E736776" ref_strand="+" ref_description="SGN-E736776 [LC07AF03]">
      <seq>atggttgaatatccagcatgattccttctacagccagcacaatctgagtatgagaagctttgttgtttccctatctagaagtgttattgccaactatatttcatcacctgaggtgaatttcctgcgaagtatcgcatcgcgattgaatccacgagtgacaaagcgcgttttccggtttctcaacgaagatgatattgagccatcaacaagtcaaacatatggttctctagtgaagaatctcacatttgttaaaacctttgccgctgggattcttgttcccaaacactatatctggccaacggacagcagcttgtacttgcagccacatacatcggttgtttcggacgctcataaggaaggacttgagatttatgcagccgactttgttaatgatgtaccatttgcttataattatagctatgatcctgtagctgagtatttatcctttatagacaacggtgagttctcggtggacggagtgttatctgacttcccaatgtctccatctgcgtcagtagattgcttctcgcatttgggtgcgaatgataagcctcaagtaactcttcagattatcgcacctcaaggagcaagtggtgactatcctggttgtacagatttagcatatacaaaagctgcttccgatggtgcagatattattggctgtcctgtccaaatgacaaaagatggaatacccttctgccttagttcgataaatctgatagacacgacgactgcggcccaatcgccattcagcgacatcgctaccactgctccagagcttcagataacagatggaatactcaccatcaacctaaactggagcgatattcaaacgctgaaaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="22639" stop="24699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22744" g_stop="22759" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22760" i_stop="22946" i_length="187">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22947" g_stop="23448" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="518" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23449" i_stop="23564" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23565" g_stop="23603" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="557" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23604" i_stop="24114" i_length="511">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24115" g_stop="24399" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="842" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E736776" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22744" e_stop="22759"/>
          <exon e_start="22947" e_stop="23448"/>
          <exon e_start="23565" e_stop="23603"/>
          <exon e_start="24115" e_stop="24399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTGAATATCCAGGTATGCATTTGGTTACAGTATGCTTTTGGTACTTACTTGTTGCCTACTTTCAGTTTTTCAATCTCTAAGAATCTAAGAGGAACAGTTTAATTATCATACCATGCGTTGCTGCATTTGATGTGTGGTATGTTAAGTTTGTGTAGGCCTAACAATTATTTAACTCATTCTTCTGTAAATACATTTCCAGCATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCTAGAAGTGTTATTGCCAACTATATTTCATCACCTGAGGTGAATTTCCTGCGAAGTATCGCATCGCGATTGAATCCACGAGTGACAAAGCGCGTTTTCCGGTTTCTCAACGAAGATGATATTGAGCCATCAACAAGTCAAACATATGGTTCTCTAGTGAAGAATCTCACATTTGTTAAAACCTTTGCCGCTGGGATTCTTGTTCCCAAACACTATATCTGGCCAACGGACAGCAGCTTGTACTTGCAGCCACATACATCGGTTGTTTCGGACGCTCATAAGGAAGGACTTGAGATTTATGCAGCCGACTTTGTTAATGATGTACCATTTGCTTATAATTATAGCTATGATCCTGTAGCTGAGTATTTATCCTTTATAGACAACGGTGAGTTCTCGGTGGACGGAGTGTTATCTGACTTCCCAATGTCTCCATCTGCGTCAGTAGGTAAGTGACAGTCTATTTTGATTCTGTATTGAGAGTGTGCTAGTATAAGCTTTGTTTACTGCTCTCATAGTTTCTCTTAATCTTTCTATGGTACTTATCCATTTCTAATCTCGCAGATTGCTTCTCGCATTTGGGTGCGAATGATAAGCCTCAAGGTATGCTGTTGATATACACACTTTTCCAGAATAATTTATGTTGTTTAATATGTTTAGACATTTTCATTGAAATCTTGACAATGCAAGTTATCTTGCAAAGCTTTCAAATTCTCACACTTGTTTAAAATGAATTGAACATGGAGTCAACTAATTTTCATAAAATTGAAACCTTGAATTTGATTTACGTAACTTTCTAAGTAAATGAGCTTTACCCTGTCCCTTGTTCACATGCGACATTCCATGTTAAACTATGTGTTATTTATACGGACATAAATTATGTATTGTTTTACTGCAGTACAATGCGGAAATATATTACAATTAGCAATACCTAGATGTCAGTAACTAATGATGATATACCTTATAGTAGGCGTCCCCTGCACAAAAATCTCTGTTATCGTTCAGCATATAACAGTTCACTCTAAGATATCCATGCATAACTAGTTCACCAAATGATGGCATACTGATTATCGATGTTCACTCTCTTGTTCTCTCTTCCTCCTTTGGCCTGCAGTAACTCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACACGACGACTGCGGCCCAATCGCCATTCAGCGACATCGCTACCACTGCTCCAGAGCTTCAGATAACAGATGGAATACTCACCATCAACCTAAACTGGAGCGATATTCAAACGCTGAAAC</genome_strand>
        <mrna_strand>ATGGTTGAATATCCAG...........................................................................................................................................................................................CATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCTAGAAGTGTTATTGCCAACTATATTTCATCACCTGAGGTGAATTTCCTGCGAAGTATCGCATCGCGATTGAATCCACGAGTGACAAAGCGCGTTTTCCGGTTTCTCAACGAAGATGATATTGAGCCATCAACAAGTCAAACATATGGTTCTCTAGTGAAGAATCTCACATTTGTTAAAACCTTTGCCGCTGGGATTCTTGTTCCCAAACACTATATCTGGCCAACGGACAGCAGCTTGTACTTGCAGCCACATACATCGGTTGTTTCGGACGCTCATAAGGAAGGACTTGAGATTTATGCAGCCGACTTTGTTAATGATGTACCATTTGCTTATAATTATAGCTATGATCCTGTAGCTGAGTATTTATCCTTTATAGACAACGGTGAGTTCTCGGTGGACGGAGTGTTATCTGACTTCCCAATGTCTCCATCTGCGTCAGTAG....................................................................................................................ATTGCTTCTCGCATTTGGGTGCGAATGATAAGCCTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACACGACGACTGCGGCCCAATCGCCATTCAGCGACATCGCTACCACTGCTCCAGAGCTTCAGATAACAGATGGAATACTCACCATCAACCTAAACTGGAGCGATATTCAAACGCTGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E429358" ref_strand="+" ref_description="SGN-E429358 [STM-51-N16]">
      <seq>ggtggacggagtgttatctgacttcccaatgtctccatctgcgtcagtagattgcttctcgcatttgggtgagaatgataagcctcaagtaaagcttcagattatcgcacctcaaggagcaagtggtgactatcctggttgtacagatttagcatatgcaaaagctgcttccgatggtgcagatattcttggctgtcctgtccaaatgacaaaagatggaatacccttctgccttggttcaataaatctgatagacacgacgacggtggcccaatcgccattcagcgacatcgctaccactgttccagagcttcagataacaaatggaatactcaccatcaaccttagctggagcgatattcaaacgctgaaaccggcaatatcaacccggtattcatactttagattgttacggaatccaaaggccagaaatgatggaaactttatgtcgttagcagatttcttgacattttccaaaaatgctaatgtttctggtgtaatgatcagcatagagaatgccccatacctggcaaagcagggattangtgtaactgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="23099" stop="26055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23399" g_stop="23448" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23449" i_stop="23564" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23565" g_stop="23603" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="89" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23604" i_stop="24114" i_length="511">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24115" g_stop="24399" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="374" r_length="285" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24400" i_stop="24906" i_length="507">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24907" g_stop="25046" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="514" r_length="140" r_score="0.943"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25047" i_stop="25711" i_length="665">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25712" g_stop="25756" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="559" r_length="45" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E429358" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E429358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23399" e_stop="23448"/>
          <exon e_start="23565" e_stop="23603"/>
          <exon e_start="24115" e_stop="24399"/>
          <exon e_start="24907" e_stop="25046"/>
          <exon e_start="25712" e_stop="25756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGACGGAGTGTTATCTGACTTCCCAATGTCTCCATCTGCGTCAGTAGGTAAGTGACAGTCTATTTTGATTCTGTATTGAGAGTGTGCTAGTATAAGCTTTGTTTACTGCTCTCATAGTTTCTCTTAATCTTTCTATGGTACTTATCCATTTCTAATCTCGCAGATTGCTTCTCGCATTTGGGTGCGAATGATAAGCCTCAAGGTATGCTGTTGATATACACACTTTTCCAGAATAATTTATGTTGTTTAATATGTTTAGACATTTTCATTGAAATCTTGACAATGCAAGTTATCTTGCAAAGCTTTCAAATTCTCACACTTGTTTAAAATGAATTGAACATGGAGTCAACTAATTTTCATAAAATTGAAACCTTGAATTTGATTTACGTAACTTTCTAAGTAAATGAGCTTTACCCTGTCCCTTGTTCACATGCGACATTCCATGTTAAACTATGTGTTATTTATACGGACATAAATTATGTATTGTTTTACTGCAGTACAATGCGGAAATATATTACAATTAGCAATACCTAGATGTCAGTAACTAATGATGATATACCTTATAGTAGGCGTCCCCTGCACAAAAATCTCTGTTATCGTTCAGCATATAACAGTTCACTCTAAGATATCCATGCATAACTAGTTCACCAAATGATGGCATACTGATTATCGATGTTCACTCTCTTGTTCTCTCTTCCTCCTTTGGCCTGCAGTAACTCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACACGACGACTGCGGCCCAATCGCCATTCAGCGACATCGCTACCACTGCTCCAGAGCTTCAGATAACAGATGGAATACTCACCATCAACCTAAACTGGAGCGATATTCAAACGCTGAAACGTAAGTTGAATTATCTGTATTGTGTTTTTTTATCTTCTTCATATCTGGGACTTCTGTACTGTGATGCATTTATCTTTGCACATATAACAAATTCAGGGATTAATTTAAGTTTTTAGCTATTTATCTTTTAGCTTGTTAATTTTTTTGAAATGCAGATATAAGCTCTTAAAGAGGAGCAATGTTCTAGGAATTCATCATCCCAGTTCTCCTTCCTCATTAAGAATGTTTTTGAAATGTGTGAAATAATTTCGAAAACTGGAATTTTATTTGGCTTAATAATAGCCTCTTTTTTCCACTTTGACATGCTTTTGTGGCATACACTTTCCGCAAGCTCTTTTAAGACATGTTCTCGAATTTTCTAGAGACCTTCATTTCTTGTATGGACATTTCTGCAATGCTTACTTTTCTTCTAATTATTTGTCATTGCAAGATTATGCACTACTTCAATTGAAATTTCGGAATACTATTGTTTCAAAATGCATTTAAACATGCTCTAATGTCTTGCAGCGGTAATATCAACCCGGTATTCAGACTTTAGATTGTCACGGAATCCAAAGGCCAGAAATGTTGGAAAGTTTATGTCGTTAGCAGACTTCTTGACATTTTCCAAAACTGCTAATGTTTCTGGTATAATGATCAGCATAGAGGTGAGTTTCTTCAGGGACTACTGACCTTATTTATACCTATATTCTTATGCATCAATATAGTGTAAGCTCATTTCCGAATCCTAAATGCTTATAAGTTATATACTCACTCCTTATCACTCCTCATTCTAAGTGCAAATTTCATAGCTTCTTATGCTATTTCATAGGTGATTGAATGTGGGAAGCATGCCAAACTTTCCCTTGAAAGAATTTGGAACCAGAAAATGCTTTTGGAAAATGGTCTGTATATTTTCAAAAGGAAAGGATTCACTTTATGACTAGTATTTTAAAGGTTTAATCGTCTGCAAGTATATAAAGGATCTCAATATCTCCAATTTTCTGAAATATTCTCTACAAGTTACAACTAAGCAATTTTAACTGCTTTCCAAGTACAATAATGACTTCCTTTTTAGTAGTAGAATCATAATAATTCTATTTCCATTACTGAAATGAAGAATTACCCACTCAATGTTGAAAGGAATAAAGGATTATAAGCAAAACAATAAGAACTTTGACATCACAAAAAAAGAGAGGAAAGAACAGTCAAAGTAGCGACATTTTTTTTAAATGCTTACACGGGAAAAATCCTGATTTTAATGGATATCTTTGCACACTGGAGGTTTTACCTCCTTCCTCAATATTTGACACAATATTCTGGCTTCATGCAGAATGCTGCATACCTGGCAAAGCAGGGATTAGGTGTAACTGATGCG</genome_strand>
        <mrna_strand>GGTGGACGGAGTGTTATCTGACTTCCCAATGTCTCCATCTGCGTCAGTAG....................................................................................................................ATTGCTTCTCGCATTTGGGTGAGAATGATAAGCCTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATGCAAAAGCTGCTTCCGATGGTGCAGATATTCTTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTGGTTCAATAAATCTGATAGACACGACGACGGTGGCCCAATCGCCATTCAGCGACATCGCTACCACTGTTCCAGAGCTTCAGATAACAAATGGAATACTCACCATCAACCTTAGCTGGAGCGATATTCAAACGCTGAAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCAATATCAACCCGGTATTCATACTTTAGATTGTTACGGAATCCAAAGGCCAGAAATGATGGAAACTTTATGTCGTTAGCAGATTTCTTGACATTTTCCAAAAATGCTAATGTTTCTGGTGTAATGATCAGCATAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCCCCATACCTGGCAAAGCAGGGATTANGTGTAACTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E457151" ref_strand="+" ref_description="SGN-E457151 [cPRO-1-H13]">
      <seq>ggtggacggagtgttatctgacttcccaatgtctccatctgcgtcagtagattgcttctcgcatttgggtgagaatgataagcctcaagtaaagcttcagattatcgcacctcaaggagcaagtggtgactatcctggttgtacagatttagcatatgcaaaagctgcttccgatggtgcagatattcttggctggcctggcccaatgaccaaagaaggaataaccttctgccttgggtccattaatctgataaaaaccaacaacgggggccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="23099" stop="24598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23399" g_stop="23448" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23449" i_stop="23564" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23565" g_stop="23603" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="89" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23604" i_stop="24114" i_length="511">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24115" g_stop="24298" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="274" r_length="185" r_score="0.880"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E457151" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23399" e_stop="23448"/>
          <exon e_start="23565" e_stop="23603"/>
          <exon e_start="24115" e_stop="24298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGACGGAGTGTTATCTGACTTCCCAATGTCTCCATCTGCGTCAGTAGGTAAGTGACAGTCTATTTTGATTCTGTATTGAGAGTGTGCTAGTATAAGCTTTGTTTACTGCTCTCATAGTTTCTCTTAATCTTTCTATGGTACTTATCCATTTCTAATCTCGCAGATTGCTTCTCGCATTTGGGTGCGAATGATAAGCCTCAAGGTATGCTGTTGATATACACACTTTTCCAGAATAATTTATGTTGTTTAATATGTTTAGACATTTTCATTGAAATCTTGACAATGCAAGTTATCTTGCAAAGCTTTCAAATTCTCACACTTGTTTAAAATGAATTGAACATGGAGTCAACTAATTTTCATAAAATTGAAACCTTGAATTTGATTTACGTAACTTTCTAAGTAAATGAGCTTTACCCTGTCCCTTGTTCACATGCGACATTCCATGTTAAACTATGTGTTATTTATACGGACATAAATTATGTATTGTTTTACTGCAGTACAATGCGGAAATATATTACAATTAGCAATACCTAGATGTCAGTAACTAATGATGATATACCTTATAGTAGGCGTCCCCTGCACAAAAATCTCTGTTATCGTTCAGCATATAACAGTTCACTCTAAGATATCCATGCATAACTAGTTCACCAAATGATGGCATACTGATTATCGATGTTCACTCTCTTGTTCTCTCTTCCTCCTTTGGCCTGCAGTAACTCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACA-CGACGACTGCGGCCCA</genome_strand>
        <mrna_strand>GGTGGACGGAGTGTTATCTGACTTCCCAATGTCTCCATCTGCGTCAGTAG....................................................................................................................ATTGCTTCTCGCATTTGGGTGAGAATGATAAGCCTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATGCAAAAGCTGCTTCCGATGGTGCAGATATTCTTGGCTGGCCTGGCCCAATGACCAAAGAAGGAATAACCTTCTGCCTTGGGTCCATTAATCTGATAAAAACCAACAACGGGGGCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E547956" ref_strand="+" ref_description="SGN-E547956 [TUS-56-K3]">
      <seq>acggagtgttatctgacttcccaatgtctccatctgcgtcagtagattgcttctcgcatttgggtgcgaatgataagcctcaagtaactcttcagattatcgcacctcaaggagcaagtggtgactatcctggttgtacagatttagcatatacaaaagctgcttccgatggtgcagatattattggctgtcctgtccaaatgacaaaagatggaatacccttctgccttagttcgataaatctgatagacacgacgactgcggcccaatcgccattcagcgacatcgctaccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="23104" stop="24626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23404" g_stop="23448" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23449" i_stop="23564" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23565" g_stop="23603" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="84" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23604" i_stop="24114" i_length="511">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24115" g_stop="24326" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="296" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E547956" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23404" e_stop="23448"/>
          <exon e_start="23565" e_stop="23603"/>
          <exon e_start="24115" e_stop="24326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGAGTGTTATCTGACTTCCCAATGTCTCCATCTGCGTCAGTAGGTAAGTGACAGTCTATTTTGATTCTGTATTGAGAGTGTGCTAGTATAAGCTTTGTTTACTGCTCTCATAGTTTCTCTTAATCTTTCTATGGTACTTATCCATTTCTAATCTCGCAGATTGCTTCTCGCATTTGGGTGCGAATGATAAGCCTCAAGGTATGCTGTTGATATACACACTTTTCCAGAATAATTTATGTTGTTTAATATGTTTAGACATTTTCATTGAAATCTTGACAATGCAAGTTATCTTGCAAAGCTTTCAAATTCTCACACTTGTTTAAAATGAATTGAACATGGAGTCAACTAATTTTCATAAAATTGAAACCTTGAATTTGATTTACGTAACTTTCTAAGTAAATGAGCTTTACCCTGTCCCTTGTTCACATGCGACATTCCATGTTAAACTATGTGTTATTTATACGGACATAAATTATGTATTGTTTTACTGCAGTACAATGCGGAAATATATTACAATTAGCAATACCTAGATGTCAGTAACTAATGATGATATACCTTATAGTAGGCGTCCCCTGCACAAAAATCTCTGTTATCGTTCAGCATATAACAGTTCACTCTAAGATATCCATGCATAACTAGTTCACCAAATGATGGCATACTGATTATCGATGTTCACTCTCTTGTTCTCTCTTCCTCCTTTGGCCTGCAGTAACTCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACACGACGACTGCGGCCCAATCGCCATTCAGCGACATCGCTACCACT</genome_strand>
        <mrna_strand>ACGGAGTGTTATCTGACTTCCCAATGTCTCCATCTGCGTCAGTAG....................................................................................................................ATTGCTTCTCGCATTTGGGTGCGAATGATAAGCCTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACACGACGACTGCGGCCCAATCGCCATTCAGCGACATCGCTACCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E267464" ref_strand="+" ref_description="SGN-E267464 [cLEI-8-J15]">
      <seq>cggagtgttatctgacttcccaatgtctccatctgcgtcagtagattgcttctcgcatttgggtgcgaatgataagcctcaagtaactcttcagattatcgcacctcaaggagcaagtggtgactatcctggttgtacagatttagcatatacaaaagctgcttccgatggtgcagatattattggctgtcctgtccaaatgacaaaagatggaatacccttctgccttagttcgataaatctgatagacacgacgactgcggcccaatcgccattcagcgacatcgctaccactgctccagagcttcagataacagatggaatactcaccatcaacctaaactggagcgatattcaaacgctgaaaccggtaatatcaacccggtattcagactttaaattgtcacggaatccaaaggccagaaatgttggaaagtttatgtcgttagcagacttcttgacattttccaaaactgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="23105" stop="25317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23405" g_stop="23448" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23449" i_stop="23564" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23565" g_stop="23603" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="83" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23604" i_stop="24114" i_length="511">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24115" g_stop="24399" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="368" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24400" i_stop="24906" i_length="507">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24907" g_stop="25017" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="479" r_length="111" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E267464" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23405" e_stop="23448"/>
          <exon e_start="23565" e_stop="23603"/>
          <exon e_start="24115" e_stop="24399"/>
          <exon e_start="24907" e_stop="25017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGTGTTATCTGACTTCCCAATGTCTCCATCTGCGTCAGTAGGTAAGTGACAGTCTATTTTGATTCTGTATTGAGAGTGTGCTAGTATAAGCTTTGTTTACTGCTCTCATAGTTTCTCTTAATCTTTCTATGGTACTTATCCATTTCTAATCTCGCAGATTGCTTCTCGCATTTGGGTGCGAATGATAAGCCTCAAGGTATGCTGTTGATATACACACTTTTCCAGAATAATTTATGTTGTTTAATATGTTTAGACATTTTCATTGAAATCTTGACAATGCAAGTTATCTTGCAAAGCTTTCAAATTCTCACACTTGTTTAAAATGAATTGAACATGGAGTCAACTAATTTTCATAAAATTGAAACCTTGAATTTGATTTACGTAACTTTCTAAGTAAATGAGCTTTACCCTGTCCCTTGTTCACATGCGACATTCCATGTTAAACTATGTGTTATTTATACGGACATAAATTATGTATTGTTTTACTGCAGTACAATGCGGAAATATATTACAATTAGCAATACCTAGATGTCAGTAACTAATGATGATATACCTTATAGTAGGCGTCCCCTGCACAAAAATCTCTGTTATCGTTCAGCATATAACAGTTCACTCTAAGATATCCATGCATAACTAGTTCACCAAATGATGGCATACTGATTATCGATGTTCACTCTCTTGTTCTCTCTTCCTCCTTTGGCCTGCAGTAACTCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACACGACGACTGCGGCCCAATCGCCATTCAGCGACATCGCTACCACTGCTCCAGAGCTTCAGATAACAGATGGAATACTCACCATCAACCTAAACTGGAGCGATATTCAAACGCTGAAACGTAAGTTGAATTATCTGTATTGTGTTTTTTTATCTTCTTCATATCTGGGACTTCTGTACTGTGATGCATTTATCTTTGCACATATAACAAATTCAGGGATTAATTTAAGTTTTTAGCTATTTATCTTTTAGCTTGTTAATTTTTTTGAAATGCAGATATAAGCTCTTAAAGAGGAGCAATGTTCTAGGAATTCATCATCCCAGTTCTCCTTCCTCATTAAGAATGTTTTTGAAATGTGTGAAATAATTTCGAAAACTGGAATTTTATTTGGCTTAATAATAGCCTCTTTTTTCCACTTTGACATGCTTTTGTGGCATACACTTTCCGCAAGCTCTTTTAAGACATGTTCTCGAATTTTCTAGAGACCTTCATTTCTTGTATGGACATTTCTGCAATGCTTACTTTTCTTCTAATTATTTGTCATTGCAAGATTATGCACTACTTCAATTGAAATTTCGGAATACTATTGTTTCAAAATGCATTTAAACATGCTCTAATGTCTTGCAGCGGTAATATCAACCCGGTATTCAGACTTTAGATTGTCACGGAATCCAAAGGCCAGAAATGTTGGAAAGTTTATGTCGTTAGCAGACTTCTTGACATTTTCCAAAACTGCTA</genome_strand>
        <mrna_strand>CGGAGTGTTATCTGACTTCCCAATGTCTCCATCTGCGTCAGTAG....................................................................................................................ATTGCTTCTCGCATTTGGGTGCGAATGATAAGCCTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACACGACGACTGCGGCCCAATCGCCATTCAGCGACATCGCTACCACTGCTCCAGAGCTTCAGATAACAGATGGAATACTCACCATCAACCTAAACTGGAGCGATATTCAAACGCTGAAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTAATATCAACCCGGTATTCAGACTTTAAATTGTCACGGAATCCAAAGGCCAGAAATGTTGGAAAGTTTATGTCGTTAGCAGACTTCTTGACATTTTCCAAAACTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E267465" ref_strand="+" ref_description="SGN-E267465 [cLEI-8-J17]">
      <seq>cggagtgttatctgacttcccaatgtctccatctgcgtcagtagattgcttctcgcatttgggtgcgaatgataagcctcaagtaactcttcagattatcgcacctcaaggagcaagtggtgactatcctggttgtacagatttagcatatacaaaagctgcttccgatggtgcagatattattggctgtcctgtccaaatgacaaaagatggaatacccttctgccttagttcgataaatctgatagacacgacgactgcggcccaatcgccattcagcgacatcgctaccactgctccagagcttcagataacagatggaatactcaccatcaacctaaactggagcgatattcaaacgctgaaaccggtaatatcaacccggtattcagactttagattgtcacggaatccaaaggccataaatgttggaaagtttatgtcgttagcagacttcttgacattttccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="23105" stop="25310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23405" g_stop="23448" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23449" i_stop="23564" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23565" g_stop="23603" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="83" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23604" i_stop="24114" i_length="511">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24115" g_stop="24399" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="368" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24400" i_stop="24906" i_length="507">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24907" g_stop="25010" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="472" r_length="104" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E267465" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23405" e_stop="23448"/>
          <exon e_start="23565" e_stop="23603"/>
          <exon e_start="24115" e_stop="24399"/>
          <exon e_start="24907" e_stop="25010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGTGTTATCTGACTTCCCAATGTCTCCATCTGCGTCAGTAGGTAAGTGACAGTCTATTTTGATTCTGTATTGAGAGTGTGCTAGTATAAGCTTTGTTTACTGCTCTCATAGTTTCTCTTAATCTTTCTATGGTACTTATCCATTTCTAATCTCGCAGATTGCTTCTCGCATTTGGGTGCGAATGATAAGCCTCAAGGTATGCTGTTGATATACACACTTTTCCAGAATAATTTATGTTGTTTAATATGTTTAGACATTTTCATTGAAATCTTGACAATGCAAGTTATCTTGCAAAGCTTTCAAATTCTCACACTTGTTTAAAATGAATTGAACATGGAGTCAACTAATTTTCATAAAATTGAAACCTTGAATTTGATTTACGTAACTTTCTAAGTAAATGAGCTTTACCCTGTCCCTTGTTCACATGCGACATTCCATGTTAAACTATGTGTTATTTATACGGACATAAATTATGTATTGTTTTACTGCAGTACAATGCGGAAATATATTACAATTAGCAATACCTAGATGTCAGTAACTAATGATGATATACCTTATAGTAGGCGTCCCCTGCACAAAAATCTCTGTTATCGTTCAGCATATAACAGTTCACTCTAAGATATCCATGCATAACTAGTTCACCAAATGATGGCATACTGATTATCGATGTTCACTCTCTTGTTCTCTCTTCCTCCTTTGGCCTGCAGTAACTCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACACGACGACTGCGGCCCAATCGCCATTCAGCGACATCGCTACCACTGCTCCAGAGCTTCAGATAACAGATGGAATACTCACCATCAACCTAAACTGGAGCGATATTCAAACGCTGAAACGTAAGTTGAATTATCTGTATTGTGTTTTTTTATCTTCTTCATATCTGGGACTTCTGTACTGTGATGCATTTATCTTTGCACATATAACAAATTCAGGGATTAATTTAAGTTTTTAGCTATTTATCTTTTAGCTTGTTAATTTTTTTGAAATGCAGATATAAGCTCTTAAAGAGGAGCAATGTTCTAGGAATTCATCATCCCAGTTCTCCTTCCTCATTAAGAATGTTTTTGAAATGTGTGAAATAATTTCGAAAACTGGAATTTTATTTGGCTTAATAATAGCCTCTTTTTTCCACTTTGACATGCTTTTGTGGCATACACTTTCCGCAAGCTCTTTTAAGACATGTTCTCGAATTTTCTAGAGACCTTCATTTCTTGTATGGACATTTCTGCAATGCTTACTTTTCTTCTAATTATTTGTCATTGCAAGATTATGCACTACTTCAATTGAAATTTCGGAATACTATTGTTTCAAAATGCATTTAAACATGCTCTAATGTCTTGCAGCGGTAATATCAACCCGGTATTCAGACTTTAGATTGTCACGGAATCCAAAGGCCAGAAATGTTGGAAAGTTTATGTCGTTAGCAGACTTCTTGACATTTTCCAAA</genome_strand>
        <mrna_strand>CGGAGTGTTATCTGACTTCCCAATGTCTCCATCTGCGTCAGTAG....................................................................................................................ATTGCTTCTCGCATTTGGGTGCGAATGATAAGCCTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACACGACGACTGCGGCCCAATCGCCATTCAGCGACATCGCTACCACTGCTCCAGAGCTTCAGATAACAGATGGAATACTCACCATCAACCTAAACTGGAGCGATATTCAAACGCTGAAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTAATATCAACCCGGTATTCAGACTTTAGATTGTCACGGAATCCAAAGGCCATAAATGTTGGAAAGTTTATGTCGTTAGCAGACTTCTTGACATTTTCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E737168" ref_strand="+" ref_description="SGN-E737168 [LC08CH11]">
      <seq>cgcttcaagtaactcttcagattatcgcacctcaaggagcaagtggtgactatcctggttgtacagatttagcatatacaaaagctgcttccgatggtgcagatattattggctgtcctgtccaaatgacaaaagatggaatacccttctgccttagttcgataaatctgatagacacgacgactgcggcccaatcgccattcagcgacatcgctaccactgctccagagcttcagataacagatggaatactcaccatcaacctaaactggagcgatattcaaacgctgaaaccggtaatatcaacccggtattcagactttagattgtcacggaatccaaaggccagaaatgttggaaagtttatgtcgttagcagacttcttgacattttccaaaactgctaatgtttctggtataatgatcagcatagagaatgctgcatacctggcaaagcagggattaggtgtaactgatgcggttttggatgccctaagcacagctggttacaataatcagacagctaggaaagttatgatccaatcaaatgacagttctgttctggaagaattcaagaagagtagttatgaacttgtttatttggttgacgataatatcagtgatattaagaactcaactatattggagatcaagacctttgcaaaatctgttgtcataaccaagaaatcagtcttccccagtgaagacgcttttatcattggtcaaacgaatattgtgcagaagctgcagtcagcaaatctcccggtatatgtacgactatttaataacgagtttatatctcaagcatgggacttcttctcagattcgtctactgagataaacaactatgttcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="23809" stop="26433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24018" g_stop="24026" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24027" i_stop="24114" i_length="88">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24115" g_stop="24399" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="294" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24400" i_stop="24906" i_length="507">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24907" g_stop="25046" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="434" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25047" i_stop="25711" i_length="665">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25712" g_stop="26133" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="856" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E737168" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24018" e_stop="24026"/>
          <exon e_start="24115" e_stop="24399"/>
          <exon e_start="24907" e_stop="25046"/>
          <exon e_start="25712" e_stop="26133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTAAGATATCCATGCATAACTAGTTCACCAAATGATGGCATACTGATTATCGATGTTCACTCTCTTGTTCTCTCTTCCTCCTTTGGCCTGCAGTAACTCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACACGACGACTGCGGCCCAATCGCCATTCAGCGACATCGCTACCACTGCTCCAGAGCTTCAGATAACAGATGGAATACTCACCATCAACCTAAACTGGAGCGATATTCAAACGCTGAAACGTAAGTTGAATTATCTGTATTGTGTTTTTTTATCTTCTTCATATCTGGGACTTCTGTACTGTGATGCATTTATCTTTGCACATATAACAAATTCAGGGATTAATTTAAGTTTTTAGCTATTTATCTTTTAGCTTGTTAATTTTTTTGAAATGCAGATATAAGCTCTTAAAGAGGAGCAATGTTCTAGGAATTCATCATCCCAGTTCTCCTTCCTCATTAAGAATGTTTTTGAAATGTGTGAAATAATTTCGAAAACTGGAATTTTATTTGGCTTAATAATAGCCTCTTTTTTCCACTTTGACATGCTTTTGTGGCATACACTTTCCGCAAGCTCTTTTAAGACATGTTCTCGAATTTTCTAGAGACCTTCATTTCTTGTATGGACATTTCTGCAATGCTTACTTTTCTTCTAATTATTTGTCATTGCAAGATTATGCACTACTTCAATTGAAATTTCGGAATACTATTGTTTCAAAATGCATTTAAACATGCTCTAATGTCTTGCAGCGGTAATATCAACCCGGTATTCAGACTTTAGATTGTCACGGAATCCAAAGGCCAGAAATGTTGGAAAGTTTATGTCGTTAGCAGACTTCTTGACATTTTCCAAAACTGCTAATGTTTCTGGTATAATGATCAGCATAGAGGTGAGTTTCTTCAGGGACTACTGACCTTATTTATACCTATATTCTTATGCATCAATATAGTGTAAGCTCATTTCCGAATCCTAAATGCTTATAAGTTATATACTCACTCCTTATCACTCCTCATTCTAAGTGCAAATTTCATAGCTTCTTATGCTATTTCATAGGTGATTGAATGTGGGAAGCATGCCAAACTTTCCCTTGAAAGAATTTGGAACCAGAAAATGCTTTTGGAAAATGGTCTGTATATTTTCAAAAGGAAAGGATTCACTTTATGACTAGTATTTTAAAGGTTTAATCGTCTGCAAGTATATAAAGGATCTCAATATCTCCAATTTTCTGAAATATTCTCTACAAGTTACAACTAAGCAATTTTAACTGCTTTCCAAGTACAATAATGACTTCCTTTTTAGTAGTAGAATCATAATAATTCTATTTCCATTACTGAAATGAAGAATTACCCACTCAATGTTGAAAGGAATAAAGGATTATAAGCAAAACAATAAGAACTTTGACATCACAAAAAAAGAGAGGAAAGAACAGTCAAAGTAGCGACATTTTTTTTAAATGCTTACACGGGAAAAATCCTGATTTTAATGGATATCTTTGCACACTGGAGGTTTTACCTCCTTCCTCAATATTTGACACAATATTCTGGCTTCATGCAGAATGCTGCATACCTGGCAAAGCAGGGATTAGGTGTAACTGATGCGGTTTTGGATGCCCTAAGCACAGCTGGTTACAATAATCAGACAGCTAGGAAAGTTATGATCCAATCAAATGACAGTTCTGTTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTATATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGG</genome_strand>
        <mrna_strand>CGCTTCAAG........................................................................................TAACTCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACACGACGACTGCGGCCCAATCGCCATTCAGCGACATCGCTACCACTGCTCCAGAGCTTCAGATAACAGATGGAATACTCACCATCAACCTAAACTGGAGCGATATTCAAACGCTGAAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTAATATCAACCCGGTATTCAGACTTTAGATTGTCACGGAATCCAAAGGCCAGAAATGTTGGAAAGTTTATGTCGTTAGCAGACTTCTTGACATTTTCCAAAACTGCTAATGTTTCTGGTATAATGATCAGCATAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTGCATACCTGGCAAAGCAGGGATTAGGTGTAACTGATGCGGTTTTGGATGCCCTAAGCACAGCTGGTTACAATAATCAGACAGCTAGGAAAGTTATGATCCAATCAAATGACAGTTCTGTTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTATATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E479358" ref_strand="+" ref_description="SGN-E479358 [cSTD-9-H19]">
      <seq>tggagattataagccctcaagtaaagcttcagattctcgcacctcaaggagcaagtgggtgaccatcctggttgtacagatttagcatatgccaaaagctgcttccgatggtgcagatattcttggctgtcctgtccaaatgacaaaagatggaatacccttctgccttggttcaataaatctgatagacacgacgacggtggcccaatcgccattcagcgacatcgctaccactgttccagagcttcagataacaaatggaatactcaccatcaaccttagctggagcgatattcaaacgctgaaaccggcaatatcaacccggtattcagactttagattgttacggaatccaaaggccagaaatgatggaaactttatgtcgttagcagatttcttgacattttccaaaaatgttaatgtttctggtgtaatgatcagcatagagaatgccccatacctggcaaagcagggattaggtgtaactgatgctgtttcgaatgccttaagcacggctggttacaataatcagacagctaggaaagttatgatccaatcaatgacangttctgttctggaagaattcaagaagagtagttatgaacttgtttatttgattgacgaggatatcagtgatattaagaactcaactttttnggagatcaagacctttgcanaatctgttgtcataaccaagaaatcagtcttccccagtgaagacgcttttatcattggtcaaacgaatgttgtgctgaagctgcagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="23806" stop="26329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24115" g_stop="24399" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="308" r_length="287" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24400" i_stop="24906" i_length="507">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24907" g_stop="25046" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="448" r_length="140" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25047" i_stop="25711" i_length="665">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25712" g_stop="26029" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="766" r_length="318" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E479358" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24115" e_stop="24399"/>
          <exon e_start="24907" e_stop="25046"/>
          <exon e_start="25712" e_stop="26029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTCTTCAGATTATCGCACCTCAAGGAGCAAGT-GGTGACTATCCTGGTTGTACAGATTTAGCATAT-ACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACACGACGACTGCGGCCCAATCGCCATTCAGCGACATCGCTACCACTGCTCCAGAGCTTCAGATAACAGATGGAATACTCACCATCAACCTAAACTGGAGCGATATTCAAACGCTGAAACGTAAGTTGAATTATCTGTATTGTGTTTTTTTATCTTCTTCATATCTGGGACTTCTGTACTGTGATGCATTTATCTTTGCACATATAACAAATTCAGGGATTAATTTAAGTTTTTAGCTATTTATCTTTTAGCTTGTTAATTTTTTTGAAATGCAGATATAAGCTCTTAAAGAGGAGCAATGTTCTAGGAATTCATCATCCCAGTTCTCCTTCCTCATTAAGAATGTTTTTGAAATGTGTGAAATAATTTCGAAAACTGGAATTTTATTTGGCTTAATAATAGCCTCTTTTTTCCACTTTGACATGCTTTTGTGGCATACACTTTCCGCAAGCTCTTTTAAGACATGTTCTCGAATTTTCTAGAGACCTTCATTTCTTGTATGGACATTTCTGCAATGCTTACTTTTCTTCTAATTATTTGTCATTGCAAGATTATGCACTACTTCAATTGAAATTTCGGAATACTATTGTTTCAAAATGCATTTAAACATGCTCTAATGTCTTGCAGCGGTAATATCAACCCGGTATTCAGACTTTAGATTGTCACGGAATCCAAAGGCCAGAAATGTTGGAAAGTTTATGTCGTTAGCAGACTTCTTGACATTTTCCAAAACTGCTAATGTTTCTGGTATAATGATCAGCATAGAGGTGAGTTTCTTCAGGGACTACTGACCTTATTTATACCTATATTCTTATGCATCAATATAGTGTAAGCTCATTTCCGAATCCTAAATGCTTATAAGTTATATACTCACTCCTTATCACTCCTCATTCTAAGTGCAAATTTCATAGCTTCTTATGCTATTTCATAGGTGATTGAATGTGGGAAGCATGCCAAACTTTCCCTTGAAAGAATTTGGAACCAGAAAATGCTTTTGGAAAATGGTCTGTATATTTTCAAAAGGAAAGGATTCACTTTATGACTAGTATTTTAAAGGTTTAATCGTCTGCAAGTATATAAAGGATCTCAATATCTCCAATTTTCTGAAATATTCTCTACAAGTTACAACTAAGCAATTTTAACTGCTTTCCAAGTACAATAATGACTTCCTTTTTAGTAGTAGAATCATAATAATTCTATTTCCATTACTGAAATGAAGAATTACCCACTCAATGTTGAAAGGAATAAAGGATTATAAGCAAAACAATAAGAACTTTGACATCACAAAAAAAGAGAGGAAAGAACAGTCAAAGTAGCGACATTTTTTTTAAATGCTTACACGGGAAAAATCCTGATTTTAATGGATATCTTTGCACACTGGAGGTTTTACCTCCTTCCTCAATATTTGACACAATATTCTGGCTTCATGCAGAATGCTGCATACCTGGCAAAGCAGGGATTAGGTGTAACTGATGCGGTTTTGGATGCCCTAAGCACAGCTGGTTACAATAATCAGACAGCTAGGAAAGTTATGATCCAATCAAATGACA-GTTCTGTTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTATATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCA</genome_strand>
        <mrna_strand>TAAAGCTTCAGATTCTCGCACCTCAAGGAGCAAGTGGGTGACCATCCTGGTTGTACAGATTTAGCATATGCCAAAAGCTGCTTCCGATGGTGCAGATATTCTTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTGGTTCAATAAATCTGATAGACACGACGACGGTGGCCCAATCGCCATTCAGCGACATCGCTACCACTGTTCCAGAGCTTCAGATAACAAATGGAATACTCACCATCAACCTTAGCTGGAGCGATATTCAAACGCTGAAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCAATATCAACCCGGTATTCAGACTTTAGATTGTTACGGAATCCAAAGGCCAGAAATGATGGAAACTTTATGTCGTTAGCAGATTTCTTGACATTTTCCAAAAATGTTAATGTTTCTGGTGTAATGATCAGCATAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCCCCATACCTGGCAAAGCAGGGATTAGGTGTAACTGATGCTGTTTCGAATGCCTTAAGCACGGCTGGTTACAATAATCAGACAGCTAGGAAAGTTATGATCCAATC-AATGACANGTTCTGTTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGATTGACGAGGATATCAGTGATATTAAGAACTCAACTTTTTNGGAGATCAAGACCTTTGCANAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATGTTGTGCTGAAGCTGCAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E444236" ref_strand="+" ref_description="SGN-E444236 [cSTA-42-M23]">
      <seq>cgaggagaaatgaaggaaactttatgtcgttagcagacttcttgacattttccaaaaaggctaatgtttctggtgtaattatcagcatagagaatgccgtatacctggcaaagcagggatttggtgtaactggtgctgtttcggaccgcccttaagcacagctggttacaataatcagacagctaggaaagttatgatccaatcaaatgacagttctgttctggaagaattcaagaagagtagttatgaacttgtttatttggttgacgataatatcagtgatattaagaactcaactttattggagatcaagacctttgcaaaatctgttgtcataaccaagaaatcagtcttccccagtgaagaagcttttatcattggtcaaacgaatgttgtgcagaagctgcagtcagcaaatctccccgtatatgtgcgactatttaataacgagtttatatctcaagcatgggacttcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="24660" stop="26396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24955" g_stop="25046" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.880"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25047" i_stop="25711" i_length="665">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25712" g_stop="26096" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="479" r_length="387" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E444236" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24955" e_stop="25046"/>
          <exon e_start="25712" e_stop="26096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCCAGAAATGTTGGAAAGTTTATGTCGTTAGCAGACTTCTTGACATTTTCCAAAACTGCTAATGTTTCTGGTATAATGATCAGCATAGAGGTGAGTTTCTTCAGGGACTACTGACCTTATTTATACCTATATTCTTATGCATCAATATAGTGTAAGCTCATTTCCGAATCCTAAATGCTTATAAGTTATATACTCACTCCTTATCACTCCTCATTCTAAGTGCAAATTTCATAGCTTCTTATGCTATTTCATAGGTGATTGAATGTGGGAAGCATGCCAAACTTTCCCTTGAAAGAATTTGGAACCAGAAAATGCTTTTGGAAAATGGTCTGTATATTTTCAAAAGGAAAGGATTCACTTTATGACTAGTATTTTAAAGGTTTAATCGTCTGCAAGTATATAAAGGATCTCAATATCTCCAATTTTCTGAAATATTCTCTACAAGTTACAACTAAGCAATTTTAACTGCTTTCCAAGTACAATAATGACTTCCTTTTTAGTAGTAGAATCATAATAATTCTATTTCCATTACTGAAATGAAGAATTACCCACTCAATGTTGAAAGGAATAAAGGATTATAAGCAAAACAATAAGAACTTTGACATCACAAAAAAAGAGAGGAAAGAACAGTCAAAGTAGCGACATTTTTTTTAAATGCTTACACGGGAAAAATCCTGATTTTAATGGATATCTTTGCACACTGGAGGTTTTACCTCCTTCCTCAATATTTGACACAATATTCTGGCTTCATGCAGAATGCTGCATACCTGGCAAAGCAGGGATTAGGTGTAACTGATGCGGTTTTGGA-TGCCC-TAAGCACAGCTGGTTACAATAATCAGACAGCTAGGAAAGTTATGATCCAATCAAATGACAGTTCTGTTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTATATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCT</genome_strand>
        <mrna_strand>CGAGGAGAAATGAAGGAAACTTTATGTCGTTAGCAGACTTCTTGACATTTTCCAAAAAGGCTAATGTTTCTGGTGTAATTATCAGCATAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCCGTATACCTGGCAAAGCAGGGATTTGGTGTAACTGGTGCTGTTTCGGACCGCCCTTAAGCACAGCTGGTTACAATAATCAGACAGCTAGGAAAGTTATGATCCAATCAAATGACAGTTCTGTTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTTTATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGAAGCTTTTATCATTGGTCAAACGAATGTTGTGCAGAAGCTGCAGTCAGCAAATCTCCCCGTATATGTGCGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E710204" ref_strand="+" ref_description="SGN-E710204 [FA54CE11]">
      <seq>cgctgaaatgttggaaagtttatgtcgttagcagacttcttgacattttccaaaactgctaatgtttctggtataatgatcagcatagagaatgctgcatacctggcaaagcagggattaggtgtaactgatgcggttttggatgccctaagcacagctggttacaataatcagacagctaggaaagttatgatccaatcaaatgacagttctgttctggaagaattcaagaagagtagttatgaacttgtttatttggttgacgataatatcagtgatattaagaactcaactatattggagatcaagacctttgcaaaatctgttgtcataaccaagaaatcagtcttccccagtgaagacgcttttatcattggtcaaacgaatattgtgcagaagctgcagtcagcaaatctcccggtatatgtacgactatttaataacgagtttatatctcaagcatgggacttcttctcagattcgtctactgagataaacaactatgttcttggagctggtgttgatggtcttgttacagaataccctgggacagcggctagataccgaaggaaccgttgtttagcatacaaaaacttgccaccatatatgagccctgttcaacctgggagtctcctgggactcatgactgttcagtctatgccaccagtcgaacctcccagccccgtgctcgatgtaagtgatgtgactgagccaccacttccacctgttgcaaagataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="24659" stop="26916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24957" g_stop="25046" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25047" i_stop="25711" i_length="665">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25712" g_stop="26189" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="568" r_length="478" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26190" i_stop="26444" i_length="255">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26445" g_stop="26616" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="740" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E710204" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24957" e_stop="25046"/>
          <exon e_start="25712" e_stop="26189"/>
          <exon e_start="26445" e_stop="26616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAGAAATGTTGGAAAGTTTATGTCGTTAGCAGACTTCTTGACATTTTCCAAAACTGCTAATGTTTCTGGTATAATGATCAGCATAGAGGTGAGTTTCTTCAGGGACTACTGACCTTATTTATACCTATATTCTTATGCATCAATATAGTGTAAGCTCATTTCCGAATCCTAAATGCTTATAAGTTATATACTCACTCCTTATCACTCCTCATTCTAAGTGCAAATTTCATAGCTTCTTATGCTATTTCATAGGTGATTGAATGTGGGAAGCATGCCAAACTTTCCCTTGAAAGAATTTGGAACCAGAAAATGCTTTTGGAAAATGGTCTGTATATTTTCAAAAGGAAAGGATTCACTTTATGACTAGTATTTTAAAGGTTTAATCGTCTGCAAGTATATAAAGGATCTCAATATCTCCAATTTTCTGAAATATTCTCTACAAGTTACAACTAAGCAATTTTAACTGCTTTCCAAGTACAATAATGACTTCCTTTTTAGTAGTAGAATCATAATAATTCTATTTCCATTACTGAAATGAAGAATTACCCACTCAATGTTGAAAGGAATAAAGGATTATAAGCAAAACAATAAGAACTTTGACATCACAAAAAAAGAGAGGAAAGAACAGTCAAAGTAGCGACATTTTTTTTAAATGCTTACACGGGAAAAATCCTGATTTTAATGGATATCTTTGCACACTGGAGGTTTTACCTCCTTCCTCAATATTTGACACAATATTCTGGCTTCATGCAGAATGCTGCATACCTGGCAAAGCAGGGATTAGGTGTAACTGATGCGGTTTTGGATGCCCTAAGCACAGCTGGTTACAATAATCAGACAGCTAGGAAAGTTATGATCCAATCAAATGACAGTTCTGTTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTATATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAAGTAAGTTATTATATACCTTTGTTGTCTCTCATACCGTGTTCCAATCTTCCCCCTTTCCCCTTTCTTTCTCTTTTAGTTTCTCGATCTATCATCCTCAAACATCAGTATAAATGAATCTCCGGTGTAATCTGCTAGATTTGTGTATATTTTACCAGAGCATTTGCTTGGTCATATCCATTAAGTTGTTCGTGCGAAATGCAACATTAGTACTATATATCCTCAATTTGACACATTCCAATTGTTGGGAATGTACAGGGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAA</genome_strand>
        <mrna_strand>CGCTGAAATGTTGGAAAGTTTATGTCGTTAGCAGACTTCTTGACATTTTCCAAAACTGCTAATGTTTCTGGTATAATGATCAGCATAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTGCATACCTGGCAAAGCAGGGATTAGGTGTAACTGATGCGGTTTTGGATGCCCTAAGCACAGCTGGTTACAATAATCAGACAGCTAGGAAAGTTATGATCCAATCAAATGACAGTTCTGTTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTATATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAA...............................................................................................................................................................................................................................................................GGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E419490" ref_strand="+" ref_description="SGN-E419490 [STM-29-P9]">
      <seq>agaaatgaaggaaactttatgtcgttagcagacttcttgacattttccaaaaaggctaatgtttctggtgtaattatcagcatagagaatgccgtatacctggcaaagcagggatttggtgtaactggtgctgtttcggacgccttaagcacagctggttacaataatcagacagctaggaaagttatgatccaatcaaatgacagttctgttctggaagaattcaagaagagtagttatgaacttgtttatttggttgacgataatatcagtgatattaagaactcaactttattggagatcaagacctttgcaaaatctgttgtcataaccaagaaatcagtcttccccagtgaagaagcttttatcattggtcaaacgaatgttgtgcagaagctgcagtcagcaaatctccccgtatatgtgcgactatttaataacgagtttatatctcaagcatgggacttcttctcagattcgtctgctgagttaaacaactatgttcttggagctggcgttgatggtcttgttacagaataccctggcacagcggctagataccgaaggaaccgttgtttagattacaaagacttgccaccatatatgacccctgttcaacctgggagtctcttgggactcatgactcttcagtctatgccacctgtcgaacctcccagccctgtgctcgatgtaagtgatgtgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="24660" stop="26885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24960" g_stop="25046" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25047" i_stop="25711" i_length="665">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25712" g_stop="26189" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="565" r_length="478" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26190" i_stop="26444" i_length="255">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26445" g_stop="26585" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="706" r_length="141" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E419490" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24960" e_stop="25046"/>
          <exon e_start="25712" e_stop="26189"/>
          <exon e_start="26445" e_stop="26585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATGTTGGAAAGTTTATGTCGTTAGCAGACTTCTTGACATTTTCCAAAACTGCTAATGTTTCTGGTATAATGATCAGCATAGAGGTGAGTTTCTTCAGGGACTACTGACCTTATTTATACCTATATTCTTATGCATCAATATAGTGTAAGCTCATTTCCGAATCCTAAATGCTTATAAGTTATATACTCACTCCTTATCACTCCTCATTCTAAGTGCAAATTTCATAGCTTCTTATGCTATTTCATAGGTGATTGAATGTGGGAAGCATGCCAAACTTTCCCTTGAAAGAATTTGGAACCAGAAAATGCTTTTGGAAAATGGTCTGTATATTTTCAAAAGGAAAGGATTCACTTTATGACTAGTATTTTAAAGGTTTAATCGTCTGCAAGTATATAAAGGATCTCAATATCTCCAATTTTCTGAAATATTCTCTACAAGTTACAACTAAGCAATTTTAACTGCTTTCCAAGTACAATAATGACTTCCTTTTTAGTAGTAGAATCATAATAATTCTATTTCCATTACTGAAATGAAGAATTACCCACTCAATGTTGAAAGGAATAAAGGATTATAAGCAAAACAATAAGAACTTTGACATCACAAAAAAAGAGAGGAAAGAACAGTCAAAGTAGCGACATTTTTTTTAAATGCTTACACGGGAAAAATCCTGATTTTAATGGATATCTTTGCACACTGGAGGTTTTACCTCCTTCCTCAATATTTGACACAATATTCTGGCTTCATGCAGAATGCTGCATACCTGGCAAAGCAGGGATTAGGTGTAACTGATGCGGTTTTGGATGCCCTAAGCACAGCTGGTTACAATAATCAGACAGCTAGGAAAGTTATGATCCAATCAAATGACAGTTCTGTTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTATATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAAGTAAGTTATTATATACCTTTGTTGTCTCTCATACCGTGTTCCAATCTTCCCCCTTTCCCCTTTCTTTCTCTTTTAGTTTCTCGATCTATCATCCTCAAACATCAGTATAAATGAATCTCCGGTGTAATCTGCTAGATTTGTGTATATTTTACCAGAGCATTTGCTTGGTCATATCCATTAAGTTGTTCGTGCGAAATGCAACATTAGTACTATATATCCTCAATTTGACACATTCCAATTGTTGGGAATGTACAGGGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTG</genome_strand>
        <mrna_strand>AGAAATGAAGGAAACTTTATGTCGTTAGCAGACTTCTTGACATTTTCCAAAAAGGCTAATGTTTCTGGTGTAATTATCAGCATAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCCGTATACCTGGCAAAGCAGGGATTTGGTGTAACTGGTGCTGTTTCGGACGCCTTAAGCACAGCTGGTTACAATAATCAGACAGCTAGGAAAGTTATGATCCAATCAAATGACAGTTCTGTTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTTTATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGAAGCTTTTATCATTGGTCAAACGAATGTTGTGCAGAAGCTGCAGTCAGCAAATCTCCCCGTATATGTGCGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTGCTGAGTTAAACAACTATGTTCTTGGAGCTGGCGTTGATGGTCTTGTTACAGAATACCCTGGCACAGCGGCTAGATACCGAA...............................................................................................................................................................................................................................................................GGAACCGTTGTTTAGATTACAAAGACTTGCCACCATATATGACCCCTGTTCAACCTGGGAGTCTCTTGGGACTCATGACTCTTCAGTCTATGCCACCTGTCGAACCTCCCAGCCCTGTGCTCGATGTAAGTGATGTGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E698120" ref_strand="+" ref_description="SGN-E698120 [FA05BC06]">
      <seq>cgttagcagacttcttgacattttccaaaactgctaatgtttctggtataatgatcagcatagagaatgctgcatacctggcaaagcagggattaggtgtaactgatgcggttttggatgccctaagcacagctggttacaataatcagacagctaggaaagttatgatccaatcaaatgacagttctgttctggaagaattcaagaagagtagttatgaacttgtttatttggttgacgataatatcagtgatattaagaactcaactatattggagatcaagacctttgcaaaatctgttgtcataaccaagaaatcagtcttccccagtgaagacgcttttatcattggtcaaacgaatattgtgcagaagctgcagtcagcaaatctcccggtatatgtacgactatttaataacgagtttatatctcaagcatgggacttcttctcagattcgtctactgagataaacaactatgttcttggagctggtgttgatggtcttgttacagaataccctgggacagcggctagataccgaaggaaccgttgtttagcatacaaaaacttgccaccatatatgagccctgttcaacctgggagtctcctgggactcatgactgttcagtctatgccaccagtcgaacctcccagccccgtgctcgatgtaagtgatgtgactgagccaccacttccacctgttgcaaagataaacccaagtaacgacgatggttctacagctagagctcccactactcctcccaaatggccaatcctcagttgttgctagcattctcatgagctcagttgcagttcttctagcaattttcatggtatattgatgaccatttctactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="24682" stop="27060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24982" g_stop="25046" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25047" i_stop="25711" i_length="665">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25712" g_stop="26189" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="543" r_length="478" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26190" i_stop="26444" i_length="255">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26445" g_stop="26760" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="860" r_length="317" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E698120" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24982" e_stop="25046"/>
          <exon e_start="25712" e_stop="26189"/>
          <exon e_start="26445" e_stop="26760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTAGCAGACTTCTTGACATTTTCCAAAACTGCTAATGTTTCTGGTATAATGATCAGCATAGAGGTGAGTTTCTTCAGGGACTACTGACCTTATTTATACCTATATTCTTATGCATCAATATAGTGTAAGCTCATTTCCGAATCCTAAATGCTTATAAGTTATATACTCACTCCTTATCACTCCTCATTCTAAGTGCAAATTTCATAGCTTCTTATGCTATTTCATAGGTGATTGAATGTGGGAAGCATGCCAAACTTTCCCTTGAAAGAATTTGGAACCAGAAAATGCTTTTGGAAAATGGTCTGTATATTTTCAAAAGGAAAGGATTCACTTTATGACTAGTATTTTAAAGGTTTAATCGTCTGCAAGTATATAAAGGATCTCAATATCTCCAATTTTCTGAAATATTCTCTACAAGTTACAACTAAGCAATTTTAACTGCTTTCCAAGTACAATAATGACTTCCTTTTTAGTAGTAGAATCATAATAATTCTATTTCCATTACTGAAATGAAGAATTACCCACTCAATGTTGAAAGGAATAAAGGATTATAAGCAAAACAATAAGAACTTTGACATCACAAAAAAAGAGAGGAAAGAACAGTCAAAGTAGCGACATTTTTTTTAAATGCTTACACGGGAAAAATCCTGATTTTAATGGATATCTTTGCACACTGGAGGTTTTACCTCCTTCCTCAATATTTGACACAATATTCTGGCTTCATGCAGAATGCTGCATACCTGGCAAAGCAGGGATTAGGTGTAACTGATGCGGTTTTGGATGCCCTAAGCACAGCTGGTTACAATAATCAGACAGCTAGGAAAGTTATGATCCAATCAAATGACAGTTCTGTTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTATATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAAGTAAGTTATTATATACCTTTGTTGTCTCTCATACCGTGTTCCAATCTTCCCCCTTTCCCCTTTCTTTCTCTTTTAGTTTCTCGATCTATCATCCTCAAACATCAGTATAAATGAATCTCCGGTGTAATCTGCTAGATTTGTGTATATTTTACCAGAGCATTTGCTTGGTCATATCCATTAAGTTGTTCGTGCGAAATGCAACATTAGTACTATATATCCTCAATTTGACACATTCCAATTGTTGGGAATGTACAGGGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCT-CCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTG</genome_strand>
        <mrna_strand>CGTTAGCAGACTTCTTGACATTTTCCAAAACTGCTAATGTTTCTGGTATAATGATCAGCATAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTGCATACCTGGCAAAGCAGGGATTAGGTGTAACTGATGCGGTTTTGGATGCCCTAAGCACAGCTGGTTACAATAATCAGACAGCTAGGAAAGTTATGATCCAATCAAATGACAGTTCTGTTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTATATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAA...............................................................................................................................................................................................................................................................GGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E591678" ref_strand="+" ref_description="SGN-E591678 [45395]">
      <seq>cttcatgcagaatgccccatacctggcaaagcagggattaggtgtacctgatgctgtttcgaatgccttaagcacggctggttacaataatcagacagctaggaaagttatgatccaatcaaatgacagttctgttctggaagaattcaagaagagtagttatgaacttgtttatttgattgacgaggatatcagtgatattaagaactcaactttattggagatcaagacctttgcaaaatctgttgtcataaccaagaaatcagtcttccccagtgaagacgcttttatcattggtcaaacgaatgttgtgctgaagctgcagtcagcaaatctccccgtatatgtacgactatttaataacgagtttatatctcaagcatgggacttcttctcagattcgtctgctgagttaaacaactatgttcttggagctggcgttgatggtcttgttacagaataccctggcacagcggctagataccgaaggaaccgttgtttagcgtacaaagacttgccaccatatatgcgccctgttcaacctgggagtctcttgggactcatgactcttcagtctatgccacccatcgaacctcccagccccgtgctcgatgtaagtgatgtgactgagccacctcttccacctgttgcaaagattaagccaagtaatgacaatggttctacagctagagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="25402" stop="26950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25702" g_stop="26189" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26190" i_stop="26444" i_length="255">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26445" g_stop="26650" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="694" r_length="206" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E591678" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25702" e_stop="26189"/>
          <exon e_start="26445" e_stop="26650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATGCAGAATGCTGCATACCTGGCAAAGCAGGGATTAGGTGTAACTGATGCGGTTTTGGATGCCCTAAGCACAGCTGGTTACAATAATCAGACAGCTAGGAAAGTTATGATCCAATCAAATGACAGTTCTGTTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTATATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAAGTAAGTTATTATATACCTTTGTTGTCTCTCATACCGTGTTCCAATCTTCCCCCTTTCCCCTTTCTTTCTCTTTTAGTTTCTCGATCTATCATCCTCAAACATCAGTATAAATGAATCTCCGGTGTAATCTGCTAGATTTGTGTATATTTTACCAGAGCATTTGCTTGGTCATATCCATTAAGTTGTTCGTGCGAAATGCAACATTAGTACTATATATCCTCAATTTGACACATTCCAATTGTTGGGAATGTACAGGGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCT</genome_strand>
        <mrna_strand>CTTCATGCAGAATGCCCCATACCTGGCAAAGCAGGGATTAGGTGTACCTGATGCTGTTTCGAATGCCTTAAGCACGGCTGGTTACAATAATCAGACAGCTAGGAAAGTTATGATCCAATCAAATGACAGTTCTGTTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGATTGACGAGGATATCAGTGATATTAAGAACTCAACTTTATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATGTTGTGCTGAAGCTGCAGTCAGCAAATCTCCCCGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTGCTGAGTTAAACAACTATGTTCTTGGAGCTGGCGTTGATGGTCTTGTTACAGAATACCCTGGCACAGCGGCTAGATACCGAA...............................................................................................................................................................................................................................................................GGAACCGTTGTTTAGCGTACAAAGACTTGCCACCATATATGCGCCCTGTTCAACCTGGGAGTCTCTTGGGACTCATGACTCTTCAGTCTATGCCACCCATCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCTCTTCCACCTGTTGCAAAGATTAAGCCAAGTAATGACAATGGTTCTACAGCTAGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E589850" ref_strand="+" ref_description="SGN-E589850 [43434]">
      <seq>ggcaaagcagggattaggtgtaactgatgctgtttcggacgccttaagcacagctggttacaataatcagacagctaagaaagttatgatccaatcaaatgacagttctgttctggaagaattcaagaagagtagttatgaacttgtttatttggttgacgatgatatcagtgatattaagaactcaactttattggagatcaagacctttgcaaaatctgttgtcataaccaagaaatcagtcttccccagtgaagatgcttttatcattggtcaaacgaatgttgtgcagaagctgcagtcagcaaatctccccgtatatgtacgactatttaataacgagtttgtttctcaagcatgggacttcttctcagattcgtctgctgagttaaacaactatgttcttggagctggagttgatggtcttgttacagaataccctggcacagcggctagataccgaaggaaccgttgtttagcatacaaagacttgccatcatatatgagccctgttcaacctgggagtctcctgggactcatgactgttcagtctatgccaccagtcgaacctcccaaccccgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="25426" stop="26863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25726" g_stop="26189" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26190" i_stop="26444" i_length="255">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26445" g_stop="26563" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="583" r_length="119" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E589850" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25726" e_stop="26189"/>
          <exon e_start="26445" e_stop="26563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAAGCAGGGATTAGGTGTAACTGATGCGGTTTTGGATGCCCTAAGCACAGCTGGTTACAATAATCAGACAGCTAGGAAAGTTATGATCCAATCAAATGACAGTTCTGTTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTATATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAAGTAAGTTATTATATACCTTTGTTGTCTCTCATACCGTGTTCCAATCTTCCCCCTTTCCCCTTTCTTTCTCTTTTAGTTTCTCGATCTATCATCCTCAAACATCAGTATAAATGAATCTCCGGTGTAATCTGCTAGATTTGTGTATATTTTACCAGAGCATTTGCTTGGTCATATCCATTAAGTTGTTCGTGCGAAATGCAACATTAGTACTATATATCCTCAATTTGACACATTCCAATTGTTGGGAATGTACAGGGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTG</genome_strand>
        <mrna_strand>GGCAAAGCAGGGATTAGGTGTAACTGATGCTGTTTCGGACGCCTTAAGCACAGCTGGTTACAATAATCAGACAGCTAAGAAAGTTATGATCCAATCAAATGACAGTTCTGTTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATGATATCAGTGATATTAAGAACTCAACTTTATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGATGCTTTTATCATTGGTCAAACGAATGTTGTGCAGAAGCTGCAGTCAGCAAATCTCCCCGTATATGTACGACTATTTAATAACGAGTTTGTTTCTCAAGCATGGGACTTCTTCTCAGATTCGTCTGCTGAGTTAAACAACTATGTTCTTGGAGCTGGAGTTGATGGTCTTGTTACAGAATACCCTGGCACAGCGGCTAGATACCGAA...............................................................................................................................................................................................................................................................GGAACCGTTGTTTAGCATACAAAGACTTGCCATCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAACCCCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E578282" ref_strand="+" ref_description="SGN-E578282 [LE12BG11]">
      <seq>ttctggaagaattcaagaagagtagttatgaacttgtttatttggttgacgataatatcagtgatattaagaactcaactatattggagatcaagacctttgcaaaatctgttgtcataaccaagaaatcagtcttccccagtgaagacgcttttatcattggtcaaacgaatattgtgcagaagctgcagtcagcaaatctcccggtatatgtacgactatttaataacgagtttatatctcaagcatgggacttcttctcagattcgtctactgagataaacaactatgttcttggagctggtgttgatggtcttgttacagaataccctgggacagcggctagataccgaaggaaccgttgtttagcatacaaaaacttgccaccatatatgagccctgttcaacctgggagtctcctgggactcatgactgttcagtctatgccaccagtcgaacctcccagccccgtgctcgatgtaagtgatgtgactgagccaccacttccacctgttgcaaagataaacccaagtaacgacgatggttctacagctagagctcccactactcctccaaatggccaatcctcagttgttgctagcattctcatgagctcagttgcagttcttctagcaattttcatggtatattgatgaccatttctactttggtgccaccattttgtacaatgttgtttgccatcttactgatcaaacctccctctggtgattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="25536" stop="27124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25836" g_stop="26189" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26190" i_stop="26444" i_length="255">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26445" g_stop="26824" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="734" r_length="380" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E578282" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25836" e_stop="26189"/>
          <exon e_start="26445" e_stop="26824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTATATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAAGTAAGTTATTATATACCTTTGTTGTCTCTCATACCGTGTTCCAATCTTCCCCCTTTCCCCTTTCTTTCTCTTTTAGTTTCTCGATCTATCATCCTCAAACATCAGTATAAATGAATCTCCGGTGTAATCTGCTAGATTTGTGTATATTTTACCAGAGCATTTGCTTGGTCATATCCATTAAGTTGTTCGTGCGAAATGCAACATTAGTACTATATATCCTCAATTTGACACATTCCAATTGTTGGGAATGTACAGGGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATG</genome_strand>
        <mrna_strand>TTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTATATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAA...............................................................................................................................................................................................................................................................GGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATGTTGTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E291636" ref_strand="+" ref_description="SGN-E291636 [cLET-6-N12]">
      <seq>tcaagaagagtagttatgaacttgtttatttggttgacgataatatcagtgatattaagaactcaactatattggagatcaagacctttgcaaaatctgttgtcataaccaagaaatcagtcttccccagtgaagacgcttttatcattggtcaaacgaatattgtgcagaagctgcagtcagcaaatctcccggtatatgtacgactatttaataacgagtttatatctcaagcatgggacttcttctcagattcgtctactgagataaacaactatgttcttggagctggtgttgatggtcttgttacagaataccctgggacagcggctagataccgaaggaaccgttgtttagcatacaaaaacttgccaccatatatgagccctgttcaacctgggagtctcctgggactcatgactgttcagtctatgccaccagtcgaacctcccagccccgtgctcgatgtaagtgatgtgactgagccaccacttccacctgttgcaaagataaacccaagtaacgacgatggttctacagctagagctcccactactcctncaaatggccaatcctcagttgttgctagcattctcatgagctcagttgcagttcttctagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="25548" stop="27025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25848" g_stop="26189" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26190" i_stop="26444" i_length="255">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26445" g_stop="26725" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="623" r_length="281" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E291636" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25848" e_stop="26189"/>
          <exon e_start="26445" e_stop="26725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTATATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAAGTAAGTTATTATATACCTTTGTTGTCTCTCATACCGTGTTCCAATCTTCCCCCTTTCCCCTTTCTTTCTCTTTTAGTTTCTCGATCTATCATCCTCAAACATCAGTATAAATGAATCTCCGGTGTAATCTGCTAGATTTGTGTATATTTTACCAGAGCATTTGCTTGGTCATATCCATTAAGTTGTTCGTGCGAAATGCAACATTAGTACTATATATCCTCAATTTGACACATTCCAATTGTTGGGAATGTACAGGGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCA</genome_strand>
        <mrna_strand>TCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTATATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAA...............................................................................................................................................................................................................................................................GGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTNCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E403226" ref_strand="+" ref_description="SGN-E403226 [PPC-10-A23]">
      <seq>gaaatcagtcttccccagtgaagatgcttttatcattggtcaaacgaatgttgtgcagaagctgcagtcagcaaatctccccgtatatgtacgactatttaataacgagtttgtttctcaagcatgggacttcttctcagattcgtctgctgagttaaacaactatgttcttggagctggagttgatggtcttgttacagaataccctggcacagcggctagataccgaaggaaccgttgtttagcatacaaagacttgccatcatatatgagccctgttcaacctgggagtctcctgggactcatgactgttcagtctatgccaccagtcgaacctcccaaccccgtgctcgatgtaagtgatgtgactgagccacctcttccacctgttgcaaagataaacccaagtaatgacaatggttctacagctagacctcccactactgctccaaatggccaatcctcaattgttgctagcattctcatgagctcagtcgcagttcttctagcaattttcatggtatattgatgaccatttctgccttggtgccaccattttgtacaatttgttttaccatcttgctgatcaaacctctctctggtgattatggaatcgcacatgatggcggcagtagtctcgggtcagctcatttaacacgtgattgtttccttgtatttgcgatgtatcaaaattttcagctcttgtttattctttacattcttcctcgtttctatttttcatcccctcttttccattttgggtctgattgagtgggtgtctgggggttattgcctattcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="25660" stop="27323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25960" g_stop="26189" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26190" i_stop="26444" i_length="255">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26445" g_stop="27023" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="804" r_length="574" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E403226" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25960" e_stop="26189"/>
          <exon e_start="26445" e_stop="27023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAAGTAAGTTATTATATACCTTTGTTGTCTCTCATACCGTGTTCCAATCTTCCCCCTTTCCCCTTTCTTTCTCTTTTAGTTTCTCGATCTATCATCCTCAAACATCAGTATAAATGAATCTCCGGTGTAATCTGCTAGATTTGTGTATATTTTACCAGAGCATTTGCTTGGTCATATCCATTAAGTTGTTCGTGCGAAATGCAACATTAGTACTATATATCCTCAATTTGACACATTCCAATTGTTGGGAATGTACAGGGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGC-G--G--T--AGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTTTTCCATTTTGGGTCAGATTGAGTGGGTGTCTGGGGTTTATTGCCTATTTATTTG</genome_strand>
        <mrna_strand>GAAATCAGTCTTCCCCAGTGAAGATGCTTTTATCATTGGTCAAACGAATGTTGTGCAGAAGCTGCAGTCAGCAAATCTCCCCGTATATGTACGACTATTTAATAACGAGTTTGTTTCTCAAGCATGGGACTTCTTCTCAGATTCGTCTGCTGAGTTAAACAACTATGTTCTTGGAGCTGGAGTTGATGGTCTTGTTACAGAATACCCTGGCACAGCGGCTAGATACCGAA...............................................................................................................................................................................................................................................................GGAACCGTTGTTTAGCATACAAAGACTTGCCATCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAACCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCTCTTCCACCTGTTGCAAAGATAAACCCAAGTAATGACAATGGTTCTACAGCTAGACCTCCCACTACTGCTCCAAATGGCCAATCCTCAATTGTTGCTAGCATTCTCATGAGCTCAGTCGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTGCCTTGGTGCCACCATTTTGTACAATTTGTTTTACCATCTTGCTGATCAAACCTCTCTCTGGTGATTATGGAATCGCACATGATGGCGGCAGTAGTCTCGGGTCAGCTCATTTAACACGTGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCA-T-C--CCCT---C-----TTTTCCATTTTGGGTCTGATTGAGTGGGTGTCTGGGGGTTATTGCCTATTCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E714002" ref_strand="+" ref_description="SGN-E714002 [FB10BA05]">
      <seq>cagaagctgcagtcagcaaatctcccggtatatgtacgactatttaataacgagtttatatctcaagcatgggacttcttctcagattcgtctactgagataaacaactatgttcttggagctggtgttgatggtcttgttacagaataccctgggacagcggctagataccgaaggaaccgttgtttagcatacaaaaacttgccaccatatatgagccctgttcaacctgggagtctcctgggactcatgactgttcagtctatgccaccagtcgaacctcccagccccgtgctcgatgtaagtgatgtgactgagccaccacttccacctgttgcaaagataaacccaagtaacgacgatggttctacagctagagctcccactactcctccaaatggccaatcctcagttgttgctagcattctcatgagctcagttgcagttcttctagcaattttcatggtatattgatgaccatttctactttggtgccaccattttgtacaatttgttttgccatcttactgatcaaacctccctctggtgattatggagtcgcacatgatggcggcggtagtcagctcatttaacacatgattgtttccttgtatttgcgatgtatcaaaattttcagctcttgtttattctttacattcttcctcgtttctatttttcattccttccctcccctttttttttccattttgggtcagattgagtgggtgtctggggtttattgcctatttatttgtaagaattctgttttggatataagcaatgatcaatttagttagtatttttcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="25715" stop="27377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26015" g_stop="26189" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26190" i_stop="26444" i_length="255">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26445" g_stop="27078" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="809" r_length="634" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E714002" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26015" e_stop="26189"/>
          <exon e_start="26445" e_stop="27078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAAGTAAGTTATTATATACCTTTGTTGTCTCTCATACCGTGTTCCAATCTTCCCCCTTTCCCCTTTCTTTCTCTTTTAGTTTCTCGATCTATCATCCTCAAACATCAGTATAAATGAATCTCCGGTGTAATCTGCTAGATTTGTGTATATTTTACCAGAGCATTTGCTTGGTCATATCCATTAAGTTGTTCGTGCGAAATGCAACATTAGTACTATATATCCTCAATTTGACACATTCCAATTGTTGGGAATGTACAGGGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTTTTCCATTTTGGGTCAGATTGAGTGGGTGTCTGGGGTTTATTGCCTATTTATTTGTAAGAATTCTGTTTTGGATATAAGCAATGATCAATTTAGTTAGTATTTTTCATAC</genome_strand>
        <mrna_strand>CAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAA...............................................................................................................................................................................................................................................................GGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTTTTCCATTTTGGGTCAGATTGAGTGGGTGTCTGGGGTTTATTGCCTATTTATTTGTAAGAATTCTGTTTTGGATATAAGCAATGATCAATTTAGTTAGTATTTTTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E715259" ref_strand="+" ref_description="SGN-E715259 [FB13DB05]">
      <seq>cataagctgcagtcagcaaatctcccggtatatgtacgactatttaataacgagtttatatctcaagcatgggacttcttctcagattcgtctactgagataaacaactatgttcttggagctggtgttgatggtcttgttacagaataccctgggacagcggctagataccgaaggaaccgttgtttagcatacaaaaacttgccaccatatatgagccctgttcaacctgggagtctcctgggactcatgactgttcagtctatgccaccagtcgaacctcccagccccgtgctcgatgtaagtgatgtgactgagccaccacttccacctgttgcaaagataaacccaagtaacgacgatggttctacagctagagctcccactactcctccaaatggccaatcctcagttgttgctagcattctcatgagctcagttgcagttcttctagcaattttcatggtatattgatgaccatttctactttggtgccaccattttgtacaatttgttttgccatcttactgatcaaacctccctctggtgattatggagtcgcacatgatggcggcggtagtcagctcatttaacacatgattgtttccttgtatttgcgatgtatcaaaattttcagctcttgtttattctttacattcttcctcgtttctatttttcattccttccctcccctttttttttccattttgggtcagattgagtgggtgtctggggtttattgcctatttatttgtaagaattctgttttggatataagcaatgatcaatttcgttagcatttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="25715" stop="27374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26015" g_stop="26189" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26190" i_stop="26444" i_length="255">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26445" g_stop="27074" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="805" r_length="630" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E715259" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26015" e_stop="26189"/>
          <exon e_start="26445" e_stop="27074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAAGTAAGTTATTATATACCTTTGTTGTCTCTCATACCGTGTTCCAATCTTCCCCCTTTCCCCTTTCTTTCTCTTTTAGTTTCTCGATCTATCATCCTCAAACATCAGTATAAATGAATCTCCGGTGTAATCTGCTAGATTTGTGTATATTTTACCAGAGCATTTGCTTGGTCATATCCATTAAGTTGTTCGTGCGAAATGCAACATTAGTACTATATATCCTCAATTTGACACATTCCAATTGTTGGGAATGTACAGGGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTTTTCCATTTTGGGTCAGATTGAGTGGGTGTCTGGGGTTTATTGCCTATTTATTTGTAAGAATTCTGTTTTGGATATAAGCAATGATCAATTTAGTTAGTATTTTTC</genome_strand>
        <mrna_strand>CATAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAA...............................................................................................................................................................................................................................................................GGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTTTTCCATTTTGGGTCAGATTGAGTGGGTGTCTGGGGTTTATTGCCTATTTATTTGTAAGAATTCTGTTTTGGATATAAGCAATGATCAATTTCGTTAGCATTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E298233" ref_strand="+" ref_description="SGN-E298233 [cLEW-18-A2]">
      <seq>ttcttctcatattcgtctactgagataaacaactatgttctgtggagctggtgtggatggtcttgttacataataccctgcgacancggctagataccgaaggaaccgttgtttagcatacaaaaacttgccaccatatatgagccctgttcaacctgggagtctcctgggactcatgactgttcagtctatgccaccagtcgaacctcccagccccgtgctcgatgtaagtgatgtgactgagccaccacttccacctgttgcaaagataaacccaagtaacgacgatggttctacagctagagctcccactactcctccaaatggccaatcctcagttgttgctagcattctcatgagctcagttgcagttcttctagcaattttcatggtatattgatgaccatttctactttggtgccaccattttgtacaatttgttttgccatcttactgatcaaacctccctctggtgattatggagtcgcacatgatggcggcggtagtcaactcatttaacacatgattgtttccttgtatttgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="25790" stop="27188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26090" g_stop="26189" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26190" i_stop="26444" i_length="255">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26445" g_stop="26888" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="545" r_length="444" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E298233" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26090" e_stop="26189"/>
          <exon e_start="26445" e_stop="26888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCT-TGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAAGTAAGTTATTATATACCTTTGTTGTCTCTCATACCGTGTTCCAATCTTCCCCCTTTCCCCTTTCTTTCTCTTTTAGTTTCTCGATCTATCATCCTCAAACATCAGTATAAATGAATCTCCGGTGTAATCTGCTAGATTTGTGTATATTTTACCAGAGCATTTGCTTGGTCATATCCATTAAGTTGTTCGTGCGAAATGCAACATTAGTACTATATATCCTCAATTTGACACATTCCAATTGTTGGGAATGTACAGGGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCG</genome_strand>
        <mrna_strand>TTCTTCTCATATTCGTCTACTGAGATAAACAACTATGTTCTGTGGAGCTGGTGTGGATGGTCTTGTTACATAATACCCTGCGACANCGGCTAGATACCGAA...............................................................................................................................................................................................................................................................GGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAACTCATTTAACACATGATTGTTTCCTTGTATTTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E311051" ref_strand="+" ref_description="SGN-E311051 [cLEZ-17-B2]">
      <seq>cctgggacagcggctagataccgaaggaaccgttgtttagcatacaaaaacttgccaccatatatgagccctgttcaacctgggagtctcctgggactcatgactgttcagtctatgccaccagtcgaacctcccagccccgtgctcgatgtaagtgatgtgactgagccaccacttccacctgttgcaaagataaacccaagtaacgacgatggttctacagctagagctcccactactcctccaaatggccaatcctcagttgttgctagcattctcatgagctcagttgcagttcttctagcaattttcatggtatattgatgaccatttctactttggtgccaccattttgtacaatttgttttgccatcttactgatcaaacctccctctggtgattatggagtcgcacatgatggcggcggtagtcagctcatttaacacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="25865" stop="27169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26165" g_stop="26189" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26190" i_stop="26444" i_length="255">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26445" g_stop="26869" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="450" r_length="425" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E311051" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26165" e_stop="26189"/>
          <exon e_start="26445" e_stop="26869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGGACAGCGGCTAGATACCGAAGTAAGTTATTATATACCTTTGTTGTCTCTCATACCGTGTTCCAATCTTCCCCCTTTCCCCTTTCTTTCTCTTTTAGTTTCTCGATCTATCATCCTCAAACATCAGTATAAATGAATCTCCGGTGTAATCTGCTAGATTTGTGTATATTTTACCAGAGCATTTGCTTGGTCATATCCATTAAGTTGTTCGTGCGAAATGCAACATTAGTACTATATATCCTCAATTTGACACATTCCAATTGTTGGGAATGTACAGGGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGA</genome_strand>
        <mrna_strand>CCTGGGACAGCGGCTAGATACCGAA...............................................................................................................................................................................................................................................................GGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E310941" ref_strand="+" ref_description="SGN-E310941 [cLEZ-17-B14]">
      <seq>ggctagattccgaaggaaccgttgtttagcatacaaaaacttgccaccatatatgagccctgttcaacctgggagtctcctgggactcatgactgttcaatctatgccaccagtcgaacctcccagccccgtgctcgatgtaagtgatgtgactgagccaccacttccacctgttgcaaagataaacccaagtaacgacgatggttctacagctagagctcccactactcctccaaatggccaatcctcagttgttgctagcattctcatgagctcagttgcagttcttctagcaattttcatggtatattgatgaccatttctactttggtgccaccattttgtacaatttgttttgccatcttactgatcaaacctccctctggtgattatggagtcgcacatgatggcggcggtagtcagctcatttaacacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="26137" stop="27168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26176" g_stop="26189" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26190" i_stop="26444" i_length="255">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26445" g_stop="26868" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="438" r_length="424" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E310941" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26176" e_stop="26189"/>
          <exon e_start="26445" e_stop="26868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTAGATACCGAAGTAAGTTATTATATACCTTTGTTGTCTCTCATACCGTGTTCCAATCTTCCCCCTTTCCCCTTTCTTTCTCTTTTAGTTTCTCGATCTATCATCCTCAAACATCAGTATAAATGAATCTCCGGTGTAATCTGCTAGATTTGTGTATATTTTACCAGAGCATTTGCTTGGTCATATCCATTAAGTTGTTCGTGCGAAATGCAACATTAGTACTATATATCCTCAATTTGACACATTCCAATTGTTGGGAATGTACAGGGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATG</genome_strand>
        <mrna_strand>GGCTAGATTCCGAA...............................................................................................................................................................................................................................................................GGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAATCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E733779" ref_strand="+" ref_description="SGN-E733779 [LB10DF12]">
      <seq>ttgggaatgtacagggaaccgttgtttagcatacaaaaacttgccaccatatatgagccctgttcaacctgggagtctcctgggactcatgactgttcagtctatgccaccagtcgaacctcccagccccgtgctcgatgtaagtgatgtgactgagccaccacttccacctgttgcaaagataaacccaagtaacgacgatggttctacagctagagctcccactactcctccaaatggccaatcctcagttgttgctagcattctcatgagctcagttgcagttcttctagcaattttcatggtatattgatgaccatttctactttggtgccaccattttgtacaatttgttttgccatcttactgatcaaacctccctctggtgattatggagtcgcacatgatggcggcggtagtcagctcatttaacacatgattgtttccttgtatttgcgatgtatcaaaattttcagctcttgtttattctttacattcttcctcgtttctatttttcattccttccctcccctttttttttccattttgggtcagattgagtgggtgtctggggtttattgcctatttatttgtaagaattctgttttggatataagcaatgatcaatttagttagtatttttcataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="26131" stop="27381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26431" g_stop="27086" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E733779" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26431" e_stop="27086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGAATGTACAGGGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTTTTCCATTTTGGGTCAGATTGAGTGGGTGTCTGGGGTTTATTGCCTATTTATTTGTAAGAATTCTGTTTTGGATATAAGCAATGATCAATTTAGTTAGTATTTTTCATACACAGCCTT</genome_strand>
        <mrna_strand>TTGGGAATGTACAGGGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTTTTCCATTTTGGGTCAGATTGAGTGGGTGTCTGGGGTTTATTGCCTATTTATTTGTAAGAATTCTGTTTTGGATATAAGCAATGATCAATTTAGTTAGTATTTTTCATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E373207" ref_strand="+" ref_description="SGN-E373207 [TUS-32-O17]">
      <seq>tttttttttgaaaaatactaactaaattgatcattgcttatatccaaaacagaattcttacaaataaataggcaataaaccccagacacccactcaatctgacccaaaatggaaaaaaaaaggggagggaaggaatgaaaaatagaaacgaggaagaatgtaaagaataaacaagagctgaaaattttgatacatcgcaaatacaaggaaacaatcatgtgttaaatgagctgactaccgccgccatcatgtgcgactccataatcaccagagggaggtttgatcagtaagatggcaaaacaaattgtacaaaatggtggcaccaaagtagaaatggtcatcaatataccatgaaaattgctagaagaactgcaactgagctcatgagaatgctagcaacaactgaggattggccatttggaggagtagtgggagctctagctgtagaaccatcgtcgttacttgggtttatctttgcaacaggtggaagtggtggctcagtcacatcacttacatcgagcacggggctgggaggttcgactggtggcatagactgaacagtcatgagtcccaggagactcccaggttgaacagggctcatatatggtggcaagtttttgtatgctaaacaacggttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="27381" stop="26145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27083" g_stop="26444" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E373207" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27083" e_stop="26444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTGTATGAAAAATACTAACTAAATTGATCATTGCTTATATCCAAAACAGAATTCTTACAAATAAATAGGCAATAAACCCCAGACACCCACTCAATCTGACCCAAAATGGAAAAAAAAAGGGGAGGGAAGGAATGAAAAATAGAAACGAGGAAGAATGTAAAGAATAAACAAGAGCTGAAAATTTTGATACATCGCAAATACAAGGAAACAATCATGTGTTAAATGAGCTGACTACCGCCGCCATCATGTGCGACTCCATAATCACCAGAGGGAGGTTTGATCAGTAAGATGGCAAAACAAATTGTACAAAATGGTGGCACCAAAGTAGAAATGGTCATCAATATACCATGAAAATTGCTAGAAGAACTGCAACTGAGCTCATGAGAATGCTAGCAACAACTGAGGATTGGCCATTTGGAGGAGTAGTGGGAGCTCTAGCTGTAGAACCATCGTCGTTACTTGGGTTTATCTTTGCAACAGGTGGAAGTGGTGGCTCAGTCACATCACTTACATCGAGCACGGGGCTGGGAGGTTCGACTGGTGGCATAGACTGAACAGTCATGAGTCCCAGGAGACTCCCAGGTTGAACAGGGCTCATATATGGTGGCAAGTTTTTGTATGCTAAACAACGGTTCCC</genome_strand>
        <mrna_strand>TTTTTTTTTGAAAAATACTAACTAAATTGATCATTGCTTATATCCAAAACAGAATTCTTACAAATAAATAGGCAATAAACCCCAGACACCCACTCAATCTGACCCAAAATGGAAAAAAAAAGGGGAGGGAAGGAATGAAAAATAGAAACGAGGAAGAATGTAAAGAATAAACAAGAGCTGAAAATTTTGATACATCGCAAATACAAGGAAACAATCATGTGTTAAATGAGCTGACTACCGCCGCCATCATGTGCGACTCCATAATCACCAGAGGGAGGTTTGATCAGTAAGATGGCAAAACAAATTGTACAAAATGGTGGCACCAAAGTAGAAATGGTCATCAATATACCATGAAAATTGCTAGAAGAACTGCAACTGAGCTCATGAGAATGCTAGCAACAACTGAGGATTGGCCATTTGGAGGAGTAGTGGGAGCTCTAGCTGTAGAACCATCGTCGTTACTTGGGTTTATCTTTGCAACAGGTGGAAGTGGTGGCTCAGTCACATCACTTACATCGAGCACGGGGCTGGGAGGTTCGACTGGTGGCATAGACTGAACAGTCATGAGTCCCAGGAGACTCCCAGGTTGAACAGGGCTCATATATGGTGGCAAGTTTTTGTATGCTAAACAACGGTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E338255" ref_strand="+" ref_description="SGN-E338255 [cTOE-13-C6]">
      <seq>ggaaccgctgtttagcatacaaaaacttgccaccatatatgagccctgttcaacctgggagtctcctgggactcatgactgttcagtctatgccaccagtcgaacctcccagccccgtgctcgatgtaagtgatgtgactgagccaccactttcacctgttgcaaagataaacccaagtaacgacgatggttctacagctagagctcccactactcctccaaatggccaatcctcagttgttgctagcattctcatgagctcagttgcagttcttctagcaattttcatggtatattgatgaccatttctactttggtgccaccattttgtacaatttgttttgccatcttactgatcaaacctccctctggtgattatggagtcgcacatgatggcggcggtagtcagctcatttaacacatgattgtttgcttgtatttgcgatgtatcaaaactttcagctcttggttattctttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="26145" stop="27225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26445" g_stop="26925" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E338255" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26445" e_stop="26925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACA</genome_strand>
        <mrna_strand>GGAACCGCTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTTCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTGCTTGTATTTGCGATGTATCAAAACTTTCAGCTCTTGGTTATTCTTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E294986" ref_strand="+" ref_description="SGN-E294986 [cLET-17-F24]">
      <seq>caacctgggagtctcctgggactcatgactgttcagtctatgccaccagtcgaacctcccagccccgtgctcgatgtaagtgatgtgactgagccaccacttccacctgttgcaaagataaacccaagtaacgacgatggttctacagctagagctcccactactcctccaaatggccaatcctcagttgttgctagcattctcatgagctcagatgcagttcttctagcaattttcatggtatattgatgaccatttctactttggtgccaccattttgtacaatttgttttgccatcttactgatcaaacctccctctggtgattatggagtcgcacatgatggcggcggtagtcagctcatttaacacatgattgtttccttgtatttgcgatgtatcaaaattttcagctcttgtttattctttacattcttcctcgtttctatttttcattccttccctccccttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="26195" stop="27269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26495" g_stop="26969" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E294986" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26495" e_stop="26969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTT</genome_strand>
        <mrna_strand>CAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGATGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E429359" ref_strand="-" ref_description="SGN-E429359 [STM-51-N16]">
      <seq>ggactcatgactcttcagtctatgccacccatcgaacctcccagccccgtgctcgatgtaagtgatgtgactgagccacctcttccacctgttgcaaagataaagccaagtaatgacaatggttctacagctagagctcccactactgctccaaatggccaatcctcagttgttgctagcattctcatgagctcagtcgcagttcttctagcaattttcatggtatattgatgaccatttctgccttggtgccaccattttgtacaatttgttttaccatcttgctgatcaaacctctctctggtgattatggagtcgcacatgatggcggcggtagtctcgggtcagctcatttaacacgtgattgtttccttgtatttgcgatgtatcaaaattttcagcttttgtttattctttacattcttcctcgtttctatttttcatcccttccctcccgtttttttccattttgggtcagattgtgtgggtgtctggggtttattgcctatttatttgtaagaattctgtatggatataagcaatgatcaacgtagttagtatttttcatacagagacttttttttccattcatgtaatataagattgcaaataaatattgcggaccattgttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="26213" stop="27440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26513" g_stop="27135" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="632" polyA_stop="645"/>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E429359" ref_strand="-">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E429359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26513" e_stop="27135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTA-------GTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTTTTCCATTTTGGGTCAGATTGAGTGGGTGTCTGGGGTTTATTGCCTATTTATTTGTAAGAATTCTGTTTTGGATATAAGCAATGATCAATTTAGTTAGTATTTTTCATACACAGCCTTTTTATATTCTATTCATGTAATATAAAATTGCAAATAAATGTTGCAGACC</genome_strand>
        <mrna_strand>GGACTCATGACTCTTCAGTCTATGCCACCCATCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCTCTTCCACCTGTTGCAAAGATAAAGCCAAGTAATGACAATGGTTCTACAGCTAGAGCTCCCACTACTGCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTCGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTGCCTTGGTGCCACCATTTTGTACAATTTGTTTTACCATCTTGCTGATCAAACCTCTCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCTCGGGTCAGCTCATTTAACACGTGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTTTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATCCCTTCCCT-CCC-GTTTTTTTCCATTTTGGGTCAGATTGTGTGGGTGTCTGGGGTTTATTGCCTATTTATTTGTAAGAATTCTG-TATGGATATAAGCAATGATCAACGTAGTTAGTATTTTTCATACAGAGACTTTTT-T-TTCCATTCATGTAATATAAGATTGCAAATAAATATTGCGGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E419491" ref_strand="+" ref_description="SGN-E419491 [STM-29-P9]">
      <seq>ttgcttatatccaatacagaattcttacaaataaatggggcaataaaccccagacacccactcaatctgacccaaaatggaaaaaaaggggagggaagggatgaaaaatagaaacgaggaagaatgtaaagaataaacaagagctgaaaaatttgatacatcgcaaatacaaggaaacaatcacgtgttacatgagctgacccaagactaccgccgccatcatgtgcgactccataatcaccagagagaggtttgatcagtaagatggcaaaacaaattgtacaaaatggtggcaccaaggcagaaatggtcaccaatataccatgaaaattgctagaagaactgcgactgagctcatgagaatgctagcaacaactgaggattggccatttggagcagtagtgggagctctagctgtagaactattgtcattacttgggtttatctttgcaacaggtggaagaggtggctcagtcacatcacttacatcgagcacagggctggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="27350" stop="26251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27050" g_stop="26551" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E419491" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E419491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27050" e_stop="26551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTTATATCCAAAACAGAATTCTTACAAATAAAT-AGGCAATAAACCCCAGACACCCACTCAATCTGACCCAAAATGGAAAAAAAAAGGGGAGGGAAGGAATGAAAAATAGAAACGAGGAAGAATGTAAAGAATAAACAAGAGCTGAAAATTTTGATACATCGCAAATACAAGGAAACAATCATGTGTTAAATGAGCT-------GACTACCGCCGCCATCATGTGCGACTCCATAATCACCAGAGGGAGGTTTGATCAGTAAGATGGCAAAACAAATTGTACAAAATGGTGGCACCAAAGTAGAAATGGTCATCAATATACCATGAAAATTGCTAGAAGAACTGCAACTGAGCTCATGAGAATGCTAGCAACAACTGAGGATTGGCCATTTGGAGGAGTAGTGGGAGCTCTAGCTGTAGAACCATCGTCGTTACTTGGGTTTATCTTTGCAACAGGTGGAAGTGGTGGCTCAGTCACATCACTTACATCGAGCACGGGGCTGGGA</genome_strand>
        <mrna_strand>TTGCTTATATCCAATACAGAATTCTTACAAATAAATGGGGCAATAAACCCCAGACACCCACTCAATCTGACCCAAAATGGAAA-AA-AAGGGGAGGGAAGGGATGAAAAATAGAAACGAGGAAGAATGTAAAGAATAAACAAGAGCTGAAAAATTTGATACATCGCAAATACAAGGAAACAATCACGTGTTACATGAGCTGACCCAAGACTACCGCCGCCATCATGTGCGACTCCATAATCACCAGAGAGAGGTTTGATCAGTAAGATGGCAAAACAAATTGTACAAAATGGTGGCACCAAGGCAGAAATGGTCACCAATATACCATGAAAATTGCTAGAAGAACTGCGACTGAGCTCATGAGAATGCTAGCAACAACTGAGGATTGGCCATTTGGAGCAGTAGTGGGAGCTCTAGCTGTAGAACTATTGTCATTACTTGGGTTTATCTTTGCAACAGGTGGAAGAGGTGGCTCAGTCACATCACTTACATCGAGCACAGGGCTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E440704" ref_strand="-" ref_description="SGN-E440704 [cSTA-18-H6]">
      <seq>cccagccctgtgctcgatgtaagtgatgtgactgagccacctcttccacctgttgcaaagataaacccaagtaatgacaatagttctacagctagagctcccactactgctccaaatggccaatcctcagttgttgctagcattctcatgagctcagtcgcagttcttctagcaattttcatggtatattggtgaccatttctgccttggtgccaccattttgtacaatttgttttgccatcttactgatcaaacctctctctggtgattatggagtcgcacatgatggcggcggtagtcttgggtcagctcatgtaacacgtgattgtttccttgtatttgcgatgtatcaaatttttcagctcttgtttattctttacattcttcctcgtttctatttttcatcccttccctcccctttttttccattttgggtcagattgagtgggtgtctggggtttattgccccatttatttgtaagaattctgtattggatataagcaatgatcaacgtagttagtatttttcatgaagaaaaaaaaaaaaaaaaaaactcgagactagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="26252" stop="35209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26552" g_stop="27079" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27080" i_stop="30233" i_length="3154">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30234" g_stop="30263" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="564" r_length="30" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E440704" ref_strand="-">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440704" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26552" e_stop="27079"/>
          <exon e_start="30234" e_stop="30263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTA-------GTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTTTTCCATTTTGGGTCAGATTGAGTGGGTGTCTGGGGTTTATTG-CCTATTTATTTGTAAGAATTCTGTTTTGGATATAAGCAATGATCAATTTAGTTAGTATTTTTCATACACAGCCTTTTTATATTCTATTCATGTAATATAAAATTGCAAATAAATGTTGCAGACCTAATGACTATAATGGTCTCAATTTTGCCAGCAAATCCTCATTAAGGTTTTGCATCAGATGGTTATTCTGTGTTACAACTTCAATGACAGAAATTTGCAAGCTGAAACATGAACAGTCAAATGCAACGTTAGTAAATTCATGGTACATTTACTTGATATAAAAAATGTGCATAGCTTACGCATCCACATTTTCTTTAATCAAAGGATGCACCATAGACATACACCTTAGCCTCCAAGGCACGTAATACAAATGGTTTTAGGTATAGCACAGTTCATTTGCATCAAATACAGAGTCTACACAGCGATACATCTTTCATTTTCCATATAGAACAAAAGAGTAAAGTTAGCACAAAGTTCACTGAGTACCACAAACAGGGTTTGGTGTATTAGTCATATTCGATCCTGCTCTTGCTTCACTGAAGACAACAATGTGCTCTTTGTCTGTAACACCCAAATTAGCAATGCCAATCCTTAGCTTCTGCTATCTACCATTACTGCAAATGCCATAGAAAGAACCAAAGACCATCACGATCTCTAACAACTGTACCACCTCCTGCAACCATCCACATTTGTTAACTTAAATATATTGCTGGTCATCGATACACCTTAATAAGTAGAGGTATGTGGTGACGTACATACACTCCACCAGCAGATCACAAAACAACAATGCTAGCTAGCTATATCTTTGTTGCCATACGCTAAGCTGTTGACAAAGTTAAACGAGACGACACTGCATATATCAAGATTTTCTGACAAAAATGCAACGTTGCAGGGCTGAATGGTAGCAAAAATGGAAGTGTGGGGAGTTTGTGTTGAAGGGATTTTCTTTTTTGCGCCATTGGAATCACATCACACTAGACCACATAATTCTATCTATCTGACAGCCTACATTACAAACAACACGAGAAGTTCTTCATGATCTTAAGCTCATTCGTAAAAATCAAGCTTATTGTATCACATAGTTAATCATACGCTTTCCAAATTTATTCTTCATCGCGTAATGTGTAGGAGTACTACAGAACAGCTGAGGATCATCAATGAAGCACATACCAAAAAGTTAGTTGCTTAGTTTGGTTTAAATCATTTCTTTCCGTTAACTTCATGAACACAATATCACTACAAATAATCCAATGAAATGGTACCTTAAATTAAACCAAAAAAACAAAGTATGACCAATTCGGAAATGCTATTGGTAATTACCATGAATTATTTGCCATATTTCTTTCTCAATCGATCCTTGACAAAGTCATTCCGAGCTTTAGTTCGAGCTTGTTGAGGAGCAATATTGATATAAGAATGATGTACACCAAAAGCAAACAGAACAGAACCACCAAAAAAACACGCCAATGTAGCAGCAAACTTTGAAGGAGATGACGGGTAGCACAAAACCATTTCGATTTTGGGGATCTTAACAACAATTTACACAAAAATCTTCAAAATCATAGAAATAACAGAAATCCAGAATTCAAAGTTTGAGCAAAAATTTCCGATTTTGTGAATTGAAAACAAAATGTATGAAGATCTGGAAGAAATGACGATTCTTCTACTGTGTTCATACACGGGTTTTTCATTGGGCTCTTTCATTAGGCCCATCAATCTGGATCATAGTGACATAATCCAACCCATAAAAGCCCGGAGAGATGGCCGGGGCGGGGCTGGTTGAAGTGAGTTTTTTAAAGTATAAATTTAAGGAATCTCATAGTGTAATACAATAATTACATTCTGTCCCGACAAATTTAGTATTTACTAATAATTCCTTAAAATTGTTGTGGCGTGATACATTAGTATGTTGTGATACATGGTAAATGATACACAGTAACTTAAAACTGTTAAGATTAAAAGGAGAAAAAAATGGAACATTTAAATTTGTTATTTAAATCAGCTTAAATTATGGTAACAATTCATTAATAAGCATTAATTCAGCACGTAATTTTTTATTTTTTTTTATACAAAGAATTGAATTTGATATTTGTATGAAAAACTTGCCAACAAATAACCAACCAATAATCTTTTGCACGGTTTTTGGTATATATCAAAAAGTCAATATTACATCTCTGTATTATGAAAAAATGTGTTGCCGTTTTGTGCCCCTGTACAACTCTGACATTGGTCAATGTGGCATAAATCTCACTTCAGTACCAAAAACAGCATACACAGAATGCTCGGAGTACCGACCAAAAGAAATCAGTTGCAGCAGGCAGCAACAATTGCATTCTTCACTTTTGCTCATTTCTGTCTCTGAGGTGGCATGAACATTATGTCCAGACCTCCTTCGTTTACACTCAAATCACCACTTATTGCTCAATGAACTGCTAAGCCCCTAAGATGGAGCTTATTGGAGAACCAAGAATCAACCCCTTTACAAGCTACAAAAACCTGTCTCATTGTATCTTAAAGAGGGTCTTCAGTTTCATGACAAGTCTCCAATCCTCAACTGAGAGGTCTTTCCGGAAATTGGATAACAATTTCAAATTTTAAAAATTCAAGATTATATCATCTAGTTTAAAGACATTTTTATGAATATCCAGTTATTAAACTTGTTGACTGATACATGATAACAATTTTTAAAAACTCGTGATACATAGAAAATAATATGATACACATCAAATTCATGTATCAATGCATCGTCTAAACACAATAACACACAGAGTCGATATGTATTAGCAAACACACTTGATGGCGCAGTTATTAAACTTATTGACTAATACATGATAACAATTTTCAAAAACTCTTGATACATAGGAAATCATATGATACACATCTAATTCATATATCAATGCATCGACTAACACACTGAGTACTTATCTATTAAACTTATTGTCTGATACATGATAACAATTTTCAAAAATTCATGATACATATGGGATTCCTTTAATAAAATTTTTACTAATTTCAACAACAATGGTTGCTGCTTCTTTTCTCTTTTTTTGGTGTATTTTGTCAACCTTTGATATAGAGGATTCGCCAAAATCTTTGTTTGAATCCTTCCGAACATTCATAGGATCATGCAAATACTTTTTTCTATTTTCTTTCCAATTTTCATCGTCCAAATCATTAATCTTTCTATTAGTAAAAAGATCCATTAATATGATGTAATAGGATAATGAACAAAAAAAAAAAAAGAAAGGA</genome_strand>
        <mrna_strand>CCCAGCCCTGTGCTCGATGTAAGTGATGTGACTGAGCCACCTCTTCCACCTGTTGCAAAGATAAACCCAAGTAATGACAATAGTTCTACAGCTAGAGCTCCCACTACTGCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTCGCAGTTCTTCTAGCAATTTTCATGGTATATTGGTGACCATTTCTGCCTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCTCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCTTGGGTCAGCTCATGTAACACGTGATTGTTTCCTTGTATTTGCGATGTATCAAATTTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATCCCTTCCCTCCCC--TTTTTTTCCATTTTGGGTCAGATTGAGTGGGTGTCTGGGGTTTATTGCCCCATTTATTTGTAAGAATTCTGTATTGGATATAAGCAATGATCAACGTAGTTAGTATTTTTCATGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAAAAAAAAAAAAAAACTCGAGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E417242" ref_strand="-" ref_description="SGN-E417242 [STM-25-G11]">
      <seq>cagccctgtgctcgatgtaagtgatgtgactgagccacctcttccacctgttgcaaagataaacccaagtaatgacaatagttctacagctagagctcccactactgctccaaatggccaatcctcagttgttgctagcattctcatgagctcagtcgcagttcttctagcaattttcatggtatattggtgaccatttctgccttggtgccaccattttgtacaatttgttttgccatcttactgatcaaacctctctctggtgattatggagtcgcacatgatggcggcggtagtcttgggtcagctcatgtaacacgtgattgtttccttgtatttgcgatgtatcaaatttttcagctcttgtttattctttacattcttcctcgtttctatttttcatcccttccctcccctttttttccattttgggtcagattgagtgggtgtctggggtttattgccccatttatttgtaagaattctgtattggatataagcaatgatcaacgtagttagtatttttcataaaaaaaaaaaaaaaaaaaaaaactcgagactagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="26254" stop="35222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26554" g_stop="27084" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27085" i_stop="27462" i_length="378">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.148" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27463" g_stop="27491" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="566" r_length="29" r_score="0.586"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E417242" ref_strand="-">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417242" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26554" e_stop="27084"/>
          <exon e_start="27463" e_stop="27491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTA-------GTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTTTTCCATTTTGGGTCAGATTGAGTGGGTGTCTGGGGTTTATTG-CCTATTTATTTGTAAGAATTCTGTTTTGGATATAAGCAATGATCAATTTAGTTAGTATTTTTCATACACAGCCTTTTTATATTCTATTCATGTAATATAAAATTGCAAATAAATGTTGCAGACCTAATGACTATAATGGTCTCAATTTTGCCAGCAAATCCTCATTAAGGTTTTGCATCAGATGGTTATTCTGTGTTACAACTTCAATGACAGAAATTTGCAAGCTGAAACATGAACAGTCAAATGCAACGTTAGTAAATTCATGGTACATTTACTTGATATAAAAAATGTGCATAGCTTACGCATCCACATTTTCTTTAATCAAAGGATGCACCATAGACATACACCTTAGCCTCCAAGGCACGTAATACAAATGGTTTTAGGTATAGCACAGTTCATTTGCATCAAATACAGAGTCTACACAGCGATACATCTTTCATTTTCCATATAGAACAAAAGAGTAAAGTTAGCACAAAGTTC</genome_strand>
        <mrna_strand>CAGCCCTGTGCTCGATGTAAGTGATGTGACTGAGCCACCTCTTCCACCTGTTGCAAAGATAAACCCAAGTAATGACAATAGTTCTACAGCTAGAGCTCCCACTACTGCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTCGCAGTTCTTCTAGCAATTTTCATGGTATATTGGTGACCATTTCTGCCTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCTCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCTTGGGTCAGCTCATGTAACACGTGATTGTTTCCTTGTATTTGCGATGTATCAAATTTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATCCCTTCCCTCCCC--TTTTTTTCCATTTTGGGTCAGATTGAGTGGGTGTCTGGGGTTTATTGCCCCATTTATTTGTAAGAATTCTGTATTGGATATAAGCAATGATCAACGTAGTTAGTATTTTTCATAAAAAAAA..........................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAACTCGAGACTAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E537826" ref_strand="+" ref_description="SGN-E537826 [TUS-56-K3]">
      <seq>tttttctttttttgaaaatactaactaaattgatcattgcttatatccaaaacagaattcttacaaataaataggcaataaaccccagacacccactcaatctgacccaaaatggaaaaaaaaaggggagggaaggaatgaaaaatagaaacgaggaagaatgtaaagaataaacaagagctgaaaattttgatacatcgcaaatacaaggaaacaatcatgtgttaaatgagctgactaccgccgccatcatgtgcgactcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="27382" stop="26524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27087" g_stop="26824" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E537826" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27087" e_stop="26824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGCTGTGTATGAAAAATACTAACTAAATTGATCATTGCTTATATCCAAAACAGAATTCTTACAAATAAATAGGCAATAAACCCCAGACACCCACTCAATCTGACCCAAAATGGAAAAAAAAAGGGGAGGGAAGGAATGAAAAATAGAAACGAGGAAGAATGTAAAGAATAAACAAGAGCTGAAAATTTTGATACATCGCAAATACAAGGAAACAATCATGTGTTAAATGAGCTGACTACCGCCGCCATCATGTGCGACTCC</genome_strand>
        <mrna_strand>TTTTTCTTTTTTTG-AAAATACTAACTAAATTGATCATTGCTTATATCCAAAACAGAATTCTTACAAATAAATAGGCAATAAACCCCAGACACCCACTCAATCTGACCCAAAATGGAAAAAAAAAGGGGAGGGAAGGAATGAAAAATAGAAACGAGGAAGAATGTAAAGAATAAACAAGAGCTGAAAATTTTGATACATCGCAAATACAAGGAAACAATCATGTGTTAAATGAGCTGACTACCGCCGCCATCATGTGCGACTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E712450" ref_strand="+" ref_description="SGN-E712450 [FB04DE10]">
      <seq>ggctaatttccggaaagacctctcagttgaggattggagacttgtcatgaaactgaagaccctctttaagatacaatgagacaggtttttgtagcttgcaaaggggttgattcttagttctccgataagctccatcttaggggcttagcagttcattgagcaataagtggtgatttgagtgtaaacgaaggtctggacataatgttcatgccacctcagagacagaagtgagcaaaagtgaagaatgcaaatgttgctgcctgctgcaactgatttcctttggtcggtactccgagcattctgtgtatgctgtttttggtactgaagtgagatttatgccacattgaccaatgtcagagttgtacaggggcacaaaacggcaacgcattttttcataatacagagatgtaatattgactttttgatataccaaaaaccgtgcaaaagattattggttggctatttgttggcaagtttttcatacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="29892" stop="28796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29594" g_stop="29089" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E712450" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29594" e_stop="29089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAATTTCCGGAAAGACCTCTCAGTTGAGGATTGGAGACTTGTCATGAAACTGAAGACCCTCTTTAAGATACAATGAGACAGGTTTTTGTAGCTTGTAAAGGGGTTGATTCTTGGTTCTCCAATAAGCTCCATCTTAGGGGCTTAGCAGTTCATTGAGCAATAAGTGGTGATTTGAGTGTAAACGAAGGAGGTCTGGACATAATGTTCATGCCACCTCAGAGACAGAAATGAGCAAAAGTGAAGAATGCAATTGTTGCTGCCTGCTGCAACTGATTTCTTTTGGTCGGTACTCCGAGCATTCTGTGTATGCTGTTTTTGGTACTGAAGTGAGATTTATGCCACATTGACCAATGTCAGAGTTGTACAGGGGCACAAAACGGCAACACATTTTTTCATAATACAGAGATGTAATATTGACTTTTTGATATATACCAAAAACCGTGCAAAAGATTATTGGTTGGTTATTTGTTGGCAAGTTTTTCATACAAATATCAAATTCAATT</genome_strand>
        <mrna_strand>GGCTAATTTCCGGAAAGACCTCTCAGTTGAGGATTGGAGACTTGTCATGAAACTGAAGACCCTCTTTAAGATACAATGAGACAGGTTTTTGTAGCTTGCAAAGGGGTTGATTCTTAGTTCTCCGATAAGCTCCATCTTAGGGGCTTAGCAGTTCATTGAGCAATAAGTGGTGATTTGAGTGTAAACG-A--AGGTCTGGACATAATGTTCATGCCACCTCAGAGACAGAAGTGAGCAAAAGTGAAGAATGCAAATGTTGCTGCCTGCTGCAACTGATTTCCTTTGGTCGGTACTCCGAGCATTCTGTGTATGCTGTTTTTGGTACTGAAGTGAGATTTATGCCACATTGACCAATGTCAGAGTTGTACAGGGGCACAAAACGGCAACGCATTTTTTCATAATACAGAGATGTAATATTGACTTTTTG--ATATACCAAAAACCGTGCAAAAGATTATTGGTTGGCTATTTGTTGGCAAGTTTTTCATACAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E284264" ref_strand="+" ref_description="SGN-E284264 [cLER-16-H1]">
      <seq>aaaacttgccacctcagagacagaaatgagcaaaagtgaagaatgcaaatgttgctgcctgctgcaactgatttcctttggtcggtactccgagcattctgtgtatgctgtttttggtactgaagtgagatttatgccacattgaccaatgtcagagttgtacaggggcacaaaacggcaacgcattttttcataatacagagatgtaatattgactttttgatataccaaaaaccgtgcaaaagattattggttggctatttgttggcaagtttttcatacaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="29685" stop="28796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29389" g_stop="29104" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="285" polyA_stop="311"/>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E284264" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29389" e_stop="29104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCATGCCACCTCAGAGACAGAAATGAGCAAAAGTGAAGAATGCAATTGTTGCTGCCTGCTGCAACTGATTTCTTTTGGTCGGTACTCCGAGCATTCTGTGTATGCTGTTTTTGGTACTGAAGTGAGATTTATGCCACATTGACCAATGTCAGAGTTGTACAGGGGCACAAAACGGCAACACATTTTTTCATAATACAGAGATGTAATATTGACTTTTTGATATATACCAAAAACCGTGCAAAAGATTATTGGTTGGTTATTTGTTGGCAAGTTTTTCATACAA</genome_strand>
        <mrna_strand>AAAACTTGCCACCTCAGAGACAGAAATGAGCAAAAGTGAAGAATGCAAATGTTGCTGCCTGCTGCAACTGATTTCCTTTGGTCGGTACTCCGAGCATTCTGTGTATGCTGTTTTTGGTACTGAAGTGAGATTTATGCCACATTGACCAATGTCAGAGTTGTACAGGGGCACAAAACGGCAACGCATTTTTTCATAATACAGAGATGTAATATTGACTTTTTG--ATATACCAAAAACCGTGCAAAAGATTATTGGTTGGCTATTTGTTGGCAAGTTTTTCATACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E225967" ref_strand="-" ref_description="SGN-E225967 [cLEL-31-M2]">
      <seq>cctctttaagatacaatgagacaggtttttgtagcttgcaaaggggttgattcttagttctccgataagctccatcttaggggcttagcagttcattgagcaataagtggtgatttgagtgtaaacgaaggtctggacataatgttcatgccacctcagagacagaaatgagcaaaagtgaagaatgcaaatgttgctgcctgctgcaactgatttcctttggtcggtactccgagcattctgtgtatgctgtttttggtactgaagtgagatttatgccacattgaccaatgtcagagttgtacaggggcacaaaacggcaacgcattttttcataatacagagatgtaatattgactttttgatataccaaaaaccgtgcaaaagattattggttaacaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="29834" stop="28833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29534" g_stop="29132" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="399" polyA_stop="418"/>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E225967" ref_strand="-">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225967" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29534" e_stop="29132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTTTAAGATACAATGAGACAGGTTTTTGTAGCTTGTAAAGGGGTTGATTCTTGGTTCTCCAATAAGCTCCATCTTAGGGGCTTAGCAGTTCATTGAGCAATAAGTGGTGATTTGAGTGTAAACGAAGGAGGTCTGGACATAATGTTCATGCCACCTCAGAGACAGAAATGAGCAAAAGTGAAGAATGCAATTGTTGCTGCCTGCTGCAACTGATTTCTTTTGGTCGGTACTCCGAGCATTCTGTGTATGCTGTTTTTGGTACTGAAGTGAGATTTATGCCACATTGACCAATGTCAGAGTTGTACAGGGGCACAAAACGGCAACACATTTTTTCATAATACAGAGATGTAATATTGACTTTTTGATATATACCAAAAACCGTGCAAAAGATTATTGGTTG</genome_strand>
        <mrna_strand>CCTCTTTAAGATACAATGAGACAGGTTTTTGTAGCTTGCAAAGGGGTTGATTCTTAGTTCTCCGATAAGCTCCATCTTAGGGGCTTAGCAGTTCATTGAGCAATAAGTGGTGATTTGAGTGTAAACG-A--AGGTCTGGACATAATGTTCATGCCACCTCAGAGACAGAAATGAGCAAAAGTGAAGAATGCAAATGTTGCTGCCTGCTGCAACTGATTTCCTTTGGTCGGTACTCCGAGCATTCTGTGTATGCTGTTTTTGGTACTGAAGTGAGATTTATGCCACATTGACCAATGTCAGAGTTGTACAGGGGCACAAAACGGCAACGCATTTTTTCATAATACAGAGATGTAATATTGACTTTTTG--ATATACCAAAAACCGTGCAAAAGATTATTGGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E226255" ref_strand="-" ref_description="SGN-E226255 [cLEL-31-M2]">
      <seq>cacctcagagccagtaatgagcaaaagtgaagaatgcaaatgttgatgcctgctgcaactgatttcctttggtcggtactccgagcattctgtgtatgctgtttttggtactgaagtgagatttatgccacattgaccaatgtcagagttgtacaggggcacaaaacggcaacgcattttttcataatacagagatgtaatattgactttttgatataccaaaaacagtgcaaaagataattggtctgcctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="29680" stop="28863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29380" g_stop="29136" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="252" polyA_stop="268"/>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E226255" ref_strand="-">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>245</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226255" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29380" e_stop="29136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTCAGAGACAGAAATGAGCAAAAGTGAAGAATGCAATTGTTGCTGCCTGCTGCAACTGATTTCTTTTGGTCGGTACTCCGAGCATTCTGTGTATGCTGTTTTTGGTACTGAAGTGAGATTTATGCCACATTGACCAATGTCAGAGTTGTACAGGGGCACAAAACGGCAACACATTTTTTCATAATACAGAGATGTAATATTGACTTTTTGATATATACCAAAAACCGTGCAAAAGATTATTG</genome_strand>
        <mrna_strand>CACCTCAGAGCCAGTAATGAGCAAAAGTGAAGAATGCAAATGTTGATGCCTGCTGCAACTGATTTCCTTTGGTCGGTACTCCGAGCATTCTGTGTATGCTGTTTTTGGTACTGAAGTGAGATTTATGCCACATTGACCAATGTCAGAGTTGTACAGGGGCACAAAACGGCAACGCATTTTTTCATAATACAGAGATGTAATATTGACTTTTTG--ATATACCAAAAACAGTGCAAAAGATAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E404516" ref_strand="+" ref_description="SGN-E404516 [PPC-14-E10]">
      <seq>aggactggagtatcatcccattgatttggaggggtcttatgcagatccaccagtcgtaattgacaagctcagcagtattttgaggagtcttggttgctaactctactcaacagtttgaacagtttgacttttctctaaaagactggaacttggagcctgaaaatcgtgtaaaatgtttcatctgcagttctatagttttgctgcaatcttgatcctcaatctggtgttcacaagcttcacagtttctggcagttactaatttattagccctctcagttatggactctcagaacgatcgttatggtgagctcattgaagatattcttgatggtgcaagattacaagtcactcgcgacacacacatttgtaaatcacattaagttggtacaacttccttacaattcgttgtcaattgttttctgcaatttattatcttcttgttctgggaagacacagattaacaaacatgttgaagtagcagattaacaagtacctcagtgtagtgttcagtgaagatatggttgtaaccaaacaaaagaaatgagaaatttaacagagattttcgcgtatttttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="36465" stop="35279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36165" g_stop="35588" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E404516" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36165" e_stop="35588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTGGAGTACCATCCCATTGATTTGGAGGGATCTTATGCGGATCCACCAGTCGTAATTGACAAGCTCAACAGTATTTTGAGGAGTCTTGGCTGCTAAATCTACTCAACAGTTTGAACAGTTCAACTTTTCTCTACAAGACTGGAATTTGGAGCCTGAAAATCTTGTAAAATATGTTTCATCTGCAGTTCTATAGTTTTGCTGCATTCTTGATCCTCAATCCGGTGTTCACAAGCTTCACAGGTTCTGGCAGTTACTAATTTATTAGCCCCTCTCAGTTATGAACTCTCAGAACGATCGTTATGGTGAGCTCATTCAAGATATTCTTTATGGTGCAATATTACAAGTCACTCGCGATACACACATTTGTAAATCACATTATAGGTGTGTACAACTTCATTACAATTCGTTGTCAATTGTTTTCTGCAATTTATTATCTTCTTGTTCTGGGAAGACACAGATTAACAAGCATGTTGAAGTAGCAGATTAACAAGAACCTCAGTGTACTGTTCAGTGATGTATGATTGTAACTTGTAACAAAACAAAAGAAATGAGACATTTAACAAGAAATTTTCGC</genome_strand>
        <mrna_strand>AGGACTGGAGTATCATCCCATTGATTTGGAGGGGTCTTATGCAGATCCACCAGTCGTAATTGACAAGCTCAGCAGTATTTTGAGGAGTCTTGGTTGCTAACTCTACTCAACAGTTTGAACAGTTTGACTTTTCTCTAAAAGACTGGAACTTGGAGCCTGAAAATCGTGT-AAA-ATGTTTCATCTGCAGTTCTATAGTTTTGCTGCAATCTTGATCCTCAATCTGGTGTTCACAAGCTTCACAGTTTCTGGCAGTTACTAATTTATTAG-CCCTCTCAGTTATGGACTCTCAGAACGATCGTTATGGTGAGCTCATTGAAGATATTCTTGATGGTGCAAGATTACAAGTCACTCGCGACACACACATTTGTAAATCACATTA-AGTTG-GTACAACTTCCTTACAATTCGTTGTCAATTGTTTTCTGCAATTTATTATCTTCTTGTTCTGGGAAGACACAGATTAACAAACATGTTGAAGTAGCAGATTAACAAGTACCTCAGTGTAGTGTTCAGTGAAG-AT-A-TG---GTTGTAACCAAACAAAAGAAATGAGAAATTTAAC-AGAGATTTTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E745719" ref_strand="+" ref_description="SGN-E745719 [GI|47105151]">
      <seq>ggagagagaggggaagaagaagatgaacaagaagaagctgaaaattcttctttctctctttgctctcaacacaattactctttatctctacttctcttcacacccagatcatttccgccacaatttccctaaaaaccactatattactaccggaaaccgcttttcttcatcggaaaaccatccaaatttgcactcctccgttgcttcccaatccaaaccatggcctattttgccgtcttacctcccttggtctcagaaccccaacgttggttggagatcgtgtgagggttattttggaaatgggtttactcgtaaaatcgatcttctcaaagcctcgccggagattcaccggaaattcggtgaaaacagatatttcggtgaaggaggagtaggagggtggtttaggtgttttttcagtgagacattgcagagttcgatttgtgaaggaggggtaataagaatgaatccggagaaaattttgatgtctaaaggaggagagaaattggaagaagtaataggaaggggagaagaagaagagttacccatttttgaaaatggagcttttgagatagaggttaatgaaagaacaaaaattgggaaaaaattagctgatgaaaatttcttgaataaatatttacctgaaggtgcagtctcaaagcacactatgagggaattaatcgactcgattcgattagttgacgccaatgattttcattgttctgagtggattgaggagccatcacttttgattacccgatttgagtatgcaaatctttttcatacaattactgattggtatagtgcatacgcggcatccagagttactggcttacccagtcggccacatttggtttttgtagatggccattgtgagacacaattggaggaaacatggagagcactgttttcaagcctcacttatgctaaaaactttagcggtccggtttgttttcgccatgctatcctctcgccgttgggatatgaaactgccctgtttaaggggctttcagaaagtatcggttgtactggagctcctgcccatgatttgtggcaaaatcccagtgatagtaaaactgcacggttgtccgagtttggagagatgatcagagcagcctttggatttcctgtggatagacagaacatcccaaggacagtcactggccacaatgtcctctttgttagacgcgaggattatttagctcacccacgtcatggcggaaaggtacagtctaggcttagcaatgaacaagaagtatttgattccataaagagctggtccttgaaccacacagagtgcaaagtaaatgtgattaacggattatttgcccacatgtccatgaaagatcaagttcgagcaatccaagatgcttctgtcattgtaggtgctcatggagcaggtctaacacacattgtttctgcatcaccaaaagctgttatactagaaatcataagcagtgaatataggcgcccccatttttctctgattgcttattggaaaggattggagtaccatcccattgatttggagggatcttatgcggatccaccagtcgtaattgacaagctcaacagtattttgaggagtcttggctgctaaatctactcaacagtttgaacagttcaacttttctctacaagactggaatttggagcctgaaaatcttgtaaaatatgtttcatctgcagttctatagttttgctgcattcttgatcctcaatccggtgttcacaagcttcacaggttctggcagttactaatttattagcccctctcagttatgaactctcagaacgatcgttatggtgagctcattcaagatattctttatggtgcaatattacaagtcactcgcgatacacacatttgtaaatcacattataggtgtgtacaacttcattacaattcgttgtcaattgttttctgcaatttattatcttcttgttctgggaagacacagattaacaagcatgttgaagtagcagattaacaagaacctcagtgtactgttcagtgatgtatgattgtaacttgtaacaaaacaaaagaaatgagacatttaacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="39602" stop="35295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39303" g_stop="38580" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="724" r_length="724" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38579" i_stop="37475" i_length="1105">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37474" g_stop="37325" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="725" r_stop="874" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37324" i_stop="36789" i_length="536">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36788" g_stop="35596" g_length="1193"/>
          <reference_exon_boundary r_type="cDNA" r_start="875" r_stop="2067" r_length="1193" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2068" polyA_stop="2078"/>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E745719" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2067</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39303" e_stop="38580"/>
          <exon e_start="37474" e_stop="37325"/>
          <exon e_start="36788" e_stop="35596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAGAGAGGGGAAGAAGAAGATGAACAAGAAGAAGCTGAAAATTCTTCTTTCTCTCTTTGCTCTCAACACAATTACTCTTTATCTCTACTTCTCTTCACACCCAGATCATTTCCGCCACAATTTCCCTAAAAACCACTATATTACTACCGGAAACCGCTTTTCTTCATCGGAAAACCATCCAAATTTGCACTCCTCCGTTGCTTCCCAATCCAAACCATGGCCTATTTTGCCGTCTTACCTCCCTTGGTCTCAGAACCCCAACGTTGGTTGGAGATCGTGTGAGGGTTATTTTGGAAATGGGTTTACTCGTAAAATCGATCTTCTCAAAGCCTCGCCGGAGATTCACCGGAAATTCGGTGAAAACAGATATTTCGGTGAAGGAGGAGTAGGAGGGTGGTTTAGGTGTTTTTTCAGTGAGACATTGCAGAGTTCGATTTGTGAAGGAGGGGTAATAAGAATGAATCCGGAGAAAATTTTGATGTCTAAAGGAGGAGAGAAATTGGAAGAAGTAATAGGAAGGGGAGAAGAAGAAGAGTTACCCATTTTTGAAAATGGAGCTTTTGAGATAGAGGTTAATGAAAGAACAAAAATTGGGAAAAAATTAGCTGATGAAAATTTCTTGAATAAATATTTACCTGAAGGTGCAGTCTCAAAGCACACTATGAGGGAATTAATCGACTCGATTCGATTAGTTGACGCCAATGATTTTCATTGTTCTGAGGTTTGATTTTTTGGAACTTTGTTTGATCTGATATTAAAGTTTTGATCTTTGGGAATGTTTGTTGATATGGAATACAGTAATGGATTTTGTTTGATCTATTTAATGAAGATTAATTTATCTAATTGTTGCTTTAGAATAGTAGCTCAGTGTTATAAATGTTGTTTTATATGTGTCATTTAAGATAATTCCTTGAAATCTGGAGTAGAGGGTGGATAACATTAGTTAATTAACTTTTGGATTGTGGTTGCATTTCATTTGATTGTGTTATAGATAAAGTGGTGATTTTGGAATCTGTTACTAAATATTTTGTTAAGATTTTAGAGTTTATCCAGAGCTTTCATTGTAGTTCTGTATCTGAATCCATAAAGTTATCGAATTTATGGACCTCGAAGAGTATTTATTGTTGGTAGTTAACGACCTTAAGTTGGCAAATGGTCAGTGTATGTGATCTATGGTGAATCCTACGACTTTTGATCTCCTTTCATCTCTTTATTTCCATTTTACAAATGGAATATGGTAGCATTTGTCTGAGCTGGTCAGCTTTGTCCTGAAAACCTTAATAACCAATTCGATTAAATGCCTTTTGAAACTTACTTGGACAACTGGTTGTTGCATTTTGAGGACTATCGACTTGATCTGACAGTATGCCAAACATGGCTTCTATGTTAGGAGTAACTTATGTCTAGGAGGAAATCCGTGCTAGATAGGGACCTTTCACTTGGTTACTAGCTACTCAAAGTTCCAGTATGACCAGTTAATTTTAGATCTTTGCTGTGGTATCATTCAAAGTCCAAAGTTTTGTTGTGCACTAACAAGAGGAATACATGAAGGATGTAGCACTGTTAGGTTACATTACCTTATCCACTAATGAAAGAGAATCAACTAAAATGATGATAAGTGGTGTTCTATTGCTATTTTAGATTGCTGATTATTGGAATATTTATGAGATGAACATCTTTTCAGTTCTTCATGTGCTAATCAAAAAATTATCCATGCTAGATGTCAGTGTTCAAGCAACCATGTAAGGAAGCTGTGTCTTTTGTTAATGCCATCTTTCCGTAATCGATGCCTTACATTGCTGTTATTTTTCCAATTTTTGTTTCAGTGGATTGAGGAGCCATCACTTTTGATTACCCGATTTGAGTATGCAAATCTTTTTCATACAATTACTGATTGGTATAGTGCATACGCGGCATCCAGAGTTACTGGCTTACCCAGTCGGCCACATTTGGTTTTTGTAGATGGCCATTGTGAGGTACGTTTGAAATTATTGTTGATTATGGTGTGCTGCATTGTTCTGTGTCATGGATGAATGTAGACTCAGTAATTTTTCTCTAGCAATCCAATGGACTTGAGATTCTTGTGTCAAGTTGGTTTGACTTAATCCCGAGTTTCCCTTTGTTTCTGTTTCTATTTGACACAGCGATTTACTCAGCAGTACCTAGTTGTTGCAATTGGCTCATTCTTACTTCTATTTACATGTCACTATTTATTTGAATGGTCCTTTGATGGTAAAAAGAAGTTCTATTACTAAAAAAAAATTAGCAATGATTTCATTTCTGGACAATTTATTGTTACCTTACATCCCCGTCTTGAAAATTCCTTCCTGTGCATACTTTTATGGGACTGACGTTCATAGCCTACGCTTTCATGTGTTTAAAGCTCTTTCACCCCATTACTATAATCTTGATGATTACTTGGCCAAGATTTTTTTTGGCATGTTTCATTTATCTTCAAATTCAGTTTCTTCATGTTAACTGCTTTTACTCCTGTTTGGAAAAAAAAATCCAGACACAATTGGAGGAAACATGGAGAGCACTGTTTTCAAGCCTCACTTATGCTAAAAACTTTAGCGGTCCGGTTTGTTTTCGCCATGCTATCCTCTCGCCGTTGGGATATGAAACTGCCCTGTTTAAGGGGCTTTCAGAAAGTATCGGTTGTACTGGAGCTCCTGCCCATGATTTGTGGCAAAATCCCAGTGATAGTAAAACTGCACGGTTGTCCGAGTTTGGAGAGATGATCAGAGCAGCCTTTGGATTTCCTGTGGATAGACAGAACATCCCAAGGACAGTCACTGGCCACAATGTCCTCTTTGTTAGACGCGAGGATTATTTAGCTCACCCACGTCATGGCGGAAAGGTACAGTCTAGGCTTAGCAATGAACAAGAAGTATTTGATTCCATAAAGAGCTGGTCCTTGAACCACACAGAGTGCAAAGTAAATGTGATTAACGGATTATTTGCCCACATGTCCATGAAAGATCAAGTTCGAGCAATCCAAGATGCTTCTGTCATTGTAGGTGCTCATGGAGCAGGTCTAACGCACATTGTTTCTGCATCACCAAAAGCTGTTATACTAGAAATCATAAGCAGTGAATATAGGCGCCCCCATTTTTCTCTGATTGCTTATTGGAAAGGATTGGAGTACCATCCCATTGATTTGGAGGGATCTTATGCGGATCCACCAGTCGTAATTGACAAGCTCAACAGTATTTTGAGGAGTCTTGGCTGCTAAATCTACTCAACAGTTTGAACAGTTCAACTTTTCTCTACAAGACTGGAATTTGGAGCCTGAAAATCTTGTAAAATATGTTTCATCTGCAGTTCTATAGTTTTGCTGCATTCTTGATCCTCAATCCGGTGTTCACAAGCTTCACAGGTTCTGGCAGTTACTAATTTATTAGCCCCTCTCAGTTATGAACTCTCAGAACGATCGTTATGGTGAGCTCATTCAAGATATTCTTTATGGTGCAATATTACAAGTCACTCGCGATACACACATTTGTAAATCACATTATAGGTGTGTACAACTTCATTACAATTCGTTGTCAATTGTTTTCTGCAATTTATTATCTTCTTGTTCTGGGAAGACACAGATTAACAAGCATGTTGAAGTAGCAGATTAACAAGAACCTCAGTGTACTGTTCAGTGATGTATGATTGTAACTTGTAACAAAACAAAAGAAATGAGACATTTAACAAGAA</genome_strand>
        <mrna_strand>GGAGAGAGAGGGGAAGAAGAAGATGAACAAGAAGAAGCTGAAAATTCTTCTTTCTCTCTTTGCTCTCAACACAATTACTCTTTATCTCTACTTCTCTTCACACCCAGATCATTTCCGCCACAATTTCCCTAAAAACCACTATATTACTACCGGAAACCGCTTTTCTTCATCGGAAAACCATCCAAATTTGCACTCCTCCGTTGCTTCCCAATCCAAACCATGGCCTATTTTGCCGTCTTACCTCCCTTGGTCTCAGAACCCCAACGTTGGTTGGAGATCGTGTGAGGGTTATTTTGGAAATGGGTTTACTCGTAAAATCGATCTTCTCAAAGCCTCGCCGGAGATTCACCGGAAATTCGGTGAAAACAGATATTTCGGTGAAGGAGGAGTAGGAGGGTGGTTTAGGTGTTTTTTCAGTGAGACATTGCAGAGTTCGATTTGTGAAGGAGGGGTAATAAGAATGAATCCGGAGAAAATTTTGATGTCTAAAGGAGGAGAGAAATTGGAAGAAGTAATAGGAAGGGGAGAAGAAGAAGAGTTACCCATTTTTGAAAATGGAGCTTTTGAGATAGAGGTTAATGAAAGAACAAAAATTGGGAAAAAATTAGCTGATGAAAATTTCTTGAATAAATATTTACCTGAAGGTGCAGTCTCAAAGCACACTATGAGGGAATTAATCGACTCGATTCGATTAGTTGACGCCAATGATTTTCATTGTTCTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATTGAGGAGCCATCACTTTTGATTACCCGATTTGAGTATGCAAATCTTTTTCATACAATTACTGATTGGTATAGTGCATACGCGGCATCCAGAGTTACTGGCTTACCCAGTCGGCCACATTTGGTTTTTGTAGATGGCCATTGTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAATTGGAGGAAACATGGAGAGCACTGTTTTCAAGCCTCACTTATGCTAAAAACTTTAGCGGTCCGGTTTGTTTTCGCCATGCTATCCTCTCGCCGTTGGGATATGAAACTGCCCTGTTTAAGGGGCTTTCAGAAAGTATCGGTTGTACTGGAGCTCCTGCCCATGATTTGTGGCAAAATCCCAGTGATAGTAAAACTGCACGGTTGTCCGAGTTTGGAGAGATGATCAGAGCAGCCTTTGGATTTCCTGTGGATAGACAGAACATCCCAAGGACAGTCACTGGCCACAATGTCCTCTTTGTTAGACGCGAGGATTATTTAGCTCACCCACGTCATGGCGGAAAGGTACAGTCTAGGCTTAGCAATGAACAAGAAGTATTTGATTCCATAAAGAGCTGGTCCTTGAACCACACAGAGTGCAAAGTAAATGTGATTAACGGATTATTTGCCCACATGTCCATGAAAGATCAAGTTCGAGCAATCCAAGATGCTTCTGTCATTGTAGGTGCTCATGGAGCAGGTCTAACACACATTGTTTCTGCATCACCAAAAGCTGTTATACTAGAAATCATAAGCAGTGAATATAGGCGCCCCCATTTTTCTCTGATTGCTTATTGGAAAGGATTGGAGTACCATCCCATTGATTTGGAGGGATCTTATGCGGATCCACCAGTCGTAATTGACAAGCTCAACAGTATTTTGAGGAGTCTTGGCTGCTAAATCTACTCAACAGTTTGAACAGTTCAACTTTTCTCTACAAGACTGGAATTTGGAGCCTGAAAATCTTGTAAAATATGTTTCATCTGCAGTTCTATAGTTTTGCTGCATTCTTGATCCTCAATCCGGTGTTCACAAGCTTCACAGGTTCTGGCAGTTACTAATTTATTAGCCCCTCTCAGTTATGAACTCTCAGAACGATCGTTATGGTGAGCTCATTCAAGATATTCTTTATGGTGCAATATTACAAGTCACTCGCGATACACACATTTGTAAATCACATTATAGGTGTGTACAACTTCATTACAATTCGTTGTCAATTGTTTTCTGCAATTTATTATCTTCTTGTTCTGGGAAGACACAGATTAACAAGCATGTTGAAGTAGCAGATTAACAAGAACCTCAGTGTACTGTTCAGTGATGTATGATTGTAACTTGTAACAAAACAAAAGAAATGAGACATTTAACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E348963" ref_strand="+" ref_description="SGN-E348963 [cTOF-29-O2]">
      <seq>tcactggccacaatgtcctctttgttagacgcgaggattatttagctcacccacgtcatggcggaaaggtacagtctaggcttagcaatgaacaagaagtatttgattccataaagagctggtccttgaaccacacagagtgcaaagtaaatgtgattaacggattatttgcccacatgtccatgaaagatcaagttcgagcaatccaagatgcttctgtcattgtaggtgctcatggagcaggtctaacgcacattgtttctgcatcaccaaaagctgttatactagaaatcataagcagtgaatataggcgcccccatttttctctgattgcttattggaaaggattggagtaccatcccattgatttggagggatcttatgcggatccaccagtcgtaattgacaagctcaacagtattttgaggagtcttggctgctaaatctactcaacagtttgaacagttcaacttttctctacaagactggaatttggagcctgaaaatcttgtaaaatatgtttcatctgcagttctatagttntgctgcattcttgatcctcaatccggtgttcacaagcttcacaggttctggcagttactaatttattagcccctctcagttatgaactctcagaacgatcgttatggtgagctcattcaagatattctttatggtgcaatattacaagtcactcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="36808" stop="35509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36508" g_stop="35809" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="700" r_length="700" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E348963" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36508" e_stop="35809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTGGCCACAATGTCCTCTTTGTTAGACGCGAGGATTATTTAGCTCACCCACGTCATGGCGGAAAGGTACAGTCTAGGCTTAGCAATGAACAAGAAGTATTTGATTCCATAAAGAGCTGGTCCTTGAACCACACAGAGTGCAAAGTAAATGTGATTAACGGATTATTTGCCCACATGTCCATGAAAGATCAAGTTCGAGCAATCCAAGATGCTTCTGTCATTGTAGGTGCTCATGGAGCAGGTCTAACGCACATTGTTTCTGCATCACCAAAAGCTGTTATACTAGAAATCATAAGCAGTGAATATAGGCGCCCCCATTTTTCTCTGATTGCTTATTGGAAAGGATTGGAGTACCATCCCATTGATTTGGAGGGATCTTATGCGGATCCACCAGTCGTAATTGACAAGCTCAACAGTATTTTGAGGAGTCTTGGCTGCTAAATCTACTCAACAGTTTGAACAGTTCAACTTTTCTCTACAAGACTGGAATTTGGAGCCTGAAAATCTTGTAAAATATGTTTCATCTGCAGTTCTATAGTTTTGCTGCATTCTTGATCCTCAATCCGGTGTTCACAAGCTTCACAGGTTCTGGCAGTTACTAATTTATTAGCCCCTCTCAGTTATGAACTCTCAGAACGATCGTTATGGTGAGCTCATTCAAGATATTCTTTATGGTGCAATATTACAAGTCACTCGCG</genome_strand>
        <mrna_strand>TCACTGGCCACAATGTCCTCTTTGTTAGACGCGAGGATTATTTAGCTCACCCACGTCATGGCGGAAAGGTACAGTCTAGGCTTAGCAATGAACAAGAAGTATTTGATTCCATAAAGAGCTGGTCCTTGAACCACACAGAGTGCAAAGTAAATGTGATTAACGGATTATTTGCCCACATGTCCATGAAAGATCAAGTTCGAGCAATCCAAGATGCTTCTGTCATTGTAGGTGCTCATGGAGCAGGTCTAACGCACATTGTTTCTGCATCACCAAAAGCTGTTATACTAGAAATCATAAGCAGTGAATATAGGCGCCCCCATTTTTCTCTGATTGCTTATTGGAAAGGATTGGAGTACCATCCCATTGATTTGGAGGGATCTTATGCGGATCCACCAGTCGTAATTGACAAGCTCAACAGTATTTTGAGGAGTCTTGGCTGCTAAATCTACTCAACAGTTTGAACAGTTCAACTTTTCTCTACAAGACTGGAATTTGGAGCCTGAAAATCTTGTAAAATATGTTTCATCTGCAGTTCTATAGTTNTGCTGCATTCTTGATCCTCAATCCGGTGTTCACAAGCTTCACAGGTTCTGGCAGTTACTAATTTATTAGCCCCTCTCAGTTATGAACTCTCAGAACGATCGTTATGGTGAGCTCATTCAAGATATTCTTTATGGTGCAATATTACAAGTCACTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E453906" ref_strand="+" ref_description="SGN-E453906 [cSTS-21-F5]">
      <seq>ctgaaaattcttctttctctctttgccctcaacttcaatcacctctttctctctccttctcttcacacccagatcacttccgccacaatttccccaaaaccaccatattacctccggaaaccgcttttcttcgtcggaaaaccacccaaatttgcacctcctccgtcgtttcccaatccaaaccatggccccatattgccgtcttacctcccttggtctcagaaccccagcgttggttggagaatcctgtgagggttattttggaaatgggtttactcgtaaaatcgatcttctcaaaacctcgccggagattcaccggaaatttggtgaaaacagagattccggaggaggaggaggatggtttaggtgttttttcagtgagacattgcagagttcgatttgtgaaggaggggtaataaggatggatccggagaaaattttgatgtctaaaggaggagagaagttggaaaaagtaataggaaggggagaagaagaagagttacccatttttgaaaatggagcttttgagatagaggttaatgaaagaacaaaaattgggaaaaaattagctgatgaaaatttcttgaataaantatttacctgaangtgcaatctcaaagcacacttatgagggaattaatcgactcgattcgnattggttggcgccaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="39566" stop="38295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39266" g_stop="38595" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="673" r_length="673" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E453906" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39266" e_stop="38595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAAATTCTTCTTTCTCTCTTTGCTCTCAAC-ACAATTA-CTCTTTATCTCTACTTCTCTTCACACCCAGATCATTTCCGCCACAATTTCCCTAAAAACCACTATATTACTACCGGAAACCGCTTTTCTTCATCGGAAAACCATCCAAATTTGCA-CTCCTCCGTTGCTTCCCAATCCAAACCATGG-CCTATTTTGCCGTCTTACCTCCCTTGGTCTCAGAACCCCAACGTTGGTTGGAG-ATCGTGTGAGGGTTATTTTGGAAATGGGTTTACTCGTAAAATCGATCTTCTCAAAGCCTCGCCGGAGATTCACCGGAAATTCGGTGAAAACAGATATTTCGGTGAAGGAGGAGTAGGAGGGTGGTTTAGGTGTTTTTTCAGTGAGACATTGCAGAGTTCGATTTGTGAAGGAGGGGTAATAAGAATGAATCCGGAGAAAATTTTGATGTCTAAAGGAGGAGAGAAATTGGAAGAAGTAATAGGAAGGGGAGAAGAAGAAGAGTTACCCATTTTTGAAAATGGAGCTTTTGAGATAGAGGTTAATGAAAGAACAAAAATTGGGAAAAAATTAGCTGATGAAAATTTCTTGAATAAA-TATTTACCTGAAGGTGCAGTCTCAAAGCACAC-TATGAGGGAATTAATCGACTCGATTCG-ATTAGTTGACGCCAATGAT</genome_strand>
        <mrna_strand>CTGAAAATTCTTCTTTCTCTCTTTGCCCTCAACTTCAATCACCTCTTTCTCTCTCCTTCTCTTCACACCCAGATCACTTCCGCCACAATTTCCC-CAAAACCACCATATTACCTCCGGAAACCGCTTTTCTTCGTCGGAAAACCACCCAAATTTGCACCTCCTCCGTCGTTTCCCAATCCAAACCATGGCCCCATATTGCCGTCTTACCTCCCTTGGTCTCAGAACCCCAGCGTTGGTTGGAGAATCCTGTGAGGGTTATTTTGGAAATGGGTTTACTCGTAAAATCGATCTTCTCAAAACCTCGCCGGAGATTCACCGGAAATTTGGTGAAAACAGAGA-TTCCG-G-AGGA-G-G-AGGAGGATGGTTTAGGTGTTTTTTCAGTGAGACATTGCAGAGTTCGATTTGTGAAGGAGGGGTAATAAGGATGGATCCGGAGAAAATTTTGATGTCTAAAGGAGGAGAGAAGTTGGAAAAAGTAATAGGAAGGGGAGAAGAAGAAGAGTTACCCATTTTTGAAAATGGAGCTTTTGAGATAGAGGTTAATGAAAGAACAAAAATTGGGAAAAAATTAGCTGATGAAAATTTCTTGAATAAANTATTTACCTGAANGTGCAATCTCAAAGCACACTTATGAGGGAATTAATCGACTCGATTCGNATTGGTTGGCGCCAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E413436" ref_strand="+" ref_description="SGN-E413436 [STM-17-L10]">
      <seq>acttctcttcacacccagatcatttccgccacaatttccccaaaaaccactatattactaccggaaaccgcttttcttcatcggaaaaccacccaaatttgcactcctccgtcgtttcccaatccaaaccatggcccatattgccgtcttacctcccttggtcacagaaccccaacgttggttggagatcctgtgagggttattttggaaatgggtttactcgtaaaatcgatcttctcaaaacctcgccggagattcaccggaaatttggtgaaaacagagattccggaggaggaggaggatggtttaggtgttttttcagtgagacattgcagagttcgatttgtgaaggaggggtaataaggatgaatccggagaaaattttgatgtctaaaggaggagagaaattggaaaaagtaataggaaggggagaagaagaagagttacccatttttgaaaatggagcttttgagatagaggttaatgaaaggacanaatttgggaaaaaattagctgatgaaaatttcttgaataaatatttacctgaaggtgcaatctcaaagcacactatgaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="39514" stop="38332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39214" g_stop="38632" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E413436" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39214" e_stop="38632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCTCTTCACACCCAGATCATTTCCGCCACAATTTCCCTAAAAACCACTATATTACTACCGGAAACCGCTTTTCTTCATCGGAAAACCATCCAAATTTGCACTCCTCCGTTGCTTCCCAATCCAAACCATGGCCTATTTTGCCGTCTTACCTCCCTTGGTCTCAGAACCCCAACGTTGGTTGGAGATCGTGTGAGGGTTATTTTGGAAATGGGTTTACTCGTAAAATCGATCTTCTCAAAGCCTCGCCGGAGATTCACCGGAAATTCGGTGAAAACAGATATTTCGGTGAAGGAGGAGTAGGAGGGTGGTTTAGGTGTTTTTTCAGTGAGACATTGCAGAGTTCGATTTGTGAAGGAGGGGTAATAAGAATGAATCCGGAGAAAATTTTGATGTCTAAAGGAGGAGAGAAATTGGAAGAAGTAATAGGAAGGGGAGAAGAAGAAGAGTTACCCATTTTTGAAAATGGAGCTTTTGAGATAGAGGTTAATGAAAGAACAAAAATTGGGAAAAAATTAGCTGATGAAAATTTCTTGAATAAATATTTACCTGAAGGTGCAGTCTCAAAGCACACTATGAGGGA</genome_strand>
        <mrna_strand>ACTTCTCTTCACACCCAGATCATTTCCGCCACAATTTCCCCAAAAACCACTATATTACTACCGGAAACCGCTTTTCTTCATCGGAAAACCACCCAAATTTGCACTCCTCCGTCGTTTCCCAATCCAAACCATGGCCCATATTGCCGTCTTACCTCCCTTGGTCACAGAACCCCAACGTTGGTTGGAGATCCTGTGAGGGTTATTTTGGAAATGGGTTTACTCGTAAAATCGATCTTCTCAAAACCTCGCCGGAGATTCACCGGAAATTTGGTGAAAACAGAGA-TTCCG-G-AGGA-G-G-AGGAGGATGGTTTAGGTGTTTTTTCAGTGAGACATTGCAGAGTTCGATTTGTGAAGGAGGGGTAATAAGGATGAATCCGGAGAAAATTTTGATGTCTAAAGGAGGAGAGAAATTGGAAAAAGTAATAGGAAGGGGAGAAGAAGAAGAGTTACCCATTTTTGAAAATGGAGCTTTTGAGATAGAGGTTAATGAAAGGACANAATTTGGGAAAAAATTAGCTGATGAAAATTTCTTGAATAAATATTTACCTGAAGGTGCAATCTCAAAGCACACTATGAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E406822" ref_strand="+" ref_description="SGN-E406822 [PPI-5-G21]">
      <seq>tttccgccaccaatttccccaaaaaccacctatattactaccggaaaccgcttttcttcgtcggaaaaccacccaaatttgcactcctccgtcgtttcccaatccaaaccatggcccatattgccgtcttacctcccttggtctcagaaccccagcgttggttggagatcctgtgagggttattttggaaatgggtttactcgtaaaatcgatcttctcaaaacctcgccggagattcaccggaaatttggtgaaaacagagattccggaggaggaggaggatggtttanngtgttttttcagtgagacattgcagagttcgatttgtgaaggaggggtaataaggatggatccggagaaaattttgatgtctaaaggaggagagaagttggaaaaagtaataggaaggggagaagaagaagagttacccatttttgaaaatggagcttttgagatagaggttaatgaaagaacaaaaattgggaaaaaattagctgatgaaaatttcttgaataaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="39492" stop="38372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39192" g_stop="38672" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E406822" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E406822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39192" e_stop="38672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCGCCA-CAATTTCCCTAAAAACCAC-TATATTACTACCGGAAACCGCTTTTCTTCATCGGAAAACCATCCAAATTTGCACTCCTCCGTTGCTTCCCAATCCAAACCATGGCCTATTTTGCCGTCTTACCTCCCTTGGTCTCAGAACCCCAACGTTGGTTGGAGATCGTGTGAGGGTTATTTTGGAAATGGGTTTACTCGTAAAATCGATCTTCTCAAAGCCTCGCCGGAGATTCACCGGAAATTCGGTGAAAACAGATATTTCGGTGAAGGAGGAGTAGGAGGGTGGTTTAGGTGTTTTTTCAGTGAGACATTGCAGAGTTCGATTTGTGAAGGAGGGGTAATAAGAATGAATCCGGAGAAAATTTTGATGTCTAAAGGAGGAGAGAAATTGGAAGAAGTAATAGGAAGGGGAGAAGAAGAAGAGTTACCCATTTTTGAAAATGGAGCTTTTGAGATAGAGGTTAATGAAAGAACAAAAATTGGGAAAAAATTAGCTGATGAAAATTTCTTGAATAAAT</genome_strand>
        <mrna_strand>TTTCCGCCACCAATTTCCCCAAAAACCACCTATATTACTACCGGAAACCGCTTTTCTTCGTCGGAAAACCACCCAAATTTGCACTCCTCCGTCGTTTCCCAATCCAAACCATGGCCCATATTGCCGTCTTACCTCCCTTGGTCTCAGAACCCCAGCGTTGGTTGGAGATCCTGTGAGGGTTATTTTGGAAATGGGTTTACTCGTAAAATCGATCTTCTCAAAACCTCGCCGGAGATTCACCGGAAATTTGGTGAAAACAGAGA-TTCCG-G-AGGAGGAGGAGGATGGT--TTANNGTGTTTTTTCAGTGAGACATTGCAGAGTTCGATTTGTGAAGGAGGGGTAATAAGGATGGATCCGGAGAAAATTTTGATGTCTAAAGGAGGAGAGAAGTTGGAAAAAGTAATAGGAAGGGGAGAAGAAGAAGAGTTACCCATTTTTGAAAATGGAGCTTTTGAGATAGAGGTTAATGAAAGAACAAAAATTGGGAAAAAATTAGCTGATGAAAATTTCTTGAATAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E472209" ref_strand="+" ref_description="SGN-E472209 [cSTB-27-N16]">
      <seq>acttctcttcacacccagatcatttccgccacaatttccccaaaaaccactatattactaccggaaaccgcttttcttcatcggaaaaccacccaaatttgcactcctccgtcgtttcccaatccaaaccatggcccatattgccgtcttacctcccttggtcacagaaccccaacgttggttggagatcctgtgagggttattttggaaatgggtttactcgtaaaatcgatcttctcaaaacctcgccggagattcaccggaaatttggtgaaaacagagattccggaggaggaggaggatggtttaggtgttttttcagtgagacattgcagagttcgatttgtgaaggaggggtaataaggatgaatccggagaaaattttgatgtctaaaggaggagagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="39514" stop="38500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39214" g_stop="38800" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E472209" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39214" e_stop="38800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCTCTTCACACCCAGATCATTTCCGCCACAATTTCCCTAAAAACCACTATATTACTACCGGAAACCGCTTTTCTTCATCGGAAAACCATCCAAATTTGCACTCCTCCGTTGCTTCCCAATCCAAACCATGGCCTATTTTGCCGTCTTACCTCCCTTGGTCTCAGAACCCCAACGTTGGTTGGAGATCGTGTGAGGGTTATTTTGGAAATGGGTTTACTCGTAAAATCGATCTTCTCAAAGCCTCGCCGGAGATTCACCGGAAATTCGGTGAAAACAGATATTTCGGTGAAGGAGGAGTAGGAGGGTGGTTTAGGTGTTTTTTCAGTGAGACATTGCAGAGTTCGATTTGTGAAGGAGGGGTAATAAGAATGAATCCGGAGAAAATTTTGATGTCTAAAGGAGGAGAGAAATT</genome_strand>
        <mrna_strand>ACTTCTCTTCACACCCAGATCATTTCCGCCACAATTTCCCCAAAAACCACTATATTACTACCGGAAACCGCTTTTCTTCATCGGAAAACCACCCAAATTTGCACTCCTCCGTCGTTTCCCAATCCAAACCATGGCCCATATTGCCGTCTTACCTCCCTTGGTCACAGAACCCCAACGTTGGTTGGAGATCCTGTGAGGGTTATTTTGGAAATGGGTTTACTCGTAAAATCGATCTTCTCAAAACCTCGCCGGAGATTCACCGGAAATTTGGTGAAAACAGAGA-TTCCG-G-AGGA-G-G-AGGAGGATGGTTTAGGTGTTTTTTCAGTGAGACATTGCAGAGTTCGATTTGTGAAGGAGGGGTAATAAGGATGAATCCGGAGAAAATTTTGATGTCTAAAGGAGGAGAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="43774" stop="42729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43474" g_stop="43028" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43474" e_stop="43028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTATAAGTTTATAGCAAAAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAAGTGTATAATTCGCAATTGTATAGTTCGTTGGCCTTTTTCTCTGCAATTTTTGAAGTAAAATATTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGATAGTGGCGAGCGAGATTCCTGGAAGAGAGACG-CTGACAAATTTTAGATAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCTATTTAATTTAAGTTATTAA</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="43775" stop="42880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43475" g_stop="43154" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43475" e_stop="43154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTTTATAGCAAAAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAAGTGTATAATTCGCAATTGTATAGTTCGTTGGCCTTTTTCTCTGCAATTTTTGAAGTAAAATATTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="43775" stop="42880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43475" g_stop="43185" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43475" e_stop="43185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTTTATAGCAAAAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAAGTGTATAATTCGCAATTGTATAGTTCGTTGGCCTTTTTCTCTGCAATTTTTGAAGTAAAATATTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E392802" ref_strand="+" ref_description="SGN-E392802 [TUS-36-P16]">
      <seq>tttgaaactgtcacctacatgttgcaggtaatttattttcaattttacactttttataaaaataaaatcagaaaaaaaagaagcaaattaagatattagacctaatccatcgaagcctctattggatagactgaacgaactgtccaatggtaatgaataaggaaccatttgcggagattgattcaagggattaactttatttgaccttattaaagctgaaaagaaatttcatttaaaccctttaattaaacggtatttattttagatactttatatcggcttgtgtctcttttcatatgatgttggtgcaaattagtttccacgtttcataaaattaaaggagtagttgaataaatgtgattgttcaacttaaaaggatcaaaataaatatgtttaacttataaatgacttagattaatttatgtttgaacagtcagcacataaatgtccattttgtttttgtatcctaaatttcatgatgttgaaaattatttaggtaaacaacatttatatgttaaaatttcatattaattgaaattaaagcaagtttttttttatttttatatttaatattattatttgtacaaaagggaggctcagaggcgaaaccatcttatactaggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="47781" stop="46556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47481" g_stop="46856" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E392802" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47481" e_stop="46856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAAACTGTCACCTACATGTTGCAGGTAATTTATTTTCAATTTTACACTTTTTATAAAAATAAAATCAGAAAAAAAAGAAGCAAATTAAGATATTAGACCTAATCCATCGAAGCCTCTATTGGATAGACTGAACGAACTGTCCAATGGTAATGAATAAGGAACCATTTGCGGAGATTGATTCAAGGGATTAACTTTATTTGACCTTATTAAAGCTGAAAAGAAATTTCATTTAAACCCTTTAATTAAACGGTATTTATTTTAGATACTTTATATCGGCTTGTGTCTCTTTTCATATGATGTTGGTGCAAATTAGTTTCCACGTTTCATAAAATTAAAGGAGTAGTTGAATAAATGTGATTGTTCAACTTAAAAGGATCAAAATAAATATGTTTAACTTATAAATGACTTAGATTAATTTATGTTTGAACAGTCAGCACATAAATGTCCATTTTGTTTTTGTATCCTAAATTTCATGATGTTGAAAATTATTTAGGTAAACAACATTTATATGTTAAAATTTCATATTAATTGAAATTAAAGCAAGTTTTTTTTTATTTTTATATTTAATATTATTATTTGTACAAAAGGGAGGCTCAGAGGCGAAACCATCTTATACTAGGAGT</genome_strand>
        <mrna_strand>TTTGAAACTGTCACCTACATGTTGCAGGTAATTTATTTTCAATTTTACACTTTTTATAAAAATAAAATCAGAAAAAAAAGAAGCAAATTAAGATATTAGACCTAATCCATCGAAGCCTCTATTGGATAGACTGAACGAACTGTCCAATGGTAATGAATAAGGAACCATTTGCGGAGATTGATTCAAGGGATTAACTTTATTTGACCTTATTAAAGCTGAAAAGAAATTTCATTTAAACCCTTTAATTAAACGGTATTTATTTTAGATACTTTATATCGGCTTGTGTCTCTTTTCATATGATGTTGGTGCAAATTAGTTTCCACGTTTCATAAAATTAAAGGAGTAGTTGAATAAATGTGATTGTTCAACTTAAAAGGATCAAAATAAATATGTTTAACTTATAAATGACTTAGATTAATTTATGTTTGAACAGTCAGCACATAAATGTCCATTTTGTTTTTGTATCCTAAATTTCATGATGTTGAAAATTATTTAGGTAAACAACATTTATATGTTAAAATTTCATATTAATTGAAATTAAAGCAAGTTTTTTTTTATTTTTATATTTAATATTATTATTTGTACAAAAGGGAGGCTCAGAGGCGAAACCATCTTATACTAGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E239872" ref_strand="+" ref_description="SGN-E239872 [cLED-29-H20]">
      <seq>ttgaaactgtcacctacatgttgcaggtaatttattttcaattttacactttttataaaaataaaatcagaaaaaaaagaagcaaattaagatattagacctaatccatcgaagcctctattggatagactgaacgaactgtccaatggtaatgaataaggaaccatttgcggagattgattcaagggattaactctatttgaccttattaaagctgaaaagaaatttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="47780" stop="46950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47480" g_stop="47250" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E239872" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>231</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47480" e_stop="47250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAACTGTCACCTACATGTTGCAGGTAATTTATTTTCAATTTTACACTTTTTATAAAAATAAAATCAGAAAAAAAAGAAGCAAATTAAGATATTAGACCTAATCCATCGAAGCCTCTATTGGATAGACTGAACGAACTGTCCAATGGTAATGAATAAGGAACCATTTGCGGAGATTGATTCAAGGGATTAACTTTATTTGACCTTATTAAAGCTGAAAAGAAATTTCAT</genome_strand>
        <mrna_strand>TTGAAACTGTCACCTACATGTTGCAGGTAATTTATTTTCAATTTTACACTTTTTATAAAAATAAAATCAGAAAAAAAAGAAGCAAATTAAGATATTAGACCTAATCCATCGAAGCCTCTATTGGATAGACTGAACGAACTGTCCAATGGTAATGAATAAGGAACCATTTGCGGAGATTGATTCAAGGGATTAACTCTATTTGACCTTATTAAAGCTGAAAAGAAATTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E622021" ref_strand="-" ref_description="SGN-E622021 [72383]">
      <seq>cacaaagctggtgccaaatgcctaagactgttagaaggataaagagtccgcggaggtaatgtgaagtggcgtgctttgagattggatactgggaatttctcttggggtancgaggctgttacaaggaagactcgtctattggattggntgtataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgatgcagctccatttaaacagtggtatctccagcactatggagttgaaattggtcgcaagaagaagactgctgcttccaagaaggaaggagaggaggctgaggctgtagcagaggagaagaagagtaaccatgtccaaagaaagctggaaaagaggcaacaggatcgcaagattgacccacatgttgaggagcagtttgcaagtgggcgtctattggctgcaatctcatcacgacctggccagtgtggtcgtgccgatggttacatcttggaaggaaaggaacttgagttttacatgaagaaacttcagaagaagaaagggaagggtgccggtgctgctgcttagagttgcaggctccaatttttaaattatcagaaccaaatagattttggtttttcttccctattcaacagtctcacttcattgaaagggaatgataaacttcttgtatcagagttagattcaagtttgttttgcatatggttaactgagaattttgagaacaacctactttatggaaaaaaaaagaattttgagaacaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="51492" stop="49812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51192" g_stop="50883" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50882" i_stop="50652" i_length="231">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50651" g_stop="50485" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="476" r_length="167" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50484" i_stop="50391" i_length="94">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.836" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50390" g_stop="50107" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="762" r_length="286" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E622021" ref_strand="-">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E622021" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="51192" e_stop="50883"/>
          <exon e_start="50651" e_stop="50485"/>
          <exon e_start="50390" e_stop="50107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAGCTGGTGCCAAATG-CTAAGACTGTTAGAAGGATAA-GAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAGGTATTTGAATTGTCTTTTTCAACTACATGCTTCTCCTATATTATGTGATAATATTTTCCTTATCCATGATTCCATAATCAGTTATATTTTATTTGTCTAACGTTCTTATTCTAATTAAAAAAAAACAAGTGAAACTTTCTTTTTGATAAAGGTTGCAAAGCTTTAGCTACAACCAAATTTAATAGAAGTCTTTCTCTGTTTTGTTGACTTCTATTTGTATGATCCAAACAGGAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGGGTATGAATTCTCTTATCATTATGTATTGTGATATTTCGGTGAAAAATGCCCAATTCCATTGGCTTACACATCTTCTTTCAACGAACTTTGACAGTTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCAATTTTTAAATTATCAGAACAAATTAGATTTTGGTTTTTCTTCCCTATTCAACAGTCTCACTTCATTTAAAGGGAATGATAAACTTCTTGTATCAGAGTTAGATTCAAGTTTGTTTTGCATATGCTTAACTGAGAATTTTGAGAACCACCTACTTTAT-G-AAAAAAAAGAATTTTGAGAACAGCCTT</genome_strand>
        <mrna_strand>CACAAAGCTGGTGCCAAATGCCTAAGACTGTTAGAAGGATAAAGAGTCCGCGGAGGTAATGTGAAGTGGCGTGCTTTGAGATTGGATACTGGGAATTTCTCTTGGGGTANCGAGGCTGTTACAAGGAAGACTCGTCTATTGGATTGGNTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGATGCAGCTCCATTTAAACAGTGGTATCTCCAGCACTATGGAGTTGAAATTGGTCGCAAGAAGAAGACTGCTG---CTTCCAAGAAGGAAGGAGAG.......................................................................................................................................................................................................................................GAGGCTGAGGCTGTAGCAGAGGAGAAGAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTTGAGGAGCAGTTTGCAAGTGGGCGTCTATTGGCTGCAATCTCATCACGACCTGGCCAGTGTGGTCGTGCCGATGG..............................................................................................TTACATCTTGGAAGGAAAGGAACTTGAGTTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCAATTTTTAAATTATCAGAACCAAATAGATTTTGGTTTTTCTTCCCTATTCAACAGTCTCACTTCATTGAAAGGGAATGATAAACTTCTTGTATCAGAGTTAGATTCAAGTTTGTTTTGCATATGGTTAACTGAGAATTTTGAGAACAACCTACTTTATGGAAAAAAAAAGAATTTTGAGAACAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E622031" ref_strand="-" ref_description="SGN-E622031 [72393]">
      <seq>attgacccacatgttgaggagcagtttgcaagtgggcgtctattggctgcaatctcatcacgacctggccagtgtggtcgtgccgatggttacatcttggaaggaaaggaacttgagttttacatgaagaaacttcagaagaagaaagggaagggtgccggtgctgctgcttagagttgcaggctccaatttttaaattatcagaaccaaatagattttggtttttcttccctattcaacagtctcacttcattgaaagggaatgataaacttcttgtatcagagttagattcaagtttgttttgcatatggttaactgagaattttgagaacaacctactttatggaaaaaaaaagaattttgagaacaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="50873" stop="49812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50573" g_stop="50485" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50484" i_stop="50391" i_length="94">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.836" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50390" g_stop="50107" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="375" r_length="286" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E622031" ref_strand="-">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E622031" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50573" e_stop="50485"/>
          <exon e_start="50390" e_stop="50107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGGGTATGAATTCTCTTATCATTATGTATTGTGATATTTCGGTGAAAAATGCCCAATTCCATTGGCTTACACATCTTCTTTCAACGAACTTTGACAGTTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCAATTTTTAAATTATCAGAACAAATTAGATTTTGGTTTTTCTTCCCTATTCAACAGTCTCACTTCATTTAAAGGGAATGATAAACTTCTTGTATCAGAGTTAGATTCAAGTTTGTTTTGCATATGCTTAACTGAGAATTTTGAGAACCACCTACTTTAT-G-AAAAAAAAGAATTTTGAGAACAGCCTT</genome_strand>
        <mrna_strand>ATTGACCCACATGTTGAGGAGCAGTTTGCAAGTGGGCGTCTATTGGCTGCAATCTCATCACGACCTGGCCAGTGTGGTCGTGCCGATGG..............................................................................................TTACATCTTGGAAGGAAAGGAACTTGAGTTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCAATTTTTAAATTATCAGAACCAAATAGATTTTGGTTTTTCTTCCCTATTCAACAGTCTCACTTCATTGAAAGGGAATGATAAACTTCTTGTATCAGAGTTAGATTCAAGTTTGTTTTGCATATGGTTAACTGAGAATTTTGAGAACAACCTACTTTATGGAAAAAAAAAGAATTTTGAGAACAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E484165" ref_strand="-" ref_description="SGN-E484165 [cSTE-12-G24]">
      <seq>ggtaatgtgaagtggcgtgctttgagattggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctattggatgtggtgtataacgcctccaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgatgcagctccatttaaacagtggtatctccagcactatggagttgaaattggtcgcaagaagaagactgctgcttccaagaaggaaggagaggaggctgaggctgtagcagaggagaagaagagtaaccatgtccaaagaaagctggaaaagaggcaacaggatcgcaagattgacccacatgttgaggagcaatttgcaagtgggcgtctattggctgcaatctcatcacgacctggccagtgtggtcgtgctgatggttacatcttggaaggaaaggaacttgagttttacatgaagaaacttcagaagaagaaagggaagggtgccggtgctgctgcttagagttgcaggctccattttttaaattatcagaaccaattagattttggtttttcttccctattcaacagtctcacttcattgaaagggaatgataaacttcttgtatcagagttagattcaagtttgttttgcatatggttaactgagaattttgagaacaacctactttatggaaaaaaagaattctgagaacaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="51440" stop="49812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51140" g_stop="50883" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50882" i_stop="50652" i_length="231">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50651" g_stop="50485" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="422" r_length="167" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50484" i_stop="50391" i_length="94">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.836" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50390" g_stop="50112" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="701" r_length="279" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="702" polyA_stop="721"/>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E484165" ref_strand="-">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484165" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="51140" e_stop="50883"/>
          <exon e_start="50651" e_stop="50485"/>
          <exon e_start="50390" e_stop="50112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAGGTATTTGAATTGTCTTTTTCAACTACATGCTTCTCCTATATTATGTGATAATATTTTCCTTATCCATGATTCCATAATCAGTTATATTTTATTTGTCTAACGTTCTTATTCTAATTAAAAAAAAACAAGTGAAACTTTCTTTTTGATAAAGGTTGCAAAGCTTTAGCTACAACCAAATTTAATAGAAGTCTTTCTCTGTTTTGTTGACTTCTATTTGTATGATCCAAACAGGAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGGGTATGAATTCTCTTATCATTATGTATTGTGATATTTCGGTGAAAAATGCCCAATTCCATTGGCTTACACATCTTCTTTCAACGAACTTTGACAGTTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCAATTTTTAAATTATCAGAACAAATTAGATTTTGGTTTTTCTTCCCTATTCAACAGTCTCACTTCATTTAAAGGGAATGATAAACTTCTTGTATCAGAGTTAGATTCAAGTTTGTTTTGCATATGCTTAACTGAGAATTTTGAGAACCACCTACTTTATGAAAAAAAAGAATTTTGAGAACA</genome_strand>
        <mrna_strand>GGTAATGTGAAGTGGCGTGCTTTGAGATTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTATTGGATGTGGTGTATAACGCCTCCAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGATGCAGCTCCATTTAAACAGTGGTATCTCCAGCACTATGGAGTTGAAATTGGTCGCAAGAAGAAGACTGCTG---CTTCCAAGAAGGAAGGAGAG.......................................................................................................................................................................................................................................GAGGCTGAGGCTGTAGCAGAGGAGAAGAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTTGAGGAGCAATTTGCAAGTGGGCGTCTATTGGCTGCAATCTCATCACGACCTGGCCAGTGTGGTCGTGCTGATGG..............................................................................................TTACATCTTGGAAGGAAAGGAACTTGAGTTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCATTTTTTAAATTATCAGAACCAATTAGATTTTGGTTTTTCTTCCCTATTCAACAGTCTCACTTCATTGAAAGGGAATGATAAACTTCTTGTATCAGAGTTAGATTCAAGTTTGTTTTGCATATGGTTAACTGAGAATTTTGAGAACAACCTACTTTATGGAAAAAAAGAATTCTGAGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E280113" ref_strand="+" ref_description="SGN-E280113 [cLEL-7-P24]">
      <seq>gcacgagaggaacttgaattttacatgaagaaacttcagaagaagaaagggaagggtgccggtgctgctgcttagagttgcaggctccaatttttaaattatcagaacaaattagattttggtttttcttccctattcaacagtctcacttcatttaaagggaatgataaacttcttgtatcagagttagattcaagtttgttttgcatatgcttaactgagaattttgagaaccacctactttatgaaaaaaaagaattttgagaacaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="50680" stop="49812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50380" g_stop="50112" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="270" polyA_stop="287"/>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E280113" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>269</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50380" e_stop="50112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCAATTTTTAAATTATCAGAACAAATTAGATTTTGGTTTTTCTTCCCTATTCAACAGTCTCACTTCATTTAAAGGGAATGATAAACTTCTTGTATCAGAGTTAGATTCAAGTTTGTTTTGCATATGCTTAACTGAGAATTTTGAGAACCACCTACTTTATGAAAAAAAAGAATTTTGAGAACA</genome_strand>
        <mrna_strand>GCACGAGAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCAATTTTTAAATTATCAGAACAAATTAGATTTTGGTTTTTCTTCCCTATTCAACAGTCTCACTTCATTTAAAGGGAATGATAAACTTCTTGTATCAGAGTTAGATTCAAGTTTGTTTTGCATATGCTTAACTGAGAATTTTGAGAACCACCTACTTTATGAAAAAAAAGAATTTTGAGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E484039" ref_strand="-" ref_description="SGN-E484039 [cSTE-11-J14]">
      <seq>caagaagaagactgctgcttccaagaaggaaggagaggaggctgaggctgtagcagaggagaagaagagtaaccatgtccaaagaaagctggaaaagaggcaacaggatcgcaagattgacccacatgttgaggagcaatttgcaagtgggcgtctattggctgcaatctcatcacgacctggccagtgtggtcgtgctgatggttacatcttggaaggaaaggaacttgagttttacatgaagaaacttcagaagaagaaagggaagggtgccggtgctgctgcttagagttgcaggctccattttttaaattatcagaaccaattagattttggtttttcttccctattcaacagtctcacttcattgaaagggaatgataaacttcttgtatcagagttagattcaagtttgttttgcatatggttaactgagaattttgagaacaacctactttgtggaaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="51222" stop="49825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50922" g_stop="50883" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50882" i_stop="50652" i_length="231">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50651" g_stop="50485" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="204" r_length="167" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50484" i_stop="50391" i_length="94">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.836" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50390" g_stop="50125" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="470" r_length="266" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E484039" ref_strand="-">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484039" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50922" e_stop="50883"/>
          <exon e_start="50651" e_stop="50485"/>
          <exon e_start="50390" e_stop="50125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAGGTATTTGAATTGTCTTTTTCAACTACATGCTTCTCCTATATTATGTGATAATATTTTCCTTATCCATGATTCCATAATCAGTTATATTTTATTTGTCTAACGTTCTTATTCTAATTAAAAAAAAACAAGTGAAACTTTCTTTTTGATAAAGGTTGCAAAGCTTTAGCTACAACCAAATTTAATAGAAGTCTTTCTCTGTTTTGTTGACTTCTATTTGTATGATCCAAACAGGAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGGGTATGAATTCTCTTATCATTATGTATTGTGATATTTCGGTGAAAAATGCCCAATTCCATTGGCTTACACATCTTCTTTCAACGAACTTTGACAGTTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCAATTTTTAAATTATCAGAACAAATTAGATTTTGGTTTTTCTTCCCTATTCAACAGTCTCACTTCATTTAAAGGGAATGATAAACTTCTTGTATCAGAGTTAGATTCAAGTTTGTTTTGCATATGCTTAACTGAGAATTTTGAGAACCACCTACTTTATGAAAAAAAAG</genome_strand>
        <mrna_strand>CAAGAAGAAGACTGCTG---CTTCCAAGAAGGAAGGAGAG.......................................................................................................................................................................................................................................GAGGCTGAGGCTGTAGCAGAGGAGAAGAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTTGAGGAGCAATTTGCAAGTGGGCGTCTATTGGCTGCAATCTCATCACGACCTGGCCAGTGTGGTCGTGCTGATGG..............................................................................................TTACATCTTGGAAGGAAAGGAACTTGAGTTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCATTTTTTAAATTATCAGAACCAATTAGATTTTGGTTTTTCTTCCCTATTCAACAGTCTCACTTCATTGAAAGGGAATGATAAACTTCTTGTATCAGAGTTAGATTCAAGTTTGTTTTGCATATGGTTAACTGAGAATTTTGAGAACAACCTACTTTGTGGAAAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E733334" ref_strand="+" ref_description="SGN-E733334 [LB04CD06]">
      <seq>cgtctttgagaaaatcgaaaccctaaggacctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagcagaagacttggaggaagaagagaaagtatgagcttggcagacagcccgcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgaggaggtaatgtgaagtggcgtgctttgaggttggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctgttggatgtggtgtataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgacgcagctccatttaagcagtggtatctccagcactatggagttgaaatcggtcgcaagaagaagactgctgcttcttccaaaaaggaaggagaggaggctgaggctgtagcagaggagaaaaagagtaaccatgtccaaagaaagctggaaaagaggcaacaggatcgcaagattgacccacatgtcgaggagcaatttgctagtgggcgtctattggctgcaatctcatcgcgacctggccagtgtggtcgtgctgatggttacatattggaaggaaaggaacttgaattttacatgaagaaacttcagaagaagaaagggaagggtgccggtgctgctgcttanagttgcaggctccaatttttaaattatcagaacaaattagattttggtttttcttccctattcaacagtctcacttcatttaaaggaatgataaacttcttgtatcagagttagattcaagtttgttttgcatatgcttaactgagaattttgaaacccccctactttatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52684" stop="49831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52384" g_stop="52334" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52333" i_stop="52218" i_length="116">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52217" g_stop="52145" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="124" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52144" i_stop="51220" i_length="925">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51219" g_stop="50883" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="461" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50882" i_stop="50652" i_length="231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50651" g_stop="50485" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="628" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50484" i_stop="50391" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50390" g_stop="50131" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="887" r_length="259" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E733334" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52384" e_stop="52334"/>
          <exon e_start="52217" e_stop="52145"/>
          <exon e_start="51219" e_stop="50883"/>
          <exon e_start="50651" e_stop="50485"/>
          <exon e_start="50390" e_stop="50131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAGGTATTTGAATTGTCTTTTTCAACTACATGCTTCTCCTATATTATGTGATAATATTTTCCTTATCCATGATTCCATAATCAGTTATATTTTATTTGTCTAACGTTCTTATTCTAATTAAAAAAAAACAAGTGAAACTTTCTTTTTGATAAAGGTTGCAAAGCTTTAGCTACAACCAAATTTAATAGAAGTCTTTCTCTGTTTTGTTGACTTCTATTTGTATGATCCAAACAGGAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGGGTATGAATTCTCTTATCATTATGTATTGTGATATTTCGGTGAAAAATGCCCAATTCCATTGGCTTACACATCTTCTTTCAACGAACTTTGACAGTTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCAATTTTTAAATTATCAGAACAAATTAGATTTTGGTTTTTCTTCCCTATTCAACAGTCTCACTTCATTTAAAGGGAATGATAAACTTCTTGTATCAGAGTTAGATTCAAGTTTGTTTTGCATATGCTTAACTGAGAATTTTGAGAACCACCTACTTTATGAAA</genome_strand>
        <mrna_strand>CGTCTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAG.......................................................................................................................................................................................................................................GAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGG..............................................................................................TTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTANAGTTGCAGGCTCCAATTTTTAAATTATCAGAACAAATTAGATTTTGGTTTTTCTTCCCTATTCAACAGTCTCACTTCATTTAAA-GGAATGATAAACTTCTTGTATCAGAGTTAGATTCAAGTTTGTTTTGCATATGCTTAACTGAGAATTTTGAAACCCCCCTACTTTATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E601721" ref_strand="+" ref_description="SGN-E601721 [54767]">
      <seq>gaaagtatgagcttggcagacagccagcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgcggaggtaatgtgaagtggcgtgctttgagattggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctattggatgtggtgtataacgcctctaacaatgaattggttaggacacaaaccctggtgaagagtgcaattattcaggttgatgcagctccatttaaacagtggtatctccagcactatggagttgaaattggtcgcaagaagaagactgctgcttccaagaaggaaggagaggaggctgaggctgtagcagaggagaagaagagtaaccatgtccaaagaaagctggaaaagaggcaacaggatcgcaagattgacccacacgttgaggagcaatttgcaagtgggcgtctattggctgcaatctcatcacgacctggccagtgtggtcgtgctgatggttacatcttggaaggaaaggaacttgagttttacatgaagaaacttcagaagaagaaagggacaggtgccggtgctgctgcttagagttgcaggctccaatttttaaattatcagaacaagttagattggttttcttccctattcaagtcgcacttccattgaaacgggaatgattaacttcttgtatcacagttagattcaacgtttggtttgcatatggttaactgaaacttttgagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="51523" stop="49941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51223" g_stop="50883" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50882" i_stop="50652" i_length="231">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50651" g_stop="50485" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="505" r_length="167" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50484" i_stop="50391" i_length="94">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.836" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50390" g_stop="50147" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="747" r_length="242" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E601721" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E601721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51223" e_stop="50883"/>
          <exon e_start="50651" e_stop="50485"/>
          <exon e_start="50390" e_stop="50147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAGGTATTTGAATTGTCTTTTTCAACTACATGCTTCTCCTATATTATGTGATAATATTTTCCTTATCCATGATTCCATAATCAGTTATATTTTATTTGTCTAACGTTCTTATTCTAATTAAAAAAAAACAAGTGAAACTTTCTTTTTGATAAAGGTTGCAAAGCTTTAGCTACAACCAAATTTAATAGAAGTCTTTCTCTGTTTTGTTGACTTCTATTTGTATGATCCAAACAGGAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGGGTATGAATTCTCTTATCATTATGTATTGTGATATTTCGGTGAAAAATGCCCAATTCCATTGGCTTACACATCTTCTTTCAACGAACTTTGACAGTTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCAATTTTTAAATTATCAGAACAAATTAGATTTTGGTTTTTCTTCCCTATTCAACAGTCTCACTT-CATTTAAA-GGGAATGATAAACTTCTTGTATCAGAGTTAGATTCAA-GTTTGTTTTGCATATGCTTAACTGAGAATTTTGAGAAC</genome_strand>
        <mrna_strand>GAAAGTATGAGCTTGGCAGACAGCCAGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGCGGAGGTAATGTGAAGTGGCGTGCTTTGAGATTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTATTGGATGTGGTGTATAACGCCTCTAACAATGAATTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGATGCAGCTCCATTTAAACAGTGGTATCTCCAGCACTATGGAGTTGAAATTGGTCGCAAGAAGAAGACTGCTG---CTTCCAAGAAGGAAGGAGAG.......................................................................................................................................................................................................................................GAGGCTGAGGCTGTAGCAGAGGAGAAGAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACACGTTGAGGAGCAATTTGCAAGTGGGCGTCTATTGGCTGCAATCTCATCACGACCTGGCCAGTGTGGTCGTGCTGATGG..............................................................................................TTACATCTTGGAAGGAAAGGAACTTGAGTTTTACATGAAGAAACTTCAGAAGAAGAAAGGGACAGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCAATTTTTAAATTATCAGAACAAGTTAGA--TTGG-TTTTCTTCCCTATTC-A-AGTCGCACTTCCATTGAAACGGGAATGATTAACTTCTTGTATCACAGTTAGATTCAACGTTTGGTTTGCATATGGTTAACTGAAACTTTTGAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E714496" ref_strand="+" ref_description="SGN-E714496 [FB11CD12]">
      <seq>gtctttgagaaaatcgaaaccctaaggacctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagcagaagacttggaggaagaagagaaagtatgagcttggcagacagcccgcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgaggaggtaatgtgaagtggcgtgctttgaggttggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctgttggatgtggtgtataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgacgcagctccatttaagcagtggtatctccagcactatggagttgaaatcggtcgcaagaagaagactgctgcttcttccaaaaaggaaggagaggaggctgaggctgtagcagaggagaaaaagagtaaccatgtccaaagaaagctggaaaagaggcaacaggatcgcaagattgacccacatgtcgaggagcaatttgctagtgggcgtctattggctgcaatctcatcgcgacctggccagtgtggtcgtgctgatggttacatattggaaggaaaggaacttgaattttacatgaagaaacttcagaagaagaaagggaagggtgccggtgctgctgcttagagttgcaggctcaaatttttaaattatcagaacaaattagattttggtttttcttccctattcaacagtctcacttcatttaaagggaatgaataaacttcttgtatcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52683" stop="49896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52383" g_stop="52334" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52333" i_stop="52218" i_length="116">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52217" g_stop="52145" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="123" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52144" i_stop="51220" i_length="925">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51219" g_stop="50883" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="460" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50882" i_stop="50652" i_length="231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50651" g_stop="50485" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="627" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50484" i_stop="50391" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50390" g_stop="50187" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="832" r_length="205" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E714496" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52383" e_stop="52334"/>
          <exon e_start="52217" e_stop="52145"/>
          <exon e_start="51219" e_stop="50883"/>
          <exon e_start="50651" e_stop="50485"/>
          <exon e_start="50390" e_stop="50187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAGGTATTTGAATTGTCTTTTTCAACTACATGCTTCTCCTATATTATGTGATAATATTTTCCTTATCCATGATTCCATAATCAGTTATATTTTATTTGTCTAACGTTCTTATTCTAATTAAAAAAAAACAAGTGAAACTTTCTTTTTGATAAAGGTTGCAAAGCTTTAGCTACAACCAAATTTAATAGAAGTCTTTCTCTGTTTTGTTGACTTCTATTTGTATGATCCAAACAGGAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGGGTATGAATTCTCTTATCATTATGTATTGTGATATTTCGGTGAAAAATGCCCAATTCCATTGGCTTACACATCTTCTTTCAACGAACTTTGACAGTTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCAATTTTTAAATTATCAGAACAAATTAGATTTTGGTTTTTCTTCCCTATTCAACAGTCTCACTTCATTTAAAGGGAATG-ATAAACTTCTTGTATCAGAGTTAGATTC</genome_strand>
        <mrna_strand>GTCTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAG.......................................................................................................................................................................................................................................GAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGG..............................................................................................TTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCAAATTTTTAAATTATCAGAACAAATTAGATTTTGGTTTTTCTTCCCTATTCAACAGTCTCACTTCATTTAAAGGGAATGAATAAACTTCTTGTATCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E338916" ref_strand="+" ref_description="SGN-E338916 [cTOE-21-P17]">
      <seq>ccgggctgcatgcgaggctgttacaaggaagtctcgtctgttggatgtggtgtataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgacgcagctccatttaagcagtggtatctccagcactatggagttgaaatcggtcgcaagaagaagactgctgcttcttccaaaaaggaaggagaggaggctgaggctgtagcagaggagaaaaagagtaaccatgtccaaagaaagctggaaaagaggcaacaggatcgcaagattgacccacatgtcgaggagcaatttgctagtgggcgtctattggctgcaatctcatcgcgacctggccagtgtggtcgtgctgatggttacatattggaaggaaaggaacttgaattttacatgaagaaacttcagaagaagaaagggaagggtgccggtgctgctgcttagagttgcaggctccaatttttaaattatcagaacaaattagattttggtttttcttccctattcaacagtctcacttcatttaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="51388" stop="49920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51095" g_stop="50883" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50882" i_stop="50652" i_length="231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50651" g_stop="50485" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="381" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50484" i_stop="50391" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50390" g_stop="50220" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="552" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E338916" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51095" e_stop="50883"/>
          <exon e_start="50651" e_stop="50485"/>
          <exon e_start="50390" e_stop="50220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGGGGTA-GCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAGGTATTTGAATTGTCTTTTTCAACTACATGCTTCTCCTATATTATGTGATAATATTTTCCTTATCCATGATTCCATAATCAGTTATATTTTATTTGTCTAACGTTCTTATTCTAATTAAAAAAAAACAAGTGAAACTTTCTTTTTGATAAAGGTTGCAAAGCTTTAGCTACAACCAAATTTAATAGAAGTCTTTCTCTGTTTTGTTGACTTCTATTTGTATGATCCAAACAGGAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGGGTATGAATTCTCTTATCATTATGTATTGTGATATTTCGGTGAAAAATGCCCAATTCCATTGGCTTACACATCTTCTTTCAACGAACTTTGACAGTTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCAATTTTTAAATTATCAGAACAAATTAGATTTTGGTTTTTCTTCCCTATTCAACAGTCTCACTTCATTTAAAGG</genome_strand>
        <mrna_strand>CCGGGCTGCATGCGAGGCTGTTACAAGGAAGTCTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAG.......................................................................................................................................................................................................................................GAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGG..............................................................................................TTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCAATTTTTAAATTATCAGAACAAATTAGATTTTGGTTTTTCTTCCCTATTCAACAGTCTCACTTCATTTAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E561318" ref_strand="+" ref_description="SGN-E561318 [17290]">
      <seq>ctttgagaacatcgaaaccctaaggacctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagaagaaggcttggaggaagaagagaaagtatgagcttggcagacagccagcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgaggaggtaatgtgaagtggcgtgctttgaggttggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctgttggatgtggtatataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgacgcagctccatttaaacagtggtatctccagcactatggagttgagattggtcgcaaaaagaagactgctgcttccaagaaggaaggagaggaggctgaggctgtagcagaggagaagaagagtaaccatgtccaaagaaagctggaaaagaggcaacaggatcgcaagattgacccacatgttgaggagcaatttgctagtgggcgtctattggctgcaatctcatcacgacctggccagtgtggtcgtgctgatggttacatcttggaaggaaaggaacttgagttttacatgaagaaacttcagaagaagaaagggaagggtgccggtgctgctgctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52681" stop="50007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52381" g_stop="52334" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52333" i_stop="52218" i_length="116">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52217" g_stop="52145" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="121" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52144" i_stop="51220" i_length="925">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51219" g_stop="50883" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="455" r_length="334" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50882" i_stop="50652" i_length="231">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50651" g_stop="50485" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="622" r_length="167" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50484" i_stop="50391" i_length="94">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.836" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50390" g_stop="50307" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="706" r_length="84" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E561318" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52381" e_stop="52334"/>
          <exon e_start="52217" e_stop="52145"/>
          <exon e_start="51219" e_stop="50883"/>
          <exon e_start="50651" e_stop="50485"/>
          <exon e_start="50390" e_stop="50307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAGGTATTTGAATTGTCTTTTTCAACTACATGCTTCTCCTATATTATGTGATAATATTTTCCTTATCCATGATTCCATAATCAGTTATATTTTATTTGTCTAACGTTCTTATTCTAATTAAAAAAAAACAAGTGAAACTTTCTTTTTGATAAAGGTTGCAAAGCTTTAGCTACAACCAAATTTAATAGAAGTCTTTCTCTGTTTTGTTGACTTCTATTTGTATGATCCAAACAGGAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGGGTATGAATTCTCTTATCATTATGTATTGTGATATTTCGGTGAAAAATGCCCAATTCCATTGGCTTACACATCTTCTTTCAACGAACTTTGACAGTTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTA</genome_strand>
        <mrna_strand>CTTTGAGAACATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGAAGAAGGCTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCAGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTATATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAACAGTGGTATCTCCAGCACTATGGAGTTGAGATTGGTCGCAAAAAGAAGACTGCTG---CTTCCAAGAAGGAAGGAGAG.......................................................................................................................................................................................................................................GAGGCTGAGGCTGTAGCAGAGGAGAAGAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTTGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCACGACCTGGCCAGTGTGGTCGTGCTGATGG..............................................................................................TTACATCTTGGAAGGAAAGGAACTTGAGTTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E601532" ref_strand="+" ref_description="SGN-E601532 [54572]">
      <seq>gagaaaatctaaaccctaaggacctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagaagaaggcttggaggaagaagagaaagtatgagcttggcagacagccagcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgcggaggtaatgtgaagtggcgtgctttgagattggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctattggatgtggtgtataacgcctctaacaatgaattggttaggacacaaaccctggtgaagagtgcaattattcaggttgatgcagctccatttaaacagtggtatctccagcactatggagttgaaattggtcgcaagaagaagactgctgcttccaagaaggaaggagaggaggctgaggctgtagcagaggagaagaacagtaaccatgtccaaagaaagctggaaaagaggcaacaggatcgcaagattgacccacacgttgaggagcaatttgcaagtgggcgtctattggctgcaatctcatcacgacctggccagtgtggtcgtgctgatggttacatcttggaaggaaaggaacttgagttttacctgaagaaacttcagaagaagaaagggaagggtgccggtgctgctgctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52677" stop="50007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52377" g_stop="52334" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52333" i_stop="52218" i_length="116">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52217" g_stop="52145" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="117" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52144" i_stop="51220" i_length="925">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51219" g_stop="50883" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="451" r_length="334" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50882" i_stop="50652" i_length="231">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50651" g_stop="50485" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="618" r_length="167" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50484" i_stop="50391" i_length="94">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.836" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50390" g_stop="50307" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="702" r_length="84" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E601532" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E601532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52377" e_stop="52334"/>
          <exon e_start="52217" e_stop="52145"/>
          <exon e_start="51219" e_stop="50883"/>
          <exon e_start="50651" e_stop="50485"/>
          <exon e_start="50390" e_stop="50307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAGGTATTTGAATTGTCTTTTTCAACTACATGCTTCTCCTATATTATGTGATAATATTTTCCTTATCCATGATTCCATAATCAGTTATATTTTATTTGTCTAACGTTCTTATTCTAATTAAAAAAAAACAAGTGAAACTTTCTTTTTGATAAAGGTTGCAAAGCTTTAGCTACAACCAAATTTAATAGAAGTCTTTCTCTGTTTTGTTGACTTCTATTTGTATGATCCAAACAGGAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGGGTATGAATTCTCTTATCATTATGTATTGTGATATTTCGGTGAAAAATGCCCAATTCCATTGGCTTACACATCTTCTTTCAACGAACTTTGACAGTTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTA</genome_strand>
        <mrna_strand>GAGAAAATCTAAACCCTAAGGACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGAAGAAGGCTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCAGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGCGGAGGTAATGTGAAGTGGCGTGCTTTGAGATTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTATTGGATGTGGTGTATAACGCCTCTAACAATGAATTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGATGCAGCTCCATTTAAACAGTGGTATCTCCAGCACTATGGAGTTGAAATTGGTCGCAAGAAGAAGACTGCTG---CTTCCAAGAAGGAAGGAGAG.......................................................................................................................................................................................................................................GAGGCTGAGGCTGTAGCAGAGGAGAAGAACAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACACGTTGAGGAGCAATTTGCAAGTGGGCGTCTATTGGCTGCAATCTCATCACGACCTGGCCAGTGTGGTCGTGCTGATGG..............................................................................................TTACATCTTGGAAGGAAAGGAACTTGAGTTTTACCTGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E482106" ref_strand="+" ref_description="SGN-E482106 [cSTD-20-N18]">
      <seq>cgtccgtctttgagaacatcgaaaccctaaggacctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagaagaaggcttggaggaagaagagaaagtatgagcttggcagacagccagcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgcggaggtaatgtgaagtggcgtgctttgagattggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctattggatgtggtgtataacgcctccaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgatgcagctccatttaaacagtggtatctccagcactatggagttgaaattggtcgcaagaagaagactgctgcttccaagaaggaaggagaggaggctgaggctgtagcagaggagaagaagagtaaccatgtccaaagaaagctggaaaagaggcaacaggatcgcaagattgacccacatgttgaggagcaatttgcaagtgggcgtctattggctgcaatctcatcacgacctggccagtgtggtcgtgctgatggttacatcttggaanggaaagaacttgagttttacatgaagaaacttcanaagaagaaagggaagggtgccggtgctgctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52688" stop="50009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52388" g_stop="52334" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52333" i_stop="52218" i_length="116">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52217" g_stop="52145" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="128" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52144" i_stop="51220" i_length="925">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51219" g_stop="50883" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="462" r_length="334" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50882" i_stop="50652" i_length="231">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50651" g_stop="50485" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="629" r_length="167" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50484" i_stop="50391" i_length="94">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.836" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50390" g_stop="50309" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="711" r_length="82" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E482106" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52388" e_stop="52334"/>
          <exon e_start="52217" e_stop="52145"/>
          <exon e_start="51219" e_stop="50883"/>
          <exon e_start="50651" e_stop="50485"/>
          <exon e_start="50390" e_stop="50309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCCGTCTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAGGTATTTGAATTGTCTTTTTCAACTACATGCTTCTCCTATATTATGTGATAATATTTTCCTTATCCATGATTCCATAATCAGTTATATTTTATTTGTCTAACGTTCTTATTCTAATTAAAAAAAAACAAGTGAAACTTTCTTTTTGATAAAGGTTGCAAAGCTTTAGCTACAACCAAATTTAATAGAAGTCTTTCTCTGTTTTGTTGACTTCTATTTGTATGATCCAAACAGGAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGGGTATGAATTCTCTTATCATTATGTATTGTGATATTTCGGTGAAAAATGCCCAATTCCATTGGCTTACACATCTTCTTTCAACGAACTTTGACAGTTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCT</genome_strand>
        <mrna_strand>CGTCCGTCTTTGAGAACATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGAAGAAGGCTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCAGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGCGGAGGTAATGTGAAGTGGCGTGCTTTGAGATTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTATTGGATGTGGTGTATAACGCCTCCAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGATGCAGCTCCATTTAAACAGTGGTATCTCCAGCACTATGGAGTTGAAATTGGTCGCAAGAAGAAGACTGCTG---CTTCCAAGAAGGAAGGAGAG.......................................................................................................................................................................................................................................GAGGCTGAGGCTGTAGCAGAGGAGAAGAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTTGAGGAGCAATTTGCAAGTGGGCGTCTATTGGCTGCAATCTCATCACGACCTGGCCAGTGTGGTCGTGCTGATGG..............................................................................................TTACATCTTGGAANGGAAAGAACTTGAGTTTTACATGAAGAAACTTCANAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E309112" ref_strand="-" ref_description="SGN-E309112 [cLEZ-1-C19]">
      <seq>tgtccaaaaaagctggaaagaggcacaggatcgcaagattgacccacatgtcgaggagcaatttgctagtgggcgtctattggctgcaatctcatgcgactggccagtgtggtcgtgcttatggttacatattggaaggaaaggaccttgaattttacatgaagaaacttcagaagaagaaagggaagggtgccggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="50913" stop="50018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50613" g_stop="50485" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50484" i_stop="50391" i_length="94">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.836" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50390" g_stop="50318" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="197" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E309112" ref_strand="-">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>202</cumulative_length_of_scored_exons>
        <coverage percentage="1.025" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309112" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50613" e_stop="50485"/>
          <exon e_start="50390" e_stop="50318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGGGTATGAATTCTCTTATCATTATGTATTGTGATATTTCGGTGAAAAATGCCCAATTCCATTGGCTTACACATCTTCTTTCAACGAACTTTGACAGTTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGT</genome_strand>
        <mrna_strand>TGTCCAAA-AAAGCTGG-AAAGAGGC-ACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCAT-GCGA-CTGGCCAGTGTGGTCGTGCTTATGG..............................................................................................TTACATATTGGAAGGAAAGGACCTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E451503" ref_strand="+" ref_description="SGN-E451503 [cSTS-12-P2]">
      <seq>ccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagaagaaggcttggaggaagaagagaaagtatgagcttggcagacagccagcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgaggaggtaatgtgaagtggcgtgctttgaggttggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctgttggatgtggtatataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgacgcagctccatttaaacagtggtatctccagcactatggagttgagattggtcgcaaaaagaagactgctgcttccaagaaggaaggagaggaggctgaggctgtagcagaggagaagaagagtaaccatgtccaaagaaagctggaaaagaggcaacaggatcgcaagattgacccacatgttgaggagcaatttgctagtgggcgtctattggctgcaatctcatcacgacctggccagtgtgggtcgtgctgatggttacatcttggaaggaaaggaacttgagttttacatgaagaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52652" stop="50046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52352" g_stop="52334" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52333" i_stop="52218" i_length="116">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52217" g_stop="52145" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="92" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52144" i_stop="51220" i_length="925">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51219" g_stop="50883" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="426" r_length="334" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50882" i_stop="50652" i_length="231">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50651" g_stop="50485" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="594" r_length="168" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50484" i_stop="50391" i_length="94">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.836" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50390" g_stop="50346" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="639" r_length="45" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E451503" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52352" e_stop="52334"/>
          <exon e_start="52217" e_stop="52145"/>
          <exon e_start="51219" e_stop="50883"/>
          <exon e_start="50651" e_stop="50485"/>
          <exon e_start="50390" e_stop="50346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAGGTATTTGAATTGTCTTTTTCAACTACATGCTTCTCCTATATTATGTGATAATATTTTCCTTATCCATGATTCCATAATCAGTTATATTTTATTTGTCTAACGTTCTTATTCTAATTAAAAAAAAACAAGTGAAACTTTCTTTTTGATAAAGGTTGCAAAGCTTTAGCTACAACCAAATTTAATAGAAGTCTTTCTCTGTTTTGTTGACTTCTATTTGTATGATCCAAACAGGAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGT-GGTCGTGCTGATGGGTATGAATTCTCTTATCATTATGTATTGTGATATTTCGGTGAAAAATGCCCAATTCCATTGGCTTACACATCTTCTTTCAACGAACTTTGACAGTTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACT</genome_strand>
        <mrna_strand>CCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGAAGAAGGCTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCAGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTATATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAACAGTGGTATCTCCAGCACTATGGAGTTGAGATTGGTCGCAAAAAGAAGACTGCTG---CTTCCAAGAAGGAAGGAGAG.......................................................................................................................................................................................................................................GAGGCTGAGGCTGTAGCAGAGGAGAAGAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTTGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCACGACCTGGCCAGTGTGGGTCGTGCTGATGG..............................................................................................TTACATCTTGGAAGGAAAGGAACTTGAGTTTTACATGAAGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E477727" ref_strand="+" ref_description="SGN-E477727 [cSTD-1-H1]">
      <seq>agaacatcgaaaccctaaggacctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagaagaaggcttggaggaagaagagaaagtatgagcttggcagacagccagcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgcggaggtaatgtgaagtggcgtgctttgagattggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctattggatgtggtgtataacgcctccaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgatgcagctccatttaaacagtggtatctccagcactatggagttgaaattggtcgcaagaagaagactgctgcttccaagaaggaaggagaggaggctgaggctgtagcagaggagaagaagagtaaccatgtccaaagaaagctggaaaagaggcaacaggatcgcaagattgacccacatgttgaggagcaattngcaagtgggcgtctattggctgcaatctcatcacgacctgnccagtgtgggtcgtgctgatggttacatcttgggaggaaaaggacttgagttttacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52676" stop="50182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52376" g_stop="52334" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52333" i_stop="52218" i_length="116">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52217" g_stop="52145" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="116" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52144" i_stop="51220" i_length="925">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51219" g_stop="50883" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="450" r_length="334" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50882" i_stop="50652" i_length="231">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50651" g_stop="50485" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="618" r_length="168" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50484" i_stop="50391" i_length="94">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.836" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50390" g_stop="50354" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="655" r_length="37" r_score="0.865"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E477727" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52376" e_stop="52334"/>
          <exon e_start="52217" e_stop="52145"/>
          <exon e_start="51219" e_stop="50883"/>
          <exon e_start="50651" e_stop="50485"/>
          <exon e_start="50390" e_stop="50354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAGGTATTTGAATTGTCTTTTTCAACTACATGCTTCTCCTATATTATGTGATAATATTTTCCTTATCCATGATTCCATAATCAGTTATATTTTATTTGTCTAACGTTCTTATTCTAATTAAAAAAAAACAAGTGAAACTTTCTTTTTGATAAAGGTTGCAAAGCTTTAGCTACAACCAAATTTAATAGAAGTCTTTCTCTGTTTTGTTGACTTCTATTTGTATGATCCAAACAGGAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGT-GGTCGTGCTGATGGGTATGAATTCTCTTATCATTATGTATTGTGATATTTCGGTGAAAAATGCCCAATTCCATTGGCTTACACATCTTCTTTCAACGAACTTTGACAGTTACATATTGGAAGGAAAGGAACTTGAATTTTACATG</genome_strand>
        <mrna_strand>AGAACATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGAAGAAGGCTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCAGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGCGGAGGTAATGTGAAGTGGCGTGCTTTGAGATTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTATTGGATGTGGTGTATAACGCCTCCAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGATGCAGCTCCATTTAAACAGTGGTATCTCCAGCACTATGGAGTTGAAATTGGTCGCAAGAAGAAGACTGCTG---CTTCCAAGAAGGAAGGAGAG.......................................................................................................................................................................................................................................GAGGCTGAGGCTGTAGCAGAGGAGAAGAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTTGAGGAGCAATTNGCAAGTGGGCGTCTATTGGCTGCAATCTCATCACGACCTGNCCAGTGTGGGTCGTGCTGATGG..............................................................................................TTACATCTTGGGAGGAAAAGGACTTGAGTTTTACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E317755" ref_strand="+" ref_description="SGN-E317755 [cTOA-30-M13]">
      <seq>gccgtcgtccgtctttgagaaaatcgaaaccctaaggacctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagcagaagacttggaggaagaagagaaagtatgagcttggcagacagcccgcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgaggaggtaatgtgaagtggcgtgctttgaggttggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctgttggatgtggtgtataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgacgcagctccatttaagcagtggtatctccagcactatggagttgaaatcggtcgcaagaagaagactgctgcttcttccaaaaaggaaggagaggaggctgaggctgtancagaggagaaaaagagtaaccatgtccaaagaaagctggaaaagaggcaacaggatcgcaagattgacccacatgtcgaggagcaatttgctagtggggcgtctattggctggcatctcatcgcgacctggccagtgtggtcgtgctgatgggtacatattggaaggaaaggactttgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52693" stop="50062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52393" g_stop="52334" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52333" i_stop="52218" i_length="116">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52217" g_stop="52145" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="133" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52144" i_stop="51220" i_length="925">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51219" g_stop="50883" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="470" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50882" i_stop="50652" i_length="231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50651" g_stop="50485" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="638" r_length="168" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50484" i_stop="50391" i_length="94">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.836" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50390" g_stop="50362" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="667" r_length="29" r_score="0.862"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E317755" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52393" e_stop="52334"/>
          <exon e_start="52217" e_stop="52145"/>
          <exon e_start="51219" e_stop="50883"/>
          <exon e_start="50651" e_stop="50485"/>
          <exon e_start="50390" e_stop="50362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTCGTCCGTCTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAGGTATTTGAATTGTCTTTTTCAACTACATGCTTCTCCTATATTATGTGATAATATTTTCCTTATCCATGATTCCATAATCAGTTATATTTTATTTGTCTAACGTTCTTATTCTAATTAAAAAAAAACAAGTGAAACTTTCTTTTTGATAAAGGTTGCAAAGCTTTAGCTACAACCAAATTTAATAGAAGTCTTTCTCTGTTTTGTTGACTTCTATTTGTATGATCCAAACAGGAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGT-GGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGGGTATGAATTCTCTTATCATTATGTATTGTGATATTTCGGTGAAAAATGCCCAATTCCATTGGCTTACACATCTTCTTTCAACGAACTTTGACAGTTACATATTGGAAGGAAAGGAACTTGAAT</genome_strand>
        <mrna_strand>GCCGTCGTCCGTCTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAG.......................................................................................................................................................................................................................................GAGGCTGAGGCTGTANCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGGCGTCTATTGGCTGGCATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGG..............................................................................................GTACATATTGGAAGGAAAGGACTTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E452918" ref_strand="+" ref_description="SGN-E452918 [cSTS-18-G18]">
      <seq>ctaaaccctaaggacctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagaagaaggcttggaggaagaagagaaagtatgagcttggcagacagccagcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgcggaggtaatgtgaagtggcgtgctttgagattggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctattggatgtggtgtataacgcctctaacaatgaattggttaggacacaaaccctggtgaagagtgcaattattcaggttgatgcagctccatttaaacagtggtatctccagcactatggagttgaaattggtcgcaagaagaagactgctgcttccaagaaggaaggagaggaggctgaggctgtagcagaggagaagaagagtaaccatgtccaaagaaagctggaaaagaggcaacaggatcgcaagattgacccacacgttgaggagcaatttgcaagtgggcgtctattggctngcatctcatcacgacctggccagtgtggtcgtgctgatggttacatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52669" stop="50182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52369" g_stop="52334" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52333" i_stop="52218" i_length="116">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52217" g_stop="52145" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="109" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52144" i_stop="51220" i_length="925">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51219" g_stop="50883" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="443" r_length="334" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50882" i_stop="50652" i_length="231">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50651" g_stop="50485" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="610" r_length="167" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50484" i_stop="50391" i_length="94">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.836" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50390" g_stop="50383" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="618" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E452918" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52369" e_stop="52334"/>
          <exon e_start="52217" e_stop="52145"/>
          <exon e_start="51219" e_stop="50883"/>
          <exon e_start="50651" e_stop="50485"/>
          <exon e_start="50390" e_stop="50383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAGGTATTTGAATTGTCTTTTTCAACTACATGCTTCTCCTATATTATGTGATAATATTTTCCTTATCCATGATTCCATAATCAGTTATATTTTATTTGTCTAACGTTCTTATTCTAATTAAAAAAAAACAAGTGAAACTTTCTTTTTGATAAAGGTTGCAAAGCTTTAGCTACAACCAAATTTAATAGAAGTCTTTCTCTGTTTTGTTGACTTCTATTTGTATGATCCAAACAGGAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGGGTATGAATTCTCTTATCATTATGTATTGTGATATTTCGGTGAAAAATGCCCAATTCCATTGGCTTACACATCTTCTTTCAACGAACTTTGACAGTTACATAT</genome_strand>
        <mrna_strand>CTAAACCCTAAGGACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGAAGAAGGCTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCAGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGCGGAGGTAATGTGAAGTGGCGTGCTTTGAGATTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTATTGGATGTGGTGTATAACGCCTCTAACAATGAATTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGATGCAGCTCCATTTAAACAGTGGTATCTCCAGCACTATGGAGTTGAAATTGGTCGCAAGAAGAAGACTGCTG---CTTCCAAGAAGGAAGGAGAG.......................................................................................................................................................................................................................................GAGGCTGAGGCTGTAGCAGAGGAGAAGAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACACGTTGAGGAGCAATTTGCAAGTGGGCGTCTATTGGCTNGCATCTCATCACGACCTGGCCAGTGTGGTCGTGCTGATGG..............................................................................................TTACATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E557883" ref_strand="+" ref_description="SGN-E557883 [16753]">
      <seq>cttggaggaacatcgaaaccctaaggacctccgtcatcggcgacaaatgggtatcgctcgtgattctatgcacaagagacgtgccactggaggaaagaagaaggcttggaggacagaagagaaagtatgagcttggcagacagccagcaaacacaaagctggtgccaaatgctaacgactgttagcaaggataagagtccgcaggaggtaatgtgaagtggcgtgctttgaggttggatactgggaatttctcttggggtatcgaggctgttacaacggaagactcgtctgttggatgtggtatagtaacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcacggttgacgcagctccactttaaagcagtggtatctccagcactatggagttgagattggtcgcaaaaagaagactgctgcttccaagaaggaaggagaggaggctgaggctgtagcagaggagaagaagagtaaccatgtccaatagaaagctggaaaagaggcaacaggatcgcaagattgacccacatgttgaggagcaatttgctagtgggcgtctattggctgcaagtctcatcacgacctggccagtgtggtcgtgctgatggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52681" stop="50183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52381" g_stop="52334" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.854"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52333" i_stop="52218" i_length="116">
            <donor d_prob="1.000" d_score="0.85"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52217" g_stop="52145" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="124" r_length="74" r_score="0.932"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52144" i_stop="51220" i_length="925">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51219" g_stop="50883" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="466" r_length="342" r_score="0.923"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50882" i_stop="50652" i_length="231">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50651" g_stop="50485" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="635" r_length="169" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E557883" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52381" e_stop="52334"/>
          <exon e_start="52217" e_stop="52145"/>
          <exon e_start="51219" e_stop="50883"/>
          <exon e_start="50651" e_stop="50485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGA-GAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGAC-AATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGA-AGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAA-GACTGTTAG-AAGGATAAGAGTCCG-AGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAA-GGAAGACTCGTCTGTTGGATGTGGTGTA-TAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCA-GGTTGACGCAGCTCCA-TTT-AAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAGGTATTTGAATTGTCTTTTTCAACTACATGCTTCTCCTATATTATGTGATAATATTTTCCTTATCCATGATTCCATAATCAGTTATATTTTATTTGTCTAACGTTCTTATTCTAATTAAAAAAAAACAAGTGAAACTTTCTTTTTGATAAAGGTTGCAAAGCTTTAGCTACAACCAAATTTAATAGAAGTCTTTCTCTGTTTTGTTGACTTCTATTTGTATGATCCAAACAGGAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAA-AGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAA-TCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGG</genome_strand>
        <mrna_strand>CTTGGAGGAACATCGAAACCCTAAGGACCTCCGTCATCGGCGACAAATGG....................................................................................................................GTATCGCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGAAGAAGGCTTGGAGGACAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCAGCAAACACAAAGCTGGTGCCAAATGCTAACGACTGTTAGCAAGGATAAGAGTCCGCAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTATCGAGGCTGTTACAACGGAAGACTCGTCTGTTGGATGTGGTATAGTAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCACGGTTGACGCAGCTCCACTTTAAAGCAGTGGTATCTCCAGCACTATGGAGTTGAGATTGGTCGCAAAAAGAAGACTGCTG---CTTCCAAGAAGGAAGGAGAG.......................................................................................................................................................................................................................................GAGGCTGAGGCTGTAGCAGAGGAGAAGAAGAGTAACCATGTCCAATAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTTGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAAGTCTCATCACGACCTGGCCAGTGTGGTCGTGCTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E460137" ref_strand="+" ref_description="SGN-E460137 [cPRO-30-E11]">
      <seq>agaacatcgaaaccctaaggacctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagaagaaggcttggaggaagaagagaaagtatgagcttggcagacagccagcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgaggaggtaatgtgaagtggcgtgctttgaggttggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctgttggatgtggtatataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgacgcagctccatttaaacagtggtatctccagcactatggagttgagattggtcgcaaaaagaagactgctgcttccaagaaggaaggagaggacgctgaggctgtancanaggagaagaagagtaaccatgtccaaagaaagctggaaacagaggcacaggatcgcaagattgacccacatgttgagggagcatttgctagtgggcgtctattggctggcatctcatcacgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52676" stop="50209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52376" g_stop="52334" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52333" i_stop="52218" i_length="116">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52217" g_stop="52145" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="116" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52144" i_stop="51220" i_length="925">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51219" g_stop="50883" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="450" r_length="334" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50882" i_stop="50652" i_length="231">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50651" g_stop="50509" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="593" r_length="143" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E460137" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52376" e_stop="52334"/>
          <exon e_start="52217" e_stop="52145"/>
          <exon e_start="51219" e_stop="50883"/>
          <exon e_start="50651" e_stop="50509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAGGTATTTGAATTGTCTTTTTCAACTACATGCTTCTCCTATATTATGTGATAATATTTTCCTTATCCATGATTCCATAATCAGTTATATTTTATTTGTCTAACGTTCTTATTCTAATTAAAAAAAAACAAGTGAAACTTTCTTTTTGATAAAGGTTGCAAAGCTTTAGCTACAACCAAATTTAATAGAAGTCTTTCTCTGTTTTGTTGACTTCTATTTGTATGATCCAAACAGGAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAA-AGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACC</genome_strand>
        <mrna_strand>AGAACATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGAAGAAGGCTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCAGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTATATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAACAGTGGTATCTCCAGCACTATGGAGTTGAGATTGGTCGCAAAAAGAAGACTGCTG---CTTCCAAGAAGGAAGGAGAG.......................................................................................................................................................................................................................................GACGCTGAGGCTGTANCANAGGAGAAGAAGAGTAACCATGTCCAAAGAAAGCTGGAAACAGAGGC-ACAGGATCGCAAGATTGACCCACATGTTGAGGGAGCATTTGCTAGTGGGCGTCTATTGGCTGGCATCTCATCACGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E446662" ref_strand="+" ref_description="SGN-E446662 [cSTA-22-B17]">
      <seq>gtctttgagaacatcgaaaccctaaggacctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagaagaaggcttggaggaagaagagaaagtatgagcttggcagacagccagcaaacacaaagctggtgccaaatgctaagactgttagaagaataagagtccgcggaggtaatgtgaagtggcgtgctttgagattggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctattggatgtggtgtataacgcctccaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgatgcagctccatttaaacagtggtatctccagcactatggagttgaaattggtcgcaagaagaagactgctgcttccaagaaggaaggagaggaggctgaggctgtagcagaggagaagaagagtaaccatgtccaaagaaagctggaaaagaggcaacaggatcgcaagattgacccacatgttgaggagcaatttgcaagtgggcgtctattggctgcaatctcatcacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52683" stop="50212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52383" g_stop="52334" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52333" i_stop="52218" i_length="116">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52217" g_stop="52145" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="123" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52144" i_stop="51220" i_length="925">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51219" g_stop="50883" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="457" r_length="334" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50882" i_stop="50652" i_length="231">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50651" g_stop="50512" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="597" r_length="140" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E446662" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52383" e_stop="52334"/>
          <exon e_start="52217" e_stop="52145"/>
          <exon e_start="51219" e_stop="50883"/>
          <exon e_start="50651" e_stop="50512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAGGTATTTGAATTGTCTTTTTCAACTACATGCTTCTCCTATATTATGTGATAATATTTTCCTTATCCATGATTCCATAATCAGTTATATTTTATTTGTCTAACGTTCTTATTCTAATTAAAAAAAAACAAGTGAAACTTTCTTTTTGATAAAGGTTGCAAAGCTTTAGCTACAACCAAATTTAATAGAAGTCTTTCTCTGTTTTGTTGACTTCTATTTGTATGATCCAAACAGGAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCG</genome_strand>
        <mrna_strand>GTCTTTGAGAACATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGAAGAAGGCTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCAGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGAATAAGAGTCCGCGGAGGTAATGTGAAGTGGCGTGCTTTGAGATTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTATTGGATGTGGTGTATAACGCCTCCAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGATGCAGCTCCATTTAAACAGTGGTATCTCCAGCACTATGGAGTTGAAATTGGTCGCAAGAAGAAGACTGCTG---CTTCCAAGAAGGAAGGAGAG.......................................................................................................................................................................................................................................GAGGCTGAGGCTGTAGCAGAGGAGAAGAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTTGAGGAGCAATTTGCAAGTGGGCGTCTATTGGCTGCAATCTCATCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E309111" ref_strand="+" ref_description="SGN-E309111 [cLEZ-1-C19]">
      <seq>tttgagaaaatctaaaccctaaggacctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagcagaagacttggaggaagaagagaaagtatgagcttggcagacagcccgcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgaggaggtaatgtgaagtggcgtgctttgaggttggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctgttggatgtggtgtataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgacgcagctccatttaagcagtggtatctccagcactatggagttgaaatcggtcgcaagaagaagactgctgcttcttccaaaaaggaaggagaggaggctgaggctgtagcagaggagaaaaagagtaaccatgtccaaagaaagctggaaaagaggcaacaggatcgcaagattgacccacatgtcgaggagcaatttgctagtgggcgtctattggctgcaatctcatcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52680" stop="50213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52380" g_stop="52334" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52333" i_stop="52218" i_length="116">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52217" g_stop="52145" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="120" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52144" i_stop="51220" i_length="925">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51219" g_stop="50883" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="457" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50882" i_stop="50652" i_length="231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50651" g_stop="50513" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="596" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E309111" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52380" e_stop="52334"/>
          <exon e_start="52217" e_stop="52145"/>
          <exon e_start="51219" e_stop="50883"/>
          <exon e_start="50651" e_stop="50513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAGGTATTTGAATTGTCTTTTTCAACTACATGCTTCTCCTATATTATGTGATAATATTTTCCTTATCCATGATTCCATAATCAGTTATATTTTATTTGTCTAACGTTCTTATTCTAATTAAAAAAAAACAAGTGAAACTTTCTTTTTGATAAAGGTTGCAAAGCTTTAGCTACAACCAAATTTAATAGAAGTCTTTCTCTGTTTTGTTGACTTCTATTTGTATGATCCAAACAGGAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGC</genome_strand>
        <mrna_strand>TTTGAGAAAATCTAAACCCTAAGGACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAG.......................................................................................................................................................................................................................................GAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E291946" ref_strand="+" ref_description="SGN-E291946 [cLET-7-A22]">
      <seq>ctttgagaaaatcgaaaccctaaggacctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagcagaagacttggaggaagaagagaaagtatgagcttggcagacagcccgcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgaggaggtaatgtgaagtggcgtgctttgaggttggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctgttggatgtggtgtataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgacgcagctccatttaagcagtggtatctccagcactatggagttgaaatcggtcgcaagaagaagactgctgcttcttnccaaaaggaaggagaggacgctgatgctgtancacaggagaaaaagagtaaccatgtccaaagaaagctggaaaagaggcaccaggatcgccagattgacccacatgtggaggagcaatttgctagtgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52681" stop="50237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52381" g_stop="52334" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52333" i_stop="52218" i_length="116">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52217" g_stop="52145" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="121" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52144" i_stop="51220" i_length="925">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51219" g_stop="50883" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="458" r_length="337" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50882" i_stop="50652" i_length="231">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50651" g_stop="50537" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="573" r_length="115" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E291946" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52381" e_stop="52334"/>
          <exon e_start="52217" e_stop="52145"/>
          <exon e_start="51219" e_stop="50883"/>
          <exon e_start="50651" e_stop="50537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAGGTATTTGAATTGTCTTTTTCAACTACATGCTTCTCCTATATTATGTGATAATATTTTCCTTATCCATGATTCCATAATCAGTTATATTTTATTTGTCTAACGTTCTTATTCTAATTAAAAAAAAACAAGTGAAACTTTCTTTTTGATAAAGGTTGCAAAGCTTTAGCTACAACCAAATTTAATAGAAGTCTTTCTCTGTTTTGTTGACTTCTATTTGTATGATCCAAACAGGAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGC</genome_strand>
        <mrna_strand>CTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTNCCAAAAGGAAGGAGAG.......................................................................................................................................................................................................................................GACGCTGATGCTGTANCACAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCACCAGGATCGCCAGATTGACCCACATGTGGAGGAGCAATTTGCTAGTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E437608" ref_strand="+" ref_description="SGN-E437608 [cSTA-4-I8]">
      <seq>ccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagaagaaggcttggaggaagaagagaaagtatgagcttggcagacagccagcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgcggaggtaatgtgaagtggcgtgctttgagattggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctattggatgtggtgtataacgcctccaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgatgcagctccatttaaacagtggtatctccagcactatggagttgaaattggtcgcaagaagaagactgctgcttcccagaaggaaggagaggaggctgaggctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52652" stop="50602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52352" g_stop="52334" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52333" i_stop="52218" i_length="116">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52217" g_stop="52145" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="92" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52144" i_stop="51220" i_length="925">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51219" g_stop="50883" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="426" r_length="334" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50882" i_stop="50652" i_length="231">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50651" g_stop="50638" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="440" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E437608" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52352" e_stop="52334"/>
          <exon e_start="52217" e_stop="52145"/>
          <exon e_start="51219" e_stop="50883"/>
          <exon e_start="50651" e_stop="50638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAGGTATTTGAATTGTCTTTTTCAACTACATGCTTCTCCTATATTATGTGATAATATTTTCCTTATCCATGATTCCATAATCAGTTATATTTTATTTGTCTAACGTTCTTATTCTAATTAAAAAAAAACAAGTGAAACTTTCTTTTTGATAAAGGTTGCAAAGCTTTAGCTACAACCAAATTTAATAGAAGTCTTTCTCTGTTTTGTTGACTTCTATTTGTATGATCCAAACAGGAGGCTGAGGCTGT</genome_strand>
        <mrna_strand>CCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGAAGAAGGCTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCAGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGCGGAGGTAATGTGAAGTGGCGTGCTTTGAGATTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTATTGGATGTGGTGTATAACGCCTCCAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGATGCAGCTCCATTTAAACAGTGGTATCTCCAGCACTATGGAGTTGAAATTGGTCGCAAGAAGAAGACTGCTGCTTC--CC-AGAAGGAAGGAGAG.......................................................................................................................................................................................................................................GAGGCTGAGGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E200202" ref_strand="+" ref_description="SGN-E200202 [cLEB-7-P18]">
      <seq>gcacgaggaaaatcgaaaccctaaggacctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagcagaagacttggaggaagaagagaaagtatgagcttggcagacagcccgcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgaggaggtaatgtgaagtggcgtgctttgaggttggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctgttggatgtggtgtataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgacgcagctccatttaagcagtggtatctccagcactatggagttgaaatcggtcgcaagaagaaaactgctgcttctttcaaaaaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52677" stop="50589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52382" g_stop="52334" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52333" i_stop="52218" i_length="116">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52217" g_stop="52145" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="122" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52144" i_stop="51220" i_length="925">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51219" g_stop="50889" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="453" r_length="331" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E200202" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52382" e_stop="52334"/>
          <exon e_start="52217" e_stop="52145"/>
          <exon e_start="51219" e_stop="50889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAA</genome_strand>
        <mrna_strand>GCACGAGGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAAACTGCTGCTTCTTTCAAAAAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E289640" ref_strand="+" ref_description="SGN-E289640 [cLET-4-N5]">
      <seq>cccgcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgaggaggtaatgtgaagtggcgtgctttgaggttggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctgttggatgtggtgtataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgacgcagctccatttaagcagtggtatctccagcactatggagttgaaatcggtcgcaagaagaagactgctgcttcttccaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="51500" stop="50593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51200" g_stop="50893" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E289640" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51200" e_stop="50893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAA</genome_strand>
        <mrna_strand>CCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E486077" ref_strand="+" ref_description="SGN-E486077 [cSTE-20-N18]">
      <seq>cgtccgtctttgagaacatcgaaaccctaaggacctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagaagaaggcttggaggaagaagagaaagtatgagcttggcagacagccagcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgcggaggtaatgtgaagtggcgtgctttgagattggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctattggatgtggtgtataacgcctccaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgatgcagctccatttaaacagtggtatctccagcactatggagtttgaattggtcgcaagaagaagactgctgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52688" stop="50603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52388" g_stop="52334" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52333" i_stop="52218" i_length="116">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52217" g_stop="52145" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="128" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52144" i_stop="51220" i_length="925">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51219" g_stop="50903" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="445" r_length="317" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E486077" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52388" e_stop="52334"/>
          <exon e_start="52217" e_stop="52145"/>
          <exon e_start="51219" e_stop="50903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCCGTCTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTT</genome_strand>
        <mrna_strand>CGTCCGTCTTTGAGAACATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGAAGAAGGCTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCAGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGCGGAGGTAATGTGAAGTGGCGTGCTTTGAGATTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTATTGGATGTGGTGTATAACGCCTCCAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGATGCAGCTCCATTTAAACAGTGGTATCTCCAGCACTATGGAGTTTGAATTGGTCGCAAGAAGAAGACTGCTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E443146" ref_strand="+" ref_description="SGN-E443146 [cSTA-36-O8]">
      <seq>ctttgagaacatcgaaaccctaaggacctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagaagaaggcttggaggaagaagagaaagtatgagcttggcagacagccagcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgcggaggtaatgtgaagtggcgtgctttgagattggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctattggatgtggtgtataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgatgcagctccatttaaacagtggtatctccagcactatggagttgaaattggtcgcaagaagaagactgctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52681" stop="50604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52381" g_stop="52334" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52333" i_stop="52218" i_length="116">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52217" g_stop="52145" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="121" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52144" i_stop="51220" i_length="925">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51219" g_stop="50904" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="437" r_length="316" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E443146" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52381" e_stop="52334"/>
          <exon e_start="52217" e_stop="52145"/>
          <exon e_start="51219" e_stop="50904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCT</genome_strand>
        <mrna_strand>CTTTGAGAACATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGAAGAAGGCTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCAGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGCGGAGGTAATGTGAAGTGGCGTGCTTTGAGATTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTATTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGATGCAGCTCCATTTAAACAGTGGTATCTCCAGCACTATGGAGTTGAAATTGGTCGCAAGAAGAAGACTGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E335585" ref_strand="+" ref_description="SGN-E335585 [cTOE-2-P16]">
      <seq>acctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagcagaagacttggaggaagaagagaaagtatgagcttggcagacagcccgcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgaggaggtaatgtgaagtggcgtgctttgaggttggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctgttggatgtggtgtataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgacgcagctccatttaagcagtggtatctccagcactatggagttgaaatcggtcgcaagaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52656" stop="50615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52356" g_stop="52334" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52333" i_stop="52218" i_length="116">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52217" g_stop="52145" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="96" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52144" i_stop="51220" i_length="925">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51219" g_stop="50915" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="401" r_length="305" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E335585" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52356" e_stop="52334"/>
          <exon e_start="52217" e_stop="52145"/>
          <exon e_start="51219" e_stop="50915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGA</genome_strand>
        <mrna_strand>ACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E438719" ref_strand="+" ref_description="SGN-E438719 [cSTA-9-I4]">
      <seq>tccgtctttgagaacatcgaaaccctaaggacctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagaagaaggcttggaggaagaagagaaagtatgagcttggcagacagccagcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgcggaggtaatgtgaagtggcgtgctttgagattggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctattggatgtggtgtataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgatgcagctccatttaaacagtggtatctccagcactatggagttgaaattggtcgcaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52686" stop="50616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52386" g_stop="52334" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52333" i_stop="52218" i_length="116">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52217" g_stop="52145" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="126" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52144" i_stop="51220" i_length="925">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51219" g_stop="50916" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="430" r_length="304" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E438719" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52386" e_stop="52334"/>
          <exon e_start="52217" e_stop="52145"/>
          <exon e_start="51219" e_stop="50916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGTCTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAG</genome_strand>
        <mrna_strand>TCCGTCTTTGAGAACATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGAAGAAGGCTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCAGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGCGGAGGTAATGTGAAGTGGCGTGCTTTGAGATTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTATTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGATGCAGCTCCATTTAAACAGTGGTATCTCCAGCACTATGGAGTTGAAATTGGTCGCAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E294977" ref_strand="+" ref_description="SGN-E294977 [cLET-17-D20]">
      <seq>aaaatcgaaaccctaaggacctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagcagaagacttggaggaagaagagaaagtatgagcttggcagacagcccgcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgaggaggtaatgtgaagtggcgtgctttgaggttggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctgttggatgtggtgtataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgacgcagctccatttaagcagtggtatctccagcactatggagttgaaatcggtcgcaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52674" stop="50616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52374" g_stop="52334" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52333" i_stop="52218" i_length="116">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52217" g_stop="52145" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="114" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52144" i_stop="51220" i_length="925">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51219" g_stop="50916" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="418" r_length="304" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E294977" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52374" e_stop="52334"/>
          <exon e_start="52217" e_stop="52145"/>
          <exon e_start="51219" e_stop="50916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAG</genome_strand>
        <mrna_strand>AAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E445866" ref_strand="+" ref_description="SGN-E445866 [cSTA-19-G21]">
      <seq>gaaaccctaaggacctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagaagaaggcttggaggaagaagagaaagtatgagcttggcagacagccagcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgcggaggtaatgtgaagtggcgtgctttgagattggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctattggatgtggtgtataacgcctccaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgatgcagctccatttaaacagtggtatctccagcactatggagttgaaattggtcgcaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52668" stop="50616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52368" g_stop="52334" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52333" i_stop="52218" i_length="116">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52217" g_stop="52145" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="108" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52144" i_stop="51220" i_length="925">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51219" g_stop="50916" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="412" r_length="304" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E445866" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52368" e_stop="52334"/>
          <exon e_start="52217" e_stop="52145"/>
          <exon e_start="51219" e_stop="50916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAG</genome_strand>
        <mrna_strand>GAAACCCTAAGGACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGAAGAAGGCTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCAGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGCGGAGGTAATGTGAAGTGGCGTGCTTTGAGATTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTATTGGATGTGGTGTATAACGCCTCCAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGATGCAGCTCCATTTAAACAGTGGTATCTCCAGCACTATGGAGTTGAAATTGGTCGCAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E324665" ref_strand="+" ref_description="SGN-E324665 [cTOC-9-L17]">
      <seq>gtctttgagaaaatcgaaaccctaaagaccggcgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagcagaagacttggaggaagaagagaaagtatgagcttggcagacagcccgcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgaggaggtaatgtgaagtggcgtgctttgaggttggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctgttggatgtggtgtataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaagttgacgcagctccatttaagcagtggtatctccagcactatggagttgaaatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52683" stop="50627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52383" g_stop="52334" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52333" i_stop="52218" i_length="116">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52217" g_stop="52145" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="123" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52144" i_stop="51220" i_length="925">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51219" g_stop="50927" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="416" r_length="293" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E324665" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52383" e_stop="52334"/>
          <exon e_start="52217" e_stop="52145"/>
          <exon e_start="51219" e_stop="50927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCG</genome_strand>
        <mrna_strand>GTCTTTGAGAAAATCGAAACCCTAAAGACCGGCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAAGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E475525" ref_strand="+" ref_description="SGN-E475525 [cSTB-40-G4]">
      <seq>cgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagaagaaggcttggaggaagaagagaaagtatgagcttggcagacagccagcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgcggaggtaatgtgaagtggcgtgctttgagattggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctattggatgtggtgtataacgcctctaacaatgaattggttaggacacaaaccctggtgaagagtgcaattattcaggttgatgcagctccatttaaacagtggtatctccagcactatggagttgaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52651" stop="50629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52351" g_stop="52334" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52333" i_stop="52218" i_length="116">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52217" g_stop="52145" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="91" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52144" i_stop="51220" i_length="925">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51219" g_stop="50928" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="383" r_length="292" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E475525" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52351" e_stop="52334"/>
          <exon e_start="52217" e_stop="52145"/>
          <exon e_start="51219" e_stop="50928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATC</genome_strand>
        <mrna_strand>CGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGAAGAAGGCTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCAGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGCGGAGGTAATGTGAAGTGGCGTGCTTTGAGATTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTATTGGATGTGGTGTATAACGCCTCTAACAATGAATTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGATGCAGCTCCATTTAAACAGTGGTATCTCCAGCACTATGGAGTTGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E338186" ref_strand="+" ref_description="SGN-E338186 [cTOE-13-F8]">
      <seq>gaaaatcgaaaccctaaggacctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagcagaagacttggaggaagaagagaaagtatgagcttggcagacagcccgcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgaggaggtaatgtgaagtggcgtgctttgaggttggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctgttggatgtggtgtataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgacgcagctccatttaagcagtggtatctccagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52675" stop="50644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52375" g_stop="52334" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52333" i_stop="52218" i_length="116">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52217" g_stop="52145" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="115" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52144" i_stop="51220" i_length="925">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51219" g_stop="50944" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="391" r_length="276" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E338186" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52375" e_stop="52334"/>
          <exon e_start="52217" e_stop="52145"/>
          <exon e_start="51219" e_stop="50944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCA</genome_strand>
        <mrna_strand>GAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E293113" ref_strand="+" ref_description="SGN-E293113 [cLET-12-D1]">
      <seq>aaaatcgaaaccctaaggacctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagcagaagacttggaggaagaagagaaagtatgagcttggcagacagcccgcaaacacaaagctggggccaaatgctaagactgctagaaggataagagtccgaggaggtaatgtgaagtggcgtgctttgagggtggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcggctgttggatgtggtgtataacgcctctaacaatgagttggttcggacacaaaccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52674" stop="50703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52374" g_stop="52334" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52333" i_stop="52218" i_length="116">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52217" g_stop="52145" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="114" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52144" i_stop="51220" i_length="925">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51219" g_stop="51003" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="331" r_length="217" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E293113" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52374" e_stop="52334"/>
          <exon e_start="52217" e_stop="52145"/>
          <exon e_start="51219" e_stop="51003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTG</genome_strand>
        <mrna_strand>AAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGGGCCAAATGCTAAGACTGCTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGGTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGGCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTCGGACACAAACCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E724313" ref_strand="+" ref_description="SGN-E724313 [FC23CH11]">
      <seq>cccatggggatcccatgatatattgtttccaagttgagagctttgttccctctattgaaaaaaatggggtttgctgcagatagtaccatttcaatggctaatatctttctaagaagctctcatcatcataagaaagatgtaaatttggggtcttgtatgagaaaggaaacatggggttttaatctttacttgccaaagctcaagtaccaatcaagaatctcattttgttgcaagaatgaatcaattgattttgaagaaagaacaagtcctaatgaggtcaagaaagagatagagcaatgctatgaattaatacacaggcttggtcgtggtgttgtgtatttaggatcttcaaggattggtcctggacatccacactacataaaaacctttgaattagggaacaagattgcaactctattagattgtacgacatggtccggggctgggccaggcttaatggatgctgccacacaaggtgctctacaagcagggaagcccgttggcgggttcaagataggtaaagaagcaggggaatggacagctacaaattttcatccatacttaccatcagagagttatcttacatgcaggtttttctccgcaaggaaacacgggctggtggatgctgttgtgagatgtagaagctctgaaaggacagctgttatcgcgcttcctggaggaattggtaccctcgacgaggtttttgagatcatggctttgattcaactcgaacgaattggctctcaacttcctgttcctttgcttctaatgaactatgattcattttataccaatttgttggagttcctcaatgattgtgagaagtggggaactgtctctaagggtgaagttgaatcattgtggaaaatttgtaccaataac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52702" stop="57039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53002" g_stop="53260" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="276" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53261" i_stop="55549" i_length="2289">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55550" g_stop="55678" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="405" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55679" i_stop="56037" i_length="359">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56038" g_stop="56222" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="590" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56223" i_stop="56447" i_length="225">
            <donor d_prob="0.667" d_score="1.00"/>
            <acceptor a_prob="0.485" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56448" g_stop="56739" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="882" r_length="292" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E724313" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53002" e_stop="53260"/>
          <exon e_start="55550" e_stop="55678"/>
          <exon e_start="56038" e_stop="56222"/>
          <exon e_start="56448" e_stop="56739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATTGTTTCCAAGTTGAGAGCTTTGTTCCCTCTATTGAAAAAAATGGGGTTTGCTGCAGATAGTACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACAAGTCCTAATGAGGTAATAGATTTTATGACCCATTTCTTGTTTTGTTGGGTAATATTAGCAGATGCTTATGCTTTGTTTTAGTCCCAATTTGTGTAGTAAAAAGTGGGTTGAAGTTTCCAACTTTGAAAATTGTCAGATGTGAAAAAGAGAAAATTCCCATTTAGTTATCTATTTAGCTGCTGCATATGCTTTGTTTTTGTCTGTTGTCATGTGATCAGGAGTTCACCGGTTCGAAGAGTAAGCCTTGGACCCTGTGCATAGCGGGAGCTTAGTGCACTGGGCGGCTCTTCCTTATATGCTTCATTTTGTCTCAGTTTGTGTAAATATAAGTAAATATTGGGTTTAGTTTTTAGCTTTGGGACTTGTCAAAAGGCAGAGAAGGAAAAAAAATCTATTTAGTTGCTGCAAAGGCTTTATTTTGTAGCAATTTGTGTAAATTTAAGTAGAAATTGGGTAAAAGTTTCAAACTTTGTAACCTGTCAAAACGAAAAGAAGAAACAAAAGGTTCTAACTTTGGATGTTCAATGTGATTTTTGGATTGATGCAAACTTGGATTTTGTTTTGAAAATTTCAAATTTTGAGGACATTATGATCTCATTTTACACAAAAAGATGCTAACTTGGGATTTTGACGTGGGAAATTTATAATTTATATATTCAAATCTCGTTCGTATTGTTGTTTGAGAACCCATGAGTTGAAGAGACTATGTGCCTGTTGTCTTGCAGAAAAGAAAGAACAAGTGAATCCTAACTGAGGTTTTCAGTACTAAGAAAGATTTATGCTGCAATGTTAGATTAGTGATTAAAGAAGCTGCTAGCAGTACAAGATTGGAGATACTCTCTACCTTCACGCTATTCGCTCACTTTGTCAAAAGGAAAAATCATACGAATTTATCTCATTTTCGGACTTATAAGAAAGAGATTTTATCTGTATCTTTGTGTAAGTACTTTAACGTGCACAGGTTGAGTGTGGAGTGGGATGATGACTTAAAAATTTCGAGTCTTCTGAGTGGTGATAGGAGTAGAAGATATCTGGAGGCCTTTGTAGTGTGGTGGCCCCTTTACTCTTATGTTGTAAAAGGGAAGTGCATATTTGAGATATCTAGATGCTTTAAGAAACTGCTTCAGTGCCAGCAAGAAACAAGCACCACTCTTGCTAGATCAAACAAGCGATTATTGTTCCTTTATTCGTAATTCCTCCCATGGACCACATTAGGATCTTATGCACCTATACCATTACTTTATGCTTAGGTTAAAAGATTTAATGATATCATCGCTAGTATTTAAATCAGCCATCAATTACAGGTAGCTTGAAAGGAATGGCATATAGGCTGGCATCGGATACTGTTAGCTAAGTACCTAGGGGGAGAAGTACATGAATGGAAGTTGTTCAAACTAGCATATTGGAAGAACCATTAGCTAAAATGACCATAGGCCTCATTGGTGTCCAGATAGAGTCCTATTTTTCTCAATTTCGAAAGTGTTTATTAAATTTATCCATCTTTTCAAGAACATGCTTCCTCTGAAATGAAGAAGGAAAACTGGAAAGAATTCAATGTGAAACACCACGATCATTTGTTTGTGGATTGGAGAAAGTATCTTCATTCTGTTTTCCCAAGTTATATTACATTGTTGATGCAGCTCACTTTGGACTAAATAACTAACAAGTGATATATCGCGACAATCAATCAGTTGTTTACGTCTAGCAGCATTCTTCCATTAGTTTACTTGCCCTTACCCATTCTATCCTCCAGAAAAAGGAAAGATTGAATAATGGCTTTTCTTCGTCTTTTCAATAAGACGAGTTCTGATTCCTTTTTACTATTTGGAAGCATTGCAAACGGTCAAGATTGTTGTTGTTTGCATCCTTTATCTTGGTTACATGATTTTCGGTTCAAAGGAATCTAGTACTCCCACCACCTTTTCTTCTTTAACGTTTGCTGATGTAAGACTAATTGACGCCTAACAGCTGAATAGCTCAGCATGGACTCAGCTTGATTAGACGTGAAGAACCTATATGAGAAGCTATGCACCATGTCTATATTTGACTGGTTAGTGGTGGAAGCTTGAGAATCACATGCTTCCAGTCAAGTGCTTCTTTAGTTTTTAGATATAGCAATCAGTCACTAAATTATGTTTGGTTACTTTCAATGACATTTACTCTGTGTGAATTGTTAAATATCTGAGTTTTTAACACACAGTTTTCTTTTAGATGCATTGCTGCTTTACTTTTATTGCATCTCGGTTACACAAGATATCTGGTTTTGAGGTTTTTGAGACTAACAATCTGTTGAAAATGCAGGTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGTGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTAGGGAACAAGGTTAGTCAACTTTCTCAAAGTTTGGGTGAAGTAATAGAAAAAGAAAGATGAAGTAGCTTGTATAAAAAAGTACTCCCTCCGTTTCGATTTTCTCTGATTTTGACTTACGCGGAGTTCTAAGAAAGTGAAAAAGGACTTTCGAATCATGTGGTCTTAAACTAAAGATATGTAGAATGTACCATGTCCTTCAATGTTTTGGTGAATATGCCTCGTGAATTAATGAGTTACCAAAAAAGAAAAGACATTCTTTTTTAGACGGTCTAAAAGGAATGTAAGACAAACAAATTAAAACGGAGGACATAATACTATTCGGAGAAGAATCTGTGACTATTGTTTTCTAAATACTACTTGTTCGGCAGATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAGGCTTAATGGATGCTGCCACACAAGGTGCTCTACAAGCAGGGAAGCCCGTTGGCGGGTTCAAGATAGGTAAAGAAGCAGGGGAATGGACAGCTACAAATTTTCATCCATACTTACCATCAGAGAGTTATCTTACATGCAGGTAAACATAGCATCAAATGCATGGTTTTTCCTATGTTCTTAGGGGCCGTTTGGTTGTAAGCTGGTAACCAAGCACCATACTTGGTGTGCCGAATTTCATACATAACAATTAAAATGCTACCAAACATGTCATTCGTTTCTTACACGAATAATTCACTTCGTGACCAGCAGTCAAAGGGAGAGTCCCCTTATAGCTTCTTGAGTTCATCAACTGTTTTGCACTCAGGTTTTTCTCCGCAAGGAAACACGGGCTGGTGGATGCTGTTGTGAGATGTAGAAGCTCTGAAAGGACAGCTGTTATCGCGCTTCCTGGAGGAATTGGTACCCTCGACGAGGTTTTTGAGATCATGGCTTTGATTCAACTCGAACGAATTGGCTCTCAACTTCCTGTTCCTTTGCTTCTAATGAACTATGATTCATTTTATACCAATTTGTTGGAGTTCCTCAATGATTGTGAGAAGTGGGGAACTGTCTCTAAGGGTGAAGTTGAATCATTGTGGAAAATTTGTACCAATAAC</genome_strand>
        <mrna_strand>ATATATTGTTTCCAAGTTGAGAGCTTTGTTCCCTCTATTGAAAAAAATGGGGTTTGCTGCAGATAGTACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACAAGTCCTAATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGTGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTAGGGAACAAG.......................................................................................................................................................................................................................................................................................................................................................................ATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAGGCTTAATGGATGCTGCCACACAAGGTGCTCTACAAGCAGGGAAGCCCGTTGGCGGGTTCAAGATAGGTAAAGAAGCAGGGGAATGGACAGCTACAAATTTTCATCCATACTTACCATCAGAGAGTTATCTTACATGCAG.................................................................................................................................................................................................................................GTTTTTCTCCGCAAGGAAACACGGGCTGGTGGATGCTGTTGTGAGATGTAGAAGCTCTGAAAGGACAGCTGTTATCGCGCTTCCTGGAGGAATTGGTACCCTCGACGAGGTTTTTGAGATCATGGCTTTGATTCAACTCGAACGAATTGGCTCTCAACTTCCTGTTCCTTTGCTTCTAATGAACTATGATTCATTTTATACCAATTTGTTGGAGTTCCTCAATGATTGTGAGAAGTGGGGAACTGTCTCTAAGGGTGAAGTTGAATCATTGTGGAAAATTTGTACCAATAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E309189" ref_strand="+" ref_description="SGN-E309189 [cLEZ-12-M5]">
      <seq>tttgttccctctattgaaaaaaatggggtttgctgcagatagtaccatttcaatggctaatatctttctaagaagctctcatcatcataagaaagatgtaaatttggggtcttgtatgagaaaggaaacatggggttttaatctttacttgccaaagctcaagtaccaatcaagaatctcattttgttgcaagaatgaatcaattgattttgaagaaagaacacgtcctaatgaggtcaagaaagagatagagcaatgctatgaattaatacacaggcttggtcgcggtgttgtgtatttaggatcttcaaggattggtcctggacatccacactacataaaaacctttgaattatggaacaagattgcaactctattagattgtacgacatggtccggggctgggccaggcttaatggatgctgccacacaaggtgctctacaagcagggaagcccgttgcgggttcaagataggtaaagaagcaggggaatggacagctaccaattttcatccatacttaccatcagagagttatcttacatgcaggtttttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52726" stop="56524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53026" g_stop="53260" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53261" i_stop="55549" i_length="2289">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55550" g_stop="55678" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="364" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55679" i_stop="56037" i_length="359">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56038" g_stop="56222" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="548" r_length="184" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56223" i_stop="56447" i_length="225">
            <donor d_prob="0.667" d_score="0.98"/>
            <acceptor a_prob="0.485" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56448" g_stop="56456" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="557" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E309189" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53026" e_stop="53260"/>
          <exon e_start="55550" e_stop="55678"/>
          <exon e_start="56038" e_stop="56222"/>
          <exon e_start="56448" e_stop="56456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTCCCTCTATTGAAAAAAATGGGGTTTGCTGCAGATAGTACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACAAGTCCTAATGAGGTAATAGATTTTATGACCCATTTCTTGTTTTGTTGGGTAATATTAGCAGATGCTTATGCTTTGTTTTAGTCCCAATTTGTGTAGTAAAAAGTGGGTTGAAGTTTCCAACTTTGAAAATTGTCAGATGTGAAAAAGAGAAAATTCCCATTTAGTTATCTATTTAGCTGCTGCATATGCTTTGTTTTTGTCTGTTGTCATGTGATCAGGAGTTCACCGGTTCGAAGAGTAAGCCTTGGACCCTGTGCATAGCGGGAGCTTAGTGCACTGGGCGGCTCTTCCTTATATGCTTCATTTTGTCTCAGTTTGTGTAAATATAAGTAAATATTGGGTTTAGTTTTTAGCTTTGGGACTTGTCAAAAGGCAGAGAAGGAAAAAAAATCTATTTAGTTGCTGCAAAGGCTTTATTTTGTAGCAATTTGTGTAAATTTAAGTAGAAATTGGGTAAAAGTTTCAAACTTTGTAACCTGTCAAAACGAAAAGAAGAAACAAAAGGTTCTAACTTTGGATGTTCAATGTGATTTTTGGATTGATGCAAACTTGGATTTTGTTTTGAAAATTTCAAATTTTGAGGACATTATGATCTCATTTTACACAAAAAGATGCTAACTTGGGATTTTGACGTGGGAAATTTATAATTTATATATTCAAATCTCGTTCGTATTGTTGTTTGAGAACCCATGAGTTGAAGAGACTATGTGCCTGTTGTCTTGCAGAAAAGAAAGAACAAGTGAATCCTAACTGAGGTTTTCAGTACTAAGAAAGATTTATGCTGCAATGTTAGATTAGTGATTAAAGAAGCTGCTAGCAGTACAAGATTGGAGATACTCTCTACCTTCACGCTATTCGCTCACTTTGTCAAAAGGAAAAATCATACGAATTTATCTCATTTTCGGACTTATAAGAAAGAGATTTTATCTGTATCTTTGTGTAAGTACTTTAACGTGCACAGGTTGAGTGTGGAGTGGGATGATGACTTAAAAATTTCGAGTCTTCTGAGTGGTGATAGGAGTAGAAGATATCTGGAGGCCTTTGTAGTGTGGTGGCCCCTTTACTCTTATGTTGTAAAAGGGAAGTGCATATTTGAGATATCTAGATGCTTTAAGAAACTGCTTCAGTGCCAGCAAGAAACAAGCACCACTCTTGCTAGATCAAACAAGCGATTATTGTTCCTTTATTCGTAATTCCTCCCATGGACCACATTAGGATCTTATGCACCTATACCATTACTTTATGCTTAGGTTAAAAGATTTAATGATATCATCGCTAGTATTTAAATCAGCCATCAATTACAGGTAGCTTGAAAGGAATGGCATATAGGCTGGCATCGGATACTGTTAGCTAAGTACCTAGGGGGAGAAGTACATGAATGGAAGTTGTTCAAACTAGCATATTGGAAGAACCATTAGCTAAAATGACCATAGGCCTCATTGGTGTCCAGATAGAGTCCTATTTTTCTCAATTTCGAAAGTGTTTATTAAATTTATCCATCTTTTCAAGAACATGCTTCCTCTGAAATGAAGAAGGAAAACTGGAAAGAATTCAATGTGAAACACCACGATCATTTGTTTGTGGATTGGAGAAAGTATCTTCATTCTGTTTTCCCAAGTTATATTACATTGTTGATGCAGCTCACTTTGGACTAAATAACTAACAAGTGATATATCGCGACAATCAATCAGTTGTTTACGTCTAGCAGCATTCTTCCATTAGTTTACTTGCCCTTACCCATTCTATCCTCCAGAAAAAGGAAAGATTGAATAATGGCTTTTCTTCGTCTTTTCAATAAGACGAGTTCTGATTCCTTTTTACTATTTGGAAGCATTGCAAACGGTCAAGATTGTTGTTGTTTGCATCCTTTATCTTGGTTACATGATTTTCGGTTCAAAGGAATCTAGTACTCCCACCACCTTTTCTTCTTTAACGTTTGCTGATGTAAGACTAATTGACGCCTAACAGCTGAATAGCTCAGCATGGACTCAGCTTGATTAGACGTGAAGAACCTATATGAGAAGCTATGCACCATGTCTATATTTGACTGGTTAGTGGTGGAAGCTTGAGAATCACATGCTTCCAGTCAAGTGCTTCTTTAGTTTTTAGATATAGCAATCAGTCACTAAATTATGTTTGGTTACTTTCAATGACATTTACTCTGTGTGAATTGTTAAATATCTGAGTTTTTAACACACAGTTTTCTTTTAGATGCATTGCTGCTTTACTTTTATTGCATCTCGGTTACACAAGATATCTGGTTTTGAGGTTTTTGAGACTAACAATCTGTTGAAAATGCAGGTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGTGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTAGGGAACAAGGTTAGTCAACTTTCTCAAAGTTTGGGTGAAGTAATAGAAAAAGAAAGATGAAGTAGCTTGTATAAAAAAGTACTCCCTCCGTTTCGATTTTCTCTGATTTTGACTTACGCGGAGTTCTAAGAAAGTGAAAAAGGACTTTCGAATCATGTGGTCTTAAACTAAAGATATGTAGAATGTACCATGTCCTTCAATGTTTTGGTGAATATGCCTCGTGAATTAATGAGTTACCAAAAAAGAAAAGACATTCTTTTTTAGACGGTCTAAAAGGAATGTAAGACAAACAAATTAAAACGGAGGACATAATACTATTCGGAGAAGAATCTGTGACTATTGTTTTCTAAATACTACTTGTTCGGCAGATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAGGCTTAATGGATGCTGCCACACAAGGTGCTCTACAAGCAGGGAAGCCCGTTGGCGGGTTCAAGATAGGTAAAGAAGCAGGGGAATGGACAGCTACAAATTTTCATCCATACTTACCATCAGAGAGTTATCTTACATGCAGGTAAACATAGCATCAAATGCATGGTTTTTCCTATGTTCTTAGGGGCCGTTTGGTTGTAAGCTGGTAACCAAGCACCATACTTGGTGTGCCGAATTTCATACATAACAATTAAAATGCTACCAAACATGTCATTCGTTTCTTACACGAATAATTCACTTCGTGACCAGCAGTCAAAGGGAGAGTCCCCTTATAGCTTCTTGAGTTCATCAACTGTTTTGCACTCAGGTTTTTCTC</genome_strand>
        <mrna_strand>TTTGTTCCCTCTATTGAAAAAAATGGGGTTTGCTGCAGATAGTACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACACGTCCTAATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGCGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTATGGAACAAG.......................................................................................................................................................................................................................................................................................................................................................................ATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAGGCTTAATGGATGCTGCCACACAAGGTGCTCTACAAGCAGGGAAGCCCGTT-GCGGGTTCAAGATAGGTAAAGAAGCAGGGGAATGGACAGCTACCAATTTTCATCCATACTTACCATCAGAGAGTTATCTTACATGCAG.................................................................................................................................................................................................................................GTTTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E731029" ref_strand="+" ref_description="SGN-E731029 [LA25DG05]">
      <seq>ctttgctgcagatagtaccatttcaatggctaatatctttctaagaagctctcatcatcataagaaagatgtaaatttggggtcttgtatgagaaaggaaacatggggttttaatctttacttgccaaagctcaagtaccaatcaagaatctcattttgttgcaagaatgaatcaattgattttgaagaaagaacaagtcctaatgaggtcaagaaagagatagagcaatgctatgaattaatacacaggcttggtcgtggtgttgtgtatttaggatcttcaaggattggtcctggacatccacactacataaaaacctttgaattagggaacaagattgcaactctattagattgtacgacatggtccggggctgggccaggcttaatggatgctgccacacaaggtgctctacaagcagggaagcccgttggcgggttcaagataggtaaagaagcaggggaatggacagctacaaattttcatccatacttaccatcagagagttatcttacatgcaggtttttctccgcaaggaaacacgggctggtggatgctgttgtgagatgtagaagctctgaaaggacagctgttatcgcgcttcctggaggaattggtaccctcgacgaggtttttgagatcatggctttgattcaactcgaacgaattggctctcaacttcctgttcctttgcttctaatgaactatgattcattttataccaatttgttggagttcctcaatgattgtgagaagtggggaactgtctctaagggtgaagttgaatcattgtggaaaatttgtaccaataactcagaagctttggattatttggctgaattttatggtctttctactatacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52754" stop="57090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53053" g_stop="53260" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53261" i_stop="55549" i_length="2289">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55550" g_stop="55678" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="337" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55679" i_stop="56037" i_length="359">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56038" g_stop="56222" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="522" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56223" i_stop="56447" i_length="225">
            <donor d_prob="0.667" d_score="1.00"/>
            <acceptor a_prob="0.485" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56448" g_stop="56790" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="865" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E731029" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53053" e_stop="53260"/>
          <exon e_start="55550" e_stop="55678"/>
          <exon e_start="56038" e_stop="56222"/>
          <exon e_start="56448" e_stop="56790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGCTGCAGATAGTACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACAAGTCCTAATGAGGTAATAGATTTTATGACCCATTTCTTGTTTTGTTGGGTAATATTAGCAGATGCTTATGCTTTGTTTTAGTCCCAATTTGTGTAGTAAAAAGTGGGTTGAAGTTTCCAACTTTGAAAATTGTCAGATGTGAAAAAGAGAAAATTCCCATTTAGTTATCTATTTAGCTGCTGCATATGCTTTGTTTTTGTCTGTTGTCATGTGATCAGGAGTTCACCGGTTCGAAGAGTAAGCCTTGGACCCTGTGCATAGCGGGAGCTTAGTGCACTGGGCGGCTCTTCCTTATATGCTTCATTTTGTCTCAGTTTGTGTAAATATAAGTAAATATTGGGTTTAGTTTTTAGCTTTGGGACTTGTCAAAAGGCAGAGAAGGAAAAAAAATCTATTTAGTTGCTGCAAAGGCTTTATTTTGTAGCAATTTGTGTAAATTTAAGTAGAAATTGGGTAAAAGTTTCAAACTTTGTAACCTGTCAAAACGAAAAGAAGAAACAAAAGGTTCTAACTTTGGATGTTCAATGTGATTTTTGGATTGATGCAAACTTGGATTTTGTTTTGAAAATTTCAAATTTTGAGGACATTATGATCTCATTTTACACAAAAAGATGCTAACTTGGGATTTTGACGTGGGAAATTTATAATTTATATATTCAAATCTCGTTCGTATTGTTGTTTGAGAACCCATGAGTTGAAGAGACTATGTGCCTGTTGTCTTGCAGAAAAGAAAGAACAAGTGAATCCTAACTGAGGTTTTCAGTACTAAGAAAGATTTATGCTGCAATGTTAGATTAGTGATTAAAGAAGCTGCTAGCAGTACAAGATTGGAGATACTCTCTACCTTCACGCTATTCGCTCACTTTGTCAAAAGGAAAAATCATACGAATTTATCTCATTTTCGGACTTATAAGAAAGAGATTTTATCTGTATCTTTGTGTAAGTACTTTAACGTGCACAGGTTGAGTGTGGAGTGGGATGATGACTTAAAAATTTCGAGTCTTCTGAGTGGTGATAGGAGTAGAAGATATCTGGAGGCCTTTGTAGTGTGGTGGCCCCTTTACTCTTATGTTGTAAAAGGGAAGTGCATATTTGAGATATCTAGATGCTTTAAGAAACTGCTTCAGTGCCAGCAAGAAACAAGCACCACTCTTGCTAGATCAAACAAGCGATTATTGTTCCTTTATTCGTAATTCCTCCCATGGACCACATTAGGATCTTATGCACCTATACCATTACTTTATGCTTAGGTTAAAAGATTTAATGATATCATCGCTAGTATTTAAATCAGCCATCAATTACAGGTAGCTTGAAAGGAATGGCATATAGGCTGGCATCGGATACTGTTAGCTAAGTACCTAGGGGGAGAAGTACATGAATGGAAGTTGTTCAAACTAGCATATTGGAAGAACCATTAGCTAAAATGACCATAGGCCTCATTGGTGTCCAGATAGAGTCCTATTTTTCTCAATTTCGAAAGTGTTTATTAAATTTATCCATCTTTTCAAGAACATGCTTCCTCTGAAATGAAGAAGGAAAACTGGAAAGAATTCAATGTGAAACACCACGATCATTTGTTTGTGGATTGGAGAAAGTATCTTCATTCTGTTTTCCCAAGTTATATTACATTGTTGATGCAGCTCACTTTGGACTAAATAACTAACAAGTGATATATCGCGACAATCAATCAGTTGTTTACGTCTAGCAGCATTCTTCCATTAGTTTACTTGCCCTTACCCATTCTATCCTCCAGAAAAAGGAAAGATTGAATAATGGCTTTTCTTCGTCTTTTCAATAAGACGAGTTCTGATTCCTTTTTACTATTTGGAAGCATTGCAAACGGTCAAGATTGTTGTTGTTTGCATCCTTTATCTTGGTTACATGATTTTCGGTTCAAAGGAATCTAGTACTCCCACCACCTTTTCTTCTTTAACGTTTGCTGATGTAAGACTAATTGACGCCTAACAGCTGAATAGCTCAGCATGGACTCAGCTTGATTAGACGTGAAGAACCTATATGAGAAGCTATGCACCATGTCTATATTTGACTGGTTAGTGGTGGAAGCTTGAGAATCACATGCTTCCAGTCAAGTGCTTCTTTAGTTTTTAGATATAGCAATCAGTCACTAAATTATGTTTGGTTACTTTCAATGACATTTACTCTGTGTGAATTGTTAAATATCTGAGTTTTTAACACACAGTTTTCTTTTAGATGCATTGCTGCTTTACTTTTATTGCATCTCGGTTACACAAGATATCTGGTTTTGAGGTTTTTGAGACTAACAATCTGTTGAAAATGCAGGTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGTGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTAGGGAACAAGGTTAGTCAACTTTCTCAAAGTTTGGGTGAAGTAATAGAAAAAGAAAGATGAAGTAGCTTGTATAAAAAAGTACTCCCTCCGTTTCGATTTTCTCTGATTTTGACTTACGCGGAGTTCTAAGAAAGTGAAAAAGGACTTTCGAATCATGTGGTCTTAAACTAAAGATATGTAGAATGTACCATGTCCTTCAATGTTTTGGTGAATATGCCTCGTGAATTAATGAGTTACCAAAAAAGAAAAGACATTCTTTTTTAGACGGTCTAAAAGGAATGTAAGACAAACAAATTAAAACGGAGGACATAATACTATTCGGAGAAGAATCTGTGACTATTGTTTTCTAAATACTACTTGTTCGGCAGATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAGGCTTAATGGATGCTGCCACACAAGGTGCTCTACAAGCAGGGAAGCCCGTTGGCGGGTTCAAGATAGGTAAAGAAGCAGGGGAATGGACAGCTACAAATTTTCATCCATACTTACCATCAGAGAGTTATCTTACATGCAGGTAAACATAGCATCAAATGCATGGTTTTTCCTATGTTCTTAGGGGCCGTTTGGTTGTAAGCTGGTAACCAAGCACCATACTTGGTGTGCCGAATTTCATACATAACAATTAAAATGCTACCAAACATGTCATTCGTTTCTTACACGAATAATTCACTTCGTGACCAGCAGTCAAAGGGAGAGTCCCCTTATAGCTTCTTGAGTTCATCAACTGTTTTGCACTCAGGTTTTTCTCCGCAAGGAAACACGGGCTGGTGGATGCTGTTGTGAGATGTAGAAGCTCTGAAAGGACAGCTGTTATCGCGCTTCCTGGAGGAATTGGTACCCTCGACGAGGTTTTTGAGATCATGGCTTTGATTCAACTCGAACGAATTGGCTCTCAACTTCCTGTTCCTTTGCTTCTAATGAACTATGATTCATTTTATACCAATTTGTTGGAGTTCCTCAATGATTGTGAGAAGTGGGGAACTGTCTCTAAGGGTGAAGTTGAATCATTGTGGAAAATTTGTACCAATAACTCAGAAGCTTTGGATTATTTGGCTGAATTTTATGGTCTTTCTACTATACAA</genome_strand>
        <mrna_strand>CTTTGCTGCAGATAGTACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACAAGTCCTAATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGTGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTAGGGAACAAG.......................................................................................................................................................................................................................................................................................................................................................................ATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAGGCTTAATGGATGCTGCCACACAAGGTGCTCTACAAGCAGGGAAGCCCGTTGGCGGGTTCAAGATAGGTAAAGAAGCAGGGGAATGGACAGCTACAAATTTTCATCCATACTTACCATCAGAGAGTTATCTTACATGCAG.................................................................................................................................................................................................................................GTTTTTCTCCGCAAGGAAACACGGGCTGGTGGATGCTGTTGTGAGATGTAGAAGCTCTGAAAGGACAGCTGTTATCGCGCTTCCTGGAGGAATTGGTACCCTCGACGAGGTTTTTGAGATCATGGCTTTGATTCAACTCGAACGAATTGGCTCTCAACTTCCTGTTCCTTTGCTTCTAATGAACTATGATTCATTTTATACCAATTTGTTGGAGTTCCTCAATGATTGTGAGAAGTGGGGAACTGTCTCTAAGGGTGAAGTTGAATCATTGTGGAAAATTTGTACCAATAACTCAGAAGCTTTGGATTATTTGGCTGAATTTTATGGTCTTTCTACTATACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E242802" ref_strand="+" ref_description="SGN-E242802 [cLED-31-J7]">
      <seq>accatttcaatggctaatatctttctaagaagctctcatcatcataagaaagatgtaaatttggggtcttgtatgagaaaggaaacatggggttttaatctttacttgccaaagctcaagtaccaatcaagaatctcattttgttgcaagaatgaatcaattgattttgaagaaagaacaagtcctaatgaggtcaagaaagagatagagcaatgctatgaattaatacacaggcttggtcgtggtgttgtgtatttaggatcttcaaggattggtcctggacatccacactacataaaaacctttgaattagggaacaagattgcaactctattagattgtacgacatggtccggggctgggccaggcttaatggatgctgccacacaaggtgctctacaagcagggaagcccgttggcgggttcaagataggtaaagaagcaggggaatggacagctacaaattttcatccatacttaccatcagagagttatcttacatgcaggtttttctccgcaaggaaacacgggctggtggatgctgttgtgagatgtagaagctctgaaaggacagctgttatcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52769" stop="56826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53069" g_stop="53260" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53261" i_stop="55549" i_length="2289">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55550" g_stop="55678" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="321" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55679" i_stop="56037" i_length="359">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56038" g_stop="56222" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="506" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56223" i_stop="56447" i_length="225">
            <donor d_prob="0.667" d_score="1.00"/>
            <acceptor a_prob="0.485" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56448" g_stop="56526" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="585" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E242802" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53069" e_stop="53260"/>
          <exon e_start="55550" e_stop="55678"/>
          <exon e_start="56038" e_stop="56222"/>
          <exon e_start="56448" e_stop="56526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACAAGTCCTAATGAGGTAATAGATTTTATGACCCATTTCTTGTTTTGTTGGGTAATATTAGCAGATGCTTATGCTTTGTTTTAGTCCCAATTTGTGTAGTAAAAAGTGGGTTGAAGTTTCCAACTTTGAAAATTGTCAGATGTGAAAAAGAGAAAATTCCCATTTAGTTATCTATTTAGCTGCTGCATATGCTTTGTTTTTGTCTGTTGTCATGTGATCAGGAGTTCACCGGTTCGAAGAGTAAGCCTTGGACCCTGTGCATAGCGGGAGCTTAGTGCACTGGGCGGCTCTTCCTTATATGCTTCATTTTGTCTCAGTTTGTGTAAATATAAGTAAATATTGGGTTTAGTTTTTAGCTTTGGGACTTGTCAAAAGGCAGAGAAGGAAAAAAAATCTATTTAGTTGCTGCAAAGGCTTTATTTTGTAGCAATTTGTGTAAATTTAAGTAGAAATTGGGTAAAAGTTTCAAACTTTGTAACCTGTCAAAACGAAAAGAAGAAACAAAAGGTTCTAACTTTGGATGTTCAATGTGATTTTTGGATTGATGCAAACTTGGATTTTGTTTTGAAAATTTCAAATTTTGAGGACATTATGATCTCATTTTACACAAAAAGATGCTAACTTGGGATTTTGACGTGGGAAATTTATAATTTATATATTCAAATCTCGTTCGTATTGTTGTTTGAGAACCCATGAGTTGAAGAGACTATGTGCCTGTTGTCTTGCAGAAAAGAAAGAACAAGTGAATCCTAACTGAGGTTTTCAGTACTAAGAAAGATTTATGCTGCAATGTTAGATTAGTGATTAAAGAAGCTGCTAGCAGTACAAGATTGGAGATACTCTCTACCTTCACGCTATTCGCTCACTTTGTCAAAAGGAAAAATCATACGAATTTATCTCATTTTCGGACTTATAAGAAAGAGATTTTATCTGTATCTTTGTGTAAGTACTTTAACGTGCACAGGTTGAGTGTGGAGTGGGATGATGACTTAAAAATTTCGAGTCTTCTGAGTGGTGATAGGAGTAGAAGATATCTGGAGGCCTTTGTAGTGTGGTGGCCCCTTTACTCTTATGTTGTAAAAGGGAAGTGCATATTTGAGATATCTAGATGCTTTAAGAAACTGCTTCAGTGCCAGCAAGAAACAAGCACCACTCTTGCTAGATCAAACAAGCGATTATTGTTCCTTTATTCGTAATTCCTCCCATGGACCACATTAGGATCTTATGCACCTATACCATTACTTTATGCTTAGGTTAAAAGATTTAATGATATCATCGCTAGTATTTAAATCAGCCATCAATTACAGGTAGCTTGAAAGGAATGGCATATAGGCTGGCATCGGATACTGTTAGCTAAGTACCTAGGGGGAGAAGTACATGAATGGAAGTTGTTCAAACTAGCATATTGGAAGAACCATTAGCTAAAATGACCATAGGCCTCATTGGTGTCCAGATAGAGTCCTATTTTTCTCAATTTCGAAAGTGTTTATTAAATTTATCCATCTTTTCAAGAACATGCTTCCTCTGAAATGAAGAAGGAAAACTGGAAAGAATTCAATGTGAAACACCACGATCATTTGTTTGTGGATTGGAGAAAGTATCTTCATTCTGTTTTCCCAAGTTATATTACATTGTTGATGCAGCTCACTTTGGACTAAATAACTAACAAGTGATATATCGCGACAATCAATCAGTTGTTTACGTCTAGCAGCATTCTTCCATTAGTTTACTTGCCCTTACCCATTCTATCCTCCAGAAAAAGGAAAGATTGAATAATGGCTTTTCTTCGTCTTTTCAATAAGACGAGTTCTGATTCCTTTTTACTATTTGGAAGCATTGCAAACGGTCAAGATTGTTGTTGTTTGCATCCTTTATCTTGGTTACATGATTTTCGGTTCAAAGGAATCTAGTACTCCCACCACCTTTTCTTCTTTAACGTTTGCTGATGTAAGACTAATTGACGCCTAACAGCTGAATAGCTCAGCATGGACTCAGCTTGATTAGACGTGAAGAACCTATATGAGAAGCTATGCACCATGTCTATATTTGACTGGTTAGTGGTGGAAGCTTGAGAATCACATGCTTCCAGTCAAGTGCTTCTTTAGTTTTTAGATATAGCAATCAGTCACTAAATTATGTTTGGTTACTTTCAATGACATTTACTCTGTGTGAATTGTTAAATATCTGAGTTTTTAACACACAGTTTTCTTTTAGATGCATTGCTGCTTTACTTTTATTGCATCTCGGTTACACAAGATATCTGGTTTTGAGGTTTTTGAGACTAACAATCTGTTGAAAATGCAGGTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGTGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTAGGGAACAAGGTTAGTCAACTTTCTCAAAGTTTGGGTGAAGTAATAGAAAAAGAAAGATGAAGTAGCTTGTATAAAAAAGTACTCCCTCCGTTTCGATTTTCTCTGATTTTGACTTACGCGGAGTTCTAAGAAAGTGAAAAAGGACTTTCGAATCATGTGGTCTTAAACTAAAGATATGTAGAATGTACCATGTCCTTCAATGTTTTGGTGAATATGCCTCGTGAATTAATGAGTTACCAAAAAAGAAAAGACATTCTTTTTTAGACGGTCTAAAAGGAATGTAAGACAAACAAATTAAAACGGAGGACATAATACTATTCGGAGAAGAATCTGTGACTATTGTTTTCTAAATACTACTTGTTCGGCAGATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAGGCTTAATGGATGCTGCCACACAAGGTGCTCTACAAGCAGGGAAGCCCGTTGGCGGGTTCAAGATAGGTAAAGAAGCAGGGGAATGGACAGCTACAAATTTTCATCCATACTTACCATCAGAGAGTTATCTTACATGCAGGTAAACATAGCATCAAATGCATGGTTTTTCCTATGTTCTTAGGGGCCGTTTGGTTGTAAGCTGGTAACCAAGCACCATACTTGGTGTGCCGAATTTCATACATAACAATTAAAATGCTACCAAACATGTCATTCGTTTCTTACACGAATAATTCACTTCGTGACCAGCAGTCAAAGGGAGAGTCCCCTTATAGCTTCTTGAGTTCATCAACTGTTTTGCACTCAGGTTTTTCTCCGCAAGGAAACACGGGCTGGTGGATGCTGTTGTGAGATGTAGAAGCTCTGAAAGGACAGCTGTTATCGCG</genome_strand>
        <mrna_strand>ACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACAAGTCCTAATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGTGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTAGGGAACAAG.......................................................................................................................................................................................................................................................................................................................................................................ATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAGGCTTAATGGATGCTGCCACACAAGGTGCTCTACAAGCAGGGAAGCCCGTTGGCGGGTTCAAGATAGGTAAAGAAGCAGGGGAATGGACAGCTACAAATTTTCATCCATACTTACCATCAGAGAGTTATCTTACATGCAG.................................................................................................................................................................................................................................GTTTTTCTCCGCAAGGAAACACGGGCTGGTGGATGCTGTTGTGAGATGTAGAAGCTCTGAAAGGACAGCTGTTATCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E228130" ref_strand="+" ref_description="SGN-E228130 [cLED-2-H14]">
      <seq>accatttcaatggctaatatctttctaagaagctctcatcatcataagaaagatgtaaatttggggtcttgtatgagaaaggaaacatggggttttaatctttacttgccaaagctcaagtaccaatcaagaatctcattttgttgcaagaatgaatcaattgattttgaagaaagaacaagtcctaatgaggtcaagaaagagatagagcaatgctatgaattaatacacaggcttggtcgtggtgttgtgtatttaggatcttcaaggattggtcctggacatccacactacataaaaacctttgaattagggaacaagattgcaactctattagattgtacgacatggtccggggctgggccaggcttaatggatgctgccacacaaggtgctctacaagcagggaagcccgttggcgggttcaagataggtaaagaagcaggggaatggacagctacaaattttcatccatacttaccatcagagagttatcttacatgcaggtttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52769" stop="56524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53069" g_stop="53260" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53261" i_stop="55549" i_length="2289">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55550" g_stop="55678" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="321" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55679" i_stop="56037" i_length="359">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56038" g_stop="56222" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="506" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56223" i_stop="56447" i_length="225">
            <donor d_prob="0.667" d_score="1.00"/>
            <acceptor a_prob="0.485" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56448" g_stop="56454" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="513" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E228130" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53069" e_stop="53260"/>
          <exon e_start="55550" e_stop="55678"/>
          <exon e_start="56038" e_stop="56222"/>
          <exon e_start="56448" e_stop="56454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACAAGTCCTAATGAGGTAATAGATTTTATGACCCATTTCTTGTTTTGTTGGGTAATATTAGCAGATGCTTATGCTTTGTTTTAGTCCCAATTTGTGTAGTAAAAAGTGGGTTGAAGTTTCCAACTTTGAAAATTGTCAGATGTGAAAAAGAGAAAATTCCCATTTAGTTATCTATTTAGCTGCTGCATATGCTTTGTTTTTGTCTGTTGTCATGTGATCAGGAGTTCACCGGTTCGAAGAGTAAGCCTTGGACCCTGTGCATAGCGGGAGCTTAGTGCACTGGGCGGCTCTTCCTTATATGCTTCATTTTGTCTCAGTTTGTGTAAATATAAGTAAATATTGGGTTTAGTTTTTAGCTTTGGGACTTGTCAAAAGGCAGAGAAGGAAAAAAAATCTATTTAGTTGCTGCAAAGGCTTTATTTTGTAGCAATTTGTGTAAATTTAAGTAGAAATTGGGTAAAAGTTTCAAACTTTGTAACCTGTCAAAACGAAAAGAAGAAACAAAAGGTTCTAACTTTGGATGTTCAATGTGATTTTTGGATTGATGCAAACTTGGATTTTGTTTTGAAAATTTCAAATTTTGAGGACATTATGATCTCATTTTACACAAAAAGATGCTAACTTGGGATTTTGACGTGGGAAATTTATAATTTATATATTCAAATCTCGTTCGTATTGTTGTTTGAGAACCCATGAGTTGAAGAGACTATGTGCCTGTTGTCTTGCAGAAAAGAAAGAACAAGTGAATCCTAACTGAGGTTTTCAGTACTAAGAAAGATTTATGCTGCAATGTTAGATTAGTGATTAAAGAAGCTGCTAGCAGTACAAGATTGGAGATACTCTCTACCTTCACGCTATTCGCTCACTTTGTCAAAAGGAAAAATCATACGAATTTATCTCATTTTCGGACTTATAAGAAAGAGATTTTATCTGTATCTTTGTGTAAGTACTTTAACGTGCACAGGTTGAGTGTGGAGTGGGATGATGACTTAAAAATTTCGAGTCTTCTGAGTGGTGATAGGAGTAGAAGATATCTGGAGGCCTTTGTAGTGTGGTGGCCCCTTTACTCTTATGTTGTAAAAGGGAAGTGCATATTTGAGATATCTAGATGCTTTAAGAAACTGCTTCAGTGCCAGCAAGAAACAAGCACCACTCTTGCTAGATCAAACAAGCGATTATTGTTCCTTTATTCGTAATTCCTCCCATGGACCACATTAGGATCTTATGCACCTATACCATTACTTTATGCTTAGGTTAAAAGATTTAATGATATCATCGCTAGTATTTAAATCAGCCATCAATTACAGGTAGCTTGAAAGGAATGGCATATAGGCTGGCATCGGATACTGTTAGCTAAGTACCTAGGGGGAGAAGTACATGAATGGAAGTTGTTCAAACTAGCATATTGGAAGAACCATTAGCTAAAATGACCATAGGCCTCATTGGTGTCCAGATAGAGTCCTATTTTTCTCAATTTCGAAAGTGTTTATTAAATTTATCCATCTTTTCAAGAACATGCTTCCTCTGAAATGAAGAAGGAAAACTGGAAAGAATTCAATGTGAAACACCACGATCATTTGTTTGTGGATTGGAGAAAGTATCTTCATTCTGTTTTCCCAAGTTATATTACATTGTTGATGCAGCTCACTTTGGACTAAATAACTAACAAGTGATATATCGCGACAATCAATCAGTTGTTTACGTCTAGCAGCATTCTTCCATTAGTTTACTTGCCCTTACCCATTCTATCCTCCAGAAAAAGGAAAGATTGAATAATGGCTTTTCTTCGTCTTTTCAATAAGACGAGTTCTGATTCCTTTTTACTATTTGGAAGCATTGCAAACGGTCAAGATTGTTGTTGTTTGCATCCTTTATCTTGGTTACATGATTTTCGGTTCAAAGGAATCTAGTACTCCCACCACCTTTTCTTCTTTAACGTTTGCTGATGTAAGACTAATTGACGCCTAACAGCTGAATAGCTCAGCATGGACTCAGCTTGATTAGACGTGAAGAACCTATATGAGAAGCTATGCACCATGTCTATATTTGACTGGTTAGTGGTGGAAGCTTGAGAATCACATGCTTCCAGTCAAGTGCTTCTTTAGTTTTTAGATATAGCAATCAGTCACTAAATTATGTTTGGTTACTTTCAATGACATTTACTCTGTGTGAATTGTTAAATATCTGAGTTTTTAACACACAGTTTTCTTTTAGATGCATTGCTGCTTTACTTTTATTGCATCTCGGTTACACAAGATATCTGGTTTTGAGGTTTTTGAGACTAACAATCTGTTGAAAATGCAGGTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGTGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTAGGGAACAAGGTTAGTCAACTTTCTCAAAGTTTGGGTGAAGTAATAGAAAAAGAAAGATGAAGTAGCTTGTATAAAAAAGTACTCCCTCCGTTTCGATTTTCTCTGATTTTGACTTACGCGGAGTTCTAAGAAAGTGAAAAAGGACTTTCGAATCATGTGGTCTTAAACTAAAGATATGTAGAATGTACCATGTCCTTCAATGTTTTGGTGAATATGCCTCGTGAATTAATGAGTTACCAAAAAAGAAAAGACATTCTTTTTTAGACGGTCTAAAAGGAATGTAAGACAAACAAATTAAAACGGAGGACATAATACTATTCGGAGAAGAATCTGTGACTATTGTTTTCTAAATACTACTTGTTCGGCAGATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAGGCTTAATGGATGCTGCCACACAAGGTGCTCTACAAGCAGGGAAGCCCGTTGGCGGGTTCAAGATAGGTAAAGAAGCAGGGGAATGGACAGCTACAAATTTTCATCCATACTTACCATCAGAGAGTTATCTTACATGCAGGTAAACATAGCATCAAATGCATGGTTTTTCCTATGTTCTTAGGGGCCGTTTGGTTGTAAGCTGGTAACCAAGCACCATACTTGGTGTGCCGAATTTCATACATAACAATTAAAATGCTACCAAACATGTCATTCGTTTCTTACACGAATAATTCACTTCGTGACCAGCAGTCAAAGGGAGAGTCCCCTTATAGCTTCTTGAGTTCATCAACTGTTTTGCACTCAGGTTTTTC</genome_strand>
        <mrna_strand>ACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACAAGTCCTAATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGTGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTAGGGAACAAG.......................................................................................................................................................................................................................................................................................................................................................................ATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAGGCTTAATGGATGCTGCCACACAAGGTGCTCTACAAGCAGGGAAGCCCGTTGGCGGGTTCAAGATAGGTAAAGAAGCAGGGGAATGGACAGCTACAAATTTTCATCCATACTTACCATCAGAGAGTTATCTTACATGCAG.................................................................................................................................................................................................................................GTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E242837" ref_strand="+" ref_description="SGN-E242837 [cLED-31-H14]">
      <seq>accatttcaatggctaatatctttctaagaagctctcatcatcataagaaagatgtaaatttggggtcttgtatgagaaaggaaacatggggttttaatctttacttgccaaagctcaagtaccaatcaagaatctcattttgttgcaagaatgaatcaattgattttgaagaaagaacaagtcctaatgaggtcaagaaagagatagagcaatgctatgaattaatacacaggcttggtcgtggtgttgtgtatttaggatcttcaaggattggtcctggacatccacactacataaaaacctttgaattagggaacaagattgcaactctattagattgtacgacatggtccggggctgggccaggcttaatggatgctgccacacaaggtgctctacaagcagggaagcccgttggcgggttcaagataggtaaagaagcaggggaatggacagctacaaattttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52769" stop="56486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53069" g_stop="53260" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53261" i_stop="55549" i_length="2289">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55550" g_stop="55678" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="321" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55679" i_stop="56037" i_length="359">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56038" g_stop="56186" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="470" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E242837" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53069" e_stop="53260"/>
          <exon e_start="55550" e_stop="55678"/>
          <exon e_start="56038" e_stop="56186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACAAGTCCTAATGAGGTAATAGATTTTATGACCCATTTCTTGTTTTGTTGGGTAATATTAGCAGATGCTTATGCTTTGTTTTAGTCCCAATTTGTGTAGTAAAAAGTGGGTTGAAGTTTCCAACTTTGAAAATTGTCAGATGTGAAAAAGAGAAAATTCCCATTTAGTTATCTATTTAGCTGCTGCATATGCTTTGTTTTTGTCTGTTGTCATGTGATCAGGAGTTCACCGGTTCGAAGAGTAAGCCTTGGACCCTGTGCATAGCGGGAGCTTAGTGCACTGGGCGGCTCTTCCTTATATGCTTCATTTTGTCTCAGTTTGTGTAAATATAAGTAAATATTGGGTTTAGTTTTTAGCTTTGGGACTTGTCAAAAGGCAGAGAAGGAAAAAAAATCTATTTAGTTGCTGCAAAGGCTTTATTTTGTAGCAATTTGTGTAAATTTAAGTAGAAATTGGGTAAAAGTTTCAAACTTTGTAACCTGTCAAAACGAAAAGAAGAAACAAAAGGTTCTAACTTTGGATGTTCAATGTGATTTTTGGATTGATGCAAACTTGGATTTTGTTTTGAAAATTTCAAATTTTGAGGACATTATGATCTCATTTTACACAAAAAGATGCTAACTTGGGATTTTGACGTGGGAAATTTATAATTTATATATTCAAATCTCGTTCGTATTGTTGTTTGAGAACCCATGAGTTGAAGAGACTATGTGCCTGTTGTCTTGCAGAAAAGAAAGAACAAGTGAATCCTAACTGAGGTTTTCAGTACTAAGAAAGATTTATGCTGCAATGTTAGATTAGTGATTAAAGAAGCTGCTAGCAGTACAAGATTGGAGATACTCTCTACCTTCACGCTATTCGCTCACTTTGTCAAAAGGAAAAATCATACGAATTTATCTCATTTTCGGACTTATAAGAAAGAGATTTTATCTGTATCTTTGTGTAAGTACTTTAACGTGCACAGGTTGAGTGTGGAGTGGGATGATGACTTAAAAATTTCGAGTCTTCTGAGTGGTGATAGGAGTAGAAGATATCTGGAGGCCTTTGTAGTGTGGTGGCCCCTTTACTCTTATGTTGTAAAAGGGAAGTGCATATTTGAGATATCTAGATGCTTTAAGAAACTGCTTCAGTGCCAGCAAGAAACAAGCACCACTCTTGCTAGATCAAACAAGCGATTATTGTTCCTTTATTCGTAATTCCTCCCATGGACCACATTAGGATCTTATGCACCTATACCATTACTTTATGCTTAGGTTAAAAGATTTAATGATATCATCGCTAGTATTTAAATCAGCCATCAATTACAGGTAGCTTGAAAGGAATGGCATATAGGCTGGCATCGGATACTGTTAGCTAAGTACCTAGGGGGAGAAGTACATGAATGGAAGTTGTTCAAACTAGCATATTGGAAGAACCATTAGCTAAAATGACCATAGGCCTCATTGGTGTCCAGATAGAGTCCTATTTTTCTCAATTTCGAAAGTGTTTATTAAATTTATCCATCTTTTCAAGAACATGCTTCCTCTGAAATGAAGAAGGAAAACTGGAAAGAATTCAATGTGAAACACCACGATCATTTGTTTGTGGATTGGAGAAAGTATCTTCATTCTGTTTTCCCAAGTTATATTACATTGTTGATGCAGCTCACTTTGGACTAAATAACTAACAAGTGATATATCGCGACAATCAATCAGTTGTTTACGTCTAGCAGCATTCTTCCATTAGTTTACTTGCCCTTACCCATTCTATCCTCCAGAAAAAGGAAAGATTGAATAATGGCTTTTCTTCGTCTTTTCAATAAGACGAGTTCTGATTCCTTTTTACTATTTGGAAGCATTGCAAACGGTCAAGATTGTTGTTGTTTGCATCCTTTATCTTGGTTACATGATTTTCGGTTCAAAGGAATCTAGTACTCCCACCACCTTTTCTTCTTTAACGTTTGCTGATGTAAGACTAATTGACGCCTAACAGCTGAATAGCTCAGCATGGACTCAGCTTGATTAGACGTGAAGAACCTATATGAGAAGCTATGCACCATGTCTATATTTGACTGGTTAGTGGTGGAAGCTTGAGAATCACATGCTTCCAGTCAAGTGCTTCTTTAGTTTTTAGATATAGCAATCAGTCACTAAATTATGTTTGGTTACTTTCAATGACATTTACTCTGTGTGAATTGTTAAATATCTGAGTTTTTAACACACAGTTTTCTTTTAGATGCATTGCTGCTTTACTTTTATTGCATCTCGGTTACACAAGATATCTGGTTTTGAGGTTTTTGAGACTAACAATCTGTTGAAAATGCAGGTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGTGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTAGGGAACAAGGTTAGTCAACTTTCTCAAAGTTTGGGTGAAGTAATAGAAAAAGAAAGATGAAGTAGCTTGTATAAAAAAGTACTCCCTCCGTTTCGATTTTCTCTGATTTTGACTTACGCGGAGTTCTAAGAAAGTGAAAAAGGACTTTCGAATCATGTGGTCTTAAACTAAAGATATGTAGAATGTACCATGTCCTTCAATGTTTTGGTGAATATGCCTCGTGAATTAATGAGTTACCAAAAAAGAAAAGACATTCTTTTTTAGACGGTCTAAAAGGAATGTAAGACAAACAAATTAAAACGGAGGACATAATACTATTCGGAGAAGAATCTGTGACTATTGTTTTCTAAATACTACTTGTTCGGCAGATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAGGCTTAATGGATGCTGCCACACAAGGTGCTCTACAAGCAGGGAAGCCCGTTGGCGGGTTCAAGATAGGTAAAGAAGCAGGGGAATGGACAGCTACAAATTTTCA</genome_strand>
        <mrna_strand>ACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACAAGTCCTAATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGTGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTAGGGAACAAG.......................................................................................................................................................................................................................................................................................................................................................................ATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAGGCTTAATGGATGCTGCCACACAAGGTGCTCTACAAGCAGGGAAGCCCGTTGGCGGGTTCAAGATAGGTAAAGAAGCAGGGGAATGGACAGCTACAAATTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E236628" ref_strand="+" ref_description="SGN-E236628 [cLED-13-D24]">
      <seq>accatttcaatggctaatatctttctaagaagctctcatcatcataagaaagatgtaaatttggggtcttgtatgagaaaggaaacatggggttttaatctttacttgccaaagctcaagtaccaatcaagaatctcattttgttgcaagaatgaatcaattgattttgaagaaagaacaagtcctaatgaggtcaagaaagagatagagcaatgctatgaattaatacacaggcttggtcgtggtgttgtgtatttaggatcttcaaggattggtcctggacatccacactacataaaaacctttgaattatggaacaagattgcaactctattagattgtacgacatggtccggggctgggccaagcttaatggatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52769" stop="56396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53069" g_stop="53260" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53261" i_stop="55549" i_length="2289">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55550" g_stop="55678" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="321" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55679" i_stop="56037" i_length="359">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.925" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56038" g_stop="56096" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="380" r_length="59" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E236628" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53069" e_stop="53260"/>
          <exon e_start="55550" e_stop="55678"/>
          <exon e_start="56038" e_stop="56096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACAAGTCCTAATGAGGTAATAGATTTTATGACCCATTTCTTGTTTTGTTGGGTAATATTAGCAGATGCTTATGCTTTGTTTTAGTCCCAATTTGTGTAGTAAAAAGTGGGTTGAAGTTTCCAACTTTGAAAATTGTCAGATGTGAAAAAGAGAAAATTCCCATTTAGTTATCTATTTAGCTGCTGCATATGCTTTGTTTTTGTCTGTTGTCATGTGATCAGGAGTTCACCGGTTCGAAGAGTAAGCCTTGGACCCTGTGCATAGCGGGAGCTTAGTGCACTGGGCGGCTCTTCCTTATATGCTTCATTTTGTCTCAGTTTGTGTAAATATAAGTAAATATTGGGTTTAGTTTTTAGCTTTGGGACTTGTCAAAAGGCAGAGAAGGAAAAAAAATCTATTTAGTTGCTGCAAAGGCTTTATTTTGTAGCAATTTGTGTAAATTTAAGTAGAAATTGGGTAAAAGTTTCAAACTTTGTAACCTGTCAAAACGAAAAGAAGAAACAAAAGGTTCTAACTTTGGATGTTCAATGTGATTTTTGGATTGATGCAAACTTGGATTTTGTTTTGAAAATTTCAAATTTTGAGGACATTATGATCTCATTTTACACAAAAAGATGCTAACTTGGGATTTTGACGTGGGAAATTTATAATTTATATATTCAAATCTCGTTCGTATTGTTGTTTGAGAACCCATGAGTTGAAGAGACTATGTGCCTGTTGTCTTGCAGAAAAGAAAGAACAAGTGAATCCTAACTGAGGTTTTCAGTACTAAGAAAGATTTATGCTGCAATGTTAGATTAGTGATTAAAGAAGCTGCTAGCAGTACAAGATTGGAGATACTCTCTACCTTCACGCTATTCGCTCACTTTGTCAAAAGGAAAAATCATACGAATTTATCTCATTTTCGGACTTATAAGAAAGAGATTTTATCTGTATCTTTGTGTAAGTACTTTAACGTGCACAGGTTGAGTGTGGAGTGGGATGATGACTTAAAAATTTCGAGTCTTCTGAGTGGTGATAGGAGTAGAAGATATCTGGAGGCCTTTGTAGTGTGGTGGCCCCTTTACTCTTATGTTGTAAAAGGGAAGTGCATATTTGAGATATCTAGATGCTTTAAGAAACTGCTTCAGTGCCAGCAAGAAACAAGCACCACTCTTGCTAGATCAAACAAGCGATTATTGTTCCTTTATTCGTAATTCCTCCCATGGACCACATTAGGATCTTATGCACCTATACCATTACTTTATGCTTAGGTTAAAAGATTTAATGATATCATCGCTAGTATTTAAATCAGCCATCAATTACAGGTAGCTTGAAAGGAATGGCATATAGGCTGGCATCGGATACTGTTAGCTAAGTACCTAGGGGGAGAAGTACATGAATGGAAGTTGTTCAAACTAGCATATTGGAAGAACCATTAGCTAAAATGACCATAGGCCTCATTGGTGTCCAGATAGAGTCCTATTTTTCTCAATTTCGAAAGTGTTTATTAAATTTATCCATCTTTTCAAGAACATGCTTCCTCTGAAATGAAGAAGGAAAACTGGAAAGAATTCAATGTGAAACACCACGATCATTTGTTTGTGGATTGGAGAAAGTATCTTCATTCTGTTTTCCCAAGTTATATTACATTGTTGATGCAGCTCACTTTGGACTAAATAACTAACAAGTGATATATCGCGACAATCAATCAGTTGTTTACGTCTAGCAGCATTCTTCCATTAGTTTACTTGCCCTTACCCATTCTATCCTCCAGAAAAAGGAAAGATTGAATAATGGCTTTTCTTCGTCTTTTCAATAAGACGAGTTCTGATTCCTTTTTACTATTTGGAAGCATTGCAAACGGTCAAGATTGTTGTTGTTTGCATCCTTTATCTTGGTTACATGATTTTCGGTTCAAAGGAATCTAGTACTCCCACCACCTTTTCTTCTTTAACGTTTGCTGATGTAAGACTAATTGACGCCTAACAGCTGAATAGCTCAGCATGGACTCAGCTTGATTAGACGTGAAGAACCTATATGAGAAGCTATGCACCATGTCTATATTTGACTGGTTAGTGGTGGAAGCTTGAGAATCACATGCTTCCAGTCAAGTGCTTCTTTAGTTTTTAGATATAGCAATCAGTCACTAAATTATGTTTGGTTACTTTCAATGACATTTACTCTGTGTGAATTGTTAAATATCTGAGTTTTTAACACACAGTTTTCTTTTAGATGCATTGCTGCTTTACTTTTATTGCATCTCGGTTACACAAGATATCTGGTTTTGAGGTTTTTGAGACTAACAATCTGTTGAAAATGCAGGTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGTGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTAGGGAACAAGGTTAGTCAACTTTCTCAAAGTTTGGGTGAAGTAATAGAAAAAGAAAGATGAAGTAGCTTGTATAAAAAAGTACTCCCTCCGTTTCGATTTTCTCTGATTTTGACTTACGCGGAGTTCTAAGAAAGTGAAAAAGGACTTTCGAATCATGTGGTCTTAAACTAAAGATATGTAGAATGTACCATGTCCTTCAATGTTTTGGTGAATATGCCTCGTGAATTAATGAGTTACCAAAAAAGAAAAGACATTCTTTTTTAGACGGTCTAAAAGGAATGTAAGACAAACAAATTAAAACGGAGGACATAATACTATTCGGAGAAGAATCTGTGACTATTGTTTTCTAAATACTACTTGTTCGGCAGATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAGGCTTAATGGATGC</genome_strand>
        <mrna_strand>ACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACAAGTCCTAATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGTGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTATGGAACAAG.......................................................................................................................................................................................................................................................................................................................................................................ATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAAGCTTAATGGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E688064" ref_strand="+" ref_description="SGN-E688064 [T3_tus_85_G20]">
      <seq>tagctcttacatctcacatgaatgtcaacagtagacagcaatttggtgtgcttgctcctttatctctacctctaccaaatgagctcaaggaatccttttcattcttctgccagtcccttaaaaatcgtcgacatggctcccgttagatagtgaagaaatgcaaaaaaaatgtcgttttcaaccatttggcactattatcaagttttgtaaattgtaatcgacttacctttatcctgctttaagagtgataattcttgctgtgtctcttttattaatacaaaacaattttgcaagggactataattttctccttgaaggttcatatccattttcatggtgaattgtttcttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="63430" stop="62481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63130" g_stop="62780" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="353" polyA_stop="367"/>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E688064" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63130" e_stop="62780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTCTTACATCTCACATGAATGTCAACAGTAGACAGCAATTTGGTGTGCTTGCTCCTTTATCTCTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTGCCAGTCCCTTAAAAATCGTCGACATGGCTCCCGTTAGATAGTGAAGAAATGC-AAAAAAATGTCGTTTTCAACCATTTGGCACTATTATCAAGTTTTGTAAATTGTAATCGACTTACCTTTATCCTGCTTTAAGAGTGATAATTCTTGCTGTGTCTCTTTTATTAATACAAAACAATTTTGCAAGGGACTATAATTTTCTCCTTGAAGGTTCATATCCATTTTCATGGTGAATTGTTTCTTAG</genome_strand>
        <mrna_strand>TAGCTCTTACATCTCACATGAATGTCAACAGTAGACAGCAATTTGGTGTGCTTGCTCCTTTATCTCTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTGCCAGTCCCTTAAAAATCGTCGACATGGCTCCCGTTAGATAGTGAAGAAATGCAAAAAAAATGTCGTTTTCAACCATTTGGCACTATTATCAAGTTTTGTAAATTGTAATCGACTTACCTTTATCCTGCTTTAAGAGTGATAATTCTTGCTGTGTCTCTTTTATTAATACAAAACAATTTTGCAAGGGACTATAATTTTCTCCTTGAAGGTTCATATCCATTTTCATGGTGAATTGTTTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E335521" ref_strand="+" ref_description="SGN-E335521 [cTOE-2-O6]">
      <seq>agctcttacatctcacatgaatgtcaacagtagacagcaatttggtgtgcttgctcctttatctctacctctaccaaatgagctcaaggaatccttttcattcttctgccagtcccttaaaaatcgtcgacatggctcccgttagatagtgaagaaatgcaaaaaaaatgtcgttttcaaccatttggcactattatcaagttttgtaaattgtaatcgacttacctttatcctgctttaagagagataattcttgctgtgtctcttttattaatacaaaacaattttgcaagggactataattttctccttgaaggttcatatccattttcatggtgaaattgttcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="63429" stop="62481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63129" g_stop="62780" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="352" polyA_stop="367"/>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E335521" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63129" e_stop="62780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCTTACATCTCACATGAATGTCAACAGTAGACAGCAATTTGGTGTGCTTGCTCCTTTATCTCTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTGCCAGTCCCTTAAAAATCGTCGACATGGCTCCCGTTAGATAGTGAAGAAATGC-AAAAAAATGTCGTTTTCAACCATTTGGCACTATTATCAAGTTTTGTAAATTGTAATCGACTTACCTTTATCCTGCTTTAAGAGTGATAATTCTTGCTGTGTCTCTTTTATTAATACAAAACAATTTTGCAAGGGACTATAATTTTCTCCTTGAAGGTTCATATCCATTTTCATGGTGAATTGTTTCTTAG</genome_strand>
        <mrna_strand>AGCTCTTACATCTCACATGAATGTCAACAGTAGACAGCAATTTGGTGTGCTTGCTCCTTTATCTCTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTGCCAGTCCCTTAAAAATCGTCGACATGGCTCCCGTTAGATAGTGAAGAAATGCAAAAAAAATGTCGTTTTCAACCATTTGGCACTATTATCAAGTTTTGTAAATTGTAATCGACTTACCTTTATCCTGCTTTAAGAGAGATAATTCTTGCTGTGTCTCTTTTATTAATACAAAACAATTTTGCAAGGGACTATAATTTTCTCCTTGAAGGTTCATATCCATTTTCATGGTGAAATTGTTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E436186" ref_strand="-" ref_description="SGN-E436186 [STM-62-L13]">
      <seq>tccattttcggatacggctcaggattgataaagaaaaaaggctttaaaggatcctttggggaagcaggagcttcggcaaagacttttgcagttttatctggagttcatagtttagttgtctgcttcttgaagagattacggggaaaagatgatgttatcaatgctggagtagctggatgttgcactggtcttgccctaagttttccaggtgcacctcaggccctattacagagttgtctcacctttggggcattttcgttcatcatcgaaggtcttaacaagcagcaacctgcattagctcttacatctcacatgaatgtcaatagtaggcagcaatttggtgtgcttgctcctttatcactacctctaccaaatgagctcaaggaatccttttcattcttctgccagtcccttaaaaatcgtcgacatggctccggttagataatgaagaaatgcaacaaaatgtggttttcaaccttttggacgattatcaagttttgtaaattgtaatcgacttacttttatcccgctttaagagtgatgattcttgctgtgtctcttttattaaatacaaaacaattttgctagggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="65027" stop="62529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64710" g_stop="64646" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="81" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64645" i_stop="64520" i_length="126">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64519" g_stop="64447" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="154" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64446" i_stop="64374" i_length="73">
            <donor d_prob="0.358" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64373" g_stop="64320" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="208" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64319" i_stop="63218" i_length="1102">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63217" g_stop="62825" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="601" r_length="393" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E436186" ref_strand="-">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436186" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="64710" e_stop="64646"/>
          <exon e_start="64519" e_stop="64447"/>
          <exon e_start="64373" e_stop="64320"/>
          <exon e_start="63217" e_stop="62825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAGGTATTTCAATCTTTGATCAATGCCTTAATGATATTTTTGGCAAACTACAGTATAACCACTGTTACTGCTTCCCTCTTTTAATATGTCTAATTGTGACTTGGTTCATTTCCCCTTTCTGTTGTCTAGACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATGGTATGACACACACTTTGAACAGCCAGATTCGGAAACATCTTTTATTTTCATTGACTTTCTCTTCTTTCTACAGTTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAGGTACTTCCAACATTTCCCACTTCATAACATAATTATCAGGACTATACCCTCCATTTTTGATTCTCAATTCCTTGAAGTCTTCTTAATTGCCATCTTACGCATTGATTAAAATGATGTTAGTACCCAATCAAGTGTAGATAGAAACAAGTACTGTCATGGTTACACATGTTTGCTGTGTTAGTGTGCCCCTTCAAACCTGAATAAAGCCATGAAGTCTAATTGTATTCATTTGATAATTGTGCAAATGGTGTAAACTTCTGTGATTATTATCGTTAGCTTAGTGTCTTCTCTAACTATCATTGTCAGTCCCAAACCTACAGTCCTTCTTTGCGGCAATATCTGAATTGGTTGGGAGAAAGTAGCATACGACTTACATGACAAATTTAAGGAGGTTTTCAGGTAGTTGTGTGGTGGTTATGGGGCATGTCATGGAAAAATTGTGCTTAACTCATTTTTTAAGAGCACAATTTAGCCTGCTAGAGCTAATAAGACCTACACTTGATGCATAAATGGAGAATTTTTAGGGCTGCAAATAATAGCTTCGGATTCTGGTTAAATAAGGTGGGAATCTGGGAGATATAAAGATGTTACCAGTCTCACCCCCATAATGAATTGGAAAAATGTGTTCGGATTAAGAGAATATGAAAGCAAGGATGTGAAAAAGTAAAGATGAGCAGGAAGGGGTGGGTGTTACAACTGTGTCTTTCCAACATGTAGATTTTTTCCAGCATGTCATTATCGTACCCATGACTAAACTCAAAAAGCAAATAGCTAGATTGGGTGATATTCATGTATTTCAACAATGTCGTGAAGTGCATATAAGTTTCAGTTATGAATTTAAATTCTCCTTATCTGCTTTATAGAAGCATCTTTCTTTGTTTTCTTTGAGTTCTTGCTTCTTGTTAAATTATATGCAAGTTCATGAAGTGCTGCTCATAGTAAGGTTTCTAATTTTCTATATTCGAAATTCTTAACCTCATTCTCGTTTAACTTGTCTAGTCATTTTTCTCTCCTCATTCAATTGATTGCGCTAGAATGTTTGTCATTCCTTATAGTGAACTAGAGTTATAATTAGTCTTTCTTTGTTGATGATGCGTCTCAGGTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAACAGTAGACAGCAATTTGGTGTGCTTGCTCCTTTATCTCTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTGCCAGTCCCTTAAAAATCGTCGACATGGCTCCCGTTAGATAGTGAAGAAATGCAAAAAAATGTCGTTTTCAACCATTTGGCACTATTATCAAGTTTTGTAAATTGTAATCGACTTACCTTTATCCTGCTTTAAGAGTGATAATTCTTGCTGTGTCTCTTTTATT-AATACAAAACAATTTTGCAAGGGACTATAATTTT</genome_strand>
        <mrna_strand>GCTCAGGATTGATAAAGAAAAAAGGCTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAG..............................................................................................................................ACTTTTGCAGTTTTATCTGGAGTTCATAGTTTAGTTGTCTGCTTCTTGAAGAGATTACGGGGAAAAGATGATG.........................................................................TTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTCAGGCCCTATTACAGAGTTGTCTCACCTTTGGGGCATTTTCGTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAATAGTAGGCAGCAATTTGGTGTGCTTGCTCCTTTATCACTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTGCCAGTCCCTTAAAAATCGTCGACATGGCTCCGGTTAGATAATGAAGAAATGCAACAAAATGTGGTTTTCAACCTTTTGG-ACGATTATCAAGTTTTGTAAATTGTAATCGACTTACTTTTATCCCGCTTTAAGAGTGATGATTCTTGCTGTGTCTCTTTTATTAAATACAAAACAATTTTGCTAGGGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E356877" ref_strand="+" ref_description="SGN-E356877 [cTOS-22-E14]">
      <seq>tcaggattaataaagaagaaaggttttaaaggatcctttggggaagcaggagcttcggcaaagacttttgcagttttatcaggagttcatagtttagttgtctgtttcttgaagagaatacggggaaaagatgatgttatcaatgctggagtagctggatgttgcactggtcttgccctaagttttccaggtgcacctcaggctctactacagagttgtctcacctttggggcattttctttcatcatcgaaggtcttaacaagcagcaacctgcattagctcttacatctcacatgaatgtcaacagtagacagcaatttggtgtgcttgctcctttatctctacctctaccaaatgagctcaaggaatccttttcattcttctgccagtcccttaaaaatcgtcgacatggctcccgttagatagtgaagaaatgcaaaaaaatgtcgttttcaaccatttggcactattatcaagttttgtaaattgtaatcgacttacctttatcctgctttaagagtgataattcttgctgtgtctcttttattaatacaaaacaattttgcaagggaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="65008" stop="62535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64708" g_stop="64646" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64645" i_stop="64520" i_length="126">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64519" g_stop="64447" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="136" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64446" i_stop="64374" i_length="73">
            <donor d_prob="0.358" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64373" g_stop="64320" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="190" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64319" i_stop="63218" i_length="1102">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63217" g_stop="62831" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="577" r_length="387" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E356877" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64708" e_stop="64646"/>
          <exon e_start="64519" e_stop="64447"/>
          <exon e_start="64373" e_stop="64320"/>
          <exon e_start="63217" e_stop="62831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAGGTATTTCAATCTTTGATCAATGCCTTAATGATATTTTTGGCAAACTACAGTATAACCACTGTTACTGCTTCCCTCTTTTAATATGTCTAATTGTGACTTGGTTCATTTCCCCTTTCTGTTGTCTAGACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATGGTATGACACACACTTTGAACAGCCAGATTCGGAAACATCTTTTATTTTCATTGACTTTCTCTTCTTTCTACAGTTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAGGTACTTCCAACATTTCCCACTTCATAACATAATTATCAGGACTATACCCTCCATTTTTGATTCTCAATTCCTTGAAGTCTTCTTAATTGCCATCTTACGCATTGATTAAAATGATGTTAGTACCCAATCAAGTGTAGATAGAAACAAGTACTGTCATGGTTACACATGTTTGCTGTGTTAGTGTGCCCCTTCAAACCTGAATAAAGCCATGAAGTCTAATTGTATTCATTTGATAATTGTGCAAATGGTGTAAACTTCTGTGATTATTATCGTTAGCTTAGTGTCTTCTCTAACTATCATTGTCAGTCCCAAACCTACAGTCCTTCTTTGCGGCAATATCTGAATTGGTTGGGAGAAAGTAGCATACGACTTACATGACAAATTTAAGGAGGTTTTCAGGTAGTTGTGTGGTGGTTATGGGGCATGTCATGGAAAAATTGTGCTTAACTCATTTTTTAAGAGCACAATTTAGCCTGCTAGAGCTAATAAGACCTACACTTGATGCATAAATGGAGAATTTTTAGGGCTGCAAATAATAGCTTCGGATTCTGGTTAAATAAGGTGGGAATCTGGGAGATATAAAGATGTTACCAGTCTCACCCCCATAATGAATTGGAAAAATGTGTTCGGATTAAGAGAATATGAAAGCAAGGATGTGAAAAAGTAAAGATGAGCAGGAAGGGGTGGGTGTTACAACTGTGTCTTTCCAACATGTAGATTTTTTCCAGCATGTCATTATCGTACCCATGACTAAACTCAAAAAGCAAATAGCTAGATTGGGTGATATTCATGTATTTCAACAATGTCGTGAAGTGCATATAAGTTTCAGTTATGAATTTAAATTCTCCTTATCTGCTTTATAGAAGCATCTTTCTTTGTTTTCTTTGAGTTCTTGCTTCTTGTTAAATTATATGCAAGTTCATGAAGTGCTGCTCATAGTAAGGTTTCTAATTTTCTATATTCGAAATTCTTAACCTCATTCTCGTTTAACTTGTCTAGTCATTTTTCTCTCCTCATTCAATTGATTGCGCTAGAATGTTTGTCATTCCTTATAGTGAACTAGAGTTATAATTAGTCTTTCTTTGTTGATGATGCGTCTCAGGTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAACAGTAGACAGCAATTTGGTGTGCTTGCTCCTTTATCTCTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTGCCAGTCCCTTAAAAATCGTCGACATGGCTCCCGTTAGATAGTGAAGAAATGCAAAAAAATGTCGTTTTCAACCATTTGGCACTATTATCAAGTTTTGTAAATTGTAATCGACTTACCTTTATCCTGCTTTAAGAGTGATAATTCTTGCTGTGTCTCTTTTATTAATACAAAACAATTTTGCAAGGGACTAT</genome_strand>
        <mrna_strand>TCAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAG..............................................................................................................................ACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATG.........................................................................TTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAACAGTAGACAGCAATTTGGTGTGCTTGCTCCTTTATCTCTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTGCCAGTCCCTTAAAAATCGTCGACATGGCTCCCGTTAGATAGTGAAGAAATGCAAAAAAATGTCGTTTTCAACCATTTGGCACTATTATCAAGTTTTGTAAATTGTAATCGACTTACCTTTATCCTGCTTTAAGAGTGATAATTCTTGCTGTGTCTCTTTTATTAATACAAAACAATTTTGCAAGGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E351201" ref_strand="+" ref_description="SGN-E351201 [cTOS-6-E20]">
      <seq>caggattaataaagaagaaaggttttaaaggatcctttggggaagcaggagcttcggcaaagacttttgcagttttatcaggagttcatagtttagttgtctgtttcttgaagagaatacggggaaaagatgatgttatcaatgctggagtagctggatgttgcactggtcttgccctaagttttccaggtgcacctcaggctctactacagagttgtctcacctttggggcattttctttcatcatcgaaggtcttaacaagcagcaacctgcattagctcttacatctcacatgaatgtcaacagtagacagcaatttggtgtgcttgctcctttatctctacctctaccaaatgagctcaaggaatccttttcattcttctgccagtcccttaaaaatcgtcgacatggctcccgttagatagtgaagaaatgcaaaaaaatgtcgttttcaaccatttggcactattatcaagttttgtaaattgtaatcgacttacctttatcctgctttaagagtgataattcttgctgtgtctcttttattaatacaaaacaattttgcaaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="65007" stop="62535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64707" g_stop="64646" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64645" i_stop="64520" i_length="126">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64519" g_stop="64447" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="135" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64446" i_stop="64374" i_length="73">
            <donor d_prob="0.358" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64373" g_stop="64320" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="189" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64319" i_stop="63218" i_length="1102">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63217" g_stop="62835" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="572" r_length="383" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E351201" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64707" e_stop="64646"/>
          <exon e_start="64519" e_stop="64447"/>
          <exon e_start="64373" e_stop="64320"/>
          <exon e_start="63217" e_stop="62835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAGGTATTTCAATCTTTGATCAATGCCTTAATGATATTTTTGGCAAACTACAGTATAACCACTGTTACTGCTTCCCTCTTTTAATATGTCTAATTGTGACTTGGTTCATTTCCCCTTTCTGTTGTCTAGACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATGGTATGACACACACTTTGAACAGCCAGATTCGGAAACATCTTTTATTTTCATTGACTTTCTCTTCTTTCTACAGTTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAGGTACTTCCAACATTTCCCACTTCATAACATAATTATCAGGACTATACCCTCCATTTTTGATTCTCAATTCCTTGAAGTCTTCTTAATTGCCATCTTACGCATTGATTAAAATGATGTTAGTACCCAATCAAGTGTAGATAGAAACAAGTACTGTCATGGTTACACATGTTTGCTGTGTTAGTGTGCCCCTTCAAACCTGAATAAAGCCATGAAGTCTAATTGTATTCATTTGATAATTGTGCAAATGGTGTAAACTTCTGTGATTATTATCGTTAGCTTAGTGTCTTCTCTAACTATCATTGTCAGTCCCAAACCTACAGTCCTTCTTTGCGGCAATATCTGAATTGGTTGGGAGAAAGTAGCATACGACTTACATGACAAATTTAAGGAGGTTTTCAGGTAGTTGTGTGGTGGTTATGGGGCATGTCATGGAAAAATTGTGCTTAACTCATTTTTTAAGAGCACAATTTAGCCTGCTAGAGCTAATAAGACCTACACTTGATGCATAAATGGAGAATTTTTAGGGCTGCAAATAATAGCTTCGGATTCTGGTTAAATAAGGTGGGAATCTGGGAGATATAAAGATGTTACCAGTCTCACCCCCATAATGAATTGGAAAAATGTGTTCGGATTAAGAGAATATGAAAGCAAGGATGTGAAAAAGTAAAGATGAGCAGGAAGGGGTGGGTGTTACAACTGTGTCTTTCCAACATGTAGATTTTTTCCAGCATGTCATTATCGTACCCATGACTAAACTCAAAAAGCAAATAGCTAGATTGGGTGATATTCATGTATTTCAACAATGTCGTGAAGTGCATATAAGTTTCAGTTATGAATTTAAATTCTCCTTATCTGCTTTATAGAAGCATCTTTCTTTGTTTTCTTTGAGTTCTTGCTTCTTGTTAAATTATATGCAAGTTCATGAAGTGCTGCTCATAGTAAGGTTTCTAATTTTCTATATTCGAAATTCTTAACCTCATTCTCGTTTAACTTGTCTAGTCATTTTTCTCTCCTCATTCAATTGATTGCGCTAGAATGTTTGTCATTCCTTATAGTGAACTAGAGTTATAATTAGTCTTTCTTTGTTGATGATGCGTCTCAGGTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAACAGTAGACAGCAATTTGGTGTGCTTGCTCCTTTATCTCTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTGCCAGTCCCTTAAAAATCGTCGACATGGCTCCCGTTAGATAGTGAAGAAATGCAAAAAAATGTCGTTTTCAACCATTTGGCACTATTATCAAGTTTTGTAAATTGTAATCGACTTACCTTTATCCTGCTTTAAGAGTGATAATTCTTGCTGTGTCTCTTTTATTAATACAAAACAATTTTGCAAGGGA</genome_strand>
        <mrna_strand>CAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAG..............................................................................................................................ACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATG.........................................................................TTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAACAGTAGACAGCAATTTGGTGTGCTTGCTCCTTTATCTCTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTGCCAGTCCCTTAAAAATCGTCGACATGGCTCCCGTTAGATAGTGAAGAAATGCAAAAAAATGTCGTTTTCAACCATTTGGCACTATTATCAAGTTTTGTAAATTGTAATCGACTTACCTTTATCCTGCTTTAAGAGTGATAATTCTTGCTGTGTCTCTTTTATTAATACAAAACAATTTTGCAAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E617275" ref_strand="+" ref_description="SGN-E617275 [90751]">
      <seq>cttttagattgacaaaaacttagggtttagcatttggaaattgagaatggcgacgccggcgacctcaccgaactctgaatccgattccgacgttgaaacaagtccggtggcgaacccgtcacccggccagaatcctcaattcacctctgatgcgttaaccactgcgattccgtctagtcctgttgtctgcctccttcgattcgccggtgactctgctgctggagccttcatgggctccattttcggatacggctcaggattgataaagaaaaaaggctttaaaggatcctttggggaagcaggagcttcggcaaagacttttgcagttttatctggagttcatagtttagttgtctgcttcttgaagagattacggggaaaagatgatgttatcaatgctggagtagctggatgttgcactggtcttgccctaagttttccaggtgcacctcaggccctattacagagttgtctcacctttggggcattttcgttcatcatcgaaggtcttaacaagcagcaacctgcattagctcttacatctcacatgaatgtcaatagtaggcagcaatttggtgtgcttgctcctttatcactacctctaccaaatgagctcaaggaatccttttcattcttctgccagtcccttaaaaatcgtcgacatggctccggttagataatgaagaaatgcaacaaaatgtggttttcaaccttttggacgattatcaagttttgtaaattgtaatcgacttacttttatcccgctttaagagtgatgattcttgctgtgtctctttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="66287" stop="62559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65987" g_stop="65738" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65737" i_stop="64711" i_length="1027">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64710" g_stop="64646" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="316" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64645" i_stop="64520" i_length="126">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64519" g_stop="64447" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="389" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64446" i_stop="64374" i_length="73">
            <donor d_prob="0.358" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64373" g_stop="64320" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="443" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64319" i_stop="63218" i_length="1102">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63217" g_stop="62859" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="800" r_length="357" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E617275" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E617275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65987" e_stop="65738"/>
          <exon e_start="64710" e_stop="64646"/>
          <exon e_start="64519" e_stop="64447"/>
          <exon e_start="64373" e_stop="64320"/>
          <exon e_start="63217" e_stop="62859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTAGATTGACAAAA-CTTAGGGTTTAGCATTTGGAAATTGAGAATGGCGACGCCGACGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGACAGAATCCTCAATTCACCTCTGATGCGTTAACCACTGCGATTCCGTCTACTCCAGTCGTATGCCTCCTTAGGTTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGATCCATTTTCGGATACGGTAATTGTTTATGCAATTTTCTCCCTTAATCTGTCTATTATCGACGAGTTAATAGTTTGAATTTGGTTAGTTTGTTAGTTCAGCTGGATTTTTTGTGGAAATAGCTGAAATGAGTTACTTCTGATTGTTATTTTCGTTTGTTTTCTATACGGAGTTATCTAGAACTTATTCTTTTGTTGTTTTATGCATTTTCCTCCGCCAATATGTCTATTGTCGACTCGTTAATAGGTGCAATTTGGTTAGTTTGTTAGTTCAGCTGAATTTTTTGTGGAATAGTTGAAATGAGTTACTTCTGATTGTTAATTTTGGGATTGTGTTCTCTACGGAGTTATATGAAGCTTATGTTTTGTTGTTTTATGCATTTGACAACCGATGTCTTTTACCAGTTGTAGATATTCGTAGTAGAATTGTGTATCAACCTGTTACCTGTGTAGTGCTGCAGCTGACCTGATATAGCAGTTTTATGTTCACCTTCACCAGTTTGTTTGTTGGAGTCTCACAGTCTCTCGGGAGACGAATCTGTGCTTTTGCAAATTATTATATTTGGCTCTATTGCTATAGTCTGTTTCTCACTCGTGTATGATTGTTGGGGGGTGTACATGAACTATAGTTGTGTATATTAGTACATTATGAGTGTGACAGGAGGTGAAGGCTTCTCTGAATTCGACTACTGATTTCTCGTATCTTCTTCATCCTTTATTTTGTTTGATGACTCACTACAATAACTGAGTTGTGCGTTATCCTTTTATGGTAACCTCTAGTTTCTCCAAGTGTAATGAGCGTCAACCGCCCTATATTTTGAAGTTGTTTGTTATTTCTTCTGTTTGTTTGTCTAGTCCATATTTCCTTTAACAAATAACATCCTTCTGTTGCTACTGCCGACCTTGCATTTCGGGGAACCCTTCTTTCAATACTTTGCTTCTATAAGATTAAATAGCTTCTGGGGATCATAAATGGAATTCTTTGAGTGCAAGGGAAACATTATAAGTTGGTGATGTGCTCAATTTTGCTCAATGTGCTGTTTCAGGCTCAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAGGTATTTCAATCTTTGATCAATGCCTTAATGATATTTTTGGCAAACTACAGTATAACCACTGTTACTGCTTCCCTCTTTTAATATGTCTAATTGTGACTTGGTTCATTTCCCCTTTCTGTTGTCTAGACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATGGTATGACACACACTTTGAACAGCCAGATTCGGAAACATCTTTTATTTTCATTGACTTTCTCTTCTTTCTACAGTTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAGGTACTTCCAACATTTCCCACTTCATAACATAATTATCAGGACTATACCCTCCATTTTTGATTCTCAATTCCTTGAAGTCTTCTTAATTGCCATCTTACGCATTGATTAAAATGATGTTAGTACCCAATCAAGTGTAGATAGAAACAAGTACTGTCATGGTTACACATGTTTGCTGTGTTAGTGTGCCCCTTCAAACCTGAATAAAGCCATGAAGTCTAATTGTATTCATTTGATAATTGTGCAAATGGTGTAAACTTCTGTGATTATTATCGTTAGCTTAGTGTCTTCTCTAACTATCATTGTCAGTCCCAAACCTACAGTCCTTCTTTGCGGCAATATCTGAATTGGTTGGGAGAAAGTAGCATACGACTTACATGACAAATTTAAGGAGGTTTTCAGGTAGTTGTGTGGTGGTTATGGGGCATGTCATGGAAAAATTGTGCTTAACTCATTTTTTAAGAGCACAATTTAGCCTGCTAGAGCTAATAAGACCTACACTTGATGCATAAATGGAGAATTTTTAGGGCTGCAAATAATAGCTTCGGATTCTGGTTAAATAAGGTGGGAATCTGGGAGATATAAAGATGTTACCAGTCTCACCCCCATAATGAATTGGAAAAATGTGTTCGGATTAAGAGAATATGAAAGCAAGGATGTGAAAAAGTAAAGATGAGCAGGAAGGGGTGGGTGTTACAACTGTGTCTTTCCAACATGTAGATTTTTTCCAGCATGTCATTATCGTACCCATGACTAAACTCAAAAAGCAAATAGCTAGATTGGGTGATATTCATGTATTTCAACAATGTCGTGAAGTGCATATAAGTTTCAGTTATGAATTTAAATTCTCCTTATCTGCTTTATAGAAGCATCTTTCTTTGTTTTCTTTGAGTTCTTGCTTCTTGTTAAATTATATGCAAGTTCATGAAGTGCTGCTCATAGTAAGGTTTCTAATTTTCTATATTCGAAATTCTTAACCTCATTCTCGTTTAACTTGTCTAGTCATTTTTCTCTCCTCATTCAATTGATTGCGCTAGAATGTTTGTCATTCCTTATAGTGAACTAGAGTTATAATTAGTCTTTCTTTGTTGATGATGCGTCTCAGGTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAACAGTAGACAGCAATTTGGTGTGCTTGCTCCTTTATCTCTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTGCCAGTCCCTTAAAAATCGTCGACATGGCTCCCGTTAGATAGTGAAGAAATGCAAAAAAATGTCGTTTTCAACCATTTGGCACTATTATCAAGTTTTGTAAATTGTAATCGACTTACCTTTATCCTGCTTTAAGAGTGATAATTCTTGCTGTGTCTCTTTTATT</genome_strand>
        <mrna_strand>CTTTTAGATTGACAAAAACTTAGGGTTTAGCATTTGGAAATTGAGAATGGCGACGCCGGCGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGCCAGAATCCTCAATTCACCTCTGATGCGTTAACCACTGCGATTCCGTCTAGTCCTGTTGTCTGCCTCCTTCGATTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGCTCCATTTTCGGATACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGATTGATAAAGAAAAAAGGCTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAG..............................................................................................................................ACTTTTGCAGTTTTATCTGGAGTTCATAGTTTAGTTGTCTGCTTCTTGAAGAGATTACGGGGAAAAGATGATG.........................................................................TTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTCAGGCCCTATTACAGAGTTGTCTCACCTTTGGGGCATTTTCGTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAATAGTAGGCAGCAATTTGGTGTGCTTGCTCCTTTATCACTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTGCCAGTCCCTTAAAAATCGTCGACATGGCTCCGGTTAGATAATGAAGAAATGCAACAAAATGTGGTTTTCAACCTTTTGG-ACGATTATCAAGTTTTGTAAATTGTAATCGACTTACTTTTATCCCGCTTTAAGAGTGATGATTCTTGCTGTGTCTC-TTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E596782" ref_strand="+" ref_description="SGN-E596782 [40271]">
      <seq>ggaaattgagaatggcgacgccggcgacctcaccgaactctgaatccgattccgagcgttgaaacaagtccggtggcgaacccgtcacccggccagaatcctcaattcacctctgatgcgttaaccactgcgattccgtctagtcctgttgtctgcctccttcgattcgccggtgactctgctgctggagccttcatgggctccatttttggatacggctcaggattgataaagaagaaaggctttaaaggatcctttggggaagcaggagcttcggcaaagacttttgcagttttatctggagttcatagtttagttgtctgcttcttgaagagattacggggaaaagatgatgttatcaatgctggagtagctggatgttgcactggtcttgccctaagttttccaggtgcacctcaggccctattacagagttgtctcacctttggggcattttcgttcatcatcgaaggtcttaacaagcagcaacctgcattagctcttacatctcacatgaatgtcaatagtaggcagcaatttggtgtgcttgctcctttatcactacctctaccaaatgagctcaaggaatccttttcattcttctgccagtcccttaaaaatcgtcgacatggctccggttagcatcatgcaagaaatgcaacaaaatgtgggtcttcaaacctttgggacgattatcaagtttggtaaattgtaatcgaattacttttatccggttttaagagtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="66253" stop="62583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65953" g_stop="65738" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65737" i_stop="64711" i_length="1027">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64710" g_stop="64646" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="282" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64645" i_stop="64520" i_length="126">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64519" g_stop="64447" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="355" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64446" i_stop="64374" i_length="73">
            <donor d_prob="0.358" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64373" g_stop="64320" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="409" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64319" i_stop="63218" i_length="1102">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63217" g_stop="62883" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="747" r_length="338" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E596782" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E596782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65953" e_stop="65738"/>
          <exon e_start="64710" e_stop="64646"/>
          <exon e_start="64519" e_stop="64447"/>
          <exon e_start="64373" e_stop="64320"/>
          <exon e_start="63217" e_stop="62883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATTGAGAATGGCGACGCCGACGACCTCACCGAACTCTGAATCCGATTCCGA-CGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGACAGAATCCTCAATTCACCTCTGATGCGTTAACCACTGCGATTCCGTCTACTCCAGTCGTATGCCTCCTTAGGTTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGATCCATTTTCGGATACGGTAATTGTTTATGCAATTTTCTCCCTTAATCTGTCTATTATCGACGAGTTAATAGTTTGAATTTGGTTAGTTTGTTAGTTCAGCTGGATTTTTTGTGGAAATAGCTGAAATGAGTTACTTCTGATTGTTATTTTCGTTTGTTTTCTATACGGAGTTATCTAGAACTTATTCTTTTGTTGTTTTATGCATTTTCCTCCGCCAATATGTCTATTGTCGACTCGTTAATAGGTGCAATTTGGTTAGTTTGTTAGTTCAGCTGAATTTTTTGTGGAATAGTTGAAATGAGTTACTTCTGATTGTTAATTTTGGGATTGTGTTCTCTACGGAGTTATATGAAGCTTATGTTTTGTTGTTTTATGCATTTGACAACCGATGTCTTTTACCAGTTGTAGATATTCGTAGTAGAATTGTGTATCAACCTGTTACCTGTGTAGTGCTGCAGCTGACCTGATATAGCAGTTTTATGTTCACCTTCACCAGTTTGTTTGTTGGAGTCTCACAGTCTCTCGGGAGACGAATCTGTGCTTTTGCAAATTATTATATTTGGCTCTATTGCTATAGTCTGTTTCTCACTCGTGTATGATTGTTGGGGGGTGTACATGAACTATAGTTGTGTATATTAGTACATTATGAGTGTGACAGGAGGTGAAGGCTTCTCTGAATTCGACTACTGATTTCTCGTATCTTCTTCATCCTTTATTTTGTTTGATGACTCACTACAATAACTGAGTTGTGCGTTATCCTTTTATGGTAACCTCTAGTTTCTCCAAGTGTAATGAGCGTCAACCGCCCTATATTTTGAAGTTGTTTGTTATTTCTTCTGTTTGTTTGTCTAGTCCATATTTCCTTTAACAAATAACATCCTTCTGTTGCTACTGCCGACCTTGCATTTCGGGGAACCCTTCTTTCAATACTTTGCTTCTATAAGATTAAATAGCTTCTGGGGATCATAAATGGAATTCTTTGAGTGCAAGGGAAACATTATAAGTTGGTGATGTGCTCAATTTTGCTCAATGTGCTGTTTCAGGCTCAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAGGTATTTCAATCTTTGATCAATGCCTTAATGATATTTTTGGCAAACTACAGTATAACCACTGTTACTGCTTCCCTCTTTTAATATGTCTAATTGTGACTTGGTTCATTTCCCCTTTCTGTTGTCTAGACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATGGTATGACACACACTTTGAACAGCCAGATTCGGAAACATCTTTTATTTTCATTGACTTTCTCTTCTTTCTACAGTTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAGGTACTTCCAACATTTCCCACTTCATAACATAATTATCAGGACTATACCCTCCATTTTTGATTCTCAATTCCTTGAAGTCTTCTTAATTGCCATCTTACGCATTGATTAAAATGATGTTAGTACCCAATCAAGTGTAGATAGAAACAAGTACTGTCATGGTTACACATGTTTGCTGTGTTAGTGTGCCCCTTCAAACCTGAATAAAGCCATGAAGTCTAATTGTATTCATTTGATAATTGTGCAAATGGTGTAAACTTCTGTGATTATTATCGTTAGCTTAGTGTCTTCTCTAACTATCATTGTCAGTCCCAAACCTACAGTCCTTCTTTGCGGCAATATCTGAATTGGTTGGGAGAAAGTAGCATACGACTTACATGACAAATTTAAGGAGGTTTTCAGGTAGTTGTGTGGTGGTTATGGGGCATGTCATGGAAAAATTGTGCTTAACTCATTTTTTAAGAGCACAATTTAGCCTGCTAGAGCTAATAAGACCTACACTTGATGCATAAATGGAGAATTTTTAGGGCTGCAAATAATAGCTTCGGATTCTGGTTAAATAAGGTGGGAATCTGGGAGATATAAAGATGTTACCAGTCTCACCCCCATAATGAATTGGAAAAATGTGTTCGGATTAAGAGAATATGAAAGCAAGGATGTGAAAAAGTAAAGATGAGCAGGAAGGGGTGGGTGTTACAACTGTGTCTTTCCAACATGTAGATTTTTTCCAGCATGTCATTATCGTACCCATGACTAAACTCAAAAAGCAAATAGCTAGATTGGGTGATATTCATGTATTTCAACAATGTCGTGAAGTGCATATAAGTTTCAGTTATGAATTTAAATTCTCCTTATCTGCTTTATAGAAGCATCTTTCTTTGTTTTCTTTGAGTTCTTGCTTCTTGTTAAATTATATGCAAGTTCATGAAGTGCTGCTCATAGTAAGGTTTCTAATTTTCTATATTCGAAATTCTTAACCTCATTCTCGTTTAACTTGTCTAGTCATTTTTCTCTCCTCATTCAATTGATTGCGCTAGAATGTTTGTCATTCCTTATAGTGAACTAGAGTTATAATTAGTCTTTCTTTGTTGATGATGCGTCTCAGGTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAACAGTAGACAGCAATTTGGTGTGCTTGCTCCTTTATCTCTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTGCCAGTCCCTTAAAAATCGTCGACATGGCTCCCGTTAG-ATAGTG-AAGAAATGCAAAAAAATGT-CGTTTTCAACCATTTGGCACTATTATCAAGTTTTGTAAATTGTAATCGACTTACCTTTATCCTGCTTTAAGAGTGAT</genome_strand>
        <mrna_strand>GGAAATTGAGAATGGCGACGCCGGCGACCTCACCGAACTCTGAATCCGATTCCGAGCGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGCCAGAATCCTCAATTCACCTCTGATGCGTTAACCACTGCGATTCCGTCTAGTCCTGTTGTCTGCCTCCTTCGATTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGCTCCATTTTTGGATACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGATTGATAAAGAAGAAAGGCTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAG..............................................................................................................................ACTTTTGCAGTTTTATCTGGAGTTCATAGTTTAGTTGTCTGCTTCTTGAAGAGATTACGGGGAAAAGATGATG.........................................................................TTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTCAGGCCCTATTACAGAGTTGTCTCACCTTTGGGGCATTTTCGTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAATAGTAGGCAGCAATTTGGTGTGCTTGCTCCTTTATCACTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTGCCAGTCCCTTAAAAATCGTCGACATGGCTCCGGTTAGCATCATGCAAGAAATGCAACAAAATGTGGGTCTTCAAACCTTTGGGACGATTATCAAGTTTGGTAAATTGTAATCGAATTACTTTTATCCGGTTTTAAGAGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E733731" ref_strand="+" ref_description="SGN-E733731 [LB10DB10]">
      <seq>cgcttttagattgacaaaacttagggtttagcatttggaaattgagaatggcgacgccgacgacctcaccgaactctgaatccgattccgacgttgaaacaagtccggtggcgaacccgtcacccggacagaatcctcaattcacctctgatgcgttaaccactgcgattccgtctactccagtcgtatgcctccttaggttcgccggtgactctgctgctggagccttcatgggatccattttcggatacggctcaggattaataaagaagaaaggttttaaaggatcctttggggaagcaggagcttcggcaaagacttttgcagttttatcaggagttcatagtttagttgtctgtttcttgaagagaatacggggaaaagatgatgttatcaatgctggagtagctggatgttgcactggtcttgccctaagttttccaggtgcacctcaggctctactacagagttgtctcacctttggggcattttctttcatcatcgaaggtcttaacaagcagcaacctgcattagctcttacatctcacatgaatgtcaacagtagacagcaatttggtgtgcttgctcctttatctctacctctaccaaatgagctcaaggaatccttttcattcttctgccagtcccttaaaaatcgtcgacatggctcccgttagatagtgaagaaatgcaaaaaaatgtcgttttcaaccatttggcactattatcaagttttgtaaattgtaatcgacttacctttatcctgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="66287" stop="62596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65989" g_stop="65738" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65737" i_stop="64711" i_length="1027">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64710" g_stop="64646" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="317" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64645" i_stop="64520" i_length="126">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64519" g_stop="64447" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="390" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64446" i_stop="64374" i_length="73">
            <donor d_prob="0.358" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64373" g_stop="64320" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="444" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64319" i_stop="63218" i_length="1102">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63217" g_stop="62884" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="778" r_length="334" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E733731" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65989" e_stop="65738"/>
          <exon e_start="64710" e_stop="64646"/>
          <exon e_start="64519" e_stop="64447"/>
          <exon e_start="64373" e_stop="64320"/>
          <exon e_start="63217" e_stop="62884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTTAGATTGACAAAACTTAGGGTTTAGCATTTGGAAATTGAGAATGGCGACGCCGACGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGACAGAATCCTCAATTCACCTCTGATGCGTTAACCACTGCGATTCCGTCTACTCCAGTCGTATGCCTCCTTAGGTTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGATCCATTTTCGGATACGGTAATTGTTTATGCAATTTTCTCCCTTAATCTGTCTATTATCGACGAGTTAATAGTTTGAATTTGGTTAGTTTGTTAGTTCAGCTGGATTTTTTGTGGAAATAGCTGAAATGAGTTACTTCTGATTGTTATTTTCGTTTGTTTTCTATACGGAGTTATCTAGAACTTATTCTTTTGTTGTTTTATGCATTTTCCTCCGCCAATATGTCTATTGTCGACTCGTTAATAGGTGCAATTTGGTTAGTTTGTTAGTTCAGCTGAATTTTTTGTGGAATAGTTGAAATGAGTTACTTCTGATTGTTAATTTTGGGATTGTGTTCTCTACGGAGTTATATGAAGCTTATGTTTTGTTGTTTTATGCATTTGACAACCGATGTCTTTTACCAGTTGTAGATATTCGTAGTAGAATTGTGTATCAACCTGTTACCTGTGTAGTGCTGCAGCTGACCTGATATAGCAGTTTTATGTTCACCTTCACCAGTTTGTTTGTTGGAGTCTCACAGTCTCTCGGGAGACGAATCTGTGCTTTTGCAAATTATTATATTTGGCTCTATTGCTATAGTCTGTTTCTCACTCGTGTATGATTGTTGGGGGGTGTACATGAACTATAGTTGTGTATATTAGTACATTATGAGTGTGACAGGAGGTGAAGGCTTCTCTGAATTCGACTACTGATTTCTCGTATCTTCTTCATCCTTTATTTTGTTTGATGACTCACTACAATAACTGAGTTGTGCGTTATCCTTTTATGGTAACCTCTAGTTTCTCCAAGTGTAATGAGCGTCAACCGCCCTATATTTTGAAGTTGTTTGTTATTTCTTCTGTTTGTTTGTCTAGTCCATATTTCCTTTAACAAATAACATCCTTCTGTTGCTACTGCCGACCTTGCATTTCGGGGAACCCTTCTTTCAATACTTTGCTTCTATAAGATTAAATAGCTTCTGGGGATCATAAATGGAATTCTTTGAGTGCAAGGGAAACATTATAAGTTGGTGATGTGCTCAATTTTGCTCAATGTGCTGTTTCAGGCTCAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAGGTATTTCAATCTTTGATCAATGCCTTAATGATATTTTTGGCAAACTACAGTATAACCACTGTTACTGCTTCCCTCTTTTAATATGTCTAATTGTGACTTGGTTCATTTCCCCTTTCTGTTGTCTAGACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATGGTATGACACACACTTTGAACAGCCAGATTCGGAAACATCTTTTATTTTCATTGACTTTCTCTTCTTTCTACAGTTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAGGTACTTCCAACATTTCCCACTTCATAACATAATTATCAGGACTATACCCTCCATTTTTGATTCTCAATTCCTTGAAGTCTTCTTAATTGCCATCTTACGCATTGATTAAAATGATGTTAGTACCCAATCAAGTGTAGATAGAAACAAGTACTGTCATGGTTACACATGTTTGCTGTGTTAGTGTGCCCCTTCAAACCTGAATAAAGCCATGAAGTCTAATTGTATTCATTTGATAATTGTGCAAATGGTGTAAACTTCTGTGATTATTATCGTTAGCTTAGTGTCTTCTCTAACTATCATTGTCAGTCCCAAACCTACAGTCCTTCTTTGCGGCAATATCTGAATTGGTTGGGAGAAAGTAGCATACGACTTACATGACAAATTTAAGGAGGTTTTCAGGTAGTTGTGTGGTGGTTATGGGGCATGTCATGGAAAAATTGTGCTTAACTCATTTTTTAAGAGCACAATTTAGCCTGCTAGAGCTAATAAGACCTACACTTGATGCATAAATGGAGAATTTTTAGGGCTGCAAATAATAGCTTCGGATTCTGGTTAAATAAGGTGGGAATCTGGGAGATATAAAGATGTTACCAGTCTCACCCCCATAATGAATTGGAAAAATGTGTTCGGATTAAGAGAATATGAAAGCAAGGATGTGAAAAAGTAAAGATGAGCAGGAAGGGGTGGGTGTTACAACTGTGTCTTTCCAACATGTAGATTTTTTCCAGCATGTCATTATCGTACCCATGACTAAACTCAAAAAGCAAATAGCTAGATTGGGTGATATTCATGTATTTCAACAATGTCGTGAAGTGCATATAAGTTTCAGTTATGAATTTAAATTCTCCTTATCTGCTTTATAGAAGCATCTTTCTTTGTTTTCTTTGAGTTCTTGCTTCTTGTTAAATTATATGCAAGTTCATGAAGTGCTGCTCATAGTAAGGTTTCTAATTTTCTATATTCGAAATTCTTAACCTCATTCTCGTTTAACTTGTCTAGTCATTTTTCTCTCCTCATTCAATTGATTGCGCTAGAATGTTTGTCATTCCTTATAGTGAACTAGAGTTATAATTAGTCTTTCTTTGTTGATGATGCGTCTCAGGTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAACAGTAGACAGCAATTTGGTGTGCTTGCTCCTTTATCTCTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTGCCAGTCCCTTAAAAATCGTCGACATGGCTCCCGTTAGATAGTGAAGAAATGCAAAAAAATGTCGTTTTCAACCATTTGGCACTATTATCAAGTTTTGTAAATTGTAATCGACTTACCTTTATCCTGCTTTAAGAGTGA</genome_strand>
        <mrna_strand>CGCTTTTAGATTGACAAAACTTAGGGTTTAGCATTTGGAAATTGAGAATGGCGACGCCGACGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGACAGAATCCTCAATTCACCTCTGATGCGTTAACCACTGCGATTCCGTCTACTCCAGTCGTATGCCTCCTTAGGTTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGATCCATTTTCGGATACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAG..............................................................................................................................ACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATG.........................................................................TTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAACAGTAGACAGCAATTTGGTGTGCTTGCTCCTTTATCTCTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTGCCAGTCCCTTAAAAATCGTCGACATGGCTCCCGTTAGATAGTGAAGAAATGCAAAAAAATGTCGTTTTCAACCATTTGGCACTATTATCAAGTTTTGTAAATTGTAATCGACTTACCTTTATCCTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E609177" ref_strand="+" ref_description="SGN-E609177 [25180]">
      <seq>gggtttagcatttggaaattgagaatggcgacgccggcgacctcaccgaactctgaatccgattccgacgttgaaacaagtccggtggcgaacccgtcacccggccagaatcctcaattcacctctgatgcgttaaccactgcgattccgtctagtcctgttgtctgcctccttcgattcgccggtgactctgctgctggagccttcatgggctccatttttggatacggctcaggattgataaagaagaaaggctttaaaggatcctttggggaagcaggagcttcggcaaagacttttgcagttttatctggagttcatagtttagttgtctgcttcttgaagagattacggggaaaagatgatgttatcaatgctggagtagctggatgttgcactggtcttgccctaagttttccaggtgcacctcaggccctattacagagttgtctcacctttggggcattttcgttcatcatcgaaggtcttaacaagcagcaacctgcattagctcttacatctcacatgaatgtcaatagtaggcagcaatttggtgtgcttgctcctttatcactacctctaccaaatgagctcaaggaatccttttcattcttctgccagtcccttaaaaatcgtcgacatggctccggttaggataatgaagaaatgcaacaaaatgtggtcttcaaccttttggacgattatcaagttttggtaattgtatcggactttactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="66266" stop="62604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65966" g_stop="65738" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65737" i_stop="64711" i_length="1027">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64710" g_stop="64646" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="294" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64645" i_stop="64520" i_length="126">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64519" g_stop="64447" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="367" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64446" i_stop="64374" i_length="73">
            <donor d_prob="0.358" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64373" g_stop="64320" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="421" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64319" i_stop="63218" i_length="1102">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63217" g_stop="62903" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="736" r_length="315" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E609177" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E609177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65966" e_stop="65738"/>
          <exon e_start="64710" e_stop="64646"/>
          <exon e_start="64519" e_stop="64447"/>
          <exon e_start="64373" e_stop="64320"/>
          <exon e_start="63217" e_stop="62903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTTAGCATTTGGAAATTGAGAATGGCGACGCCGACGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGACAGAATCCTCAATTCACCTCTGATGCGTTAACCACTGCGATTCCGTCTACTCCAGTCGTATGCCTCCTTAGGTTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGATCCATTTTCGGATACGGTAATTGTTTATGCAATTTTCTCCCTTAATCTGTCTATTATCGACGAGTTAATAGTTTGAATTTGGTTAGTTTGTTAGTTCAGCTGGATTTTTTGTGGAAATAGCTGAAATGAGTTACTTCTGATTGTTATTTTCGTTTGTTTTCTATACGGAGTTATCTAGAACTTATTCTTTTGTTGTTTTATGCATTTTCCTCCGCCAATATGTCTATTGTCGACTCGTTAATAGGTGCAATTTGGTTAGTTTGTTAGTTCAGCTGAATTTTTTGTGGAATAGTTGAAATGAGTTACTTCTGATTGTTAATTTTGGGATTGTGTTCTCTACGGAGTTATATGAAGCTTATGTTTTGTTGTTTTATGCATTTGACAACCGATGTCTTTTACCAGTTGTAGATATTCGTAGTAGAATTGTGTATCAACCTGTTACCTGTGTAGTGCTGCAGCTGACCTGATATAGCAGTTTTATGTTCACCTTCACCAGTTTGTTTGTTGGAGTCTCACAGTCTCTCGGGAGACGAATCTGTGCTTTTGCAAATTATTATATTTGGCTCTATTGCTATAGTCTGTTTCTCACTCGTGTATGATTGTTGGGGGGTGTACATGAACTATAGTTGTGTATATTAGTACATTATGAGTGTGACAGGAGGTGAAGGCTTCTCTGAATTCGACTACTGATTTCTCGTATCTTCTTCATCCTTTATTTTGTTTGATGACTCACTACAATAACTGAGTTGTGCGTTATCCTTTTATGGTAACCTCTAGTTTCTCCAAGTGTAATGAGCGTCAACCGCCCTATATTTTGAAGTTGTTTGTTATTTCTTCTGTTTGTTTGTCTAGTCCATATTTCCTTTAACAAATAACATCCTTCTGTTGCTACTGCCGACCTTGCATTTCGGGGAACCCTTCTTTCAATACTTTGCTTCTATAAGATTAAATAGCTTCTGGGGATCATAAATGGAATTCTTTGAGTGCAAGGGAAACATTATAAGTTGGTGATGTGCTCAATTTTGCTCAATGTGCTGTTTCAGGCTCAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAGGTATTTCAATCTTTGATCAATGCCTTAATGATATTTTTGGCAAACTACAGTATAACCACTGTTACTGCTTCCCTCTTTTAATATGTCTAATTGTGACTTGGTTCATTTCCCCTTTCTGTTGTCTAGACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATGGTATGACACACACTTTGAACAGCCAGATTCGGAAACATCTTTTATTTTCATTGACTTTCTCTTCTTTCTACAGTTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAGGTACTTCCAACATTTCCCACTTCATAACATAATTATCAGGACTATACCCTCCATTTTTGATTCTCAATTCCTTGAAGTCTTCTTAATTGCCATCTTACGCATTGATTAAAATGATGTTAGTACCCAATCAAGTGTAGATAGAAACAAGTACTGTCATGGTTACACATGTTTGCTGTGTTAGTGTGCCCCTTCAAACCTGAATAAAGCCATGAAGTCTAATTGTATTCATTTGATAATTGTGCAAATGGTGTAAACTTCTGTGATTATTATCGTTAGCTTAGTGTCTTCTCTAACTATCATTGTCAGTCCCAAACCTACAGTCCTTCTTTGCGGCAATATCTGAATTGGTTGGGAGAAAGTAGCATACGACTTACATGACAAATTTAAGGAGGTTTTCAGGTAGTTGTGTGGTGGTTATGGGGCATGTCATGGAAAAATTGTGCTTAACTCATTTTTTAAGAGCACAATTTAGCCTGCTAGAGCTAATAAGACCTACACTTGATGCATAAATGGAGAATTTTTAGGGCTGCAAATAATAGCTTCGGATTCTGGTTAAATAAGGTGGGAATCTGGGAGATATAAAGATGTTACCAGTCTCACCCCCATAATGAATTGGAAAAATGTGTTCGGATTAAGAGAATATGAAAGCAAGGATGTGAAAAAGTAAAGATGAGCAGGAAGGGGTGGGTGTTACAACTGTGTCTTTCCAACATGTAGATTTTTTCCAGCATGTCATTATCGTACCCATGACTAAACTCAAAAAGCAAATAGCTAGATTGGGTGATATTCATGTATTTCAACAATGTCGTGAAGTGCATATAAGTTTCAGTTATGAATTTAAATTCTCCTTATCTGCTTTATAGAAGCATCTTTCTTTGTTTTCTTTGAGTTCTTGCTTCTTGTTAAATTATATGCAAGTTCATGAAGTGCTGCTCATAGTAAGGTTTCTAATTTTCTATATTCGAAATTCTTAACCTCATTCTCGTTTAACTTGTCTAGTCATTTTTCTCTCCTCATTCAATTGATTGCGCTAGAATGTTTGTCATTCCTTATAGTGAACTAGAGTTATAATTAGTCTTTCTTTGTTGATGATGCGTCTCAGGTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAACAGTAGACAGCAATTTGGTGTGCTTGCTCCTTTATCTCTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTGCCAGTCCCTTAAAAATCGTCGACATGGCTCCCGTTA-GATAGTGAAGAAATGCAAAAAAATGTCGTTTTCAACCATTTGGCACTATTATCAAGTTTTGTAAATTGTAATCGACTTACCTT</genome_strand>
        <mrna_strand>GGGTTTAGCATTTGGAAATTGAGAATGGCGACGCCGGCGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGCCAGAATCCTCAATTCACCTCTGATGCGTTAACCACTGCGATTCCGTCTAGTCCTGTTGTCTGCCTCCTTCGATTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGCTCCATTTTTGGATACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGATTGATAAAGAAGAAAGGCTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAG..............................................................................................................................ACTTTTGCAGTTTTATCTGGAGTTCATAGTTTAGTTGTCTGCTTCTTGAAGAGATTACGGGGAAAAGATGATG.........................................................................TTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTCAGGCCCTATTACAGAGTTGTCTCACCTTTGGGGCATTTTCGTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAATAGTAGGCAGCAATTTGGTGTGCTTGCTCCTTTATCACTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTGCCAGTCCCTTAAAAATCGTCGACATGGCTCCGGTTAGGATAATGAAGAAATGCAACAAAATGTGGTCTTCAACCTTTTGG-ACGATTATCAAGTTTTGGTAATTGTATCGGACTTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E578741" ref_strand="+" ref_description="SGN-E578741 [85862]">
      <seq>agaacttttagattgacaaaacttagggtttagcatttggaaattgagaatggcgacgccggcgacctcaccgaactctgaatccgattccgacgttgaaacaagtccggtggcgaacccgtcacccggccagaatcctcaattcacctctgatgcgtaaccacagcgattccgtctagtcctgttgtctgcctccttagattcgccggtgactctgctgctggagccttcatgggctccattttcggatacggctcaggattgataaagaaaaaaggctttaaaggatcctttggggaagcaggagcttcggcaaagacttttgcagttttatctggagttcatagtttagttgtctgcttcttgaagagattacggggaaaagatgatgttatcaatgctggagtagctggatgttgcactggtcttgccctaagttttccaggtgcacctcaggctcttttacagagttgtctcacctttggtgcattttcgttcatcatcgaaggtcttaacaagcagcaacctgcattagctcttacatctcacatgaatgtcaaaagtaggcagcaatttggtgtgcttgctcctttatcactacctctaccaaatgagctcaaggaatccttttcattcttctgccagtcccttaaaaatcgtcgacatggctccggttagatagtgaagaaatgcaacaaattgtggttttcaaccttttggcatgattatcaagttttgtcaattgtaatcgacttacacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="66291" stop="62602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65991" g_stop="65738" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65737" i_stop="64711" i_length="1027">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64710" g_stop="64646" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="318" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64645" i_stop="64520" i_length="126">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64519" g_stop="64447" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="391" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64446" i_stop="64374" i_length="73">
            <donor d_prob="0.358" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64373" g_stop="64320" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="445" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64319" i_stop="63218" i_length="1102">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63217" g_stop="62906" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="757" r_length="312" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E578741" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65991" e_stop="65738"/>
          <exon e_start="64710" e_stop="64646"/>
          <exon e_start="64519" e_stop="64447"/>
          <exon e_start="64373" e_stop="64320"/>
          <exon e_start="63217" e_stop="62906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTTTTAGATTGACAAAACTTAGGGTTTAGCATTTGGAAATTGAGAATGGCGACGCCGACGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGACAGAATCCTCAATTCACCTCTGATGCGTTAACCACTGCGATTCCGTCTACTCCAGTCGTATGCCTCCTTAGGTTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGATCCATTTTCGGATACGGTAATTGTTTATGCAATTTTCTCCCTTAATCTGTCTATTATCGACGAGTTAATAGTTTGAATTTGGTTAGTTTGTTAGTTCAGCTGGATTTTTTGTGGAAATAGCTGAAATGAGTTACTTCTGATTGTTATTTTCGTTTGTTTTCTATACGGAGTTATCTAGAACTTATTCTTTTGTTGTTTTATGCATTTTCCTCCGCCAATATGTCTATTGTCGACTCGTTAATAGGTGCAATTTGGTTAGTTTGTTAGTTCAGCTGAATTTTTTGTGGAATAGTTGAAATGAGTTACTTCTGATTGTTAATTTTGGGATTGTGTTCTCTACGGAGTTATATGAAGCTTATGTTTTGTTGTTTTATGCATTTGACAACCGATGTCTTTTACCAGTTGTAGATATTCGTAGTAGAATTGTGTATCAACCTGTTACCTGTGTAGTGCTGCAGCTGACCTGATATAGCAGTTTTATGTTCACCTTCACCAGTTTGTTTGTTGGAGTCTCACAGTCTCTCGGGAGACGAATCTGTGCTTTTGCAAATTATTATATTTGGCTCTATTGCTATAGTCTGTTTCTCACTCGTGTATGATTGTTGGGGGGTGTACATGAACTATAGTTGTGTATATTAGTACATTATGAGTGTGACAGGAGGTGAAGGCTTCTCTGAATTCGACTACTGATTTCTCGTATCTTCTTCATCCTTTATTTTGTTTGATGACTCACTACAATAACTGAGTTGTGCGTTATCCTTTTATGGTAACCTCTAGTTTCTCCAAGTGTAATGAGCGTCAACCGCCCTATATTTTGAAGTTGTTTGTTATTTCTTCTGTTTGTTTGTCTAGTCCATATTTCCTTTAACAAATAACATCCTTCTGTTGCTACTGCCGACCTTGCATTTCGGGGAACCCTTCTTTCAATACTTTGCTTCTATAAGATTAAATAGCTTCTGGGGATCATAAATGGAATTCTTTGAGTGCAAGGGAAACATTATAAGTTGGTGATGTGCTCAATTTTGCTCAATGTGCTGTTTCAGGCTCAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAGGTATTTCAATCTTTGATCAATGCCTTAATGATATTTTTGGCAAACTACAGTATAACCACTGTTACTGCTTCCCTCTTTTAATATGTCTAATTGTGACTTGGTTCATTTCCCCTTTCTGTTGTCTAGACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATGGTATGACACACACTTTGAACAGCCAGATTCGGAAACATCTTTTATTTTCATTGACTTTCTCTTCTTTCTACAGTTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAGGTACTTCCAACATTTCCCACTTCATAACATAATTATCAGGACTATACCCTCCATTTTTGATTCTCAATTCCTTGAAGTCTTCTTAATTGCCATCTTACGCATTGATTAAAATGATGTTAGTACCCAATCAAGTGTAGATAGAAACAAGTACTGTCATGGTTACACATGTTTGCTGTGTTAGTGTGCCCCTTCAAACCTGAATAAAGCCATGAAGTCTAATTGTATTCATTTGATAATTGTGCAAATGGTGTAAACTTCTGTGATTATTATCGTTAGCTTAGTGTCTTCTCTAACTATCATTGTCAGTCCCAAACCTACAGTCCTTCTTTGCGGCAATATCTGAATTGGTTGGGAGAAAGTAGCATACGACTTACATGACAAATTTAAGGAGGTTTTCAGGTAGTTGTGTGGTGGTTATGGGGCATGTCATGGAAAAATTGTGCTTAACTCATTTTTTAAGAGCACAATTTAGCCTGCTAGAGCTAATAAGACCTACACTTGATGCATAAATGGAGAATTTTTAGGGCTGCAAATAATAGCTTCGGATTCTGGTTAAATAAGGTGGGAATCTGGGAGATATAAAGATGTTACCAGTCTCACCCCCATAATGAATTGGAAAAATGTGTTCGGATTAAGAGAATATGAAAGCAAGGATGTGAAAAAGTAAAGATGAGCAGGAAGGGGTGGGTGTTACAACTGTGTCTTTCCAACATGTAGATTTTTTCCAGCATGTCATTATCGTACCCATGACTAAACTCAAAAAGCAAATAGCTAGATTGGGTGATATTCATGTATTTCAACAATGTCGTGAAGTGCATATAAGTTTCAGTTATGAATTTAAATTCTCCTTATCTGCTTTATAGAAGCATCTTTCTTTGTTTTCTTTGAGTTCTTGCTTCTTGTTAAATTATATGCAAGTTCATGAAGTGCTGCTCATAGTAAGGTTTCTAATTTTCTATATTCGAAATTCTTAACCTCATTCTCGTTTAACTTGTCTAGTCATTTTTCTCTCCTCATTCAATTGATTGCGCTAGAATGTTTGTCATTCCTTATAGTGAACTAGAGTTATAATTAGTCTTTCTTTGTTGATGATGCGTCTCAGGTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAACAGTAGACAGCAATTTGGTGTGCTTGCTCCTTTATCTCTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTGCCAGTCCCTTAAAAATCGTCGACATGGCTCCCGTTAGATAGTGAAGAAATGCAAAAAAATGTCGTTTTCAACCATTTGGCACTATTATCAAGTTTTGTAAATTGTAATCGACTTAC</genome_strand>
        <mrna_strand>AGAACTTTTAGATTGACAAAACTTAGGGTTTAGCATTTGGAAATTGAGAATGGCGACGCCGGCGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGCCAGAATCCTCAATTCACCTCTGATGCG-TAACCACAGCGATTCCGTCTAGTCCTGTTGTCTGCCTCCTTAGATTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGCTCCATTTTCGGATACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGATTGATAAAGAAAAAAGGCTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAG..............................................................................................................................ACTTTTGCAGTTTTATCTGGAGTTCATAGTTTAGTTGTCTGCTTCTTGAAGAGATTACGGGGAAAAGATGATG.........................................................................TTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTCAGGCTCTTTTACAGAGTTGTCTCACCTTTGGTGCATTTTCGTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAAAAGTAGGCAGCAATTTGGTGTGCTTGCTCCTTTATCACTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTGCCAGTCCCTTAAAAATCGTCGACATGGCTCCGGTTAGATAGTGAAGAAATGCAACAAATTGTGGTTTTCAACCTTTTGGCATGATTATCAAGTTTTGTCAATTGTAATCGACTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E343691" ref_strand="+" ref_description="SGN-E343691 [cTOF-20-M12]">
      <seq>aaatatcttagaacttttagattgacaaaacttagggtttagcatttggaaattgagaatggcgacgccgacgacctcaccgaactctgaatccgattccgacgttgaaacaagtccggtggcgaacccgtcacccggacagaatcctcaattcacctctgatgcgttaaccactgcgattccgtctactccagtcgtatgcctccttaggttcgccggtgactctgctgctggagccttcatgggatccattttcggatacggctcaggattaataaagaagaaaggttttaaaggatcctttggggaagcaggagcttcggcaaagacttttgcagttttatcaggagttcatagtttagttgtctgtttcttgaagagaatacggggaaaagatgatgttatcaatgctggagtagctggatgttgcactggtcttgccctaagttttccaggtgcacctcaggctctactacagagttgtctcacctttggggcattttctttcatcatcgaaggtcttaacaagcagcaacctgcattagctcttacatctcacatgaatgtcaacagtagacagcaatttggtgtgcttgctcctttatctctacctctaccaaatgagctcaaggaatccttttcattcttctgccagtcccttaaaaatcgtcgacatggctcccgttagatagtgaagaaatgcaaaaaaatgtcgttttcaaccatttggcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="66300" stop="62640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66000" g_stop="65738" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65737" i_stop="64711" i_length="1027">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64710" g_stop="64646" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="328" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64645" i_stop="64520" i_length="126">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64519" g_stop="64447" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="401" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64446" i_stop="64374" i_length="73">
            <donor d_prob="0.358" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64373" g_stop="64320" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="455" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64319" i_stop="63218" i_length="1102">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63217" g_stop="62940" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="733" r_length="278" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E343691" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66000" e_stop="65738"/>
          <exon e_start="64710" e_stop="64646"/>
          <exon e_start="64519" e_stop="64447"/>
          <exon e_start="64373" e_stop="64320"/>
          <exon e_start="63217" e_stop="62940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATCTTAGAACTTTTAGATTGACAAAACTTAGGGTTTAGCATTTGGAAATTGAGAATGGCGACGCCGACGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGACAGAATCCTCAATTCACCTCTGATGCGTTAACCACTGCGATTCCGTCTACTCCAGTCGTATGCCTCCTTAGGTTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGATCCATTTTCGGATACGGTAATTGTTTATGCAATTTTCTCCCTTAATCTGTCTATTATCGACGAGTTAATAGTTTGAATTTGGTTAGTTTGTTAGTTCAGCTGGATTTTTTGTGGAAATAGCTGAAATGAGTTACTTCTGATTGTTATTTTCGTTTGTTTTCTATACGGAGTTATCTAGAACTTATTCTTTTGTTGTTTTATGCATTTTCCTCCGCCAATATGTCTATTGTCGACTCGTTAATAGGTGCAATTTGGTTAGTTTGTTAGTTCAGCTGAATTTTTTGTGGAATAGTTGAAATGAGTTACTTCTGATTGTTAATTTTGGGATTGTGTTCTCTACGGAGTTATATGAAGCTTATGTTTTGTTGTTTTATGCATTTGACAACCGATGTCTTTTACCAGTTGTAGATATTCGTAGTAGAATTGTGTATCAACCTGTTACCTGTGTAGTGCTGCAGCTGACCTGATATAGCAGTTTTATGTTCACCTTCACCAGTTTGTTTGTTGGAGTCTCACAGTCTCTCGGGAGACGAATCTGTGCTTTTGCAAATTATTATATTTGGCTCTATTGCTATAGTCTGTTTCTCACTCGTGTATGATTGTTGGGGGGTGTACATGAACTATAGTTGTGTATATTAGTACATTATGAGTGTGACAGGAGGTGAAGGCTTCTCTGAATTCGACTACTGATTTCTCGTATCTTCTTCATCCTTTATTTTGTTTGATGACTCACTACAATAACTGAGTTGTGCGTTATCCTTTTATGGTAACCTCTAGTTTCTCCAAGTGTAATGAGCGTCAACCGCCCTATATTTTGAAGTTGTTTGTTATTTCTTCTGTTTGTTTGTCTAGTCCATATTTCCTTTAACAAATAACATCCTTCTGTTGCTACTGCCGACCTTGCATTTCGGGGAACCCTTCTTTCAATACTTTGCTTCTATAAGATTAAATAGCTTCTGGGGATCATAAATGGAATTCTTTGAGTGCAAGGGAAACATTATAAGTTGGTGATGTGCTCAATTTTGCTCAATGTGCTGTTTCAGGCTCAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAGGTATTTCAATCTTTGATCAATGCCTTAATGATATTTTTGGCAAACTACAGTATAACCACTGTTACTGCTTCCCTCTTTTAATATGTCTAATTGTGACTTGGTTCATTTCCCCTTTCTGTTGTCTAGACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATGGTATGACACACACTTTGAACAGCCAGATTCGGAAACATCTTTTATTTTCATTGACTTTCTCTTCTTTCTACAGTTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAGGTACTTCCAACATTTCCCACTTCATAACATAATTATCAGGACTATACCCTCCATTTTTGATTCTCAATTCCTTGAAGTCTTCTTAATTGCCATCTTACGCATTGATTAAAATGATGTTAGTACCCAATCAAGTGTAGATAGAAACAAGTACTGTCATGGTTACACATGTTTGCTGTGTTAGTGTGCCCCTTCAAACCTGAATAAAGCCATGAAGTCTAATTGTATTCATTTGATAATTGTGCAAATGGTGTAAACTTCTGTGATTATTATCGTTAGCTTAGTGTCTTCTCTAACTATCATTGTCAGTCCCAAACCTACAGTCCTTCTTTGCGGCAATATCTGAATTGGTTGGGAGAAAGTAGCATACGACTTACATGACAAATTTAAGGAGGTTTTCAGGTAGTTGTGTGGTGGTTATGGGGCATGTCATGGAAAAATTGTGCTTAACTCATTTTTTAAGAGCACAATTTAGCCTGCTAGAGCTAATAAGACCTACACTTGATGCATAAATGGAGAATTTTTAGGGCTGCAAATAATAGCTTCGGATTCTGGTTAAATAAGGTGGGAATCTGGGAGATATAAAGATGTTACCAGTCTCACCCCCATAATGAATTGGAAAAATGTGTTCGGATTAAGAGAATATGAAAGCAAGGATGTGAAAAAGTAAAGATGAGCAGGAAGGGGTGGGTGTTACAACTGTGTCTTTCCAACATGTAGATTTTTTCCAGCATGTCATTATCGTACCCATGACTAAACTCAAAAAGCAAATAGCTAGATTGGGTGATATTCATGTATTTCAACAATGTCGTGAAGTGCATATAAGTTTCAGTTATGAATTTAAATTCTCCTTATCTGCTTTATAGAAGCATCTTTCTTTGTTTTCTTTGAGTTCTTGCTTCTTGTTAAATTATATGCAAGTTCATGAAGTGCTGCTCATAGTAAGGTTTCTAATTTTCTATATTCGAAATTCTTAACCTCATTCTCGTTTAACTTGTCTAGTCATTTTTCTCTCCTCATTCAATTGATTGCGCTAGAATGTTTGTCATTCCTTATAGTGAACTAGAGTTATAATTAGTCTTTCTTTGTTGATGATGCGTCTCAGGTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAACAGTAGACAGCAATTTGGTGTGCTTGCTCCTTTATCTCTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTGCCAGTCCCTTAAAAATCGTCGACATGGCTCCCGTTAGATAGTGAAGAAATGCAAAAAAATGTCGTTTTCAACCATTTGGCAC</genome_strand>
        <mrna_strand>AAATATCTTAGAACTTTTAGATTGACAAAACTTAGGGTTTAGCATTTGGAAATTGAGAATGGCGACGCCGACGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGACAGAATCCTCAATTCACCTCTGATGCGTTAACCACTGCGATTCCGTCTACTCCAGTCGTATGCCTCCTTAGGTTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGATCCATTTTCGGATACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAG..............................................................................................................................ACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATG.........................................................................TTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAACAGTAGACAGCAATTTGGTGTGCTTGCTCCTTTATCTCTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTGCCAGTCCCTTAAAAATCGTCGACATGGCTCCCGTTAGATAGTGAAGAAATGCAAAAAAATGTCGTTTTCAACCATTTGGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E436185" ref_strand="+" ref_description="SGN-E436185 [STM-62-L13]">
      <seq>tggaaattgagaatggcgacgccggcgacctcaccgaactctgaatccgattccgacgttgaaacaagtccggtggcgaacccgtcacccggccagaatcctcaattcacctctgatgcgttaaccactgcgattccgtctagtcctgttgtctgcctccttcgattcgccggtgactctgctgctggagccttcatgggctccattttcggatacggctcaggattgataaagaaaaaaggctttaaaggatcctttggggaagcaggagcttcggcaaagacttttgcagttttatctggagttcatagtttagttgtctgcttcttgaagagattacggggaaaagatgatgttatcaatgctggagtagctggatgttgcactggtcttgccctaagttttccaggtgcacctcaggccctattacagagttgtctcacctttggggcattttcgttcatcatcgaaggtcttaacaagcagcaacctgcattagctcttacatctcacatgaatgtcaatagtaggcagcaatttggtgtgcttgctcctttatcactacctctaccaaatgagctcaaggaatccttttcattcttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="66254" stop="62722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65954" g_stop="65738" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65737" i_stop="64711" i_length="1027">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64710" g_stop="64646" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="282" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64645" i_stop="64520" i_length="126">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64519" g_stop="64447" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="355" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64446" i_stop="64374" i_length="73">
            <donor d_prob="0.358" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64373" g_stop="64320" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="409" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64319" i_stop="63218" i_length="1102">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63217" g_stop="63022" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="605" r_length="196" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E436185" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65954" e_stop="65738"/>
          <exon e_start="64710" e_stop="64646"/>
          <exon e_start="64519" e_stop="64447"/>
          <exon e_start="64373" e_stop="64320"/>
          <exon e_start="63217" e_stop="63022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAATTGAGAATGGCGACGCCGACGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGACAGAATCCTCAATTCACCTCTGATGCGTTAACCACTGCGATTCCGTCTACTCCAGTCGTATGCCTCCTTAGGTTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGATCCATTTTCGGATACGGTAATTGTTTATGCAATTTTCTCCCTTAATCTGTCTATTATCGACGAGTTAATAGTTTGAATTTGGTTAGTTTGTTAGTTCAGCTGGATTTTTTGTGGAAATAGCTGAAATGAGTTACTTCTGATTGTTATTTTCGTTTGTTTTCTATACGGAGTTATCTAGAACTTATTCTTTTGTTGTTTTATGCATTTTCCTCCGCCAATATGTCTATTGTCGACTCGTTAATAGGTGCAATTTGGTTAGTTTGTTAGTTCAGCTGAATTTTTTGTGGAATAGTTGAAATGAGTTACTTCTGATTGTTAATTTTGGGATTGTGTTCTCTACGGAGTTATATGAAGCTTATGTTTTGTTGTTTTATGCATTTGACAACCGATGTCTTTTACCAGTTGTAGATATTCGTAGTAGAATTGTGTATCAACCTGTTACCTGTGTAGTGCTGCAGCTGACCTGATATAGCAGTTTTATGTTCACCTTCACCAGTTTGTTTGTTGGAGTCTCACAGTCTCTCGGGAGACGAATCTGTGCTTTTGCAAATTATTATATTTGGCTCTATTGCTATAGTCTGTTTCTCACTCGTGTATGATTGTTGGGGGGTGTACATGAACTATAGTTGTGTATATTAGTACATTATGAGTGTGACAGGAGGTGAAGGCTTCTCTGAATTCGACTACTGATTTCTCGTATCTTCTTCATCCTTTATTTTGTTTGATGACTCACTACAATAACTGAGTTGTGCGTTATCCTTTTATGGTAACCTCTAGTTTCTCCAAGTGTAATGAGCGTCAACCGCCCTATATTTTGAAGTTGTTTGTTATTTCTTCTGTTTGTTTGTCTAGTCCATATTTCCTTTAACAAATAACATCCTTCTGTTGCTACTGCCGACCTTGCATTTCGGGGAACCCTTCTTTCAATACTTTGCTTCTATAAGATTAAATAGCTTCTGGGGATCATAAATGGAATTCTTTGAGTGCAAGGGAAACATTATAAGTTGGTGATGTGCTCAATTTTGCTCAATGTGCTGTTTCAGGCTCAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAGGTATTTCAATCTTTGATCAATGCCTTAATGATATTTTTGGCAAACTACAGTATAACCACTGTTACTGCTTCCCTCTTTTAATATGTCTAATTGTGACTTGGTTCATTTCCCCTTTCTGTTGTCTAGACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATGGTATGACACACACTTTGAACAGCCAGATTCGGAAACATCTTTTATTTTCATTGACTTTCTCTTCTTTCTACAGTTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAGGTACTTCCAACATTTCCCACTTCATAACATAATTATCAGGACTATACCCTCCATTTTTGATTCTCAATTCCTTGAAGTCTTCTTAATTGCCATCTTACGCATTGATTAAAATGATGTTAGTACCCAATCAAGTGTAGATAGAAACAAGTACTGTCATGGTTACACATGTTTGCTGTGTTAGTGTGCCCCTTCAAACCTGAATAAAGCCATGAAGTCTAATTGTATTCATTTGATAATTGTGCAAATGGTGTAAACTTCTGTGATTATTATCGTTAGCTTAGTGTCTTCTCTAACTATCATTGTCAGTCCCAAACCTACAGTCCTTCTTTGCGGCAATATCTGAATTGGTTGGGAGAAAGTAGCATACGACTTACATGACAAATTTAAGGAGGTTTTCAGGTAGTTGTGTGGTGGTTATGGGGCATGTCATGGAAAAATTGTGCTTAACTCATTTTTTAAGAGCACAATTTAGCCTGCTAGAGCTAATAAGACCTACACTTGATGCATAAATGGAGAATTTTTAGGGCTGCAAATAATAGCTTCGGATTCTGGTTAAATAAGGTGGGAATCTGGGAGATATAAAGATGTTACCAGTCTCACCCCCATAATGAATTGGAAAAATGTGTTCGGATTAAGAGAATATGAAAGCAAGGATGTGAAAAAGTAAAGATGAGCAGGAAGGGGTGGGTGTTACAACTGTGTCTTTCCAACATGTAGATTTTTTCCAGCATGTCATTATCGTACCCATGACTAAACTCAAAAAGCAAATAGCTAGATTGGGTGATATTCATGTATTTCAACAATGTCGTGAAGTGCATATAAGTTTCAGTTATGAATTTAAATTCTCCTTATCTGCTTTATAGAAGCATCTTTCTTTGTTTTCTTTGAGTTCTTGCTTCTTGTTAAATTATATGCAAGTTCATGAAGTGCTGCTCATAGTAAGGTTTCTAATTTTCTATATTCGAAATTCTTAACCTCATTCTCGTTTAACTTGTCTAGTCATTTTTCTCTCCTCATTCAATTGATTGCGCTAGAATGTTTGTCATTCCTTATAGTGAACTAGAGTTATAATTAGTCTTTCTTTGTTGATGATGCGTCTCAGGTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAACAGTAGACAGCAATTTGGTGTGCTTGCTCCTTTATCTCTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTG</genome_strand>
        <mrna_strand>TGGAAATTGAGAATGGCGACGCCGGCGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGCCAGAATCCTCAATTCACCTCTGATGCGTTAACCACTGCGATTCCGTCTAGTCCTGTTGTCTGCCTCCTTCGATTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGCTCCATTTTCGGATACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGATTGATAAAGAAAAAAGGCTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAG..............................................................................................................................ACTTTTGCAGTTTTATCTGGAGTTCATAGTTTAGTTGTCTGCTTCTTGAAGAGATTACGGGGAAAAGATGATG.........................................................................TTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTCAGGCCCTATTACAGAGTTGTCTCACCTTTGGGGCATTTTCGTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAATAGTAGGCAGCAATTTGGTGTGCTTGCTCCTTTATCACTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E567279" ref_strand="+" ref_description="SGN-E567279 [11378]">
      <seq>tggaaattgagaatggcgacgccggcgacctcaccgaactctgaatccgattccgacgttgaaacaagtccggtggcgaacccgtcacccggccagaatcctcaattcacctctgtatgcgttaaccactgcgattccgtctagtcctgttgtctgcctccttcgattcgccggtgactctgctgctggagccttcatgggctccatttttggatacggctcaggattgataaagaagaaaggctttaaaggatcctttggggaagcaggagcttcggcaaagacttttgcagttttatctggagttcatagttctagttgtctgcttcttgaagagattacggggaaaagatgatgttatcaatgctggagtagctggatgttgcactggtcttgccctaagttttccaggtgcacctcagtgccctattacagagttgtctcacctttggggcattttcgttcatcatcgaaggtcttaacaagcagcaacctgcattagctcttacatctcaccatgaatgtccaatagtagggcagcaattttggtgtgcttgctcctttatcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="66254" stop="62764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65954" g_stop="65738" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65737" i_stop="64711" i_length="1027">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64710" g_stop="64646" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="283" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64645" i_stop="64520" i_length="126">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64519" g_stop="64447" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="357" r_length="74" r_score="0.932"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64446" i_stop="64374" i_length="73">
            <donor d_prob="0.358" d_score="0.92"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64373" g_stop="64320" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="411" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64319" i_stop="63218" i_length="1102">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63217" g_stop="63064" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="570" r_length="159" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E567279" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65954" e_stop="65738"/>
          <exon e_start="64710" e_stop="64646"/>
          <exon e_start="64519" e_stop="64447"/>
          <exon e_start="64373" e_stop="64320"/>
          <exon e_start="63217" e_stop="63064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAATTGAGAATGGCGACGCCGACGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGACAGAATCCTCAATTCACCTCTG-ATGCGTTAACCACTGCGATTCCGTCTACTCCAGTCGTATGCCTCCTTAGGTTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGATCCATTTTCGGATACGGTAATTGTTTATGCAATTTTCTCCCTTAATCTGTCTATTATCGACGAGTTAATAGTTTGAATTTGGTTAGTTTGTTAGTTCAGCTGGATTTTTTGTGGAAATAGCTGAAATGAGTTACTTCTGATTGTTATTTTCGTTTGTTTTCTATACGGAGTTATCTAGAACTTATTCTTTTGTTGTTTTATGCATTTTCCTCCGCCAATATGTCTATTGTCGACTCGTTAATAGGTGCAATTTGGTTAGTTTGTTAGTTCAGCTGAATTTTTTGTGGAATAGTTGAAATGAGTTACTTCTGATTGTTAATTTTGGGATTGTGTTCTCTACGGAGTTATATGAAGCTTATGTTTTGTTGTTTTATGCATTTGACAACCGATGTCTTTTACCAGTTGTAGATATTCGTAGTAGAATTGTGTATCAACCTGTTACCTGTGTAGTGCTGCAGCTGACCTGATATAGCAGTTTTATGTTCACCTTCACCAGTTTGTTTGTTGGAGTCTCACAGTCTCTCGGGAGACGAATCTGTGCTTTTGCAAATTATTATATTTGGCTCTATTGCTATAGTCTGTTTCTCACTCGTGTATGATTGTTGGGGGGTGTACATGAACTATAGTTGTGTATATTAGTACATTATGAGTGTGACAGGAGGTGAAGGCTTCTCTGAATTCGACTACTGATTTCTCGTATCTTCTTCATCCTTTATTTTGTTTGATGACTCACTACAATAACTGAGTTGTGCGTTATCCTTTTATGGTAACCTCTAGTTTCTCCAAGTGTAATGAGCGTCAACCGCCCTATATTTTGAAGTTGTTTGTTATTTCTTCTGTTTGTTTGTCTAGTCCATATTTCCTTTAACAAATAACATCCTTCTGTTGCTACTGCCGACCTTGCATTTCGGGGAACCCTTCTTTCAATACTTTGCTTCTATAAGATTAAATAGCTTCTGGGGATCATAAATGGAATTCTTTGAGTGCAAGGGAAACATTATAAGTTGGTGATGTGCTCAATTTTGCTCAATGTGCTGTTTCAGGCTCAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAGGTATTTCAATCTTTGATCAATGCCTTAATGATATTTTTGGCAAACTACAGTATAACCACTGTTACTGCTTCCCTCTTTTAATATGTCTAATTGTGACTTGGTTCATTTCCCCTTTCTGTTGTCTAGACTTTTGCAGTTTTATCAGGAGTTCATAGTT-TAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATGGTATGACACACACTTTGAACAGCCAGATTCGGAAACATCTTTTATTTTCATTGACTTTCTCTTCTTTCTACAGTTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAGGTACTTCCAACATTTCCCACTTCATAACATAATTATCAGGACTATACCCTCCATTTTTGATTCTCAATTCCTTGAAGTCTTCTTAATTGCCATCTTACGCATTGATTAAAATGATGTTAGTACCCAATCAAGTGTAGATAGAAACAAGTACTGTCATGGTTACACATGTTTGCTGTGTTAGTGTGCCCCTTCAAACCTGAATAAAGCCATGAAGTCTAATTGTATTCATTTGATAATTGTGCAAATGGTGTAAACTTCTGTGATTATTATCGTTAGCTTAGTGTCTTCTCTAACTATCATTGTCAGTCCCAAACCTACAGTCCTTCTTTGCGGCAATATCTGAATTGGTTGGGAGAAAGTAGCATACGACTTACATGACAAATTTAAGGAGGTTTTCAGGTAGTTGTGTGGTGGTTATGGGGCATGTCATGGAAAAATTGTGCTTAACTCATTTTTTAAGAGCACAATTTAGCCTGCTAGAGCTAATAAGACCTACACTTGATGCATAAATGGAGAATTTTTAGGGCTGCAAATAATAGCTTCGGATTCTGGTTAAATAAGGTGGGAATCTGGGAGATATAAAGATGTTACCAGTCTCACCCCCATAATGAATTGGAAAAATGTGTTCGGATTAAGAGAATATGAAAGCAAGGATGTGAAAAAGTAAAGATGAGCAGGAAGGGGTGGGTGTTACAACTGTGTCTTTCCAACATGTAGATTTTTTCCAGCATGTCATTATCGTACCCATGACTAAACTCAAAAAGCAAATAGCTAGATTGGGTGATATTCATGTATTTCAACAATGTCGTGAAGTGCATATAAGTTTCAGTTATGAATTTAAATTCTCCTTATCTGCTTTATAGAAGCATCTTTCTTTGTTTTCTTTGAGTTCTTGCTTCTTGTTAAATTATATGCAAGTTCATGAAGTGCTGCTCATAGTAAGGTTTCTAATTTTCTATATTCGAAATTCTTAACCTCATTCTCGTTTAACTTGTCTAGTCATTTTTCTCTCCTCATTCAATTGATTGCGCTAGAATGTTTGTCATTCCTTATAGTGAACTAGAGTTATAATTAGTCTTTCTTTGTTGATGATGCGTCTCAGGTGCACCTCAG-GCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCA-CATGAATGT-CAACAGTA-GACAGCAA-TTTGGTGTGCTTGCTCCTTTATCTCT</genome_strand>
        <mrna_strand>TGGAAATTGAGAATGGCGACGCCGGCGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGCCAGAATCCTCAATTCACCTCTGTATGCGTTAACCACTGCGATTCCGTCTAGTCCTGTTGTCTGCCTCCTTCGATTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGCTCCATTTTTGGATACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGATTGATAAAGAAGAAAGGCTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAG..............................................................................................................................ACTTTTGCAGTTTTATCTGGAGTTCATAGTTCTAGTTGTCTGCTTCTTGAAGAGATTACGGGGAAAAGATGATG.........................................................................TTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTCAGTGCCCTATTACAGAGTTGTCTCACCTTTGGGGCATTTTCGTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACCATGAATGTCCAATAGTAGGGCAGCAATTTTGGTGTGCTTGCTCCTTTATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E286353" ref_strand="+" ref_description="SGN-E286353 [cLES-11-B3]">
      <seq>tttagattgacaaaacttagggtttagcatttggaaattgagaatggcgacgccgacgacctcaccgaactctgaatccgattccgacgttgaaacaagtccggtggcgaacccgtcacccggacagaatcctcaattcacctctgatgcgttaaccactgcgattccgtctactccagtcgtatgcctccttaggttcgccggtgactctgctgctggagccttcatgggatccattttcggatacggctcaggattaataaagaagaaaggttttaaaggatcctttggggaagcaggagcttcggcaaagacttttgcagttttatcaggagttcatagtttagttgtctgtttcttgaagagaatacggggaaaagatgatgttatcaatgctggagtagctggatgttgcactggtcttgccctaagttttccaggtgcacctcaggctctactacagagttgtctcacctttggggcattttctttcatcatcgaaggtcttaacaagcagcaacctgcattagctcttacatctcacatgaatgtcaacagtagaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="66285" stop="62794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65985" g_stop="65738" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65737" i_stop="64711" i_length="1027">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64710" g_stop="64646" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="313" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64645" i_stop="64520" i_length="126">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64519" g_stop="64447" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="386" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64446" i_stop="64374" i_length="73">
            <donor d_prob="0.358" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64373" g_stop="64320" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="440" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64319" i_stop="63218" i_length="1102">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63217" g_stop="63094" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="564" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E286353" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65985" e_stop="65738"/>
          <exon e_start="64710" e_stop="64646"/>
          <exon e_start="64519" e_stop="64447"/>
          <exon e_start="64373" e_stop="64320"/>
          <exon e_start="63217" e_stop="63094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGATTGACAAAACTTAGGGTTTAGCATTTGGAAATTGAGAATGGCGACGCCGACGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGACAGAATCCTCAATTCACCTCTGATGCGTTAACCACTGCGATTCCGTCTACTCCAGTCGTATGCCTCCTTAGGTTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGATCCATTTTCGGATACGGTAATTGTTTATGCAATTTTCTCCCTTAATCTGTCTATTATCGACGAGTTAATAGTTTGAATTTGGTTAGTTTGTTAGTTCAGCTGGATTTTTTGTGGAAATAGCTGAAATGAGTTACTTCTGATTGTTATTTTCGTTTGTTTTCTATACGGAGTTATCTAGAACTTATTCTTTTGTTGTTTTATGCATTTTCCTCCGCCAATATGTCTATTGTCGACTCGTTAATAGGTGCAATTTGGTTAGTTTGTTAGTTCAGCTGAATTTTTTGTGGAATAGTTGAAATGAGTTACTTCTGATTGTTAATTTTGGGATTGTGTTCTCTACGGAGTTATATGAAGCTTATGTTTTGTTGTTTTATGCATTTGACAACCGATGTCTTTTACCAGTTGTAGATATTCGTAGTAGAATTGTGTATCAACCTGTTACCTGTGTAGTGCTGCAGCTGACCTGATATAGCAGTTTTATGTTCACCTTCACCAGTTTGTTTGTTGGAGTCTCACAGTCTCTCGGGAGACGAATCTGTGCTTTTGCAAATTATTATATTTGGCTCTATTGCTATAGTCTGTTTCTCACTCGTGTATGATTGTTGGGGGGTGTACATGAACTATAGTTGTGTATATTAGTACATTATGAGTGTGACAGGAGGTGAAGGCTTCTCTGAATTCGACTACTGATTTCTCGTATCTTCTTCATCCTTTATTTTGTTTGATGACTCACTACAATAACTGAGTTGTGCGTTATCCTTTTATGGTAACCTCTAGTTTCTCCAAGTGTAATGAGCGTCAACCGCCCTATATTTTGAAGTTGTTTGTTATTTCTTCTGTTTGTTTGTCTAGTCCATATTTCCTTTAACAAATAACATCCTTCTGTTGCTACTGCCGACCTTGCATTTCGGGGAACCCTTCTTTCAATACTTTGCTTCTATAAGATTAAATAGCTTCTGGGGATCATAAATGGAATTCTTTGAGTGCAAGGGAAACATTATAAGTTGGTGATGTGCTCAATTTTGCTCAATGTGCTGTTTCAGGCTCAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAGGTATTTCAATCTTTGATCAATGCCTTAATGATATTTTTGGCAAACTACAGTATAACCACTGTTACTGCTTCCCTCTTTTAATATGTCTAATTGTGACTTGGTTCATTTCCCCTTTCTGTTGTCTAGACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATGGTATGACACACACTTTGAACAGCCAGATTCGGAAACATCTTTTATTTTCATTGACTTTCTCTTCTTTCTACAGTTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAGGTACTTCCAACATTTCCCACTTCATAACATAATTATCAGGACTATACCCTCCATTTTTGATTCTCAATTCCTTGAAGTCTTCTTAATTGCCATCTTACGCATTGATTAAAATGATGTTAGTACCCAATCAAGTGTAGATAGAAACAAGTACTGTCATGGTTACACATGTTTGCTGTGTTAGTGTGCCCCTTCAAACCTGAATAAAGCCATGAAGTCTAATTGTATTCATTTGATAATTGTGCAAATGGTGTAAACTTCTGTGATTATTATCGTTAGCTTAGTGTCTTCTCTAACTATCATTGTCAGTCCCAAACCTACAGTCCTTCTTTGCGGCAATATCTGAATTGGTTGGGAGAAAGTAGCATACGACTTACATGACAAATTTAAGGAGGTTTTCAGGTAGTTGTGTGGTGGTTATGGGGCATGTCATGGAAAAATTGTGCTTAACTCATTTTTTAAGAGCACAATTTAGCCTGCTAGAGCTAATAAGACCTACACTTGATGCATAAATGGAGAATTTTTAGGGCTGCAAATAATAGCTTCGGATTCTGGTTAAATAAGGTGGGAATCTGGGAGATATAAAGATGTTACCAGTCTCACCCCCATAATGAATTGGAAAAATGTGTTCGGATTAAGAGAATATGAAAGCAAGGATGTGAAAAAGTAAAGATGAGCAGGAAGGGGTGGGTGTTACAACTGTGTCTTTCCAACATGTAGATTTTTTCCAGCATGTCATTATCGTACCCATGACTAAACTCAAAAAGCAAATAGCTAGATTGGGTGATATTCATGTATTTCAACAATGTCGTGAAGTGCATATAAGTTTCAGTTATGAATTTAAATTCTCCTTATCTGCTTTATAGAAGCATCTTTCTTTGTTTTCTTTGAGTTCTTGCTTCTTGTTAAATTATATGCAAGTTCATGAAGTGCTGCTCATAGTAAGGTTTCTAATTTTCTATATTCGAAATTCTTAACCTCATTCTCGTTTAACTTGTCTAGTCATTTTTCTCTCCTCATTCAATTGATTGCGCTAGAATGTTTGTCATTCCTTATAGTGAACTAGAGTTATAATTAGTCTTTCTTTGTTGATGATGCGTCTCAGGTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAACAGTAGACA</genome_strand>
        <mrna_strand>TTTAGATTGACAAAACTTAGGGTTTAGCATTTGGAAATTGAGAATGGCGACGCCGACGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGACAGAATCCTCAATTCACCTCTGATGCGTTAACCACTGCGATTCCGTCTACTCCAGTCGTATGCCTCCTTAGGTTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGATCCATTTTCGGATACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAG..............................................................................................................................ACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATG.........................................................................TTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAACAGTAGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E265157" ref_strand="+" ref_description="SGN-E265157 [cLEI-2-G6]">
      <seq>aacttttagattgacaaaacttagggtttagcatttggaaattgagaatggcgacgccgacgacctcaccgaactctgaatccgattccgacgttgaaacaagtccggtggcgaacccgtcacccggacagaatcctcaattcacctctgatgcgttaaccactgcgattccgtctactccagtcgtatgcctccttaggttcgccggtgactctgctgctggagccttcatgggatccattttcggatacggctcaggattaataaagaagaaaggttttaaaggatcctttggggaagcaggagcttcggcaaagacttttgcagttttatcaggagttcatagtttagttgtctgtttcttgaagagaatacggggaaaagatgatgttatcaatgctggagtagctggatgttgcactggtcttgccctaagttttccaggtgcacctcaggctctactacagagttgtctcacctttggggcattttctttcatcatcgaaggtcttaacaagcagcaacctgcattagctcttacatctcacatgaatgtcaacagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="66289" stop="62798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65989" g_stop="65738" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65737" i_stop="64711" i_length="1027">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64710" g_stop="64646" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="317" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64645" i_stop="64520" i_length="126">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64519" g_stop="64447" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="390" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64446" i_stop="64374" i_length="73">
            <donor d_prob="0.358" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64373" g_stop="64320" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="444" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64319" i_stop="63218" i_length="1102">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63217" g_stop="63098" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="564" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E265157" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65989" e_stop="65738"/>
          <exon e_start="64710" e_stop="64646"/>
          <exon e_start="64519" e_stop="64447"/>
          <exon e_start="64373" e_stop="64320"/>
          <exon e_start="63217" e_stop="63098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTTAGATTGACAAAACTTAGGGTTTAGCATTTGGAAATTGAGAATGGCGACGCCGACGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGACAGAATCCTCAATTCACCTCTGATGCGTTAACCACTGCGATTCCGTCTACTCCAGTCGTATGCCTCCTTAGGTTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGATCCATTTTCGGATACGGTAATTGTTTATGCAATTTTCTCCCTTAATCTGTCTATTATCGACGAGTTAATAGTTTGAATTTGGTTAGTTTGTTAGTTCAGCTGGATTTTTTGTGGAAATAGCTGAAATGAGTTACTTCTGATTGTTATTTTCGTTTGTTTTCTATACGGAGTTATCTAGAACTTATTCTTTTGTTGTTTTATGCATTTTCCTCCGCCAATATGTCTATTGTCGACTCGTTAATAGGTGCAATTTGGTTAGTTTGTTAGTTCAGCTGAATTTTTTGTGGAATAGTTGAAATGAGTTACTTCTGATTGTTAATTTTGGGATTGTGTTCTCTACGGAGTTATATGAAGCTTATGTTTTGTTGTTTTATGCATTTGACAACCGATGTCTTTTACCAGTTGTAGATATTCGTAGTAGAATTGTGTATCAACCTGTTACCTGTGTAGTGCTGCAGCTGACCTGATATAGCAGTTTTATGTTCACCTTCACCAGTTTGTTTGTTGGAGTCTCACAGTCTCTCGGGAGACGAATCTGTGCTTTTGCAAATTATTATATTTGGCTCTATTGCTATAGTCTGTTTCTCACTCGTGTATGATTGTTGGGGGGTGTACATGAACTATAGTTGTGTATATTAGTACATTATGAGTGTGACAGGAGGTGAAGGCTTCTCTGAATTCGACTACTGATTTCTCGTATCTTCTTCATCCTTTATTTTGTTTGATGACTCACTACAATAACTGAGTTGTGCGTTATCCTTTTATGGTAACCTCTAGTTTCTCCAAGTGTAATGAGCGTCAACCGCCCTATATTTTGAAGTTGTTTGTTATTTCTTCTGTTTGTTTGTCTAGTCCATATTTCCTTTAACAAATAACATCCTTCTGTTGCTACTGCCGACCTTGCATTTCGGGGAACCCTTCTTTCAATACTTTGCTTCTATAAGATTAAATAGCTTCTGGGGATCATAAATGGAATTCTTTGAGTGCAAGGGAAACATTATAAGTTGGTGATGTGCTCAATTTTGCTCAATGTGCTGTTTCAGGCTCAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAGGTATTTCAATCTTTGATCAATGCCTTAATGATATTTTTGGCAAACTACAGTATAACCACTGTTACTGCTTCCCTCTTTTAATATGTCTAATTGTGACTTGGTTCATTTCCCCTTTCTGTTGTCTAGACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATGGTATGACACACACTTTGAACAGCCAGATTCGGAAACATCTTTTATTTTCATTGACTTTCTCTTCTTTCTACAGTTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAGGTACTTCCAACATTTCCCACTTCATAACATAATTATCAGGACTATACCCTCCATTTTTGATTCTCAATTCCTTGAAGTCTTCTTAATTGCCATCTTACGCATTGATTAAAATGATGTTAGTACCCAATCAAGTGTAGATAGAAACAAGTACTGTCATGGTTACACATGTTTGCTGTGTTAGTGTGCCCCTTCAAACCTGAATAAAGCCATGAAGTCTAATTGTATTCATTTGATAATTGTGCAAATGGTGTAAACTTCTGTGATTATTATCGTTAGCTTAGTGTCTTCTCTAACTATCATTGTCAGTCCCAAACCTACAGTCCTTCTTTGCGGCAATATCTGAATTGGTTGGGAGAAAGTAGCATACGACTTACATGACAAATTTAAGGAGGTTTTCAGGTAGTTGTGTGGTGGTTATGGGGCATGTCATGGAAAAATTGTGCTTAACTCATTTTTTAAGAGCACAATTTAGCCTGCTAGAGCTAATAAGACCTACACTTGATGCATAAATGGAGAATTTTTAGGGCTGCAAATAATAGCTTCGGATTCTGGTTAAATAAGGTGGGAATCTGGGAGATATAAAGATGTTACCAGTCTCACCCCCATAATGAATTGGAAAAATGTGTTCGGATTAAGAGAATATGAAAGCAAGGATGTGAAAAAGTAAAGATGAGCAGGAAGGGGTGGGTGTTACAACTGTGTCTTTCCAACATGTAGATTTTTTCCAGCATGTCATTATCGTACCCATGACTAAACTCAAAAAGCAAATAGCTAGATTGGGTGATATTCATGTATTTCAACAATGTCGTGAAGTGCATATAAGTTTCAGTTATGAATTTAAATTCTCCTTATCTGCTTTATAGAAGCATCTTTCTTTGTTTTCTTTGAGTTCTTGCTTCTTGTTAAATTATATGCAAGTTCATGAAGTGCTGCTCATAGTAAGGTTTCTAATTTTCTATATTCGAAATTCTTAACCTCATTCTCGTTTAACTTGTCTAGTCATTTTTCTCTCCTCATTCAATTGATTGCGCTAGAATGTTTGTCATTCCTTATAGTGAACTAGAGTTATAATTAGTCTTTCTTTGTTGATGATGCGTCTCAGGTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAACAGTA</genome_strand>
        <mrna_strand>AACTTTTAGATTGACAAAACTTAGGGTTTAGCATTTGGAAATTGAGAATGGCGACGCCGACGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGACAGAATCCTCAATTCACCTCTGATGCGTTAACCACTGCGATTCCGTCTACTCCAGTCGTATGCCTCCTTAGGTTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGATCCATTTTCGGATACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAG..............................................................................................................................ACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATG.........................................................................TTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAACAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E460273" ref_strand="+" ref_description="SGN-E460273 [cPRO-30-B9]">
      <seq>tggaaattgagaatggcgacgccggcgacctcaccgaactctgaatccgattccgacgttgaaacaagtccggtggcgaacccgtcacccggccagaatcctcaattcacctctgatgcgttaaccactgcgattccgtctagtcctgttgtctgcctccttcgattcgccggtgactctgctgctggagccttcatgggctccattttcggatacggctcaggattgataaagaaaaaaggctttaaaggatcctttggggaagcaggagcttcggcaaagacttttgcagttttatctggagttcatagtttagttgtctgcttcttgaagagattacggggaaaagatgatgttatcaatgctggagtagctggatgttgcactggtcttgccctaagttttccaggtgcacctcaggccctattacagagttgtctcacctttggggcattttcgttcatcatcgaaggtcttaacagcagcaacctgcattagctcttacatctcacatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="66254" stop="62809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65954" g_stop="65738" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65737" i_stop="64711" i_length="1027">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64710" g_stop="64646" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="282" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64645" i_stop="64520" i_length="126">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64519" g_stop="64447" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="355" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64446" i_stop="64374" i_length="73">
            <donor d_prob="0.358" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64373" g_stop="64320" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="409" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64319" i_stop="63218" i_length="1102">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63217" g_stop="63109" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="517" r_length="108" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E460273" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65954" e_stop="65738"/>
          <exon e_start="64710" e_stop="64646"/>
          <exon e_start="64519" e_stop="64447"/>
          <exon e_start="64373" e_stop="64320"/>
          <exon e_start="63217" e_stop="63109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAATTGAGAATGGCGACGCCGACGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGACAGAATCCTCAATTCACCTCTGATGCGTTAACCACTGCGATTCCGTCTACTCCAGTCGTATGCCTCCTTAGGTTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGATCCATTTTCGGATACGGTAATTGTTTATGCAATTTTCTCCCTTAATCTGTCTATTATCGACGAGTTAATAGTTTGAATTTGGTTAGTTTGTTAGTTCAGCTGGATTTTTTGTGGAAATAGCTGAAATGAGTTACTTCTGATTGTTATTTTCGTTTGTTTTCTATACGGAGTTATCTAGAACTTATTCTTTTGTTGTTTTATGCATTTTCCTCCGCCAATATGTCTATTGTCGACTCGTTAATAGGTGCAATTTGGTTAGTTTGTTAGTTCAGCTGAATTTTTTGTGGAATAGTTGAAATGAGTTACTTCTGATTGTTAATTTTGGGATTGTGTTCTCTACGGAGTTATATGAAGCTTATGTTTTGTTGTTTTATGCATTTGACAACCGATGTCTTTTACCAGTTGTAGATATTCGTAGTAGAATTGTGTATCAACCTGTTACCTGTGTAGTGCTGCAGCTGACCTGATATAGCAGTTTTATGTTCACCTTCACCAGTTTGTTTGTTGGAGTCTCACAGTCTCTCGGGAGACGAATCTGTGCTTTTGCAAATTATTATATTTGGCTCTATTGCTATAGTCTGTTTCTCACTCGTGTATGATTGTTGGGGGGTGTACATGAACTATAGTTGTGTATATTAGTACATTATGAGTGTGACAGGAGGTGAAGGCTTCTCTGAATTCGACTACTGATTTCTCGTATCTTCTTCATCCTTTATTTTGTTTGATGACTCACTACAATAACTGAGTTGTGCGTTATCCTTTTATGGTAACCTCTAGTTTCTCCAAGTGTAATGAGCGTCAACCGCCCTATATTTTGAAGTTGTTTGTTATTTCTTCTGTTTGTTTGTCTAGTCCATATTTCCTTTAACAAATAACATCCTTCTGTTGCTACTGCCGACCTTGCATTTCGGGGAACCCTTCTTTCAATACTTTGCTTCTATAAGATTAAATAGCTTCTGGGGATCATAAATGGAATTCTTTGAGTGCAAGGGAAACATTATAAGTTGGTGATGTGCTCAATTTTGCTCAATGTGCTGTTTCAGGCTCAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAGGTATTTCAATCTTTGATCAATGCCTTAATGATATTTTTGGCAAACTACAGTATAACCACTGTTACTGCTTCCCTCTTTTAATATGTCTAATTGTGACTTGGTTCATTTCCCCTTTCTGTTGTCTAGACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATGGTATGACACACACTTTGAACAGCCAGATTCGGAAACATCTTTTATTTTCATTGACTTTCTCTTCTTTCTACAGTTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAGGTACTTCCAACATTTCCCACTTCATAACATAATTATCAGGACTATACCCTCCATTTTTGATTCTCAATTCCTTGAAGTCTTCTTAATTGCCATCTTACGCATTGATTAAAATGATGTTAGTACCCAATCAAGTGTAGATAGAAACAAGTACTGTCATGGTTACACATGTTTGCTGTGTTAGTGTGCCCCTTCAAACCTGAATAAAGCCATGAAGTCTAATTGTATTCATTTGATAATTGTGCAAATGGTGTAAACTTCTGTGATTATTATCGTTAGCTTAGTGTCTTCTCTAACTATCATTGTCAGTCCCAAACCTACAGTCCTTCTTTGCGGCAATATCTGAATTGGTTGGGAGAAAGTAGCATACGACTTACATGACAAATTTAAGGAGGTTTTCAGGTAGTTGTGTGGTGGTTATGGGGCATGTCATGGAAAAATTGTGCTTAACTCATTTTTTAAGAGCACAATTTAGCCTGCTAGAGCTAATAAGACCTACACTTGATGCATAAATGGAGAATTTTTAGGGCTGCAAATAATAGCTTCGGATTCTGGTTAAATAAGGTGGGAATCTGGGAGATATAAAGATGTTACCAGTCTCACCCCCATAATGAATTGGAAAAATGTGTTCGGATTAAGAGAATATGAAAGCAAGGATGTGAAAAAGTAAAGATGAGCAGGAAGGGGTGGGTGTTACAACTGTGTCTTTCCAACATGTAGATTTTTTCCAGCATGTCATTATCGTACCCATGACTAAACTCAAAAAGCAAATAGCTAGATTGGGTGATATTCATGTATTTCAACAATGTCGTGAAGTGCATATAAGTTTCAGTTATGAATTTAAATTCTCCTTATCTGCTTTATAGAAGCATCTTTCTTTGTTTTCTTTGAGTTCTTGCTTCTTGTTAAATTATATGCAAGTTCATGAAGTGCTGCTCATAGTAAGGTTTCTAATTTTCTATATTCGAAATTCTTAACCTCATTCTCGTTTAACTTGTCTAGTCATTTTTCTCTCCTCATTCAATTGATTGCGCTAGAATGTTTGTCATTCCTTATAGTGAACTAGAGTTATAATTAGTCTTTCTTTGTTGATGATGCGTCTCAGGTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAA</genome_strand>
        <mrna_strand>TGGAAATTGAGAATGGCGACGCCGGCGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGCCAGAATCCTCAATTCACCTCTGATGCGTTAACCACTGCGATTCCGTCTAGTCCTGTTGTCTGCCTCCTTCGATTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGCTCCATTTTCGGATACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGATTGATAAAGAAAAAAGGCTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAG..............................................................................................................................ACTTTTGCAGTTTTATCTGGAGTTCATAGTTTAGTTGTCTGCTTCTTGAAGAGATTACGGGGAAAAGATGATG.........................................................................TTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTCAGGCCCTATTACAGAGTTGTCTCACCTTTGGGGCATTTTCGTTCATCATCGAAGGTCTTAAC-AGCAGCAACCTGCATTAGCTCTTACATCTCACATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E276297" ref_strand="+" ref_description="SGN-E276297 [cLEN-21-O2]">
      <seq>actttgagattgacaaaacttagggtttagcatttggaaattgacaatggcgacgccgacgacctcgccgaactctgaatccgattccgacggtgagacaagtacggtggcgaacccgtcacccggacagaatcctcaattcacctctgatgcgtcaaccactgcgattccgtctactccagtcgtatgcctgcttaggttcgccggtgactctgctgctggagccttcatgggatccatttctgatacggctgagggttgataaatacgaaaggttttaaaggatcctttggggaagcaggagcttccgcaaagactttggcagttttatcaggagttcatagattagtcgactgtggctagaagagagtacggggaaaagatgatgttctcaatgctggagtagctggatgtagcactggtcttgccctaagttttccaggtgcacctcaggctctactacagaggtgtctcacctttggggcattatctttcatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="66288" stop="62860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65988" g_stop="65738" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65737" i_stop="64711" i_length="1027">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.963" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64710" g_stop="64646" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="315" r_length="65" r_score="0.908"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64645" i_stop="64520" i_length="126">
            <donor d_prob="0.984" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64519" g_stop="64447" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="388" r_length="73" r_score="0.890"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64446" i_stop="64374" i_length="73">
            <donor d_prob="0.358" d_score="0.86"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64373" g_stop="64320" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="442" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64319" i_stop="63218" i_length="1102">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63217" g_stop="63160" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="500" r_length="58" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E276297" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65988" e_stop="65738"/>
          <exon e_start="64710" e_stop="64646"/>
          <exon e_start="64519" e_stop="64447"/>
          <exon e_start="64373" e_stop="64320"/>
          <exon e_start="63217" e_stop="63160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTAGATTGACAAAACTTAGGGTTTAGCATTTGGAAATTGAGAATGGCGACGCCGACGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGACAGAATCCTCAATTCACCTCTGATGCGTTAACCACTGCGATTCCGTCTACTCCAGTCGTATGCCTCCTTAGGTTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGATCCATTTTCGGATACGGTAATTGTTTATGCAATTTTCTCCCTTAATCTGTCTATTATCGACGAGTTAATAGTTTGAATTTGGTTAGTTTGTTAGTTCAGCTGGATTTTTTGTGGAAATAGCTGAAATGAGTTACTTCTGATTGTTATTTTCGTTTGTTTTCTATACGGAGTTATCTAGAACTTATTCTTTTGTTGTTTTATGCATTTTCCTCCGCCAATATGTCTATTGTCGACTCGTTAATAGGTGCAATTTGGTTAGTTTGTTAGTTCAGCTGAATTTTTTGTGGAATAGTTGAAATGAGTTACTTCTGATTGTTAATTTTGGGATTGTGTTCTCTACGGAGTTATATGAAGCTTATGTTTTGTTGTTTTATGCATTTGACAACCGATGTCTTTTACCAGTTGTAGATATTCGTAGTAGAATTGTGTATCAACCTGTTACCTGTGTAGTGCTGCAGCTGACCTGATATAGCAGTTTTATGTTCACCTTCACCAGTTTGTTTGTTGGAGTCTCACAGTCTCTCGGGAGACGAATCTGTGCTTTTGCAAATTATTATATTTGGCTCTATTGCTATAGTCTGTTTCTCACTCGTGTATGATTGTTGGGGGGTGTACATGAACTATAGTTGTGTATATTAGTACATTATGAGTGTGACAGGAGGTGAAGGCTTCTCTGAATTCGACTACTGATTTCTCGTATCTTCTTCATCCTTTATTTTGTTTGATGACTCACTACAATAACTGAGTTGTGCGTTATCCTTTTATGGTAACCTCTAGTTTCTCCAAGTGTAATGAGCGTCAACCGCCCTATATTTTGAAGTTGTTTGTTATTTCTTCTGTTTGTTTGTCTAGTCCATATTTCCTTTAACAAATAACATCCTTCTGTTGCTACTGCCGACCTTGCATTTCGGGGAACCCTTCTTTCAATACTTTGCTTCTATAAGATTAAATAGCTTCTGGGGATCATAAATGGAATTCTTTGAGTGCAAGGGAAACATTATAAGTTGGTGATGTGCTCAATTTTGCTCAATGTGCTGTTTCAGGCTCAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAGGTATTTCAATCTTTGATCAATGCCTTAATGATATTTTTGGCAAACTACAGTATAACCACTGTTACTGCTTCCCTCTTTTAATATGTCTAATTGTGACTTGGTTCATTTCCCCTTTCTGTTGTCTAGACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATGGTATGACACACACTTTGAACAGCCAGATTCGGAAACATCTTTTATTTTCATTGACTTTCTCTTCTTTCTACAGTTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAGGTACTTCCAACATTTCCCACTTCATAACATAATTATCAGGACTATACCCTCCATTTTTGATTCTCAATTCCTTGAAGTCTTCTTAATTGCCATCTTACGCATTGATTAAAATGATGTTAGTACCCAATCAAGTGTAGATAGAAACAAGTACTGTCATGGTTACACATGTTTGCTGTGTTAGTGTGCCCCTTCAAACCTGAATAAAGCCATGAAGTCTAATTGTATTCATTTGATAATTGTGCAAATGGTGTAAACTTCTGTGATTATTATCGTTAGCTTAGTGTCTTCTCTAACTATCATTGTCAGTCCCAAACCTACAGTCCTTCTTTGCGGCAATATCTGAATTGGTTGGGAGAAAGTAGCATACGACTTACATGACAAATTTAAGGAGGTTTTCAGGTAGTTGTGTGGTGGTTATGGGGCATGTCATGGAAAAATTGTGCTTAACTCATTTTTTAAGAGCACAATTTAGCCTGCTAGAGCTAATAAGACCTACACTTGATGCATAAATGGAGAATTTTTAGGGCTGCAAATAATAGCTTCGGATTCTGGTTAAATAAGGTGGGAATCTGGGAGATATAAAGATGTTACCAGTCTCACCCCCATAATGAATTGGAAAAATGTGTTCGGATTAAGAGAATATGAAAGCAAGGATGTGAAAAAGTAAAGATGAGCAGGAAGGGGTGGGTGTTACAACTGTGTCTTTCCAACATGTAGATTTTTTCCAGCATGTCATTATCGTACCCATGACTAAACTCAAAAAGCAAATAGCTAGATTGGGTGATATTCATGTATTTCAACAATGTCGTGAAGTGCATATAAGTTTCAGTTATGAATTTAAATTCTCCTTATCTGCTTTATAGAAGCATCTTTCTTTGTTTTCTTTGAGTTCTTGCTTCTTGTTAAATTATATGCAAGTTCATGAAGTGCTGCTCATAGTAAGGTTTCTAATTTTCTATATTCGAAATTCTTAACCTCATTCTCGTTTAACTTGTCTAGTCATTTTTCTCTCCTCATTCAATTGATTGCGCTAGAATGTTTGTCATTCCTTATAGTGAACTAGAGTTATAATTAGTCTTTCTTTGTTGATGATGCGTCTCAGGTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCAT</genome_strand>
        <mrna_strand>ACTTTGAGATTGACAAAACTTAGGGTTTAGCATTTGGAAATTGACAATGGCGACGCCGACGACCTCGCCGAACTCTGAATCCGATTCCGACGGTGAGACAAGTACGGTGGCGAACCCGTCACCCGGACAGAATCCTCAATTCACCTCTGATGCGTCAACCACTGCGATTCCGTCTACTCCAGTCGTATGCCTGCTTAGGTTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGATCCA-TTTCTGATACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGGGTTGATAAATACGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCCGCAAAG..............................................................................................................................ACTTTGGCAGTTTTATCAGGAGTTCATAGATTAGTCGACTGTGGCTAGAAGAGAGTACGGGGAAAAGATGATG.........................................................................TTCTCAATGCTGGAGTAGCTGGATGTAGCACTGGTCTTGCCCTAAGTTTTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTCAGGCTCTACTACAGAGGTGTCTCACCTTTGGGGCATTATCTTTCATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E570714" ref_strand="+" ref_description="SGN-E570714 [15342]">
      <seq>cttagaacttttagattgacaaaaacttagggtttagcatttggaaattgagaatggcgacgccggcgacctcaccgaactctgaatccgattccgacgttgaaacaagatccggntcggcganaacccgtcacccggccagaatcctcaattcacctctgatgcgttaaccactgcgattccgtctagtcctgttgtctgcctccttcgattcgccggtgactctgctgctggagccttcatgggctccatttttggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="66294" stop="65441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65994" g_stop="65741" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E570714" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>254</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E570714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65994" e_stop="65741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGAACTTTTAGATTGAC-AAAACTTAGGGTTTAGCATTTGGAAATTGAGAATGGCGACGCCGACGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAG-TCCGG-T-GGCG--AACCCGTCACCCGGACAGAATCCTCAATTCACCTCTGATGCGTTAACCACTGCGATTCCGTCTACTCCAGTCGTATGCCTCCTTAGGTTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGATCCATTTTCGGAT</genome_strand>
        <mrna_strand>CTTAGAACTTTTAGATTGACAAAAACTTAGGGTTTAGCATTTGGAAATTGAGAATGGCGACGCCGGCGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAGATCCGGNTCGGCGANAACCCGTCACCCGGCCAGAATCCTCAATTCACCTCTGATGCGTTAACCACTGCGATTCCGTCTAGTCCTGTTGTCTGCCTCCTTCGATTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGCTCCATTTTTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E747199" ref_strand="+" ref_description="SGN-E747199 [GI|27462171]">
      <seq>cttagttagaatgtcagaaaacagattcttaggcaacatttctgcgtcttcgttccgaaatctacttccaaaatcagtttcaactaagaaaaagttgagttcaagtagatttaagcataaaatgaacagtgaaaatgttgctcctatagatcccaacgttcagatcagtgatccaccgttgttacctacgagttcgatacttaaaaaaaccgtcttgaagacgattgatagtgatgtatcgacagaactcaccagatctgttgcacaggaacaaacatcagaagctcctgatccaccagttaaggttgttgcaaggattagacctgctaatggtattgagagtggaacccaagcggttcgcaaagcttctgatacctcagtgtgtgttgctgatagaaagtttgactttgacatggtttttggttcaaattcgaatcaggaagatgtatttcaatcggttggtgcccctttagttaaggatgcattggcaggttacaacacttctctcttagcttatggacagactggaagtggcaagacttatacaatgtggggacctcctagttccattgttgaagttccatcacctaatggtcttcaaggcattgtgccgcgcatttttcagacattgttttctagtatacaaaaagagcaagagaactctgaaggtaaacagataaattaccagtgtcgttgctcgttcctagagatatatgatgaacacattggggatctacttgatcctacacagagaaacttaaagataatggatgatccaagagttggattctatgttgagaacataactgaggaatatgtgtctacctacgaggatgtatcacaaatgttgattaagggtctttcaagtagaaaagttggatcaacgagcatcaattcgaagagttctaggtcccatattgtttttacctgcgtcattgagtcctggtgcaaggagtcctcatcaacgtgttttggtagctcaaagatgagcagaatgagccttgttgatcttgctggatttgacaaaaatatacctgatgatgccggtaaacagcttgttaaggaagggaagtatgtaaagaagtccacatcactgctcgggcatttggttaatgtcctctctgaaaggagtcagtccaggaaacttgaggatgtttcgtacagcagttccactttgactcatttaatgagagaatcacttggtgggaatgctaaactctccgtcatatgtgctatcagcccagaaaacaagcataatagtgaaacagtaagcactctgagatttgggaaacgggttaaactcacaccaaatgagccattggtaaatgaaataacagaagacgatgttaatggcctgagtgatcagattcgccaattgaaggaagagcttataagagctcggtcaagtgcaagcatttcagtcggaagcaactatggatccttcagaggaccaaatgtacgtgaaagtttgaatcagttgagagtgagccttaaccgttcactcatcttacctgacatatataatgagcgtgaagaagaagaggttcacataaatgaggatgatataaaagaactacagctccagatcaataacttacgtggttcacgtggaaataactcaaactctctcaagtattcatctggagaaagtgaacactatctcagctgttcagaagaaagtgaaggtgaagaaattaactcagatgagatactggaggagacccttgatgatgctgaccaagagatggaaacgatgcagcctgaatactgtagcagcatctcaataggcccatcccgccattctgctgatcttcctggcccggtgttatctgagtccccaaagtttcggaacatgcagaggaagagcttaattatctccggtgaagataatattcaaaggtccttcaaaagttctgaattggctttcctggcacagaaaccagaccttgtccagtcttctttgaggtccagcagaatatttcctgggccaactgaatccttggctgccagtctacatagaggactagagatcattgattatcaccaaaggaattccgcatcaaataaatctttggtttccttctcttttgaacatttggcagtgaacccaagcccaatgtcaaatggtaaggccaatgcttctattcaaacatcatcggaagagggacaatcttctccttttgtagccgctacattcctgtgtccaaagtgcaagacgaaagcaacatcctctagtgttgttaaggatagcactgggacatggatggtttccatggaagggacaagtacggatcaagattcggagaaagttttgttccaagctctagagagagagaagcagcttgaaagtgtatgcaaggatcaagcagacaaaattgagcagctaaaccaacgactagcccgctgtaagtgcacacaagaacagagttctttagttgattgtggcaaggatgtcgttgatctccacgacaatgagaatcaagcttcaataatctatcagaatgggagtcaatcacccaacatcccaaagctcctgaaatgggacgatgaaagtcctgagcctgaagctgcaggagagaagtatgaaactaaagaaattcagggcaatgtcgaaaacagtggcgggaaaaaaatgtttgatatggctgagagagaagcactacttaaagaaattggaggcctaagggcccaattgaagtcagatggagcctccacaaacaaatcacttgaaagaaccagatcctctttgttagcacaatcaatgcagctgagaaaaagtggtgtatatgctactacgggttctggtgaagaacttgagaaggaaagagaaagatggactgagatggaaagtgagtggatttgtctaactgatgagcttagaattgatcttgaggcttatcgccagcgtgcagaaaaggtggcaatggaattaatgttggagaagaaatgcacggatgagttggatgatgccctcaaaagatccgtctttgggcaagccagaataattgagcattacgcggaattacaggagaagtacaacgacttagctgagaagcataagttgatcttgcaagggatacaagatgtgaaaaatgctgcagcaaaagcaggaaagaaaggccatggtgctcgtttcgccaagtctctcgctgcagagctgtcagctttgagagtggaaagggaaagagagagggaaatgctgaaaaaggagaataaaagcttgagagttcaacttaaagacactgctgaagctgttcatgcagccggagaacttcttgttagattgagagaagcggaggaaacagcttcacttgctgaggagaactttacacaatcaaaggaagagaatgagagattgaagaagcaaatagagaagctgaagagaaaacataagatggagatgataacaatgaaacagtatcttgctgaaagccgattgccagaagcagcgttgagaccgcctatttacaggcaagactctgatgtagcaaacaatgacaacaacaacaccatccaacattctgagtatgatgatgatcaatcatggagagcagaatttggcgctatttatcaagaacacatatgagccatgtttgattgaactatggaaacacgtgaagaccctgctcgggactttgctgaaaaaaacctgctcatcttgatcacaccttagtgttattcagggatgaattggctgtattcttattgattttatcattcttttgaaacttgattgaccagatttgacatttgttgtgagctgtttcttcagcttgttaataataatgcttatgtatcctaaaaagtcattcaactttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="73071" stop="66273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72771" g_stop="72466" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72465" i_stop="72227" i_length="239">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72226" g_stop="72092" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="439" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72091" i_stop="71617" i_length="475">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71616" g_stop="71533" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="523" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71532" i_stop="71450" i_length="83">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71449" g_stop="71324" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="649" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71323" i_stop="71241" i_length="83">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.682" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71240" g_stop="71181" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="709" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71180" i_stop="71098" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71097" g_stop="71044" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="763" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71043" i_stop="70948" i_length="96">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70947" g_stop="70855" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="856" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="70854" i_stop="70724" i_length="131">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="70723" g_stop="70628" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="857" r_stop="952" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="70627" i_stop="70447" i_length="181">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="70446" g_stop="70298" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="953" r_stop="1101" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="70297" i_stop="69958" i_length="340">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="69957" g_stop="69808" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1102" r_stop="1251" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="69807" i_stop="69587" i_length="221">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="69586" g_stop="69457" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1252" r_stop="1381" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="69456" i_stop="69366" i_length="91">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="69365" g_stop="68451" g_length="915"/>
          <reference_exon_boundary r_type="cDNA" r_start="1382" r_stop="2296" r_length="915" r_score="0.992"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="68450" i_stop="68358" i_length="93">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="68357" g_stop="68259" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="2297" r_stop="2395" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="68258" i_stop="68171" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="68170" g_stop="68036" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="2396" r_stop="2530" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="68035" i_stop="67947" i_length="89">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="67946" g_stop="67158" g_length="789"/>
          <reference_exon_boundary r_type="cDNA" r_start="2531" r_stop="3319" r_length="789" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="67157" i_stop="67073" i_length="85">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="67072" g_stop="66562" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="3320" r_stop="3830" r_length="511" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="3831" polyA_stop="3841"/>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E747199" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>3832</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72771" e_stop="72466"/>
          <exon e_start="72226" e_stop="72092"/>
          <exon e_start="71616" e_stop="71533"/>
          <exon e_start="71449" e_stop="71324"/>
          <exon e_start="71240" e_stop="71181"/>
          <exon e_start="71097" e_stop="71044"/>
          <exon e_start="70947" e_stop="70855"/>
          <exon e_start="70723" e_stop="70628"/>
          <exon e_start="70446" e_stop="70298"/>
          <exon e_start="69957" e_stop="69808"/>
          <exon e_start="69586" e_stop="69457"/>
          <exon e_start="69365" e_stop="68451"/>
          <exon e_start="68357" e_stop="68259"/>
          <exon e_start="68170" e_stop="68036"/>
          <exon e_start="67946" e_stop="67158"/>
          <exon e_start="67072" e_stop="66562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGTTCAGAAATGTCAGAAAACAGATTCTTAGGCAACATTTCTGCGTCTTCGTTCCGAAATCTACTTCCAAAATCAGTTTCAACTAAGAAAAAGTTGAGTTCAAGTAGATTTAAGCATAAAATGAACAGTGAAAATGTTGCTCCTATAGATCCCAACGTTCAGATCAGTGATCCACCGTTGTTACCTACGAGTTCGATACTTAAAAAAACCGTCTTGAAGACGATTGATAGTGATGTATCGACAGAACTCACCAGATCTGTTGCACAGGAACAAACATCAGAAGCTCCTGATCCACCAGTTAAGGTAAAATGATAAATCTTTGCTGATTTTAGTTAGGTGGTCGAGGAAAGAGGTGAATTCAGGATATAAACTTAATACTGATATAATTATGGGTTCAAATCTAGTATTTATTGAGATTTCAATAGGGTTTTATGGACTGTGGGTTTGTCTATTTCCTTGTTTTGCTAAATTTCTTCCATTTTTGTTGTGCTTTTTGAGCTATGAATGATCTGTAATTGCTCTGTATGTTGGGTGTTTGACAGGTTGTTGCAAGGATTAAACCTGCTAATGGTATTGAGAGTGGAACCCAAGCGGTTCGCAAAGCTTCTGATACCTCAGTGTGTGTTGCTGATAGAAAGTTTAACTTTGACATGGTTTTTGGTTCAAATTCGAATCAGGTTGGTAAATTTAACTCCCAAGTTTCTGCCTTTTCAAGCTTTTTTGAATTAATTGTGCTTTTAGATGGTGCTTAGTTCTTTTGGTGTCCACAGTCCTTTTCATGTTAGTTTCTGATGTTCGTAATTAAGGAGGGGGGACTTTGCTTAGAGTTGAGCGATGGAAGACAATAGAGGCAATAGCTTATAGTGACTAGTTAGAATTGATTTAATCGTTGTTACGCTTACATTAGGTCAAATAGAGGTAAGTGAGTGATCTAGACAGAATTATTAATATATAGAGAAGTATTAAATATACCTGAAGAGATCCAAACAGAATTATTAATATATAGAGGGATACATATAGTCCACCCCTACTAGTTTGGATCAAGGCTTCTTTGGTTTCATTAAAAAGGGTCTGATTTGTTGAATGCTGATGTTACAAGGTTCATATAATAGATGGATTTTTCTTATTTAAGCTGTTTTCTCATGATAACAGGAAGATGTATTTCAATCGGTTGGTGCCCCTTTAGTTAAGGATGCATTGGCAGGTTACAACACTTCTCTCTTAGCTTATGGACAGGTTAGTTTTACTTGTAATGTTTCATTTTCATTGTGTCACAATAAATCTGTATCTGATGGCTGAAGTGATTCTTTTGGTGATAGACTGGAAGTGGCAAGACTTATACAATGTGGGGACCTCCTAGTTCCATTGTTGAAGTTCCATCACCTAATGGTCTTCAAGGCATTGTGCCGCGCATTTTTCAGACATTGTTTTCTAGTATACAAAAAGTAAGTTCCTTCTCCATTTAAAAGTTAGAACTGAAGACTGTCAAGACATTTCTGATATTTAGATAATTTCCTTGATTGATCAGGAGCAAGAGAACTCTGAAGGTAAACAGATAAATTACCAGTGTCGTTGCTCGTTCCTAGAGGTATGTATTCTAAATATTTACCCTTGCTCACATATGATGCATACTCGTGCCAAGTCTAATTATGTCACACTTCTTCTTTCCAGATATATGATGAACACATTGGGGATCTACTTGATCCTACACAGAGAAACTTAAAGGTTAGTTGCAAATCTTGGAACACGATATTGTTCTAGGCGCTATTCACTTTATGAAAAAACAGAATGCTGAAGATTCGTCCTTTTTGGTTATTCCAGATAATGGATGATCCAAGAGTTGGATTCTATGTTGAGAACATAACTGAGGAATATGTGTCTACCTACGAGGATGTATCACAAATGTTGATTAAGGTGCACAAACGCTTTTCCTATCATAATACTTTGAACTTTCTAGTAGTTCTGTCAATGCAATAAAATGAGATAAGAATGCTTTAGCTTTCACTTATCTTATTGTTTCTTATTCTTTTGCATTTGAATTGTAGGGTCTTTCAAGTAGAAAAGTTGGATCAACGAGCATCAATTCGAAGAGTTCTAGGTCCCATATTGTTTTTACCTGCGTCATTGAGTCCTGGTGCAAGGTATCTTCCAACTATGAAATCTGGTTTTTTGTGTGTTTTGTCAGGAAGAAATTTTATACATTCATCTTCTTATCTAACCCCGGAGTTCATATTACCGTCTAATTTCTCACTATAAAGTTTTATCGTCATAGTTGAAGACCTTTAATCTTTTCAAGTGTCTAATTAAACAATATTACTTCAGGAGTCCTCATCAACGTGTTTTGGTAGCTCAAAGATGAGCAGAATGAGCCTTGTTGATCTTGCTGGATTTGACAAAAATATACCTGATGATGCCGGTAAACAGCTTGTTAAGGAAGGGAAGTATGTAAAGAAGTCCACATCACTGCTCGGGTATGATTTATGCATACATTTTACTGTTTGTTGTATATTGTAGTTTTTTGTCTTTGCGCTCAAACTTTCTTACATATTATATTGCCAACATTGTTGCCTTAAGTTTCAAAATGTTTGCATTCTCAAAGTGATGCCTTCATGCCGTATGCTAAGCCAAAAGTGTAGGCAGAGGACTTGATGAGTGACTCTAAGGAAGGAGTTAATAGTCTGTTCTGTTCATGAATTAGCTCATAAATGTTAAATCTACTTTAAAAAATGGCCATATTTTCTGTGAAATCTATTTATCATTGATGTATAACACAAGTGTTACTCTAGTTAATTGTTTCTTAAACTGGTGCAGGCATTTGGTTAATGTCCTCTCTGAAAGGAGTCAGTCCAGGAAACTTGAGGATGTTTCGTACAGCAGTTCCACTTTGACTCATTTAATGAGAGAATCACTTGGTGGGAATGCTAAACTCTCCGTCATATGTGCTATCAGCCCAGAAAACAAGTATTTCCCTTTTCAACTCGAGATGCTTCATGCTTTTCAATATTACGGAAATTCTGTTACCTATGACGTGCATGAAAAACTAGCACATTAGATGGTTAAAATTGTAAATGACTTTGGTGTAAGTGAACCTGAATGAGGGTCATATCATCTGGACCAACTTGCATACGTAACATCAGTTTCTTCTCTTTTAAATGTCACTAATTCGAGGAACATTTATGCAGGCATAATAGTGAAACAGTAAGCACTCTGAGATTTGGGAAACGGGTTAAACTCACACCAAATGAGCCATTGGTAAATGAAATAACAGAAGACGATGTTAATGGCCTGAGTGATCAGATTCGCCAATTGAAGGTACTTTCACTTGTCTCACTGGGGCAACTGCTCATCTGATTCGTTTAGAGCATAAACTTTATCTGACTTTATGCTTTTATATTGCTTACAGGAAGAGCTTATAAGAGCTCGGTCAAGTGCAAGCATTTCAGTCGGAAGCAACTATGGATCCTTCAGAGGACCAAATGTACGTGAAAGTTTGAATCAGTTGAGAGTGAGCCTTAACCGTTCACTCATCTTACCTGACATAGATAATGAGCGTGAAGAAGAAGAGGTTCACATAAATGAGGATGATATAAAAGAACTACAGCTCCAGATCAATAACTTACGTGGTTCACGTGGAAATAACTCAAACTCTCTCAAGTATTCATCTGGAGAAAGTGAACACTATCTCAGCTGTTCAGAAGAAAGTGAAGGTGAAGAAATTAACTCAGATGAGATACTGGAGGAGACCCTTGATGATGCTGACCAAGAGATGGAAACGATGCAGCCTGAATACTGTAGCAGCATCTCAATAGGCCCATCCCGCCATTCTGCTGATCTTCCTGGCCCGGTGTTATCTGAGTCCCCAAAGTTTCGGAACATGCAGAGGAAGAGCTTAATTATCTCCGGTGAAGATAATATTCAAAGTTCCTCCAAAAGTTCTGAATTGCCTTCCCTGCCACAGAAACAAGACCTTGTCCAGTCTTCTTTGAGGTCCAGCAGAATATTTCCTGGGCCAACTGAATCCTTGGCTGCCAGTCTACATAGAGGACTAGAGATCATTGATTATCACCAAAGGAATTCCGCATCAAATAAATCTTTGGTTTCCTTCTCTTTTGAACATTTGGCAGTGAACCCAAGCCCAATGTCAAATGGTAAGGCCAATGCTTCTATTCAAACATCATCGGAAGAGGGACAATCTTCTCCTTTTGTAGCCGCTACATTCCTGTGTCCAAAGTGCAAGACGAAAGCAACATCCTCTAGTGTTGTTAAGGATAGCACTGGGACATGGATGGTTTCCATGGAAGGGACAAGTACGGATCAAGTAAGTATGGAAATGGGTGGTTGTCTTTCTTTTATTAGCTAGATCATTCATTGTGAATGTTTAAGTTGAATGTTATTCTACCTTCTTTGGCAGGATTCGGAGAAAGTTTTGTTCCAAGCTCTAGAGAGAGAGAAGCAGCTTGAAAGTGTATGCAAGGATCAAGCAGACAAAATTGAGCAGCTAAACCAACGAGTAAGAGTTCTTTCACTCTAGTAATTTGTTTAAATATGACAGAAAATTACCTCAAGTTTGATATTAATTATGAATCTTGTCCTTGCAGCTAGCCCGCTGTAAGTGCACACAAGAACAGAGTTCTTTAGTTGATTGTGGCAAGGATGTCGTTGATCTCCACGACAATGAGAATCAAGCTTCAATAATCTATCAGAATGGGAGTCAATCACCCAACATCCCAAAGGTGAGCGCCGTTTTTAGCTTTCTTTTGTTAGAGTTGAGATTTTTCCTATTTTTTCTTATTATTTACTTGCGCCTTTTGGTTTGCTTCAGCTCCTGAAATGGGACGATGAAAGTCCTGAGCCTGAAGCTGCAGGAGAGAAGTATGAAACTAAAGAAATTCAGGGCAATGTCGAAAACAGTGGCGGGAAAAAAATGTTTGATATGGCTGAGAGAGAAGCACTACTTAAAGAAATTGGAGGCCTAAGGGCCCAATTGAAGTCAGATGGAGCCTCCACAAACAAATCACTTGAAAGAACCAGATCCTCTTTGTTAGCACAATCAATGCAGCTGAGAAAAAGTGGTGTATATGCTACTACGGGTTCTGGTGAAGAACTTGAGAAGGAAAGAGAAAGATGGACTGAGATGGAAAGTGAGTGGATTTGTCTAACTGATGAGCTTAGAATTGATCTTGAGGCTTATCGCCAGCGTGCAGAAAAGGTGGCAATGGAATTAATGTTGGAGAAGAAATGCACGGATGAGTTGGATGATGCCCTCAAAAGATCCGTCTTTGGGCAAGCCAGAATAATTGAGCATTACGCGGAATTACAGGAGAAGTACAACGACTTAGCTGAGAAGCATAAGTTGATCTTGCAAGGGATACAAGATGTGAAAAATGCTGCAGCAAAAGCAGGAAAGAAAGGCCATGGTGCTCGTTTCGCCAAGTCTCTCGCTGCAGAGCTGTCAGCTTTGAGAGTGGAAAGGGAAAGAGAGAGGGAAATGCTGAAAAAGGAGAATAAAAGCTTGAGAGTTCAACTTAAAGACACTGCTGAAGCTGTTCATGCAGCCGGAGAACTTCTTGTTAGATTGAGAGAAGCGGAGGAAACAGCTTCACTTGCTGAGGTAATTTTGCGTTTAAACATGGACACACACCGGTTTATACGTTAACTCATTGTTTTGATTAAACATTTCTTTACTTCTTTTACAGGAGAACTTTACACAATCAAAGGAAGAGAATGAGAGATTGAAGAAGCAAATAGAGAAGCTGAAGAGAAAACATAAGATGGAGATGATAACAATGAAACAGTATCTTGCTGAAAGCCGATTGCCAGAAGCAGCGTTGAGACCGCCTATTTACAGGCAAGACTCTGATGTAGCAAACAATGACAACAACAACACCATCCAACATTCTGAGTATGATGATGATCAATCATGGAGAGCAGAATTTGGCGCTATTTATCAAGAACACATATGAGCCATGTTTGATTGAACTATGGAAACACGTGAAGACCCTGCTCGGGACTTTGCTGAAAAAAACCTGCTCATCTTGATCACACCTTAGTGTTATTCAGGGATGAATTGGCTGTATTCTTATTGATTTTATCATTCTTTTGAAACTTGATTGACCAGATTTGACATTTGTTGTGAGCTGTTTCTTCAGCTTGTTAATAATAATGCTTATGTATCCTAAAAAGTCATTCAACTTTATGCACAAGTAT</genome_strand>
        <mrna_strand>CTTAGTT-AG-AATGTCAGAAAACAGATTCTTAGGCAACATTTCTGCGTCTTCGTTCCGAAATCTACTTCCAAAATCAGTTTCAACTAAGAAAAAGTTGAGTTCAAGTAGATTTAAGCATAAAATGAACAGTGAAAATGTTGCTCCTATAGATCCCAACGTTCAGATCAGTGATCCACCGTTGTTACCTACGAGTTCGATACTTAAAAAAACCGTCTTGAAGACGATTGATAGTGATGTATCGACAGAACTCACCAGATCTGTTGCACAGGAACAAACATCAGAAGCTCCTGATCCACCAGTTAAG...............................................................................................................................................................................................................................................GTTGTTGCAAGGATTAGACCTGCTAATGGTATTGAGAGTGGAACCCAAGCGGTTCGCAAAGCTTCTGATACCTCAGTGTGTGTTGCTGATAGAAAGTTTGACTTTGACATGGTTTTTGGTTCAAATTCGAATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATGTATTTCAATCGGTTGGTGCCCCTTTAGTTAAGGATGCATTGGCAGGTTACAACACTTCTCTCTTAGCTTATGGACAG...................................................................................ACTGGAAGTGGCAAGACTTATACAATGTGGGGACCTCCTAGTTCCATTGTTGAAGTTCCATCACCTAATGGTCTTCAAGGCATTGTGCCGCGCATTTTTCAGACATTGTTTTCTAGTATACAAAAA...................................................................................GAGCAAGAGAACTCTGAAGGTAAACAGATAAATTACCAGTGTCGTTGCTCGTTCCTAGAG...................................................................................ATATATGATGAACACATTGGGGATCTACTTGATCCTACACAGAGAAACTTAAAG................................................................................................ATAATGGATGATCCAAGAGTTGGATTCTATGTTGAGAACATAACTGAGGAATATGTGTCTACCTACGAGGATGTATCACAAATGTTGATTAAG...................................................................................................................................GGTCTTTCAAGTAGAAAAGTTGGATCAACGAGCATCAATTCGAAGAGTTCTAGGTCCCATATTGTTTTTACCTGCGTCATTGAGTCCTGGTGCAAG.....................................................................................................................................................................................GAGTCCTCATCAACGTGTTTTGGTAGCTCAAAGATGAGCAGAATGAGCCTTGTTGATCTTGCTGGATTTGACAAAAATATACCTGATGATGCCGGTAAACAGCTTGTTAAGGAAGGGAAGTATGTAAAGAAGTCCACATCACTGCTCGG....................................................................................................................................................................................................................................................................................................................................................GCATTTGGTTAATGTCCTCTCTGAAAGGAGTCAGTCCAGGAAACTTGAGGATGTTTCGTACAGCAGTTCCACTTTGACTCATTTAATGAGAGAATCACTTGGTGGGAATGCTAAACTCTCCGTCATATGTGCTATCAGCCCAGAAAACAA.............................................................................................................................................................................................................................GCATAATAGTGAAACAGTAAGCACTCTGAGATTTGGGAAACGGGTTAAACTCACACCAAATGAGCCATTGGTAAATGAAATAACAGAAGACGATGTTAATGGCCTGAGTGATCAGATTCGCCAATTGAAG...........................................................................................GAAGAGCTTATAAGAGCTCGGTCAAGTGCAAGCATTTCAGTCGGAAGCAACTATGGATCCTTCAGAGGACCAAATGTACGTGAAAGTTTGAATCAGTTGAGAGTGAGCCTTAACCGTTCACTCATCTTACCTGACATATATAATGAGCGTGAAGAAGAAGAGGTTCACATAAATGAGGATGATATAAAAGAACTACAGCTCCAGATCAATAACTTACGTGGTTCACGTGGAAATAACTCAAACTCTCTCAAGTATTCATCTGGAGAAAGTGAACACTATCTCAGCTGTTCAGAAGAAAGTGAAGGTGAAGAAATTAACTCAGATGAGATACTGGAGGAGACCCTTGATGATGCTGACCAAGAGATGGAAACGATGCAGCCTGAATACTGTAGCAGCATCTCAATAGGCCCATCCCGCCATTCTGCTGATCTTCCTGGCCCGGTGTTATCTGAGTCCCCAAAGTTTCGGAACATGCAGAGGAAGAGCTTAATTATCTCCGGTGAAGATAATATTCAAAGGTCCTTCAAAAGTTCTGAATTGGCTTTCCTGGCACAGAAACCAGACCTTGTCCAGTCTTCTTTGAGGTCCAGCAGAATATTTCCTGGGCCAACTGAATCCTTGGCTGCCAGTCTACATAGAGGACTAGAGATCATTGATTATCACCAAAGGAATTCCGCATCAAATAAATCTTTGGTTTCCTTCTCTTTTGAACATTTGGCAGTGAACCCAAGCCCAATGTCAAATGGTAAGGCCAATGCTTCTATTCAAACATCATCGGAAGAGGGACAATCTTCTCCTTTTGTAGCCGCTACATTCCTGTGTCCAAAGTGCAAGACGAAAGCAACATCCTCTAGTGTTGTTAAGGATAGCACTGGGACATGGATGGTTTCCATGGAAGGGACAAGTACGGATCAA.............................................................................................GATTCGGAGAAAGTTTTGTTCCAAGCTCTAGAGAGAGAGAAGCAGCTTGAAAGTGTATGCAAGGATCAAGCAGACAAAATTGAGCAGCTAAACCAACGA........................................................................................CTAGCCCGCTGTAAGTGCACACAAGAACAGAGTTCTTTAGTTGATTGTGGCAAGGATGTCGTTGATCTCCACGACAATGAGAATCAAGCTTCAATAATCTATCAGAATGGGAGTCAATCACCCAACATCCCAAAG.........................................................................................CTCCTGAAATGGGACGATGAAAGTCCTGAGCCTGAAGCTGCAGGAGAGAAGTATGAAACTAAAGAAATTCAGGGCAATGTCGAAAACAGTGGCGGGAAAAAAATGTTTGATATGGCTGAGAGAGAAGCACTACTTAAAGAAATTGGAGGCCTAAGGGCCCAATTGAAGTCAGATGGAGCCTCCACAAACAAATCACTTGAAAGAACCAGATCCTCTTTGTTAGCACAATCAATGCAGCTGAGAAAAAGTGGTGTATATGCTACTACGGGTTCTGGTGAAGAACTTGAGAAGGAAAGAGAAAGATGGACTGAGATGGAAAGTGAGTGGATTTGTCTAACTGATGAGCTTAGAATTGATCTTGAGGCTTATCGCCAGCGTGCAGAAAAGGTGGCAATGGAATTAATGTTGGAGAAGAAATGCACGGATGAGTTGGATGATGCCCTCAAAAGATCCGTCTTTGGGCAAGCCAGAATAATTGAGCATTACGCGGAATTACAGGAGAAGTACAACGACTTAGCTGAGAAGCATAAGTTGATCTTGCAAGGGATACAAGATGTGAAAAATGCTGCAGCAAAAGCAGGAAAGAAAGGCCATGGTGCTCGTTTCGCCAAGTCTCTCGCTGCAGAGCTGTCAGCTTTGAGAGTGGAAAGGGAAAGAGAGAGGGAAATGCTGAAAAAGGAGAATAAAAGCTTGAGAGTTCAACTTAAAGACACTGCTGAAGCTGTTCATGCAGCCGGAGAACTTCTTGTTAGATTGAGAGAAGCGGAGGAAACAGCTTCACTTGCTGAG.....................................................................................GAGAACTTTACACAATCAAAGGAAGAGAATGAGAGATTGAAGAAGCAAATAGAGAAGCTGAAGAGAAAACATAAGATGGAGATGATAACAATGAAACAGTATCTTGCTGAAAGCCGATTGCCAGAAGCAGCGTTGAGACCGCCTATTTACAGGCAAGACTCTGATGTAGCAAACAATGACAACAACAACACCATCCAACATTCTGAGTATGATGATGATCAATCATGGAGAGCAGAATTTGGCGCTATTTATCAAGAACACATATGAGCCATGTTTGATTGAACTATGGAAACACGTGAAGACCCTGCTCGGGACTTTGCTGAAAAAAACCTGCTCATCTTGATCACACCTTAGTGTTATTCAGGGATGAATTGGCTGTATTCTTATTGATTTTATCATTCTTTTGAAACTTGATTGACCAGATTTGACATTTGTTGTGAGCTGTTTCTTCAGCTTGTTAATAATAATGCTTATGTATCCTAAAAAGTCATTCAACTTTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E414326" ref_strand="+" ref_description="SGN-E414326 [STM-19-G20]">
      <seq>caaaatcaaattttcagatttccctctcttcataccctttccactctcaaagctgagagctccgcagcaagagacttggcaaaacgagcaccatgacctttctttcctgcttttgctgcagcatttttcacatcttgtatcccttgcaagatcaacttatgcttctcagctaagtcgttgtacttctcctgtaattccgcgtaatgctcaattattctggcttgcccaaagactgatcttttgagggcatcatccaactcatctgtgcatttcttctccaacattaattccattgccaccttttctgcacgctggcgataagcctcaagatcaattctaagctcatcagttagacaaatccactcgctctccatttcagtccatctttctctttccttctcaagttcttcaccagaacctgtagctgcatatacaccactttttctcagctgcattgattgtgctaacaaagaggatctggttctttcaattgatttatttgtagatgctccatctgacttcaattgggaccttaggcctccaatttctttaagtagtgcttctctctcagccatatcaaacatttttttcccaccacagttttccacattgccctgaatttctttagtttcatacttctctcctgcagcttcaggctcaggactttcatcatcccatttcaagagctttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="66971" stop="68248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67278" g_stop="67953" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="693" r_length="677" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E414326" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67278" e_stop="67953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTCCCTCTC-TCTTTCCCTTTCCACTCTCAAAGCTGACAGCTCTGCAGCGAGAGACTTGGCGAAACGAGCACCATGGCCTTTCTTTCCTGCTTTTGCTGCAGCATTTTTCACATCTTGTATCCCTTGCAAGATCAACTTATGCTTCTCAGCTAAGTCGTTGTACTTCTCCTGTAATTCCGCGTAATGCTCAATTATTCTGGCTTGCCCAAAGACGGATCTTTTGAGGGCATCATCCAACTCATCCGTGCATTTCTTCTCCAACATTAATTCCATTGCCACCTTTTCTGCACGCTGGCGATAAGCCTCAAGATCAATTCTAAGCTCATCAGTTAGACAAATCCACTCACTTTCCATCTCAGTCCATCTTTCTCTTTCCTTCTCAAGTTCTTCACCAGAACCCGTAGTAGCATATACACCACTTTTTCTCAGCTGCATTGATTGTGCTAACAAAGAGGATCTGGTTCTTTCAAGTGATTTGTTTGTGGAGGCTCCATCTGACTTCAATTGGGCCCTTAGGCCTCCAATTTCTTTAAGTAGTGCTTCTCTCTCAGCCATATCAAACATTTTTTTCCCGCCACTGTTTTCGACATTGCCCTGAATTTCTTTAGTTTCATACTTCTCTCCTGCAGCTTCAGGCTCAGGACTTTCATCGTCCCATTTCAGGAGCTGAAGC</genome_strand>
        <mrna_strand>GATTTCCCTCTCTTCATACCCTTTCCACTCTCAAAGCTGAGAGCTCCGCAGCAAGAGACTTGGCAAAACGAGCACCATGACCTTTCTTTCCTGCTTTTGCTGCAGCATTTTTCACATCTTGTATCCCTTGCAAGATCAACTTATGCTTCTCAGCTAAGTCGTTGTACTTCTCCTGTAATTCCGCGTAATGCTCAATTATTCTGGCTTGCCCAAAGACTGATCTTTTGAGGGCATCATCCAACTCATCTGTGCATTTCTTCTCCAACATTAATTCCATTGCCACCTTTTCTGCACGCTGGCGATAAGCCTCAAGATCAATTCTAAGCTCATCAGTTAGACAAATCCACTCGCTCTCCATTTCAGTCCATCTTTCTCTTTCCTTCTCAAGTTCTTCACCAGAACCTGTAGCTGCATATACACCACTTTTTCTCAGCTGCATTGATTGTGCTAACAAAGAGGATCTGGTTCTTTCAATTGATTTATTTGTAGATGCTCCATCTGACTTCAATTGGGACCTTAGGCCTCCAATTTCTTTAAGTAGTGCTTCTCTCTCAGCCATATCAAACATTTTTTTCCCACCACAGTTTTCCACATTGCCCTGAATTTCTTTAGTTTCATACTTCTCTCCTGCAGCTTCAGGCTCAGGACTTTCATCATCCCATTTCAAGAGCTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E414325" ref_strand="+" ref_description="SGN-E414325 [STM-19-G20]">
      <seq>tgaatccttggctgccagtctacatagaggactagagatcattgattatcaccaaaggaattccgcatcaaataaatctttagtttccttctcttttgaacatttggcagtgaacccaagcccaatgtcaaatgataaggccaatgcttctatccaaacatcatctgaagaaggacaaacttctccttttgtagccacttcattcctgtgcccaaagtgcaagacgaaagcaacttcctctagtgttgttaaggatagcactgggacatggatggtccccatggaaggggcaagtacggaacaagattcagagaaagttttgttccaagctctagagagagagaagcagcttgaaagtgtatgcaaggatcaagcagacaaacttgagcagctaaaccaacgactagcccactgtaaatgcacaaaagaacagagttctctagttgactgtggcaaggatgtcgttgatctccacgacaatgagaatcaagcttcactaatctatcagaatgggagtcaatcacccaacatcccaaagctcttgaaatgggatgatgaaagtcctgagcctgaagctgcaggagagaagtatgaaactaaagaaattcaggncantgtggaaaactgtggtgggaaaaaaatgtttgatatggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="69054" stop="67529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68754" g_stop="68451" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68450" i_stop="68358" i_length="93">
            <donor d_prob="0.911" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68357" g_stop="68259" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="403" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68258" i_stop="68171" i_length="88">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68170" g_stop="68036" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="538" r_length="135" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68035" i_stop="67947" i_length="89">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67946" g_stop="67829" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="656" r_length="118" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E414325" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E414325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68754" e_stop="68451"/>
          <exon e_start="68357" e_stop="68259"/>
          <exon e_start="68170" e_stop="68036"/>
          <exon e_start="67946" e_stop="67829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATCCTTGGCTGCCAGTCTACATAGAGGACTAGAGATCATTGATTATCACCAAAGGAATTCCGCATCAAATAAATCTTTGGTTTCCTTCTCTTTTGAACATTTGGCAGTGAACCCAAGCCCAATGTCAAATGGTAAGGCCAATGCTTCTATTCAAACATCATCGGAAGAGGGACAATCTTCTCCTTTTGTAGCCGCTACATTCCTGTGTCCAAAGTGCAAGACGAAAGCAACATCCTCTAGTGTTGTTAAGGATAGCACTGGGACATGGATGGTTTCCATGGAAGGGACAAGTACGGATCAAGTAAGTATGGAAATGGGTGGTTGTCTTTCTTTTATTAGCTAGATCATTCATTGTGAATGTTTAAGTTGAATGTTATTCTACCTTCTTTGGCAGGATTCGGAGAAAGTTTTGTTCCAAGCTCTAGAGAGAGAGAAGCAGCTTGAAAGTGTATGCAAGGATCAAGCAGACAAAATTGAGCAGCTAAACCAACGAGTAAGAGTTCTTTCACTCTAGTAATTTGTTTAAATATGACAGAAAATTACCTCAAGTTTGATATTAATTATGAATCTTGTCCTTGCAGCTAGCCCGCTGTAAGTGCACACAAGAACAGAGTTCTTTAGTTGATTGTGGCAAGGATGTCGTTGATCTCCACGACAATGAGAATCAAGCTTCAATAATCTATCAGAATGGGAGTCAATCACCCAACATCCCAAAGGTGAGCGCCGTTTTTAGCTTTCTTTTGTTAGAGTTGAGATTTTTCCTATTTTTTCTTATTATTTACTTGCGCCTTTTGGTTTGCTTCAGCTCCTGAAATGGGACGATGAAAGTCCTGAGCCTGAAGCTGCAGGAGAGAAGTATGAAACTAAAGAAATTCAGGGCAATGTCGAAAACAGTGGCGGGAAAAAAATGTTTGATATGGCTG</genome_strand>
        <mrna_strand>TGAATCCTTGGCTGCCAGTCTACATAGAGGACTAGAGATCATTGATTATCACCAAAGGAATTCCGCATCAAATAAATCTTTAGTTTCCTTCTCTTTTGAACATTTGGCAGTGAACCCAAGCCCAATGTCAAATGATAAGGCCAATGCTTCTATCCAAACATCATCTGAAGAAGGACAAACTTCTCCTTTTGTAGCCACTTCATTCCTGTGCCCAAAGTGCAAGACGAAAGCAACTTCCTCTAGTGTTGTTAAGGATAGCACTGGGACATGGATGGTCCCCATGGAAGGGGCAAGTACGGAACAA.............................................................................................GATTCAGAGAAAGTTTTGTTCCAAGCTCTAGAGAGAGAGAAGCAGCTTGAAAGTGTATGCAAGGATCAAGCAGACAAACTTGAGCAGCTAAACCAACGA........................................................................................CTAGCCCACTGTAAATGCACAAAAGAACAGAGTTCTCTAGTTGACTGTGGCAAGGATGTCGTTGATCTCCACGACAATGAGAATCAAGCTTCACTAATCTATCAGAATGGGAGTCAATCACCCAACATCCCAAAG.........................................................................................CTCTTGAAATGGGATGATGAAAGTCCTGAGCCTGAAGCTGCAGGAGAGAAGTATGAAACTAAAGAAATTCAGGNCANTGTGGAAAACTGTGGTGGGAAAAAAATGTTTGATATGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E473597" ref_strand="+" ref_description="SGN-E473597 [cSTB-33-O1]">
      <seq>tgaatccttggctgccagtctacatagaggactagagatcattgattatcaccaaaggaattccgcatcaaataaatctttagtttccttctcttttgaacatttggcagtgaacccaagcccaatgtcaaatgataaggccaatgcttctatccaaacatcatctgaagaaggacaaacttctccttttgtagccacttcattcctgtgcccaaagtgcaagacgaaagcaacttcctctagtgttgttaaggatagcactgggacatggatggtccccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="69054" stop="68172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68754" g_stop="68472" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E473597" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68754" e_stop="68472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATCCTTGGCTGCCAGTCTACATAGAGGACTAGAGATCATTGATTATCACCAAAGGAATTCCGCATCAAATAAATCTTTGGTTTCCTTCTCTTTTGAACATTTGGCAGTGAACCCAAGCCCAATGTCAAATGGTAAGGCCAATGCTTCTATTCAAACATCATCGGAAGAGGGACAATCTTCTCCTTTTGTAGCCGCTACATTCCTGTGTCCAAAGTGCAAGACGAAAGCAACATCCTCTAGTGTTGTTAAGGATAGCACTGGGACATGGATGGTTTCCATG</genome_strand>
        <mrna_strand>TGAATCCTTGGCTGCCAGTCTACATAGAGGACTAGAGATCATTGATTATCACCAAAGGAATTCCGCATCAAATAAATCTTTAGTTTCCTTCTCTTTTGAACATTTGGCAGTGAACCCAAGCCCAATGTCAAATGATAAGGCCAATGCTTCTATCCAAACATCATCTGAAGAAGGACAAACTTCTCCTTTTGTAGCCACTTCATTCCTGTGCCCAAAGTGCAAGACGAAAGCAACTTCCTCTAGTGTTGTTAAGGATAGCACTGGGACATGGATGGTCCCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E418302" ref_strand="+" ref_description="SGN-E418302 [STM-27-A16]">
      <seq>ggttacaacacttctctcttagcttatggacagaccggaagtggcaagacttatacaatgtggggacctcctagttccattgttgaagttccatcacctaatggtcttcaaggcattgtgccgcgcattttccagacgttgttttctagtatacaaaaagagcaagagaactctgaaggtaaacagataaattaccagtgtcgttgctcgttcctagagatatatgatgaacacattggggatctacttgatcctacacagagaaacttaaagataatggatgatccaagagttggattctatgttgagaacataactgaggaatatgtgtctacctacgaggacgtatcccaaatgttgattaagggcctttcaagtagaaaagttggatcaacgagcatcaattcgaagagttctaggtcccatattgtttttacctgcgtcattgagtcctggtgcaaggagtcctcatcaacgtgttttggtagctcaaagatgagcagaatgagccttgttgatcttgctggatttgacaaaaatatacctgatgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="71865" stop="70055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71565" g_stop="71533" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71532" i_stop="71450" i_length="83">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.823" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71449" g_stop="71324" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="159" r_length="126" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71323" i_stop="71241" i_length="83">
            <donor d_prob="0.869" d_score="0.96"/>
            <acceptor a_prob="0.682" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71240" g_stop="71181" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="219" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71180" i_stop="71098" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71097" g_stop="71044" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="273" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71043" i_stop="70948" i_length="96">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70947" g_stop="70855" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="366" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70854" i_stop="70724" i_length="131">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70723" g_stop="70628" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="462" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70627" i_stop="70447" i_length="181">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70446" g_stop="70355" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="554" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E418302" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71565" e_stop="71533"/>
          <exon e_start="71449" e_stop="71324"/>
          <exon e_start="71240" e_stop="71181"/>
          <exon e_start="71097" e_stop="71044"/>
          <exon e_start="70947" e_stop="70855"/>
          <exon e_start="70723" e_stop="70628"/>
          <exon e_start="70446" e_stop="70355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTACAACACTTCTCTCTTAGCTTATGGACAGGTTAGTTTTACTTGTAATGTTTCATTTTCATTGTGTCACAATAAATCTGTATCTGATGGCTGAAGTGATTCTTTTGGTGATAGACTGGAAGTGGCAAGACTTATACAATGTGGGGACCTCCTAGTTCCATTGTTGAAGTTCCATCACCTAATGGTCTTCAAGGCATTGTGCCGCGCATTTTTCAGACATTGTTTTCTAGTATACAAAAAGTAAGTTCCTTCTCCATTTAAAAGTTAGAACTGAAGACTGTCAAGACATTTCTGATATTTAGATAATTTCCTTGATTGATCAGGAGCAAGAGAACTCTGAAGGTAAACAGATAAATTACCAGTGTCGTTGCTCGTTCCTAGAGGTATGTATTCTAAATATTTACCCTTGCTCACATATGATGCATACTCGTGCCAAGTCTAATTATGTCACACTTCTTCTTTCCAGATATATGATGAACACATTGGGGATCTACTTGATCCTACACAGAGAAACTTAAAGGTTAGTTGCAAATCTTGGAACACGATATTGTTCTAGGCGCTATTCACTTTATGAAAAAACAGAATGCTGAAGATTCGTCCTTTTTGGTTATTCCAGATAATGGATGATCCAAGAGTTGGATTCTATGTTGAGAACATAACTGAGGAATATGTGTCTACCTACGAGGATGTATCACAAATGTTGATTAAGGTGCACAAACGCTTTTCCTATCATAATACTTTGAACTTTCTAGTAGTTCTGTCAATGCAATAAAATGAGATAAGAATGCTTTAGCTTTCACTTATCTTATTGTTTCTTATTCTTTTGCATTTGAATTGTAGGGTCTTTCAAGTAGAAAAGTTGGATCAACGAGCATCAATTCGAAGAGTTCTAGGTCCCATATTGTTTTTACCTGCGTCATTGAGTCCTGGTGCAAGGTATCTTCCAACTATGAAATCTGGTTTTTTGTGTGTTTTGTCAGGAAGAAATTTTATACATTCATCTTCTTATCTAACCCCGGAGTTCATATTACCGTCTAATTTCTCACTATAAAGTTTTATCGTCATAGTTGAAGACCTTTAATCTTTTCAAGTGTCTAATTAAACAATATTACTTCAGGAGTCCTCATCAACGTGTTTTGGTAGCTCAAAGATGAGCAGAATGAGCCTTGTTGATCTTGCTGGATTTGACAAAAATATACCTGATGATGC</genome_strand>
        <mrna_strand>GGTTACAACACTTCTCTCTTAGCTTATGGACAG...................................................................................ACCGGAAGTGGCAAGACTTATACAATGTGGGGACCTCCTAGTTCCATTGTTGAAGTTCCATCACCTAATGGTCTTCAAGGCATTGTGCCGCGCATTTTCCAGACGTTGTTTTCTAGTATACAAAAA...................................................................................GAGCAAGAGAACTCTGAAGGTAAACAGATAAATTACCAGTGTCGTTGCTCGTTCCTAGAG...................................................................................ATATATGATGAACACATTGGGGATCTACTTGATCCTACACAGAGAAACTTAAAG................................................................................................ATAATGGATGATCCAAGAGTTGGATTCTATGTTGAGAACATAACTGAGGAATATGTGTCTACCTACGAGGACGTATCCCAAATGTTGATTAAG...................................................................................................................................GGCCTTTCAAGTAGAAAAGTTGGATCAACGAGCATCAATTCGAAGAGTTCTAGGTCCCATATTGTTTTTACCTGCGTCATTGAGTCCTGGTGCAAG.....................................................................................................................................................................................GAGTCCTCATCAACGTGTTTTGGTAGCTCAAAGATGAGCAGAATGAGCCTTGTTGATCTTGCTGGATTTGACAAAAATATACCTGATGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E441280" ref_strand="+" ref_description="SGN-E441280 [cSTA-29-J24]">
      <seq>ggttacaacacttctctcttagcttatggacagaccggaagtggcaagacttatacaatgtggggacctcctagttccattgttgaagttccatcacctaatggtcttcaaggcattgtgccgcgcattttccagacgttgttttctagtatacaaaaagagcaagagaactctgaaggtaaacagataaattaccagtgtcgttgctcgttcctagagatatatgatgaacacattggggatctacttgatcctacacagagaaacttaaagataatggatgatccaagagttggattctatgttgagaacataactgaggaatatgtgtctacctacgaggacgtatcccaaatgttgattaagggcctttcaagtagaaaagttggatcaacgagcatcaattcgaagagttctaggtcccatattgtttttacctgcgtcattgagtcctggtgcaaggagtcctcatcaacgtgttttggtagctcaaagatgagcagaatgagccttgttgatcttgctggatttgacaaaaatatacctgatgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="71865" stop="70055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71565" g_stop="71533" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71532" i_stop="71450" i_length="83">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.823" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71449" g_stop="71324" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="159" r_length="126" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71323" i_stop="71241" i_length="83">
            <donor d_prob="0.869" d_score="0.96"/>
            <acceptor a_prob="0.682" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71240" g_stop="71181" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="219" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71180" i_stop="71098" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71097" g_stop="71044" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="273" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71043" i_stop="70948" i_length="96">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70947" g_stop="70855" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="366" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70854" i_stop="70724" i_length="131">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70723" g_stop="70628" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="462" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70627" i_stop="70447" i_length="181">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70446" g_stop="70355" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="554" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E441280" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71565" e_stop="71533"/>
          <exon e_start="71449" e_stop="71324"/>
          <exon e_start="71240" e_stop="71181"/>
          <exon e_start="71097" e_stop="71044"/>
          <exon e_start="70947" e_stop="70855"/>
          <exon e_start="70723" e_stop="70628"/>
          <exon e_start="70446" e_stop="70355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTACAACACTTCTCTCTTAGCTTATGGACAGGTTAGTTTTACTTGTAATGTTTCATTTTCATTGTGTCACAATAAATCTGTATCTGATGGCTGAAGTGATTCTTTTGGTGATAGACTGGAAGTGGCAAGACTTATACAATGTGGGGACCTCCTAGTTCCATTGTTGAAGTTCCATCACCTAATGGTCTTCAAGGCATTGTGCCGCGCATTTTTCAGACATTGTTTTCTAGTATACAAAAAGTAAGTTCCTTCTCCATTTAAAAGTTAGAACTGAAGACTGTCAAGACATTTCTGATATTTAGATAATTTCCTTGATTGATCAGGAGCAAGAGAACTCTGAAGGTAAACAGATAAATTACCAGTGTCGTTGCTCGTTCCTAGAGGTATGTATTCTAAATATTTACCCTTGCTCACATATGATGCATACTCGTGCCAAGTCTAATTATGTCACACTTCTTCTTTCCAGATATATGATGAACACATTGGGGATCTACTTGATCCTACACAGAGAAACTTAAAGGTTAGTTGCAAATCTTGGAACACGATATTGTTCTAGGCGCTATTCACTTTATGAAAAAACAGAATGCTGAAGATTCGTCCTTTTTGGTTATTCCAGATAATGGATGATCCAAGAGTTGGATTCTATGTTGAGAACATAACTGAGGAATATGTGTCTACCTACGAGGATGTATCACAAATGTTGATTAAGGTGCACAAACGCTTTTCCTATCATAATACTTTGAACTTTCTAGTAGTTCTGTCAATGCAATAAAATGAGATAAGAATGCTTTAGCTTTCACTTATCTTATTGTTTCTTATTCTTTTGCATTTGAATTGTAGGGTCTTTCAAGTAGAAAAGTTGGATCAACGAGCATCAATTCGAAGAGTTCTAGGTCCCATATTGTTTTTACCTGCGTCATTGAGTCCTGGTGCAAGGTATCTTCCAACTATGAAATCTGGTTTTTTGTGTGTTTTGTCAGGAAGAAATTTTATACATTCATCTTCTTATCTAACCCCGGAGTTCATATTACCGTCTAATTTCTCACTATAAAGTTTTATCGTCATAGTTGAAGACCTTTAATCTTTTCAAGTGTCTAATTAAACAATATTACTTCAGGAGTCCTCATCAACGTGTTTTGGTAGCTCAAAGATGAGCAGAATGAGCCTTGTTGATCTTGCTGGATTTGACAAAAATATACCTGATGATGC</genome_strand>
        <mrna_strand>GGTTACAACACTTCTCTCTTAGCTTATGGACAG...................................................................................ACCGGAAGTGGCAAGACTTATACAATGTGGGGACCTCCTAGTTCCATTGTTGAAGTTCCATCACCTAATGGTCTTCAAGGCATTGTGCCGCGCATTTTCCAGACGTTGTTTTCTAGTATACAAAAA...................................................................................GAGCAAGAGAACTCTGAAGGTAAACAGATAAATTACCAGTGTCGTTGCTCGTTCCTAGAG...................................................................................ATATATGATGAACACATTGGGGATCTACTTGATCCTACACAGAGAAACTTAAAG................................................................................................ATAATGGATGATCCAAGAGTTGGATTCTATGTTGAGAACATAACTGAGGAATATGTGTCTACCTACGAGGACGTATCCCAAATGTTGATTAAG...................................................................................................................................GGCCTTTCAAGTAGAAAAGTTGGATCAACGAGCATCAATTCGAAGAGTTCTAGGTCCCATATTGTTTTTACCTGCGTCATTGAGTCCTGGTGCAAG.....................................................................................................................................................................................GAGTCCTCATCAACGTGTTTTGGTAGCTCAAAGATGAGCAGAATGAGCCTTGTTGATCTTGCTGGATTTGACAAAAATATACCTGATGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E475766" ref_strand="+" ref_description="SGN-E475766 [cSTB-41-P7]">
      <seq>ccatttttctcttctcctcctccgccgtccgccgtccgccgtcaaaatcaacgctctttcttagttaaaaaatgtcagaaaacagattcttaggcaacatttctgcctcttcgttccgaaatctacttccaaaatcagtttcaactaagaaaaagttgagttcaagccgatttaaacacaaaatgaacagtgaaaatgttgctcctatagatcccaacattcagatcagtgatccaccgttgttacctacaagttcgatacttaaaaaacccgtcttgaagacgattgatagtgatgtatcggcagaactcaccagatctgttgcacaggaacaaacatcagaagctcctgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="73121" stop="72177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72796" g_stop="72477" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="354" r_length="320" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E475766" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72796" e_stop="72477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGCCGGAAAAATAAACGCTCTTTCTTAGTTCAGAAATGTCAGAAAACAGATTCTTAGGCAACATTTCTGCGTCTTCGTTCCGAAATCTACTTCCAAAATCAGTTTCAACTAAGAAAAAGTTGAGTTCAAGTAGATTTAAGCATAAAATGAACAGTGAAAATGTTGCTCCTATAGATCCCAACGTTCAGATCAGTGATCCACCGTTGTTACCTACGAGTTCGATACTTAAAAAAACCGTCTTGAAGACGATTGATAGTGATGTATCGACAGAACTCACCAGATCTGTTGCACAGGAACAAACATCAGAAGCTCCTGATC</genome_strand>
        <mrna_strand>TCCGCCGTCAAAATCAACGCTCTTTCTTAGTTAAAAAATGTCAGAAAACAGATTCTTAGGCAACATTTCTGCCTCTTCGTTCCGAAATCTACTTCCAAAATCAGTTTCAACTAAGAAAAAGTTGAGTTCAAGCCGATTTAAACACAAAATGAACAGTGAAAATGTTGCTCCTATAGATCCCAACATTCAGATCAGTGATCCACCGTTGTTACCTACAAGTTCGATACTTAAAAAACCCGTCTTGAAGACGATTGATAGTGATGTATCGGCAGAACTCACCAGATCTGTTGCACAGGAACAAACATCAGAAGCTCCTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E483895" ref_strand="+" ref_description="SGN-E483895 [cSTE-11-G12]">
      <seq>ggactttctgacaaacttccaaatccactaccatcattcttgttgattttattctctgcaaatctcaattattcttctcctttgcttcgttttttgagttggattttcttcattttccataaaagattactcttttggatagttttttggcttaataatcagagactcaatctgttctatttgtggtcagcttcatggattctccacagtctgttgtgtcaccatttaagggttcctccgttttcgcggactctgagaagcgaaacaatgaatttttcagcaagaacccttctggcctatcccggggaatctctgctcatagagaggaggccgaagtctgcaacatggaggacttcattggtgttctcgacgtgtatgtacatcaggctagagatatccacaacatctgcatttaccataaacaagatgtttatgcaaaactttgccttacaagtgatcctggaagntcagtctccactcaaaccattaatggcgggtgggaaaagtccagtcttcaatgaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="77419" stop="80165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77719" g_stop="77891" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77892" i_stop="79513" i_length="1622">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79514" g_stop="79865" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="526" r_length="353" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E483895" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77719" e_stop="77891"/>
          <exon e_start="79514" e_stop="79865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTTTCTGACAAACTTCCAAATCCACTATCATCATTCTTGTTGATTTTATTCTCTGCAAATCACAATTATTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTGGTAAAGAATTGGGTTCTTGGACTTTTAGTTGTTTATGTTGTTATTCTTTGACTTTGTTCTGTTTTTTGCTTGTTTAGTTTCTGAGTTGAGACTGTTTTCTGTTCTTGATTTTGAGGTGTGTTTTGTGTTTTTTTTTTTGTCTTGAAGGGGAAAAGGGGTTAAAGATTGTAGCTTTGTTCATGTAGATTTGGTGCAGGATTTAAGTTGAATAGTTAAGGGGAAAGGTAAAGATTGTGGCTTTATGCATTCTCATGGGTGCTGCACAGTTAAAACACTTGTAGGTTTATATACTTTATCTTTGGTGTCTGAGTTTAGTTTTAACACTTTGTGAGGAAGTTAAAGATTGTAGCTTTATTTGCTTTTCTGAGGTGCTGAATGGTTAGTACTTTATGGGGGTTCTGTTTGTAGGTTTATTTATTTTATCTTTGGTGTCTGAGTTAAGTTTAACCCTTTGGTAGGATTGGAAGTTAAAGATTGTTATCTTTATTTGCTTCTCAGAGGTGCTGGATTAGTTAATACTTTATGGGGTTCTGTTTATTTTTAGGATCAGAGCTGTGTGATTTGTTTCTTTAAGGAGGGAACCTGAGTTTTGAAGTGATTCTTTTTGGTGTGTTTTGGGGTTTTGTCTCTCCTTCCTTTTAGCTTTTTTTCAGTTTGGTATGAGTAAAGCTGAATTCTTTTTGAAAATAGGAGAATAGATTGAGTTAACTAGTTGACTAGCTTGGAGCAACGGTAAAGTTGTATCAGTGTGACCTATAAGTGTTTGAGTGGTGGAATAACGAGTGATGATTGTAGCAGGGTAGACTGTCTACATCACACCTCTTAGGATGCTTTGTGCACTTGGCTTCTATTTTTTTTAGGAGGTTATTCTTTTGATTCTTTAGCATAATTTCGGTATATTTCCTGATTTTGACTGTTTCTGCCTTCTATGCTATATTATTCTTCATCTTAAAATCAATTAACATGATGCTCCAATCTCAATCTTTCACTTCAGGGTTATTTTTGTTCTATTCGAGGAAAAAGATTTCATTTTTGTTTCCATTTACTTCTTTCTGTAATGAATTGTACATGTGTGGAATTGTTCTTCTTCTTGACATGATCTTGTTGTTATCTTTGATCCTTTATTTGCCATGTTATCATTTATGAGCTCTGAATAATTGTCACTTGGTCCTAATATGTATCTGAGTTAGGTTAACGAGTTTATTCGTTAAGGTTTCACTTTAAATAAAGCTTCTAGTTCTTGTTTGATGGAGCATGTTACACAATAGGTAAATTCCACATTGAAATGAGAGATACGTACACATTTTGGCTCGATGATTGCATAGCCCAAGGGACAAATCCATAAGGTCTGTAGGGTCAAAGTGGACAATACGTATCATGGGTTTGGGCTGTGACATATAGTGTGGAGAGACCATTCGTTGGGAACTCCAGTATAGTTGTTGTGTGCTCCAAAACAAGTTTGTGTTAAACAAATATATTTCTACTCCTTCAATTACTAGCCGTTCCTCTGTTATAAGCTATTTAATTTGTGGAGATCATTCAGTTTTTGTTCATAGCTATGTGTTCAGTATTAGCCGATGTGATATCTGATATTGATCTTATCCTTCGATTTTCTTAGGTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGC-GGTGGGAAAAGTCCAGTCTTCAACGAAAATC</genome_strand>
        <mrna_strand>GGACTTTCTGACAAACTTCCAAATCCACTACCATCATTCTTGTTGATTTTATTCTCTGCAAATCTCAATTATTCTTCTCCTTTGCTTCGTTTTTTGAGTTGGATTTTCTTCATTTTCCATAAAAGATTACTCTTTTGGATAGTTTTTTGGCTTAATAATCAGAGACTCAATCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGGGTTCCTCCGTTTTCGCGGACTCTGAGAAGCGAAACAATGAATTTTTCAGCAAGAACCCTTCTGGCCTATCCCGGGGAATCTCTGCTCATAGAGAGGAGGCCGAAGTCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTATGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGGAAGNTCAGTCTCCACTCAAACCATTAATGGCGGGTGGGAAAAGTCCAGTCTTCAATGAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E577669" ref_strand="+" ref_description="SGN-E577669 [LE15BF03]">
      <seq>gactttctgacaaacttccaaatccactatcatcattcttgttgattttattctctgcaaatcacaattattctcatcctttgcttcgttttaagagttgggttttcttcattttccataaaagatcactcttttgggtagatttttggcttgataatcagagactcagtctggtggttatatttgtggtcagcttcatggattctccacagtctgttgtgtcaccatttaagagttcctccgttttcgcggactctgagaagcaaagcaatgaatttttcagcaagaacgcttctggtctatcccggggaatttctgctcatagagaggatgttgaaatctgcaacatggaggacttcattggtgttctcgacgtgtacgtacatcaggctagagatatccacaacatctgcatttaccataaacaagatgtttatgcaaaactttgccttacaagtgatcctgaaagtgcagtctccactcaaaccattaatggcggtgggaaaagtccagtcttcaacgaaaatctaaagctcaatgttcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcagggtgaggaattatttggaagaccaattgttgggatgtgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcggcgactgatctctttcactcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="77420" stop="80354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77720" g_stop="77895" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77896" i_stop="79513" i_length="1618">
            <donor d_prob="0.287" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79514" g_stop="80054" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="715" r_length="539" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E577669" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77720" e_stop="77895"/>
          <exon e_start="79514" e_stop="80054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTTCTGACAAACTTCCAAATCCACTATCATCATTCTTGTTGATTTTATTCTCTGCAAATCACAATTATTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTGGTAAAGAATTGGGTTCTTGGACTTTTAGTTGTTTATGTTGTTATTCTTTGACTTTGTTCTGTTTTTTGCTTGTTTAGTTTCTGAGTTGAGACTGTTTTCTGTTCTTGATTTTGAGGTGTGTTTTGTGTTTTTTTTTTTGTCTTGAAGGGGAAAAGGGGTTAAAGATTGTAGCTTTGTTCATGTAGATTTGGTGCAGGATTTAAGTTGAATAGTTAAGGGGAAAGGTAAAGATTGTGGCTTTATGCATTCTCATGGGTGCTGCACAGTTAAAACACTTGTAGGTTTATATACTTTATCTTTGGTGTCTGAGTTTAGTTTTAACACTTTGTGAGGAAGTTAAAGATTGTAGCTTTATTTGCTTTTCTGAGGTGCTGAATGGTTAGTACTTTATGGGGGTTCTGTTTGTAGGTTTATTTATTTTATCTTTGGTGTCTGAGTTAAGTTTAACCCTTTGGTAGGATTGGAAGTTAAAGATTGTTATCTTTATTTGCTTCTCAGAGGTGCTGGATTAGTTAATACTTTATGGGGTTCTGTTTATTTTTAGGATCAGAGCTGTGTGATTTGTTTCTTTAAGGAGGGAACCTGAGTTTTGAAGTGATTCTTTTTGGTGTGTTTTGGGGTTTTGTCTCTCCTTCCTTTTAGCTTTTTTTCAGTTTGGTATGAGTAAAGCTGAATTCTTTTTGAAAATAGGAGAATAGATTGAGTTAACTAGTTGACTAGCTTGGAGCAACGGTAAAGTTGTATCAGTGTGACCTATAAGTGTTTGAGTGGTGGAATAACGAGTGATGATTGTAGCAGGGTAGACTGTCTACATCACACCTCTTAGGATGCTTTGTGCACTTGGCTTCTATTTTTTTTAGGAGGTTATTCTTTTGATTCTTTAGCATAATTTCGGTATATTTCCTGATTTTGACTGTTTCTGCCTTCTATGCTATATTATTCTTCATCTTAAAATCAATTAACATGATGCTCCAATCTCAATCTTTCACTTCAGGGTTATTTTTGTTCTATTCGAGGAAAAAGATTTCATTTTTGTTTCCATTTACTTCTTTCTGTAATGAATTGTACATGTGTGGAATTGTTCTTCTTCTTGACATGATCTTGTTGTTATCTTTGATCCTTTATTTGCCATGTTATCATTTATGAGCTCTGAATAATTGTCACTTGGTCCTAATATGTATCTGAGTTAGGTTAACGAGTTTATTCGTTAAGGTTTCACTTTAAATAAAGCTTCTAGTTCTTGTTTGATGGAGCATGTTACACAATAGGTAAATTCCACATTGAAATGAGAGATACGTACACATTTTGGCTCGATGATTGCATAGCCCAAGGGACAAATCCATAAGGTCTGTAGGGTCAAAGTGGACAATACGTATCATGGGTTTGGGCTGTGACATATAGTGTGGAGAGACCATTCGTTGGGAACTCCAGTATAGTTGTTGTGTGCTCCAAAACAAGTTTGTGTTAAACAAATATATTTCTACTCCTTCAATTACTAGCCGTTCCTCTGTTATAAGCTATTTAATTTGTGGAGATCATTCAGTTTTTGTTCATAGCTATGTGTTCAGTATTAGCCGATGTGATATCTGATATTGATCTTATCCTTCGATTTTCTTAGGTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCC</genome_strand>
        <mrna_strand>GACTTTCTGACAAACTTCCAAATCCACTATCATCATTCTTGTTGATTTTATTCTCTGCAAATCACAATTATTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATGTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGGCGACTGATCTCTTTCACTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E245118" ref_strand="+" ref_description="SGN-E245118 [cLEF-13-F16]">
      <seq>actttctgacaaacttccaaatccactatcatcattcttgttgattttattctctgcaaatcacaattattctcatcctttgcttcgttttaagagttgggttttcttcattttccataaaagatcactcttttgggtagatttttggcttgataatcagagactcaatctgttggttatatttgtggccagcttcatggattctccacaggctgttgtgtcacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="77421" stop="79864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77721" g_stop="77895" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77896" i_stop="79513" i_length="1618">
            <donor d_prob="0.287" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79514" g_stop="79564" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="226" r_length="51" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E245118" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77721" e_stop="77895"/>
          <exon e_start="79514" e_stop="79564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTCTGACAAACTTCCAAATCCACTATCATCATTCTTGTTGATTTTATTCTCTGCAAATCACAATTATTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTGGTAAAGAATTGGGTTCTTGGACTTTTAGTTGTTTATGTTGTTATTCTTTGACTTTGTTCTGTTTTTTGCTTGTTTAGTTTCTGAGTTGAGACTGTTTTCTGTTCTTGATTTTGAGGTGTGTTTTGTGTTTTTTTTTTTGTCTTGAAGGGGAAAAGGGGTTAAAGATTGTAGCTTTGTTCATGTAGATTTGGTGCAGGATTTAAGTTGAATAGTTAAGGGGAAAGGTAAAGATTGTGGCTTTATGCATTCTCATGGGTGCTGCACAGTTAAAACACTTGTAGGTTTATATACTTTATCTTTGGTGTCTGAGTTTAGTTTTAACACTTTGTGAGGAAGTTAAAGATTGTAGCTTTATTTGCTTTTCTGAGGTGCTGAATGGTTAGTACTTTATGGGGGTTCTGTTTGTAGGTTTATTTATTTTATCTTTGGTGTCTGAGTTAAGTTTAACCCTTTGGTAGGATTGGAAGTTAAAGATTGTTATCTTTATTTGCTTCTCAGAGGTGCTGGATTAGTTAATACTTTATGGGGTTCTGTTTATTTTTAGGATCAGAGCTGTGTGATTTGTTTCTTTAAGGAGGGAACCTGAGTTTTGAAGTGATTCTTTTTGGTGTGTTTTGGGGTTTTGTCTCTCCTTCCTTTTAGCTTTTTTTCAGTTTGGTATGAGTAAAGCTGAATTCTTTTTGAAAATAGGAGAATAGATTGAGTTAACTAGTTGACTAGCTTGGAGCAACGGTAAAGTTGTATCAGTGTGACCTATAAGTGTTTGAGTGGTGGAATAACGAGTGATGATTGTAGCAGGGTAGACTGTCTACATCACACCTCTTAGGATGCTTTGTGCACTTGGCTTCTATTTTTTTTAGGAGGTTATTCTTTTGATTCTTTAGCATAATTTCGGTATATTTCCTGATTTTGACTGTTTCTGCCTTCTATGCTATATTATTCTTCATCTTAAAATCAATTAACATGATGCTCCAATCTCAATCTTTCACTTCAGGGTTATTTTTGTTCTATTCGAGGAAAAAGATTTCATTTTTGTTTCCATTTACTTCTTTCTGTAATGAATTGTACATGTGTGGAATTGTTCTTCTTCTTGACATGATCTTGTTGTTATCTTTGATCCTTTATTTGCCATGTTATCATTTATGAGCTCTGAATAATTGTCACTTGGTCCTAATATGTATCTGAGTTAGGTTAACGAGTTTATTCGTTAAGGTTTCACTTTAAATAAAGCTTCTAGTTCTTGTTTGATGGAGCATGTTACACAATAGGTAAATTCCACATTGAAATGAGAGATACGTACACATTTTGGCTCGATGATTGCATAGCCCAAGGGACAAATCCATAAGGTCTGTAGGGTCAAAGTGGACAATACGTATCATGGGTTTGGGCTGTGACATATAGTGTGGAGAGACCATTCGTTGGGAACTCCAGTATAGTTGTTGTGTGCTCCAAAACAAGTTTGTGTTAAACAAATATATTTCTACTCCTTCAATTACTAGCCGTTCCTCTGTTATAAGCTATTTAATTTGTGGAGATCATTCAGTTTTTGTTCATAGCTATGTGTTCAGTATTAGCCGATGTGATATCTGATATTGATCTTATCCTTCGATTTTCTTAGGTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCA</genome_strand>
        <mrna_strand>ACTTTCTGACAAACTTCCAAATCCACTATCATCATTCTTGTTGATTTTATTCTCTGCAAATCACAATTATTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAATCTGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATATTTGTGGCCAGCTTCATGGATTCTCCACAGGCTGTTGTGTCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E707811" ref_strand="+" ref_description="SGN-E707811 [FA34AB09]">
      <seq>gacatacttccaaatccactatcatcattcttgttgattttattctctgcaaatcacaattattctcatcctttgcttcgttttaagagttgggttttcttcattttccataaaagatcactcttttgggtagatttttggcttgataatcagagactcagtctgttggttatatttgtggtcagcttcatggattctccacagtctgttgtgtcaccatttaagagttcctccgttttcgcggactctgagaagcaaagcaatgaatttttcagcaagaacgcttctggtctatcccggggaatttctgctcatagagaggatgttgaaatctgcaacatggaggacttcattggtgttctcgacgtgtacgtacatcaggctagagatatccacaacatctgcatttaccataaacaagatgtttatgcaaaactttgcctacaagtgatcctgaaagtgcagtctccactcaaaccattaatggcggtgggaaaagtccagtcttcaacgaaaatctaaagctcaatgttcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattagaaactgatgcatctcggacagacggcgaagcacgtgagtcccttccaaatgagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="77428" stop="80489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77728" g_stop="77895" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77896" i_stop="79513" i_length="1618">
            <donor d_prob="0.287" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79514" g_stop="80189" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="841" r_length="673" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E707811" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77728" e_stop="77895"/>
          <exon e_start="79514" e_stop="80189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAACTTCCAAATCCACTATCATCATTCTTGTTGATTTTATTCTCTGCAAATCACAATTATTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTGGTAAAGAATTGGGTTCTTGGACTTTTAGTTGTTTATGTTGTTATTCTTTGACTTTGTTCTGTTTTTTGCTTGTTTAGTTTCTGAGTTGAGACTGTTTTCTGTTCTTGATTTTGAGGTGTGTTTTGTGTTTTTTTTTTTGTCTTGAAGGGGAAAAGGGGTTAAAGATTGTAGCTTTGTTCATGTAGATTTGGTGCAGGATTTAAGTTGAATAGTTAAGGGGAAAGGTAAAGATTGTGGCTTTATGCATTCTCATGGGTGCTGCACAGTTAAAACACTTGTAGGTTTATATACTTTATCTTTGGTGTCTGAGTTTAGTTTTAACACTTTGTGAGGAAGTTAAAGATTGTAGCTTTATTTGCTTTTCTGAGGTGCTGAATGGTTAGTACTTTATGGGGGTTCTGTTTGTAGGTTTATTTATTTTATCTTTGGTGTCTGAGTTAAGTTTAACCCTTTGGTAGGATTGGAAGTTAAAGATTGTTATCTTTATTTGCTTCTCAGAGGTGCTGGATTAGTTAATACTTTATGGGGTTCTGTTTATTTTTAGGATCAGAGCTGTGTGATTTGTTTCTTTAAGGAGGGAACCTGAGTTTTGAAGTGATTCTTTTTGGTGTGTTTTGGGGTTTTGTCTCTCCTTCCTTTTAGCTTTTTTTCAGTTTGGTATGAGTAAAGCTGAATTCTTTTTGAAAATAGGAGAATAGATTGAGTTAACTAGTTGACTAGCTTGGAGCAACGGTAAAGTTGTATCAGTGTGACCTATAAGTGTTTGAGTGGTGGAATAACGAGTGATGATTGTAGCAGGGTAGACTGTCTACATCACACCTCTTAGGATGCTTTGTGCACTTGGCTTCTATTTTTTTTAGGAGGTTATTCTTTTGATTCTTTAGCATAATTTCGGTATATTTCCTGATTTTGACTGTTTCTGCCTTCTATGCTATATTATTCTTCATCTTAAAATCAATTAACATGATGCTCCAATCTCAATCTTTCACTTCAGGGTTATTTTTGTTCTATTCGAGGAAAAAGATTTCATTTTTGTTTCCATTTACTTCTTTCTGTAATGAATTGTACATGTGTGGAATTGTTCTTCTTCTTGACATGATCTTGTTGTTATCTTTGATCCTTTATTTGCCATGTTATCATTTATGAGCTCTGAATAATTGTCACTTGGTCCTAATATGTATCTGAGTTAGGTTAACGAGTTTATTCGTTAAGGTTTCACTTTAAATAAAGCTTCTAGTTCTTGTTTGATGGAGCATGTTACACAATAGGTAAATTCCACATTGAAATGAGAGATACGTACACATTTTGGCTCGATGATTGCATAGCCCAAGGGACAAATCCATAAGGTCTGTAGGGTCAAAGTGGACAATACGTATCATGGGTTTGGGCTGTGACATATAGTGTGGAGAGACCATTCGTTGGGAACTCCAGTATAGTTGTTGTGTGCTCCAAAACAAGTTTGTGTTAAACAAATATATTTCTACTCCTTCAATTACTAGCCGTTCCTCTGTTATAAGCTATTTAATTTGTGGAGATCATTCAGTTTTTGTTCATAGCTATGTGTTCAGTATTAGCCGATGTGATATCTGATATTGATCTTATCCTTCGATTTTCTTAGGTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTT</genome_strand>
        <mrna_strand>GACATACTTCCAAATCCACTATCATCATTCTTGTTGATTTTATTCTCTGCAAATCACAATTATTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCC-TACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E428040" ref_strand="+" ref_description="SGN-E428040 [STM-49-J1]">
      <seq>gacaaacttccaaatccactaccatcattcttgttgattttattttctgcaaatctcaattattcttctcctttgcttcgttttttgagttgggttttcttcattttccataaaagattactcttttggatagttttttggcttaataatcagagactcaatctgttctatttgtggtcagcttcatggattctctacagtctgttgtgtcaccatttaagggttcctccgttttcgcggactctgagaaacaaagcaatgaatttttcagcaagaacccttctggcctatcccggggaatttctgctcatacagaagaggccgaaatctgcaacatggaggactttattggtgttctcgacgtgtacgtacatcagggtagagatatccacaacatctgcatttacccataaacaagatgtttatgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="77428" stop="80078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77728" g_stop="77891" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77892" i_stop="79513" i_length="1622">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79514" g_stop="79778" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="430" r_length="266" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E428040" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E428040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77728" e_stop="77891"/>
          <exon e_start="79514" e_stop="79778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAACTTCCAAATCCACTATCATCATTCTTGTTGATTTTATTCTCTGCAAATCACAATTATTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTGGTAAAGAATTGGGTTCTTGGACTTTTAGTTGTTTATGTTGTTATTCTTTGACTTTGTTCTGTTTTTTGCTTGTTTAGTTTCTGAGTTGAGACTGTTTTCTGTTCTTGATTTTGAGGTGTGTTTTGTGTTTTTTTTTTTGTCTTGAAGGGGAAAAGGGGTTAAAGATTGTAGCTTTGTTCATGTAGATTTGGTGCAGGATTTAAGTTGAATAGTTAAGGGGAAAGGTAAAGATTGTGGCTTTATGCATTCTCATGGGTGCTGCACAGTTAAAACACTTGTAGGTTTATATACTTTATCTTTGGTGTCTGAGTTTAGTTTTAACACTTTGTGAGGAAGTTAAAGATTGTAGCTTTATTTGCTTTTCTGAGGTGCTGAATGGTTAGTACTTTATGGGGGTTCTGTTTGTAGGTTTATTTATTTTATCTTTGGTGTCTGAGTTAAGTTTAACCCTTTGGTAGGATTGGAAGTTAAAGATTGTTATCTTTATTTGCTTCTCAGAGGTGCTGGATTAGTTAATACTTTATGGGGTTCTGTTTATTTTTAGGATCAGAGCTGTGTGATTTGTTTCTTTAAGGAGGGAACCTGAGTTTTGAAGTGATTCTTTTTGGTGTGTTTTGGGGTTTTGTCTCTCCTTCCTTTTAGCTTTTTTTCAGTTTGGTATGAGTAAAGCTGAATTCTTTTTGAAAATAGGAGAATAGATTGAGTTAACTAGTTGACTAGCTTGGAGCAACGGTAAAGTTGTATCAGTGTGACCTATAAGTGTTTGAGTGGTGGAATAACGAGTGATGATTGTAGCAGGGTAGACTGTCTACATCACACCTCTTAGGATGCTTTGTGCACTTGGCTTCTATTTTTTTTAGGAGGTTATTCTTTTGATTCTTTAGCATAATTTCGGTATATTTCCTGATTTTGACTGTTTCTGCCTTCTATGCTATATTATTCTTCATCTTAAAATCAATTAACATGATGCTCCAATCTCAATCTTTCACTTCAGGGTTATTTTTGTTCTATTCGAGGAAAAAGATTTCATTTTTGTTTCCATTTACTTCTTTCTGTAATGAATTGTACATGTGTGGAATTGTTCTTCTTCTTGACATGATCTTGTTGTTATCTTTGATCCTTTATTTGCCATGTTATCATTTATGAGCTCTGAATAATTGTCACTTGGTCCTAATATGTATCTGAGTTAGGTTAACGAGTTTATTCGTTAAGGTTTCACTTTAAATAAAGCTTCTAGTTCTTGTTTGATGGAGCATGTTACACAATAGGTAAATTCCACATTGAAATGAGAGATACGTACACATTTTGGCTCGATGATTGCATAGCCCAAGGGACAAATCCATAAGGTCTGTAGGGTCAAAGTGGACAATACGTATCATGGGTTTGGGCTGTGACATATAGTGTGGAGAGACCATTCGTTGGGAACTCCAGTATAGTTGTTGTGTGCTCCAAAACAAGTTTGTGTTAAACAAATATATTTCTACTCCTTCAATTACTAGCCGTTCCTCTGTTATAAGCTATTTAATTTGTGGAGATCATTCAGTTTTTGTTCATAGCTATGTGTTCAGTATTAGCCGATGTGATATCTGATATTGATCTTATCCTTCGATTTTCTTAGGTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTA-CCATAAACAAGATGTTTATGCAA</genome_strand>
        <mrna_strand>GACAAACTTCCAAATCCACTACCATCATTCTTGTTGATTTTATTTTCTGCAAATCTCAATTATTCTTCTCCTTTGCTTCGTTTTTTGAGTTGGGTTTTCTTCATTTTCCATAAAAGATTACTCTTTTGGATAGTTTTTTGGCTTAATAATCAGAGACTCAATCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTATTTGTGGTCAGCTTCATGGATTCTCTACAGTCTGTTGTGTCACCATTTAAGGGTTCCTCCGTTTTCGCGGACTCTGAGAAACAAAGCAATGAATTTTTCAGCAAGAACCCTTCTGGCCTATCCCGGGGAATTTCTGCTCATACAGAAGAGGCCGAAATCTGCAACATGGAGGACTTTATTGGTGTTCTCGACGTGTACGTACATCAGGGTAGAGATATCCACAACATCTGCATTTACCCATAAACAAGATGTTTATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E478566" ref_strand="+" ref_description="SGN-E478566 [cSTD-5-L2]">
      <seq>gacaaacttccaaatccactaccatcattcttgttgattttattctctgcaaatctcaattattcttctcctttgcttcgttttttgagttgggttttcttcattttccataaaagattactcttttggatagttttttggcttaataatcagagactcaatctgttctatttgtggtcagcttcatggattctctacagtctgttgtgtcaccatttaagggttcctccgttttcgcggactctgagaagcaaagcaatgaatttttcagcaagaacccttctggcctatcccggggaatttctgctcatacagaggaggccgaagtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="77428" stop="79980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77728" g_stop="77891" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77892" i_stop="79513" i_length="1622">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79514" g_stop="79680" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="331" r_length="167" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E478566" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77728" e_stop="77891"/>
          <exon e_start="79514" e_stop="79680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAACTTCCAAATCCACTATCATCATTCTTGTTGATTTTATTCTCTGCAAATCACAATTATTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTGGTAAAGAATTGGGTTCTTGGACTTTTAGTTGTTTATGTTGTTATTCTTTGACTTTGTTCTGTTTTTTGCTTGTTTAGTTTCTGAGTTGAGACTGTTTTCTGTTCTTGATTTTGAGGTGTGTTTTGTGTTTTTTTTTTTGTCTTGAAGGGGAAAAGGGGTTAAAGATTGTAGCTTTGTTCATGTAGATTTGGTGCAGGATTTAAGTTGAATAGTTAAGGGGAAAGGTAAAGATTGTGGCTTTATGCATTCTCATGGGTGCTGCACAGTTAAAACACTTGTAGGTTTATATACTTTATCTTTGGTGTCTGAGTTTAGTTTTAACACTTTGTGAGGAAGTTAAAGATTGTAGCTTTATTTGCTTTTCTGAGGTGCTGAATGGTTAGTACTTTATGGGGGTTCTGTTTGTAGGTTTATTTATTTTATCTTTGGTGTCTGAGTTAAGTTTAACCCTTTGGTAGGATTGGAAGTTAAAGATTGTTATCTTTATTTGCTTCTCAGAGGTGCTGGATTAGTTAATACTTTATGGGGTTCTGTTTATTTTTAGGATCAGAGCTGTGTGATTTGTTTCTTTAAGGAGGGAACCTGAGTTTTGAAGTGATTCTTTTTGGTGTGTTTTGGGGTTTTGTCTCTCCTTCCTTTTAGCTTTTTTTCAGTTTGGTATGAGTAAAGCTGAATTCTTTTTGAAAATAGGAGAATAGATTGAGTTAACTAGTTGACTAGCTTGGAGCAACGGTAAAGTTGTATCAGTGTGACCTATAAGTGTTTGAGTGGTGGAATAACGAGTGATGATTGTAGCAGGGTAGACTGTCTACATCACACCTCTTAGGATGCTTTGTGCACTTGGCTTCTATTTTTTTTAGGAGGTTATTCTTTTGATTCTTTAGCATAATTTCGGTATATTTCCTGATTTTGACTGTTTCTGCCTTCTATGCTATATTATTCTTCATCTTAAAATCAATTAACATGATGCTCCAATCTCAATCTTTCACTTCAGGGTTATTTTTGTTCTATTCGAGGAAAAAGATTTCATTTTTGTTTCCATTTACTTCTTTCTGTAATGAATTGTACATGTGTGGAATTGTTCTTCTTCTTGACATGATCTTGTTGTTATCTTTGATCCTTTATTTGCCATGTTATCATTTATGAGCTCTGAATAATTGTCACTTGGTCCTAATATGTATCTGAGTTAGGTTAACGAGTTTATTCGTTAAGGTTTCACTTTAAATAAAGCTTCTAGTTCTTGTTTGATGGAGCATGTTACACAATAGGTAAATTCCACATTGAAATGAGAGATACGTACACATTTTGGCTCGATGATTGCATAGCCCAAGGGACAAATCCATAAGGTCTGTAGGGTCAAAGTGGACAATACGTATCATGGGTTTGGGCTGTGACATATAGTGTGGAGAGACCATTCGTTGGGAACTCCAGTATAGTTGTTGTGTGCTCCAAAACAAGTTTGTGTTAAACAAATATATTTCTACTCCTTCAATTACTAGCCGTTCCTCTGTTATAAGCTATTTAATTTGTGGAGATCATTCAGTTTTTGTTCATAGCTATGTGTTCAGTATTAGCCGATGTGATATCTGATATTGATCTTATCCTTCGATTTTCTTAGGTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTG</genome_strand>
        <mrna_strand>GACAAACTTCCAAATCCACTACCATCATTCTTGTTGATTTTATTCTCTGCAAATCTCAATTATTCTTCTCCTTTGCTTCGTTTTTTGAGTTGGGTTTTCTTCATTTTCCATAAAAGATTACTCTTTTGGATAGTTTTTTGGCTTAATAATCAGAGACTCAATCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTATTTGTGGTCAGCTTCATGGATTCTCTACAGTCTGTTGTGTCACCATTTAAGGGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACCCTTCTGGCCTATCCCGGGGAATTTCTGCTCATACAGAGGAGGCCGAAGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E447948" ref_strand="+" ref_description="SGN-E447948 [cSTS-1-E6]">
      <seq>aaacttccaaatccactaccatcattcttgttgattttattctctgcaaatctcaattattcttctcctttgcttcgttttttgagttgggttttcttcattttccataaaagattactcttttggatagttttttggcttaataatcagagactcaatctgttctatttgtggtcagcttcatggattctctacagtctgttgtgtcaccatttaagggttcctccgttttcgcggactctgagaagcaaagcaatgaatttttcagcaagaacccttctggcctatcccggggaatttctgctcatacagaggaggccgaagtctgcaacatggaggacttcattggtgttctcgacgtgtacgtacatcaggctagagatatccacaacatctgcatttaccataaacaagatgtttatgcaaaactttgccttacaagtgatcctgaaagttcagtctccactcaaaccattaatggcggtgggaaaagtccagtcttcaatgaaaatctaaggctcaatgttcgtacgataaaatgtttctgtaaatgtgagatatggatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="77431" stop="80222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77731" g_stop="77891" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77892" i_stop="79513" i_length="1622">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79514" g_stop="79922" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="570" r_length="409" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E447948" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77731" e_stop="77891"/>
          <exon e_start="79514" e_stop="79922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCCAAATCCACTATCATCATTCTTGTTGATTTTATTCTCTGCAAATCACAATTATTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTGGTAAAGAATTGGGTTCTTGGACTTTTAGTTGTTTATGTTGTTATTCTTTGACTTTGTTCTGTTTTTTGCTTGTTTAGTTTCTGAGTTGAGACTGTTTTCTGTTCTTGATTTTGAGGTGTGTTTTGTGTTTTTTTTTTTGTCTTGAAGGGGAAAAGGGGTTAAAGATTGTAGCTTTGTTCATGTAGATTTGGTGCAGGATTTAAGTTGAATAGTTAAGGGGAAAGGTAAAGATTGTGGCTTTATGCATTCTCATGGGTGCTGCACAGTTAAAACACTTGTAGGTTTATATACTTTATCTTTGGTGTCTGAGTTTAGTTTTAACACTTTGTGAGGAAGTTAAAGATTGTAGCTTTATTTGCTTTTCTGAGGTGCTGAATGGTTAGTACTTTATGGGGGTTCTGTTTGTAGGTTTATTTATTTTATCTTTGGTGTCTGAGTTAAGTTTAACCCTTTGGTAGGATTGGAAGTTAAAGATTGTTATCTTTATTTGCTTCTCAGAGGTGCTGGATTAGTTAATACTTTATGGGGTTCTGTTTATTTTTAGGATCAGAGCTGTGTGATTTGTTTCTTTAAGGAGGGAACCTGAGTTTTGAAGTGATTCTTTTTGGTGTGTTTTGGGGTTTTGTCTCTCCTTCCTTTTAGCTTTTTTTCAGTTTGGTATGAGTAAAGCTGAATTCTTTTTGAAAATAGGAGAATAGATTGAGTTAACTAGTTGACTAGCTTGGAGCAACGGTAAAGTTGTATCAGTGTGACCTATAAGTGTTTGAGTGGTGGAATAACGAGTGATGATTGTAGCAGGGTAGACTGTCTACATCACACCTCTTAGGATGCTTTGTGCACTTGGCTTCTATTTTTTTTAGGAGGTTATTCTTTTGATTCTTTAGCATAATTTCGGTATATTTCCTGATTTTGACTGTTTCTGCCTTCTATGCTATATTATTCTTCATCTTAAAATCAATTAACATGATGCTCCAATCTCAATCTTTCACTTCAGGGTTATTTTTGTTCTATTCGAGGAAAAAGATTTCATTTTTGTTTCCATTTACTTCTTTCTGTAATGAATTGTACATGTGTGGAATTGTTCTTCTTCTTGACATGATCTTGTTGTTATCTTTGATCCTTTATTTGCCATGTTATCATTTATGAGCTCTGAATAATTGTCACTTGGTCCTAATATGTATCTGAGTTAGGTTAACGAGTTTATTCGTTAAGGTTTCACTTTAAATAAAGCTTCTAGTTCTTGTTTGATGGAGCATGTTACACAATAGGTAAATTCCACATTGAAATGAGAGATACGTACACATTTTGGCTCGATGATTGCATAGCCCAAGGGACAAATCCATAAGGTCTGTAGGGTCAAAGTGGACAATACGTATCATGGGTTTGGGCTGTGACATATAGTGTGGAGAGACCATTCGTTGGGAACTCCAGTATAGTTGTTGTGTGCTCCAAAACAAGTTTGTGTTAAACAAATATATTTCTACTCCTTCAATTACTAGCCGTTCCTCTGTTATAAGCTATTTAATTTGTGGAGATCATTCAGTTTTTGTTCATAGCTATGTGTTCAGTATTAGCCGATGTGATATCTGATATTGATCTTATCCTTCGATTTTCTTAGGTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGA</genome_strand>
        <mrna_strand>AAACTTCCAAATCCACTACCATCATTCTTGTTGATTTTATTCTCTGCAAATCTCAATTATTCTTCTCCTTTGCTTCGTTTTTTGAGTTGGGTTTTCTTCATTTTCCATAAAAGATTACTCTTTTGGATAGTTTTTTGGCTTAATAATCAGAGACTCAATCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTATTTGTGGTCAGCTTCATGGATTCTCTACAGTCTGTTGTGTCACCATTTAAGGGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACCCTTCTGGCCTATCCCGGGGAATTTCTGCTCATACAGAGGAGGCCGAAGTCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTTCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAATGAAAATCTAAGGCTCAATGTTCGTACGATAAAATGTTTCTGTAAATGTGAGATATGGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E478656" ref_strand="+" ref_description="SGN-E478656 [cSTD-6-K18]">
      <seq>atccactaccatcattcttgttgattttattctctgcaaatctcaattattcttctcctttgcttcgttttttgagttgggttttcttcattttccataaaagattactcttttggatagttttttggcttaataatcagagactcaatctgttctatttgtggtcagcttcatggattctctacagtctgttgtgtcaccatttaagggttcctccgttttcgcggactctgagaagcaaagcaatgaatttttcagcaagaacccttctggcctatcccggggaatttctgctcatacagaggaggccgaagtctgcaacatggaggacttcattggtgttctcgacgtgtacgtacatcaggctagagatantccacacatctgcatttaccataaacaagatgtttatgcaaaactttgccttacaagtgatccctgaagttcagtctccactcaaaccattaatggcggtgggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="77441" stop="80143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77741" g_stop="77891" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77892" i_stop="79513" i_length="1622">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79514" g_stop="79843" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="481" r_length="330" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E478656" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77741" e_stop="77891"/>
          <exon e_start="79514" e_stop="79843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCACTATCATCATTCTTGTTGATTTTATTCTCTGCAAATCACAATTATTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTGGTAAAGAATTGGGTTCTTGGACTTTTAGTTGTTTATGTTGTTATTCTTTGACTTTGTTCTGTTTTTTGCTTGTTTAGTTTCTGAGTTGAGACTGTTTTCTGTTCTTGATTTTGAGGTGTGTTTTGTGTTTTTTTTTTTGTCTTGAAGGGGAAAAGGGGTTAAAGATTGTAGCTTTGTTCATGTAGATTTGGTGCAGGATTTAAGTTGAATAGTTAAGGGGAAAGGTAAAGATTGTGGCTTTATGCATTCTCATGGGTGCTGCACAGTTAAAACACTTGTAGGTTTATATACTTTATCTTTGGTGTCTGAGTTTAGTTTTAACACTTTGTGAGGAAGTTAAAGATTGTAGCTTTATTTGCTTTTCTGAGGTGCTGAATGGTTAGTACTTTATGGGGGTTCTGTTTGTAGGTTTATTTATTTTATCTTTGGTGTCTGAGTTAAGTTTAACCCTTTGGTAGGATTGGAAGTTAAAGATTGTTATCTTTATTTGCTTCTCAGAGGTGCTGGATTAGTTAATACTTTATGGGGTTCTGTTTATTTTTAGGATCAGAGCTGTGTGATTTGTTTCTTTAAGGAGGGAACCTGAGTTTTGAAGTGATTCTTTTTGGTGTGTTTTGGGGTTTTGTCTCTCCTTCCTTTTAGCTTTTTTTCAGTTTGGTATGAGTAAAGCTGAATTCTTTTTGAAAATAGGAGAATAGATTGAGTTAACTAGTTGACTAGCTTGGAGCAACGGTAAAGTTGTATCAGTGTGACCTATAAGTGTTTGAGTGGTGGAATAACGAGTGATGATTGTAGCAGGGTAGACTGTCTACATCACACCTCTTAGGATGCTTTGTGCACTTGGCTTCTATTTTTTTTAGGAGGTTATTCTTTTGATTCTTTAGCATAATTTCGGTATATTTCCTGATTTTGACTGTTTCTGCCTTCTATGCTATATTATTCTTCATCTTAAAATCAATTAACATGATGCTCCAATCTCAATCTTTCACTTCAGGGTTATTTTTGTTCTATTCGAGGAAAAAGATTTCATTTTTGTTTCCATTTACTTCTTTCTGTAATGAATTGTACATGTGTGGAATTGTTCTTCTTCTTGACATGATCTTGTTGTTATCTTTGATCCTTTATTTGCCATGTTATCATTTATGAGCTCTGAATAATTGTCACTTGGTCCTAATATGTATCTGAGTTAGGTTAACGAGTTTATTCGTTAAGGTTTCACTTTAAATAAAGCTTCTAGTTCTTGTTTGATGGAGCATGTTACACAATAGGTAAATTCCACATTGAAATGAGAGATACGTACACATTTTGGCTCGATGATTGCATAGCCCAAGGGACAAATCCATAAGGTCTGTAGGGTCAAAGTGGACAATACGTATCATGGGTTTGGGCTGTGACATATAGTGTGGAGAGACCATTCGTTGGGAACTCCAGTATAGTTGTTGTGTGCTCCAAAACAAGTTTGTGTTAAACAAATATATTTCTACTCCTTCAATTACTAGCCGTTCCTCTGTTATAAGCTATTTAATTTGTGGAGATCATTCAGTTTTTGTTCATAGCTATGTGTTCAGTATTAGCCGATGTGATATCTGATATTGATCTTATCCTTCGATTTTCTTAGGTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATA-TCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAA</genome_strand>
        <mrna_strand>ATCCACTACCATCATTCTTGTTGATTTTATTCTCTGCAAATCTCAATTATTCTTCTCCTTTGCTTCGTTTTTTGAGTTGGGTTTTCTTCATTTTCCATAAAAGATTACTCTTTTGGATAGTTTTTTGGCTTAATAATCAGAGACTCAATCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTATTTGTGGTCAGCTTCATGGATTCTCTACAGTCTGTTGTGTCACCATTTAAGGGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACCCTTCTGGCCTATCCCGGGGAATTTCTGCTCATACAGAGGAGGCCGAAGTCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATANTCCAC-ACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCCTGAAGTTCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E464677" ref_strand="+" ref_description="SGN-E464677 [cPRO-18-B16]">
      <seq>catcattcttgttgattttattctctgcaaatctcaattattcttctcctttgcttcgttttttgagttggattttcttcattttccataaaagattactcttttggatagttttttggcttaataatcagagactcaatctgttctatttgtggtcagcttcatggattctccacagtctgttgtgtcaccatttaagggttcctccgttttcgcggactctgagaagcaaaacaatgaatttttcagcaagaacccttctggcctatcccggggaatttctgctcatagagaggagggcgaagtctgcaacatggaggaccacattggtggtctcgacgtgtacgtacatcagggtagagatatccacaacatctgcatttaccataaacaagatggttatgccaaactttgccttaccagtgatcctgaaagtgcagtctccactcacaccattaatggcggtggaaaaagtccagtcttccatgaaaatctaagggtccatggtcgtaccataaaatggtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="77450" stop="80197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77750" g_stop="77891" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77892" i_stop="79513" i_length="1622">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79514" g_stop="79897" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="526" r_length="384" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E464677" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E464677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77750" e_stop="77891"/>
          <exon e_start="79514" e_stop="79897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCATTCTTGTTGATTTTATTCTCTGCAAATCACAATTATTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTGGTAAAGAATTGGGTTCTTGGACTTTTAGTTGTTTATGTTGTTATTCTTTGACTTTGTTCTGTTTTTTGCTTGTTTAGTTTCTGAGTTGAGACTGTTTTCTGTTCTTGATTTTGAGGTGTGTTTTGTGTTTTTTTTTTTGTCTTGAAGGGGAAAAGGGGTTAAAGATTGTAGCTTTGTTCATGTAGATTTGGTGCAGGATTTAAGTTGAATAGTTAAGGGGAAAGGTAAAGATTGTGGCTTTATGCATTCTCATGGGTGCTGCACAGTTAAAACACTTGTAGGTTTATATACTTTATCTTTGGTGTCTGAGTTTAGTTTTAACACTTTGTGAGGAAGTTAAAGATTGTAGCTTTATTTGCTTTTCTGAGGTGCTGAATGGTTAGTACTTTATGGGGGTTCTGTTTGTAGGTTTATTTATTTTATCTTTGGTGTCTGAGTTAAGTTTAACCCTTTGGTAGGATTGGAAGTTAAAGATTGTTATCTTTATTTGCTTCTCAGAGGTGCTGGATTAGTTAATACTTTATGGGGTTCTGTTTATTTTTAGGATCAGAGCTGTGTGATTTGTTTCTTTAAGGAGGGAACCTGAGTTTTGAAGTGATTCTTTTTGGTGTGTTTTGGGGTTTTGTCTCTCCTTCCTTTTAGCTTTTTTTCAGTTTGGTATGAGTAAAGCTGAATTCTTTTTGAAAATAGGAGAATAGATTGAGTTAACTAGTTGACTAGCTTGGAGCAACGGTAAAGTTGTATCAGTGTGACCTATAAGTGTTTGAGTGGTGGAATAACGAGTGATGATTGTAGCAGGGTAGACTGTCTACATCACACCTCTTAGGATGCTTTGTGCACTTGGCTTCTATTTTTTTTAGGAGGTTATTCTTTTGATTCTTTAGCATAATTTCGGTATATTTCCTGATTTTGACTGTTTCTGCCTTCTATGCTATATTATTCTTCATCTTAAAATCAATTAACATGATGCTCCAATCTCAATCTTTCACTTCAGGGTTATTTTTGTTCTATTCGAGGAAAAAGATTTCATTTTTGTTTCCATTTACTTCTTTCTGTAATGAATTGTACATGTGTGGAATTGTTCTTCTTCTTGACATGATCTTGTTGTTATCTTTGATCCTTTATTTGCCATGTTATCATTTATGAGCTCTGAATAATTGTCACTTGGTCCTAATATGTATCTGAGTTAGGTTAACGAGTTTATTCGTTAAGGTTTCACTTTAAATAAAGCTTCTAGTTCTTGTTTGATGGAGCATGTTACACAATAGGTAAATTCCACATTGAAATGAGAGATACGTACACATTTTGGCTCGATGATTGCATAGCCCAAGGGACAAATCCATAAGGTCTGTAGGGTCAAAGTGGACAATACGTATCATGGGTTTGGGCTGTGACATATAGTGTGGAGAGACCATTCGTTGGGAACTCCAGTATAGTTGTTGTGTGCTCCAAAACAAGTTTGTGTTAAACAAATATATTTCTACTCCTTCAATTACTAGCCGTTCCTCTGTTATAAGCTATTTAATTTGTGGAGATCATTCAGTTTTTGTTCATAGCTATGTGTTCAGTATTAGCCGATGTGATATCTGATATTGATCTTATCCTTCGATTTTCTTAGGTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCT</genome_strand>
        <mrna_strand>CATCATTCTTGTTGATTTTATTCTCTGCAAATCTCAATTATTCTTCTCCTTTGCTTCGTTTTTTGAGTTGGATTTTCTTCATTTTCCATAAAAGATTACTCTTTTGGATAGTTTTTTGGCTTAATAATCAGAGACTCAATCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGGGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAACAATGAATTTTTCAGCAAGAACCCTTCTGGCCTATCCCGGGGAATTTCTGCTCATAGAGAGGAGGGCGAAGTCTGCAACATGGAGGACCACATTGGTGGTCTCGACGTGTACGTACATCAGGGTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGGTTATGCCAAACTTTGCCTTACCAGTGATCCTGAAAGTGCAGTCTCCACTCACACCATTAATGGCGGTGGAAAAAGTCCAGTCTTCCATGAAAATCTAAGGGTCCATGGTCGTACCATAAAATGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E453546" ref_strand="+" ref_description="SGN-E453546 [cSTS-20-I10]">
      <seq>cctcgtgcccgattctctgcaaatctcaattacttcttctcctttgcttcgttttttgagttggattttcttcattttccataaaagcttactcttttggatagttttttggcttaataatcagagactcaatctgggaaaactgaaaagaaggttaaagattgtagctttgttcttgtagatttggtgctggatttaagttgaatagttgaggagaaaggttctatttgtggtcagcttcatggattctccacagtctgttgtgtcaccatttaagggttcctccgttttcgcggactctgagaagcaaaacaatgaatttttcagcaagaacccttctggcctatcccggggaatttctgctcatagagaggaggccgaagtctgcaacatggaggaccacattggtgttctcgacgtgtacgtacatcaggctagagatatccacaacatctgcatttaccataaacaagatgtttatgcaaaactttgccttacaagtgatcctgaaagtgcagtctccactcacaccattaatggcggtggaaaaagtccagtcttcaatgaaaatctaaggctcaatgttcgtacaataaaatgttctgttaaatgtgagatatggatgatgagcanggtgaggaattatttggaagaccaattgttgggatttgcactggtccccctatctgaaatcctcatgaaaaatggaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="77469" stop="80307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77757" g_stop="77900" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.826"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77901" i_stop="78042" i_length="142">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.997" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78043" g_stop="78119" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="220" r_length="78" r_score="0.883"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78120" i_stop="79513" i_length="1394">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79514" g_stop="80005" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="712" r_length="492" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E453546" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77757" e_stop="77900"/>
          <exon e_start="78043" e_stop="78119"/>
          <exon e_start="79514" e_stop="80005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTGATTTTATTCTCTGCAAATCACAATTA-TTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTGGTAAAGAATTGGGTTCTTGGACTTTTAGTTGTTTATGTTGTTATTCTTTGACTTTGTTCTGTTTTTTGCTTGTTTAGTTTCTGAGTTGAGACTGTTTTCTGTTCTTGATTTTGAGGTGTGTTTTGTGTTTTTTTTTTTGTCTTGAAGGGGAAAAG-GGGTTAAAGATTGTAGCTTTGTTCATGTAGATTTGGTGCAGGATTTAAGTTGAATAGTTAAGGGGAAAGGTAAAGATTGTGGCTTTATGCATTCTCATGGGTGCTGCACAGTTAAAACACTTGTAGGTTTATATACTTTATCTTTGGTGTCTGAGTTTAGTTTTAACACTTTGTGAGGAAGTTAAAGATTGTAGCTTTATTTGCTTTTCTGAGGTGCTGAATGGTTAGTACTTTATGGGGGTTCTGTTTGTAGGTTTATTTATTTTATCTTTGGTGTCTGAGTTAAGTTTAACCCTTTGGTAGGATTGGAAGTTAAAGATTGTTATCTTTATTTGCTTCTCAGAGGTGCTGGATTAGTTAATACTTTATGGGGTTCTGTTTATTTTTAGGATCAGAGCTGTGTGATTTGTTTCTTTAAGGAGGGAACCTGAGTTTTGAAGTGATTCTTTTTGGTGTGTTTTGGGGTTTTGTCTCTCCTTCCTTTTAGCTTTTTTTCAGTTTGGTATGAGTAAAGCTGAATTCTTTTTGAAAATAGGAGAATAGATTGAGTTAACTAGTTGACTAGCTTGGAGCAACGGTAAAGTTGTATCAGTGTGACCTATAAGTGTTTGAGTGGTGGAATAACGAGTGATGATTGTAGCAGGGTAGACTGTCTACATCACACCTCTTAGGATGCTTTGTGCACTTGGCTTCTATTTTTTTTAGGAGGTTATTCTTTTGATTCTTTAGCATAATTTCGGTATATTTCCTGATTTTGACTGTTTCTGCCTTCTATGCTATATTATTCTTCATCTTAAAATCAATTAACATGATGCTCCAATCTCAATCTTTCACTTCAGGGTTATTTTTGTTCTATTCGAGGAAAAAGATTTCATTTTTGTTTCCATTTACTTCTTTCTGTAATGAATTGTACATGTGTGGAATTGTTCTTCTTCTTGACATGATCTTGTTGTTATCTTTGATCCTTTATTTGCCATGTTATCATTTATGAGCTCTGAATAATTGTCACTTGGTCCTAATATGTATCTGAGTTAGGTTAACGAGTTTATTCGTTAAGGTTTCACTTTAAATAAAGCTTCTAGTTCTTGTTTGATGGAGCATGTTACACAATAGGTAAATTCCACATTGAAATGAGAGATACGTACACATTTTGGCTCGATGATTGCATAGCCCAAGGGACAAATCCATAAGGTCTGTAGGGTCAAAGTGGACAATACGTATCATGGGTTTGGGCTGTGACATATAGTGTGGAGAGACCATTCGTTGGGAACTCCAGTATAGTTGTTGTGTGCTCCAAAACAAGTTTGTGTTAAACAAATATATTTCTACTCCTTCAATTACTAGCCGTTCCTCTGTTATAAGCTATTTAATTTGTGGAGATCATTCAGTTTTTGTTCATAGCTATGTGTTCAGTATTAGCCGATGTGATATCTGATATTGATCTTATCCTTCGATTTTCTTAGGTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAG</genome_strand>
        <mrna_strand>CCTCGTG-CCCGATTCTCTGCAAATCTCAATTACTTCTTCTCCTTTGCTTCGTTTTTTGAGTTGGATTTTCTTCATTTTCCATAAAAGCTTACTCTTTTGGATAGTTTTTTGGCTTAATAATCAGAGACTCAATCTG--GGAAAA..............................................................................................................................................CTGAAAAGAAGGTTAAAGATTGTAGCTTTGTTCTTGTAGATTTGGTGCTGGATTTAAGTTGAATAGTTGAGGAGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGGGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAACAATGAATTTTTCAGCAAGAACCCTTCTGGCCTATCCCGGGGAATTTCTGCTCATAGAGAGGAGGCCGAAGTCTGCAACATGGAGGACCACATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCACACCATTAATGGCGGTGGAAAAAGTCCAGTCTTCAATGAAAATCTAAGGCTCAATGTTCGTACAATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCANGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTGGTCCCCCTATCTGAAATCCTCATGAAAAATGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E300416" ref_strand="+" ref_description="SGN-E300416 [cLET-45-C10]">
      <seq>ttgattttattctctgcaaatcacaattattctcatcctttgcttcgttttaagagttgggttttcttcattttccataaaagatcactcttttgggtagatttttggcttgataatcagagactcagtctgttggttatatttgtggtcagcttcatggattctccacagtctgttgtgtcaccatttaagagttcctccgttttcgcggactctgagaagcaaagcaatgaatttttcagcaagaacgcttctggtctatcccggggaatttctgctcatagagaggatgttgaaatctgcaacatggaggacttcattggtgttctcgacgtgtacgtacatcaggctagagatatccacaacatctgcatttaccataaacaagatgtttatgcaaaactttgccttacaagtgatcctgaaagtgcagtctccactcaaaccattaatggcggtgggaaaagtccagtcttcaacgaaaatctaaagctcaatgttcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="77461" stop="80315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77761" g_stop="77895" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77896" i_stop="79513" i_length="1618">
            <donor d_prob="0.287" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79514" g_stop="80015" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="637" r_length="502" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E300416" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77761" e_stop="77895"/>
          <exon e_start="79514" e_stop="80015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTTATTCTCTGCAAATCACAATTATTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTGGTAAAGAATTGGGTTCTTGGACTTTTAGTTGTTTATGTTGTTATTCTTTGACTTTGTTCTGTTTTTTGCTTGTTTAGTTTCTGAGTTGAGACTGTTTTCTGTTCTTGATTTTGAGGTGTGTTTTGTGTTTTTTTTTTTGTCTTGAAGGGGAAAAGGGGTTAAAGATTGTAGCTTTGTTCATGTAGATTTGGTGCAGGATTTAAGTTGAATAGTTAAGGGGAAAGGTAAAGATTGTGGCTTTATGCATTCTCATGGGTGCTGCACAGTTAAAACACTTGTAGGTTTATATACTTTATCTTTGGTGTCTGAGTTTAGTTTTAACACTTTGTGAGGAAGTTAAAGATTGTAGCTTTATTTGCTTTTCTGAGGTGCTGAATGGTTAGTACTTTATGGGGGTTCTGTTTGTAGGTTTATTTATTTTATCTTTGGTGTCTGAGTTAAGTTTAACCCTTTGGTAGGATTGGAAGTTAAAGATTGTTATCTTTATTTGCTTCTCAGAGGTGCTGGATTAGTTAATACTTTATGGGGTTCTGTTTATTTTTAGGATCAGAGCTGTGTGATTTGTTTCTTTAAGGAGGGAACCTGAGTTTTGAAGTGATTCTTTTTGGTGTGTTTTGGGGTTTTGTCTCTCCTTCCTTTTAGCTTTTTTTCAGTTTGGTATGAGTAAAGCTGAATTCTTTTTGAAAATAGGAGAATAGATTGAGTTAACTAGTTGACTAGCTTGGAGCAACGGTAAAGTTGTATCAGTGTGACCTATAAGTGTTTGAGTGGTGGAATAACGAGTGATGATTGTAGCAGGGTAGACTGTCTACATCACACCTCTTAGGATGCTTTGTGCACTTGGCTTCTATTTTTTTTAGGAGGTTATTCTTTTGATTCTTTAGCATAATTTCGGTATATTTCCTGATTTTGACTGTTTCTGCCTTCTATGCTATATTATTCTTCATCTTAAAATCAATTAACATGATGCTCCAATCTCAATCTTTCACTTCAGGGTTATTTTTGTTCTATTCGAGGAAAAAGATTTCATTTTTGTTTCCATTTACTTCTTTCTGTAATGAATTGTACATGTGTGGAATTGTTCTTCTTCTTGACATGATCTTGTTGTTATCTTTGATCCTTTATTTGCCATGTTATCATTTATGAGCTCTGAATAATTGTCACTTGGTCCTAATATGTATCTGAGTTAGGTTAACGAGTTTATTCGTTAAGGTTTCACTTTAAATAAAGCTTCTAGTTCTTGTTTGATGGAGCATGTTACACAATAGGTAAATTCCACATTGAAATGAGAGATACGTACACATTTTGGCTCGATGATTGCATAGCCCAAGGGACAAATCCATAAGGTCTGTAGGGTCAAAGTGGACAATACGTATCATGGGTTTGGGCTGTGACATATAGTGTGGAGAGACCATTCGTTGGGAACTCCAGTATAGTTGTTGTGTGCTCCAAAACAAGTTTGTGTTAAACAAATATATTTCTACTCCTTCAATTACTAGCCGTTCCTCTGTTATAAGCTATTTAATTTGTGGAGATCATTCAGTTTTTGTTCATAGCTATGTGTTCAGTATTAGCCGATGTGATATCTGATATTGATCTTATCCTTCGATTTTCTTAGGTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAG</genome_strand>
        <mrna_strand>TTGATTTTATTCTCTGCAAATCACAATTATTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E265454" ref_strand="+" ref_description="SGN-E265454 [cLEI-9-P13]">
      <seq>ctctgcaaatcacaattattctcatcctttgcttcgttttaagagttgggttttcttcattttccataaaagatcactcttttgggtagatttttggcttgataatcagagactcagtctgttggttatatttgtggtcagcttcatggattctccacagtctgttgtgtcaccatttaagagttcctccgttttcgcggactctgagaagcaaagcaatgaatttttcagcaagaacgcttctggtctatcccggggaatttctgctcatagagaggatgttgaaatctgcaacatggaggacttcattggtgttctcgacgtgtacgtacatcaggctagagatatccacaacatctgcatttaccataaacaagatgtttatgcaaaactttgccttacaagtgatcctgaaagtgcagtctccactcaaaccattaatggcggtgggaaaagtccagtcttcaacgaaaatctaaagctcaatgttcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcagggtgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="77472" stop="80234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77772" g_stop="77895" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77896" i_stop="79513" i_length="1618">
            <donor d_prob="0.287" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79514" g_stop="79934" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="545" r_length="421" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E265454" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77772" e_stop="77895"/>
          <exon e_start="79514" e_stop="79934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGCAAATCACAATTATTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTGGTAAAGAATTGGGTTCTTGGACTTTTAGTTGTTTATGTTGTTATTCTTTGACTTTGTTCTGTTTTTTGCTTGTTTAGTTTCTGAGTTGAGACTGTTTTCTGTTCTTGATTTTGAGGTGTGTTTTGTGTTTTTTTTTTTGTCTTGAAGGGGAAAAGGGGTTAAAGATTGTAGCTTTGTTCATGTAGATTTGGTGCAGGATTTAAGTTGAATAGTTAAGGGGAAAGGTAAAGATTGTGGCTTTATGCATTCTCATGGGTGCTGCACAGTTAAAACACTTGTAGGTTTATATACTTTATCTTTGGTGTCTGAGTTTAGTTTTAACACTTTGTGAGGAAGTTAAAGATTGTAGCTTTATTTGCTTTTCTGAGGTGCTGAATGGTTAGTACTTTATGGGGGTTCTGTTTGTAGGTTTATTTATTTTATCTTTGGTGTCTGAGTTAAGTTTAACCCTTTGGTAGGATTGGAAGTTAAAGATTGTTATCTTTATTTGCTTCTCAGAGGTGCTGGATTAGTTAATACTTTATGGGGTTCTGTTTATTTTTAGGATCAGAGCTGTGTGATTTGTTTCTTTAAGGAGGGAACCTGAGTTTTGAAGTGATTCTTTTTGGTGTGTTTTGGGGTTTTGTCTCTCCTTCCTTTTAGCTTTTTTTCAGTTTGGTATGAGTAAAGCTGAATTCTTTTTGAAAATAGGAGAATAGATTGAGTTAACTAGTTGACTAGCTTGGAGCAACGGTAAAGTTGTATCAGTGTGACCTATAAGTGTTTGAGTGGTGGAATAACGAGTGATGATTGTAGCAGGGTAGACTGTCTACATCACACCTCTTAGGATGCTTTGTGCACTTGGCTTCTATTTTTTTTAGGAGGTTATTCTTTTGATTCTTTAGCATAATTTCGGTATATTTCCTGATTTTGACTGTTTCTGCCTTCTATGCTATATTATTCTTCATCTTAAAATCAATTAACATGATGCTCCAATCTCAATCTTTCACTTCAGGGTTATTTTTGTTCTATTCGAGGAAAAAGATTTCATTTTTGTTTCCATTTACTTCTTTCTGTAATGAATTGTACATGTGTGGAATTGTTCTTCTTCTTGACATGATCTTGTTGTTATCTTTGATCCTTTATTTGCCATGTTATCATTTATGAGCTCTGAATAATTGTCACTTGGTCCTAATATGTATCTGAGTTAGGTTAACGAGTTTATTCGTTAAGGTTTCACTTTAAATAAAGCTTCTAGTTCTTGTTTGATGGAGCATGTTACACAATAGGTAAATTCCACATTGAAATGAGAGATACGTACACATTTTGGCTCGATGATTGCATAGCCCAAGGGACAAATCCATAAGGTCTGTAGGGTCAAAGTGGACAATACGTATCATGGGTTTGGGCTGTGACATATAGTGTGGAGAGACCATTCGTTGGGAACTCCAGTATAGTTGTTGTGTGCTCCAAAACAAGTTTGTGTTAAACAAATATATTTCTACTCCTTCAATTACTAGCCGTTCCTCTGTTATAAGCTATTTAATTTGTGGAGATCATTCAGTTTTTGTTCATAGCTATGTGTTCAGTATTAGCCGATGTGATATCTGATATTGATCTTATCCTTCGATTTTCTTAGGTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGA</genome_strand>
        <mrna_strand>CTCTGCAAATCACAATTATTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E719516" ref_strand="+" ref_description="SGN-E719516 [FC08AD05]">
      <seq>tcggccgaattgaaaatcacaattattcccatcctttgcttcgttttaagagttgggttttcttcattttccataaaagatcactcttttgggtagatttttggcttgataatcaaagactcagtctgttggttatatttgtggtcagcttcatggattctccacagtctgttgtgtcaccatttaagagttcctccgttttcgcggactctgagaagcaaagcaatgaatttttcagcaagaacgcttctggtctatcccggggaatttctgctcatagagaggatgttgaaatctgcaacatggaggacttcattggtgttctcgacgtgtacgtacatcaggctagagatatccacaacatctgcatttaccataaacaagatgtttatgcaaaactttgccttacaagtgatcctgaaagtgcagtctccactcaaaccattaatggcggtgggaaaagtccagtcttcaacgaaaatctaaagctcaatgttcgtacaataaaatgttctgttaaatgtgagatatggatgatgagcagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattaaaaactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="77475" stop="80442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77778" g_stop="77895" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="131" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77896" i_stop="79513" i_length="1618">
            <donor d_prob="0.287" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79514" g_stop="80142" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="758" r_length="627" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E719516" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77778" e_stop="77895"/>
          <exon e_start="79514" e_stop="80142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCACAATTATTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTGGTAAAGAATTGGGTTCTTGGACTTTTAGTTGTTTATGTTGTTATTCTTTGACTTTGTTCTGTTTTTTGCTTGTTTAGTTTCTGAGTTGAGACTGTTTTCTGTTCTTGATTTTGAGGTGTGTTTTGTGTTTTTTTTTTTGTCTTGAAGGGGAAAAGGGGTTAAAGATTGTAGCTTTGTTCATGTAGATTTGGTGCAGGATTTAAGTTGAATAGTTAAGGGGAAAGGTAAAGATTGTGGCTTTATGCATTCTCATGGGTGCTGCACAGTTAAAACACTTGTAGGTTTATATACTTTATCTTTGGTGTCTGAGTTTAGTTTTAACACTTTGTGAGGAAGTTAAAGATTGTAGCTTTATTTGCTTTTCTGAGGTGCTGAATGGTTAGTACTTTATGGGGGTTCTGTTTGTAGGTTTATTTATTTTATCTTTGGTGTCTGAGTTAAGTTTAACCCTTTGGTAGGATTGGAAGTTAAAGATTGTTATCTTTATTTGCTTCTCAGAGGTGCTGGATTAGTTAATACTTTATGGGGTTCTGTTTATTTTTAGGATCAGAGCTGTGTGATTTGTTTCTTTAAGGAGGGAACCTGAGTTTTGAAGTGATTCTTTTTGGTGTGTTTTGGGGTTTTGTCTCTCCTTCCTTTTAGCTTTTTTTCAGTTTGGTATGAGTAAAGCTGAATTCTTTTTGAAAATAGGAGAATAGATTGAGTTAACTAGTTGACTAGCTTGGAGCAACGGTAAAGTTGTATCAGTGTGACCTATAAGTGTTTGAGTGGTGGAATAACGAGTGATGATTGTAGCAGGGTAGACTGTCTACATCACACCTCTTAGGATGCTTTGTGCACTTGGCTTCTATTTTTTTTAGGAGGTTATTCTTTTGATTCTTTAGCATAATTTCGGTATATTTCCTGATTTTGACTGTTTCTGCCTTCTATGCTATATTATTCTTCATCTTAAAATCAATTAACATGATGCTCCAATCTCAATCTTTCACTTCAGGGTTATTTTTGTTCTATTCGAGGAAAAAGATTTCATTTTTGTTTCCATTTACTTCTTTCTGTAATGAATTGTACATGTGTGGAATTGTTCTTCTTCTTGACATGATCTTGTTGTTATCTTTGATCCTTTATTTGCCATGTTATCATTTATGAGCTCTGAATAATTGTCACTTGGTCCTAATATGTATCTGAGTTAGGTTAACGAGTTTATTCGTTAAGGTTTCACTTTAAATAAAGCTTCTAGTTCTTGTTTGATGGAGCATGTTACACAATAGGTAAATTCCACATTGAAATGAGAGATACGTACACATTTTGGCTCGATGATTGCATAGCCCAAGGGACAAATCCATAAGGTCTGTAGGGTCAAAGTGGACAATACGTATCATGGGTTTGGGCTGTGACATATAGTGTGGAGAGACCATTCGTTGGGAACTCCAGTATAGTTGTTGTGTGCTCCAAAACAAGTTTGTGTTAAACAAATATATTTCTACTCCTTCAATTACTAGCCGTTCCTCTGTTATAAGCTATTTAATTTGTGGAGATCATTCAGTTTTTGTTCATAGCTATGTGTTCAGTATTAGCCGATGTGATATCTGATATTGATCTTATCCTTCGATTTTCTTAGGTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGAT</genome_strand>
        <mrna_strand>AAATCACAATTATTCCCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAAAGACTCAGTCTGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACAATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAAAAACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E721932" ref_strand="+" ref_description="SGN-E721932 [FC15CH04]">
      <seq>gggcgattggcggccaatcggccgaattcccatggggatccgatatcctttgcttcgttttaagagttgggttttcttcattttccataaaagatcactcttttgggtagatttttggcttgataatcagagactcagtctgttggttatatttgtggtcagcttcatggattctccacagtctgttgtgtcaccatttaagagttcctccgttttcgcggactctgagaagcaaagcaatgaatttttcagcaagaacgcttctggtctatcccggggaatttctgctcatagagaggatgttgaaatctgcaacatggaggacttcattggtgttctcgacgtgtacgtacatcaggctagagatatccacaacatctgcatttaccataaacaagatgtttatgcaaaactttgccttacaagtgatcctgaaagtgcagtctccactcaaaccattaatggcggtgggaaaagtccagtcttcaacgaaaatctaaagctcaatgttcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattagaaactgatgcatctcggacagacggcgaagcacgtgagtcccttccaaatgagtttgacaaaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="77495" stop="80501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77795" g_stop="77895" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="145" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77896" i_stop="79513" i_length="1618">
            <donor d_prob="0.287" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79514" g_stop="80201" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="831" r_length="686" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E721932" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77795" e_stop="77895"/>
          <exon e_start="79514" e_stop="80201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTGGTAAAGAATTGGGTTCTTGGACTTTTAGTTGTTTATGTTGTTATTCTTTGACTTTGTTCTGTTTTTTGCTTGTTTAGTTTCTGAGTTGAGACTGTTTTCTGTTCTTGATTTTGAGGTGTGTTTTGTGTTTTTTTTTTTGTCTTGAAGGGGAAAAGGGGTTAAAGATTGTAGCTTTGTTCATGTAGATTTGGTGCAGGATTTAAGTTGAATAGTTAAGGGGAAAGGTAAAGATTGTGGCTTTATGCATTCTCATGGGTGCTGCACAGTTAAAACACTTGTAGGTTTATATACTTTATCTTTGGTGTCTGAGTTTAGTTTTAACACTTTGTGAGGAAGTTAAAGATTGTAGCTTTATTTGCTTTTCTGAGGTGCTGAATGGTTAGTACTTTATGGGGGTTCTGTTTGTAGGTTTATTTATTTTATCTTTGGTGTCTGAGTTAAGTTTAACCCTTTGGTAGGATTGGAAGTTAAAGATTGTTATCTTTATTTGCTTCTCAGAGGTGCTGGATTAGTTAATACTTTATGGGGTTCTGTTTATTTTTAGGATCAGAGCTGTGTGATTTGTTTCTTTAAGGAGGGAACCTGAGTTTTGAAGTGATTCTTTTTGGTGTGTTTTGGGGTTTTGTCTCTCCTTCCTTTTAGCTTTTTTTCAGTTTGGTATGAGTAAAGCTGAATTCTTTTTGAAAATAGGAGAATAGATTGAGTTAACTAGTTGACTAGCTTGGAGCAACGGTAAAGTTGTATCAGTGTGACCTATAAGTGTTTGAGTGGTGGAATAACGAGTGATGATTGTAGCAGGGTAGACTGTCTACATCACACCTCTTAGGATGCTTTGTGCACTTGGCTTCTATTTTTTTTAGGAGGTTATTCTTTTGATTCTTTAGCATAATTTCGGTATATTTCCTGATTTTGACTGTTTCTGCCTTCTATGCTATATTATTCTTCATCTTAAAATCAATTAACATGATGCTCCAATCTCAATCTTTCACTTCAGGGTTATTTTTGTTCTATTCGAGGAAAAAGATTTCATTTTTGTTTCCATTTACTTCTTTCTGTAATGAATTGTACATGTGTGGAATTGTTCTTCTTCTTGACATGATCTTGTTGTTATCTTTGATCCTTTATTTGCCATGTTATCATTTATGAGCTCTGAATAATTGTCACTTGGTCCTAATATGTATCTGAGTTAGGTTAACGAGTTTATTCGTTAAGGTTTCACTTTAAATAAAGCTTCTAGTTCTTGTTTGATGGAGCATGTTACACAATAGGTAAATTCCACATTGAAATGAGAGATACGTACACATTTTGGCTCGATGATTGCATAGCCCAAGGGACAAATCCATAAGGTCTGTAGGGTCAAAGTGGACAATACGTATCATGGGTTTGGGCTGTGACATATAGTGTGGAGAGACCATTCGTTGGGAACTCCAGTATAGTTGTTGTGTGCTCCAAAACAAGTTTGTGTTAAACAAATATATTTCTACTCCTTCAATTACTAGCCGTTCCTCTGTTATAAGCTATTTAATTTGTGGAGATCATTCAGTTTTTGTTCATAGCTATGTGTTCAGTATTAGCCGATGTGATATCTGATATTGATCTTATCCTTCGATTTTCTTAGGTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGA</genome_strand>
        <mrna_strand>ATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E442150" ref_strand="+" ref_description="SGN-E442150 [cSTA-32-I21]">
      <seq>gttttcttcattttccattaaggattactcttttggatagttttttggcttaataatcagagactcaatctgttctatttgtggtcagcttcatggattctccacagtctgttgtgtcaccatttaagggttcctccgttttcgcggactctgagaagcaaagcaatgaatttttcagcaagaacccttctggcctatcccggggaatttctgctcatacagcggaggccgaagtctgcaacatggaggacttcattggtgttcttgacgtgtacgtacatcaggctagagatatccacaacatctgcatttaccataaacaagatgtttatgcaaaactttgccttacaagtgatcctgaaagctcagtctccactcaaaccattaatggcggtgggaaaagtccagtcttcaatgaaaatctaaggctcaatgttcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccctatctgaaatcttcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="77521" stop="80353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77821" g_stop="77891" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77892" i_stop="79513" i_length="1622">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79514" g_stop="80053" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="609" r_length="538" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E442150" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77821" e_stop="77891"/>
          <exon e_start="79514" e_stop="80053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTGGTAAAGAATTGGGTTCTTGGACTTTTAGTTGTTTATGTTGTTATTCTTTGACTTTGTTCTGTTTTTTGCTTGTTTAGTTTCTGAGTTGAGACTGTTTTCTGTTCTTGATTTTGAGGTGTGTTTTGTGTTTTTTTTTTTGTCTTGAAGGGGAAAAGGGGTTAAAGATTGTAGCTTTGTTCATGTAGATTTGGTGCAGGATTTAAGTTGAATAGTTAAGGGGAAAGGTAAAGATTGTGGCTTTATGCATTCTCATGGGTGCTGCACAGTTAAAACACTTGTAGGTTTATATACTTTATCTTTGGTGTCTGAGTTTAGTTTTAACACTTTGTGAGGAAGTTAAAGATTGTAGCTTTATTTGCTTTTCTGAGGTGCTGAATGGTTAGTACTTTATGGGGGTTCTGTTTGTAGGTTTATTTATTTTATCTTTGGTGTCTGAGTTAAGTTTAACCCTTTGGTAGGATTGGAAGTTAAAGATTGTTATCTTTATTTGCTTCTCAGAGGTGCTGGATTAGTTAATACTTTATGGGGTTCTGTTTATTTTTAGGATCAGAGCTGTGTGATTTGTTTCTTTAAGGAGGGAACCTGAGTTTTGAAGTGATTCTTTTTGGTGTGTTTTGGGGTTTTGTCTCTCCTTCCTTTTAGCTTTTTTTCAGTTTGGTATGAGTAAAGCTGAATTCTTTTTGAAAATAGGAGAATAGATTGAGTTAACTAGTTGACTAGCTTGGAGCAACGGTAAAGTTGTATCAGTGTGACCTATAAGTGTTTGAGTGGTGGAATAACGAGTGATGATTGTAGCAGGGTAGACTGTCTACATCACACCTCTTAGGATGCTTTGTGCACTTGGCTTCTATTTTTTTTAGGAGGTTATTCTTTTGATTCTTTAGCATAATTTCGGTATATTTCCTGATTTTGACTGTTTCTGCCTTCTATGCTATATTATTCTTCATCTTAAAATCAATTAACATGATGCTCCAATCTCAATCTTTCACTTCAGGGTTATTTTTGTTCTATTCGAGGAAAAAGATTTCATTTTTGTTTCCATTTACTTCTTTCTGTAATGAATTGTACATGTGTGGAATTGTTCTTCTTCTTGACATGATCTTGTTGTTATCTTTGATCCTTTATTTGCCATGTTATCATTTATGAGCTCTGAATAATTGTCACTTGGTCCTAATATGTATCTGAGTTAGGTTAACGAGTTTATTCGTTAAGGTTTCACTTTAAATAAAGCTTCTAGTTCTTGTTTGATGGAGCATGTTACACAATAGGTAAATTCCACATTGAAATGAGAGATACGTACACATTTTGGCTCGATGATTGCATAGCCCAAGGGACAAATCCATAAGGTCTGTAGGGTCAAAGTGGACAATACGTATCATGGGTTTGGGCTGTGACATATAGTGTGGAGAGACCATTCGTTGGGAACTCCAGTATAGTTGTTGTGTGCTCCAAAACAAGTTTGTGTTAAACAAATATATTTCTACTCCTTCAATTACTAGCCGTTCCTCTGTTATAAGCTATTTAATTTGTGGAGATCATTCAGTTTTTGTTCATAGCTATGTGTTCAGTATTAGCCGATGTGATATCTGATATTGATCTTATCCTTCGATTTTCTTAGGTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCC</genome_strand>
        <mrna_strand>GTTTTCTTCATTTTCCATTAAGGATTACTCTTTTGGATAGTTTTTTGGCTTAATAATCAGAGACTCAATCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGGGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACCCTTCTGGCCTATCCCGGGGAATTTCTGCTCATACAGCGGAGGCCGAAGTCTGCAACATGGAGGACTTCATTGGTGTTCTTGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGCTCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAATGAAAATCTAAGGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCCTATCTGAAATCTTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E443580" ref_strand="+" ref_description="SGN-E443580 [cSTA-38-P14]">
      <seq>gttttcttcattttccattaaggattactgttttggatagttttttggcttaataatcagagactcaatctgttctatttgtggtcagcttcatggattctccacagtctgttgtgtcaccatttaagggttcctccgttttcgcggactctgagaagcaaagcaatgaatttttcagcaagaacccttctggcctatcccggggaatttctgctcatacagcggaggccgaagtctgcaacatggaggacttcattggtgttcttgacgtgtacgtacatcaggctagagatatccacaacatctgcatttaccataaacaagatgtttatgcaaaactttgccttacaagtgatcctgaaagctcagtctccactcaaaccattaatggcggtgggaaaagtccagtcttcaatgaaaatctaaggctcaatgttcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccctatctgaaatcttcatgaaaaatggaaagctagaaaaagagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="77521" stop="80322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77821" g_stop="77891" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.887"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77892" i_stop="79513" i_length="1622">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79514" g_stop="80022" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="580" r_length="509" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E443580" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77821" e_stop="77891"/>
          <exon e_start="79514" e_stop="80022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTGGTAAAGAATTGGGTTCTTGGACTTTTAGTTGTTTATGTTGTTATTCTTTGACTTTGTTCTGTTTTTTGCTTGTTTAGTTTCTGAGTTGAGACTGTTTTCTGTTCTTGATTTTGAGGTGTGTTTTGTGTTTTTTTTTTTGTCTTGAAGGGGAAAAGGGGTTAAAGATTGTAGCTTTGTTCATGTAGATTTGGTGCAGGATTTAAGTTGAATAGTTAAGGGGAAAGGTAAAGATTGTGGCTTTATGCATTCTCATGGGTGCTGCACAGTTAAAACACTTGTAGGTTTATATACTTTATCTTTGGTGTCTGAGTTTAGTTTTAACACTTTGTGAGGAAGTTAAAGATTGTAGCTTTATTTGCTTTTCTGAGGTGCTGAATGGTTAGTACTTTATGGGGGTTCTGTTTGTAGGTTTATTTATTTTATCTTTGGTGTCTGAGTTAAGTTTAACCCTTTGGTAGGATTGGAAGTTAAAGATTGTTATCTTTATTTGCTTCTCAGAGGTGCTGGATTAGTTAATACTTTATGGGGTTCTGTTTATTTTTAGGATCAGAGCTGTGTGATTTGTTTCTTTAAGGAGGGAACCTGAGTTTTGAAGTGATTCTTTTTGGTGTGTTTTGGGGTTTTGTCTCTCCTTCCTTTTAGCTTTTTTTCAGTTTGGTATGAGTAAAGCTGAATTCTTTTTGAAAATAGGAGAATAGATTGAGTTAACTAGTTGACTAGCTTGGAGCAACGGTAAAGTTGTATCAGTGTGACCTATAAGTGTTTGAGTGGTGGAATAACGAGTGATGATTGTAGCAGGGTAGACTGTCTACATCACACCTCTTAGGATGCTTTGTGCACTTGGCTTCTATTTTTTTTAGGAGGTTATTCTTTTGATTCTTTAGCATAATTTCGGTATATTTCCTGATTTTGACTGTTTCTGCCTTCTATGCTATATTATTCTTCATCTTAAAATCAATTAACATGATGCTCCAATCTCAATCTTTCACTTCAGGGTTATTTTTGTTCTATTCGAGGAAAAAGATTTCATTTTTGTTTCCATTTACTTCTTTCTGTAATGAATTGTACATGTGTGGAATTGTTCTTCTTCTTGACATGATCTTGTTGTTATCTTTGATCCTTTATTTGCCATGTTATCATTTATGAGCTCTGAATAATTGTCACTTGGTCCTAATATGTATCTGAGTTAGGTTAACGAGTTTATTCGTTAAGGTTTCACTTTAAATAAAGCTTCTAGTTCTTGTTTGATGGAGCATGTTACACAATAGGTAAATTCCACATTGAAATGAGAGATACGTACACATTTTGGCTCGATGATTGCATAGCCCAAGGGACAAATCCATAAGGTCTGTAGGGTCAAAGTGGACAATACGTATCATGGGTTTGGGCTGTGACATATAGTGTGGAGAGACCATTCGTTGGGAACTCCAGTATAGTTGTTGTGTGCTCCAAAACAAGTTTGTGTTAAACAAATATATTTCTACTCCTTCAATTACTAGCCGTTCCTCTGTTATAAGCTATTTAATTTGTGGAGATCATTCAGTTTTTGTTCATAGCTATGTGTTCAGTATTAGCCGATGTGATATCTGATATTGATCTTATCCTTCGATTTTCTTAGGTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTC</genome_strand>
        <mrna_strand>GTTTTCTTCATTTTCCATTAAGGATTACTGTTTTGGATAGTTTTTTGGCTTAATAATCAGAGACTCAATCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGGGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACCCTTCTGGCCTATCCCGGGGAATTTCTGCTCATACAGCGGAGGCCGAAGTCTGCAACATGGAGGACTTCATTGGTGTTCTTGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGCTCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAATGAAAATCTAAGGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCCTATCTGAAATCTTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E266568" ref_strand="+" ref_description="SGN-E266568 [cLEI-5-P21]">
      <seq>tagatttttggcttgataatcagagactcagtctgttggttatatttgtggtcagcttcatggattctccacagtctgttgtgtcaccatttaagagttcctccgttttcgcggactctgagaagcaaagcaatgaatttttcagcaagaacgcttctggtctatcccggggaatttctgctcatagagaggatgttgaaatctgcaacatggaggacttcattggtgttctcgacgtgtacgtacatcaggctagagatatccacaacatctgcatttaccataaacaagatgtttatgcaaaactttgccttacaagtgatcctgaaagtgcagtctccactcaaaccattaatggcggtgggaaaagtccagtcttcaacgaaaatctaaagctcaatgttcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="77558" stop="80374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77858" g_stop="77895" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77896" i_stop="79513" i_length="1618">
            <donor d_prob="0.287" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79514" g_stop="80074" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="597" r_length="559" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E266568" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77858" e_stop="77895"/>
          <exon e_start="79514" e_stop="80074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTGGTAAAGAATTGGGTTCTTGGACTTTTAGTTGTTTATGTTGTTATTCTTTGACTTTGTTCTGTTTTTTGCTTGTTTAGTTTCTGAGTTGAGACTGTTTTCTGTTCTTGATTTTGAGGTGTGTTTTGTGTTTTTTTTTTTGTCTTGAAGGGGAAAAGGGGTTAAAGATTGTAGCTTTGTTCATGTAGATTTGGTGCAGGATTTAAGTTGAATAGTTAAGGGGAAAGGTAAAGATTGTGGCTTTATGCATTCTCATGGGTGCTGCACAGTTAAAACACTTGTAGGTTTATATACTTTATCTTTGGTGTCTGAGTTTAGTTTTAACACTTTGTGAGGAAGTTAAAGATTGTAGCTTTATTTGCTTTTCTGAGGTGCTGAATGGTTAGTACTTTATGGGGGTTCTGTTTGTAGGTTTATTTATTTTATCTTTGGTGTCTGAGTTAAGTTTAACCCTTTGGTAGGATTGGAAGTTAAAGATTGTTATCTTTATTTGCTTCTCAGAGGTGCTGGATTAGTTAATACTTTATGGGGTTCTGTTTATTTTTAGGATCAGAGCTGTGTGATTTGTTTCTTTAAGGAGGGAACCTGAGTTTTGAAGTGATTCTTTTTGGTGTGTTTTGGGGTTTTGTCTCTCCTTCCTTTTAGCTTTTTTTCAGTTTGGTATGAGTAAAGCTGAATTCTTTTTGAAAATAGGAGAATAGATTGAGTTAACTAGTTGACTAGCTTGGAGCAACGGTAAAGTTGTATCAGTGTGACCTATAAGTGTTTGAGTGGTGGAATAACGAGTGATGATTGTAGCAGGGTAGACTGTCTACATCACACCTCTTAGGATGCTTTGTGCACTTGGCTTCTATTTTTTTTAGGAGGTTATTCTTTTGATTCTTTAGCATAATTTCGGTATATTTCCTGATTTTGACTGTTTCTGCCTTCTATGCTATATTATTCTTCATCTTAAAATCAATTAACATGATGCTCCAATCTCAATCTTTCACTTCAGGGTTATTTTTGTTCTATTCGAGGAAAAAGATTTCATTTTTGTTTCCATTTACTTCTTTCTGTAATGAATTGTACATGTGTGGAATTGTTCTTCTTCTTGACATGATCTTGTTGTTATCTTTGATCCTTTATTTGCCATGTTATCATTTATGAGCTCTGAATAATTGTCACTTGGTCCTAATATGTATCTGAGTTAGGTTAACGAGTTTATTCGTTAAGGTTTCACTTTAAATAAAGCTTCTAGTTCTTGTTTGATGGAGCATGTTACACAATAGGTAAATTCCACATTGAAATGAGAGATACGTACACATTTTGGCTCGATGATTGCATAGCCCAAGGGACAAATCCATAAGGTCTGTAGGGTCAAAGTGGACAATACGTATCATGGGTTTGGGCTGTGACATATAGTGTGGAGAGACCATTCGTTGGGAACTCCAGTATAGTTGTTGTGTGCTCCAAAACAAGTTTGTGTTAAACAAATATATTTCTACTCCTTCAATTACTAGCCGTTCCTCTGTTATAAGCTATTTAATTTGTGGAGATCATTCAGTTTTTGTTCATAGCTATGTGTTCAGTATTAGCCGATGTGATATCTGATATTGATCTTATCCTTCGATTTTCTTAGGTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGT</genome_strand>
        <mrna_strand>TAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E700383" ref_strand="+" ref_description="SGN-E700383 [FA12DH03]">
      <seq>atttaatttgtggagatcattcagtttttgttcatagctatgtgttcagtattagccgatgtgatatctgatattgatcttatccttcgattttcttaggttatatttgtggtcagcttcatggattctccacagtctgttgtgtcaccatttaagagttcctccgttttcgcggactctgagaagcaaagcaatgaatttttcagcaagaacgcttctggtctatcccggggaatttctgctcatagagaggatgttgaaatctgcaacatggaggacttcattggtgttctcgacgtgtacgtacatcaggctagagatatccacaacatctgcatttaccataaacaagatgtttatgcaaaactttgccttacaagtgatcctgaaagtgcagtctccactcaaaccattaatggcggtgggaaaagtccagtcttcaacgaaaatctaaagctcaatgttcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattagaaactgatgcatctcggacagacggcgaagcacgtgagtcccttccaaatgagtttgacaaaattgagttcccagatcctaagattgtaaatgaaaataatctcatggtctccgagtacttcaatatgccaagcagtaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="79115" stop="80576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79415" g_stop="80276" g_length="862"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="860" r_length="860" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E700383" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79415" e_stop="80276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAATTTGTGGAGATCATTCAGTTTTTGTTCATAGCTATGTGTTCAGTATTAGCCGATGTGATATCTGATATTGATCTTATCCTTCGATTTTCTTAGGTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCC</genome_strand>
        <mrna_strand>ATTTAATTTGTGGAGATCATTCAGTTTTTGTTCATAGCTATGTGTTCAGTATTAGCCGATGTGATATCTGATATTGATCTTATCCTTCGATTTTCTTAGGTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAAAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E273247" ref_strand="+" ref_description="SGN-E273247 [cLEM-24-B21]">
      <seq>tatatttgtggtcagcttcatggattctccacagtctgttgtgtcaccatttaagagttcctccgttttcgcggactctgagaagcaaagcaatgaatttttcagcaagaacgcttctggtctatcccggggaatttctgctcatagagaggatgttgaaatctgcaacatggaggacttcattggtgttctcgacgtgtacgtacatcaggctagagatatccacaacatctgcatttaccataaacaagatgtttatgcaaaactttgccttacaagtgatcctgaaagtgcagtctccactcaaaccattaatggcggtgggaaaagtccagtcttcaacgaaaatctaaagctcaatgttcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattagaaactgatgcatctcggacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="79216" stop="80455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79516" g_stop="80155" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E273247" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79516" e_stop="80155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAG</genome_strand>
        <mrna_strand>TATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E553546" ref_strand="+" ref_description="SGN-E553546 [cTSC-1-H16]">
      <seq>gtcagcttcatggattctccacagtctgttgtgtcaccatttaagagttcctccgttttcgcggactctgagaagcaaagcaatgaatttttcagcaagaacgcttctggtctatcccggggaatttctgctcatagagaggatgttgaaatctgcaacatggaggacttcattggtgttctcgacgtgtacgtacatcaggctagagatatccacaacatctgcatttaccataaacaagatgtttatgcaaaactttgccttacaagtgatcctgaaagtgcagtctccactcaaaccattaatggcggtgggaaaagtccagtcttcaacgaaaatctaaagctcaatgttcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattagaaactgatgcatctcggacagacggcgaagcacgtgagtcccttccaaatgagtttgacaaaattgagttcccagatcctaagattgtaaatgagaataatctcatggtctccgagtacttcaatatgccaagcagtaatccagattctcaaagctcggatagcttggtctcttctgatacggaaaaccagctcagtctagaagtcgatgtccatatggaaaatgtttcaagtgaggctactaatttccaccaatatcctaagcgtgattcgccttctagcagcatatcaaccattgactctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="79226" stop="80739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79526" g_stop="80439" g_length="914"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="912" r_length="912" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E553546" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>914</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79526" e_stop="80439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCA</genome_strand>
        <mrna_strand>GTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTTCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTTCTAGCAGCATATCAACCATTGACTCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E310281" ref_strand="+" ref_description="SGN-E310281 [cTOA-1-I2]">
      <seq>ttcctccgttttcgcggactctgagaagcaaagcaatgaatttttcagcaagaacgcttctggtctatcccggggaatttctgctcatagagaggatgttgaaatctgcaacatggaggacttcattggtgttctcgacgtgtacgtacatcaggctagagatatccacaacatctgcatttaccataaacaagatgtttatgcaaaactttgccttacaagtgatcctgaaagtgcagtctccactcaaaccattaatggcggtgggaaaagtccagtcttcaacgaaaatctaaagctcaatgttcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcagggtgaggaattatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="79273" stop="80242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79573" g_stop="79942" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E310281" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79573" e_stop="79942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTG</genome_strand>
        <mrna_strand>TTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E708772" ref_strand="+" ref_description="SGN-E708772 [FA36CH09]">
      <seq>gcatagcaatgaatttttcagcaagaacgcttctggtctatcccggggaatttctgctcatagagaggatgttgaaatctgcaacatggaggacttcattggtgttctcgacgtgtacgtacatcaggctagagatatccacaacatctgcatttaccataaacaagatgtttatgcaaaactttgccttacaagtgatcctgaaagtgcagtctccactcaaaccattaatggcggtgggaaaagtccagtcttcaacgaaaatctaaagctcaatgttcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattagaaactgatgcatctcggacagacggcgaagcacgtgagtcccttccaaatgagtttgacaaaattgagttcccagatcctaagattgtaaatgagaataatctcatggtctccgagtacttcaatatgccaagcagtaatccagattctcaaagctcggatagcttggtctcttctgatacggaaaaccagctcagtctagaagtcgatgtccatatggaaaatgttccaagtgaggctactaatttccaccaatatcctaagcgtgattcgcctcctagcagcatatcaaccattgactctcccacagttttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="79300" stop="80750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79600" g_stop="80450" g_length="851"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="849" r_length="849" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E708772" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79600" e_stop="80450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCA</genome_strand>
        <mrna_strand>GCATAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCCACAGTTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E266348" ref_strand="+" ref_description="SGN-E266348 [cLEI-3-G23]">
      <seq>caaagcaatgaatttttcagcaagaacgcttctggtctatcccggggaatttctgctcatagagaggatgttgaaatctgcaacatggaggacttcattggtgttctcgacgtgtacgtacatcaggctagagatatccacaacatctgcatttaccataaacaagatgtttatgcaaaactttgccttacaagtgatcctgaaagtgcagtctccactcaaaccattaatggcggtgggaaaagtccagtcttcaacgaaaatctaaagctcaatgttcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattagaaactgatgcatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="79301" stop="80449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79601" g_stop="80149" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E266348" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79601" e_stop="80149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTC</genome_strand>
        <mrna_strand>CAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E267784" ref_strand="+" ref_description="SGN-E267784 [cLEI-12-H18]">
      <seq>ggaaaagtccagtcttcaacgaaaatctaaagctcaatgttcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattagaaactgatgcatctcggacagacggcgaagcacgtgagtcccttccaaatgagtttgacaaaattgagttcccagatcctaagattgtaaatgagaataatctcatggtctccgagtacttcaatatgccaagcagtaatccagattctcaaagctcggatagcttggtctcttctgatacggaaaaccagctcagtctagaagtcgatgtccacatggaaaatgttccaagtgaggctactaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="79539" stop="80681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79839" g_stop="80381" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E267784" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79839" e_stop="80381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTT</genome_strand>
        <mrna_strand>GGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCACATGGAAAATGTTCCAAGTGAGGCTACTAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E263543" ref_strand="+" ref_description="SGN-E263543 [cLEG-60-I12]">
      <seq>aaaagtccagtcttcaacgaaaatctaaagctcaatgttcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattagaaactgatgcatctcggacagacggcgaagcacgtgagtcccttccaaatgagtttgacaaaattgagttcccagatcctaagattgtaaatgagaataatctcatggtctccgagtacttcaatatgccaagcagtaatccagattctcaaagctcggatagcttggtctcttctgatacggaaaaccagctcagtctagaagtcgatgtccatatggaaaatgttccaagtgaggctactaatttccaccaatatcctaagcgtgattcgcctcctagcagcatatcaaccattgactctccaacagttttgcatcccgcaagctctcagtcctccgagaccccaggagcttccaagtcgccagaggaagaatatgcatcagcttctaaagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="79541" stop="80830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79841" g_stop="80530" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E263543" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79841" e_stop="80530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAAT</genome_strand>
        <mrna_strand>AAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCCAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E256907" ref_strand="+" ref_description="SGN-E256907 [cLEG-44-E5]">
      <seq>tccagtcttcaacgaaaatctaaagctcaatgttcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcggggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattagaaactgatgcatctcggacagacggcgaagcacgtgagtcccttccaaatgagtttgacaaaattgagttcccagatcctaagattgtaaatgagaataatctcatggtctccgagtacttcaatatgccaagcagtaatccagattctcaaagctcggatagcttggtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="79546" stop="80606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79846" g_stop="80306" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E256907" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79846" e_stop="80306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTC</genome_strand>
        <mrna_strand>TCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCGGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E206194" ref_strand="+" ref_description="SGN-E206194 [cLEC-29-K23]">
      <seq>tcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattagaaactgatgcatctcggacagacggcgaagcacgtgagtcccttccaaatgagtttgacaaaattgagttcccagatcctaagattgtaaatgagaataatctcatggtctccgagtacttcaatatgccaagcagtaatccagattctcaaagctcggatagcttggtctcttctgatacggaaaaccagctcagtctagaagtcgatgtccatatggaaaatgttccaagtgaggctactaatttccaccaatatcctaagcgtgattcgcctcctagcagcatatcaaccattgactctccaacagttttgcatcccgcaagctctcagtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="79579" stop="80769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79879" g_stop="80469" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E206194" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79879" e_stop="80469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCC</genome_strand>
        <mrna_strand>TCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E706910" ref_strand="+" ref_description="SGN-E706910 [FA31CB03]">
      <seq>gagcagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattagaaactgatgcatctcggacagacggcgaagcacgtgagtcccttccaaatgagtttgacaaaattgagttcccagatcctaagattgtaaatgagaataatctcatggtctccgagtacttcaatgccaagcagtaatccagattctcaaagctcggatagcttggtctcttctgatacggaaaaccagctcagtctagaagtcgatgtccatatggaaaatgttccaagtgaggctactaatttccaccaatatcctaagcgtgattcgcctcctagcagcatatcaaccattgactctccaacagttttgcatcccgcaagctctcagtcctccgagacccaaggagcttccaagtcgccagaggaagaatatgcatcagcttctaaagaatgtcccacaggtaaaaataatgttggaaatgctgagagcaacatatcggaaagcaagccacccagtgcatttccaaagccagtggtcattgagccagagcagaaggttgtgcaacaggatattgtggatatgtacatgaaaagtatgcagccatttactgagtcattggcaaagatgaagcttccgctggacatttgaaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="79621" stop="81032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79921" g_stop="80732" g_length="812"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E706910" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79921" e_stop="80732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGG</genome_strand>
        <mrna_strand>GAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTC-A-ATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCCATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTTGAAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E254098" ref_strand="+" ref_description="SGN-E254098 [cLEG-34-N1]">
      <seq>cagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaagcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattagaaactgatgcatctcggacagacggcgaagcacgtgagtcccttccaaatgagtttgacaaaattgagttcccagatcctaagattgtaaatgagaataatctcatggtctccgagtacttcaatatgccaagcagtaatccagattctcaaagctcggatagcttggtctcttctgatacggaaaaccagctcagtctagaagtcgatgtccatatggaaaatgttccaagtgaggctactaatttccaccaatatcctaagcgtgattcgcctcctagcagcatatcaaccattgactctccaacagttttgcatcccgcaagctctcagtcctccgagacccaaggagcttccaagtcgccagaggaagaatatgcatcagcttctaaagaatgtcccacaggtaaaaataatgttggaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="79624" stop="80860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79924" g_stop="80560" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E254098" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79924" e_stop="80560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATG</genome_strand>
        <mrna_strand>CAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAAGCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E261317" ref_strand="+" ref_description="SGN-E261317 [cLEG-68-P10]">
      <seq>cagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattagaaactgatgcatctcggacagacggcgaagcacgtgagtcccttccaaatgagtttgacaaaattgagttcccagatcctaagattgtaaatgagaataatctcatggtctccgagtacttcaatatgccaagcagtaatccagattcctcaagctcggatagcttggtctcttctgatacggaaaaccagctcagtctagaagtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="79624" stop="80641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79924" g_stop="80341" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E261317" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79924" e_stop="80341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCG</genome_strand>
        <mrna_strand>CAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCCTCAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E700122" ref_strand="+" ref_description="SGN-E700122 [FA12AG10]">
      <seq>ggcacgagggagcatggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattagaaactgatgcatctcggacagacggcgaagcacgtgagtcccttccaaatgagtttgacaaaattgagttcccagatcctaagattgtaaatgagaataatctcatggtctccgagtacttcaatatgccaagcagtaatccagattctcaaagctcggatagcttggtctcttctgatacggaaaaccagctcagtctagaagtcgatgtccatatggaaaatgttccaagtgaggctactaatttccaccaatatcctaagcgtgattcgcctcctagcagcatatcaaccattgactctccaacagttttgcatcccgcaagctctcagtcctccgagacccaaggagcttccaagtcgccagaggaagaatatgcatcagcttctaaagaatgtcccacaggtaaaaataatgttggaaatgctgagagcaacatatcggaaagcaagccacccagtgcatttccaaagccagtgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="79621" stop="80914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79927" g_stop="80616" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="703" r_length="688" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E700122" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79927" e_stop="80616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTC</genome_strand>
        <mrna_strand>GGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E253705" ref_strand="+" ref_description="SGN-E253705 [cLEG-32-C5]">
      <seq>ttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattagaaactgatgcatctcggaccagacggcgaagcacgtgagtcccttccaaatgagtttgacaaaattgagttcccagatcctaagattgtaaatgagaataatctcatggtctccgagtaccttcaatatgccaagcagtaatccagattctcaaagctcggatagcttggtctcttctgataccggaaaaccagctcagtctagaagtcgatgtccatatggaaaatgttccaagtgaggctactaatttccaccaatatcctaagcgtgattcgcctcctagcagcatatcaaccattgactctccaacagttttgcatcccgcaagctctcagtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="79655" stop="80770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79955" g_stop="80470" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E253705" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79955" e_stop="80470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGA-CAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTA-CTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATA-CGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCT</genome_strand>
        <mrna_strand>TTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCTC--TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACCAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACCTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACCGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E597590" ref_strand="+" ref_description="SGN-E597590 [67460]">
      <seq>gaattctccctttcgtcgactgatctctttcactccccagcaggatttgtgcacttatccctttcctacaatggaacttcacctgaagttattgaaattcctgcatttcccatatcagaaactgatgcatctcggacagacagcgaagagcttgagtcccttccaaacgagtttgacaaaattgagttcccagatcctaagattgtaaatgagaataatcttatggtctccgagtacttcaatataccaggcactaatcaagactctcaaagctcggatagcttggtctcttctgatacagaaaaccagctcagtcccgaagttgatgtccatatggaaaatgttccaagtgaggttgctaatttcaaccaatatccaaagcgtgattcgcctcctagcagcatatcaaccatcgaatctccaacagctttgcatcctgcaagctctcagtcctccgagacccaaggagcttccaagtctccaggggaagaacatgcatcagcttctaaagaatgtcccacaggtaaaaataattttggaaatgcggaaagcaacatatcggaaagcaagccccccagtgcatttccaaagccagtggtcattgagccagagcaaaaggttgtgcaacaggatattgtggatatgtacatgaaaagtatgcagcaatttactgagtcattggcaaagatgaagcttccactggacattgcaaatggaacaaccagttctgagaattcaagttcagatcagacatcgcaaacacccaagagcactagctcacgggtgttctatggcagcagagctttcttctaagcttttgtgaattgttctcgaaatgacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="79715" stop="81157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80015" g_stop="80857" g_length="843"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="842" r_length="842" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E597590" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E597590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80015" e_stop="80857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCG-AATAACTT</genome_strand>
        <mrna_strand>GAATTCTC-CCTT-TCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTATCCCTTTCCTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCATTTCCCATATCAGAAACTGATGCATCTCGGACAGACAGCGAAGAGCTTGAGTCCCTTCCAAACGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTTATGGTCTCCGAGTACTTCAATATACCAGGCACTAATCAAGACTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACAGAAAACCAGCTCAGTCCCGAAGTTGATGTCCATATGGAAAATGTTCCAAGTGAGGTTGCTAATTTCAACCAATATCCAAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATCGAATCTCCAACAGCTTTGCATCCTGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCTCCAGGGGAAGAACATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATTTTGGAAATGCGGAAAGCAACATATCGGAAAGCAAGCCCCCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAAAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCACTGGACATTGCAAATGGAACAACCAGTTCTGAGAATTCAAGTTCAGATCAGACATCGCAAACACCCAAGAGCACTAGCTCACGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATTGTTCTCGAAATGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E712616" ref_strand="+" ref_description="SGN-E712616 [FB05BD05]">
      <seq>tgaaattcctgcttttcccatattagaaactgatgcatctcggacagacggcgaagcacgtgagtcccttccaaatgagtttgacaaaattgagttcccagatcctaagattgtaaatgagaataatctcatggtctccgagtacttcaatatgccaagcagtaatccagattctcaaagctcggatagcttggtctcttctgatacggaaaaccagctcagtctagaagtcgatgtccatatggaaaatgttccaagtgaggctactaatttccaccaatatcctaagcgtgattcgcctcctagcagcatatcaaccattgactctccaacagttttgcatcccgcaagctctcagtcctccgagacccaaggagcttccaagtcgccagaggaagaatatgcatcagcttctaaagaatgtcccacaggtaaaaataatgttggaaatgctgagagcaacatatcggaaagcaagccacccagtgcatttccaaagccagtggtcattgagccagagcagaaggttgtgcaacaggatattgtggatatgtacatgaaaagtatgcagcaatttactgagtcattggcaaagatgaagcttccgctggacattgaaaatgggacaaccagttctgataattcgagttcagatcagacatcgcagacgcccaagagcactagctcaagggtgttctatggcagcagagctttcttctaagcttttgtgaatggttctcgaataacttatagcgcgattaggagcaagtctaaaaggataagtgaacactaaggattttatgaatgtggtgtttatccattttatcttgtgaatgcttaaaatgctctgaactanttaactttttgtctggtgaagacttgttttacttcagtacccttgtattaattaaaaacttctgttcctaatatatgctcagcaatttcccttggaataaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="79809" stop="81362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80109" g_stop="81061" g_length="953"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="955" r_length="955" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="956" polyA_stop="975"/>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E712616" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>953</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80109" e_stop="81061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGTTGAAGACTTGTTTTACTTCAGTA-CCTTGTAGTTAATTAGAACTTCTGTTCTTAATATATGCTCAGC-ATTTCCCTTGGAATA</genome_strand>
        <mrna_strand>TGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTANTTAACTTTTTGTCTGGTGAAGACTTGTTTTACTTCAGTACCCTTGTATTAATTAAAAACTTCTGTTCCTAATATATGCTCAGCAATTTCCCTTGGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E353721" ref_strand="+" ref_description="SGN-E353721 [cTOS-10-O9]">
      <seq>aaaattgagttcccagatcctaagattgtaaatgagaataatctcatggtctccgagtacttcaatatgccaagcagtaatccagattctcaaagctcggatagcttggtctcttctgatacggaaaaccagctcagtctagaagtcgatgtccatatggaaaatgttccaagtgaggctactaatttccaccaatatcctaagcgtgattcgcctcctagcagcatatcaaccattgactctccaacagttttgcatcccgcaagctctcagtcctccgagacccaaggagcttccaagtcgccagaggaagaatatgcatcagcttctaaagaatgtcccacaggtaaaaataatgttggaaatgctgagagcaacatatcggaaagcaagccacccagtgcatttccaaagccagtggtcattgagccagagcagaaggttgtgcaacaggatattgtggatatgtacatgaaaagtatgcagcaatttactgagtcattggcaaagatgaagcttccgctggacattgaaaatgggacaaccagttctgataattcgagttcagatcagacatcgcagacgcccaagagcactagctcaagggtgttctatggcagcagagctttcttctaagcttttgtgaatggttctcgaataacttatagcgcgattanggagcagtctaaaaggataagtgaacactaaggattttatgaatgtggtggttatccatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="79894" stop="81232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80194" g_stop="80932" g_length="739"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E353721" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80194" e_stop="80932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTA-GGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTT</genome_strand>
        <mrna_strand>AAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTANGGAGC-AGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGGTTATCCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E572151" ref_strand="+" ref_description="SGN-E572151 [31258]">
      <seq>tttcaatatgcagcagtaatccagattctcaaagctcggatagcttggtctcttctgatacagaaaaccagctcagtccagaagttgatgtccatatggaaaatgttccaagtgagattgctaatttccaccaatatccaaagcgtgattcgcctcctagcagatatcaacatcgactctccaacagctttgcatcccgcaagctctcagtcctctgagacccaaggagcttccaagtctccaggggaagaatatgcatcagcttctaaagaatgtcccacaggtaaaaataattttggaaatgctgagagcaacatatcggaaagcaagcctgccagtgcatttccaaagccagtggtcattgagccagagcaaaaggttgtgcaacaggatattgtggatatgtacatgaaaagtatgcagcaatttactgagtcattggcaaagatgaagcttccactggacattgaaaatgggacaaccagttctgagaattcaagttcagatcagacatcgcaaacacccaaaagcactagctcacgggtgttctatggcagcagagctttcttctaagcttttgtgaatggttctcgaatgacctatagcgcgattaggagcaagtctaaaaggataagtgaacactaagggattttatgaatgtagtatttatccattttttcttgtgaatgcttaaaatgctctgaactaatcaacttttgtctgttaacagacttgttttacttcatcagtaccctcttagttaattagaactttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="79954" stop="81329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80253" g_stop="81024" g_length="772"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="773" r_length="773" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E572151" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80253" e_stop="81024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAA-GGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGTTGA-AGACTTGTTTTAC-T--TCAGTA-CCTTGTAGTTAATTAGAACTT</genome_strand>
        <mrna_strand>TTTCAATATG-C-AGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACAGAAAACCAGCTCAGTCCAGAAGTTGATGTCCATATGGAAAATGTTCCAAGTGAGATTGCTAATTTCCACCAATATCCAAAGCGTGATTCGCCTCCTAGCAG-ATATCAA-CATCGACTCTCCAACAGCTTTGCATCCCGCAAGCTCTCAGTCCTCTGAGACCCAAGGAGCTTCCAAGTCTCCAGGGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATTTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCTGCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAAAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCACTGGACATTGAAAATGGGACAACCAGTTCTGAGAATTCAAGTTCAGATCAGACATCGCAAACACCCAAAAGCACTAGCTCACGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATGACCTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGGATTTTATGAATGTAGTATTTATCCATTTTTTCTTGTGAATGCTTAAAATGCTCTGAACTAATCAAC-TTTTGTCTGTTAACAGACTTGTTTTACTTCATCAGTACCCTCTTAGTTAATTAGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E351522" ref_strand="+" ref_description="SGN-E351522 [cTOS-12-O21]">
      <seq>tcggatagcttggtctcttctgatacggaaaaccagctcagtctagaagtcgatgtccatatggaaaatgttccaagtgaggctactaatttccaccaatatcctaagcgtgattcgcctcctagcagcatatcaaccattgactctccaacagttttgcatcccgcaagctctcagtcctccgagacccaaggagcttccaagtcgccagaggaagaatatgcatcagcttctaaagaatgtcccacaggtaaaaataatgttggaaatgctgagagcaacatatcggaaagcaagccacccagtgcatttccaaagccagtggtcattgagccagagcagaaggttgtgcaacaggatattgtggatatgtacatgaaaagtatgcagcaatttactgagtcattggcaaagatgaagcttccgctggacattgaaaatgggacaaccagttctgataattcgagttcagatcagacatcgcagacgcccaagagcactagctcaagggtgttctatggcagcagagctttcttctaagcttttgtgaatggttctcgaataacttatagcgcgattaggagcaagtctaaaaggataagtgaacactaaggattttantgaatgtggtgtttatccattttatcttgtgaatgcttaaaatgctctgaactaattaactttttgtctggtgaagacttgttttacttcagtacctttgtagtaattagaacttctgttcttatatatgctcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="79990" stop="81347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80290" g_stop="81047" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="758" r_length="758" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E351522" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80290" e_stop="81047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTA-TGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGTTGAAGACTTGTTTTACTTCAGTACC-TTGTAGTTAATTAGAACTTCTGTTCTTAATATATGCTCAGCA</genome_strand>
        <mrna_strand>TCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTANTGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGGTGAAGACTTGTTTTACTTCAGTACCTTTGTAG-TAATTAGAACTTCTGTTCTT-ATATATGCTCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E352477" ref_strand="+" ref_description="SGN-E352477 [cTOS-9-I23]">
      <seq>tcggatagcttggtctcttctgatacggaaaaccagctcagtctagaagtcgatgtccatatggaaaatgttccaagtgaggctactaatttccaccaatatcctaagcgtgattcgcctcctagcagcatatcaaccattgactctccaacagttttgcatcccgcaagctctcagtcctccgagacccaaggagcttccaagtcgccagaggaagaatatgcatcagcttctaaagaatgtcccacaggtaaaaataatgttggaaatgctgagagcaacatatcggaaagcaagccacccagtgcatttccaaagccagtggtcattgagccagagcagaaggttgtgcaacaggatattgtggatatgtacatgaaaagtatgcagcaatttactgagtcattggcaaagatgaagcttccgctggacattgaaaatgggacaaccagttctgataattcgagttcagatcagacatcgcagacgcccaagagcactagctcaagggtgttctatggcagcagagctttcttctaagcttttgtgaatggttctcgaataacttatagcgcgattaggagcaagtctaaaaggataagtgaacactaaggattttatgaatgtggtgtttatccattttatcttgtgaatgcttaaaatgctctgaactaattaactttttgtctgttgaagacttgttttactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="79990" stop="81298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80290" g_stop="80998" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E352477" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80290" e_stop="80998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGTTGAAGACTTGTTTTACTT</genome_strand>
        <mrna_strand>TCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGTTGAAGACTTGTTTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E353604" ref_strand="+" ref_description="SGN-E353604 [cTOS-15-N10]">
      <seq>tcggatagcttggtctcttctgatacggaaaaccagctcagtctagaagtcgatgtccatatggaaaatgttccaagtgaggctactaatttccaccaatatcctaagcgtgattcgcctcctagcagcatatcaaccattgactctccaacagttttgcatcccgcaagctctcagtcctccgagacccaaggagcttccaagtcgccagaggaagaatatgcatcagcttctaaagaatgtcccacaggtaaaaataatgttggaaatgctgagagcaacatatcggaaagcaagccacccagtgcatttccaaagccagtggtcattgagccagagcagaaggttgtgcaacaggatattgtggatatgtacatgaaaagtatgcagcaatttactgagtcattggcaaagatgaagcttccgctggacattgaaaatgggacaaccagttctgataattcgagttcagatcagacatcgcagacgcccaagagcactagctcaagggtgntctatggcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="79990" stop="81114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80290" g_stop="80814" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E353604" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80290" e_stop="80814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGC</genome_strand>
        <mrna_strand>TCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGNTCTATGGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E275268" ref_strand="+" ref_description="SGN-E275268 [cLEN-9-O8]">
      <seq>tgatacggaaaaccagctcagtctagaagtcgatgtccatatggaaaatgttccaagtgaggctactaatttccaccaatatcctaagcgtgattcgcctcctagcagcatatcaaccattgactctccaacagttttgcatcccgcaagctctcagtcctccgagacccaaggagcttccaagtcgccagaggaagaatatgcatcagcttctaaagaatgtcccacaggtaaaaataatgttggaaatgctgagagcaacatatcggaaagcaagccacccagtgcatttccaaagccagtggtcattgagccagagcagaaggttgtgcaacaggatattgtggatatgtacatgaaaagtatgcagcaatttactgagtcattggcaaagatgaagcttccgctggacattgaaaatgggacaaccagttctgataattcgagttcagatcagacatcgcagacgcccaagagcactagctcaagggtgttctatggcagcagagctttcttctaagcttttgtgaatggttctcgaataacttatagcgcgattaggagcaagtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="80010" stop="81181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80310" g_stop="80881" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E275268" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80310" e_stop="80881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTA</genome_strand>
        <mrna_strand>TGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E275068" ref_strand="+" ref_description="SGN-E275068 [cLEN-9-G9]">
      <seq>tgatacggaaaaccagctcagtctagaagtcgatgtccatatggaaaatgttccaagtgaggctactaatttccaccaatatcctaagcgtgattcgcctcctagcagcatatcaaccattgactctccaacagttttgcatcccgcaagctctcagtcctccgagacccaaggagcttccaagtcgccagaggaagaatatgcatcagcttctaaagaatgtcccacaggtaaaaataatgttggaaatgctgagagcaacatatcggaaagcaagccacccagtgcatttccaaagccagtggtcattgagccagagcagaaggttgtgcaacaggatattgtggatatgtacatgaaaagtatgcagcaatttactgagtcattggcaaagatgaagcttccgctggacattgaaaatgggacaaccagttctgataattcgagttcagatcagacatcgcagacgcccaagagcactagctcaagggtgttctatggcagcagagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="80010" stop="81122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80310" g_stop="80822" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E275068" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80310" e_stop="80822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTT</genome_strand>
        <mrna_strand>TGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E275056" ref_strand="+" ref_description="SGN-E275056 [cLEN-9-C9]">
      <seq>tgatacggaaaaccagctcagtctagaagtcgatgtccatatggaaaatgttccaagtgaggctactaatttccaccaatatcctaagcgtgattcgcctcctagcagcatatcaaccattgactctccaacagttttgcatcccgcaagctctcagtcctccgagacccaaggagcttccaagtcgccagaggaagaatatgcatcagcttctaaagaatgtcccacaggtaaaaataatgttggaaatgctgagagcaacatatcggaaagcaagccacccagtgcatttccaaagccagtggtcattgagccagagcagaaggttgtgcaacaggatattgtggatatgtacatgaaaagtatgcagcaatttactgagtcattggcaaagatgaagcttccgctggacattgaaaatgggacaaccagttctgataattcgagttcagatcagacatcgcagacgcccaagagcactagctcaagggtgttctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="80010" stop="81108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80310" g_stop="80808" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E275056" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80310" e_stop="80808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTAT</genome_strand>
        <mrna_strand>TGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E715376" ref_strand="+" ref_description="SGN-E715376 [FB14AD09]">
      <seq>caacagttttgcatcccgcaagctctcagtcctccgagacccaaggagcttccaagtcgccagaggaagaatatgcatcagcttctaaagaatgtcccacaggtaaaaataatgttggaaatgctgagagcaacatatcggaaagcaagccacccagtgcatttccaaagccagtggtcattgagccagagcagaaggttgtgcaacaggatattgtggatatgtacatgaaaagtatgcagcaatttactgagtcattggcaaagatgaagcttccgctggacattgaaaatgggacaaccagttctgataattcgagttcagatcagacatcgcagacgcccaagagcactagctcaagggtgttctatggcagcagagctttcttctaagcttttgtgaatggttctcgaataacttatagcgcgattaggagcaagtctaaaaggataagtgaacactaaggattttatgaatgtggtgtttatccattttatcttgtgaatgcttaaaatgctctgaactaattaactttttgtctgttgaagacttgttttacttcagtaccttgtagttaattagaacttctgttcttaatatatgctcagcatttcccttggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="80138" stop="81362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80438" g_stop="81067" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E715376" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80438" e_stop="81067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGTTGAAGACTTGTTTTACTTCAGTACCTTGTAGTTAATTAGAACTTCTGTTCTTAATATATGCTCAGCATTTCCCTTGGAATAATTTTG</genome_strand>
        <mrna_strand>CAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGTTGAAGACTTGTTTTACTTCAGTACCTTGTAGTTAATTAGAACTTCTGTTCTTAATATATGCTCAGCATTTCCCTTGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E732659" ref_strand="+" ref_description="SGN-E732659 [LB02DB06]">
      <seq>cttctccgagacccaaggagcttccaagtcgccagaggaagaatatgcatcagcttctaaagaatgtcccacaggtaaaaataatgttggaaatgctgagagcaacatatcggaaagcaagccacccagtgcatttccaaagccagtggtcattgagccagagcagaaggttgtgcaacaggatattgtggatatgtacatgaaaagtatgcagcaatttactgagtcattggcaaagatgaagcttccgctggacattgaaaatgggacaaccagttctgataattcgagttcagatcagacatcgcagacgcccaagagcactagctcaagggtgttctatggcagcagagctttcttctaagcttttgttaatggttctcgaataacttatagcgcgattaggagcaagtctaaaaggataagtgaacactaaggattttatgaatgtggtgtttatccattttatcttgtgaatgcttaaaatgctctgaactaattaactttttgtctgttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="80167" stop="81286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80466" g_stop="80984" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="520" polyA_stop="534"/>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E732659" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80466" e_stop="80984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGTTGAA</genome_strand>
        <mrna_strand>CTTCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTTAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E234629" ref_strand="-" ref_description="SGN-E234629 [cLEL-6-H19]">
      <seq>ccaaggagcttccaagtcgccagaggaagaatatgcatcagcttctaaagaatgtcccacaggtaaaaataatgttggaaatgctgagagcaacatatcggaaagcaagccacccagtgcatttccaaagccagtggtcattgagccagagcagaaggttgtgcaacaggatattgtggatatgtacatgaaaagtatgcagcaatttactgagtcattggcaaagatgaagcttccgctggacattgaaaatgggacaaccagttctgataattcgagttcagatcagacatcgcagacgcccaagagcactagctcaagggtgttctatggcagcagagctttcttctaagcttttgtgaatggttctcgaataacttatagcgcgattaggagcaagtctaaaaggataagtgaacactaaggattttatgaatgtggtgtttatccattttatcttgtgaatgcttaaaatgctctgaactaattaactttttgtctgttgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="80178" stop="81286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80478" g_stop="80984" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="508" polyA_stop="523"/>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E234629" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234629" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="80478" e_stop="80984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGTTGAA</genome_strand>
        <mrna_strand>CCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E235109" ref_strand="-" ref_description="SGN-E235109 [cLEL-6-H19]">
      <seq>aatgctgagagcaacatatcggaaagcaagccacccagtgcatttccaaagccagtggtcattgagccagagcagaaggttgtgcaacaggatattgtggatatgtacatgaaaagtatgcagcaatttactgagtcattggcaaagatgaagcttccgctggacattgaaaatgggacaaccagttctgataattcgagttcagatcagacatcgcagacgcccaagagcactagctcaagggtgttctatggcagcagagctttcttctaagcttttgtgaatggttctcgaataacttatagcgcgattaggagcaagtctaaaaggataagtgaacactaaggattttatgaatgtggtgtttatccattttatcttgtgaatgcttaaaatgctctgaactaattaactttttgtctgttgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="80257" stop="81286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80557" g_stop="80984" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="429" polyA_stop="444"/>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E235109" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235109" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="80557" e_stop="80984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGTTGAA</genome_strand>
        <mrna_strand>AATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E343660" ref_strand="+" ref_description="SGN-E343660 [cTOF-20-N14]">
      <seq>tgtgatataggttaagattggtgatttgggttttgcaactatagtagggaagagtcattcagcacattcggttcttggaaccccagagttcatggcaccggagttgtatgatgaggattataccgagctgattgatatctactcgtttgggatgtgtgttttggagatggtgacgttggaactaccttatagtgagtgtgataacgtggtgaagatatacaagaaggtaatatccggagtgaggcccaaggccatggacaaggttaaagatctcgaggtcaagaagttcattgagaagtgtcttgctcagcctagggttagaccctctgcttctgaactccttcaagaccctttctttaatgatattaatgatgatgacgaaaacgacgatgaagagtatactagtaacaactattggcatgcttaagtcagccatagctattatttgctagttgctattatattagttagttgtattaggttttgttgtgatatttttggtgttgatttgttacttatagtggtttttgccttttcttccaaaaagaagaaagaaaatggttttgctttttatgaaactattgtaaaagaaaaaacaatagaaaaaagagtgtatttttattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="86972" stop="76149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86672" g_stop="86034" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E343660" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86672" e_stop="86034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGATATAGGTTAAGATTGGTGATTTGGGTTTTGCAACTATAGTAGGGAAGAGTCATTCAGCACATTCGGTTCTTGGAACCCCAGAGTTCATGGCACCGGAGTTGTATGATGAGGATTATACCGAGCTGATTGATATCTACTCGTTTGGGATGTGTGTTTTGGAGATGGTGACGTTGGAACTACCTTATAGTGAGTGTGATAACGTGGTGAAGATATACAAGAAGGTAATATCCGGAGTGAGGCCCAAGGCCATGGACAAGGTTAAAGATCTCGAGGTCAAGAAGTTCATTGAGAAGTGTCTTGCTCAGCCTAGGGTTAGACCCTCTGCTTCTGAACTCCTTCAAGACCCTTTCTTTAATGATATTAATGATGATGACGAAAACGACGATGAAGAGTATACTAGTAACAACTATTGGCATGCTTAAGTCAGCCATAGCTATTATTTGCTAGTTGCTATTATATTAGTTAGTTGTATTAGGTTTTGTTGTGATATTTTTGGTGTTGATTTGTTACTTATAGTGGTTTTTGCCTTTTCTTCCAAAAAGAAGAAAAGAAAATGGTTTTGCTTTTTATGAAACTATTGTAAAAGAAAAAACAATAGAAAAAAGAGTGTATTTTTATTAAGAAATTTGTACAT</genome_strand>
        <mrna_strand>TGTGATATAGGTTAAGATTGGTGATTTGGGTTTTGCAACTATAGTAGGGAAGAGTCATTCAGCACATTCGGTTCTTGGAACCCCAGAGTTCATGGCACCGGAGTTGTATGATGAGGATTATACCGAGCTGATTGATATCTACTCGTTTGGGATGTGTGTTTTGGAGATGGTGACGTTGGAACTACCTTATAGTGAGTGTGATAACGTGGTGAAGATATACAAGAAGGTAATATCCGGAGTGAGGCCCAAGGCCATGGACAAGGTTAAAGATCTCGAGGTCAAGAAGTTCATTGAGAAGTGTCTTGCTCAGCCTAGGGTTAGACCCTCTGCTTCTGAACTCCTTCAAGACCCTTTCTTTAATGATATTAATGATGATGACGAAAACGACGATGAAGAGTATACTAGTAACAACTATTGGCATGCTTAAGTCAGCCATAGCTATTATTTGCTAGTTGCTATTATATTAGTTAGTTGTATTAGGTTTTGTTGTGATATTTTTGGTGTTGATTTGTTACTTATAGTGGTTTTTGCCTTTTCTTCCAAAAAGAAG-AAAGAAAATGGTTTTGCTTTTTATGAAACTATTGTAAAAGAAAAAACAATAGAAAAAAGAGTGTATTTTTATTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E423062" ref_strand="-" ref_description="SGN-E423062 [STM-41-O8]">
      <seq>attaatggcaatattggtcaggttaagattggtgatttgggttttgcaactatagtagggaagagtcattcagcacattcggttcttggaaccccagagttcatggcaccggagttgtatgatgaggattatactgagctgattgatatctactcgtttgggatgtgtgttttggagatggtgacgttggaactaccctatagtgagtgtgataacgtggtgaagatatacaagaaggtaatatccggagtgaggcctaaggccatggacaaggttaaagatcctgagttcaagaagttcattgagaagtgtcttgctcagcctagggttagaccctctgcttctgaactccttcaagaccctttctttaatgatattaatgatgatgacgaaaacgacgatgaagagtatactagtaacaacttttggcatgcttagatcagccatagctattatttgctagtatattagttagttgtattaggttttgttgtggagtttttggtgttgatttgttgcttgtagtgtttttgccttttcttccaaaaagaaaatggttttgctttttattatgaaactattgcaaaagaaaaaacaatagaaaagagtggattttggttaaggaatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="87731" stop="85738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87431" g_stop="87411" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87410" i_stop="86663" i_length="748">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86662" g_stop="86038" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="631" r_length="610" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E423062" ref_strand="-">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.024" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E423062" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="87431" e_stop="87411"/>
          <exon e_start="86662" e_stop="86038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATGGCAATATTGGTCAGGTATATCATTGACCCCTTGCTTTATCTGTTATTATTATCATGTTTTGTCGAGCAAAGGGCCTATCGAAACAGTATATGTATTCGGTGTTGCTTTATCTGTTATTCTATCATGCTTTGTCAAGCAGAGGGTCTATCAGAAACAGTATATGTAGTTGGTGTAGCTATATCTGTTATTCTATCATGTTTTGTCGAGCAGCCTGCAGGATCGCTGGATATTTGTTGTTGTTATGTTATCTATTCTTCTATCATGTTTTATCGAGCAGCCTGCGGGATCACCGGATATGTTGTTGTTTGTTGCGTTATCTGTTATTCTATCATGTTTAGTCGAGCAGCCTGCAGGATCACCGGATATGTTGTTGTCGTTGCCTTATCTGTTATTCTATCATGTTTAGTCGAGCAGCTTTCATGATCAACGGATATATTGTTGTTGTTGCTTCATCTGTCATTAGTATTATCCTTATCTTTATTAACTCTTCAATGTCATAGCTATTTTGTTCAACCGAAAAAAGGATAATGTTGATTATACCTTTGATGAAAGTATTTAATATATCAACAATATTGTTTTGTTCTTATGGTAGTATTCATTTCACCAATTGTTATTTCAACTTGGAAAGAAAAAAAAGATTTGATTTTTATTTGAATCATACTAGCCTGTAGTGTTATCCATGTCTTAGCTTGTTTATGTTGTTTTTACAAACTTCAGAATTTCGAAGGGAGTATGAATGCTTGTGTTGTGTTTGTGATATAGGTTAAGATTGGTGATTTGGGTTTTGCAACTATAGTAGGGAAGAGTCATTCAGCACATTCGGTTCTTGGAACCCCAGAGTTCATGGCACCGGAGTTGTATGATGAGGATTATACCGAGCTGATTGATATCTACTCGTTTGGGATGTGTGTTTTGGAGATGGTGACGTTGGAACTACCTTATAGTGAGTGTGATAACGTGGTGAAGATATACAAGAAGGTAATATCCGGAGTGAGGCCCAAGGCCATGGACAAGGTTAAAGATCTCGAGGTCAAGAAGTTCATTGAGAAGTGTCTTGCTCAGCCTAGGGTTAGACCCTCTGCTTCTGAACTCCTTCAAGACCCTTTCTTTAATGATATTAATGATGATGACGAAAACGACGATGAAGAGTATACTAGTAACAACTATTGGCATGCTTAAGTCAGCCATAGCTATTATTTGCTAGTTGCTATTATATTAGTTAGTTGTATTAGGTTTTGTTGTGATATTTTTGGTGTTGATTTGTTACTTATAGTGGTTTTTGCCTTTTCTTCCAAAAAGAAGAAAAGAAAATGGTTTTGCTTTTTATGAAACTATTGTAAAAGAAAAAACAATAGAAAAAAGAGTGTATTTTTATTAAGAAATTTGT</genome_strand>
        <mrna_strand>ATTAATGGCAATATTGGTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGATTGGTGATTTGGGTTTTGCAACTATAGTAGGGAAGAGTCATTCAGCACATTCGGTTCTTGGAACCCCAGAGTTCATGGCACCGGAGTTGTATGATGAGGATTATACTGAGCTGATTGATATCTACTCGTTTGGGATGTGTGTTTTGGAGATGGTGACGTTGGAACTACCCTATAGTGAGTGTGATAACGTGGTGAAGATATACAAGAAGGTAATATCCGGAGTGAGGCCTAAGGCCATGGACAAGGTTAAAGATCCTGAGTTCAAGAAGTTCATTGAGAAGTGTCTTGCTCAGCCTAGGGTTAGACCCTCTGCTTCTGAACTCCTTCAAGACCCTTTCTTTAATGATATTAATGATGATGACGAAAACGACGATGAAGAGTATACTAGTAACAACTTTTGGCATGCTTAGATCAGCCATAGCTATTATTTGCTA---G----TATATTAGTTAGTTGTATTAGGTTTTGTTGTGGAGTTTTTGGTGTTGATTTGTTGCTTGTAGT-GTTTTTGCCTTTTCTTCCAAAAAG-A-AAATG-GTTTTGCTTT--TTATTATGAAACTATTGCAAAAGAAAAAACAATAG--AAAAGAGTGGATTTTGGTTAAGGAATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E449649" ref_strand="+" ref_description="SGN-E449649 [cSTS-7-I19]">
      <seq>aaagagttcagctttttcgcttctcagttcattgaagtagaagacaaattcacgtagcgttcgcactacatggtgcagagcgtgagcgtggatccggatcgggaatcggagccgttcattgaactggatccgacggggagatatgggcggtacgacgagctattaggttatggagcagtgaagaaggtgtacagagcgtttgatcaggaagaaggaattgaagtagcttggaaccaagtgaaattgcgtaatttcatggatgatcagcaggtgattgaccggctgtattcggaggttcggctattgaaaactctaaagcataagaacataattgcattgtactctgtttggagggatgaaaatcgcaacacgttgaatttcataaccgaggtttgtacctcggggaatttgagagaatataggaagaaacacaaacacgtatcgatgaaggcagtgaagaagtggtctaagcagattcttaagggattgaactatttgcatactcatgaaccttgtgttattcatagggatctcaattgcagtaatgtcttcattaatggcaatattggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="88705" stop="87114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88405" g_stop="88332" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88331" i_stop="88042" i_length="290">
            <donor d_prob="0.988" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88041" g_stop="88036" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="79" r_length="6" r_score="0.500"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88035" i_stop="87906" i_length="130">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87905" g_stop="87414" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="570" r_length="491" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E449649" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88405" e_stop="88332"/>
          <exon e_start="88041" e_stop="88036"/>
          <exon e_start="87905" e_stop="87414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTTCAGCTTTTTTGCTTCTCAGTTCATTGAAGAAGAAGACAAGTTCACGTAACATTCGCACTACATATGGTAAAAATTTGTTTATTCAGTTTAAAATTTCTGTTTTTATCGATGAATCCAATAGTTTAAACAACTGATTTTTTCGTTTTTTTTTTTTCATTTTTATGTTCGAATAGTTTTATTTCAGTTGTTTTTGCTGTAAAAAATGGCGAGTAAATGTAAATGTTCAAATACATGCTTTTAGTTTTTGTTTTCAATTTGAATAGTTTGAAATTTAGTTCTTTTTGCTTTAAAAAGTGTTATAAAAAGTTCATTTTTGGCGGATTTTGAAGAAAAAATGGATGAATAAATCCAAATGTTCAAAAATATGCTTTTAGATTTGTTTTCAATTCGAATAGCTTGGAATTAGTTGTTTTTGCTATAAAAAAGTTGAATTTTGGTGAAAATTTCATCTAATTTGTAGTTTTTTTTTTTAAAAAAAAATTGTTGGTGAAGGTGCAGAGCGTGGATCCGGATCGGGAATCGGAGCCGTTCATTGAACTGGATCCGACGGGTAGATATGGGCGGTACGACGAGCTATTAGGTTATGGAGCAGTGAAGAAGGTGTACAGAGCATTTGATCAGGAAGAAGGGATTGAAGTAGCCTGGAACCAAGTGAAATTGCGTAATTTCATGGATGATCAACAGGTGATTGATAGGCTGTATTCGGAGGTTCGGCTATTGAAAACTCTAAAGCATAAGAATATAATTGCATTGTACTCTGTTTGGAGGGATGAAAATCGCAACACGTTGAATTTCATAACTGAGGTTTGTACCTCGGGGAATTTGAGAGAGTATAGGAAGAAACACAAACACGTATCGATGAAGGCAGTGAAGAAGTGGTCTAAGCAGATCCTTAAGGGATTGAACTATTTGCATACTCATGAACCTTGTGTTATCCACAGGGATCTCAATTGCAGTAATGTCTTCATTAATGGCAATATTGGT</genome_strand>
        <mrna_strand>AAAGAGTTCAGCTTTTTCGCTTCTCAGTTCATTGAAGTAGAAGACAAATTCACGTAGCGTTCGCACTACAT-GG..................................................................................................................................................................................................................................................................................................TGCAGA..................................................................................................................................GCG-TGAGCGTGGATCCGGATCGGGAATCGGAGCCGTTCATTGAACTGGATCCGACGGGGAGATATGGGCGGTACGACGAGCTATTAGGTTATGGAGCAGTGAAGAAGGTGTACAGAGCGTTTGATCAGGAAGAAGGAATTGAAGTAGCTTGGAACCAAGTGAAATTGCGTAATTTCATGGATGATCAGCAGGTGATTGACCGGCTGTATTCGGAGGTTCGGCTATTGAAAACTCTAAAGCATAAGAACATAATTGCATTGTACTCTGTTTGGAGGGATGAAAATCGCAACACGTTGAATTTCATAACCGAGGTTTGTACCTCGGGGAATTTGAGAGAATATAGGAAGAAACACAAACACGTATCGATGAAGGCAGTGAAGAAGTGGTCTAAGCAGATTCTTAAGGGATTGAACTATTTGCATACTCATGAACCTTGTGTTATTCATAGGGATCTCAATTGCAGTAATGTCTTCATTAATGGCAATATTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E423061" ref_strand="+" ref_description="SGN-E423061 [STM-41-O8]">
      <seq>aaagagttcagctttttcgcttctcagttcattgaagtagaagacaaattcacgtagcgttcgcactacatggtgcagagcgtgagcgtggatccggatcgggaatcggagccgttcattgaactggatccgacggggagatatgggcggtacgacgagctattaggttatggagcagtgaagaaggtgtacagagcgtttgatcaggaagaaggaattgaagtagcttggaaccaagtgaaattgcgtaatttcatggatgatcagcaggtgattgaccggctgtattcggaggttcggctattgaaaactctaaagcataagaacataattgcattgtactctgtttggagggatgaaaatcgcaacacgttgaatttcataaccgaggtttgtacctcggggaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="88705" stop="87274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88405" g_stop="88332" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88331" i_stop="88042" i_length="290">
            <donor d_prob="0.988" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88041" g_stop="88036" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="79" r_length="6" r_score="0.500"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88035" i_stop="87906" i_length="130">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87905" g_stop="87574" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="410" r_length="331" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E423061" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E423061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88405" e_stop="88332"/>
          <exon e_start="88041" e_stop="88036"/>
          <exon e_start="87905" e_stop="87574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTTCAGCTTTTTTGCTTCTCAGTTCATTGAAGAAGAAGACAAGTTCACGTAACATTCGCACTACATATGGTAAAAATTTGTTTATTCAGTTTAAAATTTCTGTTTTTATCGATGAATCCAATAGTTTAAACAACTGATTTTTTCGTTTTTTTTTTTTCATTTTTATGTTCGAATAGTTTTATTTCAGTTGTTTTTGCTGTAAAAAATGGCGAGTAAATGTAAATGTTCAAATACATGCTTTTAGTTTTTGTTTTCAATTTGAATAGTTTGAAATTTAGTTCTTTTTGCTTTAAAAAGTGTTATAAAAAGTTCATTTTTGGCGGATTTTGAAGAAAAAATGGATGAATAAATCCAAATGTTCAAAAATATGCTTTTAGATTTGTTTTCAATTCGAATAGCTTGGAATTAGTTGTTTTTGCTATAAAAAAGTTGAATTTTGGTGAAAATTTCATCTAATTTGTAGTTTTTTTTTTTAAAAAAAAATTGTTGGTGAAGGTGCAGAGCGTGGATCCGGATCGGGAATCGGAGCCGTTCATTGAACTGGATCCGACGGGTAGATATGGGCGGTACGACGAGCTATTAGGTTATGGAGCAGTGAAGAAGGTGTACAGAGCATTTGATCAGGAAGAAGGGATTGAAGTAGCCTGGAACCAAGTGAAATTGCGTAATTTCATGGATGATCAACAGGTGATTGATAGGCTGTATTCGGAGGTTCGGCTATTGAAAACTCTAAAGCATAAGAATATAATTGCATTGTACTCTGTTTGGAGGGATGAAAATCGCAACACGTTGAATTTCATAACTGAGGTTTGTACCTCGGGGAATTT</genome_strand>
        <mrna_strand>AAAGAGTTCAGCTTTTTCGCTTCTCAGTTCATTGAAGTAGAAGACAAATTCACGTAGCGTTCGCACTACAT-GG..................................................................................................................................................................................................................................................................................................TGCAGA..................................................................................................................................GCG-TGAGCGTGGATCCGGATCGGGAATCGGAGCCGTTCATTGAACTGGATCCGACGGGGAGATATGGGCGGTACGACGAGCTATTAGGTTATGGAGCAGTGAAGAAGGTGTACAGAGCGTTTGATCAGGAAGAAGGAATTGAAGTAGCTTGGAACCAAGTGAAATTGCGTAATTTCATGGATGATCAGCAGGTGATTGACCGGCTGTATTCGGAGGTTCGGCTATTGAAAACTCTAAAGCATAAGAACATAATTGCATTGTACTCTGTTTGGAGGGATGAAAATCGCAACACGTTGAATTTCATAACCGAGGTTTGTACCTCGGGGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E609759" ref_strand="+" ref_description="SGN-E609759 [46249]">
      <seq>ctgaatcgtcaatggaagactctcactctcagcagcagcagctgcactctacttccgagcaacaactcagagatggaacaacctcctccggcggtttcncgtcacaacgccgccggatcgaacggcggtgctaagtacaagctcatgactcctgctatgcttccgatctctaggtccgcctgtatcaccatacctcccggtctcagtccttcctccttcctcgaatctcctgttctcctttctaacatcaaagctgagccatctccgactacaggttccttctccaaatttcaaacagtgcaaggctctggtggggctgctgcattcttattgacaagaggttatgctagtggcaatacatacattgaaagaaaagcaagctgctttgagtacaaatatgccggtggatctagttctgcatcaggatcattagcaactgaacatgtgatttctacaggtctcaaccaacaacaaaatgagccactgaaagaagttcaagatcaaagtcatcctcaattgttagtaccttcatctctagctaaacacgagatggaaacatcaaaagaactgagtttatctgcacctattaatgttgatgcttcaacaaaagaagagagtctatatgaacctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="91535" stop="95073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91835" g_stop="92085" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92086" i_stop="93286" i_length="1201">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93287" g_stop="93481" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="447" r_length="195" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93482" i_stop="94587" i_length="1106">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.944" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94588" g_stop="94773" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="633" r_length="186" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E609759" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E609759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91835" e_stop="92085"/>
          <exon e_start="93287" e_stop="93481"/>
          <exon e_start="94588" e_stop="94773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAATCGTCAATGGAAGACTCTCACTCTCAGCAGCAGCAGCTGCACTCTACTTCCGAGCAACAACTCAGAGATGGAACAAACTCCTCCGGAGGCTTC-CGTCACAACGCCGCTGGATCGAACGGCGGTGCTAAGTACAAGCTCATGACTCCTGCTATGCTTCCGATCTCTAGGTCCGCCTGTATCACCATACCTCCCGGTCTCAGTCCTTCCTCCTTCCTCGAATCTCCTGTTCTCCTTTCTAACATCAAAGTCAGTTCTCAATCTCTATTTCTCTGTTATTTTTAACCATTAATACTGGACGAAATTTAAGCTTGTTTTGTTAGAATTGTAACACATTAGCTGAAGAAATGAAGTTATTTTGACTACGATGCTTTTTCTAATCGGAGAATTTTAGTAGATCCAGGATGTTGAGGTGATTATCAGCAATAATTAGCTGTTGTTATGTTCTGATTGATAAGAAAACGAAGGATAAGCTATAATGAAAAATAATTAGGGAATCTTAACAATTAATTAGTTTAAGTGTTGTTAAGAGTAAGGTGTATAGTTGTGCTGTCTTCAATTGAGTGAAATGCAAACTATTAGTAAAACTTTTTTCCTTTTTGATTGCGTCATAATATACTAATCAGTGGAGGATTTGAGGATTTTTTTGATGTGATTGTTGCTTTCTTAAAGTACGGTTTGAATTATTGATTAGATATTTGGTTCTTTTCATTGGCATTTGCAATTTGCAACTTGTTAGTTTGATTCTTCTGCATATAACTAAGTGCTCATTTAAGAATATAATATTTATCTGTAAATATAAGTTTGTTTATCTGTGCAAATTGTCACCGTTGGTTCTGATGCTTACATGAACAATGTACTGTATTGGTGCATATATCGTTTTTTAATAGAATTATGCTTGTGGCCTTTACCAGAATACATATTCTTCGTTCTTCTGCGTGGAAAAAGCTTAGTTAGGGATCAGTGTTGTTTTTTCACATAATGAATCTTCCTTTTTCACAAGGTGCTCAGCTTTTCCACTATGTTGTTCCTTGTGGAAAAAGATGTTTATTTTTTAGTGCTCAGTCCGTATAATGGCATCAGTAAATTCCCCTACATTGTTCTTCTGACCTACTTATATGCTTTTTAAAGCTTGCCTAAATTTTTGTCTTATTCGAACGTAAATGCTAATGTTCTGTTGCAGATAAATGATATTTTGCACTACTATAAGTAGCATCTATCTTCCTCCACCCAAATGAAAAGAAATGAACCTGAAGGTGACGTAAAAAAGAAAAAACTTTTCTCCCTCCTCAACGGAGCAGAAAACTGAGAAAGAGTAGTAAATATATGTACCATGTCTGTCAATGGATGAATGTGTTCCCCTTTGGAAAAGAAAATTGTGATCAATAACTTGAAAGTTTATTTCATTTACCTATCAAAACACTTAGTCTATTTCACTTATAACCTGCAGGCTGAGCCATCTCCGACTACAGGTTCCTTCTCCAAATTTCAAACAGTGCAAGGCTCTGGTGGGGCTGCTGCATTCTTATTGACAAGAGGTTATGCTAGTGGCAATACATACACTGAAAGAAAAGCAAGCTGCTTTGAATACAAATATGCCGGTGGATCTAGTTCTACATCAGGATCATTAGCAACTGAACATGTGGTAATGCTCTATTAGAAAATATTATTGATGTTGGATTAGAAACAAAAAGCAAATGAAACAAGAGCTTTTTTATTAGCAGTAGCCCTCTTTAACAACTGACTGATGTTTAATTTAGAAAAAATGAAAGTTTAACTCTGAGGTTCAGGTTCCTGTTCTTGTGTCTTTCTCTTGATATGGCATCTATTTGAGGTTAATGTCAAATGTGTGCAGGTTCTAAATAGTGTTGTAACATGCTATCCGGAAGTAAAGTAGCTTTGGTTTGCTCATCTGTTTTTTTCTTCTTCATATCGAAGAGACTCATGTTTCTTAAGTGGCAGCACTACAGTCCTTTTCACACAAGTAGAGTATCATTAATTTGGTTATGTCGGTAAATTGATATCACCGTGAGCAGTAGTTTGTGTGTGGTCATGCATACTGTCAAGAAATAAATTGTTAAACCAGTGGATGTGACATTTCATCTACTATGCCTTGTTACTGATCCTTCTTACCTCTTCTATGATTTGTCACATTACTATTAAAAAAAATATTCGATGAACAAATTCCAGAAGTTATTACAACTAAAAATCATAGATTTGATTGATGGTGCATTCATCCAATTAACTTTGCTGGGAATGTACAATGACTAACTTAAGTATGTTCTTCTGCAACTGTTAAGTCATGTCAGAATGCTCGTTATAAGTAAGCCTGCAAATTAGTTTGTCAAAGTAATTCTTTCGAAGTTCTTTTTTTTAATTTTTAAATGGTAGTTATTCTTTTGAACTTTTAGAAAATCAACATGTATCACATATCTTGTGGCTATTTTCTCGATATCTTCCTCGTCCTTCTTGTTTTATGTTGCGTGGTGGGTGGATGGAGCTTCCTTTTCTTGCCGAGTTCAGAAGCATCTATATCCCTGTATATCTTAAAGGTTCCACAGAGTATAAATTTGCCTTGCACACCTTTTTTTTGGGCCCTCTTCGGATGAGTTTTCTCTTCTTATAGGTAAATCTTCAAATATAAATATTTAGATATAATTTCTACTAGCTTGTTGAATAATTTGATTGTAGAAAAGAATATTAGTTTACTATAGTCAGTTCCTACATTCCTAATATGCTTCTGTAATCTAGATTTCTACAGGTCTCAACCAACAACACAATGAGCCATTGGAAGAAGTTCAAGATCAATGTTATCCTCAATTGTTAGTACCTTCATCTCTAGCTAAACACGAGATGGAAACATCAAAAGAACTGAGTTTATCTGCACCTATTAATGTTGATGCTTCATCAAAAGAAGAGAGTCTATATGAACCTATT</genome_strand>
        <mrna_strand>CTGAATCGTCAATGGAAGACTCTCACTCTCAGCAGCAGCAGCTGCACTCTACTTCCGAGCAACAACTCAGAGATGGAACAACCTCCTCCGGCGGTTTCNCGTCACAACGCCGCCGGATCGAACGGCGGTGCTAAGTACAAGCTCATGACTCCTGCTATGCTTCCGATCTCTAGGTCCGCCTGTATCACCATACCTCCCGGTCTCAGTCCTTCCTCCTTCCTCGAATCTCCTGTTCTCCTTTCTAACATCAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGCCATCTCCGACTACAGGTTCCTTCTCCAAATTTCAAACAGTGCAAGGCTCTGGTGGGGCTGCTGCATTCTTATTGACAAGAGGTTATGCTAGTGGCAATACATACATTGAAAGAAAAGCAAGCTGCTTTGAGTACAAATATGCCGGTGGATCTAGTTCTGCATCAGGATCATTAGCAACTGAACATGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTACAGGTCTCAACCAACAACAAAATGAGCCACTGAAAGAAGTTCAAGATCAAAGTCATCCTCAATTGTTAGTACCTTCATCTCTAGCTAAACACGAGATGGAAACATCAAAAGAACTGAGTTTATCTGCACCTATTAATGTTGATGCTTCAACAAAAGAAGAGAGTCTATATGAACCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E611701" ref_strand="+" ref_description="SGN-E611701 [61455]">
      <seq>cactctcagcagcagcagctgcactctacttccgagcaacaactcagagatggaacaacctcctccggcggtttccgtcacaacgccgccggatcgaacggcggtgctaagtacaagctcatgactcctgctatgcttccgatctctaggtccgcctgtatcaccatacctcccggtctcagtccttcctccttcctcgaatctcctgttctcctttctaacatcaaagctgagccatctccgactacaggttccttctccaaatttcaaacagtgcaaggctctggtggggctgctgcattcttattgacaagaggttatgctagtggcaatacatacattgaaagaaaagcaagctgctttgagtacaaatatgccggtggatctagttctacatcaggcatcattagacaactgaacatgtgatttctacaggtctcaaccaaaaacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="91558" stop="94916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91858" g_stop="92085" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92086" i_stop="93286" i_length="1201">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93287" g_stop="93481" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="425" r_length="197" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93482" i_stop="94587" i_length="1106">
            <donor d_prob="0.900" d_score="0.92"/>
            <acceptor a_prob="0.944" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94588" g_stop="94616" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="454" r_length="29" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E611701" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E611701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91858" e_stop="92085"/>
          <exon e_start="93287" e_stop="93481"/>
          <exon e_start="94588" e_stop="94616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTCAGCAGCAGCAGCTGCACTCTACTTCCGAGCAACAACTCAGAGATGGAACAAACTCCTCCGGAGGCTTCCGTCACAACGCCGCTGGATCGAACGGCGGTGCTAAGTACAAGCTCATGACTCCTGCTATGCTTCCGATCTCTAGGTCCGCCTGTATCACCATACCTCCCGGTCTCAGTCCTTCCTCCTTCCTCGAATCTCCTGTTCTCCTTTCTAACATCAAAGTCAGTTCTCAATCTCTATTTCTCTGTTATTTTTAACCATTAATACTGGACGAAATTTAAGCTTGTTTTGTTAGAATTGTAACACATTAGCTGAAGAAATGAAGTTATTTTGACTACGATGCTTTTTCTAATCGGAGAATTTTAGTAGATCCAGGATGTTGAGGTGATTATCAGCAATAATTAGCTGTTGTTATGTTCTGATTGATAAGAAAACGAAGGATAAGCTATAATGAAAAATAATTAGGGAATCTTAACAATTAATTAGTTTAAGTGTTGTTAAGAGTAAGGTGTATAGTTGTGCTGTCTTCAATTGAGTGAAATGCAAACTATTAGTAAAACTTTTTTCCTTTTTGATTGCGTCATAATATACTAATCAGTGGAGGATTTGAGGATTTTTTTGATGTGATTGTTGCTTTCTTAAAGTACGGTTTGAATTATTGATTAGATATTTGGTTCTTTTCATTGGCATTTGCAATTTGCAACTTGTTAGTTTGATTCTTCTGCATATAACTAAGTGCTCATTTAAGAATATAATATTTATCTGTAAATATAAGTTTGTTTATCTGTGCAAATTGTCACCGTTGGTTCTGATGCTTACATGAACAATGTACTGTATTGGTGCATATATCGTTTTTTAATAGAATTATGCTTGTGGCCTTTACCAGAATACATATTCTTCGTTCTTCTGCGTGGAAAAAGCTTAGTTAGGGATCAGTGTTGTTTTTTCACATAATGAATCTTCCTTTTTCACAAGGTGCTCAGCTTTTCCACTATGTTGTTCCTTGTGGAAAAAGATGTTTATTTTTTAGTGCTCAGTCCGTATAATGGCATCAGTAAATTCCCCTACATTGTTCTTCTGACCTACTTATATGCTTTTTAAAGCTTGCCTAAATTTTTGTCTTATTCGAACGTAAATGCTAATGTTCTGTTGCAGATAAATGATATTTTGCACTACTATAAGTAGCATCTATCTTCCTCCACCCAAATGAAAAGAAATGAACCTGAAGGTGACGTAAAAAAGAAAAAACTTTTCTCCCTCCTCAACGGAGCAGAAAACTGAGAAAGAGTAGTAAATATATGTACCATGTCTGTCAATGGATGAATGTGTTCCCCTTTGGAAAAGAAAATTGTGATCAATAACTTGAAAGTTTATTTCATTTACCTATCAAAACACTTAGTCTATTTCACTTATAACCTGCAGGCTGAGCCATCTCCGACTACAGGTTCCTTCTCCAAATTTCAAACAGTGCAAGGCTCTGGTGGGGCTGCTGCATTCTTATTGACAAGAGGTTATGCTAGTGGCAATACATACACTGAAAGAAAAGCAAGCTGCTTTGAATACAAATATGCCGGTGGATCTAGTTCTACATCAGG-ATCATTAG-CAACTGAACATGTGGTAATGCTCTATTAGAAAATATTATTGATGTTGGATTAGAAACAAAAAGCAAATGAAACAAGAGCTTTTTTATTAGCAGTAGCCCTCTTTAACAACTGACTGATGTTTAATTTAGAAAAAATGAAAGTTTAACTCTGAGGTTCAGGTTCCTGTTCTTGTGTCTTTCTCTTGATATGGCATCTATTTGAGGTTAATGTCAAATGTGTGCAGGTTCTAAATAGTGTTGTAACATGCTATCCGGAAGTAAAGTAGCTTTGGTTTGCTCATCTGTTTTTTTCTTCTTCATATCGAAGAGACTCATGTTTCTTAAGTGGCAGCACTACAGTCCTTTTCACACAAGTAGAGTATCATTAATTTGGTTATGTCGGTAAATTGATATCACCGTGAGCAGTAGTTTGTGTGTGGTCATGCATACTGTCAAGAAATAAATTGTTAAACCAGTGGATGTGACATTTCATCTACTATGCCTTGTTACTGATCCTTCTTACCTCTTCTATGATTTGTCACATTACTATTAAAAAAAATATTCGATGAACAAATTCCAGAAGTTATTACAACTAAAAATCATAGATTTGATTGATGGTGCATTCATCCAATTAACTTTGCTGGGAATGTACAATGACTAACTTAAGTATGTTCTTCTGCAACTGTTAAGTCATGTCAGAATGCTCGTTATAAGTAAGCCTGCAAATTAGTTTGTCAAAGTAATTCTTTCGAAGTTCTTTTTTTTAATTTTTAAATGGTAGTTATTCTTTTGAACTTTTAGAAAATCAACATGTATCACATATCTTGTGGCTATTTTCTCGATATCTTCCTCGTCCTTCTTGTTTTATGTTGCGTGGTGGGTGGATGGAGCTTCCTTTTCTTGCCGAGTTCAGAAGCATCTATATCCCTGTATATCTTAAAGGTTCCACAGAGTATAAATTTGCCTTGCACACCTTTTTTTTGGGCCCTCTTCGGATGAGTTTTCTCTTCTTATAGGTAAATCTTCAAATATAAATATTTAGATATAATTTCTACTAGCTTGTTGAATAATTTGATTGTAGAAAAGAATATTAGTTTACTATAGTCAGTTCCTACATTCCTAATATGCTTCTGTAATCTAGATTTCTACAGGTCTCAACCAACAACACAA</genome_strand>
        <mrna_strand>CACTCTCAGCAGCAGCAGCTGCACTCTACTTCCGAGCAACAACTCAGAGATGGAACAACCTCCTCCGGCGGTTTCCGTCACAACGCCGCCGGATCGAACGGCGGTGCTAAGTACAAGCTCATGACTCCTGCTATGCTTCCGATCTCTAGGTCCGCCTGTATCACCATACCTCCCGGTCTCAGTCCTTCCTCCTTCCTCGAATCTCCTGTTCTCCTTTCTAACATCAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGCCATCTCCGACTACAGGTTCCTTCTCCAAATTTCAAACAGTGCAAGGCTCTGGTGGGGCTGCTGCATTCTTATTGACAAGAGGTTATGCTAGTGGCAATACATACATTGAAAGAAAAGCAAGCTGCTTTGAGTACAAATATGCCGGTGGATCTAGTTCTACATCAGGCATCATTAGACAACTGAACATGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTACAGGTCTCAACCAAAAACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E346308" ref_strand="+" ref_description="SGN-E346308 [cTOF-23-D22]">
      <seq>caactcagagatggaacaaactcctccggaggcttccgtcacaacgccgctggatcgaacggcggtgctaagtacaagctcatgactcctgctatgcttccgatctctaggtccgcctgtatcaccatacctcccggtctcagtccttcctccttcctcgaatctcctgttctcctttctaacatcaaagctgagccatctccgactacaggttccttctccaaatttcaaacagtgcaaggctctggtggggctgctgcattcttattgacaagaggttatgctagtggcaatacatacactgaaagaaaagcaagctgctttgaatacaaatatgccggtggatctagttctacatcaggatcattagcaactgaacatgtggtaatgctctattagaaaatattattgatgttggattagaaacaaaaagcaaatgaaacaagagcttttttattagcagtagccctctttaacaactgactgatgtttaatttagaaaaaatgaaagtttaactctgaggttcaggttcctgttcttgtgtctttctcttgatatggcatctatttgaggttaatgtcaaatgtgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="91597" stop="93989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91897" g_stop="92085" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92086" i_stop="93286" i_length="1201">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93287" g_stop="93689" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="592" r_length="403" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E346308" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91897" e_stop="92085"/>
          <exon e_start="93287" e_stop="93689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCAGAGATGGAACAAACTCCTCCGGAGGCTTCCGTCACAACGCCGCTGGATCGAACGGCGGTGCTAAGTACAAGCTCATGACTCCTGCTATGCTTCCGATCTCTAGGTCCGCCTGTATCACCATACCTCCCGGTCTCAGTCCTTCCTCCTTCCTCGAATCTCCTGTTCTCCTTTCTAACATCAAAGTCAGTTCTCAATCTCTATTTCTCTGTTATTTTTAACCATTAATACTGGACGAAATTTAAGCTTGTTTTGTTAGAATTGTAACACATTAGCTGAAGAAATGAAGTTATTTTGACTACGATGCTTTTTCTAATCGGAGAATTTTAGTAGATCCAGGATGTTGAGGTGATTATCAGCAATAATTAGCTGTTGTTATGTTCTGATTGATAAGAAAACGAAGGATAAGCTATAATGAAAAATAATTAGGGAATCTTAACAATTAATTAGTTTAAGTGTTGTTAAGAGTAAGGTGTATAGTTGTGCTGTCTTCAATTGAGTGAAATGCAAACTATTAGTAAAACTTTTTTCCTTTTTGATTGCGTCATAATATACTAATCAGTGGAGGATTTGAGGATTTTTTTGATGTGATTGTTGCTTTCTTAAAGTACGGTTTGAATTATTGATTAGATATTTGGTTCTTTTCATTGGCATTTGCAATTTGCAACTTGTTAGTTTGATTCTTCTGCATATAACTAAGTGCTCATTTAAGAATATAATATTTATCTGTAAATATAAGTTTGTTTATCTGTGCAAATTGTCACCGTTGGTTCTGATGCTTACATGAACAATGTACTGTATTGGTGCATATATCGTTTTTTAATAGAATTATGCTTGTGGCCTTTACCAGAATACATATTCTTCGTTCTTCTGCGTGGAAAAAGCTTAGTTAGGGATCAGTGTTGTTTTTTCACATAATGAATCTTCCTTTTTCACAAGGTGCTCAGCTTTTCCACTATGTTGTTCCTTGTGGAAAAAGATGTTTATTTTTTAGTGCTCAGTCCGTATAATGGCATCAGTAAATTCCCCTACATTGTTCTTCTGACCTACTTATATGCTTTTTAAAGCTTGCCTAAATTTTTGTCTTATTCGAACGTAAATGCTAATGTTCTGTTGCAGATAAATGATATTTTGCACTACTATAAGTAGCATCTATCTTCCTCCACCCAAATGAAAAGAAATGAACCTGAAGGTGACGTAAAAAAGAAAAAACTTTTCTCCCTCCTCAACGGAGCAGAAAACTGAGAAAGAGTAGTAAATATATGTACCATGTCTGTCAATGGATGAATGTGTTCCCCTTTGGAAAAGAAAATTGTGATCAATAACTTGAAAGTTTATTTCATTTACCTATCAAAACACTTAGTCTATTTCACTTATAACCTGCAGGCTGAGCCATCTCCGACTACAGGTTCCTTCTCCAAATTTCAAACAGTGCAAGGCTCTGGTGGGGCTGCTGCATTCTTATTGACAAGAGGTTATGCTAGTGGCAATACATACACTGAAAGAAAAGCAAGCTGCTTTGAATACAAATATGCCGGTGGATCTAGTTCTACATCAGGATCATTAGCAACTGAACATGTGGTAATGCTCTATTAGAAAATATTATTGATGTTGGATTAGAAACAAAAAGCAAATGAAACAAGAGCTTTTTTATTAGCAGTAGCCCTCTTTAACAACTGACTGATGTTTAATTTAGAAAAAATGAAAGTTTAACTCTGAGGTTCAGGTTCCTGTTCTTGTGTCTTTCTCTTGATATGGCATCTATTTGAGGTTAATGTCAAATGTGTGC</genome_strand>
        <mrna_strand>CAACTCAGAGATGGAACAAACTCCTCCGGAGGCTTCCGTCACAACGCCGCTGGATCGAACGGCGGTGCTAAGTACAAGCTCATGACTCCTGCTATGCTTCCGATCTCTAGGTCCGCCTGTATCACCATACCTCCCGGTCTCAGTCCTTCCTCCTTCCTCGAATCTCCTGTTCTCCTTTCTAACATCAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGCCATCTCCGACTACAGGTTCCTTCTCCAAATTTCAAACAGTGCAAGGCTCTGGTGGGGCTGCTGCATTCTTATTGACAAGAGGTTATGCTAGTGGCAATACATACACTGAAAGAAAAGCAAGCTGCTTTGAATACAAATATGCCGGTGGATCTAGTTCTACATCAGGATCATTAGCAACTGAACATGTGGTAATGCTCTATTAGAAAATATTATTGATGTTGGATTAGAAACAAAAAGCAAATGAAACAAGAGCTTTTTTATTAGCAGTAGCCCTCTTTAACAACTGACTGATGTTTAATTTAGAAAAAATGAAAGTTTAACTCTGAGGTTCAGGTTCCTGTTCTTGTGTCTTTCTCTTGATATGGCATCTATTTGAGGTTAATGTCAAATGTGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E237940" ref_strand="+" ref_description="SGN-E237940 [cLED-18-G6]">
      <seq>catctgaaagatcatcagatgatgggtataactggcgaaagtatggccagaaacttgttaaaggaagtgaatttccgagaagctattacaaatgtacatatccaaactgcgaagtgaaaaagatatttgagcggtcacctgaaggacaaataacagagattgtttataaaggttctcatgatcatcctaaaccccaactgagccgccgattttctcctggtgctctcatgtctgttcaagaagataaatgtgagaaagaagtgtgtttcagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="94559" stop="95432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94859" g_stop="95132" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E237940" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94859" e_stop="95132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTGAAAGATCATCAGATGATGGGTATAACTGGCGAAAGTATGGCCAGAAACTTGTTAAAGGAAGTGAATTTCCGAGAAGCTATTACAAATGTACATATCCAAACTGCGAAGTGAAAAAGATATTTGAGCGGTCACCTGAAGGACAAATAACAGAGATTGTTTATAAAGGTTCTCATGATCATCCTAAACCCCAACTGAGCCGCCGATTTTCTCCTGGTGCTCTCATGTCTGTTCAAGAAGATAAATGTGAGAAAGAAGTGTGTTTCAGGGG</genome_strand>
        <mrna_strand>CATCTGAAAGATCATCAGATGATGGGTATAACTGGCGAAAGTATGGCCAGAAACTTGTTAAAGGAAGTGAATTTCCGAGAAGCTATTACAAATGTACATATCCAAACTGCGAAGTGAAAAAGATATTTGAGCGGTCACCTGAAGGACAAATAACAGAGATTGTTTATAAAGGTTCTCATGATCATCCTAAACCCCAACTGAGCCGCCGATTTTCTCCTGGTGCTCTCATGTCTGTTCAAGAAGATAAATGTGAGAAAGAAGTGTGTTTCAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E254842" ref_strand="+" ref_description="SGN-E254842 [cLEG-33-J13]">
      <seq>taaaactgagcctagtagtactcccgtatcacctcagcaagcggacactgatggtcttgaaggagcagggtcacagatgcatggcactaatgatgatatggatgaggatgatcaatttgcgaaaagaaggaaaatggatggtgggatggatataacaccagtgattaagcctatccgtgaaccacgcgttgttgttcaaacagtcagtgaagttgatatattggatgatgggtacaagtggcgcaaatatggacagaaggtggtccgaggcaatcctaatcctaggagctattacaagtgcaccaatgctggatgccctgtcaggaaacatgtggagagggcttctcatgatccaaaagctgttatcaccacatatgaaggaaaacataaccacgatgtacccgctgcaaaaaataataaccatgaaatgacaggatcctcgcctgtaaccggcagttcaaggatcagggcaggagagaccaactcacttagtctggatctaggcgttagtactggatatcgtcttgataatgggaacaacgggcaacttcacaccctccatcaccaagttcaagtttcacgttctggtatgatgctagtacagccagctgcagttgcagcgcgctatggtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="94986" stop="96786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95286" g_stop="95414" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95415" i_stop="95483" i_length="69">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95484" g_stop="95639" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="285" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95640" i_stop="96137" i_length="498">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96138" g_stop="96486" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="634" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E254842" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95286" e_stop="95414"/>
          <exon e_start="95484" e_stop="95639"/>
          <exon e_start="96138" e_stop="96486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACTGAGCCTAGTAGTACTCCCGTATCACCTCAGCAAGCGGACACTGATGGTCTTGAAGGAGCAGGGTCACAGATGCATGGCACTAATGATGATATGGATGAGGATGATCAATTTGCGAAAAGAAGGTAAAACTGTTGGAACTCCTTCAGTTCATTCCTGCAATAGATCTAATAGATGGTTAAAATTTTACGCAGGAAAATGGATGGTGGGATGGATATAACACCAGTGATTAAGCCTATCCGTGAACCACGCGTTGTTGTTCAAACAGTCAGTGAAGTTGATATATTGGATGATGGGTACAAGTGGCGCAAATATGGACAGAAGGTGGTCCGAGGCAATCCTAATCCTAGGTATGTAATGTTTATGGTTTGTAGTTATCTGGACATGTGACCTCATGTCACATTATTGGCGTCTACACAGACCTGATTTATCTTGCTATGTAACAAGTATCTGACAAAAGTCATTACTGGTTGTTGGTTGTGTTGGCTATTTATGAAATAGTCATTTAAAATGTTCTGAGTTGTAGCCTAAGAAAGTCTGACACTTGTCATATATGAGCCTTCTCTTGATGAGAGGTAAGAGCCTAAAAGAGACAATGAAGTCTCTAGGATAGCAGATCCTTAATCCATCAATCCCAAGATCTTCTTCGTTGTAAGCCAACAGTCTATAGTTTGGAATTTAAGATGAATTAGAGACCATTTATCATTAAGTTCATCAAACATTCACACTCTTCATGATTCTAATAGATCTCTGGTAAGCTTTTGTATCATGCCAGAAGCTAGGGATTTCGAGCATTTTCTTATCCGAGTGGTCAATCTTTTCTCCTGATTTCATGTCATGTCATGCAGGAGCTATTACAAGTGCACCAATGCTGGATGCCCTGTCAGGAAACATGTGGAGAGGGCTTCTCATGATCCAAAAGCTGTTATCACCACATATGAAGGAAAACATAACCACGATGTACCCGCTGCAAAAAATAATAACCATGAAATGACAGGATCCTCGCCTGTAACCGGCAGTTCAAGGATCAGGGCAGGAGAGACCAACTCACTTAGTCTGGATCTAGGCGTTAGTACTGGATATCGTCTTGATAATGGGAACAACGGGCAACTTCACACCCTCCATCACCAAGTTCAAGTTTCACGTTCTGGTATGATGCTAGTACAGCCAGCTGCAGTTGCAGCGCGCTATGGTATT</genome_strand>
        <mrna_strand>TAAAACTGAGCCTAGTAGTACTCCCGTATCACCTCAGCAAGCGGACACTGATGGTCTTGAAGGAGCAGGGTCACAGATGCATGGCACTAATGATGATATGGATGAGGATGATCAATTTGCGAAAAGAAG.....................................................................GAAAATGGATGGTGGGATGGATATAACACCAGTGATTAAGCCTATCCGTGAACCACGCGTTGTTGTTCAAACAGTCAGTGAAGTTGATATATTGGATGATGGGTACAAGTGGCGCAAATATGGACAGAAGGTGGTCCGAGGCAATCCTAATCCTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTATTACAAGTGCACCAATGCTGGATGCCCTGTCAGGAAACATGTGGAGAGGGCTTCTCATGATCCAAAAGCTGTTATCACCACATATGAAGGAAAACATAACCACGATGTACCCGCTGCAAAAAATAATAACCATGAAATGACAGGATCCTCGCCTGTAACCGGCAGTTCAAGGATCAGGGCAGGAGAGACCAACTCACTTAGTCTGGATCTAGGCGTTAGTACTGGATATCGTCTTGATAATGGGAACAACGGGCAACTTCACACCCTCCATCACCAAGTTCAAGTTTCACGTTCTGGTATGATGCTAGTACAGCCAGCTGCAGTTGCAGCGCGCTATGGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E260171" ref_strand="+" ref_description="SGN-E260171 [cLEG-52-H17]">
      <seq>taaaactgagcctagtagtactcccgtatcacctcagcaagcggacactgatggtcttgaaggagcagggtcacagatgcatggcactaatgatgatatggatgaggatgatcaatttgcgaaaagaaggaaaatggatggtgggatggatataacaccagtgattaagcctatccgtgaaccacgcgttgttgttcaaacagtcagtgaagttgatatattggatgatgggtacaagtggcgcaaatatggacagaaggtggtccgaggcaatcctaatcctaggagctattacaagtgcaccaatgctggatgccctgtcaggaaacatgtggagagggcttctcatgatccaaaagctgttatcaccacatatgaaggaaaacataaccacgatgtacccgctgcaaaaaataataaccatgaaatgacaggatcctcgcctgtaaccggcagttcaaggatcagggcaggagagaccaactcacttagtctggatctaggcgttagtactggatatcgtcttgataatggggacaacgggcaacttcacaccctccatcaccaagttcaagtttcacgttctgggatgatgctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="94986" stop="96752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95286" g_stop="95414" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95415" i_stop="95483" i_length="69">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95484" g_stop="95639" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="285" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95640" i_stop="96137" i_length="498">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96138" g_stop="96452" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="600" r_length="315" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E260171" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95286" e_stop="95414"/>
          <exon e_start="95484" e_stop="95639"/>
          <exon e_start="96138" e_stop="96452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACTGAGCCTAGTAGTACTCCCGTATCACCTCAGCAAGCGGACACTGATGGTCTTGAAGGAGCAGGGTCACAGATGCATGGCACTAATGATGATATGGATGAGGATGATCAATTTGCGAAAAGAAGGTAAAACTGTTGGAACTCCTTCAGTTCATTCCTGCAATAGATCTAATAGATGGTTAAAATTTTACGCAGGAAAATGGATGGTGGGATGGATATAACACCAGTGATTAAGCCTATCCGTGAACCACGCGTTGTTGTTCAAACAGTCAGTGAAGTTGATATATTGGATGATGGGTACAAGTGGCGCAAATATGGACAGAAGGTGGTCCGAGGCAATCCTAATCCTAGGTATGTAATGTTTATGGTTTGTAGTTATCTGGACATGTGACCTCATGTCACATTATTGGCGTCTACACAGACCTGATTTATCTTGCTATGTAACAAGTATCTGACAAAAGTCATTACTGGTTGTTGGTTGTGTTGGCTATTTATGAAATAGTCATTTAAAATGTTCTGAGTTGTAGCCTAAGAAAGTCTGACACTTGTCATATATGAGCCTTCTCTTGATGAGAGGTAAGAGCCTAAAAGAGACAATGAAGTCTCTAGGATAGCAGATCCTTAATCCATCAATCCCAAGATCTTCTTCGTTGTAAGCCAACAGTCTATAGTTTGGAATTTAAGATGAATTAGAGACCATTTATCATTAAGTTCATCAAACATTCACACTCTTCATGATTCTAATAGATCTCTGGTAAGCTTTTGTATCATGCCAGAAGCTAGGGATTTCGAGCATTTTCTTATCCGAGTGGTCAATCTTTTCTCCTGATTTCATGTCATGTCATGCAGGAGCTATTACAAGTGCACCAATGCTGGATGCCCTGTCAGGAAACATGTGGAGAGGGCTTCTCATGATCCAAAAGCTGTTATCACCACATATGAAGGAAAACATAACCACGATGTACCCGCTGCAAAAAATAATAACCATGAAATGACAGGATCCTCGCCTGTAACCGGCAGTTCAAGGATCAGGGCAGGAGAGACCAACTCACTTAGTCTGGATCTAGGCGTTAGTACTGGATATCGTCTTGATAATGGGAACAACGGGCAACTTCACACCCTCCATCACCAAGTTCAAGTTTCACGTTCTGGTATGATGCTAGT</genome_strand>
        <mrna_strand>TAAAACTGAGCCTAGTAGTACTCCCGTATCACCTCAGCAAGCGGACACTGATGGTCTTGAAGGAGCAGGGTCACAGATGCATGGCACTAATGATGATATGGATGAGGATGATCAATTTGCGAAAAGAAG.....................................................................GAAAATGGATGGTGGGATGGATATAACACCAGTGATTAAGCCTATCCGTGAACCACGCGTTGTTGTTCAAACAGTCAGTGAAGTTGATATATTGGATGATGGGTACAAGTGGCGCAAATATGGACAGAAGGTGGTCCGAGGCAATCCTAATCCTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTATTACAAGTGCACCAATGCTGGATGCCCTGTCAGGAAACATGTGGAGAGGGCTTCTCATGATCCAAAAGCTGTTATCACCACATATGAAGGAAAACATAACCACGATGTACCCGCTGCAAAAAATAATAACCATGAAATGACAGGATCCTCGCCTGTAACCGGCAGTTCAAGGATCAGGGCAGGAGAGACCAACTCACTTAGTCTGGATCTAGGCGTTAGTACTGGATATCGTCTTGATAATGGGGACAACGGGCAACTTCACACCCTCCATCACCAAGTTCAAGTTTCACGTTCTGGGATGATGCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E707276" ref_strand="+" ref_description="SGN-E707276 [FA32CC01]">
      <seq>ctgatggtcttgaaggagcagggtcacagatgcatggcactaatgatgatatggatgaggatgatcaatttgcgaaaagaaggaaaatggatggtgggatggatataacaccagtgattaagcctatccgtgaaccacgcgttgttgttcaaacagtcagtgaagttgatatattggatgatgggtacaagtggcgcaaatatggacagaaggtggtccgaggcaatcctaatcctaggagctattacaagtgcaccaatgctggatgccctgtcaggaaacatgtggagagggcttctcatgatccaaaagctgttatcaccacatatgaaggaaaacataaccacgatgtacccgctgcaaaaaataataaccatgaaatgacaggatcctcgcctgtaaccggcagttcaaggatcagggcaggagagaccaactcacttagtctggatctaggcgttagtactggatatcgtcttgataatgggaacaacgggcaacttcacaccctccatcaccaagttcaagtttcacgttctggtatgatgctagtacagccagctgcagttgcagcgcgctatggtattgtacatggtggtatgagccgatttggagctatagataatcgtgttcaaggacctagttttgaaactttgcctttacaaccttctactcagtctctccaaaactatggaaagatacttcttggcccgtgaatcgtatctaccatcaactataagagcttaacaataagaagccaccatctatattttttcctgcatcttggtggattacaaagatatctctagttgaagtataaatacttctaggactcgtcgcgtgatgctgtataatacaccttcacctagtgttctttgtgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="95033" stop="97081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95333" g_stop="95414" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95415" i_stop="95483" i_length="69">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95484" g_stop="95639" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="238" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95640" i_stop="96137" i_length="498">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96138" g_stop="96781" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="882" r_length="644" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E707276" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95333" e_stop="95414"/>
          <exon e_start="95484" e_stop="95639"/>
          <exon e_start="96138" e_stop="96781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGGTCTTGAAGGAGCAGGGTCACAGATGCATGGCACTAATGATGATATGGATGAGGATGATCAATTTGCGAAAAGAAGGTAAAACTGTTGGAACTCCTTCAGTTCATTCCTGCAATAGATCTAATAGATGGTTAAAATTTTACGCAGGAAAATGGATGGTGGGATGGATATAACACCAGTGATTAAGCCTATCCGTGAACCACGCGTTGTTGTTCAAACAGTCAGTGAAGTTGATATATTGGATGATGGGTACAAGTGGCGCAAATATGGACAGAAGGTGGTCCGAGGCAATCCTAATCCTAGGTATGTAATGTTTATGGTTTGTAGTTATCTGGACATGTGACCTCATGTCACATTATTGGCGTCTACACAGACCTGATTTATCTTGCTATGTAACAAGTATCTGACAAAAGTCATTACTGGTTGTTGGTTGTGTTGGCTATTTATGAAATAGTCATTTAAAATGTTCTGAGTTGTAGCCTAAGAAAGTCTGACACTTGTCATATATGAGCCTTCTCTTGATGAGAGGTAAGAGCCTAAAAGAGACAATGAAGTCTCTAGGATAGCAGATCCTTAATCCATCAATCCCAAGATCTTCTTCGTTGTAAGCCAACAGTCTATAGTTTGGAATTTAAGATGAATTAGAGACCATTTATCATTAAGTTCATCAAACATTCACACTCTTCATGATTCTAATAGATCTCTGGTAAGCTTTTGTATCATGCCAGAAGCTAGGGATTTCGAGCATTTTCTTATCCGAGTGGTCAATCTTTTCTCCTGATTTCATGTCATGTCATGCAGGAGCTATTACAAGTGCACCAATGCTGGATGCCCTGTCAGGAAACATGTGGAGAGGGCTTCTCATGATCCAAAAGCTGTTATCACCACATATGAAGGAAAACATAACCACGATGTACCCGCTGCAAAAAATAATAACCATGAAATGACAGGATCCTCGCCTGTAACCGGCAGTTCAAGGATCAGGGCAGGAGAGACCAACTCACTTAGTCTGGATCTAGGCGTTAGTACTGGATATCGTCTTGATAATGGGAACAACGGGCAACTTCACACCCTCCATCACCAAGTTCAAGTTTCACGTTCTGGTATGATGCTAGTACAGCCAGCTGCAGTTGCAGCGCGCTATGGTATTGTACATGGTGGTATGAGCCGATTTGGAGCTATAGATAATCGTGTTCAAGGACCTAGTTTTGAAACTTTGCCTTTACAACCTTCTACTCAGTCTCTCCAAAACTATGGAAAGATACTTCTTGGCCCGTGAATCGTATCTACCATCAACTATAAGAGCTTAACAATAAGAAGCCACCATCTATATTTTTTCCTGCATCTTGGTGGATTACAAAGATATCTCTAGTTGAAGTATAAATACTTCTAGGACTCGTCGCGTGATGCTGTATAATACACCTTCACCTAGTGTTCTTTGTGTA</genome_strand>
        <mrna_strand>CTGATGGTCTTGAAGGAGCAGGGTCACAGATGCATGGCACTAATGATGATATGGATGAGGATGATCAATTTGCGAAAAGAAG.....................................................................GAAAATGGATGGTGGGATGGATATAACACCAGTGATTAAGCCTATCCGTGAACCACGCGTTGTTGTTCAAACAGTCAGTGAAGTTGATATATTGGATGATGGGTACAAGTGGCGCAAATATGGACAGAAGGTGGTCCGAGGCAATCCTAATCCTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTATTACAAGTGCACCAATGCTGGATGCCCTGTCAGGAAACATGTGGAGAGGGCTTCTCATGATCCAAAAGCTGTTATCACCACATATGAAGGAAAACATAACCACGATGTACCCGCTGCAAAAAATAATAACCATGAAATGACAGGATCCTCGCCTGTAACCGGCAGTTCAAGGATCAGGGCAGGAGAGACCAACTCACTTAGTCTGGATCTAGGCGTTAGTACTGGATATCGTCTTGATAATGGGAACAACGGGCAACTTCACACCCTCCATCACCAAGTTCAAGTTTCACGTTCTGGTATGATGCTAGTACAGCCAGCTGCAGTTGCAGCGCGCTATGGTATTGTACATGGTGGTATGAGCCGATTTGGAGCTATAGATAATCGTGTTCAAGGACCTAGTTTTGAAACTTTGCCTTTACAACCTTCTACTCAGTCTCTCCAAAACTATGGAAAGATACTTCTTGGCCCGTGAATCGTATCTACCATCAACTATAAGAGCTTAACAATAAGAAGCCACCATCTATATTTTTTCCTGCATCTTGGTGGATTACAAAGATATCTCTAGTTGAAGTATAAATACTTCTAGGACTCGTCGCGTGATGCTGTATAATACACCTTCACCTAGTGTTCTTTGTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E560554" ref_strand="+" ref_description="SGN-E560554 [20226]">
      <seq>cacaatgctggatgccctgtcaggaaacacgtggagagggcttctcatgatcccaaagctgttatcaccacatatgaaggaaaacataaccacgatgtacctgctgcaaaaaataataaccatgaaatgacgggatcctcacctgtaactggcagttcaaggatcagggcaggagagaccaactcacttagtctggatctaggcgttggtactggatatcgtctggataatgggaacaacgggcaacttcacaccctccatcaccaagttcaagtttcacattctggtatgatgctagtacagccagctgcagttgcagcgcgctatggtattgtacatagtggcatgagccgatttggagctatagataatcgtgttcagggacctagtttcgaaactttgcctttacaaccttctactcagtctctccaaaactatggaaagatacttcttggcccttgaatagtctctaccatcaagtataagcagcgtaacaataagaagccaccatctatatttttcctgcatcttggtggattaccaaagatatctctagttgaagtataaatacttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="95856" stop="97027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96153" g_stop="96727" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E560554" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96153" e_stop="96727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAATGCTGGATGCCCTGTCAGGAAACATGTGGAGAGGGCTTCTCATGATCCAAAAGCTGTTATCACCACATATGAAGGAAAACATAACCACGATGTACCCGCTGCAAAAAATAATAACCATGAAATGACAGGATCCTCGCCTGTAACCGGCAGTTCAAGGATCAGGGCAGGAGAGACCAACTCACTTAGTCTGGATCTAGGCGTTAGTACTGGATATCGTCTTGATAATGGGAACAACGGGCAACTTCACACCCTCCATCACCAAGTTCAAGTTTCACGTTCTGGTATGATGCTAGTACAGCCAGCTGCAGTTGCAGCGCGCTATGGTATTGTACATGGTGGTATGAGCCGATTTGGAGCTATAGATAATCGTGTTCAAGGACCTAGTTTTGAAACTTTGCCTTTACAACCTTCTACTCAGTCTCTCCAAAACTATGGAAAGATACTTCTTGGCCCGTGAATCGTATCTACCATCAACTATAAG-AGCTTAACAATAAGAAGCCACCATCTATATTTTTTCCTGCATCTTGGTGGATTA-CAAAGATATCTCTAGTTGAAGTATAAATACTTCT</genome_strand>
        <mrna_strand>CA-CAATGCTGGATGCCCTGTCAGGAAACACGTGGAGAGGGCTTCTCATGATCCCAAAGCTGTTATCACCACATATGAAGGAAAACATAACCACGATGTACCTGCTGCAAAAAATAATAACCATGAAATGACGGGATCCTCACCTGTAACTGGCAGTTCAAGGATCAGGGCAGGAGAGACCAACTCACTTAGTCTGGATCTAGGCGTTGGTACTGGATATCGTCTGGATAATGGGAACAACGGGCAACTTCACACCCTCCATCACCAAGTTCAAGTTTCACATTCTGGTATGATGCTAGTACAGCCAGCTGCAGTTGCAGCGCGCTATGGTATTGTACATAGTGGCATGAGCCGATTTGGAGCTATAGATAATCGTGTTCAGGGACCTAGTTTCGAAACTTTGCCTTTACAACCTTCTACTCAGTCTCTCCAAAACTATGGAAAGATACTTCTTGGCCCTTGAATAGTCTCTACCATCAAGTATAAGCAGCGTAACAATAAGAAGCCACCATCTATA-TTTTTCCTGCATCTTGGTGGATTACCAAAGATATCTCTAGTTGAAGTATAAATACTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E352981" ref_strand="+" ref_description="SGN-E352981 [cTOS-14-O19]">
      <seq>tttttttttttttttttttgagagataaaaaagacttcgattagtttctgatagaacagatcctagcaagattaaatgacctgtctttttaaattaatacaaacagaaaaaagaagaggtgccactatctgtctcaccattatcaagctacaagttacatgcacctaattacggtaggtaggatctacacagactttacctctacctttgcaggatagagagactgtttccgataagagattatttccatgcacaagaagcaactaaatctcgattcatccagccaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="76148" stop="97601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96944" g_stop="96965" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.682"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96966" i_stop="97035" i_length="70">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97036" g_stop="97301" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="288" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E352981" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96944" e_stop="96965"/>
          <exon e_start="97036" e_stop="97301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTATAATTTTCATTTGATATACATCCTGAATGTGTTGTTTTATATCGCACAAACTGACCAAATGAACTATGAACATGAACAATGTGAGAGATAAAAAAGACTTCGATTAGTTTCTGATAGAACAGATCCTAGCAAGATTAAATGACCTGTCTTTTTAAATTAATACAAACAGAAAAAAGAAGAGGTGCCACTATCTGTCTCACCATTATCAAGCTACAAGTTACATGCACCTAATTACGGTAGGTAGGATCTACACAGACTTTACCTCTACCTTTGCAGGATAGAGAGACTGTTTCCGATAAGAGATTATTTCCATGCACAAGAAGCAACTAAATCTCGATTCATCCAGCCAAG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTGAG......................................................................AGATAAAAAAGACTTCGATTAGTTTCTGATAGAACAGATCCTAGCAAGATTAAATGACCTGTCTTTTTAAATTAATACAAACAGAAAAAAGAAGAGGTGCCACTATCTGTCTCACCATTATCAAGCTACAAGTTACATGCACCTAATTACGGTAGGTAGGATCTACACAGACTTTACCTCTACCTTTGCAGGATAGAGAGACTGTTTCCGATAAGAGATTATTTCCATGCACAAGAAGCAACTAAATCTCGATTCATCCAGCCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E367924" ref_strand="+" ref_description="SGN-E367924 [TUS-22-B15]">
      <seq>tttttttttgagagataaaaaagacttcgattagtttctgatagaacagatcctagcaagattaaatgacctgtctttttaaattaatacaaacagaaaaaagaagaggtgccactatctgtctcaccattatcaagctacaagttacatgcacctaattacggtaggtaggatctacacagactttacctctacctttgcaggatagagagactgtttccgataagagattatttccatgcacaagaagcaactaaatctcgattcatccagccaagatagagcgcgccatttctctcattaagcgtataactttggtagtaattctccagcagggtcttgatagtagcatttactgaggagcttaacggatatggtttaaacccggccacagcaaatcgtgatctccacctttcaagcagctcgtgtcgttccactctctctgccccttcacatgctaatatgttgacaatttcacgggctaagcagtgttgctcaacgttgattcgttccttatggtctctaggtagagccacgtctattgattcgaaaacagataggtagtagttcagtgtctccaagaacctggggaagaattgggctgtgttagtgttggactcttgctccactaaggtaacaatcttgggagataagcttttaaccatcctcagaagtctgtctctgtgattttgagttccaacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="+" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="96730" stop="98026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97024" g_stop="97726" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="+" ref_id="SGN-E367924" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97024" e_stop="97726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAATGTGAGAGATAAAAAAGACTTCGATTAGTTTCTGATAGAACAGATCCTAGCAAGATTAAATGACCTGTCTTTTTAAATTAATACAAACAGAAAAAAGAAGAGGTGCCACTATCTGTCTCACCATTATCAAGCTACAAGTTACATGCACCTAATTACGGTAGGTAGGATCTACACAGACTTTACCTCTACCTTTGCAGGATAGAGAGACTGTTTCCGATAAGAGATTATTTCCATGCACAAGAAGCAACTAAATCTCGATTCATCCAGCCAAGATAGAGCGCGCCATTTCTCTCATTAAGCGTATAACTTTGGTAGTAATTCTCCAGCAGGGTCTTGATAGTAGCATTTACTGAGGAGCTTAACGGATATGGTTTAAACCCGGCCACAGCAAATCGTGATCTCCACCTTTCAAGCAGCTCGTGTCGTTCCACTCTCTCTGCCCCTTCACATGCTAATATGTTGACAATTTCACGGGCTAAGCAGTGTTGCTCAACGTTGATTCGTTCCTTATGGTCTCTAGGTAGAGCCACGTCTATTGATTCGAAAACAGATAGGTAGTAGTTCAGTGTCTCCAAGAACCTGGGGAAGAATTGGGCTGTGTTAGTGTTGGACTCTTGCTCCACTAAGGTAACAATCTTGGGAGATAAGCTTTTAACCATCCTCAGAAGTCTGTCTCTGTGATTTTGAGTTCCAACGC</genome_strand>
        <mrna_strand>TTTTTTTTTGAGAGATAAAAAAGACTTCGATTAGTTTCTGATAGAACAGATCCTAGCAAGATTAAATGACCTGTCTTTTTAAATTAATACAAACAGAAAAAAGAAGAGGTGCCACTATCTGTCTCACCATTATCAAGCTACAAGTTACATGCACCTAATTACGGTAGGTAGGATCTACACAGACTTTACCTCTACCTTTGCAGGATAGAGAGACTGTTTCCGATAAGAGATTATTTCCATGCACAAGAAGCAACTAAATCTCGATTCATCCAGCCAAGATAGAGCGCGCCATTTCTCTCATTAAGCGTATAACTTTGGTAGTAATTCTCCAGCAGGGTCTTGATAGTAGCATTTACTGAGGAGCTTAACGGATATGGTTTAAACCCGGCCACAGCAAATCGTGATCTCCACCTTTCAAGCAGCTCGTGTCGTTCCACTCTCTCTGCCCCTTCACATGCTAATATGTTGACAATTTCACGGGCTAAGCAGTGTTGCTCAACGTTGATTCGTTCCTTATGGTCTCTAGGTAGAGCCACGTCTATTGATTCGAAAACAGATAGGTAGTAGTTCAGTGTCTCCAAGAACCTGGGGAAGAATTGGGCTGTGTTAGTGTTGGACTCTTGCTCCACTAAGGTAACAATCTTGGGAGATAAGCTTTTAACCATCCTCAGAAGTCTGTCTCTGTGATTTTGAGTTCCAACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E239943" ref_strand="+" ref_description="SGN-E239943 [cLED-29-B9]">
      <seq>aagagtccaacactaacacagcccaattctttcccaggttcttggagacactgaactactacctatctgttttcgaatcaatagacgtggctctacctagagaccataaggaacgaatcaacgttgagcaacactgcttagcccgtgaaattgtcaacatattagcatgtgaaggggcagagagagtggaacgacacgagctgcttgaaaggtggagatcacgatttgctgtggccgggtttaaaccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="97945" stop="97096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97645" g_stop="97396" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E239943" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>250</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97645" e_stop="97396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTCCAACACTAACACAGCCCAATTCTTCCCCAGGTTCTTGGAGACACTGAACTACTACCTATCTGTTTTCGAATCAATAGACGTGGCTCTACCTAGAGACCATAAGGAACGAATCAACGTTGAGCAACACTGCTTAGCCCGTGAAATTGTCAACATATTAGCATGTGAAGGGGCAGAGAGAGTGGAACGACACGAGCTGCTTGAAAGGTGGAGATCACGATTTGCTGTGGCCGGGTTTAAACCATA</genome_strand>
        <mrna_strand>AAGAGTCCAACACTAACACAGCCCAATTCTTTCCCAGGTTCTTGGAGACACTGAACTACTACCTATCTGTTTTCGAATCAATAGACGTGGCTCTACCTAGAGACCATAAGGAACGAATCAACGTTGAGCAACACTGCTTAGCCCGTGAAATTGTCAACATATTAGCATGTGAAGGGGCAGAGAGAGTGGAACGACACGAGCTGCTTGAAAGGTGGAGATCACGATTTGCTGTGGCCGGGTTTAAACCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E367925" ref_strand="+" ref_description="SGN-E367925 [TUS-22-B15]">
      <seq>aatagcggagaataatttgatcacagctgaatggttaatgtcagaactacgcacggtggtatctgtttgtgggtctcccatacaacgtttaggtgcttatatgctggaaggtttagttgctagattggcctcctcgggaagctccatctacaaggccttaaggtgcaaagagcctactagtgtcgagctattctcgtacatgcacttgctttatgaaatctgtccatacttcaagtttggatatttgtcagcaaatggtgcaattgttgatgccatgaaagatgagaactcaattcatataatcgatttccagattgctcagggtagccagtggatcaccttaatccatgctcttgcagcacggcctggtggacctccaagaatccgcatcacagggattgatgactctacatcagcttacgccagaggaggagggattgaaatcgtaggtcgaagactgtcaagcattgctgcatcttgcaatgtacctttcgaatttcatcccgtgtctgcttcttgtccagatattgagattgagcatcttaaggttcttcccggngaaccattggctgttaactttgcgctcgtcttgcaccatatgcctgatgagagcgttggaactcaaaatcacagagacagacttctgaggatggttaaaagcttatctcccaagattgttacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="98637" stop="97354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98337" g_stop="97654" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E367925" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98337" e_stop="97654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGCGGAGAATAATTTGATCACAGCTGAATGGTTAATGTCAGAACTACGCACGGTGGTATCTGTTTGTGGGTCTCCCATACAACGTTTAGGTGCTTATATGCTGGAAGGTTTAGTTGCTAGATTGGCCTCCTCGGGAAGCTCCATCTACAAGGCCTTAAGGTGCAAAGAGCCTACTAGTGTCGAGCTATTCTCGTACATGCACTTGCTTTATGAAATCTGTCCATACTTCAAGTTTGGATATTTGTCAGCAAATGGTGCAATTGTTGATGCCATGAAAGATGAGAACTCAATTCATATAATCGATTTCCAGATTGCTCAGGGTAGCCAGTGGATCACCTTAATCCATGCTCTTGCAGCACGGCCTGGTGGACCTCCAAGAATCCGCATCACAGGGATTGATGACTCTACATCAGCTTACGCCAGAGGAGGAGGGATTGAAATCGTAGGTCGAAGACTGTCAAGCATTGCTGCATCTTGCAATGTACCTTTCGAATTTCATCCCGTGTCTGCTTCTTGTCCAGATATTGAGATTGAGCATCTTAAGGTTCTTCCCGGGGAACCATTGGCTGTTAACTTTGCGCTCGTCTTGCACCATATGCCTGATGAGAGCGTTGGAACTCAAAATCACAGAGACAGACTTCTGAGGATGGTTAAAAGCTTATCTCCCAAGATTGTTACCTT</genome_strand>
        <mrna_strand>AATAGCGGAGAATAATTTGATCACAGCTGAATGGTTAATGTCAGAACTACGCACGGTGGTATCTGTTTGTGGGTCTCCCATACAACGTTTAGGTGCTTATATGCTGGAAGGTTTAGTTGCTAGATTGGCCTCCTCGGGAAGCTCCATCTACAAGGCCTTAAGGTGCAAAGAGCCTACTAGTGTCGAGCTATTCTCGTACATGCACTTGCTTTATGAAATCTGTCCATACTTCAAGTTTGGATATTTGTCAGCAAATGGTGCAATTGTTGATGCCATGAAAGATGAGAACTCAATTCATATAATCGATTTCCAGATTGCTCAGGGTAGCCAGTGGATCACCTTAATCCATGCTCTTGCAGCACGGCCTGGTGGACCTCCAAGAATCCGCATCACAGGGATTGATGACTCTACATCAGCTTACGCCAGAGGAGGAGGGATTGAAATCGTAGGTCGAAGACTGTCAAGCATTGCTGCATCTTGCAATGTACCTTTCGAATTTCATCCCGTGTCTGCTTCTTGTCCAGATATTGAGATTGAGCATCTTAAGGTTCTTCCCGGNGAACCATTGGCTGTTAACTTTGCGCTCGTCTTGCACCATATGCCTGATGAGAGCGTTGGAACTCAAAATCACAGAGACAGACTTCTGAGGATGGTTAAAAGCTTATCTCCCAAGATTGTTACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E577535" ref_strand="+" ref_description="SGN-E577535 [60002]">
      <seq>gaaagcatggaatcatacaatactatccctgcggctgcagccaatcaagttgcatcggagtcggataaattggttggaatgatggagatgatgcctagcggagacctgaaagaagttcttattgcttgtgctaaagcaatagcggagaataatttgataacagctgaatggttaatgtcagaactacgcacagtggtatctgtttgtggatctccactacaacgtttaggagcttatatgctggaagctttagttgctagattggcctcctcgggaagctccatctacaaggccttaaggtgcaaagagcctactagtgttgagctattctcgtacatgcacttgctttatgaaatctgcccatacttcaagtttggatatttgtcagcaaatggtgcaattgttgatgccatgaaagatgagaattcgattcatataattgatttccagattgctcagggtagccagtggatcaccttaatccatgctctcgcagcccggcctggtggacctccaagaatccgcatcacagggattgatgactccacgtcagcttacgccagaggaggagggattgaaatcgtaggtcgaagattgtcaagcattgctgcatcttgcaatgtaccttttgaatttcatcccgtgtctgcttcttgtccagatattgagattgagcatcttaaggttcgtcccggggaaccattgggtgttaactttgcgctcgtcttgcaccatatgcctgatgagagcgttggaactcaaaatcacagagacagacttctgaggatggttaaaaagcttatctcccaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="98763" stop="97364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98477" g_stop="97664" g_length="814"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="812" r_length="812" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E577535" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98477" e_stop="97664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGCTTGGAATCATTTAATAATACTATCCCTGTGACTGCAGCCAATCAAGTTCCATCAGAGTCGGATAAATTGGTTGGAATGATGGAGATGATGCCTAGCGGAGACTTGAAAGAAGTTCTAATTGCTTGTGCTAAAGCAATAGCGGAGAATAATTTGATCACAGCTGAATGGTTAATGTCAGAACTACGCACGGTGGTATCTGTTTGTGGGTCTCCCATACAACGTTTAGGTGCTTATATGCTGGAAGGTTTAGTTGCTAGATTGGCCTCCTCGGGAAGCTCCATCTACAAGGCCTTAAGGTGCAAAGAGCCTACTAGTGTCGAGCTATTCTCGTACATGCACTTGCTTTATGAAATCTGTCCATACTTCAAGTTTGGATATTTGTCAGCAAATGGTGCAATTGTTGATGCCATGAAAGATGAGAACTCAATTCATATAATCGATTTCCAGATTGCTCAGGGTAGCCAGTGGATCACCTTAATCCATGCTCTTGCAGCACGGCCTGGTGGACCTCCAAGAATCCGCATCACAGGGATTGATGACTCTACATCAGCTTACGCCAGAGGAGGAGGGATTGAAATCGTAGGTCGAAGACTGTCAAGCATTGCTGCATCTTGCAATGTACCTTTCGAATTTCATCCCGTGTCTGCTTCTTGTCCAGATATTGAGATTGAGCATCTTAAGGTTCTTCCCGGGGAACCATTGGCTGTTAACTTTGCGCTCGTCTTGCACCATATGCCTGATGAGAGCGTTGGAACTCAAAATCACAGAGACAGACTTCTGAGGATGGTT-AAAAGCTTATCTCCCAAGA</genome_strand>
        <mrna_strand>GAAAGCATGGAATCA--T-ACAATACTATCCCTGCGGCTGCAGCCAATCAAGTTGCATCGGAGTCGGATAAATTGGTTGGAATGATGGAGATGATGCCTAGCGGAGACCTGAAAGAAGTTCTTATTGCTTGTGCTAAAGCAATAGCGGAGAATAATTTGATAACAGCTGAATGGTTAATGTCAGAACTACGCACAGTGGTATCTGTTTGTGGATCTCCACTACAACGTTTAGGAGCTTATATGCTGGAAGCTTTAGTTGCTAGATTGGCCTCCTCGGGAAGCTCCATCTACAAGGCCTTAAGGTGCAAAGAGCCTACTAGTGTTGAGCTATTCTCGTACATGCACTTGCTTTATGAAATCTGCCCATACTTCAAGTTTGGATATTTGTCAGCAAATGGTGCAATTGTTGATGCCATGAAAGATGAGAATTCGATTCATATAATTGATTTCCAGATTGCTCAGGGTAGCCAGTGGATCACCTTAATCCATGCTCTCGCAGCCCGGCCTGGTGGACCTCCAAGAATCCGCATCACAGGGATTGATGACTCCACGTCAGCTTACGCCAGAGGAGGAGGGATTGAAATCGTAGGTCGAAGATTGTCAAGCATTGCTGCATCTTGCAATGTACCTTTTGAATTTCATCCCGTGTCTGCTTCTTGTCCAGATATTGAGATTGAGCATCTTAAGGTTCGTCCCGGGGAACCATTGGGTGTTAACTTTGCGCTCGTCTTGCACCATATGCCTGATGAGAGCGTTGGAACTCAAAATCACAGAGACAGACTTCTGAGGATGGTTAAAAAGCTTATCTCCCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E313535" ref_strand="+" ref_description="SGN-E313535 [cTOA-12-I6]">
      <seq>ttaatgtcagaactactcacggtggtatctgtttgtgggtctcccatacaacgtttaggtgcttatatgctggaaggtttagttgctagattggcctactcgggaagctccatctacaaggccttaaggtgcaaagagcctactagtgtcgagctattctcgtacatgcacttgctttatgaaatctgtccatacttcaagtttggatatttgtcatcaaatggtgcaattgttgatgccatgaaagatgagaactcaattcatataatcgatttccagattgctcagggtagccagtggatcaccttaatccatgctcttgcagcacggcctggtggacctccaagaatccgcatcacagggattgatgactctacatcagcttacgccagaggaggagggattgaaatcgtaggtcgaagactgtcaagcattgctgcatcttgcaatgtacctttcgaatttcatcccgtgtctgcttcttgtccagatattgagattgagcatcttaaggttcttcccggggaaccattggctgttaactttgcgctcgtcttgcaccatatgcctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="98603" stop="97431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98303" g_stop="97731" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E313535" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98303" e_stop="97731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATGTCAGAACTACGCACGGTGGTATCTGTTTGTGGGTCTCCCATACAACGTTTAGGTGCTTATATGCTGGAAGGTTTAGTTGCTAGATTGGCCTCCTCGGGAAGCTCCATCTACAAGGCCTTAAGGTGCAAAGAGCCTACTAGTGTCGAGCTATTCTCGTACATGCACTTGCTTTATGAAATCTGTCCATACTTCAAGTTTGGATATTTGTCAGCAAATGGTGCAATTGTTGATGCCATGAAAGATGAGAACTCAATTCATATAATCGATTTCCAGATTGCTCAGGGTAGCCAGTGGATCACCTTAATCCATGCTCTTGCAGCACGGCCTGGTGGACCTCCAAGAATCCGCATCACAGGGATTGATGACTCTACATCAGCTTACGCCAGAGGAGGAGGGATTGAAATCGTAGGTCGAAGACTGTCAAGCATTGCTGCATCTTGCAATGTACCTTTCGAATTTCATCCCGTGTCTGCTTCTTGTCCAGATATTGAGATTGAGCATCTTAAGGTTCTTCCCGGGGAACCATTGGCTGTTAACTTTGCGCTCGTCTTGCACCATATGCCTGAT</genome_strand>
        <mrna_strand>TTAATGTCAGAACTACTCACGGTGGTATCTGTTTGTGGGTCTCCCATACAACGTTTAGGTGCTTATATGCTGGAAGGTTTAGTTGCTAGATTGGCCTACTCGGGAAGCTCCATCTACAAGGCCTTAAGGTGCAAAGAGCCTACTAGTGTCGAGCTATTCTCGTACATGCACTTGCTTTATGAAATCTGTCCATACTTCAAGTTTGGATATTTGTCATCAAATGGTGCAATTGTTGATGCCATGAAAGATGAGAACTCAATTCATATAATCGATTTCCAGATTGCTCAGGGTAGCCAGTGGATCACCTTAATCCATGCTCTTGCAGCACGGCCTGGTGGACCTCCAAGAATCCGCATCACAGGGATTGATGACTCTACATCAGCTTACGCCAGAGGAGGAGGGATTGAAATCGTAGGTCGAAGACTGTCAAGCATTGCTGCATCTTGCAATGTACCTTTCGAATTTCATCCCGTGTCTGCTTCTTGTCCAGATATTGAGATTGAGCATCTTAAGGTTCTTCCCGGGGAACCATTGGCTGTTAACTTTGCGCTCGTCTTGCACCATATGCCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E313537" ref_strand="+" ref_description="SGN-E313537 [cTOA-12-I20]">
      <seq>ttaatgtcttaactactcacggtggtatctgtttgtgggtctcccatacaacgtttaggtgcttatatgctggaaggtttagttgctagattggcctcctcgggaagctccatctacaaggccttaaggtgcaaagagcctactagtgtcgagctattctcgtacatgcacttgctttatgaaatctgtccatacttcaagtttggatatttgtcagcaaatggtgcaattgttgatgccatgaaagatgagaactcaattcatataatcgatttccagattgctcagggtagccagtggatcaccttaatccatgctcttgcagcacggcctggtggacctccaagaatccgcatcacagggattgatgactctacatcagcttacgccagaggaggagggattgaaatcgtaggtcgaagactgtcaagcattgctgcatcttgcaatgtacctttcgaatttcatcccgtgtctgcttcttgtccagatattgagattgagcatcttaaggttcttcccggggaaccattggctgttaactttgcgctcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="98603" stop="97450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98303" g_stop="97750" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E313537" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98303" e_stop="97750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATGTCAGAACTACGCACGGTGGTATCTGTTTGTGGGTCTCCCATACAACGTTTAGGTGCTTATATGCTGGAAGGTTTAGTTGCTAGATTGGCCTCCTCGGGAAGCTCCATCTACAAGGCCTTAAGGTGCAAAGAGCCTACTAGTGTCGAGCTATTCTCGTACATGCACTTGCTTTATGAAATCTGTCCATACTTCAAGTTTGGATATTTGTCAGCAAATGGTGCAATTGTTGATGCCATGAAAGATGAGAACTCAATTCATATAATCGATTTCCAGATTGCTCAGGGTAGCCAGTGGATCACCTTAATCCATGCTCTTGCAGCACGGCCTGGTGGACCTCCAAGAATCCGCATCACAGGGATTGATGACTCTACATCAGCTTACGCCAGAGGAGGAGGGATTGAAATCGTAGGTCGAAGACTGTCAAGCATTGCTGCATCTTGCAATGTACCTTTCGAATTTCATCCCGTGTCTGCTTCTTGTCCAGATATTGAGATTGAGCATCTTAAGGTTCTTCCCGGGGAACCATTGGCTGTTAACTTTGCGCTCGT</genome_strand>
        <mrna_strand>TTAATGTCTTAACTACTCACGGTGGTATCTGTTTGTGGGTCTCCCATACAACGTTTAGGTGCTTATATGCTGGAAGGTTTAGTTGCTAGATTGGCCTCCTCGGGAAGCTCCATCTACAAGGCCTTAAGGTGCAAAGAGCCTACTAGTGTCGAGCTATTCTCGTACATGCACTTGCTTTATGAAATCTGTCCATACTTCAAGTTTGGATATTTGTCAGCAAATGGTGCAATTGTTGATGCCATGAAAGATGAGAACTCAATTCATATAATCGATTTCCAGATTGCTCAGGGTAGCCAGTGGATCACCTTAATCCATGCTCTTGCAGCACGGCCTGGTGGACCTCCAAGAATCCGCATCACAGGGATTGATGACTCTACATCAGCTTACGCCAGAGGAGGAGGGATTGAAATCGTAGGTCGAAGACTGTCAAGCATTGCTGCATCTTGCAATGTACCTTTCGAATTTCATCCCGTGTCTGCTTCTTGTCCAGATATTGAGATTGAGCATCTTAAGGTTCTTCCCGGGGAACCATTGGCTGTTAACTTTGCGCTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E407788" ref_strand="+" ref_description="SGN-E407788 [PPI-8-F11]">
      <seq>tccctgtggctgcagccaatcaagtttcatcggagtcggaaaaattggttggaatgatggagacgatgcctagcggagacttgaaagaagttctaattgcatgtgctaaagcaatagcggagaataatttgataacagctgaatggttaatgtcagaactacgcacagtggtatctgtttgtggatctccgctacaacgtttaggagcttatatgctggaaggtttagttgctagattggcctcctcgggaagctccatctacaaggccttaaggtgcaaagagcctactagtgttgaactattctcgtacatgcacttgctttatgaaatctgtccatacttcaagtttggatatttgtcagcaaatggtgcaattgttgatgccatgaaagatgagaactcgatccatataatcgatttcctgattgctcagggtagccagtggatcaccttaatccatgctctcgcagcccggcctggtggacctccaagaatccgcatcacagggattgatgactctacgtcagcttacgccagaggaggagggattgaaatcgtangtcgaagattgtcaagcattgctgcatcttgcaatgtacctttcgaantcatcccgtgtctgtttcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="98749" stop="97518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98449" g_stop="97818" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E407788" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98449" e_stop="97818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTGTGACTGCAGCCAATCAAGTTCCATCAGAGTCGGATAAATTGGTTGGAATGATGGAGATGATGCCTAGCGGAGACTTGAAAGAAGTTCTAATTGCTTGTGCTAAAGCAATAGCGGAGAATAATTTGATCACAGCTGAATGGTTAATGTCAGAACTACGCACGGTGGTATCTGTTTGTGGGTCTCCCATACAACGTTTAGGTGCTTATATGCTGGAAGGTTTAGTTGCTAGATTGGCCTCCTCGGGAAGCTCCATCTACAAGGCCTTAAGGTGCAAAGAGCCTACTAGTGTCGAGCTATTCTCGTACATGCACTTGCTTTATGAAATCTGTCCATACTTCAAGTTTGGATATTTGTCAGCAAATGGTGCAATTGTTGATGCCATGAAAGATGAGAACTCAATTCATATAATCGATTTCCAGATTGCTCAGGGTAGCCAGTGGATCACCTTAATCCATGCTCTTGCAGCACGGCCTGGTGGACCTCCAAGAATCCGCATCACAGGGATTGATGACTCTACATCAGCTTACGCCAGAGGAGGAGGGATTGAAATCGTAGGTCGAAGACTGTCAAGCATTGCTGCATCTTGCAATGTACCTTTCGAATTTCATCCCGTGTCTGCTTCTTGT</genome_strand>
        <mrna_strand>TCCCTGTGGCTGCAGCCAATCAAGTTTCATCGGAGTCGGAAAAATTGGTTGGAATGATGGAGACGATGCCTAGCGGAGACTTGAAAGAAGTTCTAATTGCATGTGCTAAAGCAATAGCGGAGAATAATTTGATAACAGCTGAATGGTTAATGTCAGAACTACGCACAGTGGTATCTGTTTGTGGATCTCCGCTACAACGTTTAGGAGCTTATATGCTGGAAGGTTTAGTTGCTAGATTGGCCTCCTCGGGAAGCTCCATCTACAAGGCCTTAAGGTGCAAAGAGCCTACTAGTGTTGAACTATTCTCGTACATGCACTTGCTTTATGAAATCTGTCCATACTTCAAGTTTGGATATTTGTCAGCAAATGGTGCAATTGTTGATGCCATGAAAGATGAGAACTCGATCCATATAATCGATTTCCTGATTGCTCAGGGTAGCCAGTGGATCACCTTAATCCATGCTCTCGCAGCCCGGCCTGGTGGACCTCCAAGAATCCGCATCACAGGGATTGATGACTCTACGTCAGCTTACGCCAGAGGAGGAGGGATTGAAATCGTANGTCGAAGATTGTCAAGCATTGCTGCATCTTGCAATGTACCTTTCGAA-NTCATCCCGTGTCTGTTTCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E238467" ref_strand="+" ref_description="SGN-E238467 [cLED-17-C7]">
      <seq>aatagcggagaataatttgatcacagctgaatggttaatgtcagaactacgcacggtggtatctgtttgtgggtctcccatacaacgtttaggtgcttatatgctggaaggtttagttgctagattggcctcctcgggaagctccatctacaaggccttaaggtgcaaagagcctactagtgtcgagctattctcgtacatgcacttgctttatgaaatctgtccatacttcaagtttggatatttgtcagcaaatggtgcaattgttgatgccatgaaagatgagaactcaattcatataatcgatttccagattgctcagggtagccagtggatcaccttaatccatgctcttgcagcacggcctggtggacctccaagaatccgcatcacagggattgatgactctacatcagcttacgccagaggaggagggattgaaatcgtaggtcgaagactgtcaagcattgctgcatcttgcaatgtacctttcgaatttcatcccgtgtctgcttcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="98637" stop="97518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98337" g_stop="97818" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E238467" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98337" e_stop="97818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGCGGAGAATAATTTGATCACAGCTGAATGGTTAATGTCAGAACTACGCACGGTGGTATCTGTTTGTGGGTCTCCCATACAACGTTTAGGTGCTTATATGCTGGAAGGTTTAGTTGCTAGATTGGCCTCCTCGGGAAGCTCCATCTACAAGGCCTTAAGGTGCAAAGAGCCTACTAGTGTCGAGCTATTCTCGTACATGCACTTGCTTTATGAAATCTGTCCATACTTCAAGTTTGGATATTTGTCAGCAAATGGTGCAATTGTTGATGCCATGAAAGATGAGAACTCAATTCATATAATCGATTTCCAGATTGCTCAGGGTAGCCAGTGGATCACCTTAATCCATGCTCTTGCAGCACGGCCTGGTGGACCTCCAAGAATCCGCATCACAGGGATTGATGACTCTACATCAGCTTACGCCAGAGGAGGAGGGATTGAAATCGTAGGTCGAAGACTGTCAAGCATTGCTGCATCTTGCAATGTACCTTTCGAATTTCATCCCGTGTCTGCTTCTTGT</genome_strand>
        <mrna_strand>AATAGCGGAGAATAATTTGATCACAGCTGAATGGTTAATGTCAGAACTACGCACGGTGGTATCTGTTTGTGGGTCTCCCATACAACGTTTAGGTGCTTATATGCTGGAAGGTTTAGTTGCTAGATTGGCCTCCTCGGGAAGCTCCATCTACAAGGCCTTAAGGTGCAAAGAGCCTACTAGTGTCGAGCTATTCTCGTACATGCACTTGCTTTATGAAATCTGTCCATACTTCAAGTTTGGATATTTGTCAGCAAATGGTGCAATTGTTGATGCCATGAAAGATGAGAACTCAATTCATATAATCGATTTCCAGATTGCTCAGGGTAGCCAGTGGATCACCTTAATCCATGCTCTTGCAGCACGGCCTGGTGGACCTCCAAGAATCCGCATCACAGGGATTGATGACTCTACATCAGCTTACGCCAGAGGAGGAGGGATTGAAATCGTAGGTCGAAGACTGTCAAGCATTGCTGCATCTTGCAATGTACCTTTCGAATTTCATCCCGTGTCTGCTTCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E319109" ref_strand="+" ref_description="SGN-E319109 [cTOB-16-C5]">
      <seq>aagagcctactagtgtcgagctattctcgtacatgcacttgctttatgaaatctgtccatacttcaagtttggatatttgtcagcaaatggtgcaattgttgatgccatgaaagatgagaactcaattcatataatcgatttccacattgctcacggtagccagtggatcaccttaatccatgctcttgcatcacggcctggtggacctccaataatccgcatcacagggattgatgactctacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="98470" stop="97624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98170" g_stop="97924" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E319109" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>247</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98170" e_stop="97924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCCTACTAGTGTCGAGCTATTCTCGTACATGCACTTGCTTTATGAAATCTGTCCATACTTCAAGTTTGGATATTTGTCAGCAAATGGTGCAATTGTTGATGCCATGAAAGATGAGAACTCAATTCATATAATCGATTTCCAGATTGCTCAGGGTAGCCAGTGGATCACCTTAATCCATGCTCTTGCAGCACGGCCTGGTGGACCTCCAAGAATCCGCATCACAGGGATTGATGACTCTACATC</genome_strand>
        <mrna_strand>AAGAGCCTACTAGTGTCGAGCTATTCTCGTACATGCACTTGCTTTATGAAATCTGTCCATACTTCAAGTTTGGATATTTGTCAGCAAATGGTGCAATTGTTGATGCCATGAAAGATGAGAACTCAATTCATATAATCGATTTCCACATTGCTCACGGTAGCCAGTGGATCACCTTAATCCATGCTCTTGCATCACGGCCTGGTGGACCTCCAATAATCCGCATCACAGGGATTGATGACTCTACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E588592" ref_strand="+" ref_description="SGN-E588592 [42148]">
      <seq>gttctgattcatgtcgttcagacatgcaccattctcctgatgatacatttcaatcatcgggtaacagttcgtgctacactagtgatgttactgacctgaagcacaagttaagggaacttgaaactgcaatgctggggccagattcagaaagcatggaatcatacaatactatccctgcggcctgcagccaatcaagtttcatcggagtcggataaattggttggaatgatggagatgatgcctagcggagacctgaaagaagttcttattgcttgtgctaaagcaatagcggagaataatttgataacagctgaatggttaatgtcagaactacgcacagtggtatctgtttgtggatctccactacaacgtttaggagcttatatgctggaagctttagttgctagattggcctcctcgggaagctccatctacaaggccttaaggtgcaaagagcctactagtgttgagctattctcgtacatgcacttgcgtttatgaaatctgcccatacttcaagtttggatatttgtcagcaaatggtgcacattgttgatgccatgaaagatgagaattcgattcatataattgatttccagattgctcagggtagccagtggatcaccttaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="98923" stop="97691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98623" g_stop="97991" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E588592" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E588592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98623" e_stop="97991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTGATTCGTGTCGTTCAGACATGCATCATTCTCCTGATGATACATTTCAGTCGTCGGGTAACAGTTCGTGCTACACTAGTGATGTTACTGACCTGAAGCACAAGTTAAGGGAACTTGAAACTGCAATGCTGGGGCCAGATTCAGAAAGCTTGGAATCATTTAATAATACTATCCCTG-TGACTGCAGCCAATCAAGTTCCATCAGAGTCGGATAAATTGGTTGGAATGATGGAGATGATGCCTAGCGGAGACTTGAAAGAAGTTCTAATTGCTTGTGCTAAAGCAATAGCGGAGAATAATTTGATCACAGCTGAATGGTTAATGTCAGAACTACGCACGGTGGTATCTGTTTGTGGGTCTCCCATACAACGTTTAGGTGCTTATATGCTGGAAGGTTTAGTTGCTAGATTGGCCTCCTCGGGAAGCTCCATCTACAAGGCCTTAAGGTGCAAAGAGCCTACTAGTGTCGAGCTATTCTCGTACATGCACTTGC-TTTATGAAATCTGTCCATACTTCAAGTTTGGATATTTGTCAGCAAATGGTGCA-ATTGTTGATGCCATGAAAGATGAGAACTCAATTCATATAATCGATTTCCAGATTGCTCAGGGTAGCCAGTGGATCACCTTAATCC</genome_strand>
        <mrna_strand>GTTCTGATTCATGTCGTTCAGACATGCACCATTCTCCTGATGATACATTTCAATCATCGGGTAACAGTTCGTGCTACACTAGTGATGTTACTGACCTGAAGCACAAGTTAAGGGAACTTGAAACTGCAATGCTGGGGCCAGATTCAGAAAGCATGGAATCA--T-ACAATACTATCCCTGCGGCCTGCAGCCAATCAAGTTTCATCGGAGTCGGATAAATTGGTTGGAATGATGGAGATGATGCCTAGCGGAGACCTGAAAGAAGTTCTTATTGCTTGTGCTAAAGCAATAGCGGAGAATAATTTGATAACAGCTGAATGGTTAATGTCAGAACTACGCACAGTGGTATCTGTTTGTGGATCTCCACTACAACGTTTAGGAGCTTATATGCTGGAAGCTTTAGTTGCTAGATTGGCCTCCTCGGGAAGCTCCATCTACAAGGCCTTAAGGTGCAAAGAGCCTACTAGTGTTGAGCTATTCTCGTACATGCACTTGCGTTTATGAAATCTGCCCATACTTCAAGTTTGGATATTTGTCAGCAAATGGTGCACATTGTTGATGCCATGAAAGATGAGAATTCGATTCATATAATTGATTTCCAGATTGCTCAGGGTAGCCAGTGGATCACCTTAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E554466" ref_strand="+" ref_description="SGN-E554466 [cTSC-4-G16]">
      <seq>ttctctgagtatcaggatagttggatctttgaaatgtgttatggatgtgaatgttaaagcttggagctggtgaactttttgtaacgaggcggggtgtatgctggaaatgtttctgttgtcttctggatatctatgatgtgctaaacggttagataatatttcacgatgaggccttctcagaaccctgaggaaatcaacgagttcaacaaattctataaccaacccatagagtatcaagaatcctatttcctgccttccgttaacaatccgaacaacaaccaatcgttctatgctgatgtctctgccttaaaacccgcccaacactgttatgttgaatcatccgcgggaaattctagtgaacttgtttctgattcacctcctattgttaatttcaaccccatgatgaaccaaggttctgattcgtgtcgttcagacatgcatcattctcctgatgatacatttcagtcgtcgggtaacagttcgtgctacactagtgatgttactgacctgaagcacaagttaagggaacttgaaactgcaatgctggggccagattcagaaagcttggaatcatttaataatactatccctgtgactgcagccaatcaagttccatcagagtcggataaattggttggaatgatggagatgatgcctagcggagacttgaaagaagttctaattgcttgtgctaaagcaatagcggagaataattttgatcacagctgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="100578" stop="98006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100278" g_stop="100264" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100263" i_stop="99021" i_length="1243">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99020" g_stop="98306" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="731" r_length="716" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E554466" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100278" e_stop="100264"/>
          <exon e_start="99020" e_stop="98306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTGAGTATCAGGTATGCTTTCTTTCACTGTTTTTTTTTTTTGATAATCTGAAGATATGGGAAGTTATAATTGTTGTAAAAAGTTGAATCTTTTTGTGTTAACTTGATAGAAATTGAATTCTTTTGTATGAACTTGGAACCCCTTTTCATTCTTGAAAAAAAATTTGGATCTTTTTGTATAAACTTGAAAAAAAAAATTGAATCTTTTTGTATTAACTTGAAACCTATTTCATTCTTGGAAAAAAAATGGATCTTTTTGTTTTTCTTGTTTTAGTTTTTTGTTGTTGGGGTGGGGGTTCTTTATGTTTAGCTAATTCTGGTGTTAGGATGCAAGTGGTAAGCTTCAGTTCTTTATGTTTAGCTAAATTCTGGTGTTAAGATGCAAGTGGTAAGCTTCATTTCTTTGTAATTTTTAGAAAGCATTTGAGACATTTTAATTTTTTGGGTTTTGTGGATGGGAATAGTTTGTTTGCCAGTAAATCTGAGAGAAATTCAGTGAATTCTTTTTTGTTATGATGAAAATTAGGGGTTTCATTCTCTATATAGAAGATCTATAAGGCTAAGGCAGTGGGCAGTGGGTAGTGGGGACCTAACCCTTCAGCCTAGACCTTTTTAAAGTGCTTTGGTAAAAGATTGCAACTATGGTTAAAGTGCTTTTTTTTTATATGATGAAGGGTATGGGTTGAGGTTAAATGAGCTGACCCAACTTGTTTGGGTCTGAGAGTTCAGTTTTTTTCTTTTCACCCTTCCCTAGGAGCTCCGACCTTTTGGTTCCTTGGTGAGTCGAATCCGCAACCTTAAGATTGGAGGTGGAGGGTGCTTACCATCTAGGCCACCCCTCTTGTCGAGAGATAGTTGTTTGATTAAAGTGCTTTTATTTGATATGATGAAGGGTATGAATTGAGCTTAAATGAAGCTATGAGGATTCAATTAGCCGACCTTAACTTGTTTGGGACTGAGAGGTAGTTTTTTTTTTTCACCCCATGTCTAGGAGCTCCCGCCTTTTGCTCCGTTGGTGACGCAATGCTCTAACCTTAAGGTTGGAGTTGGAGGGTGTTTCCCATCTGAGCAATCCCCACTTGTCGAGAGGTAGTTACTAACTTATTATATTGGTTACAGTGCTGTTAGGACTATGAACAAAAGCGTTTGTCCAACACTTGCACTAAATTAAGTTCAAGCTGTTCTTTATAAATTGGTGTTCTTTTGATTTCTCATTAGTAACAATTGCTATGGTATTTGTTTAACTTCTCCACAGGATAGTTGGATCTTTGAAATGTGTTATGGATGTGAATGTTAAAGCTTGGAGCTGGTGAACTTTTTGTAACGAGGCGGGGTGTATGCTGGAAATGTTTCTGTTGTCTTCTGGATATCTATGATGTGCTAAACGGTTAGATAATATTTCACGATGAGGCCTTCTCAGAACCCTGAGGAAATCAACGAGTTCAACAAATTCTATAACCAACCCATAGAGTATCAAGAATCCTATTTCCTGCCTTCCGTTAACAATCCGAACAACAACCAATCGTTCTATGCTGATGTCTCTGCCTTAAAACCCGCCCAACACTGTTATGTTGAATCATCCGCGGGAAATTCTAGTGAACTTGTTTCTGATTCACCTCCTATTGTTAATTTCAACCCCATGATGAACCAAGGTTCTGATTCGTGTCGTTCAGACATGCATCATTCTCCTGATGATACATTTCAGTCGTCGGGTAACAGTTCGTGCTACACTAGTGATGTTACTGACCTGAAGCACAAGTTAAGGGAACTTGAAACTGCAATGCTGGGGCCAGATTCAGAAAGCTTGGAATCATTTAATAATACTATCCCTGTGACTGCAGCCAATCAAGTTCCATCAGAGTCGGATAAATTGGTTGGAATGATGGAGATGATGCCTAGCGGAGACTTGAAAGAAGTTCTAATTGCTTGTGCTAAAGCAATAGCGGAGAATAA-TTTGATCACAGCTGAAT</genome_strand>
        <mrna_strand>TTCTCTGAGTATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTTGGATCTTTGAAATGTGTTATGGATGTGAATGTTAAAGCTTGGAGCTGGTGAACTTTTTGTAACGAGGCGGGGTGTATGCTGGAAATGTTTCTGTTGTCTTCTGGATATCTATGATGTGCTAAACGGTTAGATAATATTTCACGATGAGGCCTTCTCAGAACCCTGAGGAAATCAACGAGTTCAACAAATTCTATAACCAACCCATAGAGTATCAAGAATCCTATTTCCTGCCTTCCGTTAACAATCCGAACAACAACCAATCGTTCTATGCTGATGTCTCTGCCTTAAAACCCGCCCAACACTGTTATGTTGAATCATCCGCGGGAAATTCTAGTGAACTTGTTTCTGATTCACCTCCTATTGTTAATTTCAACCCCATGATGAACCAAGGTTCTGATTCGTGTCGTTCAGACATGCATCATTCTCCTGATGATACATTTCAGTCGTCGGGTAACAGTTCGTGCTACACTAGTGATGTTACTGACCTGAAGCACAAGTTAAGGGAACTTGAAACTGCAATGCTGGGGCCAGATTCAGAAAGCTTGGAATCATTTAATAATACTATCCCTGTGACTGCAGCCAATCAAGTTCCATCAGAGTCGGATAAATTGGTTGGAATGATGGAGATGATGCCTAGCGGAGACTTGAAAGAAGTTCTAATTGCTTGTGCTAAAGCAATAGCGGAGAATAATTTTGATCACAGCTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E334555" ref_strand="+" ref_description="SGN-E334555 [cTOD-23-N22]">
      <seq>tgaaaatgaagtttgattttttttttctctgactttctttttagtattttcttcaccactagtggcttactaaaaatggaatatgcgttgtctaaagttaagctttttttctctgattatttcattaaccatgttcttcaatctttttgcttaagatttcttctctgagtatcaggatagttggatctttgaaatgtgttatggatgtgaatgttaaagcttggagctggtgaactttttgtaacgaggcggggtgtatgctggaaatgtttctgttgtcttctggatatctatgatgtgctaaacggttagataatatttcacgatgaggccttctcagaaccctgaggaaatcaacgagttcaacaaattctataaccaacccatagagtatcaagaatcctatttcctgccttccgttaacaatccgaacaacaaccaatcgttctatgctgatgtctctgccttaaaacccgcccaacactgttatgttgaatcatccgcgggaaattctagtgaacttgtttctgattcacctcctattgttaatttcaaccccatgatgaaccaaggttctgattcgtgtcgttcagacatgcatcattctcctgatgatacatttcagtcgtcgggtaacagttcgtgctacactagtgatgttactgacctgaagcacaagttaagggaacttgaaactgcaatgctggggccagattcagaaagcttggaatcatttaataatactatccctgtgactgcagccaatcaagttccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="100738" stop="98119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100438" g_stop="100264" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100263" i_stop="99021" i_length="1243">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99020" g_stop="98419" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="777" r_length="602" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E334555" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100438" e_stop="100264"/>
          <exon e_start="99020" e_stop="98419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAATGAAGTTTGATTTTTTTTTTCTCTGACTTTCTTTTTAGTATTTTCTTCACCACTAGTGGCTTACTAAAAATGGAATATGCGTTGTCTAAAGTTAAGCTTTTTTTCTCTGATTATTTCATTAACCATGTTCTTCAATCTTTTTGCTTAAGATTTCTTCTCTGAGTATCAGGTATGCTTTCTTTCACTGTTTTTTTTTTTTGATAATCTGAAGATATGGGAAGTTATAATTGTTGTAAAAAGTTGAATCTTTTTGTGTTAACTTGATAGAAATTGAATTCTTTTGTATGAACTTGGAACCCCTTTTCATTCTTGAAAAAAAATTTGGATCTTTTTGTATAAACTTGAAAAAAAAAATTGAATCTTTTTGTATTAACTTGAAACCTATTTCATTCTTGGAAAAAAAATGGATCTTTTTGTTTTTCTTGTTTTAGTTTTTTGTTGTTGGGGTGGGGGTTCTTTATGTTTAGCTAATTCTGGTGTTAGGATGCAAGTGGTAAGCTTCAGTTCTTTATGTTTAGCTAAATTCTGGTGTTAAGATGCAAGTGGTAAGCTTCATTTCTTTGTAATTTTTAGAAAGCATTTGAGACATTTTAATTTTTTGGGTTTTGTGGATGGGAATAGTTTGTTTGCCAGTAAATCTGAGAGAAATTCAGTGAATTCTTTTTTGTTATGATGAAAATTAGGGGTTTCATTCTCTATATAGAAGATCTATAAGGCTAAGGCAGTGGGCAGTGGGTAGTGGGGACCTAACCCTTCAGCCTAGACCTTTTTAAAGTGCTTTGGTAAAAGATTGCAACTATGGTTAAAGTGCTTTTTTTTTATATGATGAAGGGTATGGGTTGAGGTTAAATGAGCTGACCCAACTTGTTTGGGTCTGAGAGTTCAGTTTTTTTCTTTTCACCCTTCCCTAGGAGCTCCGACCTTTTGGTTCCTTGGTGAGTCGAATCCGCAACCTTAAGATTGGAGGTGGAGGGTGCTTACCATCTAGGCCACCCCTCTTGTCGAGAGATAGTTGTTTGATTAAAGTGCTTTTATTTGATATGATGAAGGGTATGAATTGAGCTTAAATGAAGCTATGAGGATTCAATTAGCCGACCTTAACTTGTTTGGGACTGAGAGGTAGTTTTTTTTTTTCACCCCATGTCTAGGAGCTCCCGCCTTTTGCTCCGTTGGTGACGCAATGCTCTAACCTTAAGGTTGGAGTTGGAGGGTGTTTCCCATCTGAGCAATCCCCACTTGTCGAGAGGTAGTTACTAACTTATTATATTGGTTACAGTGCTGTTAGGACTATGAACAAAAGCGTTTGTCCAACACTTGCACTAAATTAAGTTCAAGCTGTTCTTTATAAATTGGTGTTCTTTTGATTTCTCATTAGTAACAATTGCTATGGTATTTGTTTAACTTCTCCACAGGATAGTTGGATCTTTGAAATGTGTTATGGATGTGAATGTTAAAGCTTGGAGCTGGTGAACTTTTTGTAACGAGGCGGGGTGTATGCTGGAAATGTTTCTGTTGTCTTCTGGATATCTATGATGTGCTAAACGGTTAGATAATATTTCACGATGAGGCCTTCTCAGAACCCTGAGGAAATCAACGAGTTCAACAAATTCTATAACCAACCCATAGAGTATCAAGAATCCTATTTCCTGCCTTCCGTTAACAATCCGAACAACAACCAATCGTTCTATGCTGATGTCTCTGCCTTAAAACCCGCCCAACACTGTTATGTTGAATCATCCGCGGGAAATTCTAGTGAACTTGTTTCTGATTCACCTCCTATTGTTAATTTCAACCCCATGATGAACCAAGGTTCTGATTCGTGTCGTTCAGACATGCATCATTCTCCTGATGATACATTTCAGTCGTCGGGTAACAGTTCGTGCTACACTAGTGATGTTACTGACCTGAAGCACAAGTTAAGGGAACTTGAAACTGCAATGCTGGGGCCAGATTCAGAAAGCTTGGAATCATTTAATAATACTATCCCTGTGACTGCAGCCAATCAAGTTCCATC</genome_strand>
        <mrna_strand>TGAAAATGAAGTTTGATTTTTTTTTTCTCTGACTTTCTTTTTAGTATTTTCTTCACCACTAGTGGCTTACTAAAAATGGAATATGCGTTGTCTAAAGTTAAGCTTTTTTTCTCTGATTATTTCATTAACCATGTTCTTCAATCTTTTTGCTTAAGATTTCTTCTCTGAGTATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTTGGATCTTTGAAATGTGTTATGGATGTGAATGTTAAAGCTTGGAGCTGGTGAACTTTTTGTAACGAGGCGGGGTGTATGCTGGAAATGTTTCTGTTGTCTTCTGGATATCTATGATGTGCTAAACGGTTAGATAATATTTCACGATGAGGCCTTCTCAGAACCCTGAGGAAATCAACGAGTTCAACAAATTCTATAACCAACCCATAGAGTATCAAGAATCCTATTTCCTGCCTTCCGTTAACAATCCGAACAACAACCAATCGTTCTATGCTGATGTCTCTGCCTTAAAACCCGCCCAACACTGTTATGTTGAATCATCCGCGGGAAATTCTAGTGAACTTGTTTCTGATTCACCTCCTATTGTTAATTTCAACCCCATGATGAACCAAGGTTCTGATTCGTGTCGTTCAGACATGCATCATTCTCCTGATGATACATTTCAGTCGTCGGGTAACAGTTCGTGCTACACTAGTGATGTTACTGACCTGAAGCACAAGTTAAGGGAACTTGAAACTGCAATGCTGGGGCCAGATTCAGAAAGCTTGGAATCATTTAATAATACTATCCCTGTGACTGCAGCCAATCAAGTTCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E478847" ref_strand="+" ref_description="SGN-E478847 [cSTD-7-G18]">
      <seq>attttattacaatgttgaaaatcaagattgattatttttttctgactttcattttagtattttcttcaccactagtggcttcctaaaaatggaatatgccttgtctaaaagttagcttttttctctgattacttcattaaccatgttcttcaatttttgcttaacatttcttctctgagtatcaggatagttggatgattgaaatgtgttatggatgtgaatgttaaagcttggagctggtgaactttttgttacgatgccgggtgtatgctggaaaatctatgatgtgctaaaccggtagataatatttcacaatgaggccttctcaaaaccctgaggatatcaacgagttcaacagattctataaccaacccatagagtatcaagaatcctatttcctgccttctattaacaatccaaacaacaaccaatcgtactatgctgatgtctctgccttaaaacccgaccaacactgctatgttgaatcatccacgggaaattctagtgaacttgtttccgattcacctcctattgttaatttcaaccccatgatgcagcaaggttctgattcatggcgttcagacatgcatcattctcctgatgatacatttcaatcatcgggtaacagttcgtgctacactagtgatgttactgacctgaagcacaagttaagggaacttgaaactgcaatgctggggccagattcagaaagcatggaatcatataatactatccctgtggctgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="100753" stop="98135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100453" g_stop="100264" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100263" i_stop="99021" i_length="1243">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.934" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99020" g_stop="98435" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="747" r_length="562" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E478847" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.039" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100453" e_stop="100264"/>
          <exon e_start="99020" e_stop="98435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTATTACAATGTTGAAAATGAAGTTTGATTTTTTTTTTCTCTGACTTTCTTTTTAGTATTTTCTTCACCACTAGTGGCTTACTAAAAATGGAATATGCGTTGTCTAAAGTTAAGCTTTTTTTCTCTGATTATTTCATTAACCATGTTCTTCAATCTTTTTGCTTAAGATTTCTTCTCTGAGTATCAGGTATGCTTTCTTTCACTGTTTTTTTTTTTTGATAATCTGAAGATATGGGAAGTTATAATTGTTGTAAAAAGTTGAATCTTTTTGTGTTAACTTGATAGAAATTGAATTCTTTTGTATGAACTTGGAACCCCTTTTCATTCTTGAAAAAAAATTTGGATCTTTTTGTATAAACTTGAAAAAAAAAATTGAATCTTTTTGTATTAACTTGAAACCTATTTCATTCTTGGAAAAAAAATGGATCTTTTTGTTTTTCTTGTTTTAGTTTTTTGTTGTTGGGGTGGGGGTTCTTTATGTTTAGCTAATTCTGGTGTTAGGATGCAAGTGGTAAGCTTCAGTTCTTTATGTTTAGCTAAATTCTGGTGTTAAGATGCAAGTGGTAAGCTTCATTTCTTTGTAATTTTTAGAAAGCATTTGAGACATTTTAATTTTTTGGGTTTTGTGGATGGGAATAGTTTGTTTGCCAGTAAATCTGAGAGAAATTCAGTGAATTCTTTTTTGTTATGATGAAAATTAGGGGTTTCATTCTCTATATAGAAGATCTATAAGGCTAAGGCAGTGGGCAGTGGGTAGTGGGGACCTAACCCTTCAGCCTAGACCTTTTTAAAGTGCTTTGGTAAAAGATTGCAACTATGGTTAAAGTGCTTTTTTTTTATATGATGAAGGGTATGGGTTGAGGTTAAATGAGCTGACCCAACTTGTTTGGGTCTGAGAGTTCAGTTTTTTTCTTTTCACCCTTCCCTAGGAGCTCCGACCTTTTGGTTCCTTGGTGAGTCGAATCCGCAACCTTAAGATTGGAGGTGGAGGGTGCTTACCATCTAGGCCACCCCTCTTGTCGAGAGATAGTTGTTTGATTAAAGTGCTTTTATTTGATATGATGAAGGGTATGAATTGAGCTTAAATGAAGCTATGAGGATTCAATTAGCCGACCTTAACTTGTTTGGGACTGAGAGGTAGTTTTTTTTTTTCACCCCATGTCTAGGAGCTCCCGCCTTTTGCTCCGTTGGTGACGCAATGCTCTAACCTTAAGGTTGGAGTTGGAGGGTGTTTCCCATCTGAGCAATCCCCACTTGTCGAGAGGTAGTTACTAACTTATTATATTGGTTACAGTGCTGTTAGGACTATGAACAAAAGCGTTTGTCCAACACTTGCACTAAATTAAGTTCAAGCTGTTCTTTATAAATTGGTGTTCTTTTGATTTCTCATTAGTAACAATTGCTATGGTATTTGTTTAACTTCTCCACAGGATAGTTGGATCTTTGAAATGTGTTATGGATGTGAATGTTAAAGCTTGGAGCTGGTGAACTTTTTGTAACGAGGCGGGGTGTATGCTGGAAATGTTTCTGTTGTCTTCTGGATATCTATGATGTGCTAAACGGTTAGATAATATTTCACGATGAGGCCTTCTCAGAACCCTGAGGAAATCAACGAGTTCAACAAATTCTATAACCAACCCATAGAGTATCAAGAATCCTATTTCCTGCCTTCCGTTAACAATCCGAACAACAACCAATCGTTCTATGCTGATGTCTCTGCCTTAAAACCCGCCCAACACTGTTATGTTGAATCATCCGCGGGAAATTCTAGTGAACTTGTTTCTGATTCACCTCCTATTGTTAATTTCAACCCCATGATGAACCAAGGTTCTGATTCGTGTCGTTCAGACATGCATCATTCTCCTGATGATACATTTCAGTCGTCGGGTAACAGTTCGTGCTACACTAGTGATGTTACTGACCTGAAGCACAAGTTAAGGGAACTTGAAACTGCAATGCTGGGGCCAGATTCAGAAAGCTTGGAATCATTTAATAATACTATCCCTGTGACTGCAG</genome_strand>
        <mrna_strand>ATTTTATTACAATGTTGAAAATCAAGATTGATTATTTTTTTCT--GACTTTCATTTTAGTATTTTCTTCACCACTAGTGGCTTCCTAAAAATGGAATATGCCTTGTCTAAAAGTTAGC-TTTTTTCTCTGATTACTTCATTAACCATGTTCTTCAA--TTTTTGCTTAACATTTCTTCTCTGAGTATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTTGGATGATTGAAATGTGTTATGGATGTGAATGTTAAAGCTTGGAGCTGGTGAACTTTTTGTTACGATGCCGGGTGTATGCTGG-AA-------------------A-ATCTATGATGTGCTAAACCGGTAGATAATATTTCACAATGAGGCCTTCTCAAAACCCTGAGGATATCAACGAGTTCAACAGATTCTATAACCAACCCATAGAGTATCAAGAATCCTATTTCCTGCCTTCTATTAACAATCCAAACAACAACCAATCGTACTATGCTGATGTCTCTGCCTTAAAACCCGACCAACACTGCTATGTTGAATCATCCACGGGAAATTCTAGTGAACTTGTTTCCGATTCACCTCCTATTGTTAATTTCAACCCCATGATGCAGCAAGGTTCTGATTCATGGCGTTCAGACATGCATCATTCTCCTGATGATACATTTCAATCATCGGGTAACAGTTCGTGCTACACTAGTGATGTTACTGACCTGAAGCACAAGTTAAGGGAACTTGAAACTGCAATGCTGGGGCCAGATTCAGAAAGCATGGAATCA--T-ATAATACTATCCCTGTGGCTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E412585" ref_strand="+" ref_description="SGN-E412585 [STM-16-D11]">
      <seq>cttcaatctttttgcttaagatttcttctctgagtatcaggatagttggatctttgaaatgtgttatggatgtgaatgttaaagcttggagctggtgaactttttgttaacgaggcggggtgtatgctggaattgttcctgttgtcttctggatatctatgatgtgctaaacgggtagataatatttcacgatgaggccttctcaaaaccctgaggatatcaacgagtttaacagattctataaccaacccatagagtatcaagaatcctatttcctgccttccattaacaatccgaacaacaaccaatcgttctatgctgatgtctctaccttaaaacccgaccaacactgttatgttgaatcatccgcgggaaattctagtgaacttgtttccgattcacctcctattgttaatttcaaccccatgatgcagcaaggttctgattcatggcgttcagacatgcatcattctcctgatgatacatttcaatcatcggctaacagttcgtgctacactagtgatgttactgacctgaagcacaagttaagggaacttgaaactgcaatgctggggccagattcagaaagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="100603" stop="98169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100303" g_stop="100264" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100263" i_stop="99021" i_length="1243">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99020" g_stop="98470" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="592" r_length="552" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E412585" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E412585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100303" e_stop="100264"/>
          <exon e_start="99020" e_stop="98470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAATCTTTTTGCTTAAGATTTCTTCTCTGAGTATCAGGTATGCTTTCTTTCACTGTTTTTTTTTTTTGATAATCTGAAGATATGGGAAGTTATAATTGTTGTAAAAAGTTGAATCTTTTTGTGTTAACTTGATAGAAATTGAATTCTTTTGTATGAACTTGGAACCCCTTTTCATTCTTGAAAAAAAATTTGGATCTTTTTGTATAAACTTGAAAAAAAAAATTGAATCTTTTTGTATTAACTTGAAACCTATTTCATTCTTGGAAAAAAAATGGATCTTTTTGTTTTTCTTGTTTTAGTTTTTTGTTGTTGGGGTGGGGGTTCTTTATGTTTAGCTAATTCTGGTGTTAGGATGCAAGTGGTAAGCTTCAGTTCTTTATGTTTAGCTAAATTCTGGTGTTAAGATGCAAGTGGTAAGCTTCATTTCTTTGTAATTTTTAGAAAGCATTTGAGACATTTTAATTTTTTGGGTTTTGTGGATGGGAATAGTTTGTTTGCCAGTAAATCTGAGAGAAATTCAGTGAATTCTTTTTTGTTATGATGAAAATTAGGGGTTTCATTCTCTATATAGAAGATCTATAAGGCTAAGGCAGTGGGCAGTGGGTAGTGGGGACCTAACCCTTCAGCCTAGACCTTTTTAAAGTGCTTTGGTAAAAGATTGCAACTATGGTTAAAGTGCTTTTTTTTTATATGATGAAGGGTATGGGTTGAGGTTAAATGAGCTGACCCAACTTGTTTGGGTCTGAGAGTTCAGTTTTTTTCTTTTCACCCTTCCCTAGGAGCTCCGACCTTTTGGTTCCTTGGTGAGTCGAATCCGCAACCTTAAGATTGGAGGTGGAGGGTGCTTACCATCTAGGCCACCCCTCTTGTCGAGAGATAGTTGTTTGATTAAAGTGCTTTTATTTGATATGATGAAGGGTATGAATTGAGCTTAAATGAAGCTATGAGGATTCAATTAGCCGACCTTAACTTGTTTGGGACTGAGAGGTAGTTTTTTTTTTTCACCCCATGTCTAGGAGCTCCCGCCTTTTGCTCCGTTGGTGACGCAATGCTCTAACCTTAAGGTTGGAGTTGGAGGGTGTTTCCCATCTGAGCAATCCCCACTTGTCGAGAGGTAGTTACTAACTTATTATATTGGTTACAGTGCTGTTAGGACTATGAACAAAAGCGTTTGTCCAACACTTGCACTAAATTAAGTTCAAGCTGTTCTTTATAAATTGGTGTTCTTTTGATTTCTCATTAGTAACAATTGCTATGGTATTTGTTTAACTTCTCCACAGGATAGTTGGATCTTTGAAATGTGTTATGGATGTGAATGTTAAAGCTTGGAGCTGGTGAACTTTTTG-TAACGAGGCGGGGTGTATGCTGGAAATGTTTCTGTTGTCTTCTGGATATCTATGATGTGCTAAACGGTTAGATAATATTTCACGATGAGGCCTTCTCAGAACCCTGAGGAAATCAACGAGTTCAACAAATTCTATAACCAACCCATAGAGTATCAAGAATCCTATTTCCTGCCTTCCGTTAACAATCCGAACAACAACCAATCGTTCTATGCTGATGTCTCTGCCTTAAAACCCGCCCAACACTGTTATGTTGAATCATCCGCGGGAAATTCTAGTGAACTTGTTTCTGATTCACCTCCTATTGTTAATTTCAACCCCATGATGAACCAAGGTTCTGATTCGTGTCGTTCAGACATGCATCATTCTCCTGATGATACATTTCAGTCGTCGGGTAACAGTTCGTGCTACACTAGTGATGTTACTGACCTGAAGCACAAGTTAAGGGAACTTGAAACTGCAATGCTGGGGCCAGATTCAGAAAGCTT</genome_strand>
        <mrna_strand>CTTCAATCTTTTTGCTTAAGATTTCTTCTCTGAGTATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTTGGATCTTTGAAATGTGTTATGGATGTGAATGTTAAAGCTTGGAGCTGGTGAACTTTTTGTTAACGAGGCGGGGTGTATGCTGGAATTGTTCCTGTTGTCTTCTGGATATCTATGATGTGCTAAACGGGTAGATAATATTTCACGATGAGGCCTTCTCAAAACCCTGAGGATATCAACGAGTTTAACAGATTCTATAACCAACCCATAGAGTATCAAGAATCCTATTTCCTGCCTTCCATTAACAATCCGAACAACAACCAATCGTTCTATGCTGATGTCTCTACCTTAAAACCCGACCAACACTGTTATGTTGAATCATCCGCGGGAAATTCTAGTGAACTTGTTTCCGATTCACCTCCTATTGTTAATTTCAACCCCATGATGCAGCAAGGTTCTGATTCATGGCGTTCAGACATGCATCATTCTCCTGATGATACATTTCAATCATCGGCTAACAGTTCGTGCTACACTAGTGATGTTACTGACCTGAAGCACAAGTTAAGGGAACTTGAAACTGCAATGCTGGGGCCAGATTCAGAAAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E470872" ref_strand="+" ref_description="SGN-E470872 [cSTB-21-G13]">
      <seq>cttcaatctttttgcttaagatttcttctctgagtatcaggatagttggatctttgaaatgtgttatggatgtgaatgttaaagcttggagctggtgaactttttgttaacgaggcggggtgtatgctggaattgttcctgttgtcttctggatatctatgatgtgctaaacgggtagataatatttcacgatgaggccttctcaaaaccctgaggatatcaacgagtttaacagattctataaccaacccatagagtatcaagaatcctatttcctgccttccattaacaatccgaacaacaaccaatcgttctatgctgatgtctctaccttaaaacccgaccaacactgttatgttgaatcatccgcgggaaattctagtgaacttgtttccgattcacctcctattgttaatttcaaccccatgatgcagcaaggttctgattcatggcgttcagacatgcatcattctcctgatgatacatttcaatcatcggctaacagttcgtgctacactagtgatgttactgacctgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="100603" stop="98223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100303" g_stop="100264" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100263" i_stop="99021" i_length="1243">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99020" g_stop="98523" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="539" r_length="499" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E470872" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100303" e_stop="100264"/>
          <exon e_start="99020" e_stop="98523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAATCTTTTTGCTTAAGATTTCTTCTCTGAGTATCAGGTATGCTTTCTTTCACTGTTTTTTTTTTTTGATAATCTGAAGATATGGGAAGTTATAATTGTTGTAAAAAGTTGAATCTTTTTGTGTTAACTTGATAGAAATTGAATTCTTTTGTATGAACTTGGAACCCCTTTTCATTCTTGAAAAAAAATTTGGATCTTTTTGTATAAACTTGAAAAAAAAAATTGAATCTTTTTGTATTAACTTGAAACCTATTTCATTCTTGGAAAAAAAATGGATCTTTTTGTTTTTCTTGTTTTAGTTTTTTGTTGTTGGGGTGGGGGTTCTTTATGTTTAGCTAATTCTGGTGTTAGGATGCAAGTGGTAAGCTTCAGTTCTTTATGTTTAGCTAAATTCTGGTGTTAAGATGCAAGTGGTAAGCTTCATTTCTTTGTAATTTTTAGAAAGCATTTGAGACATTTTAATTTTTTGGGTTTTGTGGATGGGAATAGTTTGTTTGCCAGTAAATCTGAGAGAAATTCAGTGAATTCTTTTTTGTTATGATGAAAATTAGGGGTTTCATTCTCTATATAGAAGATCTATAAGGCTAAGGCAGTGGGCAGTGGGTAGTGGGGACCTAACCCTTCAGCCTAGACCTTTTTAAAGTGCTTTGGTAAAAGATTGCAACTATGGTTAAAGTGCTTTTTTTTTATATGATGAAGGGTATGGGTTGAGGTTAAATGAGCTGACCCAACTTGTTTGGGTCTGAGAGTTCAGTTTTTTTCTTTTCACCCTTCCCTAGGAGCTCCGACCTTTTGGTTCCTTGGTGAGTCGAATCCGCAACCTTAAGATTGGAGGTGGAGGGTGCTTACCATCTAGGCCACCCCTCTTGTCGAGAGATAGTTGTTTGATTAAAGTGCTTTTATTTGATATGATGAAGGGTATGAATTGAGCTTAAATGAAGCTATGAGGATTCAATTAGCCGACCTTAACTTGTTTGGGACTGAGAGGTAGTTTTTTTTTTTCACCCCATGTCTAGGAGCTCCCGCCTTTTGCTCCGTTGGTGACGCAATGCTCTAACCTTAAGGTTGGAGTTGGAGGGTGTTTCCCATCTGAGCAATCCCCACTTGTCGAGAGGTAGTTACTAACTTATTATATTGGTTACAGTGCTGTTAGGACTATGAACAAAAGCGTTTGTCCAACACTTGCACTAAATTAAGTTCAAGCTGTTCTTTATAAATTGGTGTTCTTTTGATTTCTCATTAGTAACAATTGCTATGGTATTTGTTTAACTTCTCCACAGGATAGTTGGATCTTTGAAATGTGTTATGGATGTGAATGTTAAAGCTTGGAGCTGGTGAACTTTTTG-TAACGAGGCGGGGTGTATGCTGGAAATGTTTCTGTTGTCTTCTGGATATCTATGATGTGCTAAACGGTTAGATAATATTTCACGATGAGGCCTTCTCAGAACCCTGAGGAAATCAACGAGTTCAACAAATTCTATAACCAACCCATAGAGTATCAAGAATCCTATTTCCTGCCTTCCGTTAACAATCCGAACAACAACCAATCGTTCTATGCTGATGTCTCTGCCTTAAAACCCGCCCAACACTGTTATGTTGAATCATCCGCGGGAAATTCTAGTGAACTTGTTTCTGATTCACCTCCTATTGTTAATTTCAACCCCATGATGAACCAAGGTTCTGATTCGTGTCGTTCAGACATGCATCATTCTCCTGATGATACATTTCAGTCGTCGGGTAACAGTTCGTGCTACACTAGTGATGTTACTGACCTGAAG</genome_strand>
        <mrna_strand>CTTCAATCTTTTTGCTTAAGATTTCTTCTCTGAGTATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTTGGATCTTTGAAATGTGTTATGGATGTGAATGTTAAAGCTTGGAGCTGGTGAACTTTTTGTTAACGAGGCGGGGTGTATGCTGGAATTGTTCCTGTTGTCTTCTGGATATCTATGATGTGCTAAACGGGTAGATAATATTTCACGATGAGGCCTTCTCAAAACCCTGAGGATATCAACGAGTTTAACAGATTCTATAACCAACCCATAGAGTATCAAGAATCCTATTTCCTGCCTTCCATTAACAATCCGAACAACAACCAATCGTTCTATGCTGATGTCTCTACCTTAAAACCCGACCAACACTGTTATGTTGAATCATCCGCGGGAAATTCTAGTGAACTTGTTTCCGATTCACCTCCTATTGTTAATTTCAACCCCATGATGCAGCAAGGTTCTGATTCATGGCGTTCAGACATGCATCATTCTCCTGATGATACATTTCAATCATCGGCTAACAGTTCGTGCTACACTAGTGATGTTACTGACCTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E302896" ref_strand="+" ref_description="SGN-E302896 [cLEW-26-A18]">
      <seq>agctggtgaactttttggaacgaggcccggtgtatgctggaaatgcttctgttgtcttctggatatctatgatgtgctaaacggttagataatatttcacgatgaggccttctcagaaccctgaggaaatcaacgagttcaacaaattctataaccaacccatagagtatcaagaatcctatttcctgccttccgttaacaatccgaacaacaaccaatcgttctatgctgatgtctctgccttaaaacccgcccaacactgttatgttgaatcatccgcgggaaattctagtgaacttgtttctgattcacctcctattgttaatttcaaccccatgatgaaccaaggttctgattcgtgtcgttcagacatgcatcattctcctgatgatacatttcagtcgtcgggtaacagttcgtgctacactagtgatgttactgacctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="99271" stop="98225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98971" g_stop="98525" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E302896" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98971" e_stop="98525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGGTGAACTTTTTGTAACGAGGCGGGGTGTATGCTGGAAATGTTTCTGTTGTCTTCTGGATATCTATGATGTGCTAAACGGTTAGATAATATTTCACGATGAGGCCTTCTCAGAACCCTGAGGAAATCAACGAGTTCAACAAATTCTATAACCAACCCATAGAGTATCAAGAATCCTATTTCCTGCCTTCCGTTAACAATCCGAACAACAACCAATCGTTCTATGCTGATGTCTCTGCCTTAAAACCCGCCCAACACTGTTATGTTGAATCATCCGCGGGAAATTCTAGTGAACTTGTTTCTGATTCACCTCCTATTGTTAATTTCAACCCCATGATGAACCAAGGTTCTGATTCGTGTCGTTCAGACATGCATCATTCTCCTGATGATACATTTCAGTCGTCGGGTAACAGTTCGTGCTACACTAGTGATGTTACTGACCTGA</genome_strand>
        <mrna_strand>AGCTGGTGAACTTTTTGGAACGAGGCCCGGTGTATGCTGGAAATGCTTCTGTTGTCTTCTGGATATCTATGATGTGCTAAACGGTTAGATAATATTTCACGATGAGGCCTTCTCAGAACCCTGAGGAAATCAACGAGTTCAACAAATTCTATAACCAACCCATAGAGTATCAAGAATCCTATTTCCTGCCTTCCGTTAACAATCCGAACAACAACCAATCGTTCTATGCTGATGTCTCTGCCTTAAAACCCGCCCAACACTGTTATGTTGAATCATCCGCGGGAAATTCTAGTGAACTTGTTTCTGATTCACCTCCTATTGTTAATTTCAACCCCATGATGAACCAAGGTTCTGATTCGTGTCGTTCAGACATGCATCATTCTCCTGATGATACATTTCAGTCGTCGGGTAACAGTTCGTGCTACACTAGTGATGTTACTGACCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E412193" ref_strand="+" ref_description="SGN-E412193 [STM-15-L10]">
      <seq>cattaaccatgttcttcaatctttttgcttaagatttcttctctgagtatcaggatagttggatctttgaaatgtgttatggatgtgaatgttaaagcttggagctggtgaactttttgttaacgaggcggggtgtatgctggaattgttcctgttgtcttctggatatctatgatgtgctaaacgggtagataatatttcacgatgaggccttctcaaaaccctgaggatatcaacgagtttaacagattctataaccaacccatagagtatcaagaatcctatttcctgccttccattaacaatccgaacaacaaccaatcgttctatgctgatgtctctaccttaaaacccgaccaacactgttatgttgaatcatccgcgggaaattctagtgaacttgtttccgattcacctcctattgttaatttcaaccccatgatgcagcaaggttctgattcatggcgttcagacatgcatcattctcctgatgatacatttcaatcatcggctaacagttcgtgctacactagtgatgttactgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="100616" stop="98229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100316" g_stop="100264" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100263" i_stop="99021" i_length="1243">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99020" g_stop="98529" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="546" r_length="493" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E412193" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E412193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100316" e_stop="100264"/>
          <exon e_start="99020" e_stop="98529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTAACCATGTTCTTCAATCTTTTTGCTTAAGATTTCTTCTCTGAGTATCAGGTATGCTTTCTTTCACTGTTTTTTTTTTTTGATAATCTGAAGATATGGGAAGTTATAATTGTTGTAAAAAGTTGAATCTTTTTGTGTTAACTTGATAGAAATTGAATTCTTTTGTATGAACTTGGAACCCCTTTTCATTCTTGAAAAAAAATTTGGATCTTTTTGTATAAACTTGAAAAAAAAAATTGAATCTTTTTGTATTAACTTGAAACCTATTTCATTCTTGGAAAAAAAATGGATCTTTTTGTTTTTCTTGTTTTAGTTTTTTGTTGTTGGGGTGGGGGTTCTTTATGTTTAGCTAATTCTGGTGTTAGGATGCAAGTGGTAAGCTTCAGTTCTTTATGTTTAGCTAAATTCTGGTGTTAAGATGCAAGTGGTAAGCTTCATTTCTTTGTAATTTTTAGAAAGCATTTGAGACATTTTAATTTTTTGGGTTTTGTGGATGGGAATAGTTTGTTTGCCAGTAAATCTGAGAGAAATTCAGTGAATTCTTTTTTGTTATGATGAAAATTAGGGGTTTCATTCTCTATATAGAAGATCTATAAGGCTAAGGCAGTGGGCAGTGGGTAGTGGGGACCTAACCCTTCAGCCTAGACCTTTTTAAAGTGCTTTGGTAAAAGATTGCAACTATGGTTAAAGTGCTTTTTTTTTATATGATGAAGGGTATGGGTTGAGGTTAAATGAGCTGACCCAACTTGTTTGGGTCTGAGAGTTCAGTTTTTTTCTTTTCACCCTTCCCTAGGAGCTCCGACCTTTTGGTTCCTTGGTGAGTCGAATCCGCAACCTTAAGATTGGAGGTGGAGGGTGCTTACCATCTAGGCCACCCCTCTTGTCGAGAGATAGTTGTTTGATTAAAGTGCTTTTATTTGATATGATGAAGGGTATGAATTGAGCTTAAATGAAGCTATGAGGATTCAATTAGCCGACCTTAACTTGTTTGGGACTGAGAGGTAGTTTTTTTTTTTCACCCCATGTCTAGGAGCTCCCGCCTTTTGCTCCGTTGGTGACGCAATGCTCTAACCTTAAGGTTGGAGTTGGAGGGTGTTTCCCATCTGAGCAATCCCCACTTGTCGAGAGGTAGTTACTAACTTATTATATTGGTTACAGTGCTGTTAGGACTATGAACAAAAGCGTTTGTCCAACACTTGCACTAAATTAAGTTCAAGCTGTTCTTTATAAATTGGTGTTCTTTTGATTTCTCATTAGTAACAATTGCTATGGTATTTGTTTAACTTCTCCACAGGATAGTTGGATCTTTGAAATGTGTTATGGATGTGAATGTTAAAGCTTGGAGCTGGTGAACTTTTTG-TAACGAGGCGGGGTGTATGCTGGAAATGTTTCTGTTGTCTTCTGGATATCTATGATGTGCTAAACGGTTAGATAATATTTCACGATGAGGCCTTCTCAGAACCCTGAGGAAATCAACGAGTTCAACAAATTCTATAACCAACCCATAGAGTATCAAGAATCCTATTTCCTGCCTTCCGTTAACAATCCGAACAACAACCAATCGTTCTATGCTGATGTCTCTGCCTTAAAACCCGCCCAACACTGTTATGTTGAATCATCCGCGGGAAATTCTAGTGAACTTGTTTCTGATTCACCTCCTATTGTTAATTTCAACCCCATGATGAACCAAGGTTCTGATTCGTGTCGTTCAGACATGCATCATTCTCCTGATGATACATTTCAGTCGTCGGGTAACAGTTCGTGCTACACTAGTGATGTTACTGAC</genome_strand>
        <mrna_strand>CATTAACCATGTTCTTCAATCTTTTTGCTTAAGATTTCTTCTCTGAGTATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTTGGATCTTTGAAATGTGTTATGGATGTGAATGTTAAAGCTTGGAGCTGGTGAACTTTTTGTTAACGAGGCGGGGTGTATGCTGGAATTGTTCCTGTTGTCTTCTGGATATCTATGATGTGCTAAACGGGTAGATAATATTTCACGATGAGGCCTTCTCAAAACCCTGAGGATATCAACGAGTTTAACAGATTCTATAACCAACCCATAGAGTATCAAGAATCCTATTTCCTGCCTTCCATTAACAATCCGAACAACAACCAATCGTTCTATGCTGATGTCTCTACCTTAAAACCCGACCAACACTGTTATGTTGAATCATCCGCGGGAAATTCTAGTGAACTTGTTTCCGATTCACCTCCTATTGTTAATTTCAACCCCATGATGCAGCAAGGTTCTGATTCATGGCGTTCAGACATGCATCATTCTCCTGATGATACATTTCAATCATCGGCTAACAGTTCGTGCTACACTAGTGATGTTACTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E470186" ref_strand="+" ref_description="SGN-E470186 [cSTB-17-C6]">
      <seq>cattaaccatgttcttcaatctttttgcttaagatttcttctctgagtatcaggatagttggatctttgaaatgtgttatggatgtgaatgttaaagcttggagctggtgaactttttgttaacgaggcggggtgtatgctggaattgttcctgttgtcttctggatatctatgatgtgctaaacgggtagataatatttcacgatgaggccttctcaaaaccctgaggatatcaacgagtttaacagattctataaccaacccatagagtatcaagaatcctatttcctgccttccattaacaatccgaacaacaaccaatcgttctatgctgatgtctctaccttaaaacccgaccaacactgttatgttgaatcatccgcgggaaattctagtgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="100616" stop="98375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100316" g_stop="100264" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100263" i_stop="99021" i_length="1243">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99020" g_stop="98675" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="400" r_length="347" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E470186" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100316" e_stop="100264"/>
          <exon e_start="99020" e_stop="98675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTAACCATGTTCTTCAATCTTTTTGCTTAAGATTTCTTCTCTGAGTATCAGGTATGCTTTCTTTCACTGTTTTTTTTTTTTGATAATCTGAAGATATGGGAAGTTATAATTGTTGTAAAAAGTTGAATCTTTTTGTGTTAACTTGATAGAAATTGAATTCTTTTGTATGAACTTGGAACCCCTTTTCATTCTTGAAAAAAAATTTGGATCTTTTTGTATAAACTTGAAAAAAAAAATTGAATCTTTTTGTATTAACTTGAAACCTATTTCATTCTTGGAAAAAAAATGGATCTTTTTGTTTTTCTTGTTTTAGTTTTTTGTTGTTGGGGTGGGGGTTCTTTATGTTTAGCTAATTCTGGTGTTAGGATGCAAGTGGTAAGCTTCAGTTCTTTATGTTTAGCTAAATTCTGGTGTTAAGATGCAAGTGGTAAGCTTCATTTCTTTGTAATTTTTAGAAAGCATTTGAGACATTTTAATTTTTTGGGTTTTGTGGATGGGAATAGTTTGTTTGCCAGTAAATCTGAGAGAAATTCAGTGAATTCTTTTTTGTTATGATGAAAATTAGGGGTTTCATTCTCTATATAGAAGATCTATAAGGCTAAGGCAGTGGGCAGTGGGTAGTGGGGACCTAACCCTTCAGCCTAGACCTTTTTAAAGTGCTTTGGTAAAAGATTGCAACTATGGTTAAAGTGCTTTTTTTTTATATGATGAAGGGTATGGGTTGAGGTTAAATGAGCTGACCCAACTTGTTTGGGTCTGAGAGTTCAGTTTTTTTCTTTTCACCCTTCCCTAGGAGCTCCGACCTTTTGGTTCCTTGGTGAGTCGAATCCGCAACCTTAAGATTGGAGGTGGAGGGTGCTTACCATCTAGGCCACCCCTCTTGTCGAGAGATAGTTGTTTGATTAAAGTGCTTTTATTTGATATGATGAAGGGTATGAATTGAGCTTAAATGAAGCTATGAGGATTCAATTAGCCGACCTTAACTTGTTTGGGACTGAGAGGTAGTTTTTTTTTTTCACCCCATGTCTAGGAGCTCCCGCCTTTTGCTCCGTTGGTGACGCAATGCTCTAACCTTAAGGTTGGAGTTGGAGGGTGTTTCCCATCTGAGCAATCCCCACTTGTCGAGAGGTAGTTACTAACTTATTATATTGGTTACAGTGCTGTTAGGACTATGAACAAAAGCGTTTGTCCAACACTTGCACTAAATTAAGTTCAAGCTGTTCTTTATAAATTGGTGTTCTTTTGATTTCTCATTAGTAACAATTGCTATGGTATTTGTTTAACTTCTCCACAGGATAGTTGGATCTTTGAAATGTGTTATGGATGTGAATGTTAAAGCTTGGAGCTGGTGAACTTTTTG-TAACGAGGCGGGGTGTATGCTGGAAATGTTTCTGTTGTCTTCTGGATATCTATGATGTGCTAAACGGTTAGATAATATTTCACGATGAGGCCTTCTCAGAACCCTGAGGAAATCAACGAGTTCAACAAATTCTATAACCAACCCATAGAGTATCAAGAATCCTATTTCCTGCCTTCCGTTAACAATCCGAACAACAACCAATCGTTCTATGCTGATGTCTCTGCCTTAAAACCCGCCCAACACTGTTATGTTGAATCATCCGCGGGAAATTCTAGTGAAC</genome_strand>
        <mrna_strand>CATTAACCATGTTCTTCAATCTTTTTGCTTAAGATTTCTTCTCTGAGTATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTTGGATCTTTGAAATGTGTTATGGATGTGAATGTTAAAGCTTGGAGCTGGTGAACTTTTTGTTAACGAGGCGGGGTGTATGCTGGAATTGTTCCTGTTGTCTTCTGGATATCTATGATGTGCTAAACGGGTAGATAATATTTCACGATGAGGCCTTCTCAAAACCCTGAGGATATCAACGAGTTTAACAGATTCTATAACCAACCCATAGAGTATCAAGAATCCTATTTCCTGCCTTCCATTAACAATCCGAACAACAACCAATCGTTCTATGCTGATGTCTCTACCTTAAAACCCGACCAACACTGTTATGTTGAATCATCCGCGGGAAATTCTAGTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E721672" ref_strand="+" ref_description="SGN-E721672 [FC14DD03]">
      <seq>ggagtatccgccgccggctagtgaccagaagaagagcagctaagaaggaagatgaatactgatatcacagcatcggcaaagcccgagtatccagttgtagatcgaaacccaccgtttactaaaaccgtcggtaatttcaacacactcgattacctccggctcaccaccatcaccgggatttctgtcaccgtcggatacctctccggaataaagccagggattagagggccatcgatggttaccggaggtttgattgggctaatgggtggtttcatgtatgcttatcaaaattcagctggcaggctcatgggtttcttcccaaatgaaggagaggtagccaaagccaagtacaagatttaactgcttcccttaattttctggttcttttggattcccttttgtagtttccccaagatgttattaaaacagtgggcattctctcttctcatgagaactttgttgaaagtaataccattaataatcagtctctggttaccaacttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattccccccccaagggggccccctttttttttttttggggccccaaaaaaagggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="105187" stop="76145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104887" g_stop="104683" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104682" i_stop="104191" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104190" g_stop="103892" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="504" r_length="299" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103891" i_stop="100610" i_length="3282">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100609" g_stop="100527" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="587" r_length="83" r_score="0.530"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100526" i_stop="100245" i_length="282">
            <donor d_prob="0.585" d_score="0.42"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100244" g_stop="100213" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="619" r_length="32" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E721672" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104887" e_stop="104683"/>
          <exon e_start="104190" e_stop="103892"/>
          <exon e_start="100609" e_stop="100527"/>
          <exon e_start="100244" e_stop="100213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCGGTAACTTCTCTATCCTTTACTGTTATCATTCATTCGATTTACTGAAGCTTAAATTGTAAATCTGTTTGGATTTGTCATTTGGATTACACTTTTTATGGAGCCGGGTAGTGCTGAGGGGTTTATCCGATTCTCCTTCGGTGGAAAGTCATATAATTTATACATGGTATATTAGATGTTGAAGCCCTTTAGCTTATTCGTGAGTTTAGTTCTTGGTATTTTGAATCACTTAGTGAAAATTCTTGTTACGTCACTGTAATTATATTTTGGGAAGGAACTAGAAGGTAGGAAGCTGGTTTGACAGAATTCAGTAGTTTTGGTTCAAATCATATATTTATCTTAAGAAATTTATGTAGACATTATTAGTTTGGAATCAGTAATTCAAAAGGAGTATAATCCTGAACCTGTAAGCTTCAAATTCAAATCCTAGCTCAGCTTGTGCTAACATAAGCAAGTTATCTCCTTTGTTATTGATAAATTTTGGATTTTGGGCAGGAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAATATGATTTCTTGTGTTGCGATGAATCATGTATTATTGTTACTTGCTAATAATGATGTGTTGACTATGCATTATTTAGTATGATAATGTTTTGAAATCAGCTTAAATGAGAGAATTGAGATTTATGTAGCCAACATGTTTGGGACTCAAGATTCGCTGTTGTTATTTTTTAATCAAGTGGATCATATGCTTCACATTCTTTATGCCACCAATTGATCATAGACTGATAGAAGTATATTGGAGTTTCATTCTCTTCTTTTGGCTTGTCCTGTGTGTTCTTATTATCAGTGTTGTGAATGGCGAGCGAAAATCGAAAAGCATATATATCTGTACCTAGACACTAGAACAGCGAAAAACAATCCATCTCCATAGTAACTTATCGTCACAAGTAAAACAGAAGCTTTTGTAGGGAATCAGTTAATTAAGAAGCAGGCATGGTTCTGGAGGAGGGTAGCATTGCAAGTAATGACTTGCTTGAAGTTGTTGATGTTAACTCTTTGCAATGCAGGCTGGATATAGCAGCAAGTGCTTACCCTTGTTGTCCCTTTTGTAGTTTCCGGGGATATTATGAAAATAGTGGGCATTTCTCACTTCTATATCACTACTTTGTTGAAAGTAATATCTTTAATAATCAGTCTGTGGTTACTGACTTATTACGGTTACTATGAATCATGGCTTCTCCTGACTTGCTAATAATGATGAGTTGACTATGCATTTTTTTAGTGTGATGATGTTATGAAATGAACTTAAATGAGAGAATTGAGATTCATATAGCCGACCCCAACTTGTTTGGGACTTGGGCGTAGTAGTTGTTAAATTTGAATTAATTAGATCTTATACTTCACATTCTTTATGCCACCAATTGATCATAGAAGTATAACGGAGTTGAATTCTCTTCTTTTGGCTTGTCCTGTGTGTTCTTAAATGAAGTGCAAGGATTCATATAGCTGACCCCAACTTGTTTGGGATTGAGCATAGTTGTTGTTGTGTTTTCTTTTCTGAAAGAGAGGGATAGGATGGGAACAAGGTGGAATCCTATCAAGCAGGTTCACTTGAGTTATGCTAGTAATATCGGTCTTTTGATTCTGATTCTTACTGTCATACCCTTACTTAGCTTCTTGAAGCTGAAACATTCAATTTGTTTCATGATTAGATATACCCTAAGTTTAAAACATTTTCTCCTATAAAGCCGCAACTTAGCTACAAATTATTTTATTTTCTAGGAAAGTAACATTCCTGTGAAAGTTTCTTTTTAGATGGGGGGAAATGCAAATAGAGAATGCCCTAAGTTTACGCATTTCCTCCCATAAAGCCGCAACTTAGCTATAAATTATTTTATTTTCCAGGAAAGTAACATTCCTGTGAAAGTTTCTTTTTATATGTGGGGAAAATGCAAATAGAGAATATGAATGACAACAGAAATGATATCATGTGCAAGCTGTAAAAATACTTTTCATACTTAGCTTTGTGATGACAGACAAGCTAAATTTGATAAGGCAGTTGTAGAATTTCAAACAAGCAATAAATCTGAACCTAGAGGCTATGACACTGAAAAACTCTTTGTTTGCATAGTAACTCATTTCACAAGTAAAAAACATAGCTTCATGTTTCTGGAGGACGGGAGCATTGCAAGTGATGACTTGCTTGAAGTTCTTGATGTCAACTTTTTCAATGCAGATTGTATACAGTAGCAAGTGCTTACCCTTGTCGAAAATGTTATCAAGCAACAAATTACAGGATGTCCTAAGTATTCAACTAGATGCTTCTTTTGTTGTTCGCATACCTCCAGAAATGTGTTTGTTGAACAGGAGACGATGTTGTTAACTCTTTCAATGCAGGTTGGATATTGTAACAGATGCTTATCATTGTCGAGAATGATGTCAACCAACAAAGGAGAGGAAGTCTCAATTATTCAACTAGATGTTTCATCTTTATATTGTTGTTGAAGTTTTGTTGTTGCATTCTGGTAACTTTTACTTCTAGAAATGTGTTTGTTGAATAGGGATCGATGTGTTGCTCTCGTTATCTGGTTGCTTTATTGGCCTTCTTTAGTTACATGTTGCATCTGTATGAGCTGCATTTAACTGTTTTTGTTGGCTCTGTGTGGCTGTGGAAGGCCTTCGCGGCTAAACATTACATTGTGTTTATGATCAAACCTATCGTTCAGAAAGTCCTTAAGAACGAGACAGTAATTTCCTTGAAACTACAGTGAAAATGCCTCGTTAAGATTATACAACACCCAAGAAGACTCTTTTACCTTAGGTGTGTGATGAGAGTGTAACATTTGGAGAGTGCAAGTGAAGAACGCAAGCACTCATGATTAACTGGAGTGTGACATTAAGAAAAGGAATGAATCTAACTTTGATGCCACGAAGATAAATGAAATTTGAGTCTAGCTCTACTTCAAATATTAGCTTACGAGGCTCTCGTATATGTAATTATTTGTATAGTCATTGTCTAATAAAATGACTGAATAGTGATAGGCGCAATTGAGTACATCAAGAGAATTATAACTACCGTTAATCAAGGATTAATGAACGCTTAAACATTATACCAATTGAAATTTATTCACTAATCACTTTTCTCATGTTTCAAGCTTGAAGTACCTTAATAATTTGTCCACGTGTAAGTACTCTCCCCATTAATATTGACAAATAGACTTTATATTATAAACAATAATAATATATAGTCTTTTATCTTAAAAAGGACTACAACTTTTTGTTGATAATTGTAATGAGAAAAATGTCATTTAAAAAAAATCAAATTTTAAGATATGTACTAGAAAAGAATTTAAGATGGTCAATTATAGATGACAAAAGGATGTTGTGTAACGTAGAATGTTATTTAATGAAGTAGATGGCGTTTATTTTATTTGCCAGTAATAATAAATTCAATATTTAGATATTGGGTTATCCGTAACAGTTACAAGGCTCCAACAATTTATATTTATGTTTATTTATTTTTAATCCAAAATATATTAATTTGATTATTCATATTCCCATTTCCAAAATTTGAAATTAAAACGCTAATTAAGTACGTAATAGTTCACCCACATATTCTACAATACCAAAAGATATTATAAAGCATTATCAACTTGTAACATCTTAGAAAATTTCAAAATTTGATCTAACATCTCCTCACTAAGTTTTTAATTCGTTTAAAGAAAAGATCAGATCTTAATTTAAGGTAACAAGAACATATTTACAAATACTTTTATATCAATAAAAATTTATCTTATACAATATAAAATAAAAAAATGTTAATTATAAAAAAGTCATTTTTTCAAAATAAAAATTAATTAAAAAAGAACTACAATATGAAGTCAAATAGACTATTATGATTGTACTCCCACCAAAAAGAATTAATGGTGACTAATAAAATATCTTCCCAACCTAAGTCGAGGACAAAAATTTCAGCTTCAACTATTTTTTTTTTCCTGAATTTTATTACAATGTTGAAAATGAAGTTTGATTTTTTTTTTCTCTGACTTTCTTTTTAGTATTTTCTTCACCACTAGTGGCTTACTAAAAATGGAATATGCGTTGTCTAAAGTTAAGCTTTTTTTCTCTGATTATTTCATTAACCATGTTCTTCAATCTTTTTGCTTAAGATTTCTTCTCTGAGTATCAGGTATGCTTTCTTTCACTGTTTTTTTTTTTTGATAATCTGAAGATATGGGAA</genome_strand>
        <mrna_strand>GGAGTATCCGCCGCCGGCTAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAAAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTCCCCCCCCAAGGGGGCCCCCTT..........................................................................................................................................................................................................................................................................................TTTTTTTTTTTGGGGCCCCAAAAAAAGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E722488" ref_strand="+" ref_description="SGN-E722488 [FC17BF12]">
      <seq>ggcggccaaatcggccgaattgatcgtaaaattcaacccgagtatccgccgccggcaagtgaccagaagaagagcagctaagaaggaagatgaatactgatatcacagcatcggcaaagcccgagtatccagttgtagatcgaaacccaccgtttactaaaaccgtcggtaatttcaacacactcgattacctccggctcaccaccatcaccgggatttctgtcaccgtcggatacctctccggaataaagccagggattagagggccatcgatggttaccggaggtttgattgggctaatgggtggtttcatgtatgcttatcagaattcagctggcaggctcatgggtttcttcccaaatgaaggagaggtagccaaagccaagtacaagatttaactgcttcccttaattttctggttcttttggattcccttttgtagtttccccaagatgttattaaaacagtgggcattctctcttctcatgagaactttgttgaaagtaataccattaataatcagtctctggttaccaacttaatatgatttcttgtgttgcgatgaatcatgtattattgttacttgctaataatgatgtgttgactatgcattatttagtatgataatgttttgaaatcagcttaaatgagagaattgagatttatgtagccnannnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="105204" stop="76148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104904" g_stop="104683" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="243" r_length="222" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104682" i_stop="104191" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104190" g_stop="103757" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="677" r_length="434" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103756" i_stop="103606" i_length="151">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.36"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103605" g_stop="103531" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="752" r_length="75" r_score="0.413"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E722488" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104904" e_stop="104683"/>
          <exon e_start="104190" e_stop="103757"/>
          <exon e_start="103605" e_stop="103531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCGTAAAATTCAACTGGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCGGTAACTTCTCTATCCTTTACTGTTATCATTCATTCGATTTACTGAAGCTTAAATTGTAAATCTGTTTGGATTTGTCATTTGGATTACACTTTTTATGGAGCCGGGTAGTGCTGAGGGGTTTATCCGATTCTCCTTCGGTGGAAAGTCATATAATTTATACATGGTATATTAGATGTTGAAGCCCTTTAGCTTATTCGTGAGTTTAGTTCTTGGTATTTTGAATCACTTAGTGAAAATTCTTGTTACGTCACTGTAATTATATTTTGGGAAGGAACTAGAAGGTAGGAAGCTGGTTTGACAGAATTCAGTAGTTTTGGTTCAAATCATATATTTATCTTAAGAAATTTATGTAGACATTATTAGTTTGGAATCAGTAATTCAAAAGGAGTATAATCCTGAACCTGTAAGCTTCAAATTCAAATCCTAGCTCAGCTTGTGCTAACATAAGCAAGTTATCTCCTTTGTTATTGATAAATTTTGGATTTTGGGCAGGAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAATATGATTTCTTGTGTTGCGATGAATCATGTATTATTGTTACTTGCTAATAATGATGTGTTGACTATGCATTATTTAGTATGATAATGTTTTGAAATCAGCTTAAATGAGAGAATTGAGATTTATGTAGCCAACATGTTTGGGACTCAAGATTCGCTGTTGTTATTTTTTAATCAAGTGGATCATATGCTTCACATTCTTTATGCCACCAATTGATCATAGACTGATAGAAGTATATTGGAGTTTCATTCTCTTCTTTTGGCTTGTCCTGTGTGTTCTTATTATCAGTGTTGTGAATGGCGAGCGAAAATCGAAAAGCATATATATCTGTACCTAGACACTAGAACAGCGAAAAACAATCCA</genome_strand>
        <mrna_strand>GATCGTAAAATTCAACCCGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAATATGATTTCTTGTGTTGCGATGAATCATGTATTATTGTTACTTGCTAATAATGATGTGTTGACTATGCATTATTTAGTATGATAATGTTTTGAAATCAGCTTAAATGAGAGAATTGAGATTTATGTAGCCNANNN.......................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E721274" ref_strand="+" ref_description="SGN-E721274 [FC13BC01]">
      <seq>ggccaaatcggccgaattggatcgtaaaattcaactggagtatccgccgccggcaagtgaccagaagaagagcagctaagaaggaagatgaatactgatatcacagcatcggcaaagcccgagtatccagttgtagatcgaaacccaccgtttactaaaaccgtcggtaatttcaacacactcgattacctccggctcaccaccatcaccgggatttctgtcaccgtcggatacctctccggaataaagccagggattagagggccatcgatggttaccggaggtttgattgggctaatgggtggtttcatgtatgcttatcaaaattcagctggcaggctcatgggtttcttcccaaatgaaggagaggtagccaaagccaagtacaagatttaactgcttcccttaattttctggttcttttggattcccttttgtagtttccccaagatgttattaaaacagtgggcattctctcttctcatgagaactttgttgaaagtaataccattaataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="105204" stop="76148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104924" g_stop="104683" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104682" i_stop="104191" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104190" g_stop="103905" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="527" r_length="286" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103904" i_stop="103793" i_length="112">
            <donor d_prob="0.614" d_score="0.82"/>
            <acceptor a_prob="0.960" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103792" g_stop="103757" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="563" r_length="36" r_score="0.389"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E721274" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104924" e_stop="104683"/>
          <exon e_start="104190" e_stop="103905"/>
          <exon e_start="103792" e_stop="103757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGAACTTTGCATTTTCCGATCGTAAAATTCAACTGGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCGGTAACTTCTCTATCCTTTACTGTTATCATTCATTCGATTTACTGAAGCTTAAATTGTAAATCTGTTTGGATTTGTCATTTGGATTACACTTTTTATGGAGCCGGGTAGTGCTGAGGGGTTTATCCGATTCTCCTTCGGTGGAAAGTCATATAATTTATACATGGTATATTAGATGTTGAAGCCCTTTAGCTTATTCGTGAGTTTAGTTCTTGGTATTTTGAATCACTTAGTGAAAATTCTTGTTACGTCACTGTAATTATATTTTGGGAAGGAACTAGAAGGTAGGAAGCTGGTTTGACAGAATTCAGTAGTTTTGGTTCAAATCATATATTTATCTTAAGAAATTTATGTAGACATTATTAGTTTGGAATCAGTAATTCAAAAGGAGTATAATCCTGAACCTGTAAGCTTCAAATTCAAATCCTAGCTCAGCTTGTGCTAACATAAGCAAGTTATCTCCTTTGTTATTGATAAATTTTGGATTTTGGGCAGGAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAATATGATTTCTTGTGTTGCGATGAATCATGTATTATTGTTACTTGCTAATAATGATGTGTTGACTATGCATTATTTAGTATGATAATGTTTTGAAATCAGCTTAAATGAGAGAATTGAGATTTATGTAGCCAACAT</genome_strand>
        <mrna_strand>GGCCAAA-TCGGCCGAATTGGATCGTAAAATTCAACTGGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAAAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAAAAAAAAAAAA................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E541646" ref_strand="-" ref_description="SGN-E541646 [TUS-62-I19]">
      <seq>ggagtatccgccgccggcaagtgaccagaagaagagcagctaagaaggaagatgaatactgatatcacagcatcggcaaagcccgagtatccagttgtagatcgaaacccaccgtttactaaaaccgtcggtaatttcaacacactcgattacctccggctcaccaccatcaccgggatttctgtcaccgtcggatacctctccggaataaagccagggattagagggccatcgatggttaccggaggtttgattgggctaatgggtggtttcatgtatgcttatcagaattcagctggcaggctcatgggtttcttcccaaatgaaggagaggtagccaaagccaagtacaagatttaactgcttcccttaattttctggttcttttggattcccttttgtagtttccccaagatgttattaaaacagtgggcattctctcttctcatgagaactttgttgaaagtaataccattaataatcagtctctggttaccaacttaatatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="105187" stop="103587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104887" g_stop="104683" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104682" i_stop="104191" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104190" g_stop="103891" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="505" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103890" i_stop="103793" i_length="98">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103792" g_stop="103779" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="519" r_length="14" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E541646" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541646" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="104887" e_stop="104683"/>
          <exon e_start="104190" e_stop="103891"/>
          <exon e_start="103792" e_stop="103779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCGGTAACTTCTCTATCCTTTACTGTTATCATTCATTCGATTTACTGAAGCTTAAATTGTAAATCTGTTTGGATTTGTCATTTGGATTACACTTTTTATGGAGCCGGGTAGTGCTGAGGGGTTTATCCGATTCTCCTTCGGTGGAAAGTCATATAATTTATACATGGTATATTAGATGTTGAAGCCCTTTAGCTTATTCGTGAGTTTAGTTCTTGGTATTTTGAATCACTTAGTGAAAATTCTTGTTACGTCACTGTAATTATATTTTGGGAAGGAACTAGAAGGTAGGAAGCTGGTTTGACAGAATTCAGTAGTTTTGGTTCAAATCATATATTTATCTTAAGAAATTTATGTAGACATTATTAGTTTGGAATCAGTAATTCAAAAGGAGTATAATCCTGAACCTGTAAGCTTCAAATTCAAATCCTAGCTCAGCTTGTGCTAACATAAGCAAGTTATCTCCTTTGTTATTGATAAATTTTGGATTTTGGGCAGGAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAATATGATTTCTTGTGTTGCGATGAATCATGTATTATTGTTACTTGCTAATAATGATGTGTTGACTATGCATTATTTAGTATGATAATGTTTTGAAATCAGCTTAAATGAGAGAA</genome_strand>
        <mrna_strand>GGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAAT..................................................................................................ATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E548584" ref_strand="+" ref_description="SGN-E548584 [TUS-62-I19]">
      <seq>ggagtatccgccgccggcaagtgaccagaagaagagcagctaagaaggaagatgaatactgatatcacagcatcggcaaagcccgagtatccagttgtagatcgaaacccaccgtttactaaaaccgtcggtaatttcaacacactcgattacctccggctcaccaccatcaccgggatttctgtcaccgtcggatacctctccggaataaagccagggattagagggccatcgatggttaccggaggtttgattgggctaatgggtggtttcatgtatgcttatcagaattcagctggcaggctcatgggtttcttcccaaatgaaggagaggtagccaaagccaagtacaagatttaactgcttcccttaattttctggttcttttggattcccttttgtagtttccccaagatgttattaaaacagtgggcattctctcttctcatgagaactttgttgaaagtaataccattaataatcagtctctggttaccaacttaatatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="105187" stop="103587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104887" g_stop="104683" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104682" i_stop="104191" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104190" g_stop="103891" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="505" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103890" i_stop="103793" i_length="98">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103792" g_stop="103779" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="519" r_length="14" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E548584" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104887" e_stop="104683"/>
          <exon e_start="104190" e_stop="103891"/>
          <exon e_start="103792" e_stop="103779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCGGTAACTTCTCTATCCTTTACTGTTATCATTCATTCGATTTACTGAAGCTTAAATTGTAAATCTGTTTGGATTTGTCATTTGGATTACACTTTTTATGGAGCCGGGTAGTGCTGAGGGGTTTATCCGATTCTCCTTCGGTGGAAAGTCATATAATTTATACATGGTATATTAGATGTTGAAGCCCTTTAGCTTATTCGTGAGTTTAGTTCTTGGTATTTTGAATCACTTAGTGAAAATTCTTGTTACGTCACTGTAATTATATTTTGGGAAGGAACTAGAAGGTAGGAAGCTGGTTTGACAGAATTCAGTAGTTTTGGTTCAAATCATATATTTATCTTAAGAAATTTATGTAGACATTATTAGTTTGGAATCAGTAATTCAAAAGGAGTATAATCCTGAACCTGTAAGCTTCAAATTCAAATCCTAGCTCAGCTTGTGCTAACATAAGCAAGTTATCTCCTTTGTTATTGATAAATTTTGGATTTTGGGCAGGAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAATATGATTTCTTGTGTTGCGATGAATCATGTATTATTGTTACTTGCTAATAATGATGTGTTGACTATGCATTATTTAGTATGATAATGTTTTGAAATCAGCTTAAATGAGAGAA</genome_strand>
        <mrna_strand>GGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAAT..................................................................................................ATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E299400" ref_strand="+" ref_description="SGN-E299400 [cLET-43-E24]">
      <seq>gagtatccgccgccggcaagtgaccagaagaagagcagctaagaaggaagatgaatactgatatcacagcatcggcaaagcccgagtatccagttgtagatcgaaacccaccgtttactaaaaccgtcggtaatttcaacacactcgattacctccggctcaccaccatcaccgggatttctgtcaccgtcggatacctctccggaataaagccagggattagagggccatcgatggttaccggaggtttgattgggctaatgggtggtttcatgtatgcttatcagaattcagctggcaggctcatgggtttcttcccaaatgaaggagaggtagccaaagccaagtacaagatttaactgcttcccttaattttctggttcttttggattcccttttgtagtttccccaagatgttattaaaacagtgggcattctctcttctcatgagaactttgttgaaagtaataccattaataatcagtctctggttaccaacttaatatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="105186" stop="103587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104886" g_stop="104683" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104682" i_stop="104191" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104190" g_stop="103891" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="504" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103890" i_stop="103793" i_length="98">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103792" g_stop="103779" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="518" r_length="14" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E299400" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104886" e_stop="104683"/>
          <exon e_start="104190" e_stop="103891"/>
          <exon e_start="103792" e_stop="103779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCGGTAACTTCTCTATCCTTTACTGTTATCATTCATTCGATTTACTGAAGCTTAAATTGTAAATCTGTTTGGATTTGTCATTTGGATTACACTTTTTATGGAGCCGGGTAGTGCTGAGGGGTTTATCCGATTCTCCTTCGGTGGAAAGTCATATAATTTATACATGGTATATTAGATGTTGAAGCCCTTTAGCTTATTCGTGAGTTTAGTTCTTGGTATTTTGAATCACTTAGTGAAAATTCTTGTTACGTCACTGTAATTATATTTTGGGAAGGAACTAGAAGGTAGGAAGCTGGTTTGACAGAATTCAGTAGTTTTGGTTCAAATCATATATTTATCTTAAGAAATTTATGTAGACATTATTAGTTTGGAATCAGTAATTCAAAAGGAGTATAATCCTGAACCTGTAAGCTTCAAATTCAAATCCTAGCTCAGCTTGTGCTAACATAAGCAAGTTATCTCCTTTGTTATTGATAAATTTTGGATTTTGGGCAGGAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAATATGATTTCTTGTGTTGCGATGAATCATGTATTATTGTTACTTGCTAATAATGATGTGTTGACTATGCATTATTTAGTATGATAATGTTTTGAAATCAGCTTAAATGAGAGAA</genome_strand>
        <mrna_strand>GAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAAT..................................................................................................ATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E461886" ref_strand="+" ref_description="SGN-E461886 [cPRO-9-L16]">
      <seq>gaccagtaaaagagcagctaagaaggaagatgaacacagatatcacagcatcggcaaagcccgaatatccagttgttgatcggaatccaccgtttactaaaactgtcggtaatttcaacactctcgattacctccgcctcaccaccatcaccggaatttctgtcaccgtcggatacctctccggaataaagccagggataagagggccatcgatggttaccggaggtttgattgggctaatgggtggtttcatgtatgcttaccagaattcagctggcaggctcatgggtttcttcccaaatgaaagagaggtagccaaagccaagtacaagatttaactgcttccctttaattttctggttcttttggattcccttttgtagtttccccgagatgttatgnaaacagtgggaatttctctcttctcatgagaactttgttgaaagtaatatctttaataatcagtctctggttaccaacttattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="105165" stop="103590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104865" g_stop="104683" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104682" i_stop="104191" i_length="492">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104190" g_stop="103893" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="483" r_length="300" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103892" i_stop="103793" i_length="100">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.960" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103792" g_stop="103779" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="496" r_length="13" r_score="0.643"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E461886" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104865" e_stop="104683"/>
          <exon e_start="104190" e_stop="103893"/>
          <exon e_start="103792" e_stop="103779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCGGTAACTTCTCTATCCTTTACTGTTATCATTCATTCGATTTACTGAAGCTTAAATTGTAAATCTGTTTGGATTTGTCATTTGGATTACACTTTTTATGGAGCCGGGTAGTGCTGAGGGGTTTATCCGATTCTCCTTCGGTGGAAAGTCATATAATTTATACATGGTATATTAGATGTTGAAGCCCTTTAGCTTATTCGTGAGTTTAGTTCTTGGTATTTTGAATCACTTAGTGAAAATTCTTGTTACGTCACTGTAATTATATTTTGGGAAGGAACTAGAAGGTAGGAAGCTGGTTTGACAGAATTCAGTAGTTTTGGTTCAAATCATATATTTATCTTAAGAAATTTATGTAGACATTATTAGTTTGGAATCAGTAATTCAAAAGGAGTATAATCCTGAACCTGTAAGCTTCAAATTCAAATCCTAGCTCAGCTTGTGCTAACATAAGCAAGTTATCTCCTTTGTTATTGATAAATTTTGGATTTTGGGCAGGAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCC-TTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATT-CTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAATATGATTTCTTGTGTTGCGATGAATCATGTATTATTGTTACTTGCTAATAATGATGTGTTGACTATGCATTATTTAGTATGATAATGTTTTGAAATCAGCTTAAATGAGAGAA</genome_strand>
        <mrna_strand>GACCAGTAAAAGAGCAGCTAAGAAGGAAGATGAACACAGATATCACAGCATCGGCAAAGCCCGAATATCCAGTTGTTGATCGGAATCCACCGTTTACTAAAACTGTCGGTAATTTCAACACTCTCGATTACCTCCGCCTCACCACCATCACCGGAATTTCTGTCACCGTCGGATACCTCTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAAGCCAGGGATAAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTACCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAAGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCGAGATGTTATGNAAACAGTGGGAATTTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATATCTTTAATAATCAGTCTCTGGTTACCAACTTA....................................................................................................-TTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E711535" ref_strand="+" ref_description="SGN-E711535 [FB02BB01]">
      <seq>agtcccttaaagaagagcagctaagaaggaagatgaatactgatatcccagcatcggcaaagcccgagtatccagttgtagatcgaaacccaccgtttactaaaaccgtcggtaatttcaacacactcgattacctccggctcaccaccatcaccgggatttctgtcaccgtcggatacctctccggaataaagccagggattagagggccatcgatggttaccggaggtttgattgggctaatgggtggtttcatgtatgcttatcagaattcagctggcaggctcatgggtttcttcccaaatgaaggagaggtagccaaagccaagtacaagatttaactgcttcccttaattttctggttcttttggattcccttttgtagtttccccaagatgttattaaaacagtgggcattctctcttctcatgagaactttgttgaaagtaataccattaataatcagtctctggttaccaacttaatatgatttcttgtgttgcgatgaatcatgtattattgttacttgctaataatgatgtgttgactatgcattatttagtatgataatgttttgaaatcagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="105159" stop="103493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104868" g_stop="104683" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104682" i_stop="104191" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104190" g_stop="103783" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="594" r_length="408" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E711535" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104868" e_stop="104683"/>
          <exon e_start="104190" e_stop="103783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCGGTAACTTCTCTATCCTTTACTGTTATCATTCATTCGATTTACTGAAGCTTAAATTGTAAATCTGTTTGGATTTGTCATTTGGATTACACTTTTTATGGAGCCGGGTAGTGCTGAGGGGTTTATCCGATTCTCCTTCGGTGGAAAGTCATATAATTTATACATGGTATATTAGATGTTGAAGCCCTTTAGCTTATTCGTGAGTTTAGTTCTTGGTATTTTGAATCACTTAGTGAAAATTCTTGTTACGTCACTGTAATTATATTTTGGGAAGGAACTAGAAGGTAGGAAGCTGGTTTGACAGAATTCAGTAGTTTTGGTTCAAATCATATATTTATCTTAAGAAATTTATGTAGACATTATTAGTTTGGAATCAGTAATTCAAAAGGAGTATAATCCTGAACCTGTAAGCTTCAAATTCAAATCCTAGCTCAGCTTGTGCTAACATAAGCAAGTTATCTCCTTTGTTATTGATAAATTTTGGATTTTGGGCAGGAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAATATGATTTCTTGTGTTGCGATGAATCATGTATTATTGTTACTTGCTAATAATGATGTGTTGACTATGCATTATTTAGTATGATAATGTTTTGAAATCAGCTTAAATGAG</genome_strand>
        <mrna_strand>AGTCCCTTAAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCCCAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAATATGATTTCTTGTGTTGCGATGAATCATGTATTATTGTTACTTGCTAATAATGATGTGTTGACTATGCATTATTTAGTATGATAATGTTTTGAAATCAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E407509" ref_strand="+" ref_description="SGN-E407509 [PPI-7-F11]">
      <seq>ccgccgccggcaactgaccagaagaaagaagatggaggaaaatgaacactgatatcacagcatcggcaaagcccgaatatccagttgtagatcgaaacccaccgtttactaaaaccgtcggtaatttcaacacactcgattacctccggctcaccaccatcaccggaatttctgtcaccgtcggatacctctccggaataaagccagggattagagggccatcgatggttaccggaggtttgattgggctaatgggtggtttcatgtatgcttaccagaattcagctggcaggctcatgggtttcttcccaaatgaaggagaggtagccaaagccaagtacaagatttaactgcttccctttaattttctggttcttttggattcccttttgtagtttccccgatatgttatgaaaacagtgggcatttctctcttctcatgagaactttgttgaaagtaatatctttaataatcagtctgtggttaccaacttattacgtttgcttgttttgctatgaatcatgtattattgtgacttgctaataatgatgagttgacaatgcattatttagtaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="105146" stop="103507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104880" g_stop="104683" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104682" i_stop="104191" i_length="492">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104190" g_stop="103807" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="581" r_length="386" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E407509" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104880" e_stop="104683"/>
          <exon e_start="104190" e_stop="103807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCGGTAACTTCTCTATCCTTTACTGTTATCATTCATTCGATTTACTGAAGCTTAAATTGTAAATCTGTTTGGATTTGTCATTTGGATTACACTTTTTATGGAGCCGGGTAGTGCTGAGGGGTTTATCCGATTCTCCTTCGGTGGAAAGTCATATAATTTATACATGGTATATTAGATGTTGAAGCCCTTTAGCTTATTCGTGAGTTTAGTTCTTGGTATTTTGAATCACTTAGTGAAAATTCTTGTTACGTCACTGTAATTATATTTTGGGAAGGAACTAGAAGGTAGGAAGCTGGTTTGACAGAATTCAGTAGTTTTGGTTCAAATCATATATTTATCTTAAGAAATTTATGTAGACATTATTAGTTTGGAATCAGTAATTCAAAAGGAGTATAATCCTGAACCTGTAAGCTTCAAATTCAAATCCTAGCTCAGCTTGTGCTAACATAAGCAAGTTATCTCCTTTGTTATTGATAAATTTTGGATTTTGGGCAGGAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCC-TTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCA-TTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAATATGATTTCTTGTGTTGCGATGAATCATGTATTATTGTTACTTGCTAATAATGATGTGTTGACTATGCATTATTTAGTATGATAA</genome_strand>
        <mrna_strand>CCGCCGCCGGCAACTGACCAGAAGAA-AGAAG--ATGGAGGAAAATGAACACTGATATCACAGCATCGGCAAAGCCCGAATATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGAATTTCTGTCACCGTCGGATACCTCTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTACCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCGATATGTTATGAAAACAGTGGGCATTTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATATCTTTAATAATCAGTCTGTGGTTACCAACTTATTACGTTTGCTTGTTTTGCTATGAATCATGTATTATTGTGACTTGCTAATAATGATGAGTTGACAATGCATTATTTAGTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E422033" ref_strand="-" ref_description="SGN-E422033 [STM-34-A1]">
      <seq>gatacctctccggaataaagccagggattagagggccatcgatggttaccggaggtttgattgggctaatgggtggtttcatgtatgcttaccagaattcagctggcaggctcatgggtttcttcccaaatgaaggagaggtagccaaagccaagtacaagatttaactgcttccctttaattttctggttctttgggattcccttttgtagtttccccgatatgttatgaaaacagtgggcatttctctcttctcatgagaactttgttgaaagtaatatctttaataatcagtctgtggttaccaacttattacgtttgcttgttttgctatgaatcatgtattattgtgacttgctaataatgatgagttgccaatgcagaatttggtaaaaaaaaaaccccttatagagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="104493" stop="103507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104190" g_stop="103814" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="391" r_length="379" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="392" polyA_stop="402"/>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E422033" ref_strand="-">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422033" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="104190" e_stop="103814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCC-TTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCA-TTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAATATGATTTCTTGTGTTGCGATGAATCATGTATTATTGTTACTTGCTAATAATGATGTGTTGACTATGCATTATTTAGT</genome_strand>
        <mrna_strand>GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTACCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTTAATTTTCTGGTTCTTTGGGATTCCCTTTTGTAGTTTCCCCGATATGTTATGAAAACAGTGGGCATTTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATATCTTTAATAATCAGTCTGTGGTTACCAACTTATTACGTTTGCTTGTTTTGCTATGAATCATGTATTATTGTGACTTGCTAATAATGATGAGTTGCCAATGCAGAATTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E406284" ref_strand="+" ref_description="SGN-E406284 [PPI-3-E20]">
      <seq>gccgccggcaacctgaccagaagatgaagaaggaggaaaatgaacacagacatcacagcatcggcaaagcccgaatatccagttgtagatcgaaacccaccgtttactaaaaccgtcggtaatttcaacacactcgattacctccggctcaccaccatcaccggaatttctgtcaccgtcggataccctctccggaataaagccagggattagagggccatcgatggttaccggaggtttgattgggctaatgggtggtttcatgtatgcttaccagaattcagctggcaggctcatgggtttcttcccaaatgaaggagaggtagccaaagccaagtacaagatttaactgcttcccttttaattttctggttcttttggattcccttttgtagtttccccgaaatgttatgaaaacagtgggcatttctctcttctcatgagaactttgttgaaagtaatatctttaataatcagtctgtggttaccaacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="105146" stop="103590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104878" g_stop="104683" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104682" i_stop="104191" i_length="492">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104190" g_stop="103884" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="504" r_length="310" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E406284" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E406284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104878" e_stop="104683"/>
          <exon e_start="104190" e_stop="103884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGCCGGCAAG-TGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATA-CCTCTCCGGTAACTTCTCTATCCTTTACTGTTATCATTCATTCGATTTACTGAAGCTTAAATTGTAAATCTGTTTGGATTTGTCATTTGGATTACACTTTTTATGGAGCCGGGTAGTGCTGAGGGGTTTATCCGATTCTCCTTCGGTGGAAAGTCATATAATTTATACATGGTATATTAGATGTTGAAGCCCTTTAGCTTATTCGTGAGTTTAGTTCTTGGTATTTTGAATCACTTAGTGAAAATTCTTGTTACGTCACTGTAATTATATTTTGGGAAGGAACTAGAAGGTAGGAAGCTGGTTTGACAGAATTCAGTAGTTTTGGTTCAAATCATATATTTATCTTAAGAAATTTATGTAGACATTATTAGTTTGGAATCAGTAATTCAAAAGGAGTATAATCCTGAACCTGTAAGCTTCAAATTCAAATCCTAGCTCAGCTTGTGCTAACATAAGCAAGTTATCTCCTTTGTTATTGATAAATTTTGGATTTTGGGCAGGAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCC--TTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCA-TTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAATATGATTT</genome_strand>
        <mrna_strand>GCCGCCGGCAACCTGACCAGAAGATGA--AG--AAGGAGGAAAATGAACACAGACATCACAGCATCGGCAAAGCCCGAATATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGAATTTCTGTCACCGTCGGATACCCTCTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTACCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCGAAATGTTATGAAAACAGTGGGCATTTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATATCTTTAATAATCAGTCTGTGGTTACCAACTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E421939" ref_strand="+" ref_description="SGN-E421939 [STM-33-H2]">
      <seq>gccgccggcaactgaccagaagaagaagaaggaggaaaatgaacacagatatcacagcatcggcaaagcccgaatatccagttgtagatcgaaacccaccgtttactaaaaccgtcggtaatttcaacacactcgattacctccggctcaccaccatcaccggaatttctgtcaccgtcggatacctctccggaataaagccagggattagagggccatcgatggttaccggagggttgattgggctaatggggggtttcatgtatgcttaccagaattcagctggcaggctcatgggtttcttcccaaatgaaggagagggagccaaagccaaggacaagatttaactgcttcccttttaattttctgggtcttttggattcccttttggagtttccccgaaatgttatgaaaacagtgggcatttctctcttctcatgaaaactttgttgaaagtaatatctttaataatcagtctgtgggtaccaaccttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="105146" stop="103590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104878" g_stop="104683" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104682" i_stop="104191" i_length="492">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104190" g_stop="103886" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="501" r_length="309" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E421939" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104878" e_stop="104683"/>
          <exon e_start="104190" e_stop="103886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCGGTAACTTCTCTATCCTTTACTGTTATCATTCATTCGATTTACTGAAGCTTAAATTGTAAATCTGTTTGGATTTGTCATTTGGATTACACTTTTTATGGAGCCGGGTAGTGCTGAGGGGTTTATCCGATTCTCCTTCGGTGGAAAGTCATATAATTTATACATGGTATATTAGATGTTGAAGCCCTTTAGCTTATTCGTGAGTTTAGTTCTTGGTATTTTGAATCACTTAGTGAAAATTCTTGTTACGTCACTGTAATTATATTTTGGGAAGGAACTAGAAGGTAGGAAGCTGGTTTGACAGAATTCAGTAGTTTTGGTTCAAATCATATATTTATCTTAAGAAATTTATGTAGACATTATTAGTTTGGAATCAGTAATTCAAAAGGAGTATAATCCTGAACCTGTAAGCTTCAAATTCAAATCCTAGCTCAGCTTGTGCTAACATAAGCAAGTTATCTCCTTTGTTATTGATAAATTTTGGATTTTGGGCAGGAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCC--TTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCA-TTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAA-CTTAATATGAT</genome_strand>
        <mrna_strand>GCCGCCGGCAACTGACCAGAAGAAGA--AG--AAGGAGGAAAATGAACACAGATATCACAGCATCGGCAAAGCCCGAATATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGAATTTCTGTCACCGTCGGATACCTCTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGGTTGATTGGGCTAATGGGGGGTTTCATGTATGCTTACCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGGAGCCAAAGCCAAGGACAAGATTTAACTGCTTCCCTTTTAATTTTCTGGGTCTTTTGGATTCCCTTTTGGAGTTTCCCCGAAATGTTATGAAAACAGTGGGCATTTCTCTCTTCTCATGAAAACTTTGTTGAAAGTAATATCTTTAATAATCAGTCTGTGGGTACCAACCTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E714968" ref_strand="+" ref_description="SGN-E714968 [FB12DH01]">
      <seq>atactgatatcacagcatcggcaaagcccgagtatccagttgtagatcgaaacccaccgtttactaaaaccgtcggtaatttcaacacactcgattacctccggctcaccaccatcaccgggatttctgtcaccgtcggatacctctccggaataaagccagggattagagggccatcgatggttaccggaggtttgattgggctaatgggtggtttcatgtatgcttatcagaattcagctggcaggctcatgggtttcttcccaaatgaaggagaggtagccaaagccaagtacaagatttaactgcttcccttaattttctggttcttttggattcccttttgtagtttccccaagatgttattaaaacagtgggcattctctcttctcatgagaactttgttgaaagtaataccattaataatcagtctctggttaccaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="105132" stop="103594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104832" g_stop="104683" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104682" i_stop="104191" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104190" g_stop="103894" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="447" r_length="297" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E714968" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104832" e_stop="104683"/>
          <exon e_start="104190" e_stop="103894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCGGTAACTTCTCTATCCTTTACTGTTATCATTCATTCGATTTACTGAAGCTTAAATTGTAAATCTGTTTGGATTTGTCATTTGGATTACACTTTTTATGGAGCCGGGTAGTGCTGAGGGGTTTATCCGATTCTCCTTCGGTGGAAAGTCATATAATTTATACATGGTATATTAGATGTTGAAGCCCTTTAGCTTATTCGTGAGTTTAGTTCTTGGTATTTTGAATCACTTAGTGAAAATTCTTGTTACGTCACTGTAATTATATTTTGGGAAGGAACTAGAAGGTAGGAAGCTGGTTTGACAGAATTCAGTAGTTTTGGTTCAAATCATATATTTATCTTAAGAAATTTATGTAGACATTATTAGTTTGGAATCAGTAATTCAAAAGGAGTATAATCCTGAACCTGTAAGCTTCAAATTCAAATCCTAGCTCAGCTTGTGCTAACATAAGCAAGTTATCTCCTTTGTTATTGATAAATTTTGGATTTTGGGCAGGAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTT</genome_strand>
        <mrna_strand>ATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E720723" ref_strand="+" ref_description="SGN-E720723 [FC11CF08]">
      <seq>atcgaaacccaccgtttactaataccgtcggtaatttcaacacactcgattacctccggctcaccaccatcaccgggatttctgtcaccgtcggatacctctccggaataaagccagggattaaagggccaacgatggttaccggaggtttgattgggctaatgggtggtttcatgtatgcttatcaaaattcagctggcaggctcatgggtttcttcccaaatgaaggagaggtagccaaagccaagtacaagatttaactgcttcccttaattttctggttcttttggattcccttttgtagtttccccaagatgttattaaaacagtgggcattctctcttctcatgagaactttgttgaaagtaataccattaataaccagtctctggtttaccaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="105087" stop="103596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104787" g_stop="104683" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104682" i_stop="104191" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104190" g_stop="103896" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="401" r_length="296" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E720723" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104787" e_stop="104683"/>
          <exon e_start="104190" e_stop="103896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCGGTAACTTCTCTATCCTTTACTGTTATCATTCATTCGATTTACTGAAGCTTAAATTGTAAATCTGTTTGGATTTGTCATTTGGATTACACTTTTTATGGAGCCGGGTAGTGCTGAGGGGTTTATCCGATTCTCCTTCGGTGGAAAGTCATATAATTTATACATGGTATATTAGATGTTGAAGCCCTTTAGCTTATTCGTGAGTTTAGTTCTTGGTATTTTGAATCACTTAGTGAAAATTCTTGTTACGTCACTGTAATTATATTTTGGGAAGGAACTAGAAGGTAGGAAGCTGGTTTGACAGAATTCAGTAGTTTTGGTTCAAATCATATATTTATCTTAAGAAATTTATGTAGACATTATTAGTTTGGAATCAGTAATTCAAAAGGAGTATAATCCTGAACCTGTAAGCTTCAAATTCAAATCCTAGCTCAGCTTGTGCTAACATAAGCAAGTTATCTCCTTTGTTATTGATAAATTTTGGATTTTGGGCAGGAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGG-TTACCAAC</genome_strand>
        <mrna_strand>ATCGAAACCCACCGTTTACTAATACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAAGCCAGGGATTAAAGGGCCAACGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAAAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAACCAGTCTCTGGTTTACCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E598269" ref_strand="+" ref_description="SGN-E598269 [73939]">
      <seq>atccgccgccggcaagtgaccagtaaaagagcagctaagaaggaagatgaacacagatatcacagcatcggcaaagcccgaatatccagttgttgatcggaatccaccgtttactaaaactgtcggtaatttcaacactctcgattacctccgcctcaccaccatcaccggaatttctgtcaccgtcggatacctctccggaataaagccagggataagagggccatcgatggttaccggaggtttgattgggctaatgggtggtttcatgtatgcttaccagaattcagctggcaggctcatgggtttcttcccaaatgaaagagaggtagccaaagccaagtacaagatttaactgcttccctttaattttctggttcttttgcgattcccttttgtagtttccccgagatgttatgaaaaccagtgggaatttctctcttctcatgagaactttgttggaaagtaatatctttaataatcagtctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="105182" stop="103605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104882" g_stop="104683" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104682" i_stop="104191" i_length="492">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104190" g_stop="103905" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="491" r_length="291" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E598269" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E598269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104882" e_stop="104683"/>
          <exon e_start="104190" e_stop="103905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCGGTAACTTCTCTATCCTTTACTGTTATCATTCATTCGATTTACTGAAGCTTAAATTGTAAATCTGTTTGGATTTGTCATTTGGATTACACTTTTTATGGAGCCGGGTAGTGCTGAGGGGTTTATCCGATTCTCCTTCGGTGGAAAGTCATATAATTTATACATGGTATATTAGATGTTGAAGCCCTTTAGCTTATTCGTGAGTTTAGTTCTTGGTATTTTGAATCACTTAGTGAAAATTCTTGTTACGTCACTGTAATTATATTTTGGGAAGGAACTAGAAGGTAGGAAGCTGGTTTGACAGAATTCAGTAGTTTTGGTTCAAATCATATATTTATCTTAAGAAATTTATGTAGACATTATTAGTTTGGAATCAGTAATTCAAAAGGAGTATAATCCTGAACCTGTAAGCTTCAAATTCAAATCCTAGCTCAGCTTGTGCTAACATAAGCAAGTTATCTCCTTTGTTATTGATAAATTTTGGATTTTGGGCAGGAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCC-TTAATTTTCTGGTTCTTTTG-GATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAA-CAGTGGGCA-TTCTCTCTTCTCATGAGAACTTTGTT-GAAAGTAATACCATTAATAATCAGTCTCTG</genome_strand>
        <mrna_strand>ATCCGCCGCCGGCAAGTGACCAGTAAAAGAGCAGCTAAGAAGGAAGATGAACACAGATATCACAGCATCGGCAAAGCCCGAATATCCAGTTGTTGATCGGAATCCACCGTTTACTAAAACTGTCGGTAATTTCAACACTCTCGATTACCTCCGCCTCACCACCATCACCGGAATTTCTGTCACCGTCGGATACCTCTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAAGCCAGGGATAAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTACCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAAGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTTAATTTTCTGGTTCTTTTGCGATTCCCTTTTGTAGTTTCCCCGAGATGTTATGAAAACCAGTGGGAATTTCTCTCTTCTCATGAGAACTTTGTTGGAAAGTAATATCTTTAATAATCAGTCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E421940" ref_strand="-" ref_description="SGN-E421940 [STM-33-H2]">
      <seq>agaagaagaagaaggaggaaaatgaacacagatatcacagcatcggcaaagcccgaatatccagttgtagatcgaaacccaccgtttactaaaaccgtcggtaatttcaacacactngattacctccggctcaccaccatcaccggaatttctgtcaccgtcggatacctctccggaataaagccagggattagagggccatcgatggttaccggaggtttgattgggctaatgggtggtttcatgtatgcttaccagaattcagctggcaggctcatgggtttcttcccaaatgaaggagaggtagccaaagccaagtacaagatttaactgcttcccttttaattttctggttcttttggattcccttttgtagtttccccgaaatgttatgaaaacagtgggcatttctctcttctcatgagaactttgttgaaagtaatatcttaggattcagtctgtggttcccccccgaagtaaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="105146" stop="103590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104858" g_stop="104683" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104682" i_stop="104191" i_length="492">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104190" g_stop="103905" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="463" r_length="288" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E421940" ref_strand="-">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421940" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="104858" e_stop="104683"/>
          <exon e_start="104190" e_stop="103905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCGGTAACTTCTCTATCCTTTACTGTTATCATTCATTCGATTTACTGAAGCTTAAATTGTAAATCTGTTTGGATTTGTCATTTGGATTACACTTTTTATGGAGCCGGGTAGTGCTGAGGGGTTTATCCGATTCTCCTTCGGTGGAAAGTCATATAATTTATACATGGTATATTAGATGTTGAAGCCCTTTAGCTTATTCGTGAGTTTAGTTCTTGGTATTTTGAATCACTTAGTGAAAATTCTTGTTACGTCACTGTAATTATATTTTGGGAAGGAACTAGAAGGTAGGAAGCTGGTTTGACAGAATTCAGTAGTTTTGGTTCAAATCATATATTTATCTTAAGAAATTTATGTAGACATTATTAGTTTGGAATCAGTAATTCAAAAGGAGTATAATCCTGAACCTGTAAGCTTCAAATTCAAATCCTAGCTCAGCTTGTGCTAACATAAGCAAGTTATCTCCTTTGTTATTGATAAATTTTGGATTTTGGGCAGGAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCC--TTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCA-TTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTG</genome_strand>
        <mrna_strand>AGAAGAAGA-AGAAGGAGGAAAATGAACACAGATATCACAGCATCGGCAAAGCCCGAATATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTNGATTACCTCCGGCTCACCACCATCACCGGAATTTCTGTCACCGTCGGATACCTCTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTACCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCGAAATGTTATGAAAACAGTGGGCATTTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATATC-TTAGGATTCAGTCTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E422032" ref_strand="+" ref_description="SGN-E422032 [STM-34-A1]">
      <seq>ccgccgccggcaactgaccagaagaagaagaaggaggaaaatgaacactgatatcacagcatcggcaaagcccgaatatccagttgtagatcgaaacccaccgtttactaaaaccgtcggtaatttcaacacactcgattacctccggctcaccaccatcaccggaatttctgtcaccgtcggatacctctccggaataaagccagggattacagggccatccatggttaccggagggttgattgggctaatgggtgggttcatgtatgcttaccagaattcaactggcaagctcatggggttcttccccaatggaggagaggtagcccaagcccagtacaaaatttaactgcttccctttaattttccgggtcttttggattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="105146" stop="103702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104880" g_stop="104683" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104682" i_stop="104191" i_length="492">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104190" g_stop="104002" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="384" r_length="190" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E422032" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104880" e_stop="104683"/>
          <exon e_start="104190" e_stop="104002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCGGTAACTTCTCTATCCTTTACTGTTATCATTCATTCGATTTACTGAAGCTTAAATTGTAAATCTGTTTGGATTTGTCATTTGGATTACACTTTTTATGGAGCCGGGTAGTGCTGAGGGGTTTATCCGATTCTCCTTCGGTGGAAAGTCATATAATTTATACATGGTATATTAGATGTTGAAGCCCTTTAGCTTATTCGTGAGTTTAGTTCTTGGTATTTTGAATCACTTAGTGAAAATTCTTGTTACGTCACTGTAATTATATTTTGGGAAGGAACTAGAAGGTAGGAAGCTGGTTTGACAGAATTCAGTAGTTTTGGTTCAAATCATATATTTATCTTAAGAAATTTATGTAGACATTATTAGTTTGGAATCAGTAATTCAAAAGGAGTATAATCCTGAACCTGTAAGCTTCAAATTCAAATCCTAGCTCAGCTTGTGCTAACATAAGCAAGTTATCTCCTTTGTTATTGATAAATTTTGGATTTTGGGCAGGAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCC-TTAATTTTCTGGTTCTTTTGGATTC</genome_strand>
        <mrna_strand>CCGCCGCCGGCAACTGACCAGAAGAAGA--AG--AAGGAGGAAAATGAACACTGATATCACAGCATCGGCAAAGCCCGAATATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGAATTTCTGTCACCGTCGGATACCTCTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAAGCCAGGGATTACAGGGCCATCCATGGTTACCGGAGGGTTGATTGGGCTAATGGGTGGGTTCATGTATGCTTACCAGAATTCAACTGGCAAGCTCATGGGGTTCTTCCCCAATGGAGGAGAGGTAGCCCAAGCCCAGTACAAAATTTAACTGCTTCCCTTTAATTTTCCGGGTCTTTTGGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E575087" ref_strand="+" ref_description="SGN-E575087 [34656]">
      <seq>cttggagtattccgccgccggcaagtgaccagtaaaagagcagctaagaaggaagatgaacaccgatatcacagcatcgtcaaagcccgaatatccagttgttgatcggaatccaccgtttactaaaactgtcggtaatttcaacactctcgattacctccgcctcaccaccatcaccggaatttctgtcaccgtcggatacctctccggaataaagccagggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="105188" stop="104379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104890" g_stop="104683" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E575087" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>208</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E575087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104890" e_stop="104683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGGAGTA-TCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG</genome_strand>
        <mrna_strand>CTTGGAGTATTCCGCCGCCGGCAAGTGACCAGTAAAAGAGCAGCTAAGAAGGAAGATGAACACCGATATCACAGCATCGTCAAAGCCCGAATATCCAGTTGTTGATCGGAATCCACCGTTTACTAAAACTGTCGGTAATTTCAACACTCTCGATTACCTCCGCCTCACCACCATCACCGGAATTTCTGTCACCGTCGGATACCTCTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E370925" ref_strand="+" ref_description="SGN-E370925 [TUS-27-J11]">
      <seq>ggaatgctaaaactcctcggcttgaaaggaagaagtgaaccatatgtcactgaggatgaattgaagttgatgctgcgtggggcggagttaagtggcgcaattgaggaggaagagcaggatatgattgaaaatgtgttggagattaaagacactcatgtcacggaggtaatgacacctcttgttgatgttgttgcaatcgatgccagtgcaacgttagttgatttccatagtttgtgggtgacacatcagtactccagggtgcccgtttttgagcaacgcatagataatattgttggcattgcatatgccatggatctcctagattatgtacaaaagggagaactgctggaaagttctattgtgggagacattgcacatagacctgcatactttgttcccgattctatgtcagtgtggaaccttcttagagagttccgcatcagaaaggtacacatggctgttgctcttaatgaatatggaggaaccataggaattgtaacccttgaagatgtggtcgaggaaattgttggcgaaatctttgacgaaaatgattcataagaggaaatccacaaaatgactggctatattgtcatgcgggctgaaggaatatacgatgttgatgcacatacctccattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="125961" stop="120941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125661" g_stop="125627" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125626" i_stop="124536" i_length="1091">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124535" g_stop="124454" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="117" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124453" i_stop="122708" i_length="1746">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122707" g_stop="122568" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="257" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122567" i_stop="122481" i_length="87">
            <donor d_prob="0.575" d_score="1.00"/>
            <acceptor a_prob="0.656" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122480" g_stop="122402" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="336" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122401" i_stop="122294" i_length="108">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122293" g_stop="122230" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="400" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122229" i_stop="121761" i_length="469">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="121760" g_stop="121669" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="492" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="121668" i_stop="121535" i_length="134">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="121534" g_stop="121469" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="558" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="121468" i_stop="121321" i_length="148">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="121320" g_stop="121241" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="637" r_length="79" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E370925" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125661" e_stop="125627"/>
          <exon e_start="124535" e_stop="124454"/>
          <exon e_start="122707" e_stop="122568"/>
          <exon e_start="122480" e_stop="122402"/>
          <exon e_start="122293" e_stop="122230"/>
          <exon e_start="121760" e_stop="121669"/>
          <exon e_start="121534" e_stop="121469"/>
          <exon e_start="121320" e_stop="121241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATGCTAAAACTCCTCGGCTTGAAAGGAAGAAGGTAGGGTGATCATAAATCAAGTCTTGCTATTTTTCATGAGCTCTGCCTCACAGTGTTAATCTTTTTTACTATTCTTTCAGTTGGAATATGTATATCATAATTTATATTTTTGTGAGCATATTTACGAAACACACTCTTATAATATTTCTAATCGATCATGTAATTCTGAATATGGCAAGTTCACATGCATGTCTTATTTGAAAGGCTATCTACATTATACATGCTTATCCTTAGAAATCATTGTGAGCAATCTGCTGTTTTTTTTTTAATTACATAAATGCATTATTGTCAAAAGATACATGAAAAGCATAAGGTTTTCTCTCCACATAATTTAGATTTCCAAGGGCCCGTTTAGACATGATTTGATGATTTGAAATTGAAATTTTGCTTGGACATGTCATTTGGGTTTCTTAAGTTGTATTTTTTCTCATAAACATAACGAGAACCCAACAATTTGTGGAAATTATCTTGGGTAATCCTCTCCCCATGAGCTAACTTTAGGGGTTGAGTTAGACCCAAAATTCATTTCTTATCGTGAATTAGAGTCGATGTGAGCCCCCTGTTAGTTTTCACGCCCATGGACCAGATAGAGTCGGGCAGATGGGATGGGGGTGGGGGTGATGGAATGAATCCCACATCAAAGGTGAACGAATTGAATTGGGGTCTCATATGGTCAGTGCAATCTTCCTCTTTGAGCAGCTTTTGGGTTGAGTAAAATAAACTGAAATCCTACTTTTTCGAGCCCCAAATCCTATGGCCAAACAACTATTAAGCGTTCTCATCCATAATAACTTGTAGAAAAGTTAAAACTATGTTTATAAATACAATATGTGAAAAGTCTTGGGGTCTCACATTGGTTGAGGGTATGGGCAATAGTCTCAGTCCAAATATTTTATTTTGATAAAATATATATTATTAGAAAAGGAACCAGTACTCTTGGTACTGAAATTACAAACAAGCTGACAGAAGTTAGTTGGATCCTCCTTCACTTTTGTCTCTAACCATTCTAAATCCAGCATTGATTTTACATCATTCTCATTTGCCAAAACTTTAAGTTGCGTCACTAAATTTATATTCATTTTGGTATCTAGTGAACCATATGTCACTGAGGATGAATTGAAGTTGATGCTGCGTGGGGCGGAGTTAAGTGGCGCAATTGAGGAGGAAGAGCAGGTGAGTTCATGTGTTTTCTGGGTTTCTGTTTTTTATGCTTGAACCTCAACTGTTACCAAATATGAACCAGTGAAGCACATGCATATTCTAATCATACATAAGCTTGTCTAGTTCACATAGAATTTGTTGTCCATTAGAATAGCCTTCATGTATGTGACCATTGTACCAAATGCAGCATCTTGAGATGTGTTTATCATGTCCATTTGAATGAGCACTATTTTAGCACTCTCTGTGTTTTGTTCTTATCTTGCATGTTATTATTGGAGATTCATGGTGACATAGTTGGAAGTCGATGGAGCCAGTGTTATCAAAGGCGAAAAATGCAAAAAAACAAAACTAAGGTCTATTGGTGCTTTGAGCACAAATAAAGCATGGACCTTGAAGAAGAAAGAAGTGAGTGGAAAAAAATACAAATATGTTTGCATGGTCCAAGACTAATAATTGTAAGCATGAATAACAAATCTAAGAACAAAGAAATTGAAAAATGTTTACGACGAAGTGAAATATCACTTGTGTAGTATCAGCTCTTCAGGGTTACACGAATTGTCAAGGAGAAGTGCCTTAGATCCTTGATGTTGAGACTGAAGCACAGGTAAAGCGTGGCTGACCGCACTTTAGGCGCGCTTTGACAACACTGAATGTAGCTACATACAAGTGTATTATTTTACTCTCTTTAAAAGACAACAAAATATATGACCTAAACATTAATGAGAGAGTTATGCTAATGATTTTTTCTTGGGAAGAACTGTCAAACAAACATAACATCCAAAACATGAAGAAATGATTGACAAAAAATTTCACCCTGCTTCTTCTATGCACCACCTTACTCATGCCCTCCAATGTTACATCTGCTGTATAATTGGTGCTGAAGCCAGTGCTTTGTGCCTTGGCTCGTCTTCTCTGGAAGAGGAAGGCTTTGTTCGATTTTGCCTTGACATGCATCTTCAGCCTACCACATTGTTTCCCTTGGCCAAAAAAATGACTTTGTGGTTTAAGACACAGCTGCCACCTTTTACAGGAATTTAGCATGCCATCTTTGATGGATTTTTTTTGGAGCTTAAAAACAGTTGGATTAAGCAGTTTTGGTTTAAATAAGCCAAAAATGCTTAAAAGTTGATTTGACCAGCTTTGAATATATTTCTCTGATTTTTCTTACTTTGTTGATTTCCATGCAGAAGTAGGTATCTTTTGTAACTTACTCGTGCGTTGGTTTGCACTTGTAGTATTTTGTTGTACTATCAGTTTTATCATCTTTCCCTTTACAAATTAATTCTCATTCTTTTAGACACAACTATGGGAACACAATCTATCTCAAATAAATAATACGTTGATTCCTGCATAACTTATGCAAGTATTATTTATGAGGAAAACAAAAAGGAGCAACCAAATGTTGATTTTATGACTTTCTGTGAGACTAAATCTCCTCAAATCTTAACCAAACACTATCATCTTTTGCTTGCTTTTATGGGGAGATAATATCTCCTAAAATAAAGCCTGACCCATTAATGTCTGTCCTCTTGCAGGACATGGCTGAAAATGTGTTGTCTTGCAAGTGACATGAGTTCTGCTGTAATTTTTTTAATTTTATTTTGGTTTGGTAATGACAGTGACATGAGTTGTGCTTAAATGGAGACGTGAGGATTCATATAGCCAATCCCAACTTGTTTGGGACTGGGGCAGAGCAATTGATATATATCTCCTAAAACTTAATTCAGATGAACCTTCTATGGCTCTGTTTTCTTGCAGGATATGATTGAAAATGTGTTGGAGATTAAAGACACTCATGTCAGGGAGGTAATGACACCTCTTGTTGATGTTGTTGCAATCGATGCCAGTGCAACGTTAGTTGATTTCCATAGTTTGTGGGTGACACATCAGTACTCCAGGTCTGATAGACTTTTAATTGCTTGTTTTTGCATAGAGAAGAAGTTTCCTTCAAAAGGTGCTAAAAGAGTTTGGCTATGAATTTTCAGGGTGCCCGTTTTTGAGCAACGTATAGATAATATTGTTGGCATTGCATATGCCATGGATCTCCTAGATTATGTACAAAAGGTTTAGCATCCACAACTTCAGCCAGTCTCTTTCAAAATTATCGTGGTGTCATTTCTAATTGAACACATAAATTTCATAGCATGCTGAAAATTCTCTTTAATTTTGAAGGGAGAACTGCTGGAAAGTTCTATTGTGGGAGACATTGCACATAAACCTGCATACTTTGTTCCCGGTAATTTACATTTCTTCCTGATGTTGACTGATGTATAAATAAGAAATTGTAGTTCTATGTCACCTAAACCATGGATCTGCAAAGTCAATAATTTAAATTACTGATATAAGTTGCTGATCAGTAGGTATTTTAAGTACCACTTCATATCCTTATCAGAGACGTCATGTACTGTCTACCATAACTAAATCAACAAATAGATGTACATACTTTTTAGTATAATTAACAATACCGAAGCCACTTTGCTGACTGTAGTACTGCCTTTCAGATTCTCACACTGTTGAGATGTGATTTATTCCTATTTAACCAGCTGCCATCGGCGGGAATCATTCTTATTTCCTAGAATCTGTCTCCCTTAAAACATTATGATTTTATGCTTTATGCTTATAAAATGCATAAACATTGCTCGTGTTTTCTTTCCACTCACAATAGTACCCAAGGAGGCAAACAAAGTAATCTTGTAACAATGCAGATTCTATGTCAGTGTGGAACCTTCTTAGAGAGTTCCGCATCAGAAAGGTACACATGGCTGTTGTTCTTAATGAATATGGAGGAACCATTGGAGTAAGTTTTCTCTCTCATCGTTTCTGTTTCTTGGTTGTAGTGCTTTGTTAATTCCATCAAAATTTCTTATCCACTGTGTGTATCTATCATTTAATTATCTATAACAATGTCTTCACATTATCTCTATGAAACAGATTGTAACCCTTGAAGATGTGGTCGAGGAAATTGTTGGCGAAATCTTTGACGAAAATGATTCAAAAGTAAGACTTATGAGTCCCTCTTTCCACTTCTCTGAACAGCTAGTTATTTGTAGGTTCATAGTTACCTCTGATGGATACCCCTCTTCAGTTATAGAATACATAGATATTTAGTATGTGGAAGTATATGTATTTTCTTGTTGCGTGACAGGAGGAAATCCAAGAAAAAAACTGGCTATATTGTCATGCGGGCTGAGGGAATATACGATGTTGATGCAAATACCTCCATTG</genome_strand>
        <mrna_strand>GGAATGCTAAAACTCCTCGGCTTGAAAGGAAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACCATATGTCACTGAGGATGAATTGAAGTTGATGCTGCGTGGGGCGGAGTTAAGTGGCGCAATTGAGGAGGAAGAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGATTGAAAATGTGTTGGAGATTAAAGACACTCATGTCACGGAGGTAATGACACCTCTTGTTGATGTTGTTGCAATCGATGCCAGTGCAACGTTAGTTGATTTCCATAGTTTGTGGGTGACACATCAGTACTCCAG.......................................................................................GGTGCCCGTTTTTGAGCAACGCATAGATAATATTGTTGGCATTGCATATGCCATGGATCTCCTAGATTATGTACAAAAG............................................................................................................GGAGAACTGCTGGAAAGTTCTATTGTGGGAGACATTGCACATAGACCTGCATACTTTGTTCCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTATGTCAGTGTGGAACCTTCTTAGAGAGTTCCGCATCAGAAAGGTACACATGGCTGTTGCTCTTAATGAATATGGAGGAACCATAGGA......................................................................................................................................ATTGTAACCCTTGAAGATGTGGTCGAGGAAATTGTTGGCGAAATCTTTGACGAAAATGATTCATAA....................................................................................................................................................GAGGAAATCC-ACAAAATGACTGGCTATATTGTCATGCGGGCTGAAGGAATATACGATGTTGATGCACATACCTCCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E271173" ref_strand="+" ref_description="SGN-E271173 [cLEM-5-C13]">
      <seq>ggaatgctaaaactcctcggcttgaaaggaagaagtgaaccatatgtcactgaggatgaattgaagttgatgctgcgtggggcggagttaagtggcgcaattgaggaggaagagcaggatatgattgaaaatgtgttggagattaaagacactcatgtcagggaggtaatgacacctcttgttgatgttgttgcaatcgatgccagtgcaacgttagttgatttccatagtttgtgggtgacacatcagtactccagggtgcccgtttttgagcaacgtatagataatattgttggcattgcatatgccatggatctcctagattatgtacaaaagggagaactgctggaaagttctattgtgggagacattgcacataaacctgcatactttgttcccgattctatgtcagtgtggaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="125961" stop="121440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125661" g_stop="125627" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125626" i_stop="124536" i_length="1091">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124535" g_stop="124454" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="117" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124453" i_stop="122708" i_length="1746">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122707" g_stop="122568" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="257" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122567" i_stop="122481" i_length="87">
            <donor d_prob="0.575" d_score="1.00"/>
            <acceptor a_prob="0.656" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122480" g_stop="122402" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="336" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122401" i_stop="122294" i_length="108">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122293" g_stop="122230" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="400" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122229" i_stop="121761" i_length="469">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="121760" g_stop="121740" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="421" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E271173" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125661" e_stop="125627"/>
          <exon e_start="124535" e_stop="124454"/>
          <exon e_start="122707" e_stop="122568"/>
          <exon e_start="122480" e_stop="122402"/>
          <exon e_start="122293" e_stop="122230"/>
          <exon e_start="121760" e_stop="121740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATGCTAAAACTCCTCGGCTTGAAAGGAAGAAGGTAGGGTGATCATAAATCAAGTCTTGCTATTTTTCATGAGCTCTGCCTCACAGTGTTAATCTTTTTTACTATTCTTTCAGTTGGAATATGTATATCATAATTTATATTTTTGTGAGCATATTTACGAAACACACTCTTATAATATTTCTAATCGATCATGTAATTCTGAATATGGCAAGTTCACATGCATGTCTTATTTGAAAGGCTATCTACATTATACATGCTTATCCTTAGAAATCATTGTGAGCAATCTGCTGTTTTTTTTTTAATTACATAAATGCATTATTGTCAAAAGATACATGAAAAGCATAAGGTTTTCTCTCCACATAATTTAGATTTCCAAGGGCCCGTTTAGACATGATTTGATGATTTGAAATTGAAATTTTGCTTGGACATGTCATTTGGGTTTCTTAAGTTGTATTTTTTCTCATAAACATAACGAGAACCCAACAATTTGTGGAAATTATCTTGGGTAATCCTCTCCCCATGAGCTAACTTTAGGGGTTGAGTTAGACCCAAAATTCATTTCTTATCGTGAATTAGAGTCGATGTGAGCCCCCTGTTAGTTTTCACGCCCATGGACCAGATAGAGTCGGGCAGATGGGATGGGGGTGGGGGTGATGGAATGAATCCCACATCAAAGGTGAACGAATTGAATTGGGGTCTCATATGGTCAGTGCAATCTTCCTCTTTGAGCAGCTTTTGGGTTGAGTAAAATAAACTGAAATCCTACTTTTTCGAGCCCCAAATCCTATGGCCAAACAACTATTAAGCGTTCTCATCCATAATAACTTGTAGAAAAGTTAAAACTATGTTTATAAATACAATATGTGAAAAGTCTTGGGGTCTCACATTGGTTGAGGGTATGGGCAATAGTCTCAGTCCAAATATTTTATTTTGATAAAATATATATTATTAGAAAAGGAACCAGTACTCTTGGTACTGAAATTACAAACAAGCTGACAGAAGTTAGTTGGATCCTCCTTCACTTTTGTCTCTAACCATTCTAAATCCAGCATTGATTTTACATCATTCTCATTTGCCAAAACTTTAAGTTGCGTCACTAAATTTATATTCATTTTGGTATCTAGTGAACCATATGTCACTGAGGATGAATTGAAGTTGATGCTGCGTGGGGCGGAGTTAAGTGGCGCAATTGAGGAGGAAGAGCAGGTGAGTTCATGTGTTTTCTGGGTTTCTGTTTTTTATGCTTGAACCTCAACTGTTACCAAATATGAACCAGTGAAGCACATGCATATTCTAATCATACATAAGCTTGTCTAGTTCACATAGAATTTGTTGTCCATTAGAATAGCCTTCATGTATGTGACCATTGTACCAAATGCAGCATCTTGAGATGTGTTTATCATGTCCATTTGAATGAGCACTATTTTAGCACTCTCTGTGTTTTGTTCTTATCTTGCATGTTATTATTGGAGATTCATGGTGACATAGTTGGAAGTCGATGGAGCCAGTGTTATCAAAGGCGAAAAATGCAAAAAAACAAAACTAAGGTCTATTGGTGCTTTGAGCACAAATAAAGCATGGACCTTGAAGAAGAAAGAAGTGAGTGGAAAAAAATACAAATATGTTTGCATGGTCCAAGACTAATAATTGTAAGCATGAATAACAAATCTAAGAACAAAGAAATTGAAAAATGTTTACGACGAAGTGAAATATCACTTGTGTAGTATCAGCTCTTCAGGGTTACACGAATTGTCAAGGAGAAGTGCCTTAGATCCTTGATGTTGAGACTGAAGCACAGGTAAAGCGTGGCTGACCGCACTTTAGGCGCGCTTTGACAACACTGAATGTAGCTACATACAAGTGTATTATTTTACTCTCTTTAAAAGACAACAAAATATATGACCTAAACATTAATGAGAGAGTTATGCTAATGATTTTTTCTTGGGAAGAACTGTCAAACAAACATAACATCCAAAACATGAAGAAATGATTGACAAAAAATTTCACCCTGCTTCTTCTATGCACCACCTTACTCATGCCCTCCAATGTTACATCTGCTGTATAATTGGTGCTGAAGCCAGTGCTTTGTGCCTTGGCTCGTCTTCTCTGGAAGAGGAAGGCTTTGTTCGATTTTGCCTTGACATGCATCTTCAGCCTACCACATTGTTTCCCTTGGCCAAAAAAATGACTTTGTGGTTTAAGACACAGCTGCCACCTTTTACAGGAATTTAGCATGCCATCTTTGATGGATTTTTTTTGGAGCTTAAAAACAGTTGGATTAAGCAGTTTTGGTTTAAATAAGCCAAAAATGCTTAAAAGTTGATTTGACCAGCTTTGAATATATTTCTCTGATTTTTCTTACTTTGTTGATTTCCATGCAGAAGTAGGTATCTTTTGTAACTTACTCGTGCGTTGGTTTGCACTTGTAGTATTTTGTTGTACTATCAGTTTTATCATCTTTCCCTTTACAAATTAATTCTCATTCTTTTAGACACAACTATGGGAACACAATCTATCTCAAATAAATAATACGTTGATTCCTGCATAACTTATGCAAGTATTATTTATGAGGAAAACAAAAAGGAGCAACCAAATGTTGATTTTATGACTTTCTGTGAGACTAAATCTCCTCAAATCTTAACCAAACACTATCATCTTTTGCTTGCTTTTATGGGGAGATAATATCTCCTAAAATAAAGCCTGACCCATTAATGTCTGTCCTCTTGCAGGACATGGCTGAAAATGTGTTGTCTTGCAAGTGACATGAGTTCTGCTGTAATTTTTTTAATTTTATTTTGGTTTGGTAATGACAGTGACATGAGTTGTGCTTAAATGGAGACGTGAGGATTCATATAGCCAATCCCAACTTGTTTGGGACTGGGGCAGAGCAATTGATATATATCTCCTAAAACTTAATTCAGATGAACCTTCTATGGCTCTGTTTTCTTGCAGGATATGATTGAAAATGTGTTGGAGATTAAAGACACTCATGTCAGGGAGGTAATGACACCTCTTGTTGATGTTGTTGCAATCGATGCCAGTGCAACGTTAGTTGATTTCCATAGTTTGTGGGTGACACATCAGTACTCCAGGTCTGATAGACTTTTAATTGCTTGTTTTTGCATAGAGAAGAAGTTTCCTTCAAAAGGTGCTAAAAGAGTTTGGCTATGAATTTTCAGGGTGCCCGTTTTTGAGCAACGTATAGATAATATTGTTGGCATTGCATATGCCATGGATCTCCTAGATTATGTACAAAAGGTTTAGCATCCACAACTTCAGCCAGTCTCTTTCAAAATTATCGTGGTGTCATTTCTAATTGAACACATAAATTTCATAGCATGCTGAAAATTCTCTTTAATTTTGAAGGGAGAACTGCTGGAAAGTTCTATTGTGGGAGACATTGCACATAAACCTGCATACTTTGTTCCCGGTAATTTACATTTCTTCCTGATGTTGACTGATGTATAAATAAGAAATTGTAGTTCTATGTCACCTAAACCATGGATCTGCAAAGTCAATAATTTAAATTACTGATATAAGTTGCTGATCAGTAGGTATTTTAAGTACCACTTCATATCCTTATCAGAGACGTCATGTACTGTCTACCATAACTAAATCAACAAATAGATGTACATACTTTTTAGTATAATTAACAATACCGAAGCCACTTTGCTGACTGTAGTACTGCCTTTCAGATTCTCACACTGTTGAGATGTGATTTATTCCTATTTAACCAGCTGCCATCGGCGGGAATCATTCTTATTTCCTAGAATCTGTCTCCCTTAAAACATTATGATTTTATGCTTTATGCTTATAAAATGCATAAACATTGCTCGTGTTTTCTTTCCACTCACAATAGTACCCAAGGAGGCAAACAAAGTAATCTTGTAACAATGCAGATTCTATGTCAGTGTGGAACC</genome_strand>
        <mrna_strand>GGAATGCTAAAACTCCTCGGCTTGAAAGGAAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACCATATGTCACTGAGGATGAATTGAAGTTGATGCTGCGTGGGGCGGAGTTAAGTGGCGCAATTGAGGAGGAAGAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGATTGAAAATGTGTTGGAGATTAAAGACACTCATGTCAGGGAGGTAATGACACCTCTTGTTGATGTTGTTGCAATCGATGCCAGTGCAACGTTAGTTGATTTCCATAGTTTGTGGGTGACACATCAGTACTCCAG.......................................................................................GGTGCCCGTTTTTGAGCAACGTATAGATAATATTGTTGGCATTGCATATGCCATGGATCTCCTAGATTATGTACAAAAG............................................................................................................GGAGAACTGCTGGAAAGTTCTATTGTGGGAGACATTGCACATAAACCTGCATACTTTGTTCCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTATGTCAGTGTGGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E455174" ref_strand="+" ref_description="SGN-E455174 [cSTS-25-F9]">
      <seq>gaaaaggtgaaaaaattgaggcaggtgaagcttaaacgcaatgagctctggcatctgctcaatttcatctcttcaaactctacaaaatcttcaattctccataaacccagaaatctttttgctttgtttttgtatttgagctgtttaattttgcttaatttccatggatgctgcagtttttaatccatcttcattcattactacttgtaataaacgttcgtatccaggcgtttatactcgtcaattaggaatacccattaagctatctgctaataaccttcgttactcatgtggggttgcgtcaaattttgttcttccttacaattcgaggtgtaattttaggaatgggatttgtttatctgttaaaggaggtaaaggggagtttcagaatgctgaagattcttctgggtcgtgcttgaaaataccatttatgcatttcctgctgaaaaaaggggtgattttggttggggtgatatgtggggttttcataattgggtgcagaagagtgtttgctgttgaaggggttttaaatgggggatatggtgttttagagcagggtttggttttgttgaggagttattggcctacggttttgttggttctcaggatgtttaaagaacaaggtttgattcttgcggcgcttcttagtctttctgcatttttttcaatggctgagacatcaataactacgctttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="128863" stop="127584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128564" g_stop="127884" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E455174" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128564" e_stop="127884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGTGAAAAAACTGAGGCAGGTGAAGGCTTAAACGCAATGAGCTCTGCCATCTGCTCAATTTCA-----T----CTCTACAAAATCTTCAATTCTTCAAAAACCCAAAAATCTTTTTGCTTTGTTTTGGTATTTGAGCTGTTTAATTTTGCTAAATTTCCATGGATGCTGCAGTTTTTAATCCATCTTCATTCATTACTACTTGTAATAAACGTTCGTATCCAGGCGTGTATACTCGTCAATTAGGAAAACCCATTAAGCTATCTGCTAATAACCTTCGTTACTCATGTGGGGTTGCGTCAAATTTTGTTCTTCCTTACAATTCGAGGTGTAATTTTAGGAATGGGATTTGTTTATCTGTTAAAGGGGGTAAAGGGGAGTTTCAGAATGCTGAAGA------T---TCATGCTTGAAAATACCATTTATGCATTTCCTGCTGAAAAAAGGGGTGATTTTGGTAGGGGTGATATGTGGGTTTTTTTTAATTGGGTGCAGAAGGGTGTTTGCTGTTGAAGGGGTTTTGAATGGAGGATATGGTGTTTTAGAGCAGGGTTTGGTTTTGTTGAGGAGTTATTGGCCTACGGTATTGTTGGTTCTCAGGATGTTTAAAGAACAAGGTTTGATTCTTGCGGCGCTTCTTAGTCTTTCTGCATTTTTTTCGATGGCTGAGACATCAATAACTACGCTTTGGC</genome_strand>
        <mrna_strand>GAAAAGGTGAAAAAATTGAGGCAGGTGAA-GCTTAAACGCAATGAGCTCTGGCATCTGCTCAATTTCATCTCTTCAAACTCTACAAAATCTTCAATTCTCCATAAACCCAGAAATCTTTTTGCTTTGTTTTTGTATTTGAGCTGTTTAATTTTGCTTAATTTCCATGGATGCTGCAGTTTTTAATCCATCTTCATTCATTACTACTTGTAATAAACGTTCGTATCCAGGCGTTTATACTCGTCAATTAGGAATACCCATTAAGCTATCTGCTAATAACCTTCGTTACTCATGTGGGGTTGCGTCAAATTTTGTTCTTCCTTACAATTCGAGGTGTAATTTTAGGAATGGGATTTGTTTATCTGTTAAAGGAGGTAAAGGGGAGTTTCAGAATGCTGAAGATTCTTCTGGGTCGTGCTTGAAAATACCATTTATGCATTTCCTGCTGAAAAAAGGGGTGATTTTGGTTGGGGTGATATGTGGGGTTTTCATAATTGGGTGCAGAAGAGTGTTTGCTGTTGAAGGGGTTTTAAATGGGGGATATGGTGTTTTAGAGCAGGGTTTGGTTTTGTTGAGGAGTTATTGGCCTACGGTTTTGTTGGTTCTCAGGATGTTTAAAGAACAAGGTTTGATTCTTGCGGCGCTTCTTAGTCTTTCTGCATTTTTTTCAATGGCTGAGACATCAATAACTACGCTTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E378991" ref_strand="+" ref_description="SGN-E378991 [TUS-1-H10]">
      <seq>aaactctgaggctgcacttcactgattccactgttataaccatcgctcataggataacatctgttcttgatagtgacatggtcctactattagaacacgggctgattgctgaatatgacactccaggcaagttattagagaacgaatcctcgttgtttgccaagctcgtggctgagtatagtatgagatcaaattcaagttttgagaatgcctcagacacatgaatctttcattgaccacgttatacgatgatgatgatgaaaactagtacacatgaatctcagacactaacactcttttgagtttccatccgtggacgatagagcttgaacaagaacccgcgaaatgcagctcattgcatgtgacttgagggaaactgcaacaatcttatggcagtgaaagaagttcatctatttgtgcaatattgatagtgaaatggcatctgttttctttagactttttgatgtgaaaaaatgttttaagtatttgtttaccaataatttgaatgtatgttgagtcaattgattagttagttaagagtgcacggattttgttcctttattgtaaagtagtanaactttttgtattgagttggaagtgaacttacnagtgtttngatttttctctacnagcaaaactgaaatactttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="130129" stop="128797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129829" g_stop="129731" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129730" i_stop="129649" i_length="82">
            <donor d_prob="0.582" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129648" g_stop="129097" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="651" r_length="552" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E378991" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129829" e_stop="129731"/>
          <exon e_start="129648" e_stop="129097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTGAGGCTGCACTTCACTGATTCCACTGTTATAACCATCGCTCATAGGATAACATCTGTTCTTGATAGTGACATGGTCCTACTATTAGAACACGGTATGAATCAACATTTGCATTTTTTGAACAAACGGAGGTGGAAATTCTTGGTATTTACTTTCTTTTGTTTGCTATACTACAGGGCTGATTGCTGAATATGACACTCCAGGCAAGTTATTAGAGAACGAATCCTCGTTGTTTGCCAAGCTCGTGGCTGAGTATAGTATGAGATCAAATTCAAGTTTTGAGAATGCCTCAGACACATGAATCTTTCATTGACCACGTTATACGATGATGATGATGAAAACTAGTACACATGAATCTCAGACACTAACACTCTTTTGAGTTTCCATCCGTGGACGATAGAGCTTGAACAAGAACCCGCGAAATGCAGCTCATTGCATGTGACTTGAGGGAAACTGCAACAATCTTATGGCAGTGAAAGAAGTTCATCTATTTGTGCAATATTGATAGTGAAATGGCATCTGTTTTCTTTAGACTTTTTGATGTGAAAAAATGTTTTAAGTATTTGTTTACCAATAATTTGAATGTATGTTGAGTCAATTGATTAGTTAGTTAAGAGTGCACGGATTTTGTTCC-TTATTGTAAAAGTAGTAAAACTTTTTGTATTGAGTTGGAAGTGAACTTACAAGTGTTTGAATTTTTCTCTACAAGCAAAACTGAAATACTTTTA</genome_strand>
        <mrna_strand>AAACTCTGAGGCTGCACTTCACTGATTCCACTGTTATAACCATCGCTCATAGGATAACATCTGTTCTTGATAGTGACATGGTCCTACTATTAGAACACG..................................................................................GGCTGATTGCTGAATATGACACTCCAGGCAAGTTATTAGAGAACGAATCCTCGTTGTTTGCCAAGCTCGTGGCTGAGTATAGTATGAGATCAAATTCAAGTTTTGAGAATGCCTCAGACACATGAATCTTTCATTGACCACGTTATACGATGATGATGATGAAAACTAGTACACATGAATCTCAGACACTAACACTCTTTTGAGTTTCCATCCGTGGACGATAGAGCTTGAACAAGAACCCGCGAAATGCAGCTCATTGCATGTGACTTGAGGGAAACTGCAACAATCTTATGGCAGTGAAAGAAGTTCATCTATTTGTGCAATATTGATAGTGAAATGGCATCTGTTTTCTTTAGACTTTTTGATGTGAAAAAATGTTTTAAGTATTTGTTTACCAATAATTTGAATGTATGTTGAGTCAATTGATTAGTTAGTTAAGAGTGCACGGATTTTGTTCCTTTATTGT-AAAGTAGTANAACTTTTTGTATTGAGTTGGAAGTGAACTTACNAGTGTTTNGATTTTTCTCTACNAGCAAAACTGAAATACTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E379181" ref_strand="-" ref_description="SGN-E379181 [TUS-1-H10]">
      <seq>caaactctgaggctgcacttcactgattccactgttataaccatcgctcataggataacatctgttcttgatagtgacatggtcctactattagaacacgggctgattgctgaatatgacactccaggcaagttattagagaacgaatcctcgttgtttgccaagctcgtggctgagtatagtatgagatcaaattcaagttttgagaatgcctcagacacatgaatctttcattgaccacgttatacgatgatgatgatgaaaactagtacacatgaatctcagacactaacactcttttgagtttccatccgtggacgatagagcttgaacaagaacccgcgaaatgcagctcattgcatgtgacttgagggaaactgcaacaatcttatggcagtgaaagaagttcatctatttgtgcaatattgatagtgaaatggcatctgttttctttagactttttgatgtgaaaaaatgttttaagtatttgtttaccaataatttgaatgtatgttgagtcaattgattagttagttaagagtgcacggattttgttccttattgtaaaagtagtaaaactgattgtattgagttggaagtgtccttacaantattagaattttctctacaagcaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="130130" stop="128810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129830" g_stop="129731" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129730" i_stop="129649" i_length="82">
            <donor d_prob="0.582" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129648" g_stop="129110" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="638" r_length="538" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E379181" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379181" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="129830" e_stop="129731"/>
          <exon e_start="129648" e_stop="129110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTCTGAGGCTGCACTTCACTGATTCCACTGTTATAACCATCGCTCATAGGATAACATCTGTTCTTGATAGTGACATGGTCCTACTATTAGAACACGGTATGAATCAACATTTGCATTTTTTGAACAAACGGAGGTGGAAATTCTTGGTATTTACTTTCTTTTGTTTGCTATACTACAGGGCTGATTGCTGAATATGACACTCCAGGCAAGTTATTAGAGAACGAATCCTCGTTGTTTGCCAAGCTCGTGGCTGAGTATAGTATGAGATCAAATTCAAGTTTTGAGAATGCCTCAGACACATGAATCTTTCATTGACCACGTTATACGATGATGATGATGAAAACTAGTACACATGAATCTCAGACACTAACACTCTTTTGAGTTTCCATCCGTGGACGATAGAGCTTGAACAAGAACCCGCGAAATGCAGCTCATTGCATGTGACTTGAGGGAAACTGCAACAATCTTATGGCAGTGAAAGAAGTTCATCTATTTGTGCAATATTGATAGTGAAATGGCATCTGTTTTCTTTAGACTTTTTGATGTGAAAAAATGTTTTAAGTATTTGTTTACCAATAATTTGAATGTATGTTGAGTCAATTGATTAGTTAGTTAAGAGTGCACGGATTTTGTTCCTTATTGTAAAAGTAGTAAAACTTTTTGTATTGAGTTGGAAGTGAACTTACAAGTGTTTGAATTTTTCTCTACAAGCAAAAC</genome_strand>
        <mrna_strand>CAAACTCTGAGGCTGCACTTCACTGATTCCACTGTTATAACCATCGCTCATAGGATAACATCTGTTCTTGATAGTGACATGGTCCTACTATTAGAACACG..................................................................................GGCTGATTGCTGAATATGACACTCCAGGCAAGTTATTAGAGAACGAATCCTCGTTGTTTGCCAAGCTCGTGGCTGAGTATAGTATGAGATCAAATTCAAGTTTTGAGAATGCCTCAGACACATGAATCTTTCATTGACCACGTTATACGATGATGATGATGAAAACTAGTACACATGAATCTCAGACACTAACACTCTTTTGAGTTTCCATCCGTGGACGATAGAGCTTGAACAAGAACCCGCGAAATGCAGCTCATTGCATGTGACTTGAGGGAAACTGCAACAATCTTATGGCAGTGAAAGAAGTTCATCTATTTGTGCAATATTGATAGTGAAATGGCATCTGTTTTCTTTAGACTTTTTGATGTGAAAAAATGTTTTAAGTATTTGTTTACCAATAATTTGAATGTATGTTGAGTCAATTGATTAGTTAGTTAAGAGTGCACGGATTTTGTTCCTTATTGTAAAAGTAGTAAAACTGATTGTATTGAGTTGGAAGTGTCCTTACAANTATTAGAA-TTTTCTCTACAAGCAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E213980" ref_strand="-" ref_description="SGN-E213980 [cLEC-80-M18]">
      <seq>cgcgtgctactcaaaaaaagcaaggtccttgtcctagacgaggctacagcatctgttgacactgcaactgacaatctaattcagcaaactctgaggctgcacttcactgattccactgttataaccatcgctcataggataacatctgttcttgatagtgacatggtcctactattagaacacgggctgattgctgaatatgacactccaggcaagttattagagaacgaatcctcgttgtttgccaagctcgtggctgagtatagtatgagatcaaattcaagttttgagaatgcctcagacacatgaatctttcattgaccacgttatacgatgatgatgatgaaaactagtacacatgaatctcagacactaacactcttttgagtttccatccgtggacgatagagcttgaacaagaacccgcgaaatgcagctcattgcatgtgacttgagggaaactgcaacaatcttatggcagtgaaagaagttcatctatttgtgcaatattgatagtgaaatggcatctgttttctttagactttttgatgtgaaaaaatgttttaagtatttgtttaccaataatttgaatgtatgttgagtcaattgattagttagttaagagtgcacggattttgttccttattgtaaaagtagtaaaactttttgtattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="130214" stop="128858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129914" g_stop="129731" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129730" i_stop="129649" i_length="82">
            <donor d_prob="0.582" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129648" g_stop="129158" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="675" r_length="491" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E213980" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213980" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="129914" e_stop="129731"/>
          <exon e_start="129648" e_stop="129158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGTGCTACTCAAAAAAAGCAAGGTCCTTGTCCTAGACGAGGCTACAGCATCTGTTGACACTGCAACTGACAATCTAATTCAGCAAACTCTGAGGCTGCACTTCACTGATTCCACTGTTATAACCATCGCTCATAGGATAACATCTGTTCTTGATAGTGACATGGTCCTACTATTAGAACACGGTATGAATCAACATTTGCATTTTTTGAACAAACGGAGGTGGAAATTCTTGGTATTTACTTTCTTTTGTTTGCTATACTACAGGGCTGATTGCTGAATATGACACTCCAGGCAAGTTATTAGAGAACGAATCCTCGTTGTTTGCCAAGCTCGTGGCTGAGTATAGTATGAGATCAAATTCAAGTTTTGAGAATGCCTCAGACACATGAATCTTTCATTGACCACGTTATACGATGATGATGATGAAAACTAGTACACATGAATCTCAGACACTAACACTCTTTTGAGTTTCCATCCGTGGACGATAGAGCTTGAACAAGAACCCGCGAAATGCAGCTCATTGCATGTGACTTGAGGGAAACTGCAACAATCTTATGGCAGTGAAAGAAGTTCATCTATTTGTGCAATATTGATAGTGAAATGGCATCTGTTTTCTTTAGACTTTTTGATGTGAAAAAATGTTTTAAGTATTTGTTTACCAATAATTTGAATGTATGTTGAGTCAATTGATTAGTTAGTTAAGAGTGCACGGATTTTGTTCCTTATTGTAAAAGTAGTAAAACTTTTTGTATTGA</genome_strand>
        <mrna_strand>CGCGTGCTACTCAAAAAAAGCAAGGTCCTTGTCCTAGACGAGGCTACAGCATCTGTTGACACTGCAACTGACAATCTAATTCAGCAAACTCTGAGGCTGCACTTCACTGATTCCACTGTTATAACCATCGCTCATAGGATAACATCTGTTCTTGATAGTGACATGGTCCTACTATTAGAACACG..................................................................................GGCTGATTGCTGAATATGACACTCCAGGCAAGTTATTAGAGAACGAATCCTCGTTGTTTGCCAAGCTCGTGGCTGAGTATAGTATGAGATCAAATTCAAGTTTTGAGAATGCCTCAGACACATGAATCTTTCATTGACCACGTTATACGATGATGATGATGAAAACTAGTACACATGAATCTCAGACACTAACACTCTTTTGAGTTTCCATCCGTGGACGATAGAGCTTGAACAAGAACCCGCGAAATGCAGCTCATTGCATGTGACTTGAGGGAAACTGCAACAATCTTATGGCAGTGAAAGAAGTTCATCTATTTGTGCAATATTGATAGTGAAATGGCATCTGTTTTCTTTAGACTTTTTGATGTGAAAAAATGTTTTAAGTATTTGTTTACCAATAATTTGAATGTATGTTGAGTCAATTGATTAGTTAGTTAAGAGTGCACGGATTTTGTTCCTTATTGTAAAAGTAGTAAAACTTTTTGTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E380067" ref_strand="-" ref_description="SGN-E380067 [TUS-3-N24]">
      <seq>agaatggagagaactggagcgtaggccaaaggcagctggtctgtcttggccgcgtgctactcaaaaaaagcaaggtccttgtcctagacgaggctacagcatctgttgacactgcaactgacaatctaattcagcaaactctgaggctgcacttcactgattccactgttataaccatcgctcataggataacatctgttcttgatagtgacatggtcctactattagaacacgggctgattgctgaatatgacactccaggcaagttattagagaacgaatcctcgttgtttgccaagctcgtggctgagtatagtatgagatcaaattcaagttttgagaatgcctcagacacatgaatctttcattgaccacgttatacgatgatgatgatgaaaactagtacacatgaatctcagacactaacactcttttgagtttccatccgtggacgatagagcttgaacaagaacccgcgaaatgcagctcattgcatgtgacttgagggaaactgcaacaatcttatggcagtgaaagaagttcatctatttgtgcaatattgatagtgaaatggcatctgttttctttagactttttgatgagaaaaaatgttttaagtatttgtttaccaataatttgaatgtatgttgagtcaattgaatagttagttaagagtgctcggattttgttgacttattgtaaaagtagtaaaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="130264" stop="128868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129964" g_stop="129731" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129730" i_stop="129649" i_length="82">
            <donor d_prob="0.582" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129648" g_stop="129168" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="716" r_length="482" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E380067" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E380067" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="129964" e_stop="129731"/>
          <exon e_start="129648" e_stop="129168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGGAGAGAACTGGAGCGTAGGCCAAAGGCAGCTGGTCTGTCTTGGCCGCGTGCTACTCAAAAAAAGCAAGGTCCTTGTCCTAGACGAGGCTACAGCATCTGTTGACACTGCAACTGACAATCTAATTCAGCAAACTCTGAGGCTGCACTTCACTGATTCCACTGTTATAACCATCGCTCATAGGATAACATCTGTTCTTGATAGTGACATGGTCCTACTATTAGAACACGGTATGAATCAACATTTGCATTTTTTGAACAAACGGAGGTGGAAATTCTTGGTATTTACTTTCTTTTGTTTGCTATACTACAGGGCTGATTGCTGAATATGACACTCCAGGCAAGTTATTAGAGAACGAATCCTCGTTGTTTGCCAAGCTCGTGGCTGAGTATAGTATGAGATCAAATTCAAGTTTTGAGAATGCCTCAGACACATGAATCTTTCATTGACCACGTTATACGATGATGATGATGAAAACTAGTACACATGAATCTCAGACACTAACACTCTTTTGAGTTTCCATCCGTGGACGATAGAGCTTGAACAAGAACCCGCGAAATGCAGCTCATTGCATGTGACTTGAGGGAAACTGCAACAATCTTATGGCAGTGAAAGAAGTTCATCTATTTGTGCAATATTGATAGTGAAATGGCATCTGTTTTCTTTAGACTTTTTGATGTGAAAAAATGTTTTAAGTATTTGTTTACCAATAATTTGAATGTATGTTGAGTCAATTGATTAGTTAGTTAAGAGTGCACGGATTTTGTT-CCTTATTGTAAAAGTAGTAAAACTT</genome_strand>
        <mrna_strand>AGAATGGAGAGAACTGGAGCGTAGGCCAAAGGCAGCTGGTCTGTCTTGGCCGCGTGCTACTCAAAAAAAGCAAGGTCCTTGTCCTAGACGAGGCTACAGCATCTGTTGACACTGCAACTGACAATCTAATTCAGCAAACTCTGAGGCTGCACTTCACTGATTCCACTGTTATAACCATCGCTCATAGGATAACATCTGTTCTTGATAGTGACATGGTCCTACTATTAGAACACG..................................................................................GGCTGATTGCTGAATATGACACTCCAGGCAAGTTATTAGAGAACGAATCCTCGTTGTTTGCCAAGCTCGTGGCTGAGTATAGTATGAGATCAAATTCAAGTTTTGAGAATGCCTCAGACACATGAATCTTTCATTGACCACGTTATACGATGATGATGATGAAAACTAGTACACATGAATCTCAGACACTAACACTCTTTTGAGTTTCCATCCGTGGACGATAGAGCTTGAACAAGAACCCGCGAAATGCAGCTCATTGCATGTGACTTGAGGGAAACTGCAACAATCTTATGGCAGTGAAAGAAGTTCATCTATTTGTGCAATATTGATAGTGAAATGGCATCTGTTTTCTTTAGACTTTTTGATGAGAAAAAATGTTTTAAGTATTTGTTTACCAATAATTTGAATGTATGTTGAGTCAATTGAATAGTTAGTTAAGAGTGCTCGGATTTTGTTGACTTATTGTAAAAGTAGTAAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E204270" ref_strand="+" ref_description="SGN-E204270 [cLEC-13-H2]">
      <seq>aaactctgaggctgcacttcactgattccactgttataaccatcgctcataggataacatctgttcttgatagtgacatggtcctactattagaacacgggctgattgctgaatatgacactccaggcaagttattagagaacgaatcctcgttgtttgccaagctcgtggctgagtatagtatgagatcaaattcaagttttgagaatgcctcagacacatgaatctttcattgaccacgttatacgatgatgatgatgaaaactagtacacatgaatctcagacactaacactcttttgagtttccatccgtggacgatagagcttgaacaagaacccgcgaaatgcagctcattgcatgtgacttgagggaaactgcaacaatcttatggcagtgaaagaagttcatctatttgtgcaatattgatagtgaaatggcatctgttttctttagactttttgatgtgaaaaaatgttttaagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="130129" stop="128962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129829" g_stop="129731" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129730" i_stop="129649" i_length="82">
            <donor d_prob="0.582" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129648" g_stop="129262" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="486" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E204270" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129829" e_stop="129731"/>
          <exon e_start="129648" e_stop="129262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTGAGGCTGCACTTCACTGATTCCACTGTTATAACCATCGCTCATAGGATAACATCTGTTCTTGATAGTGACATGGTCCTACTATTAGAACACGGTATGAATCAACATTTGCATTTTTTGAACAAACGGAGGTGGAAATTCTTGGTATTTACTTTCTTTTGTTTGCTATACTACAGGGCTGATTGCTGAATATGACACTCCAGGCAAGTTATTAGAGAACGAATCCTCGTTGTTTGCCAAGCTCGTGGCTGAGTATAGTATGAGATCAAATTCAAGTTTTGAGAATGCCTCAGACACATGAATCTTTCATTGACCACGTTATACGATGATGATGATGAAAACTAGTACACATGAATCTCAGACACTAACACTCTTTTGAGTTTCCATCCGTGGACGATAGAGCTTGAACAAGAACCCGCGAAATGCAGCTCATTGCATGTGACTTGAGGGAAACTGCAACAATCTTATGGCAGTGAAAGAAGTTCATCTATTTGTGCAATATTGATAGTGAAATGGCATCTGTTTTCTTTAGACTTTTTGATGTGAAAAAATGTTTTAAGTAT</genome_strand>
        <mrna_strand>AAACTCTGAGGCTGCACTTCACTGATTCCACTGTTATAACCATCGCTCATAGGATAACATCTGTTCTTGATAGTGACATGGTCCTACTATTAGAACACG..................................................................................GGCTGATTGCTGAATATGACACTCCAGGCAAGTTATTAGAGAACGAATCCTCGTTGTTTGCCAAGCTCGTGGCTGAGTATAGTATGAGATCAAATTCAAGTTTTGAGAATGCCTCAGACACATGAATCTTTCATTGACCACGTTATACGATGATGATGATGAAAACTAGTACACATGAATCTCAGACACTAACACTCTTTTGAGTTTCCATCCGTGGACGATAGAGCTTGAACAAGAACCCGCGAAATGCAGCTCATTGCATGTGACTTGAGGGAAACTGCAACAATCTTATGGCAGTGAAAGAAGTTCATCTATTTGTGCAATATTGATAGTGAAATGGCATCTGTTTTCTTTAGACTTTTTGATGTGAAAAAATGTTTTAAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E375381" ref_strand="+" ref_description="SGN-E375381 [TUS-15-F4]">
      <seq>aaactctgaggctgcacttcactgattccactgttataaccatcgctcataggataacatctgttcttgatagtgacatggtcctactattagaacacgggctgattgctgaatatgacactccaggcaagttattagagaacgaatcctcgttgtttgccaagctcgtggctgagtatagtatgagatcaaattcaagttttgagaatgcctcagacacatgaatctttcattgaccacgttatacgatgatgatgatgaaaactagtacacatgaatctcagacactaacactcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="130129" stop="129149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129829" g_stop="129731" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129730" i_stop="129649" i_length="82">
            <donor d_prob="0.582" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129648" g_stop="129449" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="299" r_length="200" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E375381" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129829" e_stop="129731"/>
          <exon e_start="129648" e_stop="129449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTGAGGCTGCACTTCACTGATTCCACTGTTATAACCATCGCTCATAGGATAACATCTGTTCTTGATAGTGACATGGTCCTACTATTAGAACACGGTATGAATCAACATTTGCATTTTTTGAACAAACGGAGGTGGAAATTCTTGGTATTTACTTTCTTTTGTTTGCTATACTACAGGGCTGATTGCTGAATATGACACTCCAGGCAAGTTATTAGAGAACGAATCCTCGTTGTTTGCCAAGCTCGTGGCTGAGTATAGTATGAGATCAAATTCAAGTTTTGAGAATGCCTCAGACACATGAATCTTTCATTGACCACGTTATACGATGATGATGATGAAAACTAGTACACATGAATCTCAGACACTAACACTCTTT</genome_strand>
        <mrna_strand>AAACTCTGAGGCTGCACTTCACTGATTCCACTGTTATAACCATCGCTCATAGGATAACATCTGTTCTTGATAGTGACATGGTCCTACTATTAGAACACG..................................................................................GGCTGATTGCTGAATATGACACTCCAGGCAAGTTATTAGAGAACGAATCCTCGTTGTTTGCCAAGCTCGTGGCTGAGTATAGTATGAGATCAAATTCAAGTTTTGAGAATGCCTCAGACACATGAATCTTTCATTGACCACGTTATACGATGATGATGATGAAAACTAGTACACATGAATCTCAGACACTAACACTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E379805" ref_strand="+" ref_description="SGN-E379805 [TUS-3-N24]">
      <seq>catctcgtggagaggttgagttcaacaatcttcaggtccgatatgctccacacatgcctctcgtgttacgaggacttacatgcactttctttggtgggaagaagactggaattgttggtaggacaggcagtggtaaatcaactttaatacagacccttttccgcatagttgatcctgttgttggacaaataaagatagatggtaccaacatctccacaattggtctgcatgatctgcggtctagattgagtatcattccgcaggatccgactatgtttgagggaactgtacgcagcaacctagatccgctcgaagagcattcagatgatcaaatttgggaggcgctggacaaatgtcaactaggagacgaagttaggaagaaggaaggcaagctatattctacagtatctgagaatggagagaactggagcgtaggccaaaggcagctggtctgtcttggccgcgtgctactcaaaaaaagcaaggtccttgtcctagacgaggctacagcatctgttgacactgcaactgacaatctaattcagcaaactctgaggctgcacttcactgattccactgttataaccatcgctcataggataacatctgttcttgatagtgacatggtcctactattagaacacgggctgattgctngaatatgacactccaggcagttattagagaacgaatcctcgntgtttgccaagctcgtggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="130942" stop="129274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130642" g_stop="130608" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130607" i_stop="130519" i_length="89">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130518" g_stop="130213" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="341" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130212" i_stop="130117" i_length="96">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130116" g_stop="130053" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="405" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="130052" i_stop="129971" i_length="82">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129970" g_stop="129731" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="645" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="129730" i_stop="129649" i_length="82">
            <donor d_prob="0.582" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="129648" g_stop="129574" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="720" r_length="75" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E379805" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130642" e_stop="130608"/>
          <exon e_start="130518" e_stop="130213"/>
          <exon e_start="130116" e_stop="130053"/>
          <exon e_start="129970" e_stop="129731"/>
          <exon e_start="129648" e_stop="129574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCGTGGAGAGGTTGAGTTCAACAATCTTCAGGTAAATTGAGTTGTTCTCTGGTATTATGCAGGTAGAGTGCATTATTGTTGATTCATTGTATGTGTTGATAAATCTGAAAAATTTTATAGGTCCGATATGCTCCACACATGCCTCTCGTGTTACGAGGACTTACATGCACTTTCTTTGGTGGGAAGAAGACTGGAATTGTTGGTAGGACAGGCAGTGGTAAATCAACTTTAATACAGACCCTTTTCCGCATAGTTGATCCTGTTGTTGGACAAATAAAGATAGATGGTACCAACATCTCCACAATTGGTCTGCATGATCTGCGGTCTAGATTGAGTATCATTCCGCAGGATCCGACTATGTTTGAGGGAACTGTACGCAGCAACCTAGATCCGCTCGAAGAGCATTCAGATGATCAAATTTGGGAGGTAACAGCTTAGTTTGCCTATTTCTAGAATTTTGGTTTCACATTGGAAAATGAAACTTTTATGTATTGAGAAACTTTATTCAATTTTATGTTTCAGGCGCTGGACAAATGTCAACTAGGAGACGAAGTTAGGAAGAAGGAAGGCAAGCTATATTCTACAGGTTAGAACCACATCATGTTCCGATGATTTCCACATTTAAAGCTGTGACACTTATAATGCTTATATTCTTTGGATTGCTGCAGTATCTGAGAATGGAGAGAACTGGAGCGTAGGCCAAAGGCAGCTGGTCTGTCTTGGCCGCGTGCTACTCAAAAAAAGCAAGGTCCTTGTCCTAGACGAGGCTACAGCATCTGTTGACACTGCAACTGACAATCTAATTCAGCAAACTCTGAGGCTGCACTTCACTGATTCCACTGTTATAACCATCGCTCATAGGATAACATCTGTTCTTGATAGTGACATGGTCCTACTATTAGAACACGGTATGAATCAACATTTGCATTTTTTGAACAAACGGAGGTGGAAATTCTTGGTATTTACTTTCTTTTGTTTGCTATACTACAGGGCTGATTGCT-GAATATGACACTCCAGGCAAGTTATTAGAGAACGAATCCTCGTTGTTTGCCAAGCTCGTGGCTG</genome_strand>
        <mrna_strand>CATCTCGTGGAGAGGTTGAGTTCAACAATCTTCAG.........................................................................................GTCCGATATGCTCCACACATGCCTCTCGTGTTACGAGGACTTACATGCACTTTCTTTGGTGGGAAGAAGACTGGAATTGTTGGTAGGACAGGCAGTGGTAAATCAACTTTAATACAGACCCTTTTCCGCATAGTTGATCCTGTTGTTGGACAAATAAAGATAGATGGTACCAACATCTCCACAATTGGTCTGCATGATCTGCGGTCTAGATTGAGTATCATTCCGCAGGATCCGACTATGTTTGAGGGAACTGTACGCAGCAACCTAGATCCGCTCGAAGAGCATTCAGATGATCAAATTTGGGAG................................................................................................GCGCTGGACAAATGTCAACTAGGAGACGAAGTTAGGAAGAAGGAAGGCAAGCTATATTCTACAG..................................................................................TATCTGAGAATGGAGAGAACTGGAGCGTAGGCCAAAGGCAGCTGGTCTGTCTTGGCCGCGTGCTACTCAAAAAAAGCAAGGTCCTTGTCCTAGACGAGGCTACAGCATCTGTTGACACTGCAACTGACAATCTAATTCAGCAAACTCTGAGGCTGCACTTCACTGATTCCACTGTTATAACCATCGCTCATAGGATAACATCTGTTCTTGATAGTGACATGGTCCTACTATTAGAACACG..................................................................................GGCTGATTGCTNGAATATGACACTCCAGGC-AGTTATTAGAGAACGAATCCTCGNTGTTTGCCAAGCTCGTGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E209403" ref_strand="+" ref_description="SGN-E209403 [cLEC-53-D23]">
      <seq>ggccatctcgtggagaggttgagttcaacaatcttcaggtccgatatgctccacacatgcctctcgtgttacgaggacttacatgcactttctttggtgggaagaagactggaattgttggtaggacaggcagtggtaaatcaactttaatacagacccttttccgcatagttgatcctgttgttggacaaataaagatagatggtaccaacatctccacaattggtctgcatgatctgcggtctagattgagtatcattccgcaggatccgactatgtttgagggaactgtacgcagcaacctagatccgctcgaagagcattcagatgatcaaatttgggaggcgctggacaaatgtcaactaggagacgaagttaggaagaaagaaggcaagctatattctacagtatctgagaatggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="130945" stop="129656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130645" g_stop="130608" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130607" i_stop="130519" i_length="89">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130518" g_stop="130213" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="344" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130212" i_stop="130117" i_length="96">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130116" g_stop="130053" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="408" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="130052" i_stop="129971" i_length="82">
            <donor d_prob="0.948" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129970" g_stop="129956" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="423" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E209403" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130645" e_stop="130608"/>
          <exon e_start="130518" e_stop="130213"/>
          <exon e_start="130116" e_stop="130053"/>
          <exon e_start="129970" e_stop="129956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCATCTCGTGGAGAGGTTGAGTTCAACAATCTTCAGGTAAATTGAGTTGTTCTCTGGTATTATGCAGGTAGAGTGCATTATTGTTGATTCATTGTATGTGTTGATAAATCTGAAAAATTTTATAGGTCCGATATGCTCCACACATGCCTCTCGTGTTACGAGGACTTACATGCACTTTCTTTGGTGGGAAGAAGACTGGAATTGTTGGTAGGACAGGCAGTGGTAAATCAACTTTAATACAGACCCTTTTCCGCATAGTTGATCCTGTTGTTGGACAAATAAAGATAGATGGTACCAACATCTCCACAATTGGTCTGCATGATCTGCGGTCTAGATTGAGTATCATTCCGCAGGATCCGACTATGTTTGAGGGAACTGTACGCAGCAACCTAGATCCGCTCGAAGAGCATTCAGATGATCAAATTTGGGAGGTAACAGCTTAGTTTGCCTATTTCTAGAATTTTGGTTTCACATTGGAAAATGAAACTTTTATGTATTGAGAAACTTTATTCAATTTTATGTTTCAGGCGCTGGACAAATGTCAACTAGGAGACGAAGTTAGGAAGAAGGAAGGCAAGCTATATTCTACAGGTTAGAACCACATCATGTTCCGATGATTTCCACATTTAAAGCTGTGACACTTATAATGCTTATATTCTTTGGATTGCTGCAGTATCTGAGAATGGAG</genome_strand>
        <mrna_strand>GGCCATCTCGTGGAGAGGTTGAGTTCAACAATCTTCAG.........................................................................................GTCCGATATGCTCCACACATGCCTCTCGTGTTACGAGGACTTACATGCACTTTCTTTGGTGGGAAGAAGACTGGAATTGTTGGTAGGACAGGCAGTGGTAAATCAACTTTAATACAGACCCTTTTCCGCATAGTTGATCCTGTTGTTGGACAAATAAAGATAGATGGTACCAACATCTCCACAATTGGTCTGCATGATCTGCGGTCTAGATTGAGTATCATTCCGCAGGATCCGACTATGTTTGAGGGAACTGTACGCAGCAACCTAGATCCGCTCGAAGAGCATTCAGATGATCAAATTTGGGAG................................................................................................GCGCTGGACAAATGTCAACTAGGAGACGAAGTTAGGAAGAAAGAAGGCAAGCTATATTCTACAG..................................................................................TATCTGAGAATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E443089" ref_strand="+" ref_description="SGN-E443089 [cSTA-36-A2]">
      <seq>cttggagaggttgagtttaacaatcttcaggtaaattgagttgttctctggtgttgtgcaggtagatggagttattgttaattcattgtatgtgttgatatatctgaaaacttttataggttcgatatgctccccacatgcctctcgtgttgagagggcttacatgcactttctttggtgggaagaagactggaattgttggtaggacaggcagtggtaaatcgacattaatacagaccctcttccgcatagttgatcctgttgctggacagataaaaatagatggtaccaacatctcctcaattggtctgcatgatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="130937" stop="130017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130637" g_stop="130317" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E443089" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130637" e_stop="130317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGGAGAGGTTGAGTTCAACAATCTTCAGGTAAATTGAGTTGTTCTCTGGTATTATGCAGGTAGAGTGCATTATTGTTGATTCATTGTATGTGTTGATAAATCTGAAAAATTTTATAGGTCCGATATGCTCCACACATGCCTCTCGTGTTACGAGGACTTACATGCACTTTCTTTGGTGGGAAGAAGACTGGAATTGTTGGTAGGACAGGCAGTGGTAAATCAACTTTAATACAGACCCTTTTCCGCATAGTTGATCCTGTTGTTGGACAAATAAAGATAGATGGTACCAACATCTCCACAATTGGTCTGCATGATCTGC</genome_strand>
        <mrna_strand>CTTGGAGAGGTTGAGTTTAACAATCTTCAGGTAAATTGAGTTGTTCTCTGGTGTTGTGCAGGTAGATGGAGTTATTGTTAATTCATTGTATGTGTTGATATATCTGAAAACTTTTATAGGTTCGATATGCTCCCCACATGCCTCTCGTGTTGAGAGGGCTTACATGCACTTTCTTTGGTGGGAAGAAGACTGGAATTGTTGGTAGGACAGGCAGTGGTAAATCGACATTAATACAGACCCTCTTCCGCATAGTTGATCCTGTTGCTGGACAGATAAAAATAGATGGTACCAACATCTCCTCAATTGGTCTGCATGATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-zCdHWu/sgn_ests_tomato_potato" ref_id="SGN-E206721" ref_strand="+" ref_description="SGN-E206721 [cLEC-31-I8]">
      <seq>atcattgcagtaatgtcacaagtcgcatggcagatcttcatagtctttatcccagtcattgcaatttgcatttggttggagcaatattacatccctgcagcacgagaactggcacgtctaaatgggacatgcaaagctccagtaatacagcattttgctgaaacaatttcaggatcaagcacaattcgaagtttcgatcaagaatctagattccaggatgcaagcatgagattaatagacaattattctcggcctaagtttcacacagctgctgcgatggagtggctttgcatgcgtttggatatgttatctctgattacttttgctttcgcgttgattttcttgatctctcttcctgttggaacaatcgatccaagtgttgctggcttagctgttacatatggacttaatctaaacgtactgcaagcttgggttgtatggaatctttgtatgatggaaaataaaattatttccgtcgaaagaatacttcagtatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-TW61I/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0184E04.1" temp_strand="-" temp_description="C07HBa0184E04.1  AC212637.1 htgs_phase:1 submitted_to_sgn_as:gi|158262132|gb|AC212637.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="131701" stop="130400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131401" g_stop="131321" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131320" i_stop="131221" i_length="100">
            <donor d_prob="0.847" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131220" g_stop="130926" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="376" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130925" i_stop="130823" i_length="103">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130822" g_stop="130700" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="499" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.1" gen_strand="-" ref_id="SGN-E206721" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131401" e_stop="131321"/>
          <exon e_start="131220" e_stop="130926"/>
          <exon e_start="130822" e_stop="130700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTGCAGTAATGTCACAAGTCGCATGGCAGATCTTCATAGTCTTTATCCCAGTCATTGCAATTTGCATTTGGTTGGAGGTTGCTACTTTGCTTTTTTCTATTCTCTGAATTTTATTACTTTAGTGGCGTATGTGAACATGAATTATATAATTAAGTGGTGTGTTTTGTTTAATTGCAGCAATATTACATCCCTGCAGCACGAGAACTGGCACGTCTAAATGGGACATGCAAAGCTCCAGTAATACAGCATTTTGCTGAAACAATTTCAGGATCAAGCACAATTCGAAGTTTCGATCAAGAATCTAGATTCCAGGATGCAAGCATGAGATTAATAGACAATTATTCTCGGCCTAAGTTTCACACAGCTGCTGCGATGGAGTGGCTTTGCATGCGTTTGGATATGTTATCTCTGATTACTTTTGCTTTCGCGTTGATTTTCTTGATCTCTCTTCCTGTTGGAACAATCGATCCAAGTGAGTGCTCTATCTTCATCAGGTTTTCATTCCATCAAATTTGTTAAATAGTTCTAAAGAGTACAATCTCACCTATGTTTTCACCTTGTTCCTGCCCTTACAGGTGTTGCTGGCTTAGCTGTTACATATGGACTTAATCTAAACGTACTGCAAGCTTGGGTTGTATGGAATCTTTGTATGATGGAAAATAAAATTATTTCCGTCGAAAGAATACTTCAGTATGCTG</genome_strand>
        <mrna_strand>ATCATTGCAGTAATGTCACAAGTCGCATGGCAGATCTTCATAGTCTTTATCCCAGTCATTGCAATTTGCATTTGGTTGGAG....................................................................................................CAATATTACATCCCTGCAGCACGAGAACTGGCACGTCTAAATGGGACATGCAAAGCTCCAGTAATACAGCATTTTGCTGAAACAATTTCAGGATCAAGCACAATTCGAAGTTTCGATCAAGAATCTAGATTCCAGGATGCAAGCATGAGATTAATAGACAATTATTCTCGGCCTAAGTTTCACACAGCTGCTGCGATGGAGTGGCTTTGCATGCGTTTGGATATGTTATCTCTGATTACTTTTGCTTTCGCGTTGATTTTCTTGATCTCTCTTCCTGTTGGAACAATCGATCCAA.......................................................................................................GTGTTGCTGGCTTAGCTGTTACATATGGACTTAATCTAAACGTACTGCAAGCTTGGGTTGTATGGAATCTTTGTATGATGGAAAATAAAATTATTTCCGTCGAAAGAATACTTCAGTATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>288</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="690" PGL_stop="1"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="690" e_stop="1"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="690" e_stop="1" e_length="690"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="690" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="685" stop="129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="683" stop="161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="671" stop="144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="670" stop="52"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="670" stop="61"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="670" stop="203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="658" stop="227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="652" stop="92"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="520" stop="9"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270929" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAAAAAAAAAAGAAGAGAGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAAT</gDNA_template>
            <first_frame> Q  K  K  K  R  R  E  N  M  N  L  S  L  L  L  V  V  I  F  L  C  F  A  S  P  S  L  S  V  R  C  N  P  K  D  K  K  V  L  L  Q  I  K  K  D  L  G  N  P  Y  H  L  A  S  W  D  P  N  T  D  C  C  Y  W  Y  V  V  K  C  D  R  K  T  N  R  I  N  A  L  T  V  F  Q  A  N  I  S  G  Q  I  P  A  A  V  G  D  L  P  Y  L  E  T  L  E  F  H  H  V  T  N  L  T  G  T  I  P  P  A  I  A  K  L  T  N  L  K  M  L  R  L  S  F  T  N  L  T  G  P  I  P  E  F  L  S  Q  L  K  N  L  T  L  L  E  L  N  Y  N  Q  F  T  G  T  I  P  S  S  L  S  Q  L  P  N  L  L  A  M  Y  L  D  R  N  K  L  T  G  T  I  P  E  S  F  G  R  F  K  G  P  N  I  P  D  L  Y  L  S  H  N  S  L  T  G  H  V  P  A  S  L  G  D  L  N  F  S  T  L  D  F  S  R  N </first_frame>
            <second_frame>  K  K  K  K  E  E  R  I  *  T  C  L  F  F  L  *  L  F  F  F  A  L  L  L  L  H  Y  Q  *  D  A  I  R  K  T  K  K  S  F  Y  K  *  R  K  T  *  A  I  L  T  I  *  L  H  G  I  Q  T  Q  I  A  V  T  G  T  S  *  N  V  T  G  K  P  T  G  *  M  L  S  P  S  S  K  P  I  S  P  A  K  F  R  Q  P  S  E  T  F  H  I  S  K  H  W  N  F  I  M  L  L  I  S  P  E  Q  F  H  L  Q  L  R  S  S  Q  I  S  K  C  *  G  S  A  S  L  T  L  Q  V  R  S  L  N  S  L  V  S  *  R  I  *  R  C  S  S  *  I  T  I  N  L  P  E  Q  S  L  L  P  S  L  S  F  R  I  C  *  R  C  T  *  I  V  T  N  S  P  E  Q  Y  R  N  R  L  G  D  L  K  D  Q  I  Y  Q  I  S  T  F  H  T  T  A  *  P  D  M  C  R  H  L  *  V  I  *  I  F  P  R  L  I  S  P  G   </second_frame>
            <third_frame>   K  K  K  K  K  R  E  Y  E  L  V  S  S  S  C  S  Y  F  S  L  L  C  F  S  F  T  I  S  K  M  Q  S  E  R  Q  K  S  P  S  T  N  K  E  R  L  R  Q  S  L  P  F  S  F  M  G  S  K  H  R  L  L  L  L  V  R  R  K  M  *  P  E  N  Q  P  D  K  C  S  H  R  L  P  S  Q  Y  L  R  P  N  S  G  S  R  R  R  P  S  I  S  R  N  I  G  I  S  S  C  Y  *  S  H  R  N  N  S  T  C  N  C  E  A  H  K  S  Q  N  V  K  A  Q  L  H  *  P  Y  R  S  D  P  *  I  P  *  S  A  E  E  F  D  V  A  R  V  E  L  Q  S  I  Y  R  N  N  P  F  F  P  L  S  A  S  E  F  A  S  D  V  L  R  S  *  Q  T  H  R  N  N  T  G  I  V  W  E  I  *  R  T  K  Y  T  R  S  L  P  F  T  Q  Q  L  D  R  T  C  A  G  I  F  R  *  F  E  F  F  H  A  *  F  L  Q  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="690" stop="1"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKKKRRENMNLSLLLVVIFLCFASPSLSVRCNPKDKKVLLQIKKDLGNPYHLASWDPNTDCCYWYVVKCDRKTNRINALTVFQANISGQIPAAVGDLPYLETLEFHHVTNLTGTIPPAIAKLTNLKMLRLSFTNLTGPIPEFLSQLKNLTLLELNYNQFTGTIPSSLSQLPNLLAMYLDRNKLTGTIPESFGRFKGPNIPDLYLSHNSLTGHVPASLGDLNFSTLDFSRN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="8147" PGL_stop="15852"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8147" e_stop="8774"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="8147" e_stop="8774" e_length="628"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8147" stop="8774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8148" stop="8678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8148" stop="8629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8151" stop="8681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8151" stop="8629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8151" stop="8627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8152" stop="8695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8154" stop="8681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8156" stop="8687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8156" stop="8687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8167" stop="8321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8176" stop="8678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213293" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8177" stop="8687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8202" stop="8679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8202" stop="8654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8259" stop="8678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8261" stop="8681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8336" stop="8678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221814" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8385" stop="8623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722731" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGGGTTCGGTTATTCGTTAATGTATTTTTTCTTACACGCACCAACTATAATAATTGTGCCTCGATCCCTAGTAAGTTGGGAATGTTAGGG</gDNA_template>
            <first_frame> Q  N  G  *  I  I  *  Y  N  D  F  F  A  F  C  T  D  Y  H  S  T  N  C  N  N  K  C  C  R  N  T  R  S  Y  L  Q  G  H  N  Q  *  P  Y  A  M  F  T  C  S  N  G  E  E  T  S  E  T  D  A  G  L  L  R  S  A  T  Q  G  *  F  T  V  Y  V  Q  P  E  I  *  V  G  E  I  W  N  Q  S  *  S  C  N  E  S  A  *  A  M  *  N  *  G  S  R  W  M  L  T  S  A  Y  T  L  F  S  P  I  S  T  C  G  I  L  V  R  M  L  E  K  C  W  D  *  L  R  K  K  S  M  Y  F  Y  L  I  L  F  *  I  V  S  L  H  F  V  K  F  D  I  F  F  F  Y  V  R  L  *  F  L  V  F  E  N  L  N  K  L  S  L  S  C  W  G  S  V  I  R  *  C  I  F  S  Y  T  H  Q  L  *  *  L  C  L  D  P  *  *  V  G  N  V  R  </first_frame>
            <second_frame>  K  M  A  K  S  Y  S  T  M  I  F  L  L  F  A  L  I  I  T  V  Q  I  A  T  I  N  A  A  E  T  P  E  V  I  C  K  V  T  I  N  D  L  M  L  C  L  P  A  V  M  G  K  R  P  P  K  P  T  P  D  C  C  A  V  L  R  K  A  D  L  Q  C  M  C  N  Q  K  S  E  L  G  K  F  G  I  S  P  E  A  A  M  N  L  P  K  Q  C  K  I  K  V  P  D  G  C  *  H  L  R  T  L  Y  S  L  Q  F  L  L  V  G  F  *  C  V  C  *  R  S  V  G  T  N  *  E  K  R  A  C  I  F  T  *  F  C  F  E  L  F  R  F  T  L  *  S  L  T  F  F  F  F  M  C  V  C  N  F  W  Y  L  R  I  *  I  N  F  L  *  V  V  G  V  R  L  F  V  N  V  F  F  L  T  R  T  N  Y  N  N  C  A  S  I  P  S  K  L  G  M  L  G </second_frame>
            <third_frame>   K  W  L  N  H  I  V  Q  *  F  F  C  F  L  H  *  L  S  Q  Y  K  L  Q  Q  *  M  L  Q  K  H  Q  K  L  F  A  R  S  Q  S  M  T  L  C  Y  V  Y  L  Q  *  W  G  R  D  L  R  N  R  R  R  I  V  A  Q  C  Y  A  R  L  I  Y  S  V  C  A  T  R  N  L  S  W  G  N  L  E  S  V  L  K  L  Q  *  I  C  L  S  N  V  K  L  R  F  P  M  D  V  N  I  C  V  H  S  I  L  S  N  F  Y  L  W  D  F  S  A  Y  A  R  E  V  L  G  L  I  K  K  K  E  H  V  F  L  P  D  F  V  L  N  C  F  A  S  L  C  E  V  *  H  F  F  F  L  C  A  F  V  I  S  G  I  *  E  F  K  *  T  F  F  E  L  L  G  F  G  Y  S  L  M  Y  F  F  L  H  A  P  T  I  I  I  V  P  R  S  L  V  S  W  E  C  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8148" stop="8465"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMAKSYSTMIFLLFALIITVQIATINAAETPEVICKVTINDLMLCLPAVMGKRPPKPTPDCCAVLRKADLQCMCNQKSELGKFGISPEAAMNLPKQCKIKVPDGC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="8148" e_stop="8687"/>
            <exon e_start="10372" e_stop="10405"/>
            <exon e_start="12018" e_stop="12074"/>
            <exon e_start="12459" e_stop="12483"/>
            <exon e_start="13600" e_stop="13632"/>
            <exon e_start="15823" e_stop="15852"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.005" e_score="0.735"/>
          <exon-intron don_prob="0.000" acc_prob="0.398" e_score="0.649"/>
          <exon-intron don_prob="0.972" acc_prob="0.638" e_score="0.400"/>
          <exon-intron don_prob="0.876" acc_prob="0.431" e_score="0.424"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8148" e_stop="8687" e_length="540"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="8688" i_stop="10371" i_length="1684"/>
          </intron>
          <exon e_serial="2" e_score="0.735">
            <gDNA_exon_boundary e_start="10372" e_stop="10405" e_length="34"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.005">
            <gDNA_intron_boundary i_start="10406" i_stop="12017" i_length="1612"/>
          </intron>
          <exon e_serial="3" e_score="0.649">
            <gDNA_exon_boundary e_start="12018" e_stop="12074" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.398">
            <gDNA_intron_boundary i_start="12075" i_stop="12458" i_length="384"/>
          </intron>
          <exon e_serial="4" e_score="0.400">
            <gDNA_exon_boundary e_start="12459" e_stop="12483" e_length="25"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="0.638">
            <gDNA_intron_boundary i_start="12484" i_stop="13599" i_length="1116"/>
          </intron>
          <exon e_serial="5" e_score="0.424">
            <gDNA_exon_boundary e_start="13600" e_stop="13632" e_length="33"/>
          </exon>
          <intron i_serial="5" don_prob="0.876" acc_prob="0.431">
            <gDNA_intron_boundary i_start="13633" i_stop="15822" i_length="2190"/>
          </intron>
          <exon e_serial="6" e_score="0.667">
            <gDNA_exon_boundary e_start="15823" e_stop="15852" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8148" stop="8678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8148" stop="8629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8151" stop="8681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8151" stop="8629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8151" stop="8627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8154" stop="8681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8156" stop="8687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8156" stop="8687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8167" stop="8321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8176" stop="8678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213293" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8177" stop="8687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8202" stop="8679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8202" stop="8654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8259" stop="8678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8261" stop="8681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8310" stop="8687"/>
              <exon start="10372" stop="10405"/>
              <exon start="12018" stop="12074"/>
              <exon start="12459" stop="12483"/>
              <exon start="13600" stop="13632"/>
              <exon start="15823" stop="15852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8336" stop="8678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221814" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8385" stop="8623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722731" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGG : GTTGTCAAAATACAACAAAAAAAGGAAAAAAGAA : AAAAAAAAAACAAGAGATACAATAATACTAGGAAGTAATTGACAAGATAACAAAAAA : ATCAAAATTGGGGATTGGATTTAAT : GTCGCACATTGCTTGACTTATTCAAAAATGAAG : AATATCGAAGACGGGATAGTAAACAAAAAA</gDNA_template>
            <first_frame> K  M  A  K  S  Y  S  T  M  I  F  L  L  F  A  L  I  I  T  V  Q  I  A  T  I  N  A  A  E  T  P  E  V  I  C  K  V  T  I  N  D  L  M  L  C  L  P  A  V  M  G  K  R  P  P  K  P  T  P  D  C  C  A  V  L  R  K  A  D  L  Q  C  M  C  N  Q  K  S  E  L  G  K  F  G  I  S  P  E  A  A  M  N  L  P  K  Q  C  K  I  K  V  P  D  G  C  *  H  L  R  T  L  Y  S  L  Q  F  L  L  V  G  F  *  C  V  C  *  R  S  V  G  T  N  *  E  K  R  A  C  I  F  T  *  F  C  F  E  L  F  R  F  T  L  *  S  L  T  F  F  F  F  M  C  V  C  N  F  W  Y  L  R  I  *  I  N  F  L  *  V  V  G  :  V  V  K  I  Q  Q  K  K  E  K  R   : K  K  K  N  K  R  Y  N  N  T  R  K  *  L  T  R  *  Q  K   : N  Q  N  W  G  L  D  L  M :   S  H  I  A  *  L  I  Q  K  *  R :   I  S  K  T  G  *  *  T  K   </first_frame>
            <second_frame>  K  W  L  N  H  I  V  Q  *  F  F  C  F  L  H  *  L  S  Q  Y  K  L  Q  Q  *  M  L  Q  K  H  Q  K  L  F  A  R  S  Q  S  M  T  L  C  Y  V  Y  L  Q  *  W  G  R  D  L  R  N  R  R  R  I  V  A  Q  C  Y  A  R  L  I  Y  S  V  C  A  T  R  N  L  S  W  G  N  L  E  S  V  L  K  L  Q  *  I  C  L  S  N  V  K  L  R  F  P  M  D  V  N  I  C  V  H  S  I  L  S  N  F  Y  L  W  D  F  S  A  Y  A  R  E  V  L  G  L  I  K  K  K  E  H  V  F  L  P  D  F  V  L  N  C  F  A  S  L  C  E  V  *  H  F  F  F  L  C  A  F  V  I  S  G  I  *  E  F  K  *  T  F  F  E  L  L  G :   L  S  K  Y  N  K  K  R  K  K  E  :  K  K  K  T  R  D  T  I  I  L  G  S  N  *  Q  D  N  K  K  :  I  K  I  G  D  W  I  *   : C  R  T  L  L  D  L  F  K  N  E   : E  Y  R  R  R  D  S  K  Q  K  </second_frame>
            <third_frame>   N  G  *  I  I  *  Y  N  D  F  F  A  F  C  T  D  Y  H  S  T  N  C  N  N  K  C  C  R  N  T  R  S  Y  L  Q  G  H  N  Q  *  P  Y  A  M  F  T  C  S  N  G  E  E  T  S  E  T  D  A  G  L  L  R  S  A  T  Q  G  *  F  T  V  Y  V  Q  P  E  I  *  V  G  E  I  W  N  Q  S  *  S  C  N  E  S  A  *  A  M  *  N  *  G  S  R  W  M  L  T  S  A  Y  T  L  F  S  P  I  S  T  C  G  I  L  V  R  M  L  E  K  C  W  D  *  L  R  K  K  S  M  Y  F  Y  L  I  L  F  *  I  V  S  L  H  F  V  K  F  D  I  F  F  F  Y  V  R  L  *  F  L  V  F  E  N  L  N  K  L  S  L  S  C  W   : G  C  Q  N  T  T  K  K  G  K  K  K :   K  K  K  Q  E  I  Q  *  Y  *  E  V  I  D  K  I  T  K  K :   S  K  L  G  I  G  F  N  :  V  A  H  C  L  T  Y  S  K  M  K  :  N  I  E  D  G  I  V  N  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8148" stop="8465"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMAKSYSTMIFLLFALIITVQIATINAAETPEVICKVTINDLMLCLPAVMGKRPPKPTPDCCAVLRKADLQCMCNQKSELGKFGISPEAAMNLPKQCKIKVPDGC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="8148" e_stop="8690"/>
            <exon e_start="12018" e_stop="12073"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.005" e_score="1.000"/>
          <exon-only e_score="0.643"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8148" e_stop="8690" e_length="543"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.005">
            <gDNA_intron_boundary i_start="8691" i_stop="12017" i_length="3327"/>
          </intron>
          <exon e_serial="2" e_score="0.643">
            <gDNA_exon_boundary e_start="12018" e_stop="12073" e_length="56"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8148" stop="8678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8148" stop="8629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8151" stop="8681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8151" stop="8629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8151" stop="8627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8154" stop="8681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8156" stop="8687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8156" stop="8687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8167" stop="8321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8176" stop="8678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213293" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8177" stop="8687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8202" stop="8679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8202" stop="8654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8256" stop="8690"/>
              <exon start="12018" stop="12073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8259" stop="8678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8261" stop="8681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8336" stop="8678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221814" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8385" stop="8623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722731" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGGGTT : AAAAAAAAAACAAGAGATACAATAATACTAGGAAGTAATTGACAAGATAACAAAAA</gDNA_template>
            <first_frame> K  M  A  K  S  Y  S  T  M  I  F  L  L  F  A  L  I  I  T  V  Q  I  A  T  I  N  A  A  E  T  P  E  V  I  C  K  V  T  I  N  D  L  M  L  C  L  P  A  V  M  G  K  R  P  P  K  P  T  P  D  C  C  A  V  L  R  K  A  D  L  Q  C  M  C  N  Q  K  S  E  L  G  K  F  G  I  S  P  E  A  A  M  N  L  P  K  Q  C  K  I  K  V  P  D  G  C  *  H  L  R  T  L  Y  S  L  Q  F  L  L  V  G  F  *  C  V  C  *  R  S  V  G  T  N  *  E  K  R  A  C  I  F  T  *  F  C  F  E  L  F  R  F  T  L  *  S  L  T  F  F  F  F  M  C  V  C  N  F  W  Y  L  R  I  *  I  N  F  L  *  V  V  G  V  :  K  K  K  T  R  D  T  I  I  L  G  S  N  *  Q  D  N  K   </first_frame>
            <second_frame>  K  W  L  N  H  I  V  Q  *  F  F  C  F  L  H  *  L  S  Q  Y  K  L  Q  Q  *  M  L  Q  K  H  Q  K  L  F  A  R  S  Q  S  M  T  L  C  Y  V  Y  L  Q  *  W  G  R  D  L  R  N  R  R  R  I  V  A  Q  C  Y  A  R  L  I  Y  S  V  C  A  T  R  N  L  S  W  G  N  L  E  S  V  L  K  L  Q  *  I  C  L  S  N  V  K  L  R  F  P  M  D  V  N  I  C  V  H  S  I  L  S  N  F  Y  L  W  D  F  S  A  Y  A  R  E  V  L  G  L  I  K  K  K  E  H  V  F  L  P  D  F  V  L  N  C  F  A  S  L  C  E  V  *  H  F  F  F  L  C  A  F  V  I  S  G  I  *  E  F  K  *  T  F  F  E  L  L  G  L :   K  K  K  Q  E  I  Q  *  Y  *  E  V  I  D  K  I  T  K  </second_frame>
            <third_frame>   N  G  *  I  I  *  Y  N  D  F  F  A  F  C  T  D  Y  H  S  T  N  C  N  N  K  C  C  R  N  T  R  S  Y  L  Q  G  H  N  Q  *  P  Y  A  M  F  T  C  S  N  G  E  E  T  S  E  T  D  A  G  L  L  R  S  A  T  Q  G  *  F  T  V  Y  V  Q  P  E  I  *  V  G  E  I  W  N  Q  S  *  S  C  N  E  S  A  *  A  M  *  N  *  G  S  R  W  M  L  T  S  A  Y  T  L  F  S  P  I  S  T  C  G  I  L  V  R  M  L  E  K  C  W  D  *  L  R  K  K  S  M  Y  F  Y  L  I  L  F  *  I  V  S  L  H  F  V  K  F  D  I  F  F  F  Y  V  R  L  *  F  L  V  F  E  N  L  N  K  L  S  L  S  C  W  G   : *  K  K  N  K  R  Y  N  N  T  R  K  *  L  T  R  *  Q  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8148" stop="8465"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMAKSYSTMIFLLFALIITVQIATINAAETPEVICKVTINDLMLCLPAVMGKRPPKPTPDCCAVLRKADLQCMCNQKSELGKFGISPEAAMNLPKQCKIKVPDGC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="8148" e_stop="8681"/>
            <exon e_start="10286" e_stop="10302"/>
            <exon e_start="10378" e_stop="10405"/>
            <exon e_start="11197" e_stop="11246"/>
            <exon e_start="12459" e_stop="12483"/>
            <exon e_start="12621" e_stop="12627"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.824"/>
          <exon-intron don_prob="0.000" acc_prob="0.333" e_score="0.786"/>
          <exon-intron don_prob="0.829" acc_prob="0.398" e_score="0.400"/>
          <exon-intron don_prob="0.972" acc_prob="0.924" e_score="0.600"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8148" e_stop="8681" e_length="534"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="8682" i_stop="10285" i_length="1604"/>
          </intron>
          <exon e_serial="2" e_score="0.824">
            <gDNA_exon_boundary e_start="10286" e_stop="10302" e_length="17"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="10303" i_stop="10377" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="0.786">
            <gDNA_exon_boundary e_start="10378" e_stop="10405" e_length="28"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.333">
            <gDNA_intron_boundary i_start="10406" i_stop="11196" i_length="791"/>
          </intron>
          <exon e_serial="4" e_score="0.400">
            <gDNA_exon_boundary e_start="11197" e_stop="11246" e_length="50"/>
          </exon>
          <intron i_serial="4" don_prob="0.829" acc_prob="0.398">
            <gDNA_intron_boundary i_start="11247" i_stop="12458" i_length="1212"/>
          </intron>
          <exon e_serial="5" e_score="0.600">
            <gDNA_exon_boundary e_start="12459" e_stop="12483" e_length="25"/>
          </exon>
          <intron i_serial="5" don_prob="0.972" acc_prob="0.924">
            <gDNA_intron_boundary i_start="12484" i_stop="12620" i_length="137"/>
          </intron>
          <exon e_serial="6" e_score="0.571">
            <gDNA_exon_boundary e_start="12621" e_stop="12627" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8148" stop="8678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8148" stop="8629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8151" stop="8681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8151" stop="8629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8151" stop="8627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8154" stop="8681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8167" stop="8321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8176" stop="8678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213293" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8202" stop="8679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8202" stop="8654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8259" stop="8678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8261" stop="8681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8300" stop="8681"/>
              <exon start="10286" stop="10302"/>
              <exon start="10378" stop="10405"/>
              <exon start="11197" stop="11246"/>
              <exon start="12459" stop="12483"/>
              <exon start="12621" stop="12627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8336" stop="8678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221814" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8385" stop="8623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722731" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTT : AAAGAAAATAGAAAAAA : AAAATACAACAAAAAAAGGAAAAAAGAA : AAAGTACAAGTTCTTCTGTTGTGCCCTTCTTGTCCACATTGTCCACAACA : ATCAAAATTGGGGATTGGATTTAAT : GGACAAA</gDNA_template>
            <first_frame> K  M  A  K  S  Y  S  T  M  I  F  L  L  F  A  L  I  I  T  V  Q  I  A  T  I  N  A  A  E  T  P  E  V  I  C  K  V  T  I  N  D  L  M  L  C  L  P  A  V  M  G  K  R  P  P  K  P  T  P  D  C  C  A  V  L  R  K  A  D  L  Q  C  M  C  N  Q  K  S  E  L  G  K  F  G  I  S  P  E  A  A  M  N  L  P  K  Q  C  K  I  K  V  P  D  G  C  *  H  L  R  T  L  Y  S  L  Q  F  L  L  V  G  F  *  C  V  C  *  R  S  V  G  T  N  *  E  K  R  A  C  I  F  T  *  F  C  F  E  L  F  R  F  T  L  *  S  L  T  F  F  F  F  M  C  V  C  N  F  W  Y  L  R  I  *  I  N  F  L  *  V  :  K  E  N  R  K  K :   K  Y  N  K  K  R  K  K  E  :  K  V  Q  V  L  L  L  C  P  S  C  P  H  C  P  Q  Q :   S  K  L  G  I  G  F  N  :  G  Q  </first_frame>
            <second_frame>  K  W  L  N  H  I  V  Q  *  F  F  C  F  L  H  *  L  S  Q  Y  K  L  Q  Q  *  M  L  Q  K  H  Q  K  L  F  A  R  S  Q  S  M  T  L  C  Y  V  Y  L  Q  *  W  G  R  D  L  R  N  R  R  R  I  V  A  Q  C  Y  A  R  L  I  Y  S  V  C  A  T  R  N  L  S  W  G  N  L  E  S  V  L  K  L  Q  *  I  C  L  S  N  V  K  L  R  F  P  M  D  V  N  I  C  V  H  S  I  L  S  N  F  Y  L  W  D  F  S  A  Y  A  R  E  V  L  G  L  I  K  K  K  E  H  V  F  L  P  D  F  V  L  N  C  F  A  S  L  C  E  V  *  H  F  F  F  L  C  A  F  V  I  S  G  I  *  E  F  K  *  T  F  F  E  L :   K  K  I  E  K   : K  N  T  T  K  K  G  K  K  K :   K  Y  K  F  F  C  C  A  L  L  V  H  I  V  H  N   : N  Q  N  W  G  L  D  L  M :   D  K </second_frame>
            <third_frame>   N  G  *  I  I  *  Y  N  D  F  F  A  F  C  T  D  Y  H  S  T  N  C  N  N  K  C  C  R  N  T  R  S  Y  L  Q  G  H  N  Q  *  P  Y  A  M  F  T  C  S  N  G  E  E  T  S  E  T  D  A  G  L  L  R  S  A  T  Q  G  *  F  T  V  Y  V  Q  P  E  I  *  V  G  E  I  W  N  Q  S  *  S  C  N  E  S  A  *  A  M  *  N  *  G  S  R  W  M  L  T  S  A  Y  T  L  F  S  P  I  S  T  C  G  I  L  V  R  M  L  E  K  C  W  D  *  L  R  K  K  S  M  Y  F  Y  L  I  L  F  *  I  V  S  L  H  F  V  K  F  D  I  F  F  F  Y  V  R  L  *  F  L  V  F  E  N  L  N  K  L  S  L  S   : *  R  K  *  K  K  :  K  I  Q  Q  K  K  E  K  R   : K  S  T  S  S  S  V  V  P  F  L  S  T  L  S  T  T  :  I  K  I  G  D  W  I  *   : W  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8148" stop="8465"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMAKSYSTMIFLLFALIITVQIATINAAETPEVICKVTINDLMLCLPAVMGKRPPKPTPDCCAVLRKADLQCMCNQKSELGKFGISPEAAMNLPKQCKIKVPDGC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="16198" PGL_stop="8300"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16198" e_stop="16184"/>
            <exon e_start="15641" e_stop="15619"/>
            <exon e_start="14915" e_stop="14852"/>
            <exon e_start="12958" e_stop="12930"/>
            <exon e_start="8679" e_stop="8300"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.128" acc_prob="0.000" e_score="0.867"/>
          <exon-intron don_prob="0.333" acc_prob="0.678" e_score="0.652"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.469"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.862"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.867">
            <gDNA_exon_boundary e_start="16198" e_stop="16184" e_length="15"/>
          </exon>
          <intron i_serial="1" don_prob="0.128" acc_prob="0.000">
            <gDNA_intron_boundary i_start="16183" i_stop="15642" i_length="542"/>
          </intron>
          <exon e_serial="2" e_score="0.652">
            <gDNA_exon_boundary e_start="15641" e_stop="15619" e_length="23"/>
          </exon>
          <intron i_serial="2" don_prob="0.333" acc_prob="0.678">
            <gDNA_intron_boundary i_start="15618" i_stop="14916" i_length="703"/>
          </intron>
          <exon e_serial="3" e_score="0.469">
            <gDNA_exon_boundary e_start="14915" e_stop="14852" e_length="64"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="14851" i_stop="12959" i_length="1893"/>
          </intron>
          <exon e_serial="4" e_score="0.862">
            <gDNA_exon_boundary e_start="12958" e_stop="12930" e_length="29"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12929" i_stop="8680" i_length="4250"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="8679" e_stop="8300" e_length="380"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16198" stop="16184"/>
              <exon start="15641" stop="15619"/>
              <exon start="14915" stop="14852"/>
              <exon start="12958" stop="12930"/>
              <exon start="8679" stop="8300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553151" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTATTCTTAAAA : TGTGATCCCAAAAATTGATCTTA : TTTAATTAATCTATGGACTTGGAAACTGGACTAGATACACAAGTGATTTATTTGATTTTTTTTT : TTTTGTTTTTATTTTTGTTTTTGTTTTTA : CTCAAAGAAAGTTTATTTAAATTCTCAAATACCAGAAATTACAAACGCACATAAAAAAAAAAAATGTCAAACTTCACAAAGTGAAGCGAAACAATTCAAAACAAAATCAGGTAAAAATACATGCTCTTTTTTCTTAATTAGTCCCAACACTTCTCTAGCATACGCACTAAAATCCCACAAGTAGAAATTGGAGAGAATAGAGTGTACGCAGATGTTAACATCCATCGGGAACCTTAATTTTACATTGCTTAGGCAGATTCATTGCAGCTTCAGGACTGATTCCAAATTTCCCCAACTCAGATTTCTGGTTGCACATACACTGTAAATCAGCCTTGCGTAGCACTGCGCAACAATCCGGCGTCGGTTTCGGAGGTCTCTTC</gDNA_template>
            <first_frame> L  L  F  L  K  :  C  D  P  K  N  *  S  Y :   L  I  N  L  W  T  W  K  L  D  *  I  H  K  *  F  I  *  F  F  F  :  F  C  F  Y  F  C  F  C  F  Y :   S  K  K  V  Y  L  N  S  Q  I  P  E  I  T  N  A  H  K  K  K  K  C  Q  T  S  Q  S  E  A  K  Q  F  K  T  K  S  G  K  N  T  C  S  F  F  L  I  S  P  N  T  S  L  A  Y  A  L  K  S  H  K  *  K  L  E  R  I  E  C  T  Q  M  L  T  S  I  G  N  L  N  F  T  L  L  R  Q  I  H  C  S  F  R  T  D  S  K  F  P  Q  L  R  F  L  V  A  H  T  L  *  I  S  L  A  *  H  C  A  T  I  R  R  R  F  R  R  S  L  </first_frame>
            <second_frame>  F  Y  S  *  N :   V  I  P  K  I  D  L   : I  *  L  I  Y  G  L  G  N  W  T  R  Y  T  S  D  L  F  D  F  F  F :   F  V  F  I  F  V  F  V  F   : T  Q  R  K  F  I  *  I  L  K  Y  Q  K  L  Q  T  H  I  K  K  K  N  V  K  L  H  K  V  K  R  N  N  S  K  Q  N  Q  V  K  I  H  A  L  F  S  *  L  V  P  T  L  L  *  H  T  H  *  N  P  T  S  R  N  W  R  E  *  S  V  R  R  C  *  H  P  S  G  T  L  I  L  H  C  L  G  R  F  I  A  A  S  G  L  I  P  N  F  P  N  S  D  F  W  L  H  I  H  C  K  S  A  L  R  S  T  A  Q  Q  S  G  V  G  F  G  G  L  F </second_frame>
            <third_frame>   F  I  L  K   : M  *  S  Q  K  L  I  L  :  F  N  *  S  M  D  L  E  T  G  L  D  T  Q  V  I  Y  L  I  F  F   : F  L  F  L  F  L  F  L  F  L  :  L  K  E  S  L  F  K  F  S  N  T  R  N  Y  K  R  T  *  K  K  K  M  S  N  F  T  K  *  S  E  T  I  Q  N  K  I  R  *  K  Y  M  L  F  F  L  N  *  S  Q  H  F  S  S  I  R  T  K  I  P  Q  V  E  I  G  E  N  R  V  Y  A  D  V  N  I  H  R  E  P  *  F  Y  I  A  *  A  D  S  L  Q  L  Q  D  *  F  Q  I  S  P  T  Q  I  S  G  C  T  Y  T  V  N  Q  P  C  V  A  L  R  N  N  P  A  S  V  S  E  V  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14860" stop="14852"/>
                    <exon start="12958" stop="12930"/>
                    <exon start="8679" stop="8496"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFFCFYFCFCFYSKKVYLNSQIPEITNAHKKKKCQTSQSEAKQFKTKSGKNTCSFFLISPNTSLAYALKSHK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="10416" e_stop="10385"/>
            <exon e_start="8678" e_stop="8413"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.719"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.719">
            <gDNA_exon_boundary e_start="10416" e_stop="10385" e_length="32"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="10384" i_stop="8679" i_length="1706"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="8678" e_stop="8413" e_length="266"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10416" stop="10385"/>
              <exon start="8678" stop="8413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353041" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGTTTGTTGCTTCTTTTTTCCTTTTTTTGTT : TCAAAGAAAGTTTATTTAAATTCTCAAATACCAGAAATTACAAACGCACATAAAAAAAAAAAATGTCAAACTTCACAAAGTGAAGCGAAACAATTCAAAACAAAATCAGGTAAAAATACATGCTCTTTTTTCTTAATTAGTCCCAACACTTCTCTAGCATACGCACTAAAATCCCACAAGTAGAAATTGGAGAGAATAGAGTGTACGCAGATGTTAACATCCATCGGGAACCTTAATTTTACATTGCTTAGGCAGATTCATTGCAG</gDNA_template>
            <first_frame> M  F  V  A  S  F  F  L  F  L  F :   Q  R  K  F  I  *  I  L  K  Y  Q  K  L  Q  T  H  I  K  K  K  N  V  K  L  H  K  V  K  R  N  N  S  K  Q  N  Q  V  K  I  H  A  L  F  S  *  L  V  P  T  L  L  *  H  T  H  *  N  P  T  S  R  N  W  R  E  *  S  V  R  R  C  *  H  P  S  G  T  L  I  L  H  C  L  G  R  F  I  A  </first_frame>
            <second_frame>  C  L  L  L  L  F  S  F  F  C   : F  K  E  S  L  F  K  F  S  N  T  R  N  Y  K  R  T  *  K  K  K  M  S  N  F  T  K  *  S  E  T  I  Q  N  K  I  R  *  K  Y  M  L  F  F  L  N  *  S  Q  H  F  S  S  I  R  T  K  I  P  Q  V  E  I  G  E  N  R  V  Y  A  D  V  N  I  H  R  E  P  *  F  Y  I  A  *  A  D  S  L  Q </second_frame>
            <third_frame>   V  C  C  F  F  F  P  F  F  V  :  S  K  K  V  Y  L  N  S  Q  I  P  E  I  T  N  A  H  K  K  K  K  C  Q  T  S  Q  S  E  A  K  Q  F  K  T  K  S  G  K  N  T  C  S  F  F  L  I  S  P  N  T  S  L  A  Y  A  L  K  S  H  K  *  K  L  E  R  I  E  C  T  Q  M  L  T  S  I  G  N  L  N  F  T  L  L  R  Q  I  H  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10414" stop="10385"/>
                    <exon start="8678" stop="8496"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VCCFFFPFFVSKKVYLNSQIPEITNAHKKKKCQTSQSEAKQFKTKSGKNTCSFFLISPNTSLAYALKSHK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="13584" e_stop="13537"/>
            <exon e_start="13387" e_stop="13360"/>
            <exon e_start="12961" e_stop="12931"/>
            <exon e_start="12044" e_stop="12016"/>
            <exon e_start="10413" e_stop="10378"/>
            <exon e_start="8690" e_stop="8310"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.575" e_score="0.521"/>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="0.357"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.806"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.724"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.750"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.521">
            <gDNA_exon_boundary e_start="13584" e_stop="13537" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.575">
            <gDNA_intron_boundary i_start="13536" i_stop="13388" i_length="149"/>
          </intron>
          <exon e_serial="2" e_score="0.357">
            <gDNA_exon_boundary e_start="13387" e_stop="13360" e_length="28"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="13359" i_stop="12962" i_length="398"/>
          </intron>
          <exon e_serial="3" e_score="0.806">
            <gDNA_exon_boundary e_start="12961" e_stop="12931" e_length="31"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12930" i_stop="12045" i_length="886"/>
          </intron>
          <exon e_serial="4" e_score="0.724">
            <gDNA_exon_boundary e_start="12044" e_stop="12016" e_length="29"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12015" i_stop="10414" i_length="1602"/>
          </intron>
          <exon e_serial="5" e_score="0.750">
            <gDNA_exon_boundary e_start="10413" e_stop="10378" e_length="36"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="10377" i_stop="8691" i_length="1687"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="8690" e_stop="8310" e_length="381"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13584" stop="13537"/>
              <exon start="13387" stop="13360"/>
              <exon start="12961" stop="12931"/>
              <exon start="12044" stop="12016"/>
              <exon start="10413" stop="10378"/>
              <exon start="8690" stop="8310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555084" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCAATATAAATACCAAACCCCGATAAAAATATGATGCAAGAGCTT : GCATATGGCCGCACATGGCCACGAATTA : AATTTTTGTTTTTATTTTTGTTTTTGTTTTT : TATTATTGTATCTCTTGTTTTTTTTTTCT : TTTGTTGCTTCTTTTTTCCTTTTTTTGTTGTATTTT : AACCCCAACAACTCAAAGAAAGTTTATTTAAATTCTCAAATACCAGAAATTACAAACGCACATAAAAAAAAAAAATGTCAAACTTCACAAAGTGAAGCGAAACAATTCAAAACAAAATCAGGTAAAAATACATGCTCTTTTTTCTTAATTAGTCCCAACACTTCTCTAGCATACGCACTAAAATCCCACAAGTAGAAATTGGAGAGAATAGAGTGTACGCAGATGTTAACATCCATCGGGAACCTTAATTTTACATTGCTTAGGCAGATTCATTGCAGCTTCAGGACTGATTCCAAATTTCCCCAACTCAGATTTCTGGTTGCACATACACTGTAAATCAGCCTTGCGTAGCACTGCGCAACAATCCGGCGTCGGTTTCGG</gDNA_template>
            <first_frame> V  S  I  *  I  P  N  P  D  K  N  M  M  Q  E  L  :  A  Y  G  R  T  W  P  R  I   : K  F  L  F  L  F  L  F  L  F  F :   I  I  V  S  L  V  F  F  F   : F  C  C  F  F  F  P  F  F  V  V  F   : *  P  Q  Q  L  K  E  S  L  F  K  F  S  N  T  R  N  Y  K  R  T  *  K  K  K  M  S  N  F  T  K  *  S  E  T  I  Q  N  K  I  R  *  K  Y  M  L  F  F  L  N  *  S  Q  H  F  S  S  I  R  T  K  I  P  Q  V  E  I  G  E  N  R  V  Y  A  D  V  N  I  H  R  E  P  *  F  Y  I  A  *  A  D  S  L  Q  L  Q  D  *  F  Q  I  S  P  T  Q  I  S  G  C  T  Y  T  V  N  Q  P  C  V  A  L  R  N  N  P  A  S  V  S  </first_frame>
            <second_frame>  F  Q  Y  K  Y  Q  T  P  I  K  I  *  C  K  S  L :   H  M  A  A  H  G  H  E  L  :  N  F  C  F  Y  F  C  F  C  F   : L  L  L  Y  L  L  F  F  F  S  :  F  V  A  S  F  F  L  F  L  L  Y  F  :  N  P  N  N  S  K  K  V  Y  L  N  S  Q  I  P  E  I  T  N  A  H  K  K  K  K  C  Q  T  S  Q  S  E  A  K  Q  F  K  T  K  S  G  K  N  T  C  S  F  F  L  I  S  P  N  T  S  L  A  Y  A  L  K  S  H  K  *  K  L  E  R  I  E  C  T  Q  M  L  T  S  I  G  N  L  N  F  T  L  L  R  Q  I  H  C  S  F  R  T  D  S  K  F  P  Q  L  R  F  L  V  A  H  T  L  *  I  S  L  A  *  H  C  A  T  I  R  R  R  F  R </second_frame>
            <third_frame>   F  N  I  N  T  K  P  R  *  K  Y  D  A  R  A   : C  I  W  P  H  M  A  T  N  * :   I  F  V  F  I  F  V  F  V  F  :  Y  Y  C  I  S  C  F  F  F  L :   L  L  L  L  F  S  F  F  C  C  I  L :   T  P  T  T  Q  R  K  F  I  *  I  L  K  Y  Q  K  L  Q  T  H  I  K  K  K  N  V  K  L  H  K  V  K  R  N  N  S  K  Q  N  Q  V  K  I  H  A  L  F  S  *  L  V  P  T  L  L  *  H  T  H  *  N  P  T  S  R  N  W  R  E  *  S  V  R  R  C  *  H  P  S  G  T  L  I  L  H  C  L  G  R  F  I  A  A  S  G  L  I  P  N  F  P  N  S  D  F  W  L  H  I  H  C  K  S  A  L  R  S  T  A  Q  Q  S  G  V  G  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13547" stop="13537"/>
                    <exon start="13387" stop="13360"/>
                    <exon start="12961" stop="12931"/>
                    <exon start="12044" stop="12016"/>
                    <exon start="10413" stop="10378"/>
                    <exon start="8690" stop="8496"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CKSLHMAAHGHELNFCFYFCFCFLLLYLLFFFSFVASFFLFLLYFNPNNSKKVYLNSQIPEITNAHKKKKCQTSQSEAKQFKTKSGKNTCSFFLISPNTSLAYALKSHK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="19858" PGL_stop="30263"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19858" e_stop="20194"/>
            <exon e_start="21241" e_stop="21534"/>
            <exon e_start="22644" e_stop="22759"/>
            <exon e_start="22947" e_stop="23448"/>
            <exon e_start="23565" e_stop="23603"/>
            <exon e_start="24115" e_stop="24399"/>
            <exon e_start="24907" e_stop="25046"/>
            <exon e_start="25712" e_stop="26189"/>
            <exon e_start="26445" e_stop="27135"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.985"/>
          <exon-intron don_prob="0.980" acc_prob="0.223" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.737" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.991"/>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="19858" e_stop="20194" e_length="337"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20195" i_stop="21240" i_length="1046"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21241" e_stop="21534" e_length="294"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.223">
            <gDNA_intron_boundary i_start="21535" i_stop="22643" i_length="1109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22644" e_stop="22759" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.737">
            <gDNA_intron_boundary i_start="22760" i_stop="22946" i_length="187"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22947" e_stop="23448" e_length="502"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="23449" i_stop="23564" i_length="116"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23565" e_stop="23603" e_length="39"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.978">
            <gDNA_intron_boundary i_start="23604" i_stop="24114" i_length="511"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="24115" e_stop="24399" e_length="285"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="24400" i_stop="24906" i_length="507"/>
          </intron>
          <exon e_serial="7" e_score="0.991">
            <gDNA_exon_boundary e_start="24907" e_stop="25046" e_length="140"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="25047" i_stop="25711" i_length="665"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="25712" e_stop="26189" e_length="478"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.992">
            <gDNA_intron_boundary i_start="26190" i_stop="26444" i_length="255"/>
          </intron>
          <exon e_serial="9" e_score="0.997">
            <gDNA_exon_boundary e_start="26445" e_stop="27135" e_length="691"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19858" stop="20194"/>
              <exon start="21241" stop="21439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19889" stop="20194"/>
              <exon start="21241" stop="21534"/>
              <exon start="22644" stop="22759"/>
              <exon start="22947" stop="23048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19892" stop="20194"/>
              <exon start="21241" stop="21534"/>
              <exon start="22644" stop="22759"/>
              <exon start="22947" stop="23006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19894" stop="20194"/>
              <exon start="21241" stop="21478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19898" stop="20194"/>
              <exon start="21241" stop="21303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19903" stop="20194"/>
              <exon start="21241" stop="21534"/>
              <exon start="22644" stop="22669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19905" stop="20194"/>
              <exon start="21241" stop="21477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19905" stop="20194"/>
              <exon start="21241" stop="21449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19907" stop="20194"/>
              <exon start="21241" stop="21418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19907" stop="20194"/>
              <exon start="21241" stop="21373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19908" stop="20194"/>
              <exon start="21241" stop="21534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19909" stop="20194"/>
              <exon start="21241" stop="21534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19909" stop="20194"/>
              <exon start="21241" stop="21534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19911" stop="20194"/>
              <exon start="21241" stop="21501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19916" stop="20194"/>
              <exon start="21241" stop="21278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19918" stop="20194"/>
              <exon start="21241" stop="21534"/>
              <exon start="22644" stop="22742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19919" stop="20194"/>
              <exon start="21241" stop="21500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19920" stop="20194"/>
              <exon start="21241" stop="21534"/>
              <exon start="22644" stop="22759"/>
              <exon start="22947" stop="23001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19922" stop="20194"/>
              <exon start="21241" stop="21511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19923" stop="20194"/>
              <exon start="21241" stop="21534"/>
              <exon start="22644" stop="22707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19924" stop="20194"/>
              <exon start="21241" stop="21534"/>
              <exon start="22644" stop="22759"/>
              <exon start="22947" stop="22959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19941" stop="20194"/>
              <exon start="21241" stop="21445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19945" stop="20194"/>
              <exon start="21241" stop="21534"/>
              <exon start="22644" stop="22759"/>
              <exon start="22947" stop="23158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19964" stop="20194"/>
              <exon start="21241" stop="21534"/>
              <exon start="22644" stop="22759"/>
              <exon start="22947" stop="23032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20058" stop="20194"/>
              <exon start="21241" stop="21534"/>
              <exon start="22644" stop="22759"/>
              <exon start="22947" stop="23031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20082" stop="20194"/>
              <exon start="21241" stop="21534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20169" stop="20194"/>
              <exon start="21241" stop="21534"/>
              <exon start="22644" stop="22759"/>
              <exon start="22947" stop="23075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21501" stop="21534"/>
              <exon start="22644" stop="22759"/>
              <exon start="22947" stop="23389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22744" stop="22759"/>
              <exon start="22947" stop="23448"/>
              <exon start="23565" stop="23603"/>
              <exon start="24115" stop="24399"/>
              <exon start="24907" stop="24971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22744" stop="22759"/>
              <exon start="22947" stop="23448"/>
              <exon start="23565" stop="23603"/>
              <exon start="24115" stop="24399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23399" stop="23448"/>
              <exon start="23565" stop="23603"/>
              <exon start="24115" stop="24399"/>
              <exon start="24907" stop="25046"/>
              <exon start="25712" stop="25756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23399" stop="23448"/>
              <exon start="23565" stop="23603"/>
              <exon start="24115" stop="24298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23404" stop="23448"/>
              <exon start="23565" stop="23603"/>
              <exon start="24115" stop="24326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23405" stop="23448"/>
              <exon start="23565" stop="23603"/>
              <exon start="24115" stop="24399"/>
              <exon start="24907" stop="25017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23405" stop="23448"/>
              <exon start="23565" stop="23603"/>
              <exon start="24115" stop="24399"/>
              <exon start="24907" stop="25010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24115" stop="24399"/>
              <exon start="24907" stop="25046"/>
              <exon start="25712" stop="26029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24955" stop="25046"/>
              <exon start="25712" stop="26096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24957" stop="25046"/>
              <exon start="25712" stop="26189"/>
              <exon start="26445" stop="26616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24960" stop="25046"/>
              <exon start="25712" stop="26189"/>
              <exon start="26445" stop="26585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24982" stop="25046"/>
              <exon start="25712" stop="26189"/>
              <exon start="26445" stop="26760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25726" stop="26189"/>
              <exon start="26445" stop="26563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25836" stop="26189"/>
              <exon start="26445" stop="26824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25848" stop="26189"/>
              <exon start="26445" stop="26725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25960" stop="26189"/>
              <exon start="26445" stop="27023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26015" stop="26189"/>
              <exon start="26445" stop="27078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26015" stop="26189"/>
              <exon start="26445" stop="27074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26090" stop="26189"/>
              <exon start="26445" stop="26888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26165" stop="26189"/>
              <exon start="26445" stop="26869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26176" stop="26189"/>
              <exon start="26445" stop="26868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26445" stop="26925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26495" stop="26969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26513" stop="27135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAATATTTGCCAGCCTGAAAATAGCCCACACCCCTCAAAGGCAAGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG : GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT : TGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAG : CATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCTAGAAGTGTTATTGCCAACTATATTTCATCACCTGAGGTGAATTTCCTGCGAAGTATCGCATCGCGATTGAATCCACGAGTGACAAAGCGCGTTTTCCGGTTTCTCAACGAAGATGATATTGAGCCATCAACAAGTCAAACATATGGTTCTCTAGTGAAGAATCTCACATTTGTTAAAACCTTTGCCGCTGGGATTCTTGTTCCCAAACACTATATCTGGCCAACGGACAGCAGCTTGTACTTGCAGCCACATACATCGGTTGTTTCGGACGCTCATAAGGAAGGACTTGAGATTTATGCAGCCGACTTTGTTAATGATGTACCATTTGCTTATAATTATAGCTATGATCCTGTAGCTGAGTATTTATCCTTTATAGACAACGGTGAGTTCTCGGTGGACGGAGTGTTATCTGACTTCCCAATGTCTCCATCTGCGTCAGTAG : ATTGCTTCTCGCATTTGGGTGCGAATGATAAGCCTCAAG : TAACTCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACACGACGACTGCGGCCCAATCGCCATTCAGCGACATCGCTACCACTGCTCCAGAGCTTCAGATAACAGATGGAATACTCACCATCAACCTAAACTGGAGCGATATTCAAACGCTGAAAC : CGGTAATATCAACCCGGTATTCAGACTTTAGATTGTCACGGAATCCAAAGGCCAGAAATGTTGGAAAGTTTATGTCGTTAGCAGACTTCTTGACATTTTCCAAAACTGCTAATGTTTCTGGTATAATGATCAGCATAGAG : AATGCTGCATACCTGGCAAAGCAGGGATTAGGTGTAACTGATGCGGTTTTGGATGCCCTAAGCACAGCTGGTTACAATAATCAGACAGCTAGGAAAGTTATGATCCAATCAAATGACAGTTCTGTTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTATATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAA : GGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTTTTCCATTTTGGGTCAGATTGAGTGGGTGTCTGGGGTTTATTGCCTATTTATTTGTAAGAATTCTGTTTTGGATATAAGCAATGATCAATTTAGTTAGTATTTTTCATACACAGCCTTTTTATATTCTATTCATGTAATATAAAATTGCAAATAAATGTTGCAGACC</gDNA_template>
            <first_frame> K  N  I  C  Q  P  E  N  S  P  H  P  S  K  A  R  H  K  H  S  H  T  F  S  L  Y  L  S  A  L  K  V  S  S  T  C  Q  S  S  H  F  F  F  T  Q  I  S  *  I  S  P  Y  S  P  P  P  P  S  L  T  E  K  N  L  R  R  K  T  I  L  R  L  S  S  P  E  M  R  K  M  R  S  V  L  C  L  L  V  L  C  C  S  V  A  F  V  A  A  Q  R  S  N  N  V  T  S  K  W  K  T  L  S   : G  D  A  P  K  V  I  A  R  G  G  F  S  G  L  L  P  D  S  S  F  N  A  Y  M  L  A  Q  A  I  S  S  A  D  W  V  A  W  C  D  V  Q  L  T  K  D  G  V  G  I  C  F  P  D  I  K  L  N  N  A  S  D  I  D  T  L  Y  P  N  R  N  N  N  Y  S  V  N  G  I  P  Q  T  G  W  F  S  I  D  F  S  I  K  D  L  A  P  V  S   : L  K  Q  G  V  Y  S  R  S  P  R  F  D  G  T  P  Q  Q  I  L  T  V  Q  D  V  A  T  Q  V  K  P  P  G  L  W  L  N  I  Q  :  H  D  S  F  Y  S  Q  H  N  L  S  M  R  S  F  V  V  S  L  S  R  S  V  I  A  N  Y  I  S  S  P  E  V  N  F  L  R  S  I  A  S  R  L  N  P  R  V  T  K  R  V  F  R  F  L  N  E  D  D  I  E  P  S  T  S  Q  T  Y  G  S  L  V  K  N  L  T  F  V  K  T  F  A  A  G  I  L  V  P  K  H  Y  I  W  P  T  D  S  S  L  Y  L  Q  P  H  T  S  V  V  S  D  A  H  K  E  G  L  E  I  Y  A  A  D  F  V  N  D  V  P  F  A  Y  N  Y  S  Y  D  P  V  A  E  Y  L  S  F  I  D  N  G  E  F  S  V  D  G  V  L  S  D  F  P  M  S  P  S  A  S  V   : D  C  F  S  H  L  G  A  N  D  K  P  Q   : V  T  L  Q  I  I  A  P  Q  G  A  S  G  D  Y  P  G  C  T  D  L  A  Y  T  K  A  A  S  D  G  A  D  I  I  G  C  P  V  Q  M  T  K  D  G  I  P  F  C  L  S  S  I  N  L  I  D  T  T  T  A  A  Q  S  P  F  S  D  I  A  T  T  A  P  E  L  Q  I  T  D  G  I  L  T  I  N  L  N  W  S  D  I  Q  T  L  K   : P  V  I  S  T  R  Y  S  D  F  R  L  S  R  N  P  K  A  R  N  V  G  K  F  M  S  L  A  D  F  L  T  F  S  K  T  A  N  V  S  G  I  M  I  S  I  E  :  N  A  A  Y  L  A  K  Q  G  L  G  V  T  D  A  V  L  D  A  L  S  T  A  G  Y  N  N  Q  T  A  R  K  V  M  I  Q  S  N  D  S  S  V  L  E  E  F  K  K  S  S  Y  E  L  V  Y  L  V  D  D  N  I  S  D  I  K  N  S  T  I  L  E  I  K  T  F  A  K  S  V  V  I  T  K  K  S  V  F  P  S  E  D  A  F  I  I  G  Q  T  N  I  V  Q  K  L  Q  S  A  N  L  P  V  Y  V  R  L  F  N  N  E  F  I  S  Q  A  W  D  F  F  S  D  S  S  T  E  I  N  N  Y  V  L  G  A  G  V  D  G  L  V  T  E  Y  P  G  T  A  A  R  Y  R   : R  N  R  C  L  A  Y  K  N  L  P  P  Y  M  S  P  V  Q  P  G  S  L  L  G  L  M  T  V  Q  S  M  P  P  V  E  P  P  S  P  V  L  D  V  S  D  V  T  E  P  P  L  P  P  V  A  K  I  N  P  S  N  D  D  G  S  T  A  R  A  P  T  T  P  P  N  G  Q  S  S  V  V  A  S  I  L  M  S  S  V  A  V  L  L  A  I  F  M  V  Y  *  *  P  F  L  L  W  C  H  H  F  V  Q  F  V  L  P  S  Y  *  S  N  L  P  L  V  I  M  E  S  H  M  M  A  A  V  V  S  S  F  N  T  *  L  F  P  C  I  C  D  V  S  K  F  S  A  L  V  Y  S  L  H  S  S  S  F  L  F  F  I  P  S  L  P  F  F  F  P  F  W  V  R  L  S  G  C  L  G  F  I  A  Y  L  F  V  R  I  L  F  W  I  *  A  M  I  N  L  V  S  I  F  H  T  Q  P  F  Y  I  L  F  M  *  Y  K  I  A  N  K  C  C  R   </first_frame>
            <second_frame>  K  I  F  A  S  L  K  I  A  H  T  P  Q  R  Q  G  T  N  T  H  T  L  S  L  S  I  Y  L  L  S  K  S  P  Q  L  V  N  H  H  T  F  S  S  H  K  S  A  E  S  L  H  I  L  L  H  L  R  H  *  R  K  K  I  Y  A  G  K  R  F  S  G  *  A  R  R  K  *  G  K  C  V  L  F  Y  V  S  W  Y  F  V  A  Q  L  H  L  L  L  L  K  D  L  T  M  *  P  L  N  G  K  H  *  A  :  E  M  H  Q  K  S  *  L  V  E  D  F  L  G  Y  F  L  I  Q  A  L  M  P  T  C  W  H  K  Q  L  A  R  L  I  G  L  L  G  V  M  F  N  S  Q  K  T  G  L  A  F  V  F  L  I  S  S  L  T  M  L  L  T  S  I  L  S  T  Q  T  G  I  T  T  T  R  *  M  E  F  L  R  Q  D  G  F  L  *  I  S  A  S  R  I  W  H  L  S  A  :  *  N  K  E  C  I  R  G  R  L  D  L  M  A  L  P  S  K  F  L  L  S  R  M  *  L  P  K  S  N  L  Q  D  Y  G  *  I  S  S :   M  I  P  S  T  A  S  T  I  *  V  *  E  A  L  L  F  P  Y  L  E  V  L  L  P  T  I  F  H  H  L  R  *  I  S  C  E  V  S  H  R  D  *  I  H  E  *  Q  S  A  F  S  G  F  S  T  K  M  I  L  S  H  Q  Q  V  K  H  M  V  L  *  *  R  I  S  H  L  L  K  P  L  P  L  G  F  L  F  P  N  T  I  S  G  Q  R  T  A  A  C  T  C  S  H  I  H  R  L  F  R  T  L  I  R  K  D  L  R  F  M  Q  P  T  L  L  M  M  Y  H  L  L  I  I  I  A  M  I  L  *  L  S  I  Y  P  L  *  T  T  V  S  S  R  W  T  E  C  Y  L  T  S  Q  C  L  H  L  R  Q  *  :  I  A  S  R  I  W  V  R  M  I  S  L  K  :  *  L  F  R  L  S  H  L  K  E  Q  V  V  T  I  L  V  V  Q  I  *  H  I  Q  K  L  L  P  M  V  Q  I  L  L  A  V  L  S  K  *  Q  K  M  E  Y  P  S  A  L  V  R  *  I  *  *  T  R  R  L  R  P  N  R  H  S  A  T  S  L  P  L  L  Q  S  F  R  *  Q  M  E  Y  S  P  S  T  *  T  G  A  I  F  K  R  *  N  :  R  *  Y  Q  P  G  I  Q  T  L  D  C  H  G  I  Q  R  P  E  M  L  E  S  L  C  R  *  Q  T  S  *  H  F  P  K  L  L  M  F  L  V  *  *  S  A  *  R :   M  L  H  T  W  Q  S  R  D  *  V  *  L  M  R  F  W  M  P  *  A  Q  L  V  T  I  I  R  Q  L  G  K  L  *  S  N  Q  M  T  V  L  F  W  K  N  S  R  R  V  V  M  N  L  F  I  W  L  T  I  I  S  V  I  L  R  T  Q  L  Y  W  R  S  R  P  L  Q  N  L  L  S  *  P  R  N  Q  S  S  P  V  K  T  L  L  S  L  V  K  R  I  L  C  R  S  C  S  Q  Q  I  S  R  Y  M  Y  D  Y  L  I  T  S  L  Y  L  K  H  G  T  S  S  Q  I  R  L  L  R  *  T  T  M  F  L  E  L  V  L  M  V  L  L  Q  N  T  L  G  Q  R  L  D  T  E  :  G  T  V  V  *  H  T  K  T  C  H  H  I  *  A  L  F  N  L  G  V  S  W  D  S  *  L  F  S  L  C  H  Q  S  N  L  P  A  P  C  S  M  *  V  M  *  L  S  H  H  F  H  L  L  Q  R  *  T  Q  V  T  T  M  V  L  Q  L  E  L  P  L  L  L  Q  M  A  N  P  Q  L  L  L  A  F  S  *  A  Q  L  Q  F  F  *  Q  F  S  W  Y  I  D  D  H  F  Y  F  G  A  T  I  L  Y  N  L  F  C  H  L  T  D  Q  T  S  L  W  *  L  W  S  R  T  *  W  R  R  *  S  A  H  L  T  H  D  C  F  L  V  F  A  M  Y  Q  N  F  Q  L  L  F  I  L  Y  I  L  P  R  F  Y  F  S  F  L  P  S  P  F  F  F  H  F  G  S  D  *  V  G  V  W  G  L  L  P  I  Y  L  *  E  F  C  F  G  Y  K  Q  *  S  I  *  L  V  F  F  I  H  S  L  F  I  F  Y  S  C  N  I  K  L  Q  I  N  V  A  D  </second_frame>
            <third_frame>   K  Y  L  P  A  *  K  *  P  T  P  L  K  G  K  A  Q  T  L  T  H  F  L  S  L  S  I  C  S  Q  S  L  L  N  L  S  I  I  T  L  F  L  H  T  N  Q  L  N  L  S  I  F  S  S  T  S  V  T  N  G  K  K  F  T  P  E  N  D  S  P  A  E  L  A  G  N  E  E  N  A  F  C  F  M  S  P  G  T  L  L  L  S  C  I  C  C  C  S  K  I  *  Q  C  N  L  *  M  E  N  T  E  R :   R  C  T  K  S  H  S  S  W  R  I  F  W  V  T  S  *  F  K  L  *  C  L  H  V  G  T  S  N  *  L  G  *  L  G  C  L  V  *  C  S  T  H  K  R  R  G  W  H  L  F  S  *  Y  Q  A  *  Q  C  F  *  H  R  Y  S  L  P  K  Q  E  *  Q  L  L  G  E  W  N  S  S  D  R  M  V  F  Y  R  F  Q  H  Q  G  F  G  T  C  Q  L :   E  T  R  S  V  F  A  V  A  *  I  *  W  H  S  P  A  N  S  Y  C  P  G  C  S  Y  P  S  Q  T  S  R  I  M  V  E  Y  P   : A  *  F  L  L  Q  P  A  Q  S  E  Y  E  K  L  C  C  F  P  I  *  K  C  Y  C  Q  L  Y  F  I  T  *  G  E  F  P  A  K  Y  R  I  A  I  E  S  T  S  D  K  A  R  F  P  V  S  Q  R  R  *  Y  *  A  I  N  K  S  N  I  W  F  S  S  E  E  S  H  I  C  *  N  L  C  R  W  D  S  C  S  Q  T  L  Y  L  A  N  G  Q  Q  L  V  L  A  A  T  Y  I  G  C  F  G  R  S  *  G  R  T  *  D  L  C  S  R  L  C  *  *  C  T  I  C  L  *  L  *  L  *  S  C  S  *  V  F  I  L  Y  R  Q  R  *  V  L  G  G  R  S  V  I  *  L  P  N  V  S  I  C  V  S  R :   L  L  L  A  F  G  C  E  *  *  A  S  S :   N  S  S  D  Y  R  T  S  R  S  K  W  *  L  S  W  L  Y  R  F  S  I  Y  K  S  C  F  R  W  C  R  Y  Y  W  L  S  C  P  N  D  K  R  W  N  T  L  L  P  *  F  D  K  S  D  R  H  D  D  C  G  P  I  A  I  Q  R  H  R  Y  H  C  S  R  A  S  D  N  R  W  N  T  H  H  Q  P  K  L  E  R  Y  S  N  A  E  T :   G  N  I  N  P  V  F  R  L  *  I  V  T  E  S  K  G  Q  K  C  W  K  V  Y  V  V  S  R  L  L  D  I  F  Q  N  C  *  C  F  W  Y  N  D  Q  H  R   : E  C  C  I  P  G  K  A  G  I  R  C  N  *  C  G  F  G  C  P  K  H  S  W  L  Q  *  S  D  S  *  E  S  Y  D  P  I  K  *  Q  F  C  S  G  R  I  Q  E  E  *  L  *  T  C  L  F  G  *  R  *  Y  Q  *  Y  *  E  L  N  Y  I  G  D  Q  D  L  C  K  I  C  C  H  N  Q  E  I  S  L  P  Q  *  R  R  F  Y  H  W  S  N  E  Y  C  A  E  A  A  V  S  K  S  P  G  I  C  T  T  I  *  *  R  V  Y  I  S  S  M  G  L  L  L  R  F  V  Y  *  D  K  Q  L  C  S  W  S  W  C  *  W  S  C  Y  R  I  P  W  D  S  G  *  I  P  K :   E  P  L  F  S  I  Q  K  L  A  T  I  Y  E  P  C  S  T  W  E  S  P  G  T  H  D  C  S  V  Y  A  T  S  R  T  S  Q  P  R  A  R  C  K  *  C  D  *  A  T  T  S  T  C  C  K  D  K  P  K  *  R  R  W  F  Y  S  *  S  S  H  Y  S  S  K  W  P  I  L  S  C  C  *  H  S  H  E  L  S  C  S  S  S  S  N  F  H  G  I  L  M  T  I  S  T  L  V  P  P  F  C  T  I  C  F  A  I  L  L  I  K  P  P  S  G  D  Y  G  V  A  H  D  G  G  G  S  Q  L  I  *  H  M  I  V  S  L  Y  L  R  C  I  K  I  F  S  S  C  L  F  F  T  F  F  L  V  S  I  F  H  S  F  P  P  L  F  F  S  I  L  G  Q  I  E  W  V  S  G  V  Y  C  L  F  I  C  K  N  S  V  L  D  I  S  N  D  Q  F  S  *  Y  F  S  Y  T  A  F  L  Y  S  I  H  V  I  *  N  C  K  *  M  L  Q  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20002" stop="20194"/>
                    <exon start="21241" stop="21534"/>
                    <exon start="22644" stop="22759"/>
                    <exon start="22947" stop="23448"/>
                    <exon start="23565" stop="23603"/>
                    <exon start="24115" stop="24399"/>
                    <exon start="24907" stop="25046"/>
                    <exon start="25712" stop="26189"/>
                    <exon start="26445" stop="26743"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2343</number_coding_nucleotides>
                  <number_encoded_amino_acids>781</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISPYSPPPPSLTEKNLRRKTILRLSSPEMRKMRSVLCLLVLCCSVAFVAAQRSNNVTSKWKTLSGDAPKVIARGGFSGLLPDSSFNAYMLAQAISSADWVAWCDVQLTKDGVGICFPDIKLNNASDIDTLYPNRNNNYSVNGIPQTGWFSIDFSIKDLAPVSLKQGVYSRSPRFDGTPQQILTVQDVATQVKPPGLWLNIQHDSFYSQHNLSMRSFVVSLSRSVIANYISSPEVNFLRSIASRLNPRVTKRVFRFLNEDDIEPSTSQTYGSLVKNLTFVKTFAAGILVPKHYIWPTDSSLYLQPHTSVVSDAHKEGLEIYAADFVNDVPFAYNYSYDPVAEYLSFIDNGEFSVDGVLSDFPMSPSASVDCFSHLGANDKPQVTLQIIAPQGASGDYPGCTDLAYTKAASDGADIIGCPVQMTKDGIPFCLSSINLIDTTTAAQSPFSDIATTAPELQITDGILTINLNWSDIQTLKPVISTRYSDFRLSRNPKARNVGKFMSLADFLTFSKTANVSGIMISIENAAYLAKQGLGVTDAVLDALSTAGYNNQTARKVMIQSNDSSVLEEFKKSSYELVYLVDDNISDIKNSTILEIKTFAKSVVITKKSVFPSEDAFIIGQTNIVQKLQSANLPVYVRLFNNEFISQAWDFFSDSSTEINNYVLGAGVDGLVTEYPGTAARYRRNRCLAYKNLPPYMSPVQPGSLLGLMTVQSMPPVEPPSPVLDVSDVTEPPLPPVAKINPSNDDGSTARAPTTPPNGQSSVVASILMSSVAVLLAIFMVY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26863" stop="27066"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HMIVSLYLRCIKIFSSCLFFTFFLVSIFHSFPPLFFSILGQIEWVSGVYCLFICKNSVLDISNDQFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="19858" e_stop="20194"/>
            <exon e_start="21241" e_stop="21534"/>
            <exon e_start="22644" e_stop="22759"/>
            <exon e_start="22947" e_stop="23448"/>
            <exon e_start="23565" e_stop="23603"/>
            <exon e_start="24115" e_stop="24399"/>
            <exon e_start="24907" e_stop="25046"/>
            <exon e_start="25712" e_stop="26189"/>
            <exon e_start="26445" e_stop="27084"/>
            <exon e_start="27463" e_stop="27491"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.985"/>
          <exon-intron don_prob="0.980" acc_prob="0.223" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.737" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.991"/>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.148" e_score="0.997"/>
          <exon-only e_score="0.586"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="19858" e_stop="20194" e_length="337"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20195" i_stop="21240" i_length="1046"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21241" e_stop="21534" e_length="294"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.223">
            <gDNA_intron_boundary i_start="21535" i_stop="22643" i_length="1109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22644" e_stop="22759" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.737">
            <gDNA_intron_boundary i_start="22760" i_stop="22946" i_length="187"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22947" e_stop="23448" e_length="502"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="23449" i_stop="23564" i_length="116"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23565" e_stop="23603" e_length="39"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.978">
            <gDNA_intron_boundary i_start="23604" i_stop="24114" i_length="511"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="24115" e_stop="24399" e_length="285"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="24400" i_stop="24906" i_length="507"/>
          </intron>
          <exon e_serial="7" e_score="0.991">
            <gDNA_exon_boundary e_start="24907" e_stop="25046" e_length="140"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="25047" i_stop="25711" i_length="665"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="25712" e_stop="26189" e_length="478"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.992">
            <gDNA_intron_boundary i_start="26190" i_stop="26444" i_length="255"/>
          </intron>
          <exon e_serial="9" e_score="0.997">
            <gDNA_exon_boundary e_start="26445" e_stop="27084" e_length="640"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.148">
            <gDNA_intron_boundary i_start="27085" i_stop="27462" i_length="378"/>
          </intron>
          <exon e_serial="10" e_score="0.586">
            <gDNA_exon_boundary e_start="27463" e_stop="27491" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19858" stop="20194"/>
              <exon start="21241" stop="21439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19889" stop="20194"/>
              <exon start="21241" stop="21534"/>
              <exon start="22644" stop="22759"/>
              <exon start="22947" stop="23048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19892" stop="20194"/>
              <exon start="21241" stop="21534"/>
              <exon start="22644" stop="22759"/>
              <exon start="22947" stop="23006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19894" stop="20194"/>
              <exon start="21241" stop="21478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19898" stop="20194"/>
              <exon start="21241" stop="21303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19903" stop="20194"/>
              <exon start="21241" stop="21534"/>
              <exon start="22644" stop="22669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19905" stop="20194"/>
              <exon start="21241" stop="21477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19905" stop="20194"/>
              <exon start="21241" stop="21449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19907" stop="20194"/>
              <exon start="21241" stop="21418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19907" stop="20194"/>
              <exon start="21241" stop="21373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19908" stop="20194"/>
              <exon start="21241" stop="21534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19909" stop="20194"/>
              <exon start="21241" stop="21534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19909" stop="20194"/>
              <exon start="21241" stop="21534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19911" stop="20194"/>
              <exon start="21241" stop="21501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19916" stop="20194"/>
              <exon start="21241" stop="21278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19918" stop="20194"/>
              <exon start="21241" stop="21534"/>
              <exon start="22644" stop="22742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19919" stop="20194"/>
              <exon start="21241" stop="21500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19920" stop="20194"/>
              <exon start="21241" stop="21534"/>
              <exon start="22644" stop="22759"/>
              <exon start="22947" stop="23001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19922" stop="20194"/>
              <exon start="21241" stop="21511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19923" stop="20194"/>
              <exon start="21241" stop="21534"/>
              <exon start="22644" stop="22707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19924" stop="20194"/>
              <exon start="21241" stop="21534"/>
              <exon start="22644" stop="22759"/>
              <exon start="22947" stop="22959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19941" stop="20194"/>
              <exon start="21241" stop="21445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19945" stop="20194"/>
              <exon start="21241" stop="21534"/>
              <exon start="22644" stop="22759"/>
              <exon start="22947" stop="23158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19964" stop="20194"/>
              <exon start="21241" stop="21534"/>
              <exon start="22644" stop="22759"/>
              <exon start="22947" stop="23032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20058" stop="20194"/>
              <exon start="21241" stop="21534"/>
              <exon start="22644" stop="22759"/>
              <exon start="22947" stop="23031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20082" stop="20194"/>
              <exon start="21241" stop="21534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20169" stop="20194"/>
              <exon start="21241" stop="21534"/>
              <exon start="22644" stop="22759"/>
              <exon start="22947" stop="23075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21501" stop="21534"/>
              <exon start="22644" stop="22759"/>
              <exon start="22947" stop="23389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22744" stop="22759"/>
              <exon start="22947" stop="23448"/>
              <exon start="23565" stop="23603"/>
              <exon start="24115" stop="24399"/>
              <exon start="24907" stop="24971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22744" stop="22759"/>
              <exon start="22947" stop="23448"/>
              <exon start="23565" stop="23603"/>
              <exon start="24115" stop="24399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23399" stop="23448"/>
              <exon start="23565" stop="23603"/>
              <exon start="24115" stop="24399"/>
              <exon start="24907" stop="25046"/>
              <exon start="25712" stop="25756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23399" stop="23448"/>
              <exon start="23565" stop="23603"/>
              <exon start="24115" stop="24298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23404" stop="23448"/>
              <exon start="23565" stop="23603"/>
              <exon start="24115" stop="24326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23405" stop="23448"/>
              <exon start="23565" stop="23603"/>
              <exon start="24115" stop="24399"/>
              <exon start="24907" stop="25017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23405" stop="23448"/>
              <exon start="23565" stop="23603"/>
              <exon start="24115" stop="24399"/>
              <exon start="24907" stop="25010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24115" stop="24399"/>
              <exon start="24907" stop="25046"/>
              <exon start="25712" stop="26029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24955" stop="25046"/>
              <exon start="25712" stop="26096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24957" stop="25046"/>
              <exon start="25712" stop="26189"/>
              <exon start="26445" stop="26616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24960" stop="25046"/>
              <exon start="25712" stop="26189"/>
              <exon start="26445" stop="26585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24982" stop="25046"/>
              <exon start="25712" stop="26189"/>
              <exon start="26445" stop="26760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25726" stop="26189"/>
              <exon start="26445" stop="26563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25836" stop="26189"/>
              <exon start="26445" stop="26824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25848" stop="26189"/>
              <exon start="26445" stop="26725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25960" stop="26189"/>
              <exon start="26445" stop="27023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26015" stop="26189"/>
              <exon start="26445" stop="27078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26015" stop="26189"/>
              <exon start="26445" stop="27074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26090" stop="26189"/>
              <exon start="26445" stop="26888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26165" stop="26189"/>
              <exon start="26445" stop="26869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26176" stop="26189"/>
              <exon start="26445" stop="26868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26445" stop="26925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26495" stop="26969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26554" stop="27084"/>
              <exon start="27463" stop="27491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417242" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAATATTTGCCAGCCTGAAAATAGCCCACACCCCTCAAAGGCAAGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG : GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT : TGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAG : CATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCTAGAAGTGTTATTGCCAACTATATTTCATCACCTGAGGTGAATTTCCTGCGAAGTATCGCATCGCGATTGAATCCACGAGTGACAAAGCGCGTTTTCCGGTTTCTCAACGAAGATGATATTGAGCCATCAACAAGTCAAACATATGGTTCTCTAGTGAAGAATCTCACATTTGTTAAAACCTTTGCCGCTGGGATTCTTGTTCCCAAACACTATATCTGGCCAACGGACAGCAGCTTGTACTTGCAGCCACATACATCGGTTGTTTCGGACGCTCATAAGGAAGGACTTGAGATTTATGCAGCCGACTTTGTTAATGATGTACCATTTGCTTATAATTATAGCTATGATCCTGTAGCTGAGTATTTATCCTTTATAGACAACGGTGAGTTCTCGGTGGACGGAGTGTTATCTGACTTCCCAATGTCTCCATCTGCGTCAGTAG : ATTGCTTCTCGCATTTGGGTGCGAATGATAAGCCTCAAG : TAACTCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACACGACGACTGCGGCCCAATCGCCATTCAGCGACATCGCTACCACTGCTCCAGAGCTTCAGATAACAGATGGAATACTCACCATCAACCTAAACTGGAGCGATATTCAAACGCTGAAAC : CGGTAATATCAACCCGGTATTCAGACTTTAGATTGTCACGGAATCCAAAGGCCAGAAATGTTGGAAAGTTTATGTCGTTAGCAGACTTCTTGACATTTTCCAAAACTGCTAATGTTTCTGGTATAATGATCAGCATAGAG : AATGCTGCATACCTGGCAAAGCAGGGATTAGGTGTAACTGATGCGGTTTTGGATGCCCTAAGCACAGCTGGTTACAATAATCAGACAGCTAGGAAAGTTATGATCCAATCAAATGACAGTTCTGTTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTATATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAA : GGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTTTTCCATTTTGGGTCAGATTGAGTGGGTGTCTGGGGTTTATTGCCTATTTATTTGTAAGAATTCTGTTTTGGATATAAGCAATGATCAATTTAGTTAGTATTTTTCATACACAGCC : AACAAAAGAGTAAAGTTAGCACAAAGTTC</gDNA_template>
            <first_frame> K  N  I  C  Q  P  E  N  S  P  H  P  S  K  A  R  H  K  H  S  H  T  F  S  L  Y  L  S  A  L  K  V  S  S  T  C  Q  S  S  H  F  F  F  T  Q  I  S  *  I  S  P  Y  S  P  P  P  P  S  L  T  E  K  N  L  R  R  K  T  I  L  R  L  S  S  P  E  M  R  K  M  R  S  V  L  C  L  L  V  L  C  C  S  V  A  F  V  A  A  Q  R  S  N  N  V  T  S  K  W  K  T  L  S   : G  D  A  P  K  V  I  A  R  G  G  F  S  G  L  L  P  D  S  S  F  N  A  Y  M  L  A  Q  A  I  S  S  A  D  W  V  A  W  C  D  V  Q  L  T  K  D  G  V  G  I  C  F  P  D  I  K  L  N  N  A  S  D  I  D  T  L  Y  P  N  R  N  N  N  Y  S  V  N  G  I  P  Q  T  G  W  F  S  I  D  F  S  I  K  D  L  A  P  V  S   : L  K  Q  G  V  Y  S  R  S  P  R  F  D  G  T  P  Q  Q  I  L  T  V  Q  D  V  A  T  Q  V  K  P  P  G  L  W  L  N  I  Q  :  H  D  S  F  Y  S  Q  H  N  L  S  M  R  S  F  V  V  S  L  S  R  S  V  I  A  N  Y  I  S  S  P  E  V  N  F  L  R  S  I  A  S  R  L  N  P  R  V  T  K  R  V  F  R  F  L  N  E  D  D  I  E  P  S  T  S  Q  T  Y  G  S  L  V  K  N  L  T  F  V  K  T  F  A  A  G  I  L  V  P  K  H  Y  I  W  P  T  D  S  S  L  Y  L  Q  P  H  T  S  V  V  S  D  A  H  K  E  G  L  E  I  Y  A  A  D  F  V  N  D  V  P  F  A  Y  N  Y  S  Y  D  P  V  A  E  Y  L  S  F  I  D  N  G  E  F  S  V  D  G  V  L  S  D  F  P  M  S  P  S  A  S  V   : D  C  F  S  H  L  G  A  N  D  K  P  Q   : V  T  L  Q  I  I  A  P  Q  G  A  S  G  D  Y  P  G  C  T  D  L  A  Y  T  K  A  A  S  D  G  A  D  I  I  G  C  P  V  Q  M  T  K  D  G  I  P  F  C  L  S  S  I  N  L  I  D  T  T  T  A  A  Q  S  P  F  S  D  I  A  T  T  A  P  E  L  Q  I  T  D  G  I  L  T  I  N  L  N  W  S  D  I  Q  T  L  K   : P  V  I  S  T  R  Y  S  D  F  R  L  S  R  N  P  K  A  R  N  V  G  K  F  M  S  L  A  D  F  L  T  F  S  K  T  A  N  V  S  G  I  M  I  S  I  E  :  N  A  A  Y  L  A  K  Q  G  L  G  V  T  D  A  V  L  D  A  L  S  T  A  G  Y  N  N  Q  T  A  R  K  V  M  I  Q  S  N  D  S  S  V  L  E  E  F  K  K  S  S  Y  E  L  V  Y  L  V  D  D  N  I  S  D  I  K  N  S  T  I  L  E  I  K  T  F  A  K  S  V  V  I  T  K  K  S  V  F  P  S  E  D  A  F  I  I  G  Q  T  N  I  V  Q  K  L  Q  S  A  N  L  P  V  Y  V  R  L  F  N  N  E  F  I  S  Q  A  W  D  F  F  S  D  S  S  T  E  I  N  N  Y  V  L  G  A  G  V  D  G  L  V  T  E  Y  P  G  T  A  A  R  Y  R   : R  N  R  C  L  A  Y  K  N  L  P  P  Y  M  S  P  V  Q  P  G  S  L  L  G  L  M  T  V  Q  S  M  P  P  V  E  P  P  S  P  V  L  D  V  S  D  V  T  E  P  P  L  P  P  V  A  K  I  N  P  S  N  D  D  G  S  T  A  R  A  P  T  T  P  P  N  G  Q  S  S  V  V  A  S  I  L  M  S  S  V  A  V  L  L  A  I  F  M  V  Y  *  *  P  F  L  L  W  C  H  H  F  V  Q  F  V  L  P  S  Y  *  S  N  L  P  L  V  I  M  E  S  H  M  M  A  A  V  V  S  S  F  N  T  *  L  F  P  C  I  C  D  V  S  K  F  S  A  L  V  Y  S  L  H  S  S  S  F  L  F  F  I  P  S  L  P  F  F  F  P  F  W  V  R  L  S  G  C  L  G  F  I  A  Y  L  F  V  R  I  L  F  W  I  *  A  M  I  N  L  V  S  I  F  H  T  Q  P :   T  K  E  *  S  *  H  K  V  </first_frame>
            <second_frame>  K  I  F  A  S  L  K  I  A  H  T  P  Q  R  Q  G  T  N  T  H  T  L  S  L  S  I  Y  L  L  S  K  S  P  Q  L  V  N  H  H  T  F  S  S  H  K  S  A  E  S  L  H  I  L  L  H  L  R  H  *  R  K  K  I  Y  A  G  K  R  F  S  G  *  A  R  R  K  *  G  K  C  V  L  F  Y  V  S  W  Y  F  V  A  Q  L  H  L  L  L  L  K  D  L  T  M  *  P  L  N  G  K  H  *  A  :  E  M  H  Q  K  S  *  L  V  E  D  F  L  G  Y  F  L  I  Q  A  L  M  P  T  C  W  H  K  Q  L  A  R  L  I  G  L  L  G  V  M  F  N  S  Q  K  T  G  L  A  F  V  F  L  I  S  S  L  T  M  L  L  T  S  I  L  S  T  Q  T  G  I  T  T  T  R  *  M  E  F  L  R  Q  D  G  F  L  *  I  S  A  S  R  I  W  H  L  S  A  :  *  N  K  E  C  I  R  G  R  L  D  L  M  A  L  P  S  K  F  L  L  S  R  M  *  L  P  K  S  N  L  Q  D  Y  G  *  I  S  S :   M  I  P  S  T  A  S  T  I  *  V  *  E  A  L  L  F  P  Y  L  E  V  L  L  P  T  I  F  H  H  L  R  *  I  S  C  E  V  S  H  R  D  *  I  H  E  *  Q  S  A  F  S  G  F  S  T  K  M  I  L  S  H  Q  Q  V  K  H  M  V  L  *  *  R  I  S  H  L  L  K  P  L  P  L  G  F  L  F  P  N  T  I  S  G  Q  R  T  A  A  C  T  C  S  H  I  H  R  L  F  R  T  L  I  R  K  D  L  R  F  M  Q  P  T  L  L  M  M  Y  H  L  L  I  I  I  A  M  I  L  *  L  S  I  Y  P  L  *  T  T  V  S  S  R  W  T  E  C  Y  L  T  S  Q  C  L  H  L  R  Q  *  :  I  A  S  R  I  W  V  R  M  I  S  L  K  :  *  L  F  R  L  S  H  L  K  E  Q  V  V  T  I  L  V  V  Q  I  *  H  I  Q  K  L  L  P  M  V  Q  I  L  L  A  V  L  S  K  *  Q  K  M  E  Y  P  S  A  L  V  R  *  I  *  *  T  R  R  L  R  P  N  R  H  S  A  T  S  L  P  L  L  Q  S  F  R  *  Q  M  E  Y  S  P  S  T  *  T  G  A  I  F  K  R  *  N  :  R  *  Y  Q  P  G  I  Q  T  L  D  C  H  G  I  Q  R  P  E  M  L  E  S  L  C  R  *  Q  T  S  *  H  F  P  K  L  L  M  F  L  V  *  *  S  A  *  R :   M  L  H  T  W  Q  S  R  D  *  V  *  L  M  R  F  W  M  P  *  A  Q  L  V  T  I  I  R  Q  L  G  K  L  *  S  N  Q  M  T  V  L  F  W  K  N  S  R  R  V  V  M  N  L  F  I  W  L  T  I  I  S  V  I  L  R  T  Q  L  Y  W  R  S  R  P  L  Q  N  L  L  S  *  P  R  N  Q  S  S  P  V  K  T  L  L  S  L  V  K  R  I  L  C  R  S  C  S  Q  Q  I  S  R  Y  M  Y  D  Y  L  I  T  S  L  Y  L  K  H  G  T  S  S  Q  I  R  L  L  R  *  T  T  M  F  L  E  L  V  L  M  V  L  L  Q  N  T  L  G  Q  R  L  D  T  E  :  G  T  V  V  *  H  T  K  T  C  H  H  I  *  A  L  F  N  L  G  V  S  W  D  S  *  L  F  S  L  C  H  Q  S  N  L  P  A  P  C  S  M  *  V  M  *  L  S  H  H  F  H  L  L  Q  R  *  T  Q  V  T  T  M  V  L  Q  L  E  L  P  L  L  L  Q  M  A  N  P  Q  L  L  L  A  F  S  *  A  Q  L  Q  F  F  *  Q  F  S  W  Y  I  D  D  H  F  Y  F  G  A  T  I  L  Y  N  L  F  C  H  L  T  D  Q  T  S  L  W  *  L  W  S  R  T  *  W  R  R  *  S  A  H  L  T  H  D  C  F  L  V  F  A  M  Y  Q  N  F  Q  L  L  F  I  L  Y  I  L  P  R  F  Y  F  S  F  L  P  S  P  F  F  F  H  F  G  S  D  *  V  G  V  W  G  L  L  P  I  Y  L  *  E  F  C  F  G  Y  K  Q  *  S  I  *  L  V  F  F  I  H  S   : Q  Q  K  S  K  V  S  T  K  F </second_frame>
            <third_frame>   K  Y  L  P  A  *  K  *  P  T  P  L  K  G  K  A  Q  T  L  T  H  F  L  S  L  S  I  C  S  Q  S  L  L  N  L  S  I  I  T  L  F  L  H  T  N  Q  L  N  L  S  I  F  S  S  T  S  V  T  N  G  K  K  F  T  P  E  N  D  S  P  A  E  L  A  G  N  E  E  N  A  F  C  F  M  S  P  G  T  L  L  L  S  C  I  C  C  C  S  K  I  *  Q  C  N  L  *  M  E  N  T  E  R :   R  C  T  K  S  H  S  S  W  R  I  F  W  V  T  S  *  F  K  L  *  C  L  H  V  G  T  S  N  *  L  G  *  L  G  C  L  V  *  C  S  T  H  K  R  R  G  W  H  L  F  S  *  Y  Q  A  *  Q  C  F  *  H  R  Y  S  L  P  K  Q  E  *  Q  L  L  G  E  W  N  S  S  D  R  M  V  F  Y  R  F  Q  H  Q  G  F  G  T  C  Q  L :   E  T  R  S  V  F  A  V  A  *  I  *  W  H  S  P  A  N  S  Y  C  P  G  C  S  Y  P  S  Q  T  S  R  I  M  V  E  Y  P   : A  *  F  L  L  Q  P  A  Q  S  E  Y  E  K  L  C  C  F  P  I  *  K  C  Y  C  Q  L  Y  F  I  T  *  G  E  F  P  A  K  Y  R  I  A  I  E  S  T  S  D  K  A  R  F  P  V  S  Q  R  R  *  Y  *  A  I  N  K  S  N  I  W  F  S  S  E  E  S  H  I  C  *  N  L  C  R  W  D  S  C  S  Q  T  L  Y  L  A  N  G  Q  Q  L  V  L  A  A  T  Y  I  G  C  F  G  R  S  *  G  R  T  *  D  L  C  S  R  L  C  *  *  C  T  I  C  L  *  L  *  L  *  S  C  S  *  V  F  I  L  Y  R  Q  R  *  V  L  G  G  R  S  V  I  *  L  P  N  V  S  I  C  V  S  R :   L  L  L  A  F  G  C  E  *  *  A  S  S :   N  S  S  D  Y  R  T  S  R  S  K  W  *  L  S  W  L  Y  R  F  S  I  Y  K  S  C  F  R  W  C  R  Y  Y  W  L  S  C  P  N  D  K  R  W  N  T  L  L  P  *  F  D  K  S  D  R  H  D  D  C  G  P  I  A  I  Q  R  H  R  Y  H  C  S  R  A  S  D  N  R  W  N  T  H  H  Q  P  K  L  E  R  Y  S  N  A  E  T :   G  N  I  N  P  V  F  R  L  *  I  V  T  E  S  K  G  Q  K  C  W  K  V  Y  V  V  S  R  L  L  D  I  F  Q  N  C  *  C  F  W  Y  N  D  Q  H  R   : E  C  C  I  P  G  K  A  G  I  R  C  N  *  C  G  F  G  C  P  K  H  S  W  L  Q  *  S  D  S  *  E  S  Y  D  P  I  K  *  Q  F  C  S  G  R  I  Q  E  E  *  L  *  T  C  L  F  G  *  R  *  Y  Q  *  Y  *  E  L  N  Y  I  G  D  Q  D  L  C  K  I  C  C  H  N  Q  E  I  S  L  P  Q  *  R  R  F  Y  H  W  S  N  E  Y  C  A  E  A  A  V  S  K  S  P  G  I  C  T  T  I  *  *  R  V  Y  I  S  S  M  G  L  L  L  R  F  V  Y  *  D  K  Q  L  C  S  W  S  W  C  *  W  S  C  Y  R  I  P  W  D  S  G  *  I  P  K :   E  P  L  F  S  I  Q  K  L  A  T  I  Y  E  P  C  S  T  W  E  S  P  G  T  H  D  C  S  V  Y  A  T  S  R  T  S  Q  P  R  A  R  C  K  *  C  D  *  A  T  T  S  T  C  C  K  D  K  P  K  *  R  R  W  F  Y  S  *  S  S  H  Y  S  S  K  W  P  I  L  S  C  C  *  H  S  H  E  L  S  C  S  S  S  S  N  F  H  G  I  L  M  T  I  S  T  L  V  P  P  F  C  T  I  C  F  A  I  L  L  I  K  P  P  S  G  D  Y  G  V  A  H  D  G  G  G  S  Q  L  I  *  H  M  I  V  S  L  Y  L  R  C  I  K  I  F  S  S  C  L  F  F  T  F  F  L  V  S  I  F  H  S  F  P  P  L  F  F  S  I  L  G  Q  I  E  W  V  S  G  V  Y  C  L  F  I  C  K  N  S  V  L  D  I  S  N  D  Q  F  S  *  Y  F  S  Y  T  A  :  N  K  R  V  K  L  A  Q  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20002" stop="20194"/>
                    <exon start="21241" stop="21534"/>
                    <exon start="22644" stop="22759"/>
                    <exon start="22947" stop="23448"/>
                    <exon start="23565" stop="23603"/>
                    <exon start="24115" stop="24399"/>
                    <exon start="24907" stop="25046"/>
                    <exon start="25712" stop="26189"/>
                    <exon start="26445" stop="26743"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2343</number_coding_nucleotides>
                  <number_encoded_amino_acids>781</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISPYSPPPPSLTEKNLRRKTILRLSSPEMRKMRSVLCLLVLCCSVAFVAAQRSNNVTSKWKTLSGDAPKVIARGGFSGLLPDSSFNAYMLAQAISSADWVAWCDVQLTKDGVGICFPDIKLNNASDIDTLYPNRNNNYSVNGIPQTGWFSIDFSIKDLAPVSLKQGVYSRSPRFDGTPQQILTVQDVATQVKPPGLWLNIQHDSFYSQHNLSMRSFVVSLSRSVIANYISSPEVNFLRSIASRLNPRVTKRVFRFLNEDDIEPSTSQTYGSLVKNLTFVKTFAAGILVPKHYIWPTDSSLYLQPHTSVVSDAHKEGLEIYAADFVNDVPFAYNYSYDPVAEYLSFIDNGEFSVDGVLSDFPMSPSASVDCFSHLGANDKPQVTLQIIAPQGASGDYPGCTDLAYTKAASDGADIIGCPVQMTKDGIPFCLSSINLIDTTTAAQSPFSDIATTAPELQITDGILTINLNWSDIQTLKPVISTRYSDFRLSRNPKARNVGKFMSLADFLTFSKTANVSGIMISIENAAYLAKQGLGVTDAVLDALSTAGYNNQTARKVMIQSNDSSVLEEFKKSSYELVYLVDDNISDIKNSTILEIKTFAKSVVITKKSVFPSEDAFIIGQTNIVQKLQSANLPVYVRLFNNEFISQAWDFFSDSSTEINNYVLGAGVDGLVTEYPGTAARYRRNRCLAYKNLPPYMSPVQPGSLLGLMTVQSMPPVEPPSPVLDVSDVTEPPLPPVAKINPSNDDGSTARAPTTPPNGQSSVVASILMSSVAVLLAIFMVY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26863" stop="27066"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HMIVSLYLRCIKIFSSCLFFTFFLVSIFHSFPPLFFSILGQIEWVSGVYCLFICKNSVLDISNDQFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
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            <exon e_start="25712" e_stop="26189"/>
            <exon e_start="26445" e_stop="27079"/>
            <exon e_start="30234" e_stop="30263"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
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          <exon-intron don_prob="0.980" acc_prob="0.223" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.737" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.991"/>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.945" e_score="0.997"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="19858" e_stop="20194" e_length="337"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
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          </intron>
          <exon e_serial="2" e_score="1.000">
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          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.223">
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          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22644" e_stop="22759" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.737">
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          </intron>
          <exon e_serial="4" e_score="1.000">
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          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.992">
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          </intron>
          <exon e_serial="5" e_score="1.000">
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          </intron>
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          <intron i_serial="6" don_prob="0.999" acc_prob="0.981">
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          </intron>
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          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.996">
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          </intron>
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          </intron>
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          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
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          <PGS_line>
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            <referenceDNA id="SGN-E738857" strand="+"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315692" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E310657" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E312685" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E324257" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E305177" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E305964" strand="+"/>
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            <referenceDNA id="SGN-E442992" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E314560" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E207397" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19916" stop="20194"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337990" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E373208" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E307201" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E737638" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19922" stop="20194"/>
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            <referenceDNA id="SGN-E444515" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19923" stop="20194"/>
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              <exon start="22644" stop="22707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311591" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19924" stop="20194"/>
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            <referenceDNA id="SGN-E334593" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E335566" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E703955" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E410148" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20058" stop="20194"/>
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            <referenceDNA id="SGN-E417243" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E547956" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E298233" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26165" stop="26189"/>
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            <referenceDNA id="SGN-E311051" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
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            <referenceDNA id="SGN-E338255" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26495" stop="26969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294986" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26552" stop="27079"/>
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            <referenceDNA id="SGN-E440704" strand="-"/>
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        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAATATTTGCCAGCCTGAAAATAGCCCACACCCCTCAAAGGCAAGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG : GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT : TGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAG : CATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCTAGAAGTGTTATTGCCAACTATATTTCATCACCTGAGGTGAATTTCCTGCGAAGTATCGCATCGCGATTGAATCCACGAGTGACAAAGCGCGTTTTCCGGTTTCTCAACGAAGATGATATTGAGCCATCAACAAGTCAAACATATGGTTCTCTAGTGAAGAATCTCACATTTGTTAAAACCTTTGCCGCTGGGATTCTTGTTCCCAAACACTATATCTGGCCAACGGACAGCAGCTTGTACTTGCAGCCACATACATCGGTTGTTTCGGACGCTCATAAGGAAGGACTTGAGATTTATGCAGCCGACTTTGTTAATGATGTACCATTTGCTTATAATTATAGCTATGATCCTGTAGCTGAGTATTTATCCTTTATAGACAACGGTGAGTTCTCGGTGGACGGAGTGTTATCTGACTTCCCAATGTCTCCATCTGCGTCAGTAG : ATTGCTTCTCGCATTTGGGTGCGAATGATAAGCCTCAAG : TAACTCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACACGACGACTGCGGCCCAATCGCCATTCAGCGACATCGCTACCACTGCTCCAGAGCTTCAGATAACAGATGGAATACTCACCATCAACCTAAACTGGAGCGATATTCAAACGCTGAAAC : CGGTAATATCAACCCGGTATTCAGACTTTAGATTGTCACGGAATCCAAAGGCCAGAAATGTTGGAAAGTTTATGTCGTTAGCAGACTTCTTGACATTTTCCAAAACTGCTAATGTTTCTGGTATAATGATCAGCATAGAG : AATGCTGCATACCTGGCAAAGCAGGGATTAGGTGTAACTGATGCGGTTTTGGATGCCCTAAGCACAGCTGGTTACAATAATCAGACAGCTAGGAAAGTTATGATCCAATCAAATGACAGTTCTGTTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTATATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAA : GGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTTTTCCATTTTGGGTCAGATTGAGTGGGTGTCTGGGGTTTATTGCCTATTTATTTGTAAGAATTCTGTTTTGGATATAAGCAATGATCAATTTAGTTAGTATTTTTCATACA : GATAATGAACAAAAAAAAAAAAAGAAAGGA</gDNA_template>
            <first_frame> K  N  I  C  Q  P  E  N  S  P  H  P  S  K  A  R  H  K  H  S  H  T  F  S  L  Y  L  S  A  L  K  V  S  S  T  C  Q  S  S  H  F  F  F  T  Q  I  S  *  I  S  P  Y  S  P  P  P  P  S  L  T  E  K  N  L  R  R  K  T  I  L  R  L  S  S  P  E  M  R  K  M  R  S  V  L  C  L  L  V  L  C  C  S  V  A  F  V  A  A  Q  R  S  N  N  V  T  S  K  W  K  T  L  S   : G  D  A  P  K  V  I  A  R  G  G  F  S  G  L  L  P  D  S  S  F  N  A  Y  M  L  A  Q  A  I  S  S  A  D  W  V  A  W  C  D  V  Q  L  T  K  D  G  V  G  I  C  F  P  D  I  K  L  N  N  A  S  D  I  D  T  L  Y  P  N  R  N  N  N  Y  S  V  N  G  I  P  Q  T  G  W  F  S  I  D  F  S  I  K  D  L  A  P  V  S   : L  K  Q  G  V  Y  S  R  S  P  R  F  D  G  T  P  Q  Q  I  L  T  V  Q  D  V  A  T  Q  V  K  P  P  G  L  W  L  N  I  Q  :  H  D  S  F  Y  S  Q  H  N  L  S  M  R  S  F  V  V  S  L  S  R  S  V  I  A  N  Y  I  S  S  P  E  V  N  F  L  R  S  I  A  S  R  L  N  P  R  V  T  K  R  V  F  R  F  L  N  E  D  D  I  E  P  S  T  S  Q  T  Y  G  S  L  V  K  N  L  T  F  V  K  T  F  A  A  G  I  L  V  P  K  H  Y  I  W  P  T  D  S  S  L  Y  L  Q  P  H  T  S  V  V  S  D  A  H  K  E  G  L  E  I  Y  A  A  D  F  V  N  D  V  P  F  A  Y  N  Y  S  Y  D  P  V  A  E  Y  L  S  F  I  D  N  G  E  F  S  V  D  G  V  L  S  D  F  P  M  S  P  S  A  S  V   : D  C  F  S  H  L  G  A  N  D  K  P  Q   : V  T  L  Q  I  I  A  P  Q  G  A  S  G  D  Y  P  G  C  T  D  L  A  Y  T  K  A  A  S  D  G  A  D  I  I  G  C  P  V  Q  M  T  K  D  G  I  P  F  C  L  S  S  I  N  L  I  D  T  T  T  A  A  Q  S  P  F  S  D  I  A  T  T  A  P  E  L  Q  I  T  D  G  I  L  T  I  N  L  N  W  S  D  I  Q  T  L  K   : P  V  I  S  T  R  Y  S  D  F  R  L  S  R  N  P  K  A  R  N  V  G  K  F  M  S  L  A  D  F  L  T  F  S  K  T  A  N  V  S  G  I  M  I  S  I  E  :  N  A  A  Y  L  A  K  Q  G  L  G  V  T  D  A  V  L  D  A  L  S  T  A  G  Y  N  N  Q  T  A  R  K  V  M  I  Q  S  N  D  S  S  V  L  E  E  F  K  K  S  S  Y  E  L  V  Y  L  V  D  D  N  I  S  D  I  K  N  S  T  I  L  E  I  K  T  F  A  K  S  V  V  I  T  K  K  S  V  F  P  S  E  D  A  F  I  I  G  Q  T  N  I  V  Q  K  L  Q  S  A  N  L  P  V  Y  V  R  L  F  N  N  E  F  I  S  Q  A  W  D  F  F  S  D  S  S  T  E  I  N  N  Y  V  L  G  A  G  V  D  G  L  V  T  E  Y  P  G  T  A  A  R  Y  R   : R  N  R  C  L  A  Y  K  N  L  P  P  Y  M  S  P  V  Q  P  G  S  L  L  G  L  M  T  V  Q  S  M  P  P  V  E  P  P  S  P  V  L  D  V  S  D  V  T  E  P  P  L  P  P  V  A  K  I  N  P  S  N  D  D  G  S  T  A  R  A  P  T  T  P  P  N  G  Q  S  S  V  V  A  S  I  L  M  S  S  V  A  V  L  L  A  I  F  M  V  Y  *  *  P  F  L  L  W  C  H  H  F  V  Q  F  V  L  P  S  Y  *  S  N  L  P  L  V  I  M  E  S  H  M  M  A  A  V  V  S  S  F  N  T  *  L  F  P  C  I  C  D  V  S  K  F  S  A  L  V  Y  S  L  H  S  S  S  F  L  F  F  I  P  S  L  P  F  F  F  P  F  W  V  R  L  S  G  C  L  G  F  I  A  Y  L  F  V  R  I  L  F  W  I  *  A  M  I  N  L  V  S  I  F  H  T  :  D  N  E  Q  K  K  K  K  K  G </first_frame>
            <second_frame>  K  I  F  A  S  L  K  I  A  H  T  P  Q  R  Q  G  T  N  T  H  T  L  S  L  S  I  Y  L  L  S  K  S  P  Q  L  V  N  H  H  T  F  S  S  H  K  S  A  E  S  L  H  I  L  L  H  L  R  H  *  R  K  K  I  Y  A  G  K  R  F  S  G  *  A  R  R  K  *  G  K  C  V  L  F  Y  V  S  W  Y  F  V  A  Q  L  H  L  L  L  L  K  D  L  T  M  *  P  L  N  G  K  H  *  A  :  E  M  H  Q  K  S  *  L  V  E  D  F  L  G  Y  F  L  I  Q  A  L  M  P  T  C  W  H  K  Q  L  A  R  L  I  G  L  L  G  V  M  F  N  S  Q  K  T  G  L  A  F  V  F  L  I  S  S  L  T  M  L  L  T  S  I  L  S  T  Q  T  G  I  T  T  T  R  *  M  E  F  L  R  Q  D  G  F  L  *  I  S  A  S  R  I  W  H  L  S  A  :  *  N  K  E  C  I  R  G  R  L  D  L  M  A  L  P  S  K  F  L  L  S  R  M  *  L  P  K  S  N  L  Q  D  Y  G  *  I  S  S :   M  I  P  S  T  A  S  T  I  *  V  *  E  A  L  L  F  P  Y  L  E  V  L  L  P  T  I  F  H  H  L  R  *  I  S  C  E  V  S  H  R  D  *  I  H  E  *  Q  S  A  F  S  G  F  S  T  K  M  I  L  S  H  Q  Q  V  K  H  M  V  L  *  *  R  I  S  H  L  L  K  P  L  P  L  G  F  L  F  P  N  T  I  S  G  Q  R  T  A  A  C  T  C  S  H  I  H  R  L  F  R  T  L  I  R  K  D  L  R  F  M  Q  P  T  L  L  M  M  Y  H  L  L  I  I  I  A  M  I  L  *  L  S  I  Y  P  L  *  T  T  V  S  S  R  W  T  E  C  Y  L  T  S  Q  C  L  H  L  R  Q  *  :  I  A  S  R  I  W  V  R  M  I  S  L  K  :  *  L  F  R  L  S  H  L  K  E  Q  V  V  T  I  L  V  V  Q  I  *  H  I  Q  K  L  L  P  M  V  Q  I  L  L  A  V  L  S  K  *  Q  K  M  E  Y  P  S  A  L  V  R  *  I  *  *  T  R  R  L  R  P  N  R  H  S  A  T  S  L  P  L  L  Q  S  F  R  *  Q  M  E  Y  S  P  S  T  *  T  G  A  I  F  K  R  *  N  :  R  *  Y  Q  P  G  I  Q  T  L  D  C  H  G  I  Q  R  P  E  M  L  E  S  L  C  R  *  Q  T  S  *  H  F  P  K  L  L  M  F  L  V  *  *  S  A  *  R :   M  L  H  T  W  Q  S  R  D  *  V  *  L  M  R  F  W  M  P  *  A  Q  L  V  T  I  I  R  Q  L  G  K  L  *  S  N  Q  M  T  V  L  F  W  K  N  S  R  R  V  V  M  N  L  F  I  W  L  T  I  I  S  V  I  L  R  T  Q  L  Y  W  R  S  R  P  L  Q  N  L  L  S  *  P  R  N  Q  S  S  P  V  K  T  L  L  S  L  V  K  R  I  L  C  R  S  C  S  Q  Q  I  S  R  Y  M  Y  D  Y  L  I  T  S  L  Y  L  K  H  G  T  S  S  Q  I  R  L  L  R  *  T  T  M  F  L  E  L  V  L  M  V  L  L  Q  N  T  L  G  Q  R  L  D  T  E  :  G  T  V  V  *  H  T  K  T  C  H  H  I  *  A  L  F  N  L  G  V  S  W  D  S  *  L  F  S  L  C  H  Q  S  N  L  P  A  P  C  S  M  *  V  M  *  L  S  H  H  F  H  L  L  Q  R  *  T  Q  V  T  T  M  V  L  Q  L  E  L  P  L  L  L  Q  M  A  N  P  Q  L  L  L  A  F  S  *  A  Q  L  Q  F  F  *  Q  F  S  W  Y  I  D  D  H  F  Y  F  G  A  T  I  L  Y  N  L  F  C  H  L  T  D  Q  T  S  L  W  *  L  W  S  R  T  *  W  R  R  *  S  A  H  L  T  H  D  C  F  L  V  F  A  M  Y  Q  N  F  Q  L  L  F  I  L  Y  I  L  P  R  F  Y  F  S  F  L  P  S  P  F  F  F  H  F  G  S  D  *  V  G  V  W  G  L  L  P  I  Y  L  *  E  F  C  F  G  Y  K  Q  *  S  I  *  L  V  F  F  I  Q :   I  M  N  K  K  K  K  R  K   </second_frame>
            <third_frame>   K  Y  L  P  A  *  K  *  P  T  P  L  K  G  K  A  Q  T  L  T  H  F  L  S  L  S  I  C  S  Q  S  L  L  N  L  S  I  I  T  L  F  L  H  T  N  Q  L  N  L  S  I  F  S  S  T  S  V  T  N  G  K  K  F  T  P  E  N  D  S  P  A  E  L  A  G  N  E  E  N  A  F  C  F  M  S  P  G  T  L  L  L  S  C  I  C  C  C  S  K  I  *  Q  C  N  L  *  M  E  N  T  E  R :   R  C  T  K  S  H  S  S  W  R  I  F  W  V  T  S  *  F  K  L  *  C  L  H  V  G  T  S  N  *  L  G  *  L  G  C  L  V  *  C  S  T  H  K  R  R  G  W  H  L  F  S  *  Y  Q  A  *  Q  C  F  *  H  R  Y  S  L  P  K  Q  E  *  Q  L  L  G  E  W  N  S  S  D  R  M  V  F  Y  R  F  Q  H  Q  G  F  G  T  C  Q  L :   E  T  R  S  V  F  A  V  A  *  I  *  W  H  S  P  A  N  S  Y  C  P  G  C  S  Y  P  S  Q  T  S  R  I  M  V  E  Y  P   : A  *  F  L  L  Q  P  A  Q  S  E  Y  E  K  L  C  C  F  P  I  *  K  C  Y  C  Q  L  Y  F  I  T  *  G  E  F  P  A  K  Y  R  I  A  I  E  S  T  S  D  K  A  R  F  P  V  S  Q  R  R  *  Y  *  A  I  N  K  S  N  I  W  F  S  S  E  E  S  H  I  C  *  N  L  C  R  W  D  S  C  S  Q  T  L  Y  L  A  N  G  Q  Q  L  V  L  A  A  T  Y  I  G  C  F  G  R  S  *  G  R  T  *  D  L  C  S  R  L  C  *  *  C  T  I  C  L  *  L  *  L  *  S  C  S  *  V  F  I  L  Y  R  Q  R  *  V  L  G  G  R  S  V  I  *  L  P  N  V  S  I  C  V  S  R :   L  L  L  A  F  G  C  E  *  *  A  S  S :   N  S  S  D  Y  R  T  S  R  S  K  W  *  L  S  W  L  Y  R  F  S  I  Y  K  S  C  F  R  W  C  R  Y  Y  W  L  S  C  P  N  D  K  R  W  N  T  L  L  P  *  F  D  K  S  D  R  H  D  D  C  G  P  I  A  I  Q  R  H  R  Y  H  C  S  R  A  S  D  N  R  W  N  T  H  H  Q  P  K  L  E  R  Y  S  N  A  E  T :   G  N  I  N  P  V  F  R  L  *  I  V  T  E  S  K  G  Q  K  C  W  K  V  Y  V  V  S  R  L  L  D  I  F  Q  N  C  *  C  F  W  Y  N  D  Q  H  R   : E  C  C  I  P  G  K  A  G  I  R  C  N  *  C  G  F  G  C  P  K  H  S  W  L  Q  *  S  D  S  *  E  S  Y  D  P  I  K  *  Q  F  C  S  G  R  I  Q  E  E  *  L  *  T  C  L  F  G  *  R  *  Y  Q  *  Y  *  E  L  N  Y  I  G  D  Q  D  L  C  K  I  C  C  H  N  Q  E  I  S  L  P  Q  *  R  R  F  Y  H  W  S  N  E  Y  C  A  E  A  A  V  S  K  S  P  G  I  C  T  T  I  *  *  R  V  Y  I  S  S  M  G  L  L  L  R  F  V  Y  *  D  K  Q  L  C  S  W  S  W  C  *  W  S  C  Y  R  I  P  W  D  S  G  *  I  P  K :   E  P  L  F  S  I  Q  K  L  A  T  I  Y  E  P  C  S  T  W  E  S  P  G  T  H  D  C  S  V  Y  A  T  S  R  T  S  Q  P  R  A  R  C  K  *  C  D  *  A  T  T  S  T  C  C  K  D  K  P  K  *  R  R  W  F  Y  S  *  S  S  H  Y  S  S  K  W  P  I  L  S  C  C  *  H  S  H  E  L  S  C  S  S  S  S  N  F  H  G  I  L  M  T  I  S  T  L  V  P  P  F  C  T  I  C  F  A  I  L  L  I  K  P  P  S  G  D  Y  G  V  A  H  D  G  G  G  S  Q  L  I  *  H  M  I  V  S  L  Y  L  R  C  I  K  I  F  S  S  C  L  F  F  T  F  F  L  V  S  I  F  H  S  F  P  P  L  F  F  S  I  L  G  Q  I  E  W  V  S  G  V  Y  C  L  F  I  C  K  N  S  V  L  D  I  S  N  D  Q  F  S  *  Y  F  S  Y   : R  *  *  T  K  K  K  K  E  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20002" stop="20194"/>
                    <exon start="21241" stop="21534"/>
                    <exon start="22644" stop="22759"/>
                    <exon start="22947" stop="23448"/>
                    <exon start="23565" stop="23603"/>
                    <exon start="24115" stop="24399"/>
                    <exon start="24907" stop="25046"/>
                    <exon start="25712" stop="26189"/>
                    <exon start="26445" stop="26743"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2343</number_coding_nucleotides>
                  <number_encoded_amino_acids>781</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISPYSPPPPSLTEKNLRRKTILRLSSPEMRKMRSVLCLLVLCCSVAFVAAQRSNNVTSKWKTLSGDAPKVIARGGFSGLLPDSSFNAYMLAQAISSADWVAWCDVQLTKDGVGICFPDIKLNNASDIDTLYPNRNNNYSVNGIPQTGWFSIDFSIKDLAPVSLKQGVYSRSPRFDGTPQQILTVQDVATQVKPPGLWLNIQHDSFYSQHNLSMRSFVVSLSRSVIANYISSPEVNFLRSIASRLNPRVTKRVFRFLNEDDIEPSTSQTYGSLVKNLTFVKTFAAGILVPKHYIWPTDSSLYLQPHTSVVSDAHKEGLEIYAADFVNDVPFAYNYSYDPVAEYLSFIDNGEFSVDGVLSDFPMSPSASVDCFSHLGANDKPQVTLQIIAPQGASGDYPGCTDLAYTKAASDGADIIGCPVQMTKDGIPFCLSSINLIDTTTAAQSPFSDIATTAPELQITDGILTINLNWSDIQTLKPVISTRYSDFRLSRNPKARNVGKFMSLADFLTFSKTANVSGIMISIENAAYLAKQGLGVTDAVLDALSTAGYNNQTARKVMIQSNDSSVLEEFKKSSYELVYLVDDNISDIKNSTILEIKTFAKSVVITKKSVFPSEDAFIIGQTNIVQKLQSANLPVYVRLFNNEFISQAWDFFSDSSTEINNYVLGAGVDGLVTEYPGTAARYRRNRCLAYKNLPPYMSPVQPGSLLGLMTVQSMPPVEPPSPVLDVSDVTEPPLPPVAKINPSNDDGSTARAPTTPPNGQSSVVASILMSSVAVLLAIFMVY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26863" stop="27066"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HMIVSLYLRCIKIFSSCLFFTFFLVSIFHSFPPLFFSILGQIEWVSGVYCLFICKNSVLDISNDQFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="21101" e_stop="21103"/>
            <exon e_start="21241" e_stop="21534"/>
            <exon e_start="22644" e_stop="22759"/>
            <exon e_start="22947" e_stop="23448"/>
            <exon e_start="23565" e_stop="23603"/>
            <exon e_start="24115" e_stop="24399"/>
            <exon e_start="24907" e_stop="25046"/>
            <exon e_start="25712" e_stop="26189"/>
            <exon e_start="26445" e_stop="27135"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.879" acc_prob="1.000" e_score="0.667"/>
          <exon-intron don_prob="0.980" acc_prob="0.223" e_score="0.966"/>
          <exon-intron don_prob="0.995" acc_prob="0.737" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.991"/>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.667">
            <gDNA_exon_boundary e_start="21101" e_stop="21103" e_length="3"/>
          </exon>
          <intron i_serial="1" don_prob="0.879" acc_prob="1.000">
            <gDNA_intron_boundary i_start="21104" i_stop="21240" i_length="137"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="21241" e_stop="21534" e_length="294"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.223">
            <gDNA_intron_boundary i_start="21535" i_stop="22643" i_length="1109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22644" e_stop="22759" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.737">
            <gDNA_intron_boundary i_start="22760" i_stop="22946" i_length="187"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22947" e_stop="23448" e_length="502"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="23449" i_stop="23564" i_length="116"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23565" e_stop="23603" e_length="39"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.978">
            <gDNA_intron_boundary i_start="23604" i_stop="24114" i_length="511"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="24115" e_stop="24399" e_length="285"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="24400" i_stop="24906" i_length="507"/>
          </intron>
          <exon e_serial="7" e_score="0.991">
            <gDNA_exon_boundary e_start="24907" e_stop="25046" e_length="140"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="25047" i_stop="25711" i_length="665"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="25712" e_stop="26189" e_length="478"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.992">
            <gDNA_intron_boundary i_start="26190" i_stop="26444" i_length="255"/>
          </intron>
          <exon e_serial="9" e_score="0.997">
            <gDNA_exon_boundary e_start="26445" e_stop="27135" e_length="691"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21101" stop="21103"/>
              <exon start="21241" stop="21534"/>
              <exon start="22644" stop="22759"/>
              <exon start="22947" stop="23030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21501" stop="21534"/>
              <exon start="22644" stop="22759"/>
              <exon start="22947" stop="23389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22744" stop="22759"/>
              <exon start="22947" stop="23448"/>
              <exon start="23565" stop="23603"/>
              <exon start="24115" stop="24399"/>
              <exon start="24907" stop="24971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22744" stop="22759"/>
              <exon start="22947" stop="23448"/>
              <exon start="23565" stop="23603"/>
              <exon start="24115" stop="24399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23399" stop="23448"/>
              <exon start="23565" stop="23603"/>
              <exon start="24115" stop="24399"/>
              <exon start="24907" stop="25046"/>
              <exon start="25712" stop="25756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23399" stop="23448"/>
              <exon start="23565" stop="23603"/>
              <exon start="24115" stop="24298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23404" stop="23448"/>
              <exon start="23565" stop="23603"/>
              <exon start="24115" stop="24326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23405" stop="23448"/>
              <exon start="23565" stop="23603"/>
              <exon start="24115" stop="24399"/>
              <exon start="24907" stop="25017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23405" stop="23448"/>
              <exon start="23565" stop="23603"/>
              <exon start="24115" stop="24399"/>
              <exon start="24907" stop="25010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24115" stop="24399"/>
              <exon start="24907" stop="25046"/>
              <exon start="25712" stop="26029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24955" stop="25046"/>
              <exon start="25712" stop="26096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24957" stop="25046"/>
              <exon start="25712" stop="26189"/>
              <exon start="26445" stop="26616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24960" stop="25046"/>
              <exon start="25712" stop="26189"/>
              <exon start="26445" stop="26585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24982" stop="25046"/>
              <exon start="25712" stop="26189"/>
              <exon start="26445" stop="26760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25726" stop="26189"/>
              <exon start="26445" stop="26563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25836" stop="26189"/>
              <exon start="26445" stop="26824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25848" stop="26189"/>
              <exon start="26445" stop="26725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25960" stop="26189"/>
              <exon start="26445" stop="27023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26015" stop="26189"/>
              <exon start="26445" stop="27078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26015" stop="26189"/>
              <exon start="26445" stop="27074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26090" stop="26189"/>
              <exon start="26445" stop="26888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26165" stop="26189"/>
              <exon start="26445" stop="26869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26176" stop="26189"/>
              <exon start="26445" stop="26868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26445" stop="26925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26495" stop="26969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26513" stop="27135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACG : GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT : TGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAG : CATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCTAGAAGTGTTATTGCCAACTATATTTCATCACCTGAGGTGAATTTCCTGCGAAGTATCGCATCGCGATTGAATCCACGAGTGACAAAGCGCGTTTTCCGGTTTCTCAACGAAGATGATATTGAGCCATCAACAAGTCAAACATATGGTTCTCTAGTGAAGAATCTCACATTTGTTAAAACCTTTGCCGCTGGGATTCTTGTTCCCAAACACTATATCTGGCCAACGGACAGCAGCTTGTACTTGCAGCCACATACATCGGTTGTTTCGGACGCTCATAAGGAAGGACTTGAGATTTATGCAGCCGACTTTGTTAATGATGTACCATTTGCTTATAATTATAGCTATGATCCTGTAGCTGAGTATTTATCCTTTATAGACAACGGTGAGTTCTCGGTGGACGGAGTGTTATCTGACTTCCCAATGTCTCCATCTGCGTCAGTAG : ATTGCTTCTCGCATTTGGGTGCGAATGATAAGCCTCAAG : TAACTCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACACGACGACTGCGGCCCAATCGCCATTCAGCGACATCGCTACCACTGCTCCAGAGCTTCAGATAACAGATGGAATACTCACCATCAACCTAAACTGGAGCGATATTCAAACGCTGAAAC : CGGTAATATCAACCCGGTATTCAGACTTTAGATTGTCACGGAATCCAAAGGCCAGAAATGTTGGAAAGTTTATGTCGTTAGCAGACTTCTTGACATTTTCCAAAACTGCTAATGTTTCTGGTATAATGATCAGCATAGAG : AATGCTGCATACCTGGCAAAGCAGGGATTAGGTGTAACTGATGCGGTTTTGGATGCCCTAAGCACAGCTGGTTACAATAATCAGACAGCTAGGAAAGTTATGATCCAATCAAATGACAGTTCTGTTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTATATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAA : GGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTTTTCCATTTTGGGTCAGATTGAGTGGGTGTCTGGGGTTTATTGCCTATTTATTTGTAAGAATTCTGTTTTGGATATAAGCAATGATCAATTTAGTTAGTATTTTTCATACACAGCCTTTTTATATTCTATTCATGTAATATAAAATTGCAAATAAATGTTGCAGACC</gDNA_template>
            <first_frame> T  :  E  M  H  Q  K  S  *  L  V  E  D  F  L  G  Y  F  L  I  Q  A  L  M  P  T  C  W  H  K  Q  L  A  R  L  I  G  L  L  G  V  M  F  N  S  Q  K  T  G  L  A  F  V  F  L  I  S  S  L  T  M  L  L  T  S  I  L  S  T  Q  T  G  I  T  T  T  R  *  M  E  F  L  R  Q  D  G  F  L  *  I  S  A  S  R  I  W  H  L  S  A  :  *  N  K  E  C  I  R  G  R  L  D  L  M  A  L  P  S  K  F  L  L  S  R  M  *  L  P  K  S  N  L  Q  D  Y  G  *  I  S  S :   M  I  P  S  T  A  S  T  I  *  V  *  E  A  L  L  F  P  Y  L  E  V  L  L  P  T  I  F  H  H  L  R  *  I  S  C  E  V  S  H  R  D  *  I  H  E  *  Q  S  A  F  S  G  F  S  T  K  M  I  L  S  H  Q  Q  V  K  H  M  V  L  *  *  R  I  S  H  L  L  K  P  L  P  L  G  F  L  F  P  N  T  I  S  G  Q  R  T  A  A  C  T  C  S  H  I  H  R  L  F  R  T  L  I  R  K  D  L  R  F  M  Q  P  T  L  L  M  M  Y  H  L  L  I  I  I  A  M  I  L  *  L  S  I  Y  P  L  *  T  T  V  S  S  R  W  T  E  C  Y  L  T  S  Q  C  L  H  L  R  Q  *  :  I  A  S  R  I  W  V  R  M  I  S  L  K  :  *  L  F  R  L  S  H  L  K  E  Q  V  V  T  I  L  V  V  Q  I  *  H  I  Q  K  L  L  P  M  V  Q  I  L  L  A  V  L  S  K  *  Q  K  M  E  Y  P  S  A  L  V  R  *  I  *  *  T  R  R  L  R  P  N  R  H  S  A  T  S  L  P  L  L  Q  S  F  R  *  Q  M  E  Y  S  P  S  T  *  T  G  A  I  F  K  R  *  N  :  R  *  Y  Q  P  G  I  Q  T  L  D  C  H  G  I  Q  R  P  E  M  L  E  S  L  C  R  *  Q  T  S  *  H  F  P  K  L  L  M  F  L  V  *  *  S  A  *  R :   M  L  H  T  W  Q  S  R  D  *  V  *  L  M  R  F  W  M  P  *  A  Q  L  V  T  I  I  R  Q  L  G  K  L  *  S  N  Q  M  T  V  L  F  W  K  N  S  R  R  V  V  M  N  L  F  I  W  L  T  I  I  S  V  I  L  R  T  Q  L  Y  W  R  S  R  P  L  Q  N  L  L  S  *  P  R  N  Q  S  S  P  V  K  T  L  L  S  L  V  K  R  I  L  C  R  S  C  S  Q  Q  I  S  R  Y  M  Y  D  Y  L  I  T  S  L  Y  L  K  H  G  T  S  S  Q  I  R  L  L  R  *  T  T  M  F  L  E  L  V  L  M  V  L  L  Q  N  T  L  G  Q  R  L  D  T  E  :  G  T  V  V  *  H  T  K  T  C  H  H  I  *  A  L  F  N  L  G  V  S  W  D  S  *  L  F  S  L  C  H  Q  S  N  L  P  A  P  C  S  M  *  V  M  *  L  S  H  H  F  H  L  L  Q  R  *  T  Q  V  T  T  M  V  L  Q  L  E  L  P  L  L  L  Q  M  A  N  P  Q  L  L  L  A  F  S  *  A  Q  L  Q  F  F  *  Q  F  S  W  Y  I  D  D  H  F  Y  F  G  A  T  I  L  Y  N  L  F  C  H  L  T  D  Q  T  S  L  W  *  L  W  S  R  T  *  W  R  R  *  S  A  H  L  T  H  D  C  F  L  V  F  A  M  Y  Q  N  F  Q  L  L  F  I  L  Y  I  L  P  R  F  Y  F  S  F  L  P  S  P  F  F  F  H  F  G  S  D  *  V  G  V  W  G  L  L  P  I  Y  L  *  E  F  C  F  G  Y  K  Q  *  S  I  *  L  V  F  F  I  H  S  L  F  I  F  Y  S  C  N  I  K  L  Q  I  N  V  A  D  </first_frame>
            <second_frame>  R :   R  C  T  K  S  H  S  S  W  R  I  F  W  V  T  S  *  F  K  L  *  C  L  H  V  G  T  S  N  *  L  G  *  L  G  C  L  V  *  C  S  T  H  K  R  R  G  W  H  L  F  S  *  Y  Q  A  *  Q  C  F  *  H  R  Y  S  L  P  K  Q  E  *  Q  L  L  G  E  W  N  S  S  D  R  M  V  F  Y  R  F  Q  H  Q  G  F  G  T  C  Q  L :   E  T  R  S  V  F  A  V  A  *  I  *  W  H  S  P  A  N  S  Y  C  P  G  C  S  Y  P  S  Q  T  S  R  I  M  V  E  Y  P   : A  *  F  L  L  Q  P  A  Q  S  E  Y  E  K  L  C  C  F  P  I  *  K  C  Y  C  Q  L  Y  F  I  T  *  G  E  F  P  A  K  Y  R  I  A  I  E  S  T  S  D  K  A  R  F  P  V  S  Q  R  R  *  Y  *  A  I  N  K  S  N  I  W  F  S  S  E  E  S  H  I  C  *  N  L  C  R  W  D  S  C  S  Q  T  L  Y  L  A  N  G  Q  Q  L  V  L  A  A  T  Y  I  G  C  F  G  R  S  *  G  R  T  *  D  L  C  S  R  L  C  *  *  C  T  I  C  L  *  L  *  L  *  S  C  S  *  V  F  I  L  Y  R  Q  R  *  V  L  G  G  R  S  V  I  *  L  P  N  V  S  I  C  V  S  R :   L  L  L  A  F  G  C  E  *  *  A  S  S :   N  S  S  D  Y  R  T  S  R  S  K  W  *  L  S  W  L  Y  R  F  S  I  Y  K  S  C  F  R  W  C  R  Y  Y  W  L  S  C  P  N  D  K  R  W  N  T  L  L  P  *  F  D  K  S  D  R  H  D  D  C  G  P  I  A  I  Q  R  H  R  Y  H  C  S  R  A  S  D  N  R  W  N  T  H  H  Q  P  K  L  E  R  Y  S  N  A  E  T :   G  N  I  N  P  V  F  R  L  *  I  V  T  E  S  K  G  Q  K  C  W  K  V  Y  V  V  S  R  L  L  D  I  F  Q  N  C  *  C  F  W  Y  N  D  Q  H  R   : E  C  C  I  P  G  K  A  G  I  R  C  N  *  C  G  F  G  C  P  K  H  S  W  L  Q  *  S  D  S  *  E  S  Y  D  P  I  K  *  Q  F  C  S  G  R  I  Q  E  E  *  L  *  T  C  L  F  G  *  R  *  Y  Q  *  Y  *  E  L  N  Y  I  G  D  Q  D  L  C  K  I  C  C  H  N  Q  E  I  S  L  P  Q  *  R  R  F  Y  H  W  S  N  E  Y  C  A  E  A  A  V  S  K  S  P  G  I  C  T  T  I  *  *  R  V  Y  I  S  S  M  G  L  L  L  R  F  V  Y  *  D  K  Q  L  C  S  W  S  W  C  *  W  S  C  Y  R  I  P  W  D  S  G  *  I  P  K :   E  P  L  F  S  I  Q  K  L  A  T  I  Y  E  P  C  S  T  W  E  S  P  G  T  H  D  C  S  V  Y  A  T  S  R  T  S  Q  P  R  A  R  C  K  *  C  D  *  A  T  T  S  T  C  C  K  D  K  P  K  *  R  R  W  F  Y  S  *  S  S  H  Y  S  S  K  W  P  I  L  S  C  C  *  H  S  H  E  L  S  C  S  S  S  S  N  F  H  G  I  L  M  T  I  S  T  L  V  P  P  F  C  T  I  C  F  A  I  L  L  I  K  P  P  S  G  D  Y  G  V  A  H  D  G  G  G  S  Q  L  I  *  H  M  I  V  S  L  Y  L  R  C  I  K  I  F  S  S  C  L  F  F  T  F  F  L  V  S  I  F  H  S  F  P  P  L  F  F  S  I  L  G  Q  I  E  W  V  S  G  V  Y  C  L  F  I  C  K  N  S  V  L  D  I  S  N  D  Q  F  S  *  Y  F  S  Y  T  A  F  L  Y  S  I  H  V  I  *  N  C  K  *  M  L  Q  T </second_frame>
            <third_frame>    : G  D  A  P  K  V  I  A  R  G  G  F  S  G  L  L  P  D  S  S  F  N  A  Y  M  L  A  Q  A  I  S  S  A  D  W  V  A  W  C  D  V  Q  L  T  K  D  G  V  G  I  C  F  P  D  I  K  L  N  N  A  S  D  I  D  T  L  Y  P  N  R  N  N  N  Y  S  V  N  G  I  P  Q  T  G  W  F  S  I  D  F  S  I  K  D  L  A  P  V  S   : L  K  Q  G  V  Y  S  R  S  P  R  F  D  G  T  P  Q  Q  I  L  T  V  Q  D  V  A  T  Q  V  K  P  P  G  L  W  L  N  I  Q  :  H  D  S  F  Y  S  Q  H  N  L  S  M  R  S  F  V  V  S  L  S  R  S  V  I  A  N  Y  I  S  S  P  E  V  N  F  L  R  S  I  A  S  R  L  N  P  R  V  T  K  R  V  F  R  F  L  N  E  D  D  I  E  P  S  T  S  Q  T  Y  G  S  L  V  K  N  L  T  F  V  K  T  F  A  A  G  I  L  V  P  K  H  Y  I  W  P  T  D  S  S  L  Y  L  Q  P  H  T  S  V  V  S  D  A  H  K  E  G  L  E  I  Y  A  A  D  F  V  N  D  V  P  F  A  Y  N  Y  S  Y  D  P  V  A  E  Y  L  S  F  I  D  N  G  E  F  S  V  D  G  V  L  S  D  F  P  M  S  P  S  A  S  V   : D  C  F  S  H  L  G  A  N  D  K  P  Q   : V  T  L  Q  I  I  A  P  Q  G  A  S  G  D  Y  P  G  C  T  D  L  A  Y  T  K  A  A  S  D  G  A  D  I  I  G  C  P  V  Q  M  T  K  D  G  I  P  F  C  L  S  S  I  N  L  I  D  T  T  T  A  A  Q  S  P  F  S  D  I  A  T  T  A  P  E  L  Q  I  T  D  G  I  L  T  I  N  L  N  W  S  D  I  Q  T  L  K   : P  V  I  S  T  R  Y  S  D  F  R  L  S  R  N  P  K  A  R  N  V  G  K  F  M  S  L  A  D  F  L  T  F  S  K  T  A  N  V  S  G  I  M  I  S  I  E  :  N  A  A  Y  L  A  K  Q  G  L  G  V  T  D  A  V  L  D  A  L  S  T  A  G  Y  N  N  Q  T  A  R  K  V  M  I  Q  S  N  D  S  S  V  L  E  E  F  K  K  S  S  Y  E  L  V  Y  L  V  D  D  N  I  S  D  I  K  N  S  T  I  L  E  I  K  T  F  A  K  S  V  V  I  T  K  K  S  V  F  P  S  E  D  A  F  I  I  G  Q  T  N  I  V  Q  K  L  Q  S  A  N  L  P  V  Y  V  R  L  F  N  N  E  F  I  S  Q  A  W  D  F  F  S  D  S  S  T  E  I  N  N  Y  V  L  G  A  G  V  D  G  L  V  T  E  Y  P  G  T  A  A  R  Y  R   : R  N  R  C  L  A  Y  K  N  L  P  P  Y  M  S  P  V  Q  P  G  S  L  L  G  L  M  T  V  Q  S  M  P  P  V  E  P  P  S  P  V  L  D  V  S  D  V  T  E  P  P  L  P  P  V  A  K  I  N  P  S  N  D  D  G  S  T  A  R  A  P  T  T  P  P  N  G  Q  S  S  V  V  A  S  I  L  M  S  S  V  A  V  L  L  A  I  F  M  V  Y  *  *  P  F  L  L  W  C  H  H  F  V  Q  F  V  L  P  S  Y  *  S  N  L  P  L  V  I  M  E  S  H  M  M  A  A  V  V  S  S  F  N  T  *  L  F  P  C  I  C  D  V  S  K  F  S  A  L  V  Y  S  L  H  S  S  S  F  L  F  F  I  P  S  L  P  F  F  F  P  F  W  V  R  L  S  G  C  L  G  F  I  A  Y  L  F  V  R  I  L  F  W  I  *  A  M  I  N  L  V  S  I  F  H  T  Q  P  F  Y  I  L  F  M  *  Y  K  I  A  N  K  C  C  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21103" stop="21534"/>
                    <exon start="22644" stop="22759"/>
                    <exon start="22947" stop="23448"/>
                    <exon start="23565" stop="23603"/>
                    <exon start="24115" stop="24399"/>
                    <exon start="24907" stop="25046"/>
                    <exon start="25712" stop="26189"/>
                    <exon start="26445" stop="26743"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2151</number_coding_nucleotides>
                  <number_encoded_amino_acids>717</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GDAPKVIARGGFSGLLPDSSFNAYMLAQAISSADWVAWCDVQLTKDGVGICFPDIKLNNASDIDTLYPNRNNNYSVNGIPQTGWFSIDFSIKDLAPVSLKQGVYSRSPRFDGTPQQILTVQDVATQVKPPGLWLNIQHDSFYSQHNLSMRSFVVSLSRSVIANYISSPEVNFLRSIASRLNPRVTKRVFRFLNEDDIEPSTSQTYGSLVKNLTFVKTFAAGILVPKHYIWPTDSSLYLQPHTSVVSDAHKEGLEIYAADFVNDVPFAYNYSYDPVAEYLSFIDNGEFSVDGVLSDFPMSPSASVDCFSHLGANDKPQVTLQIIAPQGASGDYPGCTDLAYTKAASDGADIIGCPVQMTKDGIPFCLSSINLIDTTTAAQSPFSDIATTAPELQITDGILTINLNWSDIQTLKPVISTRYSDFRLSRNPKARNVGKFMSLADFLTFSKTANVSGIMISIENAAYLAKQGLGVTDAVLDALSTAGYNNQTARKVMIQSNDSSVLEEFKKSSYELVYLVDDNISDIKNSTILEIKTFAKSVVITKKSVFPSEDAFIIGQTNIVQKLQSANLPVYVRLFNNEFISQAWDFFSDSSTEINNYVLGAGVDGLVTEYPGTAARYRRNRCLAYKNLPPYMSPVQPGSLLGLMTVQSMPPVEPPSPVLDVSDVTEPPLPPVAKINPSNDDGSTARAPTTPPNGQSSVVASILMSSVAVLLAIFMVY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26863" stop="27066"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HMIVSLYLRCIKIFSSCLFFTFFLVSIFHSFPPLFFSILGQIEWVSGVYCLFICKNSVLDISNDQFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="24018" e_stop="24026"/>
            <exon e_start="24115" e_stop="24399"/>
            <exon e_start="24907" e_stop="25046"/>
            <exon e_start="25712" e_stop="26189"/>
            <exon e_start="26445" e_stop="27135"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.978" e_score="0.667"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.667">
            <gDNA_exon_boundary e_start="24018" e_stop="24026" e_length="9"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.978">
            <gDNA_intron_boundary i_start="24027" i_stop="24114" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24115" e_stop="24399" e_length="285"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="24400" i_stop="24906" i_length="507"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24907" e_stop="25046" e_length="140"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="25047" i_stop="25711" i_length="665"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25712" e_stop="26189" e_length="478"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.992">
            <gDNA_intron_boundary i_start="26190" i_stop="26444" i_length="255"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="26445" e_stop="27135" e_length="691"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24018" stop="24026"/>
              <exon start="24115" stop="24399"/>
              <exon start="24907" stop="25046"/>
              <exon start="25712" stop="26133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24115" stop="24399"/>
              <exon start="24907" stop="25046"/>
              <exon start="25712" stop="26029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24955" stop="25046"/>
              <exon start="25712" stop="26096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24957" stop="25046"/>
              <exon start="25712" stop="26189"/>
              <exon start="26445" stop="26616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24960" stop="25046"/>
              <exon start="25712" stop="26189"/>
              <exon start="26445" stop="26585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24982" stop="25046"/>
              <exon start="25712" stop="26189"/>
              <exon start="26445" stop="26760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25726" stop="26189"/>
              <exon start="26445" stop="26563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25836" stop="26189"/>
              <exon start="26445" stop="26824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25848" stop="26189"/>
              <exon start="26445" stop="26725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25960" stop="26189"/>
              <exon start="26445" stop="27023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26015" stop="26189"/>
              <exon start="26445" stop="27078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26015" stop="26189"/>
              <exon start="26445" stop="27074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26090" stop="26189"/>
              <exon start="26445" stop="26888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26165" stop="26189"/>
              <exon start="26445" stop="26869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26176" stop="26189"/>
              <exon start="26445" stop="26868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26445" stop="26925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26495" stop="26969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26513" stop="27135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACTCTAAG : TAACTCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACACGACGACTGCGGCCCAATCGCCATTCAGCGACATCGCTACCACTGCTCCAGAGCTTCAGATAACAGATGGAATACTCACCATCAACCTAAACTGGAGCGATATTCAAACGCTGAAAC : CGGTAATATCAACCCGGTATTCAGACTTTAGATTGTCACGGAATCCAAAGGCCAGAAATGTTGGAAAGTTTATGTCGTTAGCAGACTTCTTGACATTTTCCAAAACTGCTAATGTTTCTGGTATAATGATCAGCATAGAG : AATGCTGCATACCTGGCAAAGCAGGGATTAGGTGTAACTGATGCGGTTTTGGATGCCCTAAGCACAGCTGGTTACAATAATCAGACAGCTAGGAAAGTTATGATCCAATCAAATGACAGTTCTGTTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTATATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAA : GGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTTTTCCATTTTGGGTCAGATTGAGTGGGTGTCTGGGGTTTATTGCCTATTTATTTGTAAGAATTCTGTTTTGGATATAAGCAATGATCAATTTAGTTAGTATTTTTCATACACAGCCTTTTTATATTCTATTCATGTAATATAAAATTGCAAATAAATGTTGCAGACC</gDNA_template>
            <first_frame> H  S  K  :  *  L  F  R  L  S  H  L  K  E  Q  V  V  T  I  L  V  V  Q  I  *  H  I  Q  K  L  L  P  M  V  Q  I  L  L  A  V  L  S  K  *  Q  K  M  E  Y  P  S  A  L  V  R  *  I  *  *  T  R  R  L  R  P  N  R  H  S  A  T  S  L  P  L  L  Q  S  F  R  *  Q  M  E  Y  S  P  S  T  *  T  G  A  I  F  K  R  *  N  :  R  *  Y  Q  P  G  I  Q  T  L  D  C  H  G  I  Q  R  P  E  M  L  E  S  L  C  R  *  Q  T  S  *  H  F  P  K  L  L  M  F  L  V  *  *  S  A  *  R :   M  L  H  T  W  Q  S  R  D  *  V  *  L  M  R  F  W  M  P  *  A  Q  L  V  T  I  I  R  Q  L  G  K  L  *  S  N  Q  M  T  V  L  F  W  K  N  S  R  R  V  V  M  N  L  F  I  W  L  T  I  I  S  V  I  L  R  T  Q  L  Y  W  R  S  R  P  L  Q  N  L  L  S  *  P  R  N  Q  S  S  P  V  K  T  L  L  S  L  V  K  R  I  L  C  R  S  C  S  Q  Q  I  S  R  Y  M  Y  D  Y  L  I  T  S  L  Y  L  K  H  G  T  S  S  Q  I  R  L  L  R  *  T  T  M  F  L  E  L  V  L  M  V  L  L  Q  N  T  L  G  Q  R  L  D  T  E  :  G  T  V  V  *  H  T  K  T  C  H  H  I  *  A  L  F  N  L  G  V  S  W  D  S  *  L  F  S  L  C  H  Q  S  N  L  P  A  P  C  S  M  *  V  M  *  L  S  H  H  F  H  L  L  Q  R  *  T  Q  V  T  T  M  V  L  Q  L  E  L  P  L  L  L  Q  M  A  N  P  Q  L  L  L  A  F  S  *  A  Q  L  Q  F  F  *  Q  F  S  W  Y  I  D  D  H  F  Y  F  G  A  T  I  L  Y  N  L  F  C  H  L  T  D  Q  T  S  L  W  *  L  W  S  R  T  *  W  R  R  *  S  A  H  L  T  H  D  C  F  L  V  F  A  M  Y  Q  N  F  Q  L  L  F  I  L  Y  I  L  P  R  F  Y  F  S  F  L  P  S  P  F  F  F  H  F  G  S  D  *  V  G  V  W  G  L  L  P  I  Y  L  *  E  F  C  F  G  Y  K  Q  *  S  I  *  L  V  F  F  I  H  S  L  F  I  F  Y  S  C  N  I  K  L  Q  I  N  V  A  D  </first_frame>
            <second_frame>  T  L  S :   N  S  S  D  Y  R  T  S  R  S  K  W  *  L  S  W  L  Y  R  F  S  I  Y  K  S  C  F  R  W  C  R  Y  Y  W  L  S  C  P  N  D  K  R  W  N  T  L  L  P  *  F  D  K  S  D  R  H  D  D  C  G  P  I  A  I  Q  R  H  R  Y  H  C  S  R  A  S  D  N  R  W  N  T  H  H  Q  P  K  L  E  R  Y  S  N  A  E  T :   G  N  I  N  P  V  F  R  L  *  I  V  T  E  S  K  G  Q  K  C  W  K  V  Y  V  V  S  R  L  L  D  I  F  Q  N  C  *  C  F  W  Y  N  D  Q  H  R   : E  C  C  I  P  G  K  A  G  I  R  C  N  *  C  G  F  G  C  P  K  H  S  W  L  Q  *  S  D  S  *  E  S  Y  D  P  I  K  *  Q  F  C  S  G  R  I  Q  E  E  *  L  *  T  C  L  F  G  *  R  *  Y  Q  *  Y  *  E  L  N  Y  I  G  D  Q  D  L  C  K  I  C  C  H  N  Q  E  I  S  L  P  Q  *  R  R  F  Y  H  W  S  N  E  Y  C  A  E  A  A  V  S  K  S  P  G  I  C  T  T  I  *  *  R  V  Y  I  S  S  M  G  L  L  L  R  F  V  Y  *  D  K  Q  L  C  S  W  S  W  C  *  W  S  C  Y  R  I  P  W  D  S  G  *  I  P  K :   E  P  L  F  S  I  Q  K  L  A  T  I  Y  E  P  C  S  T  W  E  S  P  G  T  H  D  C  S  V  Y  A  T  S  R  T  S  Q  P  R  A  R  C  K  *  C  D  *  A  T  T  S  T  C  C  K  D  K  P  K  *  R  R  W  F  Y  S  *  S  S  H  Y  S  S  K  W  P  I  L  S  C  C  *  H  S  H  E  L  S  C  S  S  S  S  N  F  H  G  I  L  M  T  I  S  T  L  V  P  P  F  C  T  I  C  F  A  I  L  L  I  K  P  P  S  G  D  Y  G  V  A  H  D  G  G  G  S  Q  L  I  *  H  M  I  V  S  L  Y  L  R  C  I  K  I  F  S  S  C  L  F  F  T  F  F  L  V  S  I  F  H  S  F  P  P  L  F  F  S  I  L  G  Q  I  E  W  V  S  G  V  Y  C  L  F  I  C  K  N  S  V  L  D  I  S  N  D  Q  F  S  *  Y  F  S  Y  T  A  F  L  Y  S  I  H  V  I  *  N  C  K  *  M  L  Q  T </second_frame>
            <third_frame>   L  *   : V  T  L  Q  I  I  A  P  Q  G  A  S  G  D  Y  P  G  C  T  D  L  A  Y  T  K  A  A  S  D  G  A  D  I  I  G  C  P  V  Q  M  T  K  D  G  I  P  F  C  L  S  S  I  N  L  I  D  T  T  T  A  A  Q  S  P  F  S  D  I  A  T  T  A  P  E  L  Q  I  T  D  G  I  L  T  I  N  L  N  W  S  D  I  Q  T  L  K   : P  V  I  S  T  R  Y  S  D  F  R  L  S  R  N  P  K  A  R  N  V  G  K  F  M  S  L  A  D  F  L  T  F  S  K  T  A  N  V  S  G  I  M  I  S  I  E  :  N  A  A  Y  L  A  K  Q  G  L  G  V  T  D  A  V  L  D  A  L  S  T  A  G  Y  N  N  Q  T  A  R  K  V  M  I  Q  S  N  D  S  S  V  L  E  E  F  K  K  S  S  Y  E  L  V  Y  L  V  D  D  N  I  S  D  I  K  N  S  T  I  L  E  I  K  T  F  A  K  S  V  V  I  T  K  K  S  V  F  P  S  E  D  A  F  I  I  G  Q  T  N  I  V  Q  K  L  Q  S  A  N  L  P  V  Y  V  R  L  F  N  N  E  F  I  S  Q  A  W  D  F  F  S  D  S  S  T  E  I  N  N  Y  V  L  G  A  G  V  D  G  L  V  T  E  Y  P  G  T  A  A  R  Y  R   : R  N  R  C  L  A  Y  K  N  L  P  P  Y  M  S  P  V  Q  P  G  S  L  L  G  L  M  T  V  Q  S  M  P  P  V  E  P  P  S  P  V  L  D  V  S  D  V  T  E  P  P  L  P  P  V  A  K  I  N  P  S  N  D  D  G  S  T  A  R  A  P  T  T  P  P  N  G  Q  S  S  V  V  A  S  I  L  M  S  S  V  A  V  L  L  A  I  F  M  V  Y  *  *  P  F  L  L  W  C  H  H  F  V  Q  F  V  L  P  S  Y  *  S  N  L  P  L  V  I  M  E  S  H  M  M  A  A  V  V  S  S  F  N  T  *  L  F  P  C  I  C  D  V  S  K  F  S  A  L  V  Y  S  L  H  S  S  S  F  L  F  F  I  P  S  L  P  F  F  F  P  F  W  V  R  L  S  G  C  L  G  F  I  A  Y  L  F  V  R  I  L  F  W  I  *  A  M  I  N  L  V  S  I  F  H  T  Q  P  F  Y  I  L  F  M  *  Y  K  I  A  N  K  C  C  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24026" stop="24399"/>
                    <exon start="24907" stop="25046"/>
                    <exon start="25712" stop="26189"/>
                    <exon start="26445" stop="26743"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1200</number_coding_nucleotides>
                  <number_encoded_amino_acids>400</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTLQIIAPQGASGDYPGCTDLAYTKAASDGADIIGCPVQMTKDGIPFCLSSINLIDTTTAAQSPFSDIATTAPELQITDGILTINLNWSDIQTLKPVISTRYSDFRLSRNPKARNVGKFMSLADFLTFSKTANVSGIMISIENAAYLAKQGLGVTDAVLDALSTAGYNNQTARKVMIQSNDSSVLEEFKKSSYELVYLVDDNISDIKNSTILEIKTFAKSVVITKKSVFPSEDAFIIGQTNIVQKLQSANLPVYVRLFNNEFISQAWDFFSDSSTEINNYVLGAGVDGLVTEYPGTAARYRRNRCLAYKNLPPYMSPVQPGSLLGLMTVQSMPPVEPPSPVLDVSDVTEPPLPPVAKINPSNDDGSTARAPTTPPNGQSSVVASILMSSVAVLLAIFMVY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26863" stop="27066"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HMIVSLYLRCIKIFSSCLFFTFFLVSIFHSFPPLFFSILGQIEWVSGVYCLFICKNSVLDISNDQFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="19858" e_stop="20194"/>
            <exon e_start="21241" e_stop="21988"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.985"/>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="19858" e_stop="20194" e_length="337"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20195" i_stop="21240" i_length="1046"/>
          </intron>
          <exon e_serial="2" e_score="0.947">
            <gDNA_exon_boundary e_start="21241" e_stop="21988" e_length="748"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19858" stop="20194"/>
              <exon start="21241" stop="21439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19894" stop="20194"/>
              <exon start="21241" stop="21478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19898" stop="20194"/>
              <exon start="21241" stop="21303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19905" stop="20194"/>
              <exon start="21241" stop="21477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19905" stop="20194"/>
              <exon start="21241" stop="21449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19907" stop="20194"/>
              <exon start="21241" stop="21418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19907" stop="20194"/>
              <exon start="21241" stop="21373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19908" stop="20194"/>
              <exon start="21241" stop="21534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19909" stop="20194"/>
              <exon start="21241" stop="21534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19909" stop="20194"/>
              <exon start="21241" stop="21534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19911" stop="20194"/>
              <exon start="21241" stop="21501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19916" stop="20194"/>
              <exon start="21241" stop="21278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19919" stop="20194"/>
              <exon start="21241" stop="21500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19922" stop="20194"/>
              <exon start="21241" stop="21511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19941" stop="20194"/>
              <exon start="21241" stop="21445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20082" stop="20194"/>
              <exon start="21241" stop="21534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21288" stop="21988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443380" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAATATTTGCCAGCCTGAAAATAGCCCACACCCCTCAAAGGCAAGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG : GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCTGTAAGATTAAATCGTGACCTTTTGTATCTTTTACTATATGCTTTTTATGGTCCTATATATGTGAATGGCTGTTTAGATCAGCAGTTACACCTAGTAAAGAACTTGTTTTGGGCAATGAGTTTACACTCCAAAGCGGCCTGTTTTACCTATCATATGTAATTGAGAGGCTTCTCCACTAGTTTTGTTTTACTTAATAAACCAATTGATTTCATGGATTTATTCATTTGGAATTATAAATGGTGCTTAGCTTCACTGTCTTTGTTTTGCCATTCATTTGCTGATCTGTGAAGGTGGTACAGTCACTGCTCTCTTTTCTTTTAATGCGGGACAGCCCAGGTTCTGGTGCCATACCATTATAGTGTGTCTAAAGCCATTATGTATCTGTATTTATTTGGTTCTAAAACAATTCTGATATGTTGGGACTGCGTTTATCATTTCTTTTACATACTTATGC</gDNA_template>
            <first_frame> K  N  I  C  Q  P  E  N  S  P  H  P  S  K  A  R  H  K  H  S  H  T  F  S  L  Y  L  S  A  L  K  V  S  S  T  C  Q  S  S  H  F  F  F  T  Q  I  S  *  I  S  P  Y  S  P  P  P  P  S  L  T  E  K  N  L  R  R  K  T  I  L  R  L  S  S  P  E  M  R  K  M  R  S  V  L  C  L  L  V  L  C  C  S  V  A  F  V  A  A  Q  R  S  N  N  V  T  S  K  W  K  T  L  S   : G  D  A  P  K  V  I  A  R  G  G  F  S  G  L  L  P  D  S  S  F  N  A  Y  M  L  A  Q  A  I  S  S  A  D  W  V  A  W  C  D  V  Q  L  T  K  D  G  V  G  I  C  F  P  D  I  K  L  N  N  A  S  D  I  D  T  L  Y  P  N  R  N  N  N  Y  S  V  N  G  I  P  Q  T  G  W  F  S  I  D  F  S  I  K  D  L  A  P  V  S  C  K  I  K  S  *  P  F  V  S  F  T  I  C  F  L  W  S  Y  I  C  E  W  L  F  R  S  A  V  T  P  S  K  E  L  V  L  G  N  E  F  T  L  Q  S  G  L  F  Y  L  S  Y  V  I  E  R  L  L  H  *  F  C  F  T  *  *  T  N  *  F  H  G  F  I  H  L  E  L  *  M  V  L  S  F  T  V  F  V  L  P  F  I  C  *  S  V  K  V  V  Q  S  L  L  S  F  L  L  M  R  D  S  P  G  S  G  A  I  P  L  *  C  V  *  S  H  Y  V  S  V  F  I  W  F  *  N  N  S  D  M  L  G  L  R  L  S  F  L  L  H  T  Y   </first_frame>
            <second_frame>  K  I  F  A  S  L  K  I  A  H  T  P  Q  R  Q  G  T  N  T  H  T  L  S  L  S  I  Y  L  L  S  K  S  P  Q  L  V  N  H  H  T  F  S  S  H  K  S  A  E  S  L  H  I  L  L  H  L  R  H  *  R  K  K  I  Y  A  G  K  R  F  S  G  *  A  R  R  K  *  G  K  C  V  L  F  Y  V  S  W  Y  F  V  A  Q  L  H  L  L  L  L  K  D  L  T  M  *  P  L  N  G  K  H  *  A  :  E  M  H  Q  K  S  *  L  V  E  D  F  L  G  Y  F  L  I  Q  A  L  M  P  T  C  W  H  K  Q  L  A  R  L  I  G  L  L  G  V  M  F  N  S  Q  K  T  G  L  A  F  V  F  L  I  S  S  L  T  M  L  L  T  S  I  L  S  T  Q  T  G  I  T  T  T  R  *  M  E  F  L  R  Q  D  G  F  L  *  I  S  A  S  R  I  W  H  L  S  A  V  R  L  N  R  D  L  L  Y  L  L  L  Y  A  F  Y  G  P  I  Y  V  N  G  C  L  D  Q  Q  L  H  L  V  K  N  L  F  W  A  M  S  L  H  S  K  A  A  C  F  T  Y  H  M  *  L  R  G  F  S  T  S  F  V  L  L  N  K  P  I  D  F  M  D  L  F  I  W  N  Y  K  W  C  L  A  S  L  S  L  F  C  H  S  F  A  D  L  *  R  W  Y  S  H  C  S  L  F  F  *  C  G  T  A  Q  V  L  V  P  Y  H  Y  S  V  S  K  A  I  M  Y  L  Y  L  F  G  S  K  T  I  L  I  C  W  D  C  V  Y  H  F  F  Y  I  L  M  </second_frame>
            <third_frame>   K  Y  L  P  A  *  K  *  P  T  P  L  K  G  K  A  Q  T  L  T  H  F  L  S  L  S  I  C  S  Q  S  L  L  N  L  S  I  I  T  L  F  L  H  T  N  Q  L  N  L  S  I  F  S  S  T  S  V  T  N  G  K  K  F  T  P  E  N  D  S  P  A  E  L  A  G  N  E  E  N  A  F  C  F  M  S  P  G  T  L  L  L  S  C  I  C  C  C  S  K  I  *  Q  C  N  L  *  M  E  N  T  E  R :   R  C  T  K  S  H  S  S  W  R  I  F  W  V  T  S  *  F  K  L  *  C  L  H  V  G  T  S  N  *  L  G  *  L  G  C  L  V  *  C  S  T  H  K  R  R  G  W  H  L  F  S  *  Y  Q  A  *  Q  C  F  *  H  R  Y  S  L  P  K  Q  E  *  Q  L  L  G  E  W  N  S  S  D  R  M  V  F  Y  R  F  Q  H  Q  G  F  G  T  C  Q  L  *  D  *  I  V  T  F  C  I  F  Y  Y  M  L  F  M  V  L  Y  M  *  M  A  V  *  I  S  S  Y  T  *  *  R  T  C  F  G  Q  *  V  Y  T  P  K  R  P  V  L  P  I  I  C  N  *  E  A  S  P  L  V  L  F  Y  L  I  N  Q  L  I  S  W  I  Y  S  F  G  I  I  N  G  A  *  L  H  C  L  C  F  A  I  H  L  L  I  C  E  G  G  T  V  T  A  L  F  S  F  N  A  G  Q  P  R  F  W  C  H  T  I  I  V  C  L  K  P  L  C  I  C  I  Y  L  V  L  K  Q  F  *  Y  V  G  T  A  F  I  I  S  F  T  Y  L  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20002" stop="20194"/>
                    <exon start="21241" stop="21551"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISPYSPPPPSLTEKNLRRKTILRLSSPEMRKMRSVLCLLVLCCSVAFVAAQRSNNVTSKWKTLSGDAPKVIARGGFSGLLPDSSFNAYMLAQAISSADWVAWCDVQLTKDGVGICFPDIKLNNASDIDTLYPNRNNNYSVNGIPQTGWFSIDFSIKDLAPVSCKIKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="25702" e_stop="26189"/>
            <exon e_start="26445" e_stop="27135"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="0.966"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="25702" e_stop="26189" e_length="488"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.992">
            <gDNA_intron_boundary i_start="26190" i_stop="26444" i_length="255"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="26445" e_stop="27135" e_length="691"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25702" stop="26189"/>
              <exon start="26445" stop="26650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25726" stop="26189"/>
              <exon start="26445" stop="26563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25836" stop="26189"/>
              <exon start="26445" stop="26824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25848" stop="26189"/>
              <exon start="26445" stop="26725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25960" stop="26189"/>
              <exon start="26445" stop="27023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26015" stop="26189"/>
              <exon start="26445" stop="27078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26015" stop="26189"/>
              <exon start="26445" stop="27074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26090" stop="26189"/>
              <exon start="26445" stop="26888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26165" stop="26189"/>
              <exon start="26445" stop="26869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26176" stop="26189"/>
              <exon start="26445" stop="26868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26445" stop="26925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26495" stop="26969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26513" stop="27135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="7" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCATGCAGAATGCTGCATACCTGGCAAAGCAGGGATTAGGTGTAACTGATGCGGTTTTGGATGCCCTAAGCACAGCTGGTTACAATAATCAGACAGCTAGGAAAGTTATGATCCAATCAAATGACAGTTCTGTTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTATATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAA : GGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTTTTCCATTTTGGGTCAGATTGAGTGGGTGTCTGGGGTTTATTGCCTATTTATTTGTAAGAATTCTGTTTTGGATATAAGCAATGATCAATTTAGTTAGTATTTTTCATACACAGCCTTTTTATATTCTATTCATGTAATATAAAATTGCAAATAAATGTTGCAGACC</gDNA_template>
            <first_frame> L  H  A  E  C  C  I  P  G  K  A  G  I  R  C  N  *  C  G  F  G  C  P  K  H  S  W  L  Q  *  S  D  S  *  E  S  Y  D  P  I  K  *  Q  F  C  S  G  R  I  Q  E  E  *  L  *  T  C  L  F  G  *  R  *  Y  Q  *  Y  *  E  L  N  Y  I  G  D  Q  D  L  C  K  I  C  C  H  N  Q  E  I  S  L  P  Q  *  R  R  F  Y  H  W  S  N  E  Y  C  A  E  A  A  V  S  K  S  P  G  I  C  T  T  I  *  *  R  V  Y  I  S  S  M  G  L  L  L  R  F  V  Y  *  D  K  Q  L  C  S  W  S  W  C  *  W  S  C  Y  R  I  P  W  D  S  G  *  I  P  K :   E  P  L  F  S  I  Q  K  L  A  T  I  Y  E  P  C  S  T  W  E  S  P  G  T  H  D  C  S  V  Y  A  T  S  R  T  S  Q  P  R  A  R  C  K  *  C  D  *  A  T  T  S  T  C  C  K  D  K  P  K  *  R  R  W  F  Y  S  *  S  S  H  Y  S  S  K  W  P  I  L  S  C  C  *  H  S  H  E  L  S  C  S  S  S  S  N  F  H  G  I  L  M  T  I  S  T  L  V  P  P  F  C  T  I  C  F  A  I  L  L  I  K  P  P  S  G  D  Y  G  V  A  H  D  G  G  G  S  Q  L  I  *  H  M  I  V  S  L  Y  L  R  C  I  K  I  F  S  S  C  L  F  F  T  F  F  L  V  S  I  F  H  S  F  P  P  L  F  F  S  I  L  G  Q  I  E  W  V  S  G  V  Y  C  L  F  I  C  K  N  S  V  L  D  I  S  N  D  Q  F  S  *  Y  F  S  Y  T  A  F  L  Y  S  I  H  V  I  *  N  C  K  *  M  L  Q  T </first_frame>
            <second_frame>  F  M  Q  N  A  A  Y  L  A  K  Q  G  L  G  V  T  D  A  V  L  D  A  L  S  T  A  G  Y  N  N  Q  T  A  R  K  V  M  I  Q  S  N  D  S  S  V  L  E  E  F  K  K  S  S  Y  E  L  V  Y  L  V  D  D  N  I  S  D  I  K  N  S  T  I  L  E  I  K  T  F  A  K  S  V  V  I  T  K  K  S  V  F  P  S  E  D  A  F  I  I  G  Q  T  N  I  V  Q  K  L  Q  S  A  N  L  P  V  Y  V  R  L  F  N  N  E  F  I  S  Q  A  W  D  F  F  S  D  S  S  T  E  I  N  N  Y  V  L  G  A  G  V  D  G  L  V  T  E  Y  P  G  T  A  A  R  Y  R   : R  N  R  C  L  A  Y  K  N  L  P  P  Y  M  S  P  V  Q  P  G  S  L  L  G  L  M  T  V  Q  S  M  P  P  V  E  P  P  S  P  V  L  D  V  S  D  V  T  E  P  P  L  P  P  V  A  K  I  N  P  S  N  D  D  G  S  T  A  R  A  P  T  T  P  P  N  G  Q  S  S  V  V  A  S  I  L  M  S  S  V  A  V  L  L  A  I  F  M  V  Y  *  *  P  F  L  L  W  C  H  H  F  V  Q  F  V  L  P  S  Y  *  S  N  L  P  L  V  I  M  E  S  H  M  M  A  A  V  V  S  S  F  N  T  *  L  F  P  C  I  C  D  V  S  K  F  S  A  L  V  Y  S  L  H  S  S  S  F  L  F  F  I  P  S  L  P  F  F  F  P  F  W  V  R  L  S  G  C  L  G  F  I  A  Y  L  F  V  R  I  L  F  W  I  *  A  M  I  N  L  V  S  I  F  H  T  Q  P  F  Y  I  L  F  M  *  Y  K  I  A  N  K  C  C  R   </second_frame>
            <third_frame>   S  C  R  M  L  H  T  W  Q  S  R  D  *  V  *  L  M  R  F  W  M  P  *  A  Q  L  V  T  I  I  R  Q  L  G  K  L  *  S  N  Q  M  T  V  L  F  W  K  N  S  R  R  V  V  M  N  L  F  I  W  L  T  I  I  S  V  I  L  R  T  Q  L  Y  W  R  S  R  P  L  Q  N  L  L  S  *  P  R  N  Q  S  S  P  V  K  T  L  L  S  L  V  K  R  I  L  C  R  S  C  S  Q  Q  I  S  R  Y  M  Y  D  Y  L  I  T  S  L  Y  L  K  H  G  T  S  S  Q  I  R  L  L  R  *  T  T  M  F  L  E  L  V  L  M  V  L  L  Q  N  T  L  G  Q  R  L  D  T  E  :  G  T  V  V  *  H  T  K  T  C  H  H  I  *  A  L  F  N  L  G  V  S  W  D  S  *  L  F  S  L  C  H  Q  S  N  L  P  A  P  C  S  M  *  V  M  *  L  S  H  H  F  H  L  L  Q  R  *  T  Q  V  T  T  M  V  L  Q  L  E  L  P  L  L  L  Q  M  A  N  P  Q  L  L  L  A  F  S  *  A  Q  L  Q  F  F  *  Q  F  S  W  Y  I  D  D  H  F  Y  F  G  A  T  I  L  Y  N  L  F  C  H  L  T  D  Q  T  S  L  W  *  L  W  S  R  T  *  W  R  R  *  S  A  H  L  T  H  D  C  F  L  V  F  A  M  Y  Q  N  F  Q  L  L  F  I  L  Y  I  L  P  R  F  Y  F  S  F  L  P  S  P  F  F  F  H  F  G  S  D  *  V  G  V  W  G  L  L  P  I  Y  L  *  E  F  C  F  G  Y  K  Q  *  S  I  *  L  V  F  F  I  H  S  L  F  I  F  Y  S  C  N  I  K  L  Q  I  N  V  A  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25703" stop="26189"/>
                    <exon start="26445" stop="26743"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FMQNAAYLAKQGLGVTDAVLDALSTAGYNNQTARKVMIQSNDSSVLEEFKKSSYELVYLVDDNISDIKNSTILEIKTFAKSVVITKKSVFPSEDAFIIGQTNIVQKLQSANLPVYVRLFNNEFISQAWDFFSDSSTEINNYVLGAGVDGLVTEYPGTAARYRRNRCLAYKNLPPYMSPVQPGSLLGLMTVQSMPPVEPPSPVLDVSDVTEPPLPPVAKINPSNDDGSTARAPTTPPNGQSSVVASILMSSVAVLLAIFMVY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="7" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26863" stop="27066"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HMIVSLYLRCIKIFSSCLFFTFFLVSIFHSFPPLFFSILGQIEWVSGVYCLFICKNSVLDISNDQFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="26431" e_stop="27135"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="26431" e_stop="27135" e_length="705"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26431" stop="27086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26445" stop="26925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26495" stop="26969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26513" stop="27135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="8" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGGAATGTACAGGGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTTTTCCATTTTGGGTCAGATTGAGTGGGTGTCTGGGGTTTATTGCCTATTTATTTGTAAGAATTCTGTTTTGGATATAAGCAATGATCAATTTAGTTAGTATTTTTCATACACAGCCTTTTTATATTCTATTCATGTAATATAAAATTGCAAATAAATGTTGCAGACC</gDNA_template>
            <first_frame> L  G  M  Y  R  E  P  L  F  S  I  Q  K  L  A  T  I  Y  E  P  C  S  T  W  E  S  P  G  T  H  D  C  S  V  Y  A  T  S  R  T  S  Q  P  R  A  R  C  K  *  C  D  *  A  T  T  S  T  C  C  K  D  K  P  K  *  R  R  W  F  Y  S  *  S  S  H  Y  S  S  K  W  P  I  L  S  C  C  *  H  S  H  E  L  S  C  S  S  S  S  N  F  H  G  I  L  M  T  I  S  T  L  V  P  P  F  C  T  I  C  F  A  I  L  L  I  K  P  P  S  G  D  Y  G  V  A  H  D  G  G  G  S  Q  L  I  *  H  M  I  V  S  L  Y  L  R  C  I  K  I  F  S  S  C  L  F  F  T  F  F  L  V  S  I  F  H  S  F  P  P  L  F  F  S  I  L  G  Q  I  E  W  V  S  G  V  Y  C  L  F  I  C  K  N  S  V  L  D  I  S  N  D  Q  F  S  *  Y  F  S  Y  T  A  F  L  Y  S  I  H  V  I  *  N  C  K  *  M  L  Q  T </first_frame>
            <second_frame>  W  E  C  T  G  N  R  C  L  A  Y  K  N  L  P  P  Y  M  S  P  V  Q  P  G  S  L  L  G  L  M  T  V  Q  S  M  P  P  V  E  P  P  S  P  V  L  D  V  S  D  V  T  E  P  P  L  P  P  V  A  K  I  N  P  S  N  D  D  G  S  T  A  R  A  P  T  T  P  P  N  G  Q  S  S  V  V  A  S  I  L  M  S  S  V  A  V  L  L  A  I  F  M  V  Y  *  *  P  F  L  L  W  C  H  H  F  V  Q  F  V  L  P  S  Y  *  S  N  L  P  L  V  I  M  E  S  H  M  M  A  A  V  V  S  S  F  N  T  *  L  F  P  C  I  C  D  V  S  K  F  S  A  L  V  Y  S  L  H  S  S  S  F  L  F  F  I  P  S  L  P  F  F  F  P  F  W  V  R  L  S  G  C  L  G  F  I  A  Y  L  F  V  R  I  L  F  W  I  *  A  M  I  N  L  V  S  I  F  H  T  Q  P  F  Y  I  L  F  M  *  Y  K  I  A  N  K  C  C  R   </second_frame>
            <third_frame>   G  N  V  Q  G  T  V  V  *  H  T  K  T  C  H  H  I  *  A  L  F  N  L  G  V  S  W  D  S  *  L  F  S  L  C  H  Q  S  N  L  P  A  P  C  S  M  *  V  M  *  L  S  H  H  F  H  L  L  Q  R  *  T  Q  V  T  T  M  V  L  Q  L  E  L  P  L  L  L  Q  M  A  N  P  Q  L  L  L  A  F  S  *  A  Q  L  Q  F  F  *  Q  F  S  W  Y  I  D  D  H  F  Y  F  G  A  T  I  L  Y  N  L  F  C  H  L  T  D  Q  T  S  L  W  *  L  W  S  R  T  *  W  R  R  *  S  A  H  L  T  H  D  C  F  L  V  F  A  M  Y  Q  N  F  Q  L  L  F  I  L  Y  I  L  P  R  F  Y  F  S  F  L  P  S  P  F  F  F  H  F  G  S  D  *  V  G  V  W  G  L  L  P  I  Y  L  *  E  F  C  F  G  Y  K  Q  *  S  I  *  L  V  F  F  I  H  S  L  F  I  F  Y  S  C  N  I  K  L  Q  I  N  V  A  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26432" stop="26743"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WECTGNRCLAYKNLPPYMSPVQPGSLLGLMTVQSMPPVEPPSPVLDVSDVTEPPLPPVAKINPSNDDGSTARAPTTPPNGQSSVVASILMSSVAVLLAIFMVY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="8" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26863" stop="27066"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HMIVSLYLRCIKIFSSCLFFTFFLVSIFHSFPPLFFSILGQIEWVSGVYCLFICKNSVLDISNDQFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="27087" PGL_stop="26444"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27087" e_stop="26444"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="27087" e_stop="26444" e_length="644"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27087" stop="26824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27083" stop="26444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27050" stop="26551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419491" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGGCTGTGTATGAAAAATACTAACTAAATTGATCATTGCTTATATCCAAAACAGAATTCTTACAAATAAATAGGCAATAAACCCCAGACACCCACTCAATCTGACCCAAAATGGAAAAAAAAAGGGGAGGGAAGGAATGAAAAATAGAAACGAGGAAGAATGTAAAGAATAAACAAGAGCTGAAAATTTTGATACATCGCAAATACAAGGAAACAATCATGTGTTAAATGAGCTGACTACCGCCGCCATCATGTGCGACTCCATAATCACCAGAGGGAGGTTTGATCAGTAAGATGGCAAAACAAATTGTACAAAATGGTGGCACCAAAGTAGAAATGGTCATCAATATACCATGAAAATTGCTAGAAGAACTGCAACTGAGCTCATGAGAATGCTAGCAACAACTGAGGATTGGCCATTTGGAGGAGTAGTGGGAGCTCTAGCTGTAGAACCATCGTCGTTACTTGGGTTTATCTTTGCAACAGGTGGAAGTGGTGGCTCAGTCACATCACTTACATCGAGCACGGGGCTGGGAGGTTCGACTGGTGGCATAGACTGAACAGTCATGAGTCCCAGGAGACTCCCAGGTTGAACAGGGCTCATATATGGTGGCAAGTTTTTGTATGCTAAACAACGGTTCCC</gDNA_template>
            <first_frame> K  G  C  V  *  K  I  L  T  K  L  I  I  A  Y  I  Q  N  R  I  L  T  N  K  *  A  I  N  P  R  H  P  L  N  L  T  Q  N  G  K  K  K  G  R  E  G  M  K  N  R  N  E  E  E  C  K  E  *  T  R  A  E  N  F  D  T  S  Q  I  Q  G  N  N  H  V  L  N  E  L  T  T  A  A  I  M  C  D  S  I  I  T  R  G  R  F  D  Q  *  D  G  K  T  N  C  T  K  W  W  H  Q  S  R  N  G  H  Q  Y  T  M  K  I  A  R  R  T  A  T  E  L  M  R  M  L  A  T  T  E  D  W  P  F  G  G  V  V  G  A  L  A  V  E  P  S  S  L  L  G  F  I  F  A  T  G  G  S  G  G  S  V  T  S  L  T  S  S  T  G  L  G  G  S  T  G  G  I  D  *  T  V  M  S  P  R  R  L  P  G  *  T  G  L  I  Y  G  G  K  F  L  Y  A  K  Q  R  F   </first_frame>
            <second_frame>  K  A  V  Y  E  K  Y  *  L  N  *  S  L  L  I  S  K  T  E  F  L  Q  I  N  R  Q  *  T  P  D  T  H  S  I  *  P  K  M  E  K  K  R  G  G  K  E  *  K  I  E  T  R  K  N  V  K  N  K  Q  E  L  K  I  L  I  H  R  K  Y  K  E  T  I  M  C  *  M  S  *  L  P  P  P  S  C  A  T  P  *  S  P  E  G  G  L  I  S  K  M  A  K  Q  I  V  Q  N  G  G  T  K  V  E  M  V  I  N  I  P  *  K  L  L  E  E  L  Q  L  S  S  *  E  C  *  Q  Q  L  R  I  G  H  L  E  E  *  W  E  L  *  L  *  N  H  R  R  Y  L  G  L  S  L  Q  Q  V  E  V  V  A  Q  S  H  H  L  H  R  A  R  G  W  E  V  R  L  V  A  *  T  E  Q  S  *  V  P  G  D  S  Q  V  E  Q  G  S  Y  M  V  A  S  F  C  M  L  N  N  G  S  </second_frame>
            <third_frame>   R  L  C  M  K  N  T  N  *  I  D  H  C  L  Y  P  K  Q  N  S  Y  K  *  I  G  N  K  P  Q  T  P  T  Q  S  D  P  K  W  K  K  K  G  E  G  R  N  E  K  *  K  R  G  R  M  *  R  I  N  K  S  *  K  F  *  Y  I  A  N  T  R  K  Q  S  C  V  K  *  A  D  Y  R  R  H  H  V  R  L  H  N  H  Q  R  E  V  *  S  V  R  W  Q  N  K  L  Y  K  M  V  A  P  K  *  K  W  S  S  I  Y  H  E  N  C  *  K  N  C  N  *  A  H  E  N  A  S  N  N  *  G  L  A  I  W  R  S  S  G  S  S  S  C  R  T  I  V  V  T  W  V  Y  L  C  N  R  W  K  W  W  L  S  H  I  T  Y  I  E  H  G  A  G  R  F  D  W  W  H  R  L  N  S  H  E  S  Q  E  T  P  R  L  N  R  A  H  I  W  W  Q  V  F  V  C  *  T  T  V  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26793" stop="26527"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGKTNCTKWWHQSRNGHQYTMKIARRTATELMRMLATTEDWPFGGVVGALAVEPSSLLGFIFATGGSGGSVTSLTSSTGLGGSTGGID*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26677" stop="26456"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLAIWRSSGSSSCRTIVVTWVYLCNRWKWWLSHITYIEHGAGRFDWWHRLNSHESQETPRLNRAHIWWQVFVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="29594" PGL_stop="29089"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29594" e_stop="29089"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="29594" e_stop="29089" e_length="506"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29594" stop="29089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29534" stop="29132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225967" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29389" stop="29104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29380" stop="29136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226255" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCCAATTTCCGGAAAGACCTCTCAGTTGAGGATTGGAGACTTGTCATGAAACTGAAGACCCTCTTTAAGATACAATGAGACAGGTTTTTGTAGCTTGTAAAGGGGTTGATTCTTGGTTCTCCAATAAGCTCCATCTTAGGGGCTTAGCAGTTCATTGAGCAATAAGTGGTGATTTGAGTGTAAACGAAGGAGGTCTGGACATAATGTTCATGCCACCTCAGAGACAGAAATGAGCAAAAGTGAAGAATGCAATTGTTGCTGCCTGCTGCAACTGATTTCTTTTGGTCGGTACTCCGAGCATTCTGTGTATGCTGTTTTTGGTACTGAAGTGAGATTTATGCCACATTGACCAATGTCAGAGTTGTACAGGGGCACAAAACGGCAACACATTTTTTCATAATACAGAGATGTAATATTGACTTTTTGATATATACCAAAAACCGTGCAAAAGATTATTGGTTGGTTATTTGTTGGCAAGTTTTTCATACAAATATCAAATTCAATT</gDNA_template>
            <first_frame> I  Q  F  P  E  R  P  L  S  *  G  L  E  T  C  H  E  T  E  D  P  L  *  D  T  M  R  Q  V  F  V  A  C  K  G  V  D  S  W  F  S  N  K  L  H  L  R  G  L  A  V  H  *  A  I  S  G  D  L  S  V  N  E  G  G  L  D  I  M  F  M  P  P  Q  R  Q  K  *  A  K  V  K  N  A  I  V  A  A  C  C  N  *  F  L  L  V  G  T  P  S  I  L  C  M  L  F  L  V  L  K  *  D  L  C  H  I  D  Q  C  Q  S  C  T  G  A  Q  N  G  N  T  F  F  H  N  T  E  M  *  Y  *  L  F  D  I  Y  Q  K  P  C  K  R  L  L  V  G  Y  L  L  A  S  F  S  Y  K  Y  Q  I  Q   </first_frame>
            <second_frame>  S  N  F  R  K  D  L  S  V  E  D  W  R  L  V  M  K  L  K  T  L  F  K  I  Q  *  D  R  F  L  *  L  V  K  G  L  I  L  G  S  P  I  S  S  I  L  G  A  *  Q  F  I  E  Q  *  V  V  I  *  V  *  T  K  E  V  W  T  *  C  S  C  H  L  R  D  R  N  E  Q  K  *  R  M  Q  L  L  L  P  A  A  T  D  F  F  W  S  V  L  R  A  F  C  V  C  C  F  W  Y  *  S  E  I  Y  A  T  L  T  N  V  R  V  V  Q  G  H  K  T  A  T  H  F  F  I  I  Q  R  C  N  I  D  F  L  I  Y  T  K  N  R  A  K  D  Y  W  L  V  I  C  W  Q  V  F  H  T  N  I  K  F  N  </second_frame>
            <third_frame>   P  I  S  G  K  T  S  Q  L  R  I  G  D  L  S  *  N  *  R  P  S  L  R  Y  N  E  T  G  F  C  S  L  *  R  G  *  F  L  V  L  Q  *  A  P  S  *  G  L  S  S  S  L  S  N  K  W  *  F  E  C  K  R  R  R  S  G  H  N  V  H  A  T  S  E  T  E  M  S  K  S  E  E  C  N  C  C  C  L  L  Q  L  I  S  F  G  R  Y  S  E  H  S  V  Y  A  V  F  G  T  E  V  R  F  M  P  H  *  P  M  S  E  L  Y  R  G  T  K  R  Q  H  I  F  S  *  Y  R  D  V  I  L  T  F  *  Y  I  P  K  T  V  Q  K  I  I  G  W  L  F  V  G  K  F  F  I  Q  I  S  N  S  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0184E04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="39303" PGL_stop="35588"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39303" e_stop="38580"/>
            <exon e_start="37474" e_stop="37325"/>
            <exon e_start="36788" e_stop="35588"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.935" acc_prob="0.990" e_score="0.999"/>
          <exon-intron don_prob="0.984" acc_prob="0.909" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="39303" e_stop="38580" e_length="724"/>
          </exon>
          <intron i_serial="1" don_prob="0.935" acc_prob="0.990">
            <gDNA_intron_boundary i_start="38579" i_stop="37475" i_length="1105"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37474" e_stop="37325" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.909">
            <gDNA_intron_boundary i_start="37324" i_stop="36789" i_length="536"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="36788" e_stop="35588" e_length="1201"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39303" stop="38580"/>
              <exon start="37474" stop="37325"/>
              <exon start="36788" stop="35596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39266" stop="38595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39214" stop="38632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39214" stop="38800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39192" stop="38672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36508" stop="35809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36165" stop="35588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404516" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAGAGAGAGGGGAAGAAGAAGATGAACAAGAAGAAGCTGAAAATTCTTCTTTCTCTCTTTGCTCTCAACACAATTACTCTTTATCTCTACTTCTCTTCACACCCAGATCATTTCCGCCACAATTTCCCTAAAAACCACTATATTACTACCGGAAACCGCTTTTCTTCATCGGAAAACCATCCAAATTTGCACTCCTCCGTTGCTTCCCAATCCAAACCATGGCCTATTTTGCCGTCTTACCTCCCTTGGTCTCAGAACCCCAACGTTGGTTGGAGATCGTGTGAGGGTTATTTTGGAAATGGGTTTACTCGTAAAATCGATCTTCTCAAAGCCTCGCCGGAGATTCACCGGAAATTCGGTGAAAACAGATATTTCGGTGAAGGAGGAGTAGGAGGGTGGTTTAGGTGTTTTTTCAGTGAGACATTGCAGAGTTCGATTTGTGAAGGAGGGGTAATAAGAATGAATCCGGAGAAAATTTTGATGTCTAAAGGAGGAGAGAAATTGGAAGAAGTAATAGGAAGGGGAGAAGAAGAAGAGTTACCCATTTTTGAAAATGGAGCTTTTGAGATAGAGGTTAATGAAAGAACAAAAATTGGGAAAAAATTAGCTGATGAAAATTTCTTGAATAAATATTTACCTGAAGGTGCAGTCTCAAAGCACACTATGAGGGAATTAATCGACTCGATTCGATTAGTTGACGCCAATGATTTTCATTGTTCTGAG : TGGATTGAGGAGCCATCACTTTTGATTACCCGATTTGAGTATGCAAATCTTTTTCATACAATTACTGATTGGTATAGTGCATACGCGGCATCCAGAGTTACTGGCTTACCCAGTCGGCCACATTTGGTTTTTGTAGATGGCCATTGTGAG : ACACAATTGGAGGAAACATGGAGAGCACTGTTTTCAAGCCTCACTTATGCTAAAAACTTTAGCGGTCCGGTTTGTTTTCGCCATGCTATCCTCTCGCCGTTGGGATATGAAACTGCCCTGTTTAAGGGGCTTTCAGAAAGTATCGGTTGTACTGGAGCTCCTGCCCATGATTTGTGGCAAAATCCCAGTGATAGTAAAACTGCACGGTTGTCCGAGTTTGGAGAGATGATCAGAGCAGCCTTTGGATTTCCTGTGGATAGACAGAACATCCCAAGGACAGTCACTGGCCACAATGTCCTCTTTGTTAGACGCGAGGATTATTTAGCTCACCCACGTCATGGCGGAAAGGTACAGTCTAGGCTTAGCAATGAACAAGAAGTATTTGATTCCATAAAGAGCTGGTCCTTGAACCACACAGAGTGCAAAGTAAATGTGATTAACGGATTATTTGCCCACATGTCCATGAAAGATCAAGTTCGAGCAATCCAAGATGCTTCTGTCATTGTAGGTGCTCATGGAGCAGGTCTAACGCACATTGTTTCTGCATCACCAAAAGCTGTTATACTAGAAATCATAAGCAGTGAATATAGGCGCCCCCATTTTTCTCTGATTGCTTATTGGAAAGGATTGGAGTACCATCCCATTGATTTGGAGGGATCTTATGCGGATCCACCAGTCGTAATTGACAAGCTCAACAGTATTTTGAGGAGTCTTGGCTGCTAAATCTACTCAACAGTTTGAACAGTTCAACTTTTCTCTACAAGACTGGAATTTGGAGCCTGAAAATCTTGTAAAATATGTTTCATCTGCAGTTCTATAGTTTTGCTGCATTCTTGATCCTCAATCCGGTGTTCACAAGCTTCACAGGTTCTGGCAGTTACTAATTTATTAGCCCCTCTCAGTTATGAACTCTCAGAACGATCGTTATGGTGAGCTCATTCAAGATATTCTTTATGGTGCAATATTACAAGTCACTCGCGATACACACATTTGTAAATCACATTATAGGTGTGTACAACTTCATTACAATTCGTTGTCAATTGTTTTCTGCAATTTATTATCTTCTTGTTCTGGGAAGACACAGATTAACAAGCATGTTGAAGTAGCAGATTAACAAGAACCTCAGTGTACTGTTCAGTGATGTATGATTGTAACTTGTAACAAAACAAAAGAAATGAGACATTTAACAAGAAATTTTCGC</gDNA_template>
            <first_frame> *  E  R  G  E  E  E  D  E  Q  E  E  A  E  N  S  S  F  S  L  C  S  Q  H  N  Y  S  L  S  L  L  L  F  T  P  R  S  F  P  P  Q  F  P  *  K  P  L  Y  Y  Y  R  K  P  L  F  F  I  G  K  P  S  K  F  A  L  L  R  C  F  P  I  Q  T  M  A  Y  F  A  V  L  P  P  L  V  S  E  P  Q  R  W  L  E  I  V  *  G  L  F  W  K  W  V  Y  S  *  N  R  S  S  Q  S  L  A  G  D  S  P  E  I  R  *  K  Q  I  F  R  *  R  R  S  R  R  V  V  *  V  F  F  Q  *  D  I  A  E  F  D  L  *  R  R  G  N  K  N  E  S  G  E  N  F  D  V  *  R  R  R  E  I  G  R  S  N  R  K  G  R  R  R  R  V  T  H  F  *  K  W  S  F  *  D  R  G  *  *  K  N  K  N  W  E  K  I  S  *  *  K  F  L  E  *  I  F  T  *  R  C  S  L  K  A  H  Y  E  G  I  N  R  L  D  S  I  S  *  R  Q  *  F  S  L  F  *   : V  D  *  G  A  I  T  F  D  Y  P  I  *  V  C  K  S  F  S  Y  N  Y  *  L  V  *  C  I  R  G  I  Q  S  Y  W  L  T  Q  S  A  T  F  G  F  C  R  W  P  L  *   : D  T  I  G  G  N  M  E  S  T  V  F  K  P  H  L  C  *  K  L  *  R  S  G  L  F  S  P  C  Y  P  L  A  V  G  I  *  N  C  P  V  *  G  A  F  R  K  Y  R  L  Y  W  S  S  C  P  *  F  V  A  K  S  Q  *  *  *  N  C  T  V  V  R  V  W  R  D  D  Q  S  S  L  W  I  S  C  G  *  T  E  H  P  K  D  S  H  W  P  Q  C  P  L  C  *  T  R  G  L  F  S  S  P  T  S  W  R  K  G  T  V  *  A  *  Q  *  T  R  S  I  *  F  H  K  E  L  V  L  E  P  H  R  V  Q  S  K  C  D  *  R  I  I  C  P  H  V  H  E  R  S  S  S  S  N  P  R  C  F  C  H  C  R  C  S  W  S  R  S  N  A  H  C  F  C  I  T  K  S  C  Y  T  R  N  H  K  Q  *  I  *  A  P  P  F  F  S  D  C  L  L  E  R  I  G  V  P  S  H  *  F  G  G  I  L  C  G  S  T  S  R  N  *  Q  A  Q  Q  Y  F  E  E  S  W  L  L  N  L  L  N  S  L  N  S  S  T  F  L  Y  K  T  G  I  W  S  L  K  I  L  *  N  M  F  H  L  Q  F  Y  S  F  A  A  F  L  I  L  N  P  V  F  T  S  F  T  G  S  G  S  Y  *  F  I  S  P  S  Q  L  *  T  L  R  T  I  V  M  V  S  S  F  K  I  F  F  M  V  Q  Y  Y  K  S  L  A  I  H  T  F  V  N  H  I  I  G  V  Y  N  F  I  T  I  R  C  Q  L  F  S  A  I  Y  Y  L  L  V  L  G  R  H  R  L  T  S  M  L  K  *  Q  I  N  K  N  L  S  V  L  F  S  D  V  *  L  *  L  V  T  K  Q  K  K  *  D  I  *  Q  E  I  F   </first_frame>
            <second_frame>  E  R  E  G  K  K  K  M  N  K  K  K  L  K  I  L  L  S  L  F  A  L  N  T  I  T  L  Y  L  Y  F  S  S  H  P  D  H  F  R  H  N  F  P  K  N  H  Y  I  T  T  G  N  R  F  S  S  S  E  N  H  P  N  L  H  S  S  V  A  S  Q  S  K  P  W  P  I  L  P  S  Y  L  P  W  S  Q  N  P  N  V  G  W  R  S  C  E  G  Y  F  G  N  G  F  T  R  K  I  D  L  L  K  A  S  P  E  I  H  R  K  F  G  E  N  R  Y  F  G  E  G  G  V  G  G  W  F  R  C  F  F  S  E  T  L  Q  S  S  I  C  E  G  G  V  I  R  M  N  P  E  K  I  L  M  S  K  G  G  E  K  L  E  E  V  I  G  R  G  E  E  E  E  L  P  I  F  E  N  G  A  F  E  I  E  V  N  E  R  T  K  I  G  K  K  L  A  D  E  N  F  L  N  K  Y  L  P  E  G  A  V  S  K  H  T  M  R  E  L  I  D  S  I  R  L  V  D  A  N  D  F  H  C  S  E  :  W  I  E  E  P  S  L  L  I  T  R  F  E  Y  A  N  L  F  H  T  I  T  D  W  Y  S  A  Y  A  A  S  R  V  T  G  L  P  S  R  P  H  L  V  F  V  D  G  H  C  E  :  T  Q  L  E  E  T  W  R  A  L  F  S  S  L  T  Y  A  K  N  F  S  G  P  V  C  F  R  H  A  I  L  S  P  L  G  Y  E  T  A  L  F  K  G  L  S  E  S  I  G  C  T  G  A  P  A  H  D  L  W  Q  N  P  S  D  S  K  T  A  R  L  S  E  F  G  E  M  I  R  A  A  F  G  F  P  V  D  R  Q  N  I  P  R  T  V  T  G  H  N  V  L  F  V  R  R  E  D  Y  L  A  H  P  R  H  G  G  K  V  Q  S  R  L  S  N  E  Q  E  V  F  D  S  I  K  S  W  S  L  N  H  T  E  C  K  V  N  V  I  N  G  L  F  A  H  M  S  M  K  D  Q  V  R  A  I  Q  D  A  S  V  I  V  G  A  H  G  A  G  L  T  H  I  V  S  A  S  P  K  A  V  I  L  E  I  I  S  S  E  Y  R  R  P  H  F  S  L  I  A  Y  W  K  G  L  E  Y  H  P  I  D  L  E  G  S  Y  A  D  P  P  V  V  I  D  K  L  N  S  I  L  R  S  L  G  C  *  I  Y  S  T  V  *  T  V  Q  L  F  S  T  R  L  E  F  G  A  *  K  S  C  K  I  C  F  I  C  S  S  I  V  L  L  H  S  *  S  S  I  R  C  S  Q  A  S  Q  V  L  A  V  T  N  L  L  A  P  L  S  Y  E  L  S  E  R  S  L  W  *  A  H  S  R  Y  S  L  W  C  N  I  T  S  H  S  R  Y  T  H  L  *  I  T  L  *  V  C  T  T  S  L  Q  F  V  V  N  C  F  L  Q  F  I  I  F  L  F  W  E  D  T  D  *  Q  A  C  *  S  S  R  L  T  R  T  S  V  Y  C  S  V  M  Y  D  C  N  L  *  Q  N  K  R  N  E  T  F  N  K  K  F  S  </second_frame>
            <third_frame>   R  E  R  G  R  R  R  *  T  R  R  S  *  K  F  F  F  L  S  L  L  S  T  Q  L  L  F  I  S  T  S  L  H  T  Q  I  I  S  A  T  I  S  L  K  T  T  I  L  L  P  E  T  A  F  L  H  R  K  T  I  Q  I  C  T  P  P  L  L  P  N  P  N  H  G  L  F  C  R  L  T  S  L  G  L  R  T  P  T  L  V  G  D  R  V  R  V  I  L  E  M  G  L  L  V  K  S  I  F  S  K  P  R  R  R  F  T  G  N  S  V  K  T  D  I  S  V  K  E  E  *  E  G  G  L  G  V  F  S  V  R  H  C  R  V  R  F  V  K  E  G  *  *  E  *  I  R  R  K  F  *  C  L  K  E  E  R  N  W  K  K  *  *  E  G  E  K  K  K  S  Y  P  F  L  K  M  E  L  L  R  *  R  L  M  K  E  Q  K  L  G  K  N  *  L  M  K  I  S  *  I  N  I  Y  L  K  V  Q  S  Q  S  T  L  *  G  N  *  S  T  R  F  D  *  L  T  P  M  I  F  I  V  L  S :   G  L  R  S  H  H  F  *  L  P  D  L  S  M  Q  I  F  F  I  Q  L  L  I  G  I  V  H  T  R  H  P  E  L  L  A  Y  P  V  G  H  I  W  F  L  *  M  A  I  V  R :   H  N  W  R  K  H  G  E  H  C  F  Q  A  S  L  M  L  K  T  L  A  V  R  F  V  F  A  M  L  S  S  R  R  W  D  M  K  L  P  C  L  R  G  F  Q  K  V  S  V  V  L  E  L  L  P  M  I  C  G  K  I  P  V  I  V  K  L  H  G  C  P  S  L  E  R  *  S  E  Q  P  L  D  F  L  W  I  D  R  T  S  Q  G  Q  S  L  A  T  M  S  S  L  L  D  A  R  I  I  *  L  T  H  V  M  A  E  R  Y  S  L  G  L  A  M  N  K  K  Y  L  I  P  *  R  A  G  P  *  T  T  Q  S  A  K  *  M  *  L  T  D  Y  L  P  T  C  P  *  K  I  K  F  E  Q  S  K  M  L  L  S  L  *  V  L  M  E  Q  V  *  R  T  L  F  L  H  H  Q  K  L  L  Y  *  K  S  *  A  V  N  I  G  A  P  I  F  L  *  L  L  I  G  K  D  W  S  T  I  P  L  I  W  R  D  L  M  R  I  H  Q  S  *  L  T  S  S  T  V  F  *  G  V  L  A  A  K  S  T  Q  Q  F  E  Q  F  N  F  S  L  Q  D  W  N  L  E  P  E  N  L  V  K  Y  V  S  S  A  V  L  *  F  C  C  I  L  D  P  Q  S  G  V  H  K  L  H  R  F  W  Q  L  L  I  Y  *  P  L  S  V  M  N  S  Q  N  D  R  Y  G  E  L  I  Q  D  I  L  Y  G  A  I  L  Q  V  T  R  D  T  H  I  C  K  S  H  Y  R  C  V  Q  L  H  Y  N  S  L  S  I  V  F  C  N  L  L  S  S  C  S  G  K  T  Q  I  N  K  H  V  E  V  A  D  *  Q  E  P  Q  C  T  V  Q  *  C  M  I  V  T  C  N  K  T  K  E  M  R  H  L  T  R  N  F  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39302" stop="38580"/>
                    <exon start="37474" stop="37325"/>
                    <exon start="36788" stop="36066"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1593</number_coding_nucleotides>
                  <number_encoded_amino_acids>531</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EREGKKKMNKKKLKILLSLFALNTITLYLYFSSHPDHFRHNFPKNHYITTGNRFSSSENHPNLHSSVASQSKPWPILPSYLPWSQNPNVGWRSCEGYFGNGFTRKIDLLKASPEIHRKFGENRYFGEGGVGGWFRCFFSETLQSSICEGGVIRMNPEKILMSKGGEKLEEVIGRGEEEELPIFENGAFEIEVNERTKIGKKLADENFLNKYLPEGAVSKHTMRELIDSIRLVDANDFHCSEWIEEPSLLITRFEYANLFHTITDWYSAYAASRVTGLPSRPHLVFVDGHCETQLEETWRALFSSLTYAKNFSGPVCFRHAILSPLGYETALFKGLSESIGCTGAPAHDLWQNPSDSKTARLSEFGEMIRAAFGFPVDRQNIPRTVTGHNVLFVRREDYLAHPRHGGKVQSRLSNEQEVFDSIKSWSLNHTECKVNVINGLFAHMSMKDQVRAIQDASVIVGAHGAGLTHIVSASPKAVILEIISSEYRRPHFSLIAYWKGLEYHPIDLEGSYADPPVVIDKLNSILRSLGC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35896" stop="35675"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLSVMNSQNDRYGELIQDILYGAILQVTRDTHICKSHYRCVQLHYNSLSIVFCNLLSSCSGKTQINKHVEVAD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="43475" PGL_stop="43028"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43475" e_stop="43028"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="43475" e_stop="43028" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43475" stop="43154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43475" stop="43185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43474" stop="43028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTTTATAGCAAAAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAAGTGTATAATTCGCAATTGTATAGTTCGTTGGCCTTTTTCTCTGCAATTTTTGAAGTAAAATATTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGATAGTGGCGAGCGAGATTCCTGGAAGAGAGACGCTGACAAATTTTAGATAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCTATTTAATTTAAGTTATTAA</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  F  I  A  K  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  K  C  I  I  R  N  C  I  V  R  W  P  F  S  L  Q  F  L  K  *  N  I  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  I  I  H  F  C  V  *  S  E  R  G  E  R  E  W  I  V  A  S  E  I  P  G  R  E  T  L  T  N  F  R  *  C  L  L  W  S  T  I  K  S  N  P  S  Y  S  I  *  F  K  L  L  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  L  *  Q  K  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  S  V  *  F  A  I  V  *  F  V  G  L  F  L  C  N  F  *  S  K  I  F  V  N  C  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  L  Y  T  S  V  Y  K  A  R  E  A  S  E  N  G  *  W  R  A  R  F  L  E  E  R  R  *  Q  I  L  D  N  V  C  Y  G  A  Q  L  N  Q  T  L  A  I  L  F  N  L  S  Y  * </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  V  Y  N  S  Q  L  Y  S  S  L  A  F  F  S  A  I  F  E  V  K  Y  L  *  I  V  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  N  Y  T  L  L  C  I  K  R  E  R  R  A  R  M  D  S  G  E  R  D  S  W  K  R  D  A  D  K  F  *  I  M  F  A  M  E  H  N  *  I  K  P  *  L  F  Y  L  I  *  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0184E04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="47481" PGL_stop="46856"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47481" e_stop="46856"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47481" e_stop="46856" e_length="626"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47481" stop="46856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47480" stop="47250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239872" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGAAACTGTCACCTACATGTTGCAGGTAATTTATTTTCAATTTTACACTTTTTATAAAAATAAAATCAGAAAAAAAAGAAGCAAATTAAGATATTAGACCTAATCCATCGAAGCCTCTATTGGATAGACTGAACGAACTGTCCAATGGTAATGAATAAGGAACCATTTGCGGAGATTGATTCAAGGGATTAACTTTATTTGACCTTATTAAAGCTGAAAAGAAATTTCATTTAAACCCTTTAATTAAACGGTATTTATTTTAGATACTTTATATCGGCTTGTGTCTCTTTTCATATGATGTTGGTGCAAATTAGTTTCCACGTTTCATAAAATTAAAGGAGTAGTTGAATAAATGTGATTGTTCAACTTAAAAGGATCAAAATAAATATGTTTAACTTATAAATGACTTAGATTAATTTATGTTTGAACAGTCAGCACATAAATGTCCATTTTGTTTTTGTATCCTAAATTTCATGATGTTGAAAATTATTTAGGTAAACAACATTTATATGTTAAAATTTCATATTAATTGAAATTAAAGCAAGTTTTTTTTTATTTTTATATTTAATATTATTATTTGTACAAAAGGGAGGCTCAGAGGCGAAACCATCTTATACTAGGAGT</gDNA_template>
            <first_frame> F  E  T  V  T  Y  M  L  Q  V  I  Y  F  Q  F  Y  T  F  Y  K  N  K  I  R  K  K  R  S  K  L  R  Y  *  T  *  S  I  E  A  S  I  G  *  T  E  R  T  V  Q  W  *  *  I  R  N  H  L  R  R  L  I  Q  G  I  N  F  I  *  P  Y  *  S  *  K  E  I  S  F  K  P  F  N  *  T  V  F  I  L  D  T  L  Y  R  L  V  S  L  F  I  *  C  W  C  K  L  V  S  T  F  H  K  I  K  G  V  V  E  *  M  *  L  F  N  L  K  G  S  K  *  I  C  L  T  Y  K  *  L  R  L  I  Y  V  *  T  V  S  T  *  M  S  I  L  F  L  Y  P  K  F  H  D  V  E  N  Y  L  G  K  Q  H  L  Y  V  K  I  S  Y  *  L  K  L  K  Q  V  F  F  Y  F  Y  I  *  Y  Y  Y  L  Y  K  R  E  A  Q  R  R  N  H  L  I  L  G   </first_frame>
            <second_frame>  L  K  L  S  P  T  C  C  R  *  F  I  F  N  F  T  L  F  I  K  I  K  S  E  K  K  E  A  N  *  D  I  R  P  N  P  S  K  P  L  L  D  R  L  N  E  L  S  N  G  N  E  *  G  T  I  C  G  D  *  F  K  G  L  T  L  F  D  L  I  K  A  E  K  K  F  H  L  N  P  L  I  K  R  Y  L  F  *  I  L  Y  I  G  L  C  L  F  S  Y  D  V  G  A  N  *  F  P  R  F  I  K  L  K  E  *  L  N  K  C  D  C  S  T  *  K  D  Q  N  K  Y  V  *  L  I  N  D  L  D  *  F  M  F  E  Q  S  A  H  K  C  P  F  C  F  C  I  L  N  F  M  M  L  K  I  I  *  V  N  N  I  Y  M  L  K  F  H  I  N  *  N  *  S  K  F  F  F  I  F  I  F  N  I  I  I  C  T  K  G  R  L  R  G  E  T  I  L  Y  *  E  </second_frame>
            <third_frame>   *  N  C  H  L  H  V  A  G  N  L  F  S  I  L  H  F  L  *  K  *  N  Q  K  K  K  K  Q  I  K  I  L  D  L  I  H  R  S  L  Y  W  I  D  *  T  N  C  P  M  V  M  N  K  E  P  F  A  E  I  D  S  R  D  *  L  Y  L  T  L  L  K  L  K  R  N  F  I  *  T  L  *  L  N  G  I  Y  F  R  Y  F  I  S  A  C  V  S  F  H  M  M  L  V  Q  I  S  F  H  V  S  *  N  *  R  S  S  *  I  N  V  I  V  Q  L  K  R  I  K  I  N  M  F  N  L  *  M  T  *  I  N  L  C  L  N  S  Q  H  I  N  V  H  F  V  F  V  S  *  I  S  *  C  *  K  L  F  R  *  T  T  F  I  C  *  N  F  I  L  I  E  I  K  A  S  F  F  L  F  L  Y  L  I  L  L  F  V  Q  K  G  G  S  E  A  K  P  S  Y  T  R  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0184E04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="52393" PGL_stop="50107"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52393" e_stop="52334"/>
            <exon e_start="52217" e_stop="52145"/>
            <exon e_start="51219" e_stop="50883"/>
            <exon e_start="50651" e_stop="50485"/>
            <exon e_start="50390" e_stop="50107"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.836" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52393" e_stop="52334" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="52333" i_stop="52218" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52217" e_stop="52145" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.959">
            <gDNA_intron_boundary i_start="52144" i_stop="51220" i_length="925"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51219" e_stop="50883" e_length="337"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="50882" i_stop="50652" i_length="231"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="50651" e_stop="50485" e_length="167"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.836">
            <gDNA_intron_boundary i_start="50484" i_stop="50391" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="0.989">
            <gDNA_exon_boundary e_start="50390" e_stop="50107" e_length="284"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52393" stop="52334"/>
              <exon start="52217" stop="52145"/>
              <exon start="51219" stop="50883"/>
              <exon start="50651" stop="50485"/>
              <exon start="50390" stop="50362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52388" stop="52334"/>
              <exon start="52217" stop="52145"/>
              <exon start="51219" stop="50883"/>
              <exon start="50651" stop="50485"/>
              <exon start="50390" stop="50309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52388" stop="52334"/>
              <exon start="52217" stop="52145"/>
              <exon start="51219" stop="50903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52386" stop="52334"/>
              <exon start="52217" stop="52145"/>
              <exon start="51219" stop="50916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52384" stop="52334"/>
              <exon start="52217" stop="52145"/>
              <exon start="51219" stop="50883"/>
              <exon start="50651" stop="50485"/>
              <exon start="50390" stop="50131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52383" stop="52334"/>
              <exon start="52217" stop="52145"/>
              <exon start="51219" stop="50883"/>
              <exon start="50651" stop="50485"/>
              <exon start="50390" stop="50187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52383" stop="52334"/>
              <exon start="52217" stop="52145"/>
              <exon start="51219" stop="50883"/>
              <exon start="50651" stop="50512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52383" stop="52334"/>
              <exon start="52217" stop="52145"/>
              <exon start="51219" stop="50927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52382" stop="52334"/>
              <exon start="52217" stop="52145"/>
              <exon start="51219" stop="50889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52381" stop="52334"/>
              <exon start="52217" stop="52145"/>
              <exon start="51219" stop="50883"/>
              <exon start="50651" stop="50485"/>
              <exon start="50390" stop="50307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52381" stop="52334"/>
              <exon start="52217" stop="52145"/>
              <exon start="51219" stop="50883"/>
              <exon start="50651" stop="50485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52381" stop="52334"/>
              <exon start="52217" stop="52145"/>
              <exon start="51219" stop="50883"/>
              <exon start="50651" stop="50537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52381" stop="52334"/>
              <exon start="52217" stop="52145"/>
              <exon start="51219" stop="50904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52380" stop="52334"/>
              <exon start="52217" stop="52145"/>
              <exon start="51219" stop="50883"/>
              <exon start="50651" stop="50513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52377" stop="52334"/>
              <exon start="52217" stop="52145"/>
              <exon start="51219" stop="50883"/>
              <exon start="50651" stop="50485"/>
              <exon start="50390" stop="50307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52376" stop="52334"/>
              <exon start="52217" stop="52145"/>
              <exon start="51219" stop="50883"/>
              <exon start="50651" stop="50485"/>
              <exon start="50390" stop="50354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52376" stop="52334"/>
              <exon start="52217" stop="52145"/>
              <exon start="51219" stop="50883"/>
              <exon start="50651" stop="50509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52375" stop="52334"/>
              <exon start="52217" stop="52145"/>
              <exon start="51219" stop="50944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52374" stop="52334"/>
              <exon start="52217" stop="52145"/>
              <exon start="51219" stop="50916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52374" stop="52334"/>
              <exon start="52217" stop="52145"/>
              <exon start="51219" stop="51003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52369" stop="52334"/>
              <exon start="52217" stop="52145"/>
              <exon start="51219" stop="50883"/>
              <exon start="50651" stop="50485"/>
              <exon start="50390" stop="50383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52368" stop="52334"/>
              <exon start="52217" stop="52145"/>
              <exon start="51219" stop="50916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52356" stop="52334"/>
              <exon start="52217" stop="52145"/>
              <exon start="51219" stop="50915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52352" stop="52334"/>
              <exon start="52217" stop="52145"/>
              <exon start="51219" stop="50883"/>
              <exon start="50651" stop="50485"/>
              <exon start="50390" stop="50346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52352" stop="52334"/>
              <exon start="52217" stop="52145"/>
              <exon start="51219" stop="50883"/>
              <exon start="50651" stop="50638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52351" stop="52334"/>
              <exon start="52217" stop="52145"/>
              <exon start="51219" stop="50928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51200" stop="50893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51192" stop="50883"/>
              <exon start="50651" stop="50485"/>
              <exon start="50390" stop="50107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622021" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51140" stop="50883"/>
              <exon start="50651" stop="50485"/>
              <exon start="50390" stop="50112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484165" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51095" stop="50883"/>
              <exon start="50651" stop="50485"/>
              <exon start="50390" stop="50220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50922" stop="50883"/>
              <exon start="50651" stop="50485"/>
              <exon start="50390" stop="50125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484039" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50613" stop="50485"/>
              <exon start="50390" stop="50318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309112" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50573" stop="50485"/>
              <exon start="50390" stop="50107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622031" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50380" stop="50112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280113" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCGTCGTCCGTCTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGG : GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAA : GTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAG : GAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGG : TTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCAATTTTTAAATTATCAGAACAAATTAGATTTTGGTTTTTCTTCCCTATTCAACAGTCTCACTTCATTTAAAGGGAATGATAAACTTCTTGTATCAGAGTTAGATTCAAGTTTGTTTTGCATATGCTTAACTGAGAATTTTGAGAACCACCTACTTTATGAAAAAAAAGAATTTTGAGAACAGCCTT</gDNA_template>
            <first_frame> A  V  V  R  L  *  E  N  R  N  P  K  D  L  R  H  R  R  Q  W  :  V  S  L  V  I  L  C  T  R  D  V  P  L  E  E  S  R  R  L  G  G  R  R  E   : S  M  S  L  A  D  S  P  Q  T  Q  S  W  C  Q  M  L  R  L  L  E  G  *  E  S  E  E  V  M  *  S  G  V  L  *  G  W  I  L  G  I  S  L  G  V  A  R  L  L  Q  G  R  L  V  C  W  M  W  C  I  T  P  L  T  M  S  W  L  G  H  K  P  W  *  R  V  Q  L  F  R  L  T  Q  L  H  L  S  S  G  I  S  S  T  M  E  L  K  S  V  A  R  R  R  L  L  L  L  P  K  R  K  E  R :   R  L  R  L  *  Q  R  R  K  R  V  T  M  S  K  E  S  W  K  R  G  N  R  I  A  R  L  T  H  M  S  R  S  N  L  L  V  G  V  Y  W  L  Q  S  H  R  D  L  A  S  V  V  V  L  M   : V  T  Y  W  K  E  R  N  L  N  F  T  *  R  N  F  R  R  R  K  G  R  V  P  V  L  L  L  R  V  A  G  S  N  F  *  I  I  R  T  N  *  I  L  V  F  L  P  Y  S  T  V  S  L  H  L  K  G  M  I  N  F  L  Y  Q  S  *  I  Q  V  C  F  A  Y  A  *  L  R  I  L  R  T  T  Y  F  M  K  K  K  N  F  E  N  S  L </first_frame>
            <second_frame>  P  S  S  V  F  E  K  I  E  T  L  R  T  S  V  T  G  D  N  G :   Y  L  S  *  F  Y  A  Q  E  T  C  H  W  R  K  A  E  D  L  E  E  E  E  K  :  V  *  A  W  Q  T  A  R  K  H  K  A  G  A  K  C  *  D  C  *  K  D  K  S  P  R  R  *  C  E  V  A  C  F  E  V  G  Y  W  E  F  L  L  G  *  R  G  C  Y  K  E  D  S  S  V  G  C  G  V  *  R  L  *  Q  *  V  G  *  D  T  N  P  G  E  E  C  N  Y  S  G  *  R  S  S  I  *  A  V  V  S  P  A  L  W  S  *  N  R  S  Q  E  E  D  C  C  F  F  Q  K  G  R  R   : G  G  *  G  C  S  R  G  E  K  E  *  P  C  P  K  K  A  G  K  E  A  T  G  S  Q  D  *  P  T  C  R  G  A  I  C  *  W  A  S  I  G  C  N  L  I  A  T  W  P  V  W  S  C  *  W  :  L  H  I  G  R  K  G  T  *  I  L  H  E  E  T  S  E  E  E  R  E  G  C  R  C  C  C  L  E  L  Q  A  P  I  F  K  L  S  E  Q  I  R  F  W  F  F  F  P  I  Q  Q  S  H  F  I  *  R  E  *  *  T  S  C  I  R  V  R  F  K  F  V  L  H  M  L  N  *  E  F  *  E  P  P  T  L  *  K  K  R  I  L  R  T  A   </second_frame>
            <third_frame>   R  R  P  S  L  R  K  S  K  P  *  G  P  P  S  P  A  T  M   : G  I  S  R  D  S  M  H  K  R  R  A  T  G  G  K  Q  K  T  W  R  K  K  R  K :   Y  E  L  G  R  Q  P  A  N  T  K  L  V  P  N  A  K  T  V  R  R  I  R  V  R  G  G  N  V  K  W  R  A  L  R  L  D  T  G  N  F  S  W  G  S  E  A  V  T  R  K  T  R  L  L  D  V  V  Y  N  A  S  N  N  E  L  V  R  T  Q  T  L  V  K  S  A  I  I  Q  V  D  A  A  P  F  K  Q  W  Y  L  Q  H  Y  G  V  E  I  G  R  K  K  K  T  A  A  S  S  K  K  E  G  E  :  E  A  E  A  V  A  E  E  K  K  S  N  H  V  Q  R  K  L  E  K  R  Q  Q  D  R  K  I  D  P  H  V  E  E  Q  F  A  S  G  R  L  L  A  A  I  S  S  R  P  G  Q  C  G  R  A  D  G :   Y  I  L  E  G  K  E  L  E  F  Y  M  K  K  L  Q  K  K  K  G  K  G  A  G  A  A  A  *  S  C  R  L  Q  F  L  N  Y  Q  N  K  L  D  F  G  F  S  S  L  F  N  S  L  T  S  F  K  G  N  D  K  L  L  V  S  E  L  D  S  S  L  F  C  I  C  L  T  E  N  F  E  N  H  L  L  Y  E  K  K  E  F  *  E  Q  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52358" stop="52334"/>
                    <exon start="52217" stop="52145"/>
                    <exon start="51219" stop="50883"/>
                    <exon start="50651" stop="50485"/>
                    <exon start="50390" stop="50306"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GPPSPATMGISRDSMHKRRATGGKQKTWRKKRKYELGRQPANTKLVPNAKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIIQVDAAPFKQWYLQHYGVEIGRKKKTAASSKKEGEEAEAVAEEKKSNHVQRKLEKRQQDRKIDPHVEEQFASGRLLAAISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAGAAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="51223" e_stop="50883"/>
            <exon e_start="50651" e_stop="50485"/>
            <exon e_start="50390" e_stop="50107"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.962"/>
          <exon-intron don_prob="0.996" acc_prob="0.836" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="51223" e_stop="50883" e_length="341"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="50882" i_stop="50652" i_length="231"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50651" e_stop="50485" e_length="167"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.836">
            <gDNA_intron_boundary i_start="50484" i_stop="50391" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="50390" e_stop="50107" e_length="284"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51223" stop="50883"/>
              <exon start="50651" stop="50485"/>
              <exon start="50390" stop="50147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51200" stop="50893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51192" stop="50883"/>
              <exon start="50651" stop="50485"/>
              <exon start="50390" stop="50107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622021" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51140" stop="50883"/>
              <exon start="50651" stop="50485"/>
              <exon start="50390" stop="50112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484165" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51095" stop="50883"/>
              <exon start="50651" stop="50485"/>
              <exon start="50390" stop="50220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50922" stop="50883"/>
              <exon start="50651" stop="50485"/>
              <exon start="50390" stop="50125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484039" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50613" stop="50485"/>
              <exon start="50390" stop="50318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309112" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50573" stop="50485"/>
              <exon start="50390" stop="50107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622031" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50380" stop="50112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280113" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAG : GAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGG : TTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCAATTTTTAAATTATCAGAACAAATTAGATTTTGGTTTTTCTTCCCTATTCAACAGTCTCACTTCATTTAAAGGGAATGATAAACTTCTTGTATCAGAGTTAGATTCAAGTTTGTTTTGCATATGCTTAACTGAGAATTTTGAGAACCACCTACTTTATGAAAAAAAAGAATTTTGAGAACAGCCTT</gDNA_template>
            <first_frame> E  G  M  S  L  A  D  S  P  Q  T  Q  S  W  C  Q  M  L  R  L  L  E  G  *  E  S  E  E  V  M  *  S  G  V  L  *  G  W  I  L  G  I  S  L  G  V  A  R  L  L  Q  G  R  L  V  C  W  M  W  C  I  T  P  L  T  M  S  W  L  G  H  K  P  W  *  R  V  Q  L  F  R  L  T  Q  L  H  L  S  S  G  I  S  S  T  M  E  L  K  S  V  A  R  R  R  L  L  L  L  P  K  R  K  E  R :   R  L  R  L  *  Q  R  R  K  R  V  T  M  S  K  E  S  W  K  R  G  N  R  I  A  R  L  T  H  M  S  R  S  N  L  L  V  G  V  Y  W  L  Q  S  H  R  D  L  A  S  V  V  V  L  M   : V  T  Y  W  K  E  R  N  L  N  F  T  *  R  N  F  R  R  R  K  G  R  V  P  V  L  L  L  R  V  A  G  S  N  F  *  I  I  R  T  N  *  I  L  V  F  L  P  Y  S  T  V  S  L  H  L  K  G  M  I  N  F  L  Y  Q  S  *  I  Q  V  C  F  A  Y  A  *  L  R  I  L  R  T  T  Y  F  M  K  K  K  N  F  E  N  S  L </first_frame>
            <second_frame>  K  V  *  A  W  Q  T  A  R  K  H  K  A  G  A  K  C  *  D  C  *  K  D  K  S  P  R  R  *  C  E  V  A  C  F  E  V  G  Y  W  E  F  L  L  G  *  R  G  C  Y  K  E  D  S  S  V  G  C  G  V  *  R  L  *  Q  *  V  G  *  D  T  N  P  G  E  E  C  N  Y  S  G  *  R  S  S  I  *  A  V  V  S  P  A  L  W  S  *  N  R  S  Q  E  E  D  C  C  F  F  Q  K  G  R  R   : G  G  *  G  C  S  R  G  E  K  E  *  P  C  P  K  K  A  G  K  E  A  T  G  S  Q  D  *  P  T  C  R  G  A  I  C  *  W  A  S  I  G  C  N  L  I  A  T  W  P  V  W  S  C  *  W  :  L  H  I  G  R  K  G  T  *  I  L  H  E  E  T  S  E  E  E  R  E  G  C  R  C  C  C  L  E  L  Q  A  P  I  F  K  L  S  E  Q  I  R  F  W  F  F  F  P  I  Q  Q  S  H  F  I  *  R  E  *  *  T  S  C  I  R  V  R  F  K  F  V  L  H  M  L  N  *  E  F  *  E  P  P  T  L  *  K  K  R  I  L  R  T  A   </second_frame>
            <third_frame>   R  Y  E  L  G  R  Q  P  A  N  T  K  L  V  P  N  A  K  T  V  R  R  I  R  V  R  G  G  N  V  K  W  R  A  L  R  L  D  T  G  N  F  S  W  G  S  E  A  V  T  R  K  T  R  L  L  D  V  V  Y  N  A  S  N  N  E  L  V  R  T  Q  T  L  V  K  S  A  I  I  Q  V  D  A  A  P  F  K  Q  W  Y  L  Q  H  Y  G  V  E  I  G  R  K  K  K  T  A  A  S  S  K  K  E  G  E  :  E  A  E  A  V  A  E  E  K  K  S  N  H  V  Q  R  K  L  E  K  R  Q  Q  D  R  K  I  D  P  H  V  E  E  Q  F  A  S  G  R  L  L  A  A  I  S  S  R  P  G  Q  C  G  R  A  D  G :   Y  I  L  E  G  K  E  L  E  F  Y  M  K  K  L  Q  K  K  K  G  K  G  A  G  A  A  A  *  S  C  R  L  Q  F  L  N  Y  Q  N  K  L  D  F  G  F  S  S  L  F  N  S  L  T  S  F  K  G  N  D  K  L  L  V  S  E  L  D  S  S  L  F  C  I  C  L  T  E  N  F  E  N  H  L  L  Y  E  K  K  E  F  *  E  Q  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51221" stop="50883"/>
                    <exon start="50651" stop="50485"/>
                    <exon start="50390" stop="50306"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RYELGRQPANTKLVPNAKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIIQVDAAPFKQWYLQHYGVEIGRKKKTAASSKKEGEEAEAVAEEKKSNHVQRKLEKRQQDRKIDPHVEEQFASGRLLAAISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAGAAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="53002" PGL_stop="56790"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53002" e_stop="53260"/>
            <exon e_start="55550" e_stop="55678"/>
            <exon e_start="56038" e_stop="56222"/>
            <exon e_start="56448" e_stop="56790"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.810" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.667" acc_prob="0.485" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53002" e_stop="53260" e_length="259"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.810">
            <gDNA_intron_boundary i_start="53261" i_stop="55549" i_length="2289"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55550" e_stop="55678" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.925">
            <gDNA_intron_boundary i_start="55679" i_stop="56037" i_length="359"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56038" e_stop="56222" e_length="185"/>
          </exon>
          <intron i_serial="3" don_prob="0.667" acc_prob="0.485">
            <gDNA_intron_boundary i_start="56223" i_stop="56447" i_length="225"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56448" e_stop="56790" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53002" stop="53260"/>
              <exon start="55550" stop="55678"/>
              <exon start="56038" stop="56222"/>
              <exon start="56448" stop="56739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53026" stop="53260"/>
              <exon start="55550" stop="55678"/>
              <exon start="56038" stop="56222"/>
              <exon start="56448" stop="56456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53053" stop="53260"/>
              <exon start="55550" stop="55678"/>
              <exon start="56038" stop="56222"/>
              <exon start="56448" stop="56790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53069" stop="53260"/>
              <exon start="55550" stop="55678"/>
              <exon start="56038" stop="56222"/>
              <exon start="56448" stop="56526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53069" stop="53260"/>
              <exon start="55550" stop="55678"/>
              <exon start="56038" stop="56222"/>
              <exon start="56448" stop="56454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53069" stop="53260"/>
              <exon start="55550" stop="55678"/>
              <exon start="56038" stop="56186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53069" stop="53260"/>
              <exon start="55550" stop="55678"/>
              <exon start="56038" stop="56096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236628" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATATTGTTTCCAAGTTGAGAGCTTTGTTCCCTCTATTGAAAAAAATGGGGTTTGCTGCAGATAGTACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACAAGTCCTAATGAG : GTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGTGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTAGGGAACAAG : ATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAGGCTTAATGGATGCTGCCACACAAGGTGCTCTACAAGCAGGGAAGCCCGTTGGCGGGTTCAAGATAGGTAAAGAAGCAGGGGAATGGACAGCTACAAATTTTCATCCATACTTACCATCAGAGAGTTATCTTACATGCAG : GTTTTTCTCCGCAAGGAAACACGGGCTGGTGGATGCTGTTGTGAGATGTAGAAGCTCTGAAAGGACAGCTGTTATCGCGCTTCCTGGAGGAATTGGTACCCTCGACGAGGTTTTTGAGATCATGGCTTTGATTCAACTCGAACGAATTGGCTCTCAACTTCCTGTTCCTTTGCTTCTAATGAACTATGATTCATTTTATACCAATTTGTTGGAGTTCCTCAATGATTGTGAGAAGTGGGGAACTGTCTCTAAGGGTGAAGTTGAATCATTGTGGAAAATTTGTACCAATAACTCAGAAGCTTTGGATTATTTGGCTGAATTTTATGGTCTTTCTACTATACAA</gDNA_template>
            <first_frame> I  Y  C  F  Q  V  E  S  F  V  P  S  I  E  K  N  G  V  C  C  R  *  Y  H  F  N  G  *  Y  L  S  K  K  L  S  S  S  *  E  R  C  K  F  G  V  L  Y  E  K  G  N  M  G  F  *  S  L  L  A  K  A  Q  V  P  I  K  N  L  I  L  L  Q  E  *  I  N  *  F  *  R  K  N  K  S  *  *   : G  Q  E  R  D  R  A  M  L  *  I  N  T  Q  A  W  S  W  C  C  V  F  R  I  F  K  D  W  S  W  T  S  T  L  H  K  N  L  *  I  R  E  Q   : D  C  N  S  I  R  L  Y  D  M  V  R  G  W  A  R  L  N  G  C  C  H  T  R  C  S  T  S  R  E  A  R  W  R  V  Q  D  R  *  R  S  R  G  M  D  S  Y  K  F  S  S  I  L  T  I  R  E  L  S  Y  M  Q  :  V  F  L  R  K  E  T  R  A  G  G  C  C  C  E  M  *  K  L  *  K  D  S  C  Y  R  A  S  W  R  N  W  Y  P  R  R  G  F  *  D  H  G  F  D  S  T  R  T  N  W  L  S  T  S  C  S  F  A  S  N  E  L  *  F  I  L  Y  Q  F  V  G  V  P  Q  *  L  *  E  V  G  N  C  L  *  G  *  S  *  I  I  V  E  N  L  Y  Q  *  L  R  S  F  G  L  F  G  *  I  L  W  S  F  Y  Y  T  </first_frame>
            <second_frame>  Y  I  V  S  K  L  R  A  L  F  P  L  L  K  K  M  G  F  A  A  D  S  T  I  S  M  A  N  I  F  L  R  S  S  H  H  H  K  K  D  V  N  L  G  S  C  M  R  K  E  T  W  G  F  N  L  Y  L  P  K  L  K  Y  Q  S  R  I  S  F  C  C  K  N  E  S  I  D  F  E  E  R  T  S  P  N  E  :  V  K  K  E  I  E  Q  C  Y  E  L  I  H  R  L  G  R  G  V  V  Y  L  G  S  S  R  I  G  P  G  H  P  H  Y  I  K  T  F  E  L  G  N  K  :  I  A  T  L  L  D  C  T  T  W  S  G  A  G  P  G  L  M  D  A  A  T  Q  G  A  L  Q  A  G  K  P  V  G  G  F  K  I  G  K  E  A  G  E  W  T  A  T  N  F  H  P  Y  L  P  S  E  S  Y  L  T  C  R :   F  F  S  A  R  K  H  G  L  V  D  A  V  V  R  C  R  S  S  E  R  T  A  V  I  A  L  P  G  G  I  G  T  L  D  E  V  F  E  I  M  A  L  I  Q  L  E  R  I  G  S  Q  L  P  V  P  L  L  L  M  N  Y  D  S  F  Y  T  N  L  L  E  F  L  N  D  C  E  K  W  G  T  V  S  K  G  E  V  E  S  L  W  K  I  C  T  N  N  S  E  A  L  D  Y  L  A  E  F  Y  G  L  S  T  I  Q </second_frame>
            <third_frame>   I  L  F  P  S  *  E  L  C  S  L  Y  *  K  K  W  G  L  L  Q  I  V  P  F  Q  W  L  I  S  F  *  E  A  L  I  I  I  R  K  M  *  I  W  G  L  V  *  E  R  K  H  G  V  L  I  F  T  C  Q  S  S  S  T  N  Q  E  S  H  F  V  A  R  M  N  Q  L  I  L  K  K  E  Q  V  L  M  R :   S  R  K  R  *  S  N  A  M  N  *  Y  T  G  L  V  V  V  L  C  I  *  D  L  Q  G  L  V  L  D  I  H  T  T  *  K  P  L  N  *  G  T  R :   L  Q  L  Y  *  I  V  R  H  G  P  G  L  G  Q  A  *  W  M  L  P  H  K  V  L  Y  K  Q  G  S  P  L  A  G  S  R  *  V  K  K  Q  G  N  G  Q  L  Q  I  F  I  H  T  Y  H  Q  R  V  I  L  H  A   : G  F  S  P  Q  G  N  T  G  W  W  M  L  L  *  D  V  E  A  L  K  G  Q  L  L  S  R  F  L  E  E  L  V  P  S  T  R  F  L  R  S  W  L  *  F  N  S  N  E  L  A  L  N  F  L  F  L  C  F  *  *  T  M  I  H  F  I  P  I  C  W  S  S  S  M  I  V  R  S  G  E  L  S  L  R  V  K  L  N  H  C  G  K  F  V  P  I  T  Q  K  L  W  I  I  W  L  N  F  M  V  F  L  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53003" stop="53260"/>
                    <exon start="55550" stop="55678"/>
                    <exon start="56038" stop="56222"/>
                    <exon start="56448" stop="56790"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>915</number_coding_nucleotides>
                  <number_encoded_amino_acids>305</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YIVSKLRALFPLLKKMGFAADSTISMANIFLRSSHHHKKDVNLGSCMRKETWGFNLYLPKLKYQSRISFCCKNESIDFEERTSPNEVKKEIEQCYELIHRLGRGVVYLGSSRIGPGHPHYIKTFELGNKIATLLDCTTWSGAGPGLMDAATQGALQAGKPVGGFKIGKEAGEWTATNFHPYLPSESYLTCRFFSARKHGLVDAVVRCRSSERTAVIALPGGIGTLDEVFEIMALIQLERIGSQLPVPLLLMNYDSFYTNLLEFLNDCEKWGTVSKGEVESLWKICTNNSEALDYLAEFYGLSTIQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="66000" PGL_stop="62780"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66000" e_stop="65738"/>
            <exon e_start="64710" e_stop="64646"/>
            <exon e_start="64519" e_stop="64447"/>
            <exon e_start="64373" e_stop="64320"/>
            <exon e_start="63217" e_stop="62780"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.358" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.966" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66000" e_stop="65738" e_length="263"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.963">
            <gDNA_intron_boundary i_start="65737" i_stop="64711" i_length="1027"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64710" e_stop="64646" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64645" i_stop="64520" i_length="126"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64519" e_stop="64447" e_length="73"/>
          </exon>
          <intron i_serial="3" don_prob="0.358" acc_prob="0.967">
            <gDNA_intron_boundary i_start="64446" i_stop="64374" i_length="73"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64373" e_stop="64320" e_length="54"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.966">
            <gDNA_intron_boundary i_start="64319" i_stop="63218" i_length="1102"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="63217" e_stop="62780" e_length="438"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66000" stop="65738"/>
              <exon start="64710" stop="64646"/>
              <exon start="64519" stop="64447"/>
              <exon start="64373" stop="64320"/>
              <exon start="63217" stop="62940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65994" stop="65741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65991" stop="65738"/>
              <exon start="64710" stop="64646"/>
              <exon start="64519" stop="64447"/>
              <exon start="64373" stop="64320"/>
              <exon start="63217" stop="62906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65989" stop="65738"/>
              <exon start="64710" stop="64646"/>
              <exon start="64519" stop="64447"/>
              <exon start="64373" stop="64320"/>
              <exon start="63217" stop="62884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65989" stop="65738"/>
              <exon start="64710" stop="64646"/>
              <exon start="64519" stop="64447"/>
              <exon start="64373" stop="64320"/>
              <exon start="63217" stop="63098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65988" stop="65738"/>
              <exon start="64710" stop="64646"/>
              <exon start="64519" stop="64447"/>
              <exon start="64373" stop="64320"/>
              <exon start="63217" stop="63160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65987" stop="65738"/>
              <exon start="64710" stop="64646"/>
              <exon start="64519" stop="64447"/>
              <exon start="64373" stop="64320"/>
              <exon start="63217" stop="62859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65985" stop="65738"/>
              <exon start="64710" stop="64646"/>
              <exon start="64519" stop="64447"/>
              <exon start="64373" stop="64320"/>
              <exon start="63217" stop="63094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65966" stop="65738"/>
              <exon start="64710" stop="64646"/>
              <exon start="64519" stop="64447"/>
              <exon start="64373" stop="64320"/>
              <exon start="63217" stop="62903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65954" stop="65738"/>
              <exon start="64710" stop="64646"/>
              <exon start="64519" stop="64447"/>
              <exon start="64373" stop="64320"/>
              <exon start="63217" stop="63022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65954" stop="65738"/>
              <exon start="64710" stop="64646"/>
              <exon start="64519" stop="64447"/>
              <exon start="64373" stop="64320"/>
              <exon start="63217" stop="63064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65954" stop="65738"/>
              <exon start="64710" stop="64646"/>
              <exon start="64519" stop="64447"/>
              <exon start="64373" stop="64320"/>
              <exon start="63217" stop="63109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65953" stop="65738"/>
              <exon start="64710" stop="64646"/>
              <exon start="64519" stop="64447"/>
              <exon start="64373" stop="64320"/>
              <exon start="63217" stop="62883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64710" stop="64646"/>
              <exon start="64519" stop="64447"/>
              <exon start="64373" stop="64320"/>
              <exon start="63217" stop="62825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436186" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64708" stop="64646"/>
              <exon start="64519" stop="64447"/>
              <exon start="64373" stop="64320"/>
              <exon start="63217" stop="62831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64707" stop="64646"/>
              <exon start="64519" stop="64447"/>
              <exon start="64373" stop="64320"/>
              <exon start="63217" stop="62835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63130" stop="62780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63129" stop="62780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335521" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATATCTTAGAACTTTTAGATTGACAAAACTTAGGGTTTAGCATTTGGAAATTGAGAATGGCGACGCCGACGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGACAGAATCCTCAATTCACCTCTGATGCGTTAACCACTGCGATTCCGTCTACTCCAGTCGTATGCCTCCTTAGGTTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGATCCATTTTCGGATACG : GCTCAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAG : ACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATG : TTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAG : GTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAACAGTAGACAGCAATTTGGTGTGCTTGCTCCTTTATCTCTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTGCCAGTCCCTTAAAAATCGTCGACATGGCTCCCGTTAGATAGTGAAGAAATGCAAAAAAATGTCGTTTTCAACCATTTGGCACTATTATCAAGTTTTGTAAATTGTAATCGACTTACCTTTATCCTGCTTTAAGAGTGATAATTCTTGCTGTGTCTCTTTTATTAATACAAAACAATTTTGCAAGGGACTATAATTTTCTCCTTGAAGGTTCATATCCATTTTCATGGTGAATTGTTTCTTAG</gDNA_template>
            <first_frame> K  Y  L  R  T  F  R  L  T  K  L  R  V  *  H  L  E  I  E  N  G  D  A  D  D  L  T  E  L  *  I  R  F  R  R  *  N  K  S  G  G  E  P  V  T  R  T  E  S  S  I  H  L  *  C  V  N  H  C  D  S  V  Y  S  S  R  M  P  P  *  V  R  R  *  L  C  C  W  S  L  H  G  I  H  F  R  I  R :   L  R  I  N  K  E  E  R  F  *  R  I  L  W  G  S  R  S  F  G  K   : D  F  C  S  F  I  R  S  S  *  F  S  C  L  F  L  E  E  N  T  G  K  R  *  C :   Y  Q  C  W  S  S  W  M  L  H  W  S  C  P  K  F  S  R :   C  T  S  G  S  T  T  E  L  S  H  L  W  G  I  F  F  H  H  R  R  S  *  Q  A  A  T  C  I  S  S  Y  I  S  H  E  C  Q  Q  *  T  A  I  W  C  A  C  S  F  I  S  T  S  T  K  *  A  Q  G  I  L  F  I  L  L  P  V  P  *  K  S  S  T  W  L  P  L  D  S  E  E  M  Q  K  N  V  V  F  N  H  L  A  L  L  S  S  F  V  N  C  N  R  L  T  F  I  L  L  *  E  *  *  F  L  L  C  L  F  Y  *  Y  K  T  I  L  Q  G  T  I  I  F  S  L  K  V  H  I  H  F  H  G  E  L  F  L   </first_frame>
            <second_frame>  N  I  L  E  L  L  D  *  Q  N  L  G  F  S  I  W  K  L  R  M  A  T  P  T  T  S  P  N  S  E  S  D  S  D  V  E  T  S  P  V  A  N  P  S  P  G  Q  N  P  Q  F  T  S  D  A  L  T  T  A  I  P  S  T  P  V  V  C  L  L  R  F  A  G  D  S  A  A  G  A  F  M  G  S  I  F  G  Y   : G  S  G  L  I  K  K  K  G  F  K  G  S  F  G  E  A  G  A  S  A  K  :  T  F  A  V  L  S  G  V  H  S  L  V  V  C  F  L  K  R  I  R  G  K  D  D   : V  I  N  A  G  V  A  G  C  C  T  G  L  A  L  S  F  P   : G  A  P  Q  A  L  L  Q  S  C  L  T  F  G  A  F  S  F  I  I  E  G  L  N  K  Q  Q  P  A  L  A  L  T  S  H  M  N  V  N  S  R  Q  Q  F  G  V  L  A  P  L  S  L  P  L  P  N  E  L  K  E  S  F  S  F  F  C  Q  S  L  K  N  R  R  H  G  S  R  *  I  V  K  K  C  K  K  M  S  F  S  T  I  W  H  Y  Y  Q  V  L  *  I  V  I  D  L  P  L  S  C  F  K  S  D  N  S  C  C  V  S  F  I  N  T  K  Q  F  C  K  G  L  *  F  S  P  *  R  F  I  S  I  F  M  V  N  C  F  L  </second_frame>
            <third_frame>   I  S  *  N  F  *  I  D  K  T  *  G  L  A  F  G  N  *  E  W  R  R  R  R  P  H  R  T  L  N  P  I  P  T  L  K  Q  V  R  W  R  T  R  H  P  D  R  I  L  N  S  P  L  M  R  *  P  L  R  F  R  L  L  Q  S  Y  A  S  L  G  S  P  V  T  L  L  L  E  P  S  W  D  P  F  S  D  T  :  A  Q  D  *  *  R  R  K  V  L  K  D  P  L  G  K  Q  E  L  R  Q  R :   L  L  Q  F  Y  Q  E  F  I  V  *  L  S  V  S  *  R  E  Y  G  E  K  M  M  :  L  S  M  L  E  *  L  D  V  A  L  V  L  P  *  V  F  Q  :  V  H  L  R  L  Y  Y  R  V  V  S  P  L  G  H  F  L  S  S  S  K  V  L  T  S  S  N  L  H  *  L  L  H  L  T  *  M  S  T  V  D  S  N  L  V  C  L  L  L  Y  L  Y  L  Y  Q  M  S  S  R  N  P  F  H  S  S  A  S  P  L  K  I  V  D  M  A  P  V  R  *  *  R  N  A  K  K  C  R  F  Q  P  F  G  T  I  I  K  F  C  K  L  *  S  T  Y  L  Y  P  A  L  R  V  I  I  L  A  V  S  L  L  L  I  Q  N  N  F  A  R  D  Y  N  F  L  L  E  G  S  Y  P  F  S  W  *  I  V  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65975" stop="65738"/>
                    <exon start="64710" stop="64646"/>
                    <exon start="64519" stop="64447"/>
                    <exon start="64373" stop="64320"/>
                    <exon start="63217" stop="62985"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNLGFSIWKLRMATPTTSPNSESDSDVETSPVANPSPGQNPQFTSDALTTAIPSTPVVCLLRFAGDSAAGAFMGSIFGYGSGLIKKKGFKGSFGEAGASAKTFAVLSGVHSLVVCFLKRIRGKDDVINAGVAGCCTGLALSFPGAPQALLQSCLTFGAFSFIIEGLNKQQPALALTSHMNVNSRQQFGVLAPLSLPLPNELKESFSFFCQSLKNRRHGSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="72796" PGL_stop="66562"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72796" e_stop="72466"/>
            <exon e_start="72226" e_stop="72092"/>
            <exon e_start="71616" e_stop="71533"/>
            <exon e_start="71449" e_stop="71324"/>
            <exon e_start="71240" e_stop="71181"/>
            <exon e_start="71097" e_stop="71044"/>
            <exon e_start="70947" e_stop="70855"/>
            <exon e_start="70723" e_stop="70628"/>
            <exon e_start="70446" e_stop="70298"/>
            <exon e_start="69957" e_stop="69808"/>
            <exon e_start="69586" e_stop="69457"/>
            <exon e_start="69365" e_stop="68451"/>
            <exon e_start="68357" e_stop="68259"/>
            <exon e_start="68170" e_stop="68036"/>
            <exon e_start="67946" e_stop="67158"/>
            <exon e_start="67072" e_stop="66562"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="1.000" e_score="0.993"/>
          <exon-intron don_prob="0.984" acc_prob="0.998" e_score="0.985"/>
          <exon-intron don_prob="1.000" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.869" acc_prob="0.682" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.859" acc_prob="0.792" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.999" e_score="0.992"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="72796" e_stop="72466" e_length="331"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72465" i_stop="72227" i_length="239"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="72226" e_stop="72092" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.998">
            <gDNA_intron_boundary i_start="72091" i_stop="71617" i_length="475"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71616" e_stop="71533" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.823">
            <gDNA_intron_boundary i_start="71532" i_stop="71450" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71449" e_stop="71324" e_length="126"/>
          </exon>
          <intron i_serial="4" don_prob="0.869" acc_prob="0.682">
            <gDNA_intron_boundary i_start="71323" i_stop="71241" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71240" e_stop="71181" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="71180" i_stop="71098" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71097" e_stop="71044" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="71043" i_stop="70948" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="70947" e_stop="70855" e_length="93"/>
          </exon>
          <intron i_serial="7" don_prob="0.984" acc_prob="0.998">
            <gDNA_intron_boundary i_start="70854" i_stop="70724" i_length="131"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="70723" e_stop="70628" e_length="96"/>
          </exon>
          <intron i_serial="8" don_prob="0.859" acc_prob="0.792">
            <gDNA_intron_boundary i_start="70627" i_stop="70447" i_length="181"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="70446" e_stop="70298" e_length="149"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70297" i_stop="69958" i_length="340"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="69957" e_stop="69808" e_length="150"/>
          </exon>
          <intron i_serial="10" don_prob="0.987" acc_prob="0.985">
            <gDNA_intron_boundary i_start="69807" i_stop="69587" i_length="221"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="69586" e_stop="69457" e_length="130"/>
          </exon>
          <intron i_serial="11" don_prob="0.974" acc_prob="0.999">
            <gDNA_intron_boundary i_start="69456" i_stop="69366" i_length="91"/>
          </intron>
          <exon e_serial="12" e_score="0.992">
            <gDNA_exon_boundary e_start="69365" e_stop="68451" e_length="915"/>
          </exon>
          <intron i_serial="12" don_prob="0.911" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68450" i_stop="68358" i_length="93"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="68357" e_stop="68259" e_length="99"/>
          </exon>
          <intron i_serial="13" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="68258" i_stop="68171" i_length="88"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="68170" e_stop="68036" e_length="135"/>
          </exon>
          <intron i_serial="14" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="68035" i_stop="67947" i_length="89"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="67946" e_stop="67158" e_length="789"/>
          </exon>
          <intron i_serial="15" don_prob="0.895" acc_prob="1.000">
            <gDNA_intron_boundary i_start="67157" i_stop="67073" i_length="85"/>
          </intron>
          <exon e_serial="16" e_score="0.986">
            <gDNA_exon_boundary e_start="67072" e_stop="66562" e_length="511"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72796" stop="72477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72771" stop="72466"/>
              <exon start="72226" stop="72092"/>
              <exon start="71616" stop="71533"/>
              <exon start="71449" stop="71324"/>
              <exon start="71240" stop="71181"/>
              <exon start="71097" stop="71044"/>
              <exon start="70947" stop="70855"/>
              <exon start="70723" stop="70628"/>
              <exon start="70446" stop="70298"/>
              <exon start="69957" stop="69808"/>
              <exon start="69586" stop="69457"/>
              <exon start="69365" stop="68451"/>
              <exon start="68357" stop="68259"/>
              <exon start="68170" stop="68036"/>
              <exon start="67946" stop="67158"/>
              <exon start="67072" stop="66562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71565" stop="71533"/>
              <exon start="71449" stop="71324"/>
              <exon start="71240" stop="71181"/>
              <exon start="71097" stop="71044"/>
              <exon start="70947" stop="70855"/>
              <exon start="70723" stop="70628"/>
              <exon start="70446" stop="70355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71565" stop="71533"/>
              <exon start="71449" stop="71324"/>
              <exon start="71240" stop="71181"/>
              <exon start="71097" stop="71044"/>
              <exon start="70947" stop="70855"/>
              <exon start="70723" stop="70628"/>
              <exon start="70446" stop="70355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68754" stop="68451"/>
              <exon start="68357" stop="68259"/>
              <exon start="68170" stop="68036"/>
              <exon start="67946" stop="67829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68754" stop="68472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473597" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCGCCGGAAAAATAAACGCTCTTTCTTAGTTCAGAAATGTCAGAAAACAGATTCTTAGGCAACATTTCTGCGTCTTCGTTCCGAAATCTACTTCCAAAATCAGTTTCAACTAAGAAAAAGTTGAGTTCAAGTAGATTTAAGCATAAAATGAACAGTGAAAATGTTGCTCCTATAGATCCCAACGTTCAGATCAGTGATCCACCGTTGTTACCTACGAGTTCGATACTTAAAAAAACCGTCTTGAAGACGATTGATAGTGATGTATCGACAGAACTCACCAGATCTGTTGCACAGGAACAAACATCAGAAGCTCCTGATCCACCAGTTAAG : GTTGTTGCAAGGATTAAACCTGCTAATGGTATTGAGAGTGGAACCCAAGCGGTTCGCAAAGCTTCTGATACCTCAGTGTGTGTTGCTGATAGAAAGTTTAACTTTGACATGGTTTTTGGTTCAAATTCGAATCAG : GAAGATGTATTTCAATCGGTTGGTGCCCCTTTAGTTAAGGATGCATTGGCAGGTTACAACACTTCTCTCTTAGCTTATGGACAG : ACTGGAAGTGGCAAGACTTATACAATGTGGGGACCTCCTAGTTCCATTGTTGAAGTTCCATCACCTAATGGTCTTCAAGGCATTGTGCCGCGCATTTTTCAGACATTGTTTTCTAGTATACAAAAA : GAGCAAGAGAACTCTGAAGGTAAACAGATAAATTACCAGTGTCGTTGCTCGTTCCTAGAG : ATATATGATGAACACATTGGGGATCTACTTGATCCTACACAGAGAAACTTAAAG : ATAATGGATGATCCAAGAGTTGGATTCTATGTTGAGAACATAACTGAGGAATATGTGTCTACCTACGAGGATGTATCACAAATGTTGATTAAG : GGTCTTTCAAGTAGAAAAGTTGGATCAACGAGCATCAATTCGAAGAGTTCTAGGTCCCATATTGTTTTTACCTGCGTCATTGAGTCCTGGTGCAAG : GAGTCCTCATCAACGTGTTTTGGTAGCTCAAAGATGAGCAGAATGAGCCTTGTTGATCTTGCTGGATTTGACAAAAATATACCTGATGATGCCGGTAAACAGCTTGTTAAGGAAGGGAAGTATGTAAAGAAGTCCACATCACTGCTCGG : GCATTTGGTTAATGTCCTCTCTGAAAGGAGTCAGTCCAGGAAACTTGAGGATGTTTCGTACAGCAGTTCCACTTTGACTCATTTAATGAGAGAATCACTTGGTGGGAATGCTAAACTCTCCGTCATATGTGCTATCAGCCCAGAAAACAA : GCATAATAGTGAAACAGTAAGCACTCTGAGATTTGGGAAACGGGTTAAACTCACACCAAATGAGCCATTGGTAAATGAAATAACAGAAGACGATGTTAATGGCCTGAGTGATCAGATTCGCCAATTGAAG : GAAGAGCTTATAAGAGCTCGGTCAAGTGCAAGCATTTCAGTCGGAAGCAACTATGGATCCTTCAGAGGACCAAATGTACGTGAAAGTTTGAATCAGTTGAGAGTGAGCCTTAACCGTTCACTCATCTTACCTGACATAGATAATGAGCGTGAAGAAGAAGAGGTTCACATAAATGAGGATGATATAAAAGAACTACAGCTCCAGATCAATAACTTACGTGGTTCACGTGGAAATAACTCAAACTCTCTCAAGTATTCATCTGGAGAAAGTGAACACTATCTCAGCTGTTCAGAAGAAAGTGAAGGTGAAGAAATTAACTCAGATGAGATACTGGAGGAGACCCTTGATGATGCTGACCAAGAGATGGAAACGATGCAGCCTGAATACTGTAGCAGCATCTCAATAGGCCCATCCCGCCATTCTGCTGATCTTCCTGGCCCGGTGTTATCTGAGTCCCCAAAGTTTCGGAACATGCAGAGGAAGAGCTTAATTATCTCCGGTGAAGATAATATTCAAAGTTCCTCCAAAAGTTCTGAATTGCCTTCCCTGCCACAGAAACAAGACCTTGTCCAGTCTTCTTTGAGGTCCAGCAGAATATTTCCTGGGCCAACTGAATCCTTGGCTGCCAGTCTACATAGAGGACTAGAGATCATTGATTATCACCAAAGGAATTCCGCATCAAATAAATCTTTGGTTTCCTTCTCTTTTGAACATTTGGCAGTGAACCCAAGCCCAATGTCAAATGGTAAGGCCAATGCTTCTATTCAAACATCATCGGAAGAGGGACAATCTTCTCCTTTTGTAGCCGCTACATTCCTGTGTCCAAAGTGCAAGACGAAAGCAACATCCTCTAGTGTTGTTAAGGATAGCACTGGGACATGGATGGTTTCCATGGAAGGGACAAGTACGGATCAA : GATTCGGAGAAAGTTTTGTTCCAAGCTCTAGAGAGAGAGAAGCAGCTTGAAAGTGTATGCAAGGATCAAGCAGACAAAATTGAGCAGCTAAACCAACGA : CTAGCCCGCTGTAAGTGCACACAAGAACAGAGTTCTTTAGTTGATTGTGGCAAGGATGTCGTTGATCTCCACGACAATGAGAATCAAGCTTCAATAATCTATCAGAATGGGAGTCAATCACCCAACATCCCAAAG : CTCCTGAAATGGGACGATGAAAGTCCTGAGCCTGAAGCTGCAGGAGAGAAGTATGAAACTAAAGAAATTCAGGGCAATGTCGAAAACAGTGGCGGGAAAAAAATGTTTGATATGGCTGAGAGAGAAGCACTACTTAAAGAAATTGGAGGCCTAAGGGCCCAATTGAAGTCAGATGGAGCCTCCACAAACAAATCACTTGAAAGAACCAGATCCTCTTTGTTAGCACAATCAATGCAGCTGAGAAAAAGTGGTGTATATGCTACTACGGGTTCTGGTGAAGAACTTGAGAAGGAAAGAGAAAGATGGACTGAGATGGAAAGTGAGTGGATTTGTCTAACTGATGAGCTTAGAATTGATCTTGAGGCTTATCGCCAGCGTGCAGAAAAGGTGGCAATGGAATTAATGTTGGAGAAGAAATGCACGGATGAGTTGGATGATGCCCTCAAAAGATCCGTCTTTGGGCAAGCCAGAATAATTGAGCATTACGCGGAATTACAGGAGAAGTACAACGACTTAGCTGAGAAGCATAAGTTGATCTTGCAAGGGATACAAGATGTGAAAAATGCTGCAGCAAAAGCAGGAAAGAAAGGCCATGGTGCTCGTTTCGCCAAGTCTCTCGCTGCAGAGCTGTCAGCTTTGAGAGTGGAAAGGGAAAGAGAGAGGGAAATGCTGAAAAAGGAGAATAAAAGCTTGAGAGTTCAACTTAAAGACACTGCTGAAGCTGTTCATGCAGCCGGAGAACTTCTTGTTAGATTGAGAGAAGCGGAGGAAACAGCTTCACTTGCTGAG : GAGAACTTTACACAATCAAAGGAAGAGAATGAGAGATTGAAGAAGCAAATAGAGAAGCTGAAGAGAAAACATAAGATGGAGATGATAACAATGAAACAGTATCTTGCTGAAAGCCGATTGCCAGAAGCAGCGTTGAGACCGCCTATTTACAGGCAAGACTCTGATGTAGCAAACAATGACAACAACAACACCATCCAACATTCTGAGTATGATGATGATCAATCATGGAGAGCAGAATTTGGCGCTATTTATCAAGAACACATATGAGCCATGTTTGATTGAACTATGGAAACACGTGAAGACCCTGCTCGGGACTTTGCTGAAAAAAACCTGCTCATCTTGATCACACCTTAGTGTTATTCAGGGATGAATTGGCTGTATTCTTATTGATTTTATCATTCTTTTGAAACTTGATTGACCAGATTTGACATTTGTTGTGAGCTGTTTCTTCAGCTTGTTAATAATAATGCTTATGTATCCTAAAAAGTCATTCAACTTTATGCACAAGTAT</gDNA_template>
            <first_frame> S  A  G  K  I  N  A  L  S  *  F  R  N  V  R  K  Q  I  L  R  Q  H  F  C  V  F  V  P  K  S  T  S  K  I  S  F  N  *  E  K  V  E  F  K  *  I  *  A  *  N  E  Q  *  K  C  C  S  Y  R  S  Q  R  S  D  Q  *  S  T  V  V  T  Y  E  F  D  T  *  K  N  R  L  E  D  D  *  *  *  C  I  D  R  T  H  Q  I  C  C  T  G  T  N  I  R  S  S  *  S  T  S  *   : G  C  C  K  D  *  T  C  *  W  Y  *  E  W  N  P  S  G  S  Q  S  F  *  Y  L  S  V  C  C  *  *  K  V  *  L  *  H  G  F  W  F  K  F  E  S   : G  R  C  I  S  I  G  W  C  P  F  S  *  G  C  I  G  R  L  Q  H  F  S  L  S  L  W  T   : D  W  K  W  Q  D  L  Y  N  V  G  T  S  *  F  H  C  *  S  S  I  T  *  W  S  S  R  H  C  A  A  H  F  S  D  I  V  F  *  Y  T  K   : R  A  R  E  L  *  R  *  T  D  K  L  P  V  S  L  L  V  P  R   : D  I  *  *  T  H  W  G  S  T  *  S  Y  T  E  K  L  K   : D  N  G  *  S  K  S  W  I  L  C  *  E  H  N  *  G  I  C  V  Y  L  R  G  C  I  T  N  V  D  *   : G  S  F  K  *  K  S  W  I  N  E  H  Q  F  E  E  F  *  V  P  Y  C  F  Y  L  R  H  *  V  L  V  Q   : G  V  L  I  N  V  F  W  *  L  K  D  E  Q  N  E  P  C  *  S  C  W  I  *  Q  K  Y  T  *  *  C  R  *  T  A  C  *  G  R  E  V  C  K  E  V  H  I  T  A  R  :  A  F  G  *  C  P  L  *  K  E  S  V  Q  E  T  *  G  C  F  V  Q  Q  F  H  F  D  S  F  N  E  R  I  T  W  W  E  C  *  T  L  R  H  M  C  Y  Q  P  R  K  Q  :  A  *  *  *  N  S  K  H  S  E  I  W  E  T  G  *  T  H  T  K  *  A  I  G  K  *  N  N  R  R  R  C  *  W  P  E  *  S  D  S  P  I  E   : G  R  A  Y  K  S  S  V  K  C  K  H  F  S  R  K  Q  L  W  I  L  Q  R  T  K  C  T  *  K  F  E  S  V  E  S  E  P  *  P  F  T  H  L  T  *  H  R  *  *  A  *  R  R  R  G  S  H  K  *  G  *  Y  K  R  T  T  A  P  D  Q  *  L  T  W  F  T  W  K  *  L  K  L  S  Q  V  F  I  W  R  K  *  T  L  S  Q  L  F  R  R  K  *  R  *  R  N  *  L  R  *  D  T  G  G  D  P  *  *  C  *  P  R  D  G  N  D  A  A  *  I  L  *  Q  H  L  N  R  P  I  P  P  F  C  *  S  S  W  P  G  V  I  *  V  P  K  V  S  E  H  A  E  E  E  L  N  Y  L  R  *  R  *  Y  S  K  F  L  Q  K  F  *  I  A  F  P  A  T  E  T  R  P  C  P  V  F  F  E  V  Q  Q  N  I  S  W  A  N  *  I  L  G  C  Q  S  T  *  R  T  R  D  H  *  L  S  P  K  E  F  R  I  K  *  I  F  G  F  L  L  F  *  T  F  G  S  E  P  K  P  N  V  K  W  *  G  Q  C  F  Y  S  N  I  I  G  R  G  T  I  F  S  F  C  S  R  Y  I  P  V  S  K  V  Q  D  E  S  N  I  L  *  C  C  *  G  *  H  W  D  M  D  G  F  H  G  R  D  K  Y  G  S   : R  F  G  E  S  F  V  P  S  S  R  E  R  E  A  A  *  K  C  M  Q  G  S  S  R  Q  N  *  A  A  K  P  T   : T  S  P  L  *  V  H  T  R  T  E  F  F  S  *  L  W  Q  G  C  R  *  S  P  R  Q  *  E  S  S  F  N  N  L  S  E  W  E  S  I  T  Q  H  P  K   : A  P  E  M  G  R  *  K  S  *  A  *  S  C  R  R  E  V  *  N  *  R  N  S  G  Q  C  R  K  Q  W  R  E  K  N  V  *  Y  G  *  E  R  S  T  T  *  R  N  W  R  P  K  G  P  I  E  V  R  W  S  L  H  K  Q  I  T  *  K  N  Q  I  L  F  V  S  T  I  N  A  A  E  K  K  W  C  I  C  Y  Y  G  F  W  *  R  T  *  E  G  K  R  K  M  D  *  D  G  K  *  V  D  L  S  N  *  *  A  *  N  *  S  *  G  L  S  P  A  C  R  K  G  G  N  G  I  N  V  G  E  E  M  H  G  *  V  G  *  C  P  Q  K  I  R  L  W  A  S  Q  N  N  *  A  L  R  G  I  T  G  E  V  Q  R  L  S  *  E  A  *  V  D  L  A  R  D  T  R  C  E  K  C  C  S  K  S  R  K  E  R  P  W  C  S  F  R  Q  V  S  R  C  R  A  V  S  F  E  S  G  K  G  K  R  E  G  N  A  E  K  G  E  *  K  L  E  S  S  T  *  R  H  C  *  S  C  S  C  S  R  R  T  S  C  *  I  E  R  S  G  G  N  S  F  T  C  *   : G  E  L  Y  T  I  K  G  R  E  *  E  I  E  E  A  N  R  E  A  E  E  K  T  *  D  G  D  D  N  N  E  T  V  S  C  *  K  P  I  A  R  S  S  V  E  T  A  Y  L  Q  A  R  L  *  C  S  K  Q  *  Q  Q  Q  H  H  P  T  F  *  V  *  *  *  S  I  M  E  S  R  I  W  R  Y  L  S  R  T  H  M  S  H  V  *  L  N  Y  G  N  T  *  R  P  C  S  G  L  C  *  K  K  P  A  H  L  D  H  T  L  V  L  F  R  D  E  L  A  V  F  L  L  I  L  S  F  F  *  N  L  I  D  Q  I  *  H  L  L  *  A  V  S  S  A  C  *  *  *  C  L  C  I  L  K  S  H  S  T  L  C  T  S   </first_frame>
            <second_frame>  P  P  E  K  *  T  L  F  L  S  S  E  M  S  E  N  R  F  L  G  N  I  S  A  S  S  F  R  N  L  L  P  K  S  V  S  T  K  K  K  L  S  S  S  R  F  K  H  K  M  N  S  E  N  V  A  P  I  D  P  N  V  Q  I  S  D  P  P  L  L  P  T  S  S  I  L  K  K  T  V  L  K  T  I  D  S  D  V  S  T  E  L  T  R  S  V  A  Q  E  Q  T  S  E  A  P  D  P  P  V  K  :  V  V  A  R  I  K  P  A  N  G  I  E  S  G  T  Q  A  V  R  K  A  S  D  T  S  V  C  V  A  D  R  K  F  N  F  D  M  V  F  G  S  N  S  N  Q  :  E  D  V  F  Q  S  V  G  A  P  L  V  K  D  A  L  A  G  Y  N  T  S  L  L  A  Y  G  Q  :  T  G  S  G  K  T  Y  T  M  W  G  P  P  S  S  I  V  E  V  P  S  P  N  G  L  Q  G  I  V  P  R  I  F  Q  T  L  F  S  S  I  Q  K  :  E  Q  E  N  S  E  G  K  Q  I  N  Y  Q  C  R  C  S  F  L  E  :  I  Y  D  E  H  I  G  D  L  L  D  P  T  Q  R  N  L  K  :  I  M  D  D  P  R  V  G  F  Y  V  E  N  I  T  E  E  Y  V  S  T  Y  E  D  V  S  Q  M  L  I  K  :  G  L  S  S  R  K  V  G  S  T  S  I  N  S  K  S  S  R  S  H  I  V  F  T  C  V  I  E  S  W  C  K  :  E  S  S  S  T  C  F  G  S  S  K  M  S  R  M  S  L  V  D  L  A  G  F  D  K  N  I  P  D  D  A  G  K  Q  L  V  K  E  G  K  Y  V  K  K  S  T  S  L  L  G :   H  L  V  N  V  L  S  E  R  S  Q  S  R  K  L  E  D  V  S  Y  S  S  S  T  L  T  H  L  M  R  E  S  L  G  G  N  A  K  L  S  V  I  C  A  I  S  P  E  N  K :   H  N  S  E  T  V  S  T  L  R  F  G  K  R  V  K  L  T  P  N  E  P  L  V  N  E  I  T  E  D  D  V  N  G  L  S  D  Q  I  R  Q  L  K  :  E  E  L  I  R  A  R  S  S  A  S  I  S  V  G  S  N  Y  G  S  F  R  G  P  N  V  R  E  S  L  N  Q  L  R  V  S  L  N  R  S  L  I  L  P  D  I  D  N  E  R  E  E  E  E  V  H  I  N  E  D  D  I  K  E  L  Q  L  Q  I  N  N  L  R  G  S  R  G  N  N  S  N  S  L  K  Y  S  S  G  E  S  E  H  Y  L  S  C  S  E  E  S  E  G  E  E  I  N  S  D  E  I  L  E  E  T  L  D  D  A  D  Q  E  M  E  T  M  Q  P  E  Y  C  S  S  I  S  I  G  P  S  R  H  S  A  D  L  P  G  P  V  L  S  E  S  P  K  F  R  N  M  Q  R  K  S  L  I  I  S  G  E  D  N  I  Q  S  S  S  K  S  S  E  L  P  S  L  P  Q  K  Q  D  L  V  Q  S  S  L  R  S  S  R  I  F  P  G  P  T  E  S  L  A  A  S  L  H  R  G  L  E  I  I  D  Y  H  Q  R  N  S  A  S  N  K  S  L  V  S  F  S  F  E  H  L  A  V  N  P  S  P  M  S  N  G  K  A  N  A  S  I  Q  T  S  S  E  E  G  Q  S  S  P  F  V  A  A  T  F  L  C  P  K  C  K  T  K  A  T  S  S  S  V  V  K  D  S  T  G  T  W  M  V  S  M  E  G  T  S  T  D  Q  :  D  S  E  K  V  L  F  Q  A  L  E  R  E  K  Q  L  E  S  V  C  K  D  Q  A  D  K  I  E  Q  L  N  Q  R  :  L  A  R  C  K  C  T  Q  E  Q  S  S  L  V  D  C  G  K  D  V  V  D  L  H  D  N  E  N  Q  A  S  I  I  Y  Q  N  G  S  Q  S  P  N  I  P  K  :  L  L  K  W  D  D  E  S  P  E  P  E  A  A  G  E  K  Y  E  T  K  E  I  Q  G  N  V  E  N  S  G  G  K  K  M  F  D  M  A  E  R  E  A  L  L  K  E  I  G  G  L  R  A  Q  L  K  S  D  G  A  S  T  N  K  S  L  E  R  T  R  S  S  L  L  A  Q  S  M  Q  L  R  K  S  G  V  Y  A  T  T  G  S  G  E  E  L  E  K  E  R  E  R  W  T  E  M  E  S  E  W  I  C  L  T  D  E  L  R  I  D  L  E  A  Y  R  Q  R  A  E  K  V  A  M  E  L  M  L  E  K  K  C  T  D  E  L  D  D  A  L  K  R  S  V  F  G  Q  A  R  I  I  E  H  Y  A  E  L  Q  E  K  Y  N  D  L  A  E  K  H  K  L  I  L  Q  G  I  Q  D  V  K  N  A  A  A  K  A  G  K  K  G  H  G  A  R  F  A  K  S  L  A  A  E  L  S  A  L  R  V  E  R  E  R  E  R  E  M  L  K  K  E  N  K  S  L  R  V  Q  L  K  D  T  A  E  A  V  H  A  A  G  E  L  L  V  R  L  R  E  A  E  E  T  A  S  L  A  E  :  E  N  F  T  Q  S  K  E  E  N  E  R  L  K  K  Q  I  E  K  L  K  R  K  H  K  M  E  M  I  T  M  K  Q  Y  L  A  E  S  R  L  P  E  A  A  L  R  P  P  I  Y  R  Q  D  S  D  V  A  N  N  D  N  N  N  T  I  Q  H  S  E  Y  D  D  D  Q  S  W  R  A  E  F  G  A  I  Y  Q  E  H  I  *  A  M  F  D  *  T  M  E  T  R  E  D  P  A  R  D  F  A  E  K  N  L  L  I  L  I  T  P  *  C  Y  S  G  M  N  W  L  Y  S  Y  *  F  Y  H  S  F  E  T  *  L  T  R  F  D  I  C  C  E  L  F  L  Q  L  V  N  N  N  A  Y  V  S  *  K  V  I  Q  L  Y  A  Q  V  </second_frame>
            <third_frame>   R  R  K  N  K  R  S  F  L  V  Q  K  C  Q  K  T  D  S  *  A  T  F  L  R  L  R  S  E  I  Y  F  Q  N  Q  F  Q  L  R  K  S  *  V  Q  V  D  L  S  I  K  *  T  V  K  M  L  L  L  *  I  P  T  F  R  S  V  I  H  R  C  Y  L  R  V  R  Y  L  K  K  P  S  *  R  R  L  I  V  M  Y  R  Q  N  S  P  D  L  L  H  R  N  K  H  Q  K  L  L  I  H  Q  L  R :   L  L  Q  G  L  N  L  L  M  V  L  R  V  E  P  K  R  F  A  K  L  L  I  P  Q  C  V  L  L  I  E  S  L  T  L  T  W  F  L  V  Q  I  R  I  R :   K  M  Y  F  N  R  L  V  P  L  *  L  R  M  H  W  Q  V  T  T  L  L  S  *  L  M  D  R :   L  E  V  A  R  L  I  Q  C  G  D  L  L  V  P  L  L  K  F  H  H  L  M  V  F  K  A  L  C  R  A  F  F  R  H  C  F  L  V  Y  K  K :   S  K  R  T  L  K  V  N  R  *  I  T  S  V  V  A  R  S  *  R :   Y  M  M  N  T  L  G  I  Y  L  I  L  H  R  E  T  *  R :   *  W  M  I  Q  E  L  D  S  M  L  R  T  *  L  R  N  M  C  L  P  T  R  M  Y  H  K  C  *  L  R :   V  F  Q  V  E  K  L  D  Q  R  A  S  I  R  R  V  L  G  P  I  L  F  L  P  A  S  L  S  P  G  A  R :   S  P  H  Q  R  V  L  V  A  Q  R  *  A  E  *  A  L  L  I  L  L  D  L  T  K  I  Y  L  M  M  P  V  N  S  L  L  R  K  G  S  M  *  R  S  P  H  H  C  S   : G  I  W  L  M  S  S  L  K  G  V  S  P  G  N  L  R  M  F  R  T  A  V  P  L  *  L  I  *  *  E  N  H  L  V  G  M  L  N  S  P  S  Y  V  L  S  A  Q  K  T   : S  I  I  V  K  Q  *  A  L  *  D  L  G  N  G  L  N  S  H  Q  M  S  H  W  *  M  K  *  Q  K  T  M  L  M  A  *  V  I  R  F  A  N  *  R :   K  S  L  *  E  L  G  Q  V  Q  A  F  Q  S  E  A  T  M  D  P  S  E  D  Q  M  Y  V  K  V  *  I  S  *  E  *  A  L  T  V  H  S  S  Y  L  T  *  I  M  S  V  K  K  K  R  F  T  *  M  R  M  I  *  K  N  Y  S  S  R  S  I  T  Y  V  V  H  V  E  I  T  Q  T  L  S  S  I  H  L  E  K  V  N  T  I  S  A  V  Q  K  K  V  K  V  K  K  L  T  Q  M  R  Y  W  R  R  P  L  M  M  L  T  K  R  W  K  R  C  S  L  N  T  V  A  A  S  Q  *  A  H  P  A  I  L  L  I  F  L  A  R  C  Y  L  S  P  Q  S  F  G  T  C  R  G  R  A  *  L  S  P  V  K  I  I  F  K  V  P  P  K  V  L  N  C  L  P  C  H  R  N  K  T  L  S  S  L  L  *  G  P  A  E  Y  F  L  G  Q  L  N  P  W  L  P  V  Y  I  E  D  *  R  S  L  I  I  T  K  G  I  P  H  Q  I  N  L  W  F  P  S  L  L  N  I  W  Q  *  T  Q  A  Q  C  Q  M  V  R  P  M  L  L  F  K  H  H  R  K  R  D  N  L  L  L  L  *  P  L  H  S  C  V  Q  S  A  R  R  K  Q  H  P  L  V  L  L  R  I  A  L  G  H  G  W  F  P  W  K  G  Q  V  R  I  K :   I  R  R  K  F  C  S  K  L  *  R  E  R  S  S  L  K  V  Y  A  R  I  K  Q  T  K  L  S  S  *  T  N  D :   *  P  A  V  S  A  H  K  N  R  V  L  *  L  I  V  A  R  M  S  L  I  S  T  T  M  R  I  K  L  Q  *  S  I  R  M  G  V  N  H  P  T  S  Q  S :   S  *  N  G  T  M  K  V  L  S  L  K  L  Q  E  R  S  M  K  L  K  K  F  R  A  M  S  K  T  V  A  G  K  K  C  L  I  W  L  R  E  K  H  Y  L  K  K  L  E  A  *  G  P  N  *  S  Q  M  E  P  P  Q  T  N  H  L  K  E  P  D  P  L  C  *  H  N  Q  C  S  *  E  K  V  V  Y  M  L  L  R  V  L  V  K  N  L  R  R  K  E  K  D  G  L  R  W  K  V  S  G  F  V  *  L  M  S  L  E  L  I  L  R  L  I  A  S  V  Q  K  R  W  Q  W  N  *  C  W  R  R  N  A  R  M  S  W  M  M  P  S  K  D  P  S  L  G  K  P  E  *  L  S  I  T  R  N  Y  R  R  S  T  T  T  *  L  R  S  I  S  *  S  C  K  G  Y  K  M  *  K  M  L  Q  Q  K  Q  E  R  K  A  M  V  L  V  S  P  S  L  S  L  Q  S  C  Q  L  *  E  W  K  G  K  E  R  G  K  C  *  K  R  R  I  K  A  *  E  F  N  L  K  T  L  L  K  L  F  M  Q  P  E  N  F  L  L  D  *  E  K  R  R  K  Q  L  H  L  L  R :   R  T  L  H  N  Q  R  K  R  M  R  D  *  R  S  K  *  R  S  *  R  E  N  I  R  W  R  *  *  Q  *  N  S  I  L  L  K  A  D  C  Q  K  Q  R  *  D  R  L  F  T  G  K  T  L  M  *  Q  T  M  T  T  T  T  P  S  N  I  L  S  M  M  M  I  N  H  G  E  Q  N  L  A  L  F  I  K  N  T  Y  E  P  C  L  I  E  L  W  K  H  V  K  T  L  L  G  T  L  L  K  K  T  C  S  S  *  S  H  L  S  V  I  Q  G  *  I  G  C  I  L  I  D  F  I  I  L  L  K  L  D  *  P  D  L  T  F  V  V  S  C  F  F  S  L  L  I  I  M  L  M  Y  P  K  K  S  F  N  F  M  H  K  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72780" stop="72466"/>
                    <exon start="72226" stop="72092"/>
                    <exon start="71616" stop="71533"/>
                    <exon start="71449" stop="71324"/>
                    <exon start="71240" stop="71181"/>
                    <exon start="71097" stop="71044"/>
                    <exon start="70947" stop="70855"/>
                    <exon start="70723" stop="70628"/>
                    <exon start="70446" stop="70298"/>
                    <exon start="69957" stop="69808"/>
                    <exon start="69586" stop="69457"/>
                    <exon start="69365" stop="68451"/>
                    <exon start="68357" stop="68259"/>
                    <exon start="68170" stop="68036"/>
                    <exon start="67946" stop="67158"/>
                    <exon start="67072" stop="66806"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>3594</number_coding_nucleotides>
                  <number_encoded_amino_acids>1198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLFLSSEMSENRFLGNISASSFRNLLPKSVSTKKKLSSSRFKHKMNSENVAPIDPNVQISDPPLLPTSSILKKTVLKTIDSDVSTELTRSVAQEQTSEAPDPPVKVVARIKPANGIESGTQAVRKASDTSVCVADRKFNFDMVFGSNSNQEDVFQSVGAPLVKDALAGYNTSLLAYGQTGSGKTYTMWGPPSSIVEVPSPNGLQGIVPRIFQTLFSSIQKEQENSEGKQINYQCRCSFLEIYDEHIGDLLDPTQRNLKIMDDPRVGFYVENITEEYVSTYEDVSQMLIKGLSSRKVGSTSINSKSSRSHIVFTCVIESWCKESSSTCFGSSKMSRMSLVDLAGFDKNIPDDAGKQLVKEGKYVKKSTSLLGHLVNVLSERSQSRKLEDVSYSSSTLTHLMRESLGGNAKLSVICAISPENKHNSETVSTLRFGKRVKLTPNEPLVNEITEDDVNGLSDQIRQLKEELIRARSSASISVGSNYGSFRGPNVRESLNQLRVSLNRSLILPDIDNEREEEEVHINEDDIKELQLQINNLRGSRGNNSNSLKYSSGESEHYLSCSEESEGEEINSDEILEETLDDADQEMETMQPEYCSSISIGPSRHSADLPGPVLSESPKFRNMQRKSLIISGEDNIQSSSKSSELPSLPQKQDLVQSSLRSSRIFPGPTESLAASLHRGLEIIDYHQRNSASNKSLVSFSFEHLAVNPSPMSNGKANASIQTSSEEGQSSPFVAATFLCPKCKTKATSSSVVKDSTGTWMVSMEGTSTDQDSEKVLFQALEREKQLESVCKDQADKIEQLNQRLARCKCTQEQSSLVDCGKDVVDLHDNENQASIIYQNGSQSPNIPKLLKWDDESPEPEAAGEKYETKEIQGNVENSGGKKMFDMAEREALLKEIGGLRAQLKSDGASTNKSLERTRSSLLAQSMQLRKSGVYATTGSGEELEKERERWTEMESEWICLTDELRIDLEAYRQRAEKVAMELMLEKKCTDELDDALKRSVFGQARIIEHYAELQEKYNDLAEKHKLILQGIQDVKNAAAKAGKKGHGARFAKSLAAELSALRVEREREREMLKKENKSLRVQLKDTAEAVHAAGELLVRLREAEETASLAEENFTQSKEENERLKKQIEKLKRKHKMEMITMKQYLAESRLPEAALRPPIYRQDSDVANNDNNNTIQHSEYDDDQSWRAEFGAIYQEHI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="67278" PGL_stop="67953"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67278" e_stop="67953"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="67278" e_stop="67953" e_length="676"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67278" stop="67953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414326" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTTCCCTCTCTCTTTCCCTTTCCACTCTCAAAGCTGACAGCTCTGCAGCGAGAGACTTGGCGAAACGAGCACCATGGCCTTTCTTTCCTGCTTTTGCTGCAGCATTTTTCACATCTTGTATCCCTTGCAAGATCAACTTATGCTTCTCAGCTAAGTCGTTGTACTTCTCCTGTAATTCCGCGTAATGCTCAATTATTCTGGCTTGCCCAAAGACGGATCTTTTGAGGGCATCATCCAACTCATCCGTGCATTTCTTCTCCAACATTAATTCCATTGCCACCTTTTCTGCACGCTGGCGATAAGCCTCAAGATCAATTCTAAGCTCATCAGTTAGACAAATCCACTCACTTTCCATCTCAGTCCATCTTTCTCTTTCCTTCTCAAGTTCTTCACCAGAACCCGTAGTAGCATATACACCACTTTTTCTCAGCTGCATTGATTGTGCTAACAAAGAGGATCTGGTTCTTTCAAGTGATTTGTTTGTGGAGGCTCCATCTGACTTCAATTGGGCCCTTAGGCCTCCAATTTCTTTAAGTAGTGCTTCTCTCTCAGCCATATCAAACATTTTTTTCCCGCCACTGTTTTCGACATTGCCCTGAATTTCTTTAGTTTCATACTTCTCTCCTGCAGCTTCAGGCTCAGGACTTTCATCGTCCCATTTCAGGAGCTGAAGC</gDNA_template>
            <first_frame> H  F  P  L  S  F  P  F  H  S  Q  S  *  Q  L  C  S  E  R  L  G  E  T  S  T  M  A  F  L  S  C  F  C  C  S  I  F  H  I  L  Y  P  L  Q  D  Q  L  M  L  L  S  *  V  V  V  L  L  L  *  F  R  V  M  L  N  Y  S  G  L  P  K  D  G  S  F  E  G  I  I  Q  L  I  R  A  F  L  L  Q  H  *  F  H  C  H  L  F  C  T  L  A  I  S  L  K  I  N  S  K  L  I  S  *  T  N  P  L  T  F  H  L  S  P  S  F  S  F  L  L  K  F  F  T  R  T  R  S  S  I  Y  T  T  F  S  Q  L  H  *  L  C  *  Q  R  G  S  G  S  F  K  *  F  V  C  G  G  S  I  *  L  Q  L  G  P  *  A  S  N  F  F  K  *  C  F  S  L  S  H  I  K  H  F  F  P  A  T  V  F  D  I  A  L  N  F  F  S  F  I  L  L  S  C  S  F  R  L  R  T  F  I  V  P  F  Q  E  L  K  </first_frame>
            <second_frame>  I  S  L  S  L  S  L  S  T  L  K  A  D  S  S  A  A  R  D  L  A  K  R  A  P  W  P  F  F  P  A  F  A  A  A  F  F  T  S  C  I  P  C  K  I  N  L  C  F  S  A  K  S  L  Y  F  S  C  N  S  A  *  C  S  I  I  L  A  C  P  K  T  D  L  L  R  A  S  S  N  S  S  V  H  F  F  S  N  I  N  S  I  A  T  F  S  A  R  W  R  *  A  S  R  S  I  L  S  S  S  V  R  Q  I  H  S  L  S  I  S  V  H  L  S  L  S  F  S  S  S  S  P  E  P  V  V  A  Y  T  P  L  F  L  S  C  I  D  C  A  N  K  E  D  L  V  L  S  S  D  L  F  V  E  A  P  S  D  F  N  W  A  L  R  P  P  I  S  L  S  S  A  S  L  S  A  I  S  N  I  F  F  P  P  L  F  S  T  L  P  *  I  S  L  V  S  Y  F  S  P  A  A  S  G  S  G  L  S  S  S  H  F  R  S  *  S </second_frame>
            <third_frame>   F  P  S  L  F  P  F  P  L  S  K  L  T  A  L  Q  R  E  T  W  R  N  E  H  H  G  L  S  F  L  L  L  L  Q  H  F  S  H  L  V  S  L  A  R  S  T  Y  A  S  Q  L  S  R  C  T  S  P  V  I  P  R  N  A  Q  L  F  W  L  A  Q  R  R  I  F  *  G  H  H  P  T  H  P  C  I  S  S  P  T  L  I  P  L  P  P  F  L  H  A  G  D  K  P  Q  D  Q  F  *  A  H  Q  L  D  K  S  T  H  F  P  S  Q  S  I  F  L  F  P  S  Q  V  L  H  Q  N  P  *  *  H  I  H  H  F  F  S  A  A  L  I  V  L  T  K  R  I  W  F  F  Q  V  I  C  L  W  R  L  H  L  T  S  I  G  P  L  G  L  Q  F  L  *  V  V  L  L  S  Q  P  Y  Q  T  F  F  S  R  H  C  F  R  H  C  P  E  F  L  *  F  H  T  S  L  L  Q  L  Q  A  Q  D  F  H  R  P  I  S  G  A  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67582" stop="67878"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASRSILSSSVRQIHSLSISVHLSLSFSSSSPEPVVAYTPLFLSCIDCANKEDLVLSSDLFVEAPSDFNWALRPPISLSSASLSAISNIFFPPLFSTLP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67280" stop="67504"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPSLFPFPLSKLTALQRETWRNEHHGLSFLLLLQHFSHLVSLARSTYASQLSRCTSPVIPRNAQLFWLAQRRIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="77719" PGL_stop="81067"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77719" e_stop="77891"/>
            <exon e_start="79514" e_stop="81067"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.983" e_score="0.933"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="77719" e_stop="77891" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="77892" i_stop="79513" i_length="1622"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="79514" e_stop="81067" e_length="1554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77719" stop="77891"/>
              <exon start="79514" stop="79865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77728" stop="77891"/>
              <exon start="79514" stop="79778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77728" stop="77891"/>
              <exon start="79514" stop="79680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77731" stop="77891"/>
              <exon start="79514" stop="79922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77741" stop="77891"/>
              <exon start="79514" stop="79843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77750" stop="77891"/>
              <exon start="79514" stop="79897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77821" stop="77891"/>
              <exon start="79514" stop="80053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77821" stop="77891"/>
              <exon start="79514" stop="80022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79516" stop="80155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79526" stop="80439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79573" stop="79942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79600" stop="80450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79601" stop="80149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79839" stop="80381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79841" stop="80530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79846" stop="80306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79879" stop="80469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79921" stop="80732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79924" stop="80560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79924" stop="80341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79927" stop="80616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79955" stop="80470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80015" stop="80857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80109" stop="81061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80194" stop="80932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80253" stop="81024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80290" stop="81047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80290" stop="80998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80290" stop="80814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80310" stop="80881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80310" stop="80822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80310" stop="80808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80438" stop="81067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80466" stop="80984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80478" stop="80984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234629" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80557" stop="80984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235109" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGACTTTCTGACAAACTTCCAAATCCACTATCATCATTCTTGTTGATTTTATTCTCTGCAAATCACAATTATTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCT : GTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGTTGAAGACTTGTTTTACTTCAGTACCTTGTAGTTAATTAGAACTTCTGTTCTTAATATATGCTCAGCATTTCCCTTGGAATAATTTTG</gDNA_template>
            <first_frame> G  L  S  D  K  L  P  N  P  L  S  S  F  L  L  I  L  F  S  A  N  H  N  Y  S  H  P  L  L  R  F  K  S  W  V  F  F  I  F  H  K  R  S  L  F  W  V  D  F  W  L  D  N  Q  R  L  S  L :   L  Y  L  W  S  A  S  W  I  L  H  S  L  L  C  H  H  L  R  V  P  P  F  S  R  T  L  R  S  K  A  M  N  F  S  A  R  T  L  L  V  Y  P  G  E  F  L  L  I  E  R  M  L  K  S  A  T  W  R  T  S  L  V  F  S  T  C  T  Y  I  R  L  E  I  S  T  T  S  A  F  T  I  N  K  M  F  M  Q  N  F  A  L  Q  V  I  L  K  V  Q  S  P  L  K  P  L  M  A  V  G  K  V  Q  S  S  T  K  I  *  S  S  M  F  V  R  *  N  V  L  L  N  V  R  Y  G  *  *  A  G  *  G  I  I  W  K  T  N  C  W  D  L  H  *  S  P  Y  L  K  S  S  *  K  M  E  R  *  K  K  S  S  L  L  F  V  D  *  S  L  S  L  P  S  R  I  C  A  L  V  P  F  L  Q  W  N  F  T  *  S  Y  *  N  S  C  F  S  H  I  R  N  *  C  I  S  D  R  R  R  S  T  *  V  P  S  K  *  V  *  Q  N  *  V  P  R  S  *  D  C  K  *  E  *  S  H  G  L  R  V  L  Q  Y  A  K  Q  *  S  R  F  S  K  L  G  *  L  G  L  F  *  Y  G  K  P  A  Q  S  R  S  R  C  P  Y  G  K  C  S  K  *  G  Y  *  F  P  P  I  S  *  A  *  F  A  S  *  Q  H  I  N  H  *  L  S  N  S  F  A  S  R  K  L  S  V  L  R  D  P  R  S  F  Q  V  A  R  G  R  I  C  I  S  F  *  R  M  S  H  R  *  K  *  C  W  K  C  *  E  Q  H  I  G  K  Q  A  T  Q  C  I  S  K  A  S  G  H  *  A  R  A  E  G  C  A  T  G  Y  C  G  Y  V  H  E  K  Y  A  A  I  Y  *  V  I  G  K  D  E  A  S  A  G  H  *  K  W  D  N  Q  F  *  *  F  E  F  R  S  D  I  A  D  A  Q  E  H  *  L  K  G  V  L  W  Q  Q  S  F  L  L  S  F  C  E  W  F  S  N  N  L  *  R  D  *  E  Q  V  *  K  D  K  *  T  L  R  I  L  *  M  W  C  L  S  I  L  S  C  E  C  L  K  C  S  E  L  I  N  F  L  S  V  E  D  L  F  Y  F  S  T  L  *  L  I  R  T  S  V  L  N  I  C  S  A  F  P  L  E  *  F   </first_frame>
            <second_frame>  D  F  L  T  N  F  Q  I  H  Y  H  H  S  C  *  F  Y  S  L  Q  I  T  I  I  L  I  L  C  F  V  L  R  V  G  F  S  S  F  S  I  K  D  H  S  F  G  *  I  F  G  L  I  I  R  D  S  V   : C  Y  I  C  G  Q  L  H  G  F  S  T  V  C  C  V  T  I  *  E  F  L  R  F  R  G  L  *  E  A  K  Q  *  I  F  Q  Q  E  R  F  W  S  I  P  G  N  F  C  S  *  R  G  C  *  N  L  Q  H  G  G  L  H  W  C  S  R  R  V  R  T  S  G  *  R  Y  P  Q  H  L  H  L  P  *  T  R  C  L  C  K  T  L  P  Y  K  *  S  *  K  C  S  L  H  S  N  H  *  W  R  W  E  K  S  S  L  Q  R  K  S  K  A  Q  C  S  Y  D  K  M  F  C  *  M  *  D  M  D  D  E  Q  G  E  E  L  F  G  R  P  I  V  G  I  C  T  S  P  L  I  *  N  P  H  E  K  W  K  G  R  K  R  V  L  S  F  S  S  T  D  L  F  H  S  P  A  G  F  V  H  L  S  L  S  Y  N  G  T  S  P  E  V  I  E  I  P  A  F  P  I  L  E  T  D  A  S  R  T  D  G  E  A  R  E  S  L  P  N  E  F  D  K  I  E  F  P  D  P  K  I  V  N  E  N  N  L  M  V  S  E  Y  F  N  M  P  S  S  N  P  D  S  Q  S  S  D  S  L  V  S  S  D  T  E  N  Q  L  S  L  E  V  D  V  H  M  E  N  V  P  S  E  A  T  N  F  H  Q  Y  P  K  R  D  S  P  P  S  S  I  S  T  I  D  S  P  T  V  L  H  P  A  S  S  Q  S  S  E  T  Q  G  A  S  K  S  P  E  E  E  Y  A  S  A  S  K  E  C  P  T  G  K  N  N  V  G  N  A  E  S  N  I  S  E  S  K  P  P  S  A  F  P  K  P  V  V  I  E  P  E  Q  K  V  V  Q  Q  D  I  V  D  M  Y  M  K  S  M  Q  Q  F  T  E  S  L  A  K  M  K  L  P  L  D  I  E  N  G  T  T  S  S  D  N  S  S  S  D  Q  T  S  Q  T  P  K  S  T  S  S  R  V  F  Y  G  S  R  A  F  F  *  A  F  V  N  G  S  R  I  T  Y  S  A  I  R  S  K  S  K  R  I  S  E  H  *  G  F  Y  E  C  G  V  Y  P  F  Y  L  V  N  A  *  N  A  L  N  *  L  T  F  C  L  L  K  T  C  F  T  S  V  P  C  S  *  L  E  L  L  F  L  I  Y  A  Q  H  F  P  W  N  N  F  </second_frame>
            <third_frame>   T  F  *  Q  T  S  K  S  T  I  I  I  L  V  D  F  I  L  C  K  S  Q  L  F  S  S  F  A  S  F  *  E  L  G  F  L  H  F  P  *  K  I  T  L  L  G  R  F  L  A  *  *  S  E  T  Q  S  :  V  I  F  V  V  S  F  M  D  S  P  Q  S  V  V  S  P  F  K  S  S  S  V  F  A  D  S  E  K  Q  S  N  E  F  F  S  K  N  A  S  G  L  S  R  G  I  S  A  H  R  E  D  V  E  I  C  N  M  E  D  F  I  G  V  L  D  V  Y  V  H  Q  A  R  D  I  H  N  I  C  I  Y  H  K  Q  D  V  Y  A  K  L  C  L  T  S  D  P  E  S  A  V  S  T  Q  T  I  N  G  G  G  K  S  P  V  F  N  E  N  L  K  L  N  V  R  T  I  K  C  S  V  K  C  E  I  W  M  M  S  R  V  R  N  Y  L  E  D  Q  L  L  G  F  A  L  V  P  L  S  E  I  L  M  K  N  G  K  V  E  K  E  F  S  P  F  R  R  L  I  S  F  T  P  Q  Q  D  L  C  T  C  P  F  L  T  M  E  L  H  L  K  L  L  K  F  L  L  F  P  Y  *  K  L  M  H  L  G  Q  T  A  K  H  V  S  P  F  Q  M  S  L  T  K  L  S  S  Q  I  L  R  L  *  M  R  I  I  S  W  S  P  S  T  S  I  C  Q  A  V  I  Q  I  L  K  A  R  I  A  W  S  L  L  I  R  K  T  S  S  V  *  K  S  M  S  I  W  K  M  F  Q  V  R  L  L  I  S  T  N  I  L  S  V  I  R  L  L  A  A  Y  Q  P  L  T  L  Q  Q  F  C  I  P  Q  A  L  S  P  P  R  P  K  E  L  P  S  R  Q  R  K  N  M  H  Q  L  L  K  N  V  P  Q  V  K  I  M  L  E  M  L  R  A  T  Y  R  K  A  S  H  P  V  H  F  Q  S  Q  W  S  L  S  Q  S  R  R  L  C  N  R  I  L  W  I  C  T  *  K  V  C  S  N  L  L  S  H  W  Q  R  *  S  F  R  W  T  L  K  M  G  Q  P  V  L  I  I  R  V  Q  I  R  H  R  R  R  P  R  A  L  A  Q  G  C  S  M  A  A  E  L  S  S  K  L  L  *  M  V  L  E  *  L  I  A  R  L  G  A  S  L  K  G  *  V  N  T  K  D  F  M  N  V  V  F  I  H  F  I  L  *  M  L  K  M  L  *  T  N  *  L  F  V  C  *  R  L  V  L  L  Q  Y  L  V  V  N  *  N  F  C  S  *  Y  M  L  S  I  S  L  G  I  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79984" stop="80829"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>843</number_coding_nucleotides>
                  <number_encoded_amino_acids>281</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPHEKWKGRKRVLSFSSTDLFHSPAGFVHLSLSYNGTSPEVIEIPAFPILETDASRTDGEARESLPNEFDKIEFPDPKIVNENNLMVSEYFNMPSSNPDSQSSDSLVSSDTENQLSLEVDVHMENVPSEATNFHQYPKRDSPPSSISTIDSPTVLHPASSQSSETQGASKSPEEEYASASKECPTGKNNVGNAESNISESKPPSAFPKPVVIEPEQKVVQQDIVDMYMKSMQQFTESLAKMKLPLDIENGTTSSDNSSSDQTSQTPKSTSSRVFYGSRAFF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77719" stop="77891"/>
                    <exon start="79514" stop="79868"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLSDKLPNPLSSFLLILFSANHNYSHPLLRFKSWVFFIFHKRSLFWVDFWLDNQRLSLLYLWSASWILHSLLCHHLRVPPFSRTLRSKAMNFSARTLLVYPGEFLLIERMLKSATWRTSLVFSTCTYIRLEISTTSAFTINKMFMQNFALQVILKVQSPLKPLMAVGKVQSSTKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="77720" e_stop="77895"/>
            <exon e_start="79514" e_stop="81067"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.287" acc_prob="0.983" e_score="0.994"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="77720" e_stop="77895" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.287" acc_prob="0.983">
            <gDNA_intron_boundary i_start="77896" i_stop="79513" i_length="1618"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="79514" e_stop="81067" e_length="1554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77720" stop="77895"/>
              <exon start="79514" stop="80054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77721" stop="77895"/>
              <exon start="79514" stop="79564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77728" stop="77895"/>
              <exon start="79514" stop="80189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77761" stop="77895"/>
              <exon start="79514" stop="80015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77772" stop="77895"/>
              <exon start="79514" stop="79934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77778" stop="77895"/>
              <exon start="79514" stop="80142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77795" stop="77895"/>
              <exon start="79514" stop="80201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77858" stop="77895"/>
              <exon start="79514" stop="80074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79516" stop="80155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79526" stop="80439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79573" stop="79942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79600" stop="80450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79601" stop="80149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79839" stop="80381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79841" stop="80530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79846" stop="80306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79879" stop="80469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79921" stop="80732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79924" stop="80560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79924" stop="80341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79927" stop="80616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79955" stop="80470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80015" stop="80857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80109" stop="81061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80194" stop="80932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80253" stop="81024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80290" stop="81047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80290" stop="80998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80290" stop="80814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80310" stop="80881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80310" stop="80822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80310" stop="80808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80438" stop="81067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80466" stop="80984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80478" stop="80984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234629" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80557" stop="80984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235109" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACTTTCTGACAAACTTCCAAATCCACTATCATCATTCTTGTTGATTTTATTCTCTGCAAATCACAATTATTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTG : GTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGTTGAAGACTTGTTTTACTTCAGTACCTTGTAGTTAATTAGAACTTCTGTTCTTAATATATGCTCAGCATTTCCCTTGGAATAATTTTG</gDNA_template>
            <first_frame> D  F  L  T  N  F  Q  I  H  Y  H  H  S  C  *  F  Y  S  L  Q  I  T  I  I  L  I  L  C  F  V  L  R  V  G  F  S  S  F  S  I  K  D  H  S  F  G  *  I  F  G  L  I  I  R  D  S  V  C  W :   L  Y  L  W  S  A  S  W  I  L  H  S  L  L  C  H  H  L  R  V  P  P  F  S  R  T  L  R  S  K  A  M  N  F  S  A  R  T  L  L  V  Y  P  G  E  F  L  L  I  E  R  M  L  K  S  A  T  W  R  T  S  L  V  F  S  T  C  T  Y  I  R  L  E  I  S  T  T  S  A  F  T  I  N  K  M  F  M  Q  N  F  A  L  Q  V  I  L  K  V  Q  S  P  L  K  P  L  M  A  V  G  K  V  Q  S  S  T  K  I  *  S  S  M  F  V  R  *  N  V  L  L  N  V  R  Y  G  *  *  A  G  *  G  I  I  W  K  T  N  C  W  D  L  H  *  S  P  Y  L  K  S  S  *  K  M  E  R  *  K  K  S  S  L  L  F  V  D  *  S  L  S  L  P  S  R  I  C  A  L  V  P  F  L  Q  W  N  F  T  *  S  Y  *  N  S  C  F  S  H  I  R  N  *  C  I  S  D  R  R  R  S  T  *  V  P  S  K  *  V  *  Q  N  *  V  P  R  S  *  D  C  K  *  E  *  S  H  G  L  R  V  L  Q  Y  A  K  Q  *  S  R  F  S  K  L  G  *  L  G  L  F  *  Y  G  K  P  A  Q  S  R  S  R  C  P  Y  G  K  C  S  K  *  G  Y  *  F  P  P  I  S  *  A  *  F  A  S  *  Q  H  I  N  H  *  L  S  N  S  F  A  S  R  K  L  S  V  L  R  D  P  R  S  F  Q  V  A  R  G  R  I  C  I  S  F  *  R  M  S  H  R  *  K  *  C  W  K  C  *  E  Q  H  I  G  K  Q  A  T  Q  C  I  S  K  A  S  G  H  *  A  R  A  E  G  C  A  T  G  Y  C  G  Y  V  H  E  K  Y  A  A  I  Y  *  V  I  G  K  D  E  A  S  A  G  H  *  K  W  D  N  Q  F  *  *  F  E  F  R  S  D  I  A  D  A  Q  E  H  *  L  K  G  V  L  W  Q  Q  S  F  L  L  S  F  C  E  W  F  S  N  N  L  *  R  D  *  E  Q  V  *  K  D  K  *  T  L  R  I  L  *  M  W  C  L  S  I  L  S  C  E  C  L  K  C  S  E  L  I  N  F  L  S  V  E  D  L  F  Y  F  S  T  L  *  L  I  R  T  S  V  L  N  I  C  S  A  F  P  L  E  *  F   </first_frame>
            <second_frame>  T  F  *  Q  T  S  K  S  T  I  I  I  L  V  D  F  I  L  C  K  S  Q  L  F  S  S  F  A  S  F  *  E  L  G  F  L  H  F  P  *  K  I  T  L  L  G  R  F  L  A  *  *  S  E  T  Q  S  V   : G  Y  I  C  G  Q  L  H  G  F  S  T  V  C  C  V  T  I  *  E  F  L  R  F  R  G  L  *  E  A  K  Q  *  I  F  Q  Q  E  R  F  W  S  I  P  G  N  F  C  S  *  R  G  C  *  N  L  Q  H  G  G  L  H  W  C  S  R  R  V  R  T  S  G  *  R  Y  P  Q  H  L  H  L  P  *  T  R  C  L  C  K  T  L  P  Y  K  *  S  *  K  C  S  L  H  S  N  H  *  W  R  W  E  K  S  S  L  Q  R  K  S  K  A  Q  C  S  Y  D  K  M  F  C  *  M  *  D  M  D  D  E  Q  G  E  E  L  F  G  R  P  I  V  G  I  C  T  S  P  L  I  *  N  P  H  E  K  W  K  G  R  K  R  V  L  S  F  S  S  T  D  L  F  H  S  P  A  G  F  V  H  L  S  L  S  Y  N  G  T  S  P  E  V  I  E  I  P  A  F  P  I  L  E  T  D  A  S  R  T  D  G  E  A  R  E  S  L  P  N  E  F  D  K  I  E  F  P  D  P  K  I  V  N  E  N  N  L  M  V  S  E  Y  F  N  M  P  S  S  N  P  D  S  Q  S  S  D  S  L  V  S  S  D  T  E  N  Q  L  S  L  E  V  D  V  H  M  E  N  V  P  S  E  A  T  N  F  H  Q  Y  P  K  R  D  S  P  P  S  S  I  S  T  I  D  S  P  T  V  L  H  P  A  S  S  Q  S  S  E  T  Q  G  A  S  K  S  P  E  E  E  Y  A  S  A  S  K  E  C  P  T  G  K  N  N  V  G  N  A  E  S  N  I  S  E  S  K  P  P  S  A  F  P  K  P  V  V  I  E  P  E  Q  K  V  V  Q  Q  D  I  V  D  M  Y  M  K  S  M  Q  Q  F  T  E  S  L  A  K  M  K  L  P  L  D  I  E  N  G  T  T  S  S  D  N  S  S  S  D  Q  T  S  Q  T  P  K  S  T  S  S  R  V  F  Y  G  S  R  A  F  F  *  A  F  V  N  G  S  R  I  T  Y  S  A  I  R  S  K  S  K  R  I  S  E  H  *  G  F  Y  E  C  G  V  Y  P  F  Y  L  V  N  A  *  N  A  L  N  *  L  T  F  C  L  L  K  T  C  F  T  S  V  P  C  S  *  L  E  L  L  F  L  I  Y  A  Q  H  F  P  W  N  N  F  </second_frame>
            <third_frame>   L  S  D  K  L  P  N  P  L  S  S  F  L  L  I  L  F  S  A  N  H  N  Y  S  H  P  L  L  R  F  K  S  W  V  F  F  I  F  H  K  R  S  L  F  W  V  D  F  W  L  D  N  Q  R  L  S  L  L  :  V  I  F  V  V  S  F  M  D  S  P  Q  S  V  V  S  P  F  K  S  S  S  V  F  A  D  S  E  K  Q  S  N  E  F  F  S  K  N  A  S  G  L  S  R  G  I  S  A  H  R  E  D  V  E  I  C  N  M  E  D  F  I  G  V  L  D  V  Y  V  H  Q  A  R  D  I  H  N  I  C  I  Y  H  K  Q  D  V  Y  A  K  L  C  L  T  S  D  P  E  S  A  V  S  T  Q  T  I  N  G  G  G  K  S  P  V  F  N  E  N  L  K  L  N  V  R  T  I  K  C  S  V  K  C  E  I  W  M  M  S  R  V  R  N  Y  L  E  D  Q  L  L  G  F  A  L  V  P  L  S  E  I  L  M  K  N  G  K  V  E  K  E  F  S  P  F  R  R  L  I  S  F  T  P  Q  Q  D  L  C  T  C  P  F  L  T  M  E  L  H  L  K  L  L  K  F  L  L  F  P  Y  *  K  L  M  H  L  G  Q  T  A  K  H  V  S  P  F  Q  M  S  L  T  K  L  S  S  Q  I  L  R  L  *  M  R  I  I  S  W  S  P  S  T  S  I  C  Q  A  V  I  Q  I  L  K  A  R  I  A  W  S  L  L  I  R  K  T  S  S  V  *  K  S  M  S  I  W  K  M  F  Q  V  R  L  L  I  S  T  N  I  L  S  V  I  R  L  L  A  A  Y  Q  P  L  T  L  Q  Q  F  C  I  P  Q  A  L  S  P  P  R  P  K  E  L  P  S  R  Q  R  K  N  M  H  Q  L  L  K  N  V  P  Q  V  K  I  M  L  E  M  L  R  A  T  Y  R  K  A  S  H  P  V  H  F  Q  S  Q  W  S  L  S  Q  S  R  R  L  C  N  R  I  L  W  I  C  T  *  K  V  C  S  N  L  L  S  H  W  Q  R  *  S  F  R  W  T  L  K  M  G  Q  P  V  L  I  I  R  V  Q  I  R  H  R  R  R  P  R  A  L  A  Q  G  C  S  M  A  A  E  L  S  S  K  L  L  *  M  V  L  E  *  L  I  A  R  L  G  A  S  L  K  G  *  V  N  T  K  D  F  M  N  V  V  F  I  H  F  I  L  *  M  L  K  M  L  *  T  N  *  L  F  V  C  *  R  L  V  L  L  Q  Y  L  V  V  N  *  N  F  C  S  *  Y  M  L  S  I  S  L  G  I  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79984" stop="80829"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>843</number_coding_nucleotides>
                  <number_encoded_amino_acids>281</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPHEKWKGRKRVLSFSSTDLFHSPAGFVHLSLSYNGTSPEVIEIPAFPILETDASRTDGEARESLPNEFDKIEFPDPKIVNENNLMVSEYFNMPSSNPDSQSSDSLVSSDTENQLSLEVDVHMENVPSEATNFHQYPKRDSPPSSISTIDSPTVLHPASSQSSETQGASKSPEEEYASASKECPTGKNNVGNAESNISESKPPSAFPKPVVIEPEQKVVQQDIVDMYMKSMQQFTESLAKMKLPLDIENGTTSSDNSSSDQTSQTPKSTSSRVFYGSRAFF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77722" stop="77895"/>
                    <exon start="79514" stop="80134"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSDKLPNPLSSFLLILFSANHNYSHPLLRFKSWVFFIFHKRSLFWVDFWLDNQRLSLLVIFVVSFMDSPQSVVSPFKSSSVFADSEKQSNEFFSKNASGLSRGISAHREDVEICNMEDFIGVLDVYVHQARDIHNICIYHKQDVYAKLCLTSDPESAVSTQTINGGGKSPVFNENLKLNVRTIKCSVKCEIWMMSRVRNYLEDQLLGFALVPLSEILMKNGKVEKEFSPFRRLISFTPQQDLCTCPFLTMELHLKLLKFLLFPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="79415" e_stop="81067"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="79415" e_stop="81067" e_length="1653"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79415" stop="80276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79516" stop="80155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79526" stop="80439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79573" stop="79942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79600" stop="80450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79601" stop="80149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79839" stop="80381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79841" stop="80530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79846" stop="80306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79879" stop="80469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79921" stop="80732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79924" stop="80560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79924" stop="80341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79927" stop="80616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79955" stop="80470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80015" stop="80857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80109" stop="81061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80194" stop="80932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80253" stop="81024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80290" stop="81047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80290" stop="80998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80290" stop="80814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80310" stop="80881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80310" stop="80822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80310" stop="80808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80438" stop="81067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80466" stop="80984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80478" stop="80984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234629" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80557" stop="80984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235109" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTAATTTGTGGAGATCATTCAGTTTTTGTTCATAGCTATGTGTTCAGTATTAGCCGATGTGATATCTGATATTGATCTTATCCTTCGATTTTCTTAGGTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGTTGAAGACTTGTTTTACTTCAGTACCTTGTAGTTAATTAGAACTTCTGTTCTTAATATATGCTCAGCATTTCCCTTGGAATAATTTTG</gDNA_template>
            <first_frame> I  *  F  V  E  I  I  Q  F  L  F  I  A  M  C  S  V  L  A  D  V  I  S  D  I  D  L  I  L  R  F  S  *  V  I  F  V  V  S  F  M  D  S  P  Q  S  V  V  S  P  F  K  S  S  S  V  F  A  D  S  E  K  Q  S  N  E  F  F  S  K  N  A  S  G  L  S  R  G  I  S  A  H  R  E  D  V  E  I  C  N  M  E  D  F  I  G  V  L  D  V  Y  V  H  Q  A  R  D  I  H  N  I  C  I  Y  H  K  Q  D  V  Y  A  K  L  C  L  T  S  D  P  E  S  A  V  S  T  Q  T  I  N  G  G  G  K  S  P  V  F  N  E  N  L  K  L  N  V  R  T  I  K  C  S  V  K  C  E  I  W  M  M  S  R  V  R  N  Y  L  E  D  Q  L  L  G  F  A  L  V  P  L  S  E  I  L  M  K  N  G  K  V  E  K  E  F  S  P  F  R  R  L  I  S  F  T  P  Q  Q  D  L  C  T  C  P  F  L  T  M  E  L  H  L  K  L  L  K  F  L  L  F  P  Y  *  K  L  M  H  L  G  Q  T  A  K  H  V  S  P  F  Q  M  S  L  T  K  L  S  S  Q  I  L  R  L  *  M  R  I  I  S  W  S  P  S  T  S  I  C  Q  A  V  I  Q  I  L  K  A  R  I  A  W  S  L  L  I  R  K  T  S  S  V  *  K  S  M  S  I  W  K  M  F  Q  V  R  L  L  I  S  T  N  I  L  S  V  I  R  L  L  A  A  Y  Q  P  L  T  L  Q  Q  F  C  I  P  Q  A  L  S  P  P  R  P  K  E  L  P  S  R  Q  R  K  N  M  H  Q  L  L  K  N  V  P  Q  V  K  I  M  L  E  M  L  R  A  T  Y  R  K  A  S  H  P  V  H  F  Q  S  Q  W  S  L  S  Q  S  R  R  L  C  N  R  I  L  W  I  C  T  *  K  V  C  S  N  L  L  S  H  W  Q  R  *  S  F  R  W  T  L  K  M  G  Q  P  V  L  I  I  R  V  Q  I  R  H  R  R  R  P  R  A  L  A  Q  G  C  S  M  A  A  E  L  S  S  K  L  L  *  M  V  L  E  *  L  I  A  R  L  G  A  S  L  K  G  *  V  N  T  K  D  F  M  N  V  V  F  I  H  F  I  L  *  M  L  K  M  L  *  T  N  *  L  F  V  C  *  R  L  V  L  L  Q  Y  L  V  V  N  *  N  F  C  S  *  Y  M  L  S  I  S  L  G  I  I  L </first_frame>
            <second_frame>  F  N  L  W  R  S  F  S  F  C  S  *  L  C  V  Q  Y  *  P  M  *  Y  L  I  L  I  L  S  F  D  F  L  R  L  Y  L  W  S  A  S  W  I  L  H  S  L  L  C  H  H  L  R  V  P  P  F  S  R  T  L  R  S  K  A  M  N  F  S  A  R  T  L  L  V  Y  P  G  E  F  L  L  I  E  R  M  L  K  S  A  T  W  R  T  S  L  V  F  S  T  C  T  Y  I  R  L  E  I  S  T  T  S  A  F  T  I  N  K  M  F  M  Q  N  F  A  L  Q  V  I  L  K  V  Q  S  P  L  K  P  L  M  A  V  G  K  V  Q  S  S  T  K  I  *  S  S  M  F  V  R  *  N  V  L  L  N  V  R  Y  G  *  *  A  G  *  G  I  I  W  K  T  N  C  W  D  L  H  *  S  P  Y  L  K  S  S  *  K  M  E  R  *  K  K  S  S  L  L  F  V  D  *  S  L  S  L  P  S  R  I  C  A  L  V  P  F  L  Q  W  N  F  T  *  S  Y  *  N  S  C  F  S  H  I  R  N  *  C  I  S  D  R  R  R  S  T  *  V  P  S  K  *  V  *  Q  N  *  V  P  R  S  *  D  C  K  *  E  *  S  H  G  L  R  V  L  Q  Y  A  K  Q  *  S  R  F  S  K  L  G  *  L  G  L  F  *  Y  G  K  P  A  Q  S  R  S  R  C  P  Y  G  K  C  S  K  *  G  Y  *  F  P  P  I  S  *  A  *  F  A  S  *  Q  H  I  N  H  *  L  S  N  S  F  A  S  R  K  L  S  V  L  R  D  P  R  S  F  Q  V  A  R  G  R  I  C  I  S  F  *  R  M  S  H  R  *  K  *  C  W  K  C  *  E  Q  H  I  G  K  Q  A  T  Q  C  I  S  K  A  S  G  H  *  A  R  A  E  G  C  A  T  G  Y  C  G  Y  V  H  E  K  Y  A  A  I  Y  *  V  I  G  K  D  E  A  S  A  G  H  *  K  W  D  N  Q  F  *  *  F  E  F  R  S  D  I  A  D  A  Q  E  H  *  L  K  G  V  L  W  Q  Q  S  F  L  L  S  F  C  E  W  F  S  N  N  L  *  R  D  *  E  Q  V  *  K  D  K  *  T  L  R  I  L  *  M  W  C  L  S  I  L  S  C  E  C  L  K  C  S  E  L  I  N  F  L  S  V  E  D  L  F  Y  F  S  T  L  *  L  I  R  T  S  V  L  N  I  C  S  A  F  P  L  E  *  F   </second_frame>
            <third_frame>   L  I  C  G  D  H  S  V  F  V  H  S  Y  V  F  S  I  S  R  C  D  I  *  Y  *  S  Y  P  S  I  F  L  G  Y  I  C  G  Q  L  H  G  F  S  T  V  C  C  V  T  I  *  E  F  L  R  F  R  G  L  *  E  A  K  Q  *  I  F  Q  Q  E  R  F  W  S  I  P  G  N  F  C  S  *  R  G  C  *  N  L  Q  H  G  G  L  H  W  C  S  R  R  V  R  T  S  G  *  R  Y  P  Q  H  L  H  L  P  *  T  R  C  L  C  K  T  L  P  Y  K  *  S  *  K  C  S  L  H  S  N  H  *  W  R  W  E  K  S  S  L  Q  R  K  S  K  A  Q  C  S  Y  D  K  M  F  C  *  M  *  D  M  D  D  E  Q  G  E  E  L  F  G  R  P  I  V  G  I  C  T  S  P  L  I  *  N  P  H  E  K  W  K  G  R  K  R  V  L  S  F  S  S  T  D  L  F  H  S  P  A  G  F  V  H  L  S  L  S  Y  N  G  T  S  P  E  V  I  E  I  P  A  F  P  I  L  E  T  D  A  S  R  T  D  G  E  A  R  E  S  L  P  N  E  F  D  K  I  E  F  P  D  P  K  I  V  N  E  N  N  L  M  V  S  E  Y  F  N  M  P  S  S  N  P  D  S  Q  S  S  D  S  L  V  S  S  D  T  E  N  Q  L  S  L  E  V  D  V  H  M  E  N  V  P  S  E  A  T  N  F  H  Q  Y  P  K  R  D  S  P  P  S  S  I  S  T  I  D  S  P  T  V  L  H  P  A  S  S  Q  S  S  E  T  Q  G  A  S  K  S  P  E  E  E  Y  A  S  A  S  K  E  C  P  T  G  K  N  N  V  G  N  A  E  S  N  I  S  E  S  K  P  P  S  A  F  P  K  P  V  V  I  E  P  E  Q  K  V  V  Q  Q  D  I  V  D  M  Y  M  K  S  M  Q  Q  F  T  E  S  L  A  K  M  K  L  P  L  D  I  E  N  G  T  T  S  S  D  N  S  S  S  D  Q  T  S  Q  T  P  K  S  T  S  S  R  V  F  Y  G  S  R  A  F  F  *  A  F  V  N  G  S  R  I  T  Y  S  A  I  R  S  K  S  K  R  I  S  E  H  *  G  F  Y  E  C  G  V  Y  P  F  Y  L  V  N  A  *  N  A  L  N  *  L  T  F  C  L  L  K  T  C  F  T  S  V  P  C  S  *  L  E  L  L  F  L  I  Y  A  Q  H  F  P  W  N  N  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79984" stop="80829"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>843</number_coding_nucleotides>
                  <number_encoded_amino_acids>281</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPHEKWKGRKRVLSFSSTDLFHSPAGFVHLSLSYNGTSPEVIEIPAFPILETDASRTDGEARESLPNEFDKIEFPDPKIVNENNLMVSEYFNMPSSNPDSQSSDSLVSSDTENQLSLEVDVHMENVPSEATNFHQYPKRDSPPSSISTIDSPTVLHPASSQSSETQGASKSPEEEYASASKECPTGKNNVGNAESNISESKPPSAFPKPVVIEPEQKVVQQDIVDMYMKSMQQFTESLAKMKLPLDIENGTTSSDNSSSDQTSQTPKSTSSRVFYGSRAFF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79479" stop="79868"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLILILSFDFLRLYLWSASWILHSLLCHHLRVPPFSRTLRSKAMNFSARTLLVYPGEFLLIERMLKSATWRTSLVFSTCTYIRLEISTTSAFTINKMFMQNFALQVILKVQSPLKPLMAVGKVQSSTKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="77757" e_stop="77900"/>
            <exon e_start="78043" e_stop="78119"/>
            <exon e_start="79514" e_stop="81067"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="0.826"/>
          <exon-intron don_prob="0.000" acc_prob="0.983" e_score="0.883"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.826">
            <gDNA_exon_boundary e_start="77757" e_stop="77900" e_length="144"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="77901" i_stop="78042" i_length="142"/>
          </intron>
          <exon e_serial="2" e_score="0.883">
            <gDNA_exon_boundary e_start="78043" e_stop="78119" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="78120" i_stop="79513" i_length="1394"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="79514" e_stop="81067" e_length="1554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77757" stop="77900"/>
              <exon start="78043" stop="78119"/>
              <exon start="79514" stop="80005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79516" stop="80155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79526" stop="80439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79573" stop="79942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79600" stop="80450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79601" stop="80149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79839" stop="80381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79841" stop="80530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79846" stop="80306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79879" stop="80469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79921" stop="80732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79924" stop="80560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79924" stop="80341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79927" stop="80616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79955" stop="80470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80015" stop="80857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80109" stop="81061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80194" stop="80932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80253" stop="81024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80290" stop="81047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80290" stop="80998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80290" stop="80814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80310" stop="80881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80310" stop="80822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80310" stop="80808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80438" stop="81067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80466" stop="80984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80478" stop="80984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234629" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80557" stop="80984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235109" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGTTGATTTTATTCTCTGCAAATCACAATTATTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTGGTAAA : GGGAAAAGGGGTTAAAGATTGTAGCTTTGTTCATGTAGATTTGGTGCAGGATTTAAGTTGAATAGTTAAGGGGAAAG : GTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGTTGAAGACTTGTTTTACTTCAGTACCTTGTAGTTAATTAGAACTTCTGTTCTTAATATATGCTCAGCATTTCCCTTGGAATAATTTTG</gDNA_template>
            <first_frame> L  V  D  F  I  L  C  K  S  Q  L  F  S  S  F  A  S  F  *  E  L  G  F  L  H  F  P  *  K  I  T  L  L  G  R  F  L  A  *  *  S  E  T  Q  S  V  G  K  :  G  K  R  G  *  R  L  *  L  C  S  C  R  F  G  A  G  F  K  L  N  S  *  G  E  R :   L  Y  L  W  S  A  S  W  I  L  H  S  L  L  C  H  H  L  R  V  P  P  F  S  R  T  L  R  S  K  A  M  N  F  S  A  R  T  L  L  V  Y  P  G  E  F  L  L  I  E  R  M  L  K  S  A  T  W  R  T  S  L  V  F  S  T  C  T  Y  I  R  L  E  I  S  T  T  S  A  F  T  I  N  K  M  F  M  Q  N  F  A  L  Q  V  I  L  K  V  Q  S  P  L  K  P  L  M  A  V  G  K  V  Q  S  S  T  K  I  *  S  S  M  F  V  R  *  N  V  L  L  N  V  R  Y  G  *  *  A  G  *  G  I  I  W  K  T  N  C  W  D  L  H  *  S  P  Y  L  K  S  S  *  K  M  E  R  *  K  K  S  S  L  L  F  V  D  *  S  L  S  L  P  S  R  I  C  A  L  V  P  F  L  Q  W  N  F  T  *  S  Y  *  N  S  C  F  S  H  I  R  N  *  C  I  S  D  R  R  R  S  T  *  V  P  S  K  *  V  *  Q  N  *  V  P  R  S  *  D  C  K  *  E  *  S  H  G  L  R  V  L  Q  Y  A  K  Q  *  S  R  F  S  K  L  G  *  L  G  L  F  *  Y  G  K  P  A  Q  S  R  S  R  C  P  Y  G  K  C  S  K  *  G  Y  *  F  P  P  I  S  *  A  *  F  A  S  *  Q  H  I  N  H  *  L  S  N  S  F  A  S  R  K  L  S  V  L  R  D  P  R  S  F  Q  V  A  R  G  R  I  C  I  S  F  *  R  M  S  H  R  *  K  *  C  W  K  C  *  E  Q  H  I  G  K  Q  A  T  Q  C  I  S  K  A  S  G  H  *  A  R  A  E  G  C  A  T  G  Y  C  G  Y  V  H  E  K  Y  A  A  I  Y  *  V  I  G  K  D  E  A  S  A  G  H  *  K  W  D  N  Q  F  *  *  F  E  F  R  S  D  I  A  D  A  Q  E  H  *  L  K  G  V  L  W  Q  Q  S  F  L  L  S  F  C  E  W  F  S  N  N  L  *  R  D  *  E  Q  V  *  K  D  K  *  T  L  R  I  L  *  M  W  C  L  S  I  L  S  C  E  C  L  K  C  S  E  L  I  N  F  L  S  V  E  D  L  F  Y  F  S  T  L  *  L  I  R  T  S  V  L  N  I  C  S  A  F  P  L  E  *  F   </first_frame>
            <second_frame>  L  L  I  L  F  S  A  N  H  N  Y  S  H  P  L  L  R  F  K  S  W  V  F  F  I  F  H  K  R  S  L  F  W  V  D  F  W  L  D  N  Q  R  L  S  L  L  V  K :   G  K  G  V  K  D  C  S  F  V  H  V  D  L  V  Q  D  L  S  *  I  V  K  G  K   : G  Y  I  C  G  Q  L  H  G  F  S  T  V  C  C  V  T  I  *  E  F  L  R  F  R  G  L  *  E  A  K  Q  *  I  F  Q  Q  E  R  F  W  S  I  P  G  N  F  C  S  *  R  G  C  *  N  L  Q  H  G  G  L  H  W  C  S  R  R  V  R  T  S  G  *  R  Y  P  Q  H  L  H  L  P  *  T  R  C  L  C  K  T  L  P  Y  K  *  S  *  K  C  S  L  H  S  N  H  *  W  R  W  E  K  S  S  L  Q  R  K  S  K  A  Q  C  S  Y  D  K  M  F  C  *  M  *  D  M  D  D  E  Q  G  E  E  L  F  G  R  P  I  V  G  I  C  T  S  P  L  I  *  N  P  H  E  K  W  K  G  R  K  R  V  L  S  F  S  S  T  D  L  F  H  S  P  A  G  F  V  H  L  S  L  S  Y  N  G  T  S  P  E  V  I  E  I  P  A  F  P  I  L  E  T  D  A  S  R  T  D  G  E  A  R  E  S  L  P  N  E  F  D  K  I  E  F  P  D  P  K  I  V  N  E  N  N  L  M  V  S  E  Y  F  N  M  P  S  S  N  P  D  S  Q  S  S  D  S  L  V  S  S  D  T  E  N  Q  L  S  L  E  V  D  V  H  M  E  N  V  P  S  E  A  T  N  F  H  Q  Y  P  K  R  D  S  P  P  S  S  I  S  T  I  D  S  P  T  V  L  H  P  A  S  S  Q  S  S  E  T  Q  G  A  S  K  S  P  E  E  E  Y  A  S  A  S  K  E  C  P  T  G  K  N  N  V  G  N  A  E  S  N  I  S  E  S  K  P  P  S  A  F  P  K  P  V  V  I  E  P  E  Q  K  V  V  Q  Q  D  I  V  D  M  Y  M  K  S  M  Q  Q  F  T  E  S  L  A  K  M  K  L  P  L  D  I  E  N  G  T  T  S  S  D  N  S  S  S  D  Q  T  S  Q  T  P  K  S  T  S  S  R  V  F  Y  G  S  R  A  F  F  *  A  F  V  N  G  S  R  I  T  Y  S  A  I  R  S  K  S  K  R  I  S  E  H  *  G  F  Y  E  C  G  V  Y  P  F  Y  L  V  N  A  *  N  A  L  N  *  L  T  F  C  L  L  K  T  C  F  T  S  V  P  C  S  *  L  E  L  L  F  L  I  Y  A  Q  H  F  P  W  N  N  F  </second_frame>
            <third_frame>   C  *  F  Y  S  L  Q  I  T  I  I  L  I  L  C  F  V  L  R  V  G  F  S  S  F  S  I  K  D  H  S  F  G  *  I  F  G  L  I  I  R  D  S  V  C  W  *   : R  E  K  G  L  K  I  V  A  L  F  M  *  I  W  C  R  I  *  V  E  *  L  R  G  K  :  V  I  F  V  V  S  F  M  D  S  P  Q  S  V  V  S  P  F  K  S  S  S  V  F  A  D  S  E  K  Q  S  N  E  F  F  S  K  N  A  S  G  L  S  R  G  I  S  A  H  R  E  D  V  E  I  C  N  M  E  D  F  I  G  V  L  D  V  Y  V  H  Q  A  R  D  I  H  N  I  C  I  Y  H  K  Q  D  V  Y  A  K  L  C  L  T  S  D  P  E  S  A  V  S  T  Q  T  I  N  G  G  G  K  S  P  V  F  N  E  N  L  K  L  N  V  R  T  I  K  C  S  V  K  C  E  I  W  M  M  S  R  V  R  N  Y  L  E  D  Q  L  L  G  F  A  L  V  P  L  S  E  I  L  M  K  N  G  K  V  E  K  E  F  S  P  F  R  R  L  I  S  F  T  P  Q  Q  D  L  C  T  C  P  F  L  T  M  E  L  H  L  K  L  L  K  F  L  L  F  P  Y  *  K  L  M  H  L  G  Q  T  A  K  H  V  S  P  F  Q  M  S  L  T  K  L  S  S  Q  I  L  R  L  *  M  R  I  I  S  W  S  P  S  T  S  I  C  Q  A  V  I  Q  I  L  K  A  R  I  A  W  S  L  L  I  R  K  T  S  S  V  *  K  S  M  S  I  W  K  M  F  Q  V  R  L  L  I  S  T  N  I  L  S  V  I  R  L  L  A  A  Y  Q  P  L  T  L  Q  Q  F  C  I  P  Q  A  L  S  P  P  R  P  K  E  L  P  S  R  Q  R  K  N  M  H  Q  L  L  K  N  V  P  Q  V  K  I  M  L  E  M  L  R  A  T  Y  R  K  A  S  H  P  V  H  F  Q  S  Q  W  S  L  S  Q  S  R  R  L  C  N  R  I  L  W  I  C  T  *  K  V  C  S  N  L  L  S  H  W  Q  R  *  S  F  R  W  T  L  K  M  G  Q  P  V  L  I  I  R  V  Q  I  R  H  R  R  R  P  R  A  L  A  Q  G  C  S  M  A  A  E  L  S  S  K  L  L  *  M  V  L  E  *  L  I  A  R  L  G  A  S  L  K  G  *  V  N  T  K  D  F  M  N  V  V  F  I  H  F  I  L  *  M  L  K  M  L  *  T  N  *  L  F  V  C  *  R  L  V  L  L  Q  Y  L  V  V  N  *  N  F  C  S  *  Y  M  L  S  I  S  L  G  I  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79984" stop="80829"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>843</number_coding_nucleotides>
                  <number_encoded_amino_acids>281</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPHEKWKGRKRVLSFSSTDLFHSPAGFVHLSLSYNGTSPEVIEIPAFPILETDASRTDGEARESLPNEFDKIEFPDPKIVNENNLMVSEYFNMPSSNPDSQSSDSLVSSDTENQLSLEVDVHMENVPSEATNFHQYPKRDSPPSSISTIDSPTVLHPASSQSSETQGASKSPEEEYASASKECPTGKNNVGNAESNISESKPPSAFPKPVVIEPEQKVVQQDIVDMYMKSMQQFTESLAKMKLPLDIENGTTSSDNSSSDQTSQTPKSTSSRVFYGSRAFF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78112" stop="78119"/>
                    <exon start="79514" stop="79868"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GERLYLWSASWILHSLLCHHLRVPPFSRTLRSKAMNFSARTLLVYPGEFLLIERMLKSATWRTSLVFSTCTYIRLEISTTSAFTINKMFMQNFALQVILKVQSPLKPLMAVGKVQSSTKI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="4" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77758" stop="77900"/>
                    <exon start="78043" stop="78103"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLILFSANHNYSHPLLRFKSWVFFIFHKRSLFWVDFWLDNQRLSLLVKGKGVKDCSFVHVDLVQDLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="88405" PGL_stop="86034"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88405" e_stop="88332"/>
            <exon e_start="88041" e_stop="88036"/>
            <exon e_start="87905" e_stop="87411"/>
            <exon e_start="86662" e_stop="86038"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.000" e_score="0.905"/>
          <exon-intron don_prob="0.900" acc_prob="0.993" e_score="0.500"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.967"/>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="88405" e_stop="88332" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.000">
            <gDNA_intron_boundary i_start="88331" i_stop="88042" i_length="290"/>
          </intron>
          <exon e_serial="2" e_score="0.500">
            <gDNA_exon_boundary e_start="88041" e_stop="88036" e_length="6"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.993">
            <gDNA_intron_boundary i_start="88035" i_stop="87906" i_length="130"/>
          </intron>
          <exon e_serial="3" e_score="0.967">
            <gDNA_exon_boundary e_start="87905" e_stop="87411" e_length="495"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="87410" i_stop="86663" i_length="748"/>
          </intron>
          <exon e_serial="4" e_score="0.934">
            <gDNA_exon_boundary e_start="86662" e_stop="86038" e_length="625"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88405" stop="88332"/>
              <exon start="88041" stop="88036"/>
              <exon start="87905" stop="87414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88405" stop="88332"/>
              <exon start="88041" stop="88036"/>
              <exon start="87905" stop="87574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87431" stop="87411"/>
              <exon start="86662" stop="86038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423062" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGAGTTCAGCTTTTTTGCTTCTCAGTTCATTGAAGAAGAAGACAAGTTCACGTAACATTCGCACTACATATG : TCAAAA : GTGCAGAGCGTGGATCCGGATCGGGAATCGGAGCCGTTCATTGAACTGGATCCGACGGGTAGATATGGGCGGTACGACGAGCTATTAGGTTATGGAGCAGTGAAGAAGGTGTACAGAGCATTTGATCAGGAAGAAGGGATTGAAGTAGCCTGGAACCAAGTGAAATTGCGTAATTTCATGGATGATCAACAGGTGATTGATAGGCTGTATTCGGAGGTTCGGCTATTGAAAACTCTAAAGCATAAGAATATAATTGCATTGTACTCTGTTTGGAGGGATGAAAATCGCAACACGTTGAATTTCATAACTGAGGTTTGTACCTCGGGGAATTTGAGAGAGTATAGGAAGAAACACAAACACGTATCGATGAAGGCAGTGAAGAAGTGGTCTAAGCAGATCCTTAAGGGATTGAACTATTTGCATACTCATGAACCTTGTGTTATCCACAGGGATCTCAATTGCAGTAATGTCTTCATTAATGGCAATATTGGTCAG : GTTAAGATTGGTGATTTGGGTTTTGCAACTATAGTAGGGAAGAGTCATTCAGCACATTCGGTTCTTGGAACCCCAGAGTTCATGGCACCGGAGTTGTATGATGAGGATTATACCGAGCTGATTGATATCTACTCGTTTGGGATGTGTGTTTTGGAGATGGTGACGTTGGAACTACCTTATAGTGAGTGTGATAACGTGGTGAAGATATACAAGAAGGTAATATCCGGAGTGAGGCCCAAGGCCATGGACAAGGTTAAAGATCTCGAGGTCAAGAAGTTCATTGAGAAGTGTCTTGCTCAGCCTAGGGTTAGACCCTCTGCTTCTGAACTCCTTCAAGACCCTTTCTTTAATGATATTAATGATGATGACGAAAACGACGATGAAGAGTATACTAGTAACAACTATTGGCATGCTTAAGTCAGCCATAGCTATTATTTGCTAGTTGCTATTATATTAGTTAGTTGTATTAGGTTTTGTTGTGATATTTTTGGTGTTGATTTGTTACTTATAGTGGTTTTTGCCTTTTCTTCCAAAAAGAAGAAAAGAAAATGGTTTTGCTTTTTATGAAACTATTGTAAAAGAAAAAACAATAGAAAAAAGAGTGTATTTTTATTAAGAAATTTGT</gDNA_template>
            <first_frame> K  E  F  S  F  F  A  S  Q  F  I  E  E  E  D  K  F  T  *  H  S  H  Y  I  C :   Q  K :   C  R  A  W  I  R  I  G  N  R  S  R  S  L  N  W  I  R  R  V  D  M  G  G  T  T  S  Y  *  V  M  E  Q  *  R  R  C  T  E  H  L  I  R  K  K  G  L  K  *  P  G  T  K  *  N  C  V  I  S  W  M  I  N  R  *  L  I  G  C  I  R  R  F  G  Y  *  K  L  *  S  I  R  I  *  L  H  C  T  L  F  G  G  M  K  I  A  T  R  *  I  S  *  L  R  F  V  P  R  G  I  *  E  S  I  G  R  N  T  N  T  Y  R  *  R  Q  *  R  S  G  L  S  R  S  L  R  D  *  T  I  C  I  L  M  N  L  V  L  S  T  G  I  S  I  A  V  M  S  S  L  M  A  I  L  V  R :   L  R  L  V  I  W  V  L  Q  L  *  *  G  R  V  I  Q  H  I  R  F  L  E  P  Q  S  S  W  H  R  S  C  M  M  R  I  I  P  S  *  L  I  S  T  R  L  G  C  V  F  W  R  W  *  R  W  N  Y  L  I  V  S  V  I  T  W  *  R  Y  T  R  R  *  Y  P  E  *  G  P  R  P  W  T  R  L  K  I  S  R  S  R  S  S  L  R  S  V  L  L  S  L  G  L  D  P  L  L  L  N  S  F  K  T  L  S  L  M  I  L  M  M  M  T  K  T  T  M  K  S  I  L  V  T  T  I  G  M  L  K  S  A  I  A  I  I  C  *  L  L  L  Y  *  L  V  V  L  G  F  V  V  I  F  L  V  L  I  C  Y  L  *  W  F  L  P  F  L  P  K  R  R  K  E  N  G  F  A  F  Y  E  T  I  V  K  E  K  T  I  E  K  R  V  Y  F  Y  *  E  I  C </first_frame>
            <second_frame>  K  S  S  A  F  L  L  L  S  S  L  K  K  K  T  S  S  R  N  I  R  T  T  Y   : V  K   : S  A  E  R  G  S  G  S  G  I  G  A  V  H  *  T  G  S  D  G  *  I  W  A  V  R  R  A  I  R  L  W  S  S  E  E  G  V  Q  S  I  *  S  G  R  R  D  *  S  S  L  E  P  S  E  I  A  *  F  H  G  *  S  T  G  D  *  *  A  V  F  G  G  S  A  I  E  N  S  K  A  *  E  Y  N  C  I  V  L  C  L  E  G  *  K  S  Q  H  V  E  F  H  N  *  G  L  Y  L  G  E  F  E  R  V  *  E  E  T  Q  T  R  I  D  E  G  S  E  E  V  V  *  A  D  P  *  G  I  E  L  F  A  Y  S  *  T  L  C  Y  P  Q  G  S  Q  L  Q  *  C  L  H  *  W  Q  Y  W  S   : G  *  D  W  *  F  G  F  C  N  Y  S  R  E  E  S  F  S  T  F  G  S  W  N  P  R  V  H  G  T  G  V  V  *  *  G  L  Y  R  A  D  *  Y  L  L  V  W  D  V  C  F  G  D  G  D  V  G  T  T  L  *  *  V  *  *  R  G  E  D  I  Q  E  G  N  I  R  S  E  A  Q  G  H  G  Q  G  *  R  S  R  G  Q  E  V  H  *  E  V  S  C  S  A  *  G  *  T  L  C  F  *  T  P  S  R  P  F  L  *  *  Y  *  *  *  *  R  K  R  R  *  R  V  Y  *  *  Q  L  L  A  C  L  S  Q  P  *  L  L  F  A  S  C  Y  Y  I  S  *  L  Y  *  V  L  L  *  Y  F  W  C  *  F  V  T  Y  S  G  F  C  L  F  F  Q  K  E  E  K  K  M  V  L  L  F  M  K  L  L  *  K  K  K  Q  *  K  K  E  C  I  F  I  K  K  F   </second_frame>
            <third_frame>   R  V  Q  L  F  C  F  S  V  H  *  R  R  R  Q  V  H  V  T  F  A  L  H  M  :  S  K  :  V  Q  S  V  D  P  D  R  E  S  E  P  F  I  E  L  D  P  T  G  R  Y  G  R  Y  D  E  L  L  G  Y  G  A  V  K  K  V  Y  R  A  F  D  Q  E  E  G  I  E  V  A  W  N  Q  V  K  L  R  N  F  M  D  D  Q  Q  V  I  D  R  L  Y  S  E  V  R  L  L  K  T  L  K  H  K  N  I  I  A  L  Y  S  V  W  R  D  E  N  R  N  T  L  N  F  I  T  E  V  C  T  S  G  N  L  R  E  Y  R  K  K  H  K  H  V  S  M  K  A  V  K  K  W  S  K  Q  I  L  K  G  L  N  Y  L  H  T  H  E  P  C  V  I  H  R  D  L  N  C  S  N  V  F  I  N  G  N  I  G  Q  :  V  K  I  G  D  L  G  F  A  T  I  V  G  K  S  H  S  A  H  S  V  L  G  T  P  E  F  M  A  P  E  L  Y  D  E  D  Y  T  E  L  I  D  I  Y  S  F  G  M  C  V  L  E  M  V  T  L  E  L  P  Y  S  E  C  D  N  V  V  K  I  Y  K  K  V  I  S  G  V  R  P  K  A  M  D  K  V  K  D  L  E  V  K  K  F  I  E  K  C  L  A  Q  P  R  V  R  P  S  A  S  E  L  L  Q  D  P  F  F  N  D  I  N  D  D  D  E  N  D  D  E  E  Y  T  S  N  N  Y  W  H  A  *  V  S  H  S  Y  Y  L  L  V  A  I  I  L  V  S  C  I  R  F  C  C  D  I  F  G  V  D  L  L  L  I  V  V  F  A  F  S  S  K  K  K  K  R  K  W  F  C  F  L  *  N  Y  C  K  R  K  N  N  R  K  K  S  V  F  L  L  R  N  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88370" stop="88332"/>
                    <exon start="88041" stop="88036"/>
                    <exon start="87905" stop="87411"/>
                    <exon start="86662" stop="86246"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>954</number_coding_nucleotides>
                  <number_encoded_amino_acids>318</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRRQVHVTFALHMSKVQSVDPDRESEPFIELDPTGRYGRYDELLGYGAVKKVYRAFDQEEGIEVAWNQVKLRNFMDDQQVIDRLYSEVRLLKTLKHKNIIALYSVWRDENRNTLNFITEVCTSGNLREYRKKHKHVSMKAVKKWSKQILKGLNYLHTHEPCVIHRDLNCSNVFINGNIGQVKIGDLGFATIVGKSHSAHSVLGTPEFMAPELYDEDYTELIDIYSFGMCVLEMVTLELPYSECDNVVKIYKKVISGVRPKAMDKVKDLEVKKFIEKCLAQPRVRPSASELLQDPFFNDINDDDENDDEEYTSNNYWHA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="86672" e_stop="86034"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="86672" e_stop="86034" e_length="639"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86672" stop="86034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343660" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTGATATAGGTTAAGATTGGTGATTTGGGTTTTGCAACTATAGTAGGGAAGAGTCATTCAGCACATTCGGTTCTTGGAACCCCAGAGTTCATGGCACCGGAGTTGTATGATGAGGATTATACCGAGCTGATTGATATCTACTCGTTTGGGATGTGTGTTTTGGAGATGGTGACGTTGGAACTACCTTATAGTGAGTGTGATAACGTGGTGAAGATATACAAGAAGGTAATATCCGGAGTGAGGCCCAAGGCCATGGACAAGGTTAAAGATCTCGAGGTCAAGAAGTTCATTGAGAAGTGTCTTGCTCAGCCTAGGGTTAGACCCTCTGCTTCTGAACTCCTTCAAGACCCTTTCTTTAATGATATTAATGATGATGACGAAAACGACGATGAAGAGTATACTAGTAACAACTATTGGCATGCTTAAGTCAGCCATAGCTATTATTTGCTAGTTGCTATTATATTAGTTAGTTGTATTAGGTTTTGTTGTGATATTTTTGGTGTTGATTTGTTACTTATAGTGGTTTTTGCCTTTTCTTCCAAAAAGAAGAAAAGAAAATGGTTTTGCTTTTTATGAAACTATTGTAAAAGAAAAAACAATAGAAAAAAGAGTGTATTTTTATTAAGAAATTTGTACAT</gDNA_template>
            <first_frame> C  D  I  G  *  D  W  *  F  G  F  C  N  Y  S  R  E  E  S  F  S  T  F  G  S  W  N  P  R  V  H  G  T  G  V  V  *  *  G  L  Y  R  A  D  *  Y  L  L  V  W  D  V  C  F  G  D  G  D  V  G  T  T  L  *  *  V  *  *  R  G  E  D  I  Q  E  G  N  I  R  S  E  A  Q  G  H  G  Q  G  *  R  S  R  G  Q  E  V  H  *  E  V  S  C  S  A  *  G  *  T  L  C  F  *  T  P  S  R  P  F  L  *  *  Y  *  *  *  *  R  K  R  R  *  R  V  Y  *  *  Q  L  L  A  C  L  S  Q  P  *  L  L  F  A  S  C  Y  Y  I  S  *  L  Y  *  V  L  L  *  Y  F  W  C  *  F  V  T  Y  S  G  F  C  L  F  F  Q  K  E  E  K  K  M  V  L  L  F  M  K  L  L  *  K  K  K  Q  *  K  K  E  C  I  F  I  K  K  F  V  H </first_frame>
            <second_frame>  V  I  *  V  K  I  G  D  L  G  F  A  T  I  V  G  K  S  H  S  A  H  S  V  L  G  T  P  E  F  M  A  P  E  L  Y  D  E  D  Y  T  E  L  I  D  I  Y  S  F  G  M  C  V  L  E  M  V  T  L  E  L  P  Y  S  E  C  D  N  V  V  K  I  Y  K  K  V  I  S  G  V  R  P  K  A  M  D  K  V  K  D  L  E  V  K  K  F  I  E  K  C  L  A  Q  P  R  V  R  P  S  A  S  E  L  L  Q  D  P  F  F  N  D  I  N  D  D  D  E  N  D  D  E  E  Y  T  S  N  N  Y  W  H  A  *  V  S  H  S  Y  Y  L  L  V  A  I  I  L  V  S  C  I  R  F  C  C  D  I  F  G  V  D  L  L  L  I  V  V  F  A  F  S  S  K  K  K  K  R  K  W  F  C  F  L  *  N  Y  C  K  R  K  N  N  R  K  K  S  V  F  L  L  R  N  L  Y   </second_frame>
            <third_frame>   *  Y  R  L  R  L  V  I  W  V  L  Q  L  *  *  G  R  V  I  Q  H  I  R  F  L  E  P  Q  S  S  W  H  R  S  C  M  M  R  I  I  P  S  *  L  I  S  T  R  L  G  C  V  F  W  R  W  *  R  W  N  Y  L  I  V  S  V  I  T  W  *  R  Y  T  R  R  *  Y  P  E  *  G  P  R  P  W  T  R  L  K  I  S  R  S  R  S  S  L  R  S  V  L  L  S  L  G  L  D  P  L  L  L  N  S  F  K  T  L  S  L  M  I  L  M  M  M  T  K  T  T  M  K  S  I  L  V  T  T  I  G  M  L  K  S  A  I  A  I  I  C  *  L  L  L  Y  *  L  V  V  L  G  F  V  V  I  F  L  V  L  I  C  Y  L  *  W  F  L  P  F  L  P  K  R  R  K  E  N  G  F  A  F  Y  E  T  I  V  K  E  K  T  I  E  K  R  V  Y  F  Y  *  E  I  C  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86662" stop="86246"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKIGDLGFATIVGKSHSAHSVLGTPEFMAPELYDEDYTELIDIYSFGMCVLEMVTLELPYSECDNVVKIYKKVISGVRPKAMDKVKDLEVKKFIEKCLAQPRVRPSASELLQDPFFNDINDDDENDDEEYTSNNYWHA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="91835" PGL_stop="94773"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91835" e_stop="92085"/>
            <exon e_start="93287" e_stop="93481"/>
            <exon e_start="94588" e_stop="94773"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.982"/>
          <exon-intron don_prob="0.900" acc_prob="0.944" e_score="0.985"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="91835" e_stop="92085" e_length="251"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="92086" i_stop="93286" i_length="1201"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="93287" e_stop="93481" e_length="195"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.944">
            <gDNA_intron_boundary i_start="93482" i_stop="94587" i_length="1106"/>
          </intron>
          <exon e_serial="3" e_score="0.968">
            <gDNA_exon_boundary e_start="94588" e_stop="94773" e_length="186"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91835" stop="92085"/>
              <exon start="93287" stop="93481"/>
              <exon start="94588" stop="94773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91858" stop="92085"/>
              <exon start="93287" stop="93481"/>
              <exon start="94588" stop="94616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611701" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGAATCGTCAATGGAAGACTCTCACTCTCAGCAGCAGCAGCTGCACTCTACTTCCGAGCAACAACTCAGAGATGGAACAAACTCCTCCGGAGGCTTCCGTCACAACGCCGCTGGATCGAACGGCGGTGCTAAGTACAAGCTCATGACTCCTGCTATGCTTCCGATCTCTAGGTCCGCCTGTATCACCATACCTCCCGGTCTCAGTCCTTCCTCCTTCCTCGAATCTCCTGTTCTCCTTTCTAACATCAAA : GCTGAGCCATCTCCGACTACAGGTTCCTTCTCCAAATTTCAAACAGTGCAAGGCTCTGGTGGGGCTGCTGCATTCTTATTGACAAGAGGTTATGCTAGTGGCAATACATACACTGAAAGAAAAGCAAGCTGCTTTGAATACAAATATGCCGGTGGATCTAGTTCTACATCAGGATCATTAGCAACTGAACATGTG : ATTTCTACAGGTCTCAACCAACAACACAATGAGCCATTGGAAGAAGTTCAAGATCAATGTTATCCTCAATTGTTAGTACCTTCATCTCTAGCTAAACACGAGATGGAAACATCAAAAGAACTGAGTTTATCTGCACCTATTAATGTTGATGCTTCATCAAAAGAAGAGAGTCTATATGAACCTATT</gDNA_template>
            <first_frame> R  N  R  Q  W  K  T  L  T  L  S  S  S  S  C  T  L  L  P  S  N  N  S  E  M  E  Q  T  P  P  E  A  S  V  T  T  P  L  D  R  T  A  V  L  S  T  S  S  *  L  L  L  C  F  R  S  L  G  P  P  V  S  P  Y  L  P  V  S  V  L  P  P  S  S  N  L  L  F  S  F  L  T  S  K :   L  S  H  L  R  L  Q  V  P  S  P  N  F  K  Q  C  K  A  L  V  G  L  L  H  S  Y  *  Q  E  V  M  L  V  A  I  H  T  L  K  E  K  Q  A  A  L  N  T  N  M  P  V  D  L  V  L  H  Q  D  H  *  Q  L  N  M  * :   F  L  Q  V  S  T  N  N  T  M  S  H  W  K  K  F  K  I  N  V  I  L  N  C  *  Y  L  H  L  *  L  N  T  R  W  K  H  Q  K  N  *  V  Y  L  H  L  L  M  L  M  L  H  Q  K  K  R  V  Y  M  N  L   </first_frame>
            <second_frame>  G  I  V  N  G  R  L  S  L  S  A  A  A  A  A  L  Y  F  R  A  T  T  Q  R  W  N  K  L  L  R  R  L  P  S  Q  R  R  W  I  E  R  R  C  *  V  Q  A  H  D  S  C  Y  A  S  D  L  *  V  R  L  Y  H  H  T  S  R  S  Q  S  F  L  L  P  R  I  S  C  S  P  F  *  H  Q   : S  *  A  I  S  D  Y  R  F  L  L  Q  I  S  N  S  A  R  L  W  W  G  C  C  I  L  I  D  K  R  L  C  *  W  Q  Y  I  H  *  K  K  S  K  L  L  *  I  Q  I  C  R  W  I  *  F  Y  I  R  I  I  S  N  *  T  C   : D  F  Y  R  S  Q  P  T  T  Q  *  A  I  G  R  S  S  R  S  M  L  S  S  I  V  S  T  F  I  S  S  *  T  R  D  G  N  I  K  R  T  E  F  I  C  T  Y  *  C  *  C  F  I  K  R  R  E  S  I  *  T  Y  </second_frame>
            <third_frame>   E  S  S  M  E  D  S  H  S  Q  Q  Q  Q  L  H  S  T  S  E  Q  Q  L  R  D  G  T  N  S  S  G  G  F  R  H  N  A  A  G  S  N  G  G  A  K  Y  K  L  M  T  P  A  M  L  P  I  S  R  S  A  C  I  T  I  P  P  G  L  S  P  S  S  F  L  E  S  P  V  L  L  S  N  I  K  :  A  E  P  S  P  T  T  G  S  F  S  K  F  Q  T  V  Q  G  S  G  G  A  A  A  F  L  L  T  R  G  Y  A  S  G  N  T  Y  T  E  R  K  A  S  C  F  E  Y  K  Y  A  G  G  S  S  S  T  S  G  S  L  A  T  E  H  V  :  I  S  T  G  L  N  Q  Q  H  N  E  P  L  E  E  V  Q  D  Q  C  Y  P  Q  L  L  V  P  S  S  L  A  K  H  E  M  E  T  S  K  E  L  S  L  S  A  P  I  N  V  D  A  S  S  K  E  E  S  L  Y  E  P  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91837" stop="92085"/>
                    <exon start="93287" stop="93481"/>
                    <exon start="94588" stop="94773"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>630</number_coding_nucleotides>
                  <number_encoded_amino_acids>210</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESSMEDSHSQQQQLHSTSEQQLRDGTNSSGGFRHNAAGSNGGAKYKLMTPAMLPISRSACITIPPGLSPSSFLESPVLLSNIKAEPSPTTGSFSKFQTVQGSGGAAAFLLTRGYASGNTYTERKASCFEYKYAGGSSSTSGSLATEHVISTGLNQQHNEPLEEVQDQCYPQLLVPSSLAKHEMETSKELSLSAPINVDASSKEESLYEPI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="91897" e_stop="92085"/>
            <exon e_start="93287" e_stop="93689"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91897" e_stop="92085" e_length="189"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="92086" i_stop="93286" i_length="1201"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93287" e_stop="93689" e_length="403"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91897" stop="92085"/>
              <exon start="93287" stop="93689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346308" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACTCAGAGATGGAACAAACTCCTCCGGAGGCTTCCGTCACAACGCCGCTGGATCGAACGGCGGTGCTAAGTACAAGCTCATGACTCCTGCTATGCTTCCGATCTCTAGGTCCGCCTGTATCACCATACCTCCCGGTCTCAGTCCTTCCTCCTTCCTCGAATCTCCTGTTCTCCTTTCTAACATCAAA : GCTGAGCCATCTCCGACTACAGGTTCCTTCTCCAAATTTCAAACAGTGCAAGGCTCTGGTGGGGCTGCTGCATTCTTATTGACAAGAGGTTATGCTAGTGGCAATACATACACTGAAAGAAAAGCAAGCTGCTTTGAATACAAATATGCCGGTGGATCTAGTTCTACATCAGGATCATTAGCAACTGAACATGTGGTAATGCTCTATTAGAAAATATTATTGATGTTGGATTAGAAACAAAAAGCAAATGAAACAAGAGCTTTTTTATTAGCAGTAGCCCTCTTTAACAACTGACTGATGTTTAATTTAGAAAAAATGAAAGTTTAACTCTGAGGTTCAGGTTCCTGTTCTTGTGTCTTTCTCTTGATATGGCATCTATTTGAGGTTAATGTCAAATGTGTGC</gDNA_template>
            <first_frame> Q  L  R  D  G  T  N  S  S  G  G  F  R  H  N  A  A  G  S  N  G  G  A  K  Y  K  L  M  T  P  A  M  L  P  I  S  R  S  A  C  I  T  I  P  P  G  L  S  P  S  S  F  L  E  S  P  V  L  L  S  N  I  K  :  A  E  P  S  P  T  T  G  S  F  S  K  F  Q  T  V  Q  G  S  G  G  A  A  A  F  L  L  T  R  G  Y  A  S  G  N  T  Y  T  E  R  K  A  S  C  F  E  Y  K  Y  A  G  G  S  S  S  T  S  G  S  L  A  T  E  H  V  V  M  L  Y  *  K  I  L  L  M  L  D  *  K  Q  K  A  N  E  T  R  A  F  L  L  A  V  A  L  F  N  N  *  L  M  F  N  L  E  K  M  K  V  *  L  *  G  S  G  S  C  S  C  V  F  L  L  I  W  H  L  F  E  V  N  V  K  C  V  </first_frame>
            <second_frame>  N  S  E  M  E  Q  T  P  P  E  A  S  V  T  T  P  L  D  R  T  A  V  L  S  T  S  S  *  L  L  L  C  F  R  S  L  G  P  P  V  S  P  Y  L  P  V  S  V  L  P  P  S  S  N  L  L  F  S  F  L  T  S  K :   L  S  H  L  R  L  Q  V  P  S  P  N  F  K  Q  C  K  A  L  V  G  L  L  H  S  Y  *  Q  E  V  M  L  V  A  I  H  T  L  K  E  K  Q  A  A  L  N  T  N  M  P  V  D  L  V  L  H  Q  D  H  *  Q  L  N  M  W  *  C  S  I  R  K  Y  Y  *  C  W  I  R  N  K  K  Q  M  K  Q  E  L  F  Y  *  Q  *  P  S  L  T  T  D  *  C  L  I  *  K  K  *  K  F  N  S  E  V  Q  V  P  V  L  V  S  F  S  *  Y  G  I  Y  L  R  L  M  S  N  V  C </second_frame>
            <third_frame>   T  Q  R  W  N  K  L  L  R  R  L  P  S  Q  R  R  W  I  E  R  R  C  *  V  Q  A  H  D  S  C  Y  A  S  D  L  *  V  R  L  Y  H  H  T  S  R  S  Q  S  F  L  L  P  R  I  S  C  S  P  F  *  H  Q   : S  *  A  I  S  D  Y  R  F  L  L  Q  I  S  N  S  A  R  L  W  W  G  C  C  I  L  I  D  K  R  L  C  *  W  Q  Y  I  H  *  K  K  S  K  L  L  *  I  Q  I  C  R  W  I  *  F  Y  I  R  I  I  S  N  *  T  C  G  N  A  L  L  E  N  I  I  D  V  G  L  E  T  K  S  K  *  N  K  S  F  F  I  S  S  S  P  L  *  Q  L  T  D  V  *  F  R  K  N  E  S  L  T  L  R  F  R  F  L  F  L  C  L  S  L  D  M  A  S  I  *  G  *  C  Q  M  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91897" stop="92085"/>
                    <exon start="93287" stop="93496"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLRDGTNSSGGFRHNAAGSNGGAKYKLMTPAMLPISRSACITIPPGLSPSSFLESPVLLSNIKAEPSPTTGSFSKFQTVQGSGGAAAFLLTRGYASGNTYTERKASCFEYKYAGGSSSTSGSLATEHVVMLY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="94859" PGL_stop="95132"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94859" e_stop="95132"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94859" e_stop="95132" e_length="274"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94859" stop="95132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237940" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCTGAAAGATCATCAGATGATGGGTATAACTGGCGAAAGTATGGCCAGAAACTTGTTAAAGGAAGTGAATTTCCGAGAAGCTATTACAAATGTACATATCCAAACTGCGAAGTGAAAAAGATATTTGAGCGGTCACCTGAAGGACAAATAACAGAGATTGTTTATAAAGGTTCTCATGATCATCCTAAACCCCAACTGAGCCGCCGATTTTCTCCTGGTGCTCTCATGTCTGTTCAAGAAGATAAATGTGAGAAAGAAGTGTGTTTCAGGGG</gDNA_template>
            <first_frame> H  L  K  D  H  Q  M  M  G  I  T  G  E  S  M  A  R  N  L  L  K  E  V  N  F  R  E  A  I  T  N  V  H  I  Q  T  A  K  *  K  R  Y  L  S  G  H  L  K  D  K  *  Q  R  L  F  I  K  V  L  M  I  I  L  N  P  N  *  A  A  D  F  L  L  V  L  S  C  L  F  K  K  I  N  V  R  K  K  C  V  S  G  </first_frame>
            <second_frame>  I  *  K  I  I  R  *  W  V  *  L  A  K  V  W  P  E  T  C  *  R  K  *  I  S  E  K  L  L  Q  M  Y  I  S  K  L  R  S  E  K  D  I  *  A  V  T  *  R  T  N  N  R  D  C  L  *  R  F  S  *  S  S  *  T  P  T  E  P  P  I  F  S  W  C  S  H  V  C  S  R  R  *  M  *  E  R  S  V  F  Q  G </second_frame>
            <third_frame>   S  E  R  S  S  D  D  G  Y  N  W  R  K  Y  G  Q  K  L  V  K  G  S  E  F  P  R  S  Y  Y  K  C  T  Y  P  N  C  E  V  K  K  I  F  E  R  S  P  E  G  Q  I  T  E  I  V  Y  K  G  S  H  D  H  P  K  P  Q  L  S  R  R  F  S  P  G  A  L  M  S  V  Q  E  D  K  C  E  K  E  V  C  F  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94861" stop="95130"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SERSSDDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERSPEGQITEIVYKGSHDHPKPQLSRRFSPGALMSVQEDKCEKEVCFR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="95286" PGL_stop="96781"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95286" e_stop="95414"/>
            <exon e_start="95484" e_stop="95639"/>
            <exon e_start="96138" e_stop="96781"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95286" e_stop="95414" e_length="129"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="95415" i_stop="95483" i_length="69"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95484" e_stop="95639" e_length="156"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.993">
            <gDNA_intron_boundary i_start="95640" i_stop="96137" i_length="498"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96138" e_stop="96781" e_length="644"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95286" stop="95414"/>
              <exon start="95484" stop="95639"/>
              <exon start="96138" stop="96486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95286" stop="95414"/>
              <exon start="95484" stop="95639"/>
              <exon start="96138" stop="96452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95333" stop="95414"/>
              <exon start="95484" stop="95639"/>
              <exon start="96138" stop="96781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96153" stop="96727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560554" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAACTGAGCCTAGTAGTACTCCCGTATCACCTCAGCAAGCGGACACTGATGGTCTTGAAGGAGCAGGGTCACAGATGCATGGCACTAATGATGATATGGATGAGGATGATCAATTTGCGAAAAGAAG : GAAAATGGATGGTGGGATGGATATAACACCAGTGATTAAGCCTATCCGTGAACCACGCGTTGTTGTTCAAACAGTCAGTGAAGTTGATATATTGGATGATGGGTACAAGTGGCGCAAATATGGACAGAAGGTGGTCCGAGGCAATCCTAATCCTAG : GAGCTATTACAAGTGCACCAATGCTGGATGCCCTGTCAGGAAACATGTGGAGAGGGCTTCTCATGATCCAAAAGCTGTTATCACCACATATGAAGGAAAACATAACCACGATGTACCCGCTGCAAAAAATAATAACCATGAAATGACAGGATCCTCGCCTGTAACCGGCAGTTCAAGGATCAGGGCAGGAGAGACCAACTCACTTAGTCTGGATCTAGGCGTTAGTACTGGATATCGTCTTGATAATGGGAACAACGGGCAACTTCACACCCTCCATCACCAAGTTCAAGTTTCACGTTCTGGTATGATGCTAGTACAGCCAGCTGCAGTTGCAGCGCGCTATGGTATTGTACATGGTGGTATGAGCCGATTTGGAGCTATAGATAATCGTGTTCAAGGACCTAGTTTTGAAACTTTGCCTTTACAACCTTCTACTCAGTCTCTCCAAAACTATGGAAAGATACTTCTTGGCCCGTGAATCGTATCTACCATCAACTATAAGAGCTTAACAATAAGAAGCCACCATCTATATTTTTTCCTGCATCTTGGTGGATTACAAAGATATCTCTAGTTGAAGTATAAATACTTCTAGGACTCGTCGCGTGATGCTGTATAATACACCTTCACCTAGTGTTCTTTGTGTA</gDNA_template>
            <first_frame> *  N  *  A  *  *  Y  S  R  I  T  S  A  S  G  H  *  W  S  *  R  S  R  V  T  D  A  W  H  *  *  *  Y  G  *  G  *  S  I  C  E  K  K  :  E  N  G  W  W  D  G  Y  N  T  S  D  *  A  Y  P  *  T  T  R  C  C  S  N  S  Q  *  S  *  Y  I  G  *  W  V  Q  V  A  Q  I  W  T  E  G  G  P  R  Q  S  *  S  *  :  E  L  L  Q  V  H  Q  C  W  M  P  C  Q  E  T  C  G  E  G  F  S  *  S  K  S  C  Y  H  H  I  *  R  K  T  *  P  R  C  T  R  C  K  K  *  *  P  *  N  D  R  I  L  A  C  N  R  Q  F  K  D  Q  G  R  R  D  Q  L  T  *  S  G  S  R  R  *  Y  W  I  S  S  *  *  W  E  Q  R  A  T  S  H  P  P  S  P  S  S  S  F  T  F  W  Y  D  A  S  T  A  S  C  S  C  S  A  L  W  Y  C  T  W  W  Y  E  P  I  W  S  Y  R  *  S  C  S  R  T  *  F  *  N  F  A  F  T  T  F  Y  S  V  S  P  K  L  W  K  D  T  S  W  P  V  N  R  I  Y  H  Q  L  *  E  L  N  N  K  K  P  P  S  I  F  F  P  A  S  W  W  I  T  K  I  S  L  V  E  V  *  I  L  L  G  L  V  A  *  C  C  I  I  H  L  H  L  V  F  F  V   </first_frame>
            <second_frame>  K  T  E  P  S  S  T  P  V  S  P  Q  Q  A  D  T  D  G  L  E  G  A  G  S  Q  M  H  G  T  N  D  D  M  D  E  D  D  Q  F  A  K  R  R :   K  M  D  G  G  M  D  I  T  P  V  I  K  P  I  R  E  P  R  V  V  V  Q  T  V  S  E  V  D  I  L  D  D  G  Y  K  W  R  K  Y  G  Q  K  V  V  R  G  N  P  N  P  R :   S  Y  Y  K  C  T  N  A  G  C  P  V  R  K  H  V  E  R  A  S  H  D  P  K  A  V  I  T  T  Y  E  G  K  H  N  H  D  V  P  A  A  K  N  N  N  H  E  M  T  G  S  S  P  V  T  G  S  S  R  I  R  A  G  E  T  N  S  L  S  L  D  L  G  V  S  T  G  Y  R  L  D  N  G  N  N  G  Q  L  H  T  L  H  H  Q  V  Q  V  S  R  S  G  M  M  L  V  Q  P  A  A  V  A  A  R  Y  G  I  V  H  G  G  M  S  R  F  G  A  I  D  N  R  V  Q  G  P  S  F  E  T  L  P  L  Q  P  S  T  Q  S  L  Q  N  Y  G  K  I  L  L  G  P  *  I  V  S  T  I  N  Y  K  S  L  T  I  R  S  H  H  L  Y  F  F  L  H  L  G  G  L  Q  R  Y  L  *  L  K  Y  K  Y  F  *  D  S  S  R  D  A  V  *  Y  T  F  T  *  C  S  L  C  </second_frame>
            <third_frame>   K  L  S  L  V  V  L  P  Y  H  L  S  K  R  T  L  M  V  L  K  E  Q  G  H  R  C  M  A  L  M  M  I  W  M  R  M  I  N  L  R  K  E   : G  K  W  M  V  G  W  I  *  H  Q  *  L  S  L  S  V  N  H  A  L  L  F  K  Q  S  V  K  L  I  Y  W  M  M  G  T  S  G  A  N  M  D  R  R  W  S  E  A  I  L  I  L   : G  A  I  T  S  A  P  M  L  D  A  L  S  G  N  M  W  R  G  L  L  M  I  Q  K  L  L  S  P  H  M  K  E  N  I  T  T  M  Y  P  L  Q  K  I  I  T  M  K  *  Q  D  P  R  L  *  P  A  V  Q  G  S  G  Q  E  R  P  T  H  L  V  W  I  *  A  L  V  L  D  I  V  L  I  M  G  T  T  G  N  F  T  P  S  I  T  K  F  K  F  H  V  L  V  *  C  *  Y  S  Q  L  Q  L  Q  R  A  M  V  L  Y  M  V  V  *  A  D  L  E  L  *  I  I  V  F  K  D  L  V  L  K  L  C  L  Y  N  L  L  L  S  L  S  K  T  M  E  R  Y  F  L  A  R  E  S  Y  L  P  S  T  I  R  A  *  Q  *  E  A  T  I  Y  I  F  S  C  I  L  V  D  Y  K  D  I  S  S  *  S  I  N  T  S  R  T  R  R  V  M  L  Y  N  T  P  S  P  S  V  L  C  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95287" stop="95414"/>
                    <exon start="95484" stop="95639"/>
                    <exon start="96138" stop="96615"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTEPSSTPVSPQQADTDGLEGAGSQMHGTNDDMDEDDQFAKRRKMDGGMDITPVIKPIREPRVVVQTVSEVDILDDGYKWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAAKNNNHEMTGSSPVTGSSRIRAGETNSLSLDLGVSTGYRLDNGNNGQLHTLHHQVQVSRSGMMLVQPAAVAARYGIVHGGMSRFGAIDNRVQGPSFETLPLQPSTQSLQNYGKILLGP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="96944" PGL_stop="97726"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96944" e_stop="96965"/>
            <exon e_start="97036" e_stop="97301"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.682"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.682">
            <gDNA_exon_boundary e_start="96944" e_stop="96965" e_length="22"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="96966" i_stop="97035" i_length="70"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97036" e_stop="97301" e_length="266"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96944" stop="96965"/>
              <exon start="97036" stop="97301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352981" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCTATAATTTTCATTTGAT : AGATAAAAAAGACTTCGATTAGTTTCTGATAGAACAGATCCTAGCAAGATTAAATGACCTGTCTTTTTAAATTAATACAAACAGAAAAAAGAAGAGGTGCCACTATCTGTCTCACCATTATCAAGCTACAAGTTACATGCACCTAATTACGGTAGGTAGGATCTACACAGACTTTACCTCTACCTTTGCAGGATAGAGAGACTGTTTCCGATAAGAGATTATTTCCATGCACAAGAAGCAACTAAATCTCGATTCATCCAGCCAAG</gDNA_template>
            <first_frame> F  S  I  I  F  I  *   : *  I  K  K  T  S  I  S  F  *  *  N  R  S  *  Q  D  *  M  T  C  L  F  K  L  I  Q  T  E  K  R  R  G  A  T  I  C  L  T  I  I  K  L  Q  V  T  C  T  *  L  R  *  V  G  S  T  Q  T  L  P  L  P  L  Q  D  R  E  T  V  S  D  K  R  L  F  P  C  T  R  S  N  *  I  S  I  H  P  A  K </first_frame>
            <second_frame>  F  L  *  F  S  F  D  :  R  *  K  R  L  R  L  V  S  D  R  T  D  P  S  K  I  K  *  P  V  F  L  N  *  Y  K  Q  K  K  E  E  V  P  L  S  V  S  P  L  S  S  Y  K  L  H  A  P  N  Y  G  R  *  D  L  H  R  L  Y  L  Y  L  C  R  I  E  R  L  F  P  I  R  D  Y  F  H  A  Q  E  A  T  K  S  R  F  I  Q  P   </second_frame>
            <third_frame>   F  Y  N  F  H  L  I :   D  K  K  D  F  D  *  F  L  I  E  Q  I  L  A  R  L  N  D  L  S  F  *  I  N  T  N  R  K  K  K  R  C  H  Y  L  S  H  H  Y  Q  A  T  S  Y  M  H  L  I  T  V  G  R  I  Y  T  D  F  T  S  T  F  A  G  *  R  D  C  F  R  *  E  I  I  S  M  H  K  K  Q  L  N  L  D  S  S  S  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0184E04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="97024" e_stop="97726"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="97024" e_stop="97726" e_length="703"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97024" stop="97726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367924" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAACAATGTGAGAGATAAAAAAGACTTCGATTAGTTTCTGATAGAACAGATCCTAGCAAGATTAAATGACCTGTCTTTTTAAATTAATACAAACAGAAAAAAGAAGAGGTGCCACTATCTGTCTCACCATTATCAAGCTACAAGTTACATGCACCTAATTACGGTAGGTAGGATCTACACAGACTTTACCTCTACCTTTGCAGGATAGAGAGACTGTTTCCGATAAGAGATTATTTCCATGCACAAGAAGCAACTAAATCTCGATTCATCCAGCCAAGATAGAGCGCGCCATTTCTCTCATTAAGCGTATAACTTTGGTAGTAATTCTCCAGCAGGGTCTTGATAGTAGCATTTACTGAGGAGCTTAACGGATATGGTTTAAACCCGGCCACAGCAAATCGTGATCTCCACCTTTCAAGCAGCTCGTGTCGTTCCACTCTCTCTGCCCCTTCACATGCTAATATGTTGACAATTTCACGGGCTAAGCAGTGTTGCTCAACGTTGATTCGTTCCTTATGGTCTCTAGGTAGAGCCACGTCTATTGATTCGAAAACAGATAGGTAGTAGTTCAGTGTCTCCAAGAACCTGGGGAAGAATTGGGCTGTGTTAGTGTTGGACTCTTGCTCCACTAAGGTAACAATCTTGGGAGATAAGCTTTTAACCATCCTCAGAAGTCTGTCTCTGTGATTTTGAGTTCCAACGC</gDNA_template>
            <first_frame> E  Q  C  E  R  *  K  R  L  R  L  V  S  D  R  T  D  P  S  K  I  K  *  P  V  F  L  N  *  Y  K  Q  K  K  E  E  V  P  L  S  V  S  P  L  S  S  Y  K  L  H  A  P  N  Y  G  R  *  D  L  H  R  L  Y  L  Y  L  C  R  I  E  R  L  F  P  I  R  D  Y  F  H  A  Q  E  A  T  K  S  R  F  I  Q  P  R  *  S  A  P  F  L  S  L  S  V  *  L  W  *  *  F  S  S  R  V  L  I  V  A  F  T  E  E  L  N  G  Y  G  L  N  P  A  T  A  N  R  D  L  H  L  S  S  S  S  C  R  S  T  L  S  A  P  S  H  A  N  M  L  T  I  S  R  A  K  Q  C  C  S  T  L  I  R  S  L  W  S  L  G  R  A  T  S  I  D  S  K  T  D  R  *  *  F  S  V  S  K  N  L  G  K  N  W  A  V  L  V  L  D  S  C  S  T  K  V  T  I  L  G  D  K  L  L  T  I  L  R  S  L  S  L  *  F  *  V  P  T  </first_frame>
            <second_frame>  N  N  V  R  D  K  K  D  F  D  *  F  L  I  E  Q  I  L  A  R  L  N  D  L  S  F  *  I  N  T  N  R  K  K  K  R  C  H  Y  L  S  H  H  Y  Q  A  T  S  Y  M  H  L  I  T  V  G  R  I  Y  T  D  F  T  S  T  F  A  G  *  R  D  C  F  R  *  E  I  I  S  M  H  K  K  Q  L  N  L  D  S  S  S  Q  D  R  A  R  H  F  S  H  *  A  Y  N  F  G  S  N  S  P  A  G  S  *  *  *  H  L  L  R  S  L  T  D  M  V  *  T  R  P  Q  Q  I  V  I  S  T  F  Q  A  A  R  V  V  P  L  S  L  P  L  H  M  L  I  C  *  Q  F  H  G  L  S  S  V  A  Q  R  *  F  V  P  Y  G  L  *  V  E  P  R  L  L  I  R  K  Q  I  G  S  S  S  V  S  P  R  T  W  G  R  I  G  L  C  *  C  W  T  L  A  P  L  R  *  Q  S  W  E  I  S  F  *  P  S  S  E  V  C  L  C  D  F  E  F  Q  R </second_frame>
            <third_frame>   T  M  *  E  I  K  K  T  S  I  S  F  *  *  N  R  S  *  Q  D  *  M  T  C  L  F  K  L  I  Q  T  E  K  R  R  G  A  T  I  C  L  T  I  I  K  L  Q  V  T  C  T  *  L  R  *  V  G  S  T  Q  T  L  P  L  P  L  Q  D  R  E  T  V  S  D  K  R  L  F  P  C  T  R  S  N  *  I  S  I  H  P  A  K  I  E  R  A  I  S  L  I  K  R  I  T  L  V  V  I  L  Q  Q  G  L  D  S  S  I  Y  *  G  A  *  R  I  W  F  K  P  G  H  S  K  S  *  S  P  P  F  K  Q  L  V  S  F  H  S  L  C  P  F  T  C  *  Y  V  D  N  F  T  G  *  A  V  L  L  N  V  D  S  F  L  M  V  S  R  *  S  H  V  Y  *  F  E  N  R  *  V  V  V  Q  C  L  Q  E  P  G  E  E  L  G  C  V  S  V  G  L  L  L  H  *  G  N  N  L  G  R  *  A  F  N  H  P  Q  K  S  V  S  V  I  L  S  S  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97348" stop="97587"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSSRVLIVAFTEELNGYGLNPATANRDLHLSSSSCRSTLSAPSHANMLTISRAKQCCSTLIRSLWSLGRATSIDSKTDR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="97645" PGL_stop="97396"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97645" e_stop="97396"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="97645" e_stop="97396" e_length="250"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97645" stop="97396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239943" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAGTCCAACACTAACACAGCCCAATTCTTCCCCAGGTTCTTGGAGACACTGAACTACTACCTATCTGTTTTCGAATCAATAGACGTGGCTCTACCTAGAGACCATAAGGAACGAATCAACGTTGAGCAACACTGCTTAGCCCGTGAAATTGTCAACATATTAGCATGTGAAGGGGCAGAGAGAGTGGAACGACACGAGCTGCTTGAAAGGTGGAGATCACGATTTGCTGTGGCCGGGTTTAAACCATA</gDNA_template>
            <first_frame> K  S  P  T  L  T  Q  P  N  S  S  P  G  S  W  R  H  *  T  T  T  Y  L  F  S  N  Q  *  T  W  L  Y  L  E  T  I  R  N  E  S  T  L  S  N  T  A  *  P  V  K  L  S  T  Y  *  H  V  K  G  Q  R  E  W  N  D  T  S  C  L  K  G  G  D  H  D  L  L  W  P  G  L  N  H  </first_frame>
            <second_frame>  R  V  Q  H  *  H  S  P  I  L  P  Q  V  L  G  D  T  E  L  L  P  I  C  F  R  I  N  R  R  G  S  T  *  R  P  *  G  T  N  Q  R  *  A  T  L  L  S  P  *  N  C  Q  H  I  S  M  *  R  G  R  E  S  G  T  T  R  A  A  *  K  V  E  I  T  I  C  C  G  R  V  *  T  I </second_frame>
            <third_frame>   E  S  N  T  N  T  A  Q  F  F  P  R  F  L  E  T  L  N  Y  Y  L  S  V  F  E  S  I  D  V  A  L  P  R  D  H  K  E  R  I  N  V  E  Q  H  C  L  A  R  E  I  V  N  I  L  A  C  E  G  A  E  R  V  E  R  H  E  L  L  E  R  W  R  S  R  F  A  V  A  G  F  K  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97643" stop="97398"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESNTNTAQFFPRFLETLNYYLSVFESIDVALPRDHKERINVEQHCLAREIVNILACEGAERVERHELLERWRSRFAVAGFKP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="104924" PGL_stop="97654"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100453" e_stop="100264"/>
            <exon e_start="99020" e_stop="97654"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.934" e_score="1.000"/>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100453" e_stop="100264" e_length="190"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.934">
            <gDNA_intron_boundary i_start="100263" i_stop="99021" i_length="1243"/>
          </intron>
          <exon e_serial="2" e_score="0.959">
            <gDNA_exon_boundary e_start="99020" e_stop="97654" e_length="1367"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100453" stop="100264"/>
              <exon start="99020" stop="98435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100438" stop="100264"/>
              <exon start="99020" stop="98419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100316" stop="100264"/>
              <exon start="99020" stop="98529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100316" stop="100264"/>
              <exon start="99020" stop="98675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100303" stop="100264"/>
              <exon start="99020" stop="98470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100303" stop="100264"/>
              <exon start="99020" stop="98523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100278" stop="100264"/>
              <exon start="99020" stop="98306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98971" stop="98525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98623" stop="97991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98477" stop="97664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98449" stop="97818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98337" stop="97654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98337" stop="97818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98303" stop="97731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98303" stop="97750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98170" stop="97924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319109" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTTATTACAATGTTGAAAATGAAGTTTGATTTTTTTTTTCTCTGACTTTCTTTTTAGTATTTTCTTCACCACTAGTGGCTTACTAAAAATGGAATATGCGTTGTCTAAAGTTAAGCTTTTTTTCTCTGATTATTTCATTAACCATGTTCTTCAATCTTTTTGCTTAAGATTTCTTCTCTGAGTATCAG : GATAGTTGGATCTTTGAAATGTGTTATGGATGTGAATGTTAAAGCTTGGAGCTGGTGAACTTTTTGTAACGAGGCGGGGTGTATGCTGGAAATGTTTCTGTTGTCTTCTGGATATCTATGATGTGCTAAACGGTTAGATAATATTTCACGATGAGGCCTTCTCAGAACCCTGAGGAAATCAACGAGTTCAACAAATTCTATAACCAACCCATAGAGTATCAAGAATCCTATTTCCTGCCTTCCGTTAACAATCCGAACAACAACCAATCGTTCTATGCTGATGTCTCTGCCTTAAAACCCGCCCAACACTGTTATGTTGAATCATCCGCGGGAAATTCTAGTGAACTTGTTTCTGATTCACCTCCTATTGTTAATTTCAACCCCATGATGAACCAAGGTTCTGATTCGTGTCGTTCAGACATGCATCATTCTCCTGATGATACATTTCAGTCGTCGGGTAACAGTTCGTGCTACACTAGTGATGTTACTGACCTGAAGCACAAGTTAAGGGAACTTGAAACTGCAATGCTGGGGCCAGATTCAGAAAGCTTGGAATCATTTAATAATACTATCCCTGTGACTGCAGCCAATCAAGTTCCATCAGAGTCGGATAAATTGGTTGGAATGATGGAGATGATGCCTAGCGGAGACTTGAAAGAAGTTCTAATTGCTTGTGCTAAAGCAATAGCGGAGAATAATTTGATCACAGCTGAATGGTTAATGTCAGAACTACGCACGGTGGTATCTGTTTGTGGGTCTCCCATACAACGTTTAGGTGCTTATATGCTGGAAGGTTTAGTTGCTAGATTGGCCTCCTCGGGAAGCTCCATCTACAAGGCCTTAAGGTGCAAAGAGCCTACTAGTGTCGAGCTATTCTCGTACATGCACTTGCTTTATGAAATCTGTCCATACTTCAAGTTTGGATATTTGTCAGCAAATGGTGCAATTGTTGATGCCATGAAAGATGAGAACTCAATTCATATAATCGATTTCCAGATTGCTCAGGGTAGCCAGTGGATCACCTTAATCCATGCTCTTGCAGCACGGCCTGGTGGACCTCCAAGAATCCGCATCACAGGGATTGATGACTCTACATCAGCTTACGCCAGAGGAGGAGGGATTGAAATCGTAGGTCGAAGACTGTCAAGCATTGCTGCATCTTGCAATGTACCTTTCGAATTTCATCCCGTGTCTGCTTCTTGTCCAGATATTGAGATTGAGCATCTTAAGGTTCTTCCCGGGGAACCATTGGCTGTTAACTTTGCGCTCGTCTTGCACCATATGCCTGATGAGAGCGTTGGAACTCAAAATCACAGAGACAGACTTCTGAGGATGGTTAAAAGCTTATCTCCCAAGATTGTTACCTT</gDNA_template>
            <first_frame> I  L  L  Q  C  *  K  *  S  L  I  F  F  F  S  D  F  L  F  S  I  F  F  T  T  S  G  L  L  K  M  E  Y  A  L  S  K  V  K  L  F  F  S  D  Y  F  I  N  H  V  L  Q  S  F  C  L  R  F  L  L  *  V  S   : G  *  L  D  L  *  N  V  L  W  M  *  M  L  K  L  G  A  G  E  L  F  V  T  R  R  G  V  C  W  K  C  F  C  C  L  L  D  I  Y  D  V  L  N  G  *  I  I  F  H  D  E  A  F  S  E  P  *  G  N  Q  R  V  Q  Q  I  L  *  P  T  H  R  V  S  R  I  L  F  P  A  F  R  *  Q  S  E  Q  Q  P  I  V  L  C  *  C  L  C  L  K  T  R  P  T  L  L  C  *  I  I  R  G  K  F  *  *  T  C  F  *  F  T  S  Y  C  *  F  Q  P  H  D  E  P  R  F  *  F  V  S  F  R  H  A  S  F  S  *  *  Y  I  S  V  V  G  *  Q  F  V  L  H  *  *  C  Y  *  P  E  A  Q  V  K  G  T  *  N  C  N  A  G  A  R  F  R  K  L  G  I  I  *  *  Y  Y  P  C  D  C  S  Q  S  S  S  I  R  V  G  *  I  G  W  N  D  G  D  D  A  *  R  R  L  E  R  S  S  N  C  L  C  *  S  N  S  G  E  *  F  D  H  S  *  M  V  N  V  R  T  T  H  G  G  I  C  L  W  V  S  H  T  T  F  R  C  L  Y  A  G  R  F  S  C  *  I  G  L  L  G  K  L  H  L  Q  G  L  K  V  Q  R  A  Y  *  C  R  A  I  L  V  H  A  L  A  L  *  N  L  S  I  L  Q  V  W  I  F  V  S  K  W  C  N  C  *  C  H  E  R  *  E  L  N  S  Y  N  R  F  P  D  C  S  G  *  P  V  D  H  L  N  P  C  S  C  S  T  A  W  W  T  S  K  N  P  H  H  R  D  *  *  L  Y  I  S  L  R  Q  R  R  R  D  *  N  R  R  S  K  T  V  K  H  C  C  I  L  Q  C  T  F  R  I  S  S  R  V  C  F  L  S  R  Y  *  D  *  A  S  *  G  S  S  R  G  T  I  G  C  *  L  C  A  R  L  A  P  Y  A  *  *  E  R  W  N  S  K  S  Q  R  Q  T  S  E  D  G  *  K  L  I  S  Q  D  C  Y  L </first_frame>
            <second_frame>  F  Y  Y  N  V  E  N  E  V  *  F  F  F  S  L  T  F  F  L  V  F  S  S  P  L  V  A  Y  *  K  W  N  M  R  C  L  K  L  S  F  F  S  L  I  I  S  L  T  M  F  F  N  L  F  A  *  D  F  F  S  E  Y  Q  :  D  S  W  I  F  E  M  C  Y  G  C  E  C  *  S  L  E  L  V  N  F  L  *  R  G  G  V  Y  A  G  N  V  S  V  V  F  W  I  S  M  M  C  *  T  V  R  *  Y  F  T  M  R  P  S  Q  N  P  E  E  I  N  E  F  N  K  F  Y  N  Q  P  I  E  Y  Q  E  S  Y  F  L  P  S  V  N  N  P  N  N  N  Q  S  F  Y  A  D  V  S  A  L  K  P  A  Q  H  C  Y  V  E  S  S  A  G  N  S  S  E  L  V  S  D  S  P  P  I  V  N  F  N  P  M  M  N  Q  G  S  D  S  C  R  S  D  M  H  H  S  P  D  D  T  F  Q  S  S  G  N  S  S  C  Y  T  S  D  V  T  D  L  K  H  K  L  R  E  L  E  T  A  M  L  G  P  D  S  E  S  L  E  S  F  N  N  T  I  P  V  T  A  A  N  Q  V  P  S  E  S  D  K  L  V  G  M  M  E  M  M  P  S  G  D  L  K  E  V  L  I  A  C  A  K  A  I  A  E  N  N  L  I  T  A  E  W  L  M  S  E  L  R  T  V  V  S  V  C  G  S  P  I  Q  R  L  G  A  Y  M  L  E  G  L  V  A  R  L  A  S  S  G  S  S  I  Y  K  A  L  R  C  K  E  P  T  S  V  E  L  F  S  Y  M  H  L  L  Y  E  I  C  P  Y  F  K  F  G  Y  L  S  A  N  G  A  I  V  D  A  M  K  D  E  N  S  I  H  I  I  D  F  Q  I  A  Q  G  S  Q  W  I  T  L  I  H  A  L  A  A  R  P  G  G  P  P  R  I  R  I  T  G  I  D  D  S  T  S  A  Y  A  R  G  G  G  I  E  I  V  G  R  R  L  S  S  I  A  A  S  C  N  V  P  F  E  F  H  P  V  S  A  S  C  P  D  I  E  I  E  H  L  K  V  L  P  G  E  P  L  A  V  N  F  A  L  V  L  H  H  M  P  D  E  S  V  G  T  Q  N  H  R  D  R  L  L  R  M  V  K  S  L  S  P  K  I  V  T   </second_frame>
            <third_frame>   F  I  T  M  L  K  M  K  F  D  F  F  F  L  *  L  S  F  *  Y  F  L  H  H  *  W  L  T  K  N  G  I  C  V  V  *  S  *  A  F  F  L  *  L  F  H  *  P  C  S  S  I  F  L  L  K  I  S  S  L  S  I  R :   I  V  G  S  L  K  C  V  M  D  V  N  V  K  A  W  S  W  *  T  F  C  N  E  A  G  C  M  L  E  M  F  L  L  S  S  G  Y  L  *  C  A  K  R  L  D  N  I  S  R  *  G  L  L  R  T  L  R  K  S  T  S  S  T  N  S  I  T  N  P  *  S  I  K  N  P  I  S  C  L  P  L  T  I  R  T  T  T  N  R  S  M  L  M  S  L  P  *  N  P  P  N  T  V  M  L  N  H  P  R  E  I  L  V  N  L  F  L  I  H  L  L  L  L  I  S  T  P  *  *  T  K  V  L  I  R  V  V  Q  T  C  I  I  L  L  M  I  H  F  S  R  R  V  T  V  R  A  T  L  V  M  L  L  T  *  S  T  S  *  G  N  L  K  L  Q  C  W  G  Q  I  Q  K  A  W  N  H  L  I  I  L  S  L  *  L  Q  P  I  K  F  H  Q  S  R  I  N  W  L  E  *  W  R  *  C  L  A  E  T  *  K  K  F  *  L  L  V  L  K  Q  *  R  R  I  I  *  S  Q  L  N  G  *  C  Q  N  Y  A  R  W  Y  L  F  V  G  L  P  Y  N  V  *  V  L  I  C  W  K  V  *  L  L  D  W  P  P  R  E  A  P  S  T  R  P  *  G  A  K  S  L  L  V  S  S  Y  S  R  T  C  T  C  F  M  K  S  V  H  T  S  S  L  D  I  C  Q  Q  M  V  Q  L  L  M  P  *  K  M  R  T  Q  F  I  *  S  I  S  R  L  L  R  V  A  S  G  S  P  *  S  M  L  L  Q  H  G  L  V  D  L  Q  E  S  A  S  Q  G  L  M  T  L  H  Q  L  T  P  E  E  E  G  L  K  S  *  V  E  D  C  Q  A  L  L  H  L  A  M  Y  L  S  N  F  I  P  C  L  L  L  V  Q  I  L  R  L  S  I  L  R  F  F  P  G  N  H  W  L  L  T  L  R  S  S  C  T  I  C  L  M  R  A  L  E  L  K  I  T  E  T  D  F  *  G  W  L  K  A  Y  L  P  R  L  L  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98879" stop="97656"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1224</number_coding_nucleotides>
                  <number_encoded_amino_acids>408</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFTMRPSQNPEEINEFNKFYNQPIEYQESYFLPSVNNPNNNQSFYADVSALKPAQHCYVESSAGNSSELVSDSPPIVNFNPMMNQGSDSCRSDMHHSPDDTFQSSGNSSCYTSDVTDLKHKLRELETAMLGPDSESLESFNNTIPVTAANQVPSESDKLVGMMEMMPSGDLKEVLIACAKAIAENNLITAEWLMSELRTVVSVCGSPIQRLGAYMLEGLVARLASSGSSIYKALRCKEPTSVELFSYMHLLYEICPYFKFGYLSANGAIVDAMKDENSIHIIDFQIAQGSQWITLIHALAARPGGPPRIRITGIDDSTSAYARGGGIEIVGRRLSSIAASCNVPFEFHPVSASCPDIEIEHLKVLPGEPLAVNFALVLHHMPDESVGTQNHRDRLLRMVKSLSPKIVT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="104904" e_stop="104683"/>
            <exon e_start="104190" e_stop="103757"/>
            <exon e_start="103605" e_stop="103531"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.991"/>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="0.991"/>
          <exon-only e_score="0.413"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="104904" e_stop="104683" e_length="222"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="104682" i_stop="104191" i_length="492"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="104190" e_stop="103757" e_length="434"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="103756" i_stop="103606" i_length="151"/>
          </intron>
          <exon e_serial="3" e_score="0.413">
            <gDNA_exon_boundary e_start="103605" e_stop="103531" e_length="75"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104904" stop="104683"/>
              <exon start="104190" stop="103757"/>
              <exon start="103605" stop="103531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104890" stop="104683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104882" stop="104683"/>
              <exon start="104190" stop="103905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104880" stop="104683"/>
              <exon start="104190" stop="103807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104880" stop="104683"/>
              <exon start="104190" stop="104002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104878" stop="104683"/>
              <exon start="104190" stop="103884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104878" stop="104683"/>
              <exon start="104190" stop="103886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104868" stop="104683"/>
              <exon start="104190" stop="103783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104858" stop="104683"/>
              <exon start="104190" stop="103905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421940" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104832" stop="104683"/>
              <exon start="104190" stop="103894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104787" stop="104683"/>
              <exon start="104190" stop="103896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104190" stop="103814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422033" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCGTAAAATTCAACTGGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG : GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAATATGATTTCTTGTGTTGCGATGAATCATGTATTATTGTTACTTGCTAATAATGATGTGTTGACTATGCATTATTTAGTATGATAATGTTTTGAAATCAGCTTAAATGAGAGAATTGAGATTTATGTAGCCAACAT : TGTTGTGAATGGCGAGCGAAAATCGAAAAGCATATATATCTGTACCTAGACACTAGAACAGCGAAAAACAATCCA</gDNA_template>
            <first_frame> D  R  K  I  Q  L  E  Y  P  P  P  A  S  D  Q  K  K  S  S  *  E  G  R  *  I  L  I  S  Q  H  R  Q  S  P  S  I  Q  L  *  I  E  T  H  R  L  L  K  P  S  V  I  S  T  H  S  I  T  S  G  S  P  P  S  P  G  F  L  S  P  S  D  T  S  P  :  E  *  S  Q  G  L  E  G  H  R  W  L  P  E  V  *  L  G  *  W  V  V  S  C  M  L  I  R  I  Q  L  A  G  S  W  V  S  S  Q  M  K  E  R  *  P  K  P  S  T  R  F  N  C  F  P  *  F  S  G  S  F  G  F  P  F  V  V  S  P  R  C  Y  *  N  S  G  H  S  L  F  S  *  E  L  C  *  K  *  Y  H  *  *  S  V  S  G  Y  Q  L  N  M  I  S  C  V  A  M  N  H  V  L  L  L  L  A  N  N  D  V  L  T  M  H  Y  L  V  *  *  C  F  E  I  S  L  N  E  R  I  E  I  Y  V  A  N  I :   V  V  N  G  E  R  K  S  K  S  I  Y  I  C  T  *  T  L  E  Q  R  K  T  I   </first_frame>
            <second_frame>  I  V  K  F  N  W  S  I  R  R  R  Q  V  T  R  R  R  A  A  K  K  E  D  E  Y  *  Y  H  S  I  G  K  A  R  V  S  S  C  R  S  K  P  T  V  Y  *  N  R  R  *  F  Q  H  T  R  L  P  P  A  H  H  H  H  R  D  F  C  H  R  R  I  P  L  R :   N  K  A  R  D  *  R  A  I  D  G  Y  R  R  F  D  W  A  N  G  W  F  H  V  C  L  S  E  F  S  W  Q  A  H  G  F  L  P  K  *  R  R  G  S  Q  S  Q  V  Q  D  L  T  A  S  L  N  F  L  V  L  L  D  S  L  L  *  F  P  Q  D  V  I  K  T  V  G  I  L  S  S  H  E  N  F  V  E  S  N  T  I  N  N  Q  S  L  V  T  N  L  I  *  F  L  V  L  R  *  I  M  Y  Y  C  Y  L  L  I  M  M  C  *  L  C  I  I  *  Y  D  N  V  L  K  S  A  *  M  R  E  L  R  F  M  *  P  T   : L  L  *  M  A  S  E  N  R  K  A  Y  I  S  V  P  R  H  *  N  S  E  K  Q  S  </second_frame>
            <third_frame>   S  *  N  S  T  G  V  S  A  A  G  K  *  P  E  E  E  Q  L  R  R  K  M  N  T  D  I  T  A  S  A  K  P  E  Y  P  V  V  D  R  N  P  P  F  T  K  T  V  G  N  F  N  T  L  D  Y  L  R  L  T  T  I  T  G  I  S  V  T  V  G  Y  L  S   : G  I  K  P  G  I  R  G  P  S  M  V  T  G  G  L  I  G  L  M  G  G  F  M  Y  A  Y  Q  N  S  A  G  R  L  M  G  F  F  P  N  E  G  E  V  A  K  A  K  Y  K  I  *  L  L  P  L  I  F  W  F  F  W  I  P  F  C  S  F  P  K  M  L  L  K  Q  W  A  F  S  L  L  M  R  T  L  L  K  V  I  P  L  I  I  S  L  W  L  P  T  *  Y  D  F  L  C  C  D  E  S  C  I  I  V  T  C  *  *  *  C  V  D  Y  A  L  F  S  M  I  M  F  *  N  Q  L  K  *  E  N  *  D  L  C  S  Q  H  :  C  C  E  W  R  A  K  I  E  K  H  I  Y  L  Y  L  D  T  R  T  A  K  N  N  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104863" stop="104683"/>
                    <exon start="104190" stop="104036"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PEEEQLRRKMNTDITASAKPEYPVVDRNPPFTKTVGNFNTLDYLRLTTITGISVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVAKAKYKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="104890" e_stop="104683"/>
            <exon e_start="104190" e_stop="103891"/>
            <exon e_start="103792" e_stop="103779"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.960" e_score="1.000"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104890" e_stop="104683" e_length="208"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="104682" i_stop="104191" i_length="492"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="104190" e_stop="103891" e_length="300"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.960">
            <gDNA_intron_boundary i_start="103890" i_stop="103793" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="0.571">
            <gDNA_exon_boundary e_start="103792" e_stop="103779" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104890" stop="104683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104887" stop="104683"/>
              <exon start="104190" stop="103891"/>
              <exon start="103792" stop="103779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541646" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104887" stop="104683"/>
              <exon start="104190" stop="103891"/>
              <exon start="103792" stop="103779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104886" stop="104683"/>
              <exon start="104190" stop="103891"/>
              <exon start="103792" stop="103779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104882" stop="104683"/>
              <exon start="104190" stop="103905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104880" stop="104683"/>
              <exon start="104190" stop="104002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104858" stop="104683"/>
              <exon start="104190" stop="103905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421940" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104832" stop="104683"/>
              <exon start="104190" stop="103894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104787" stop="104683"/>
              <exon start="104190" stop="103896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720723" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG : GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAAT : CTTAAATGAGAGAA</gDNA_template>
            <first_frame> T  G  V  S  A  A  G  K  *  P  E  E  E  Q  L  R  R  K  M  N  T  D  I  T  A  S  A  K  P  E  Y  P  V  V  D  R  N  P  P  F  T  K  T  V  G  N  F  N  T  L  D  Y  L  R  L  T  T  I  T  G  I  S  V  T  V  G  Y  L  S   : G  I  K  P  G  I  R  G  P  S  M  V  T  G  G  L  I  G  L  M  G  G  F  M  Y  A  Y  Q  N  S  A  G  R  L  M  G  F  F  P  N  E  G  E  V  A  K  A  K  Y  K  I  *  L  L  P  L  I  F  W  F  F  W  I  P  F  C  S  F  P  K  M  L  L  K  Q  W  A  F  S  L  L  M  R  T  L  L  K  V  I  P  L  I  I  S  L  W  L  P  T  *   : S  *  M  R  E </first_frame>
            <second_frame>  L  E  Y  P  P  P  A  S  D  Q  K  K  S  S  *  E  G  R  *  I  L  I  S  Q  H  R  Q  S  P  S  I  Q  L  *  I  E  T  H  R  L  L  K  P  S  V  I  S  T  H  S  I  T  S  G  S  P  P  S  P  G  F  L  S  P  S  D  T  S  P  :  E  *  S  Q  G  L  E  G  H  R  W  L  P  E  V  *  L  G  *  W  V  V  S  C  M  L  I  R  I  Q  L  A  G  S  W  V  S  S  Q  M  K  E  R  *  P  K  P  S  T  R  F  N  C  F  P  *  F  S  G  S  F  G  F  P  F  V  V  S  P  R  C  Y  *  N  S  G  H  S  L  F  S  *  E  L  C  *  K  *  Y  H  *  *  S  V  S  G  Y  Q  L  N  :  L  K  *  E   </second_frame>
            <third_frame>   W  S  I  R  R  R  Q  V  T  R  R  R  A  A  K  K  E  D  E  Y  *  Y  H  S  I  G  K  A  R  V  S  S  C  R  S  K  P  T  V  Y  *  N  R  R  *  F  Q  H  T  R  L  P  P  A  H  H  H  H  R  D  F  C  H  R  R  I  P  L  R :   N  K  A  R  D  *  R  A  I  D  G  Y  R  R  F  D  W  A  N  G  W  F  H  V  C  L  S  E  F  S  W  Q  A  H  G  F  L  P  K  *  R  R  G  S  Q  S  Q  V  Q  D  L  T  A  S  L  N  F  L  V  L  L  D  S  L  L  *  F  P  Q  D  V  I  K  T  V  G  I  L  S  S  H  E  N  F  V  E  S  N  T  I  N  N  Q  S  L  V  T  N  L  I :   L  N  E  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104863" stop="104683"/>
                    <exon start="104190" stop="104036"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PEEEQLRRKMNTDITASAKPEYPVVDRNPPFTKTVGNFNTLDYLRLTTITGISVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVAKAKYKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="104890" e_stop="104683"/>
            <exon e_start="104190" e_stop="103893"/>
            <exon e_start="103792" e_stop="103779"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.949"/>
          <exon-intron don_prob="0.000" acc_prob="0.960" e_score="1.000"/>
          <exon-only e_score="0.643"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="104890" e_stop="104683" e_length="208"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="104682" i_stop="104191" i_length="492"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="104190" e_stop="103893" e_length="298"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.960">
            <gDNA_intron_boundary i_start="103892" i_stop="103793" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="0.643">
            <gDNA_exon_boundary e_start="103792" e_stop="103779" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104890" stop="104683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104882" stop="104683"/>
              <exon start="104190" stop="103905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104880" stop="104683"/>
              <exon start="104190" stop="104002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104865" stop="104683"/>
              <exon start="104190" stop="103893"/>
              <exon start="103792" stop="103779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104858" stop="104683"/>
              <exon start="104190" stop="103905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421940" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104832" stop="104683"/>
              <exon start="104190" stop="103894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104787" stop="104683"/>
              <exon start="104190" stop="103896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720723" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG : GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTA : CTTAAATGAGAGAA</gDNA_template>
            <first_frame> T  G  V  S  A  A  G  K  *  P  E  E  E  Q  L  R  R  K  M  N  T  D  I  T  A  S  A  K  P  E  Y  P  V  V  D  R  N  P  P  F  T  K  T  V  G  N  F  N  T  L  D  Y  L  R  L  T  T  I  T  G  I  S  V  T  V  G  Y  L  S   : G  I  K  P  G  I  R  G  P  S  M  V  T  G  G  L  I  G  L  M  G  G  F  M  Y  A  Y  Q  N  S  A  G  R  L  M  G  F  F  P  N  E  G  E  V  A  K  A  K  Y  K  I  *  L  L  P  L  I  F  W  F  F  W  I  P  F  C  S  F  P  K  M  L  L  K  Q  W  A  F  S  L  L  M  R  T  L  L  K  V  I  P  L  I  I  S  L  W  L  P  T  Y :   L  N  E  R  </first_frame>
            <second_frame>  L  E  Y  P  P  P  A  S  D  Q  K  K  S  S  *  E  G  R  *  I  L  I  S  Q  H  R  Q  S  P  S  I  Q  L  *  I  E  T  H  R  L  L  K  P  S  V  I  S  T  H  S  I  T  S  G  S  P  P  S  P  G  F  L  S  P  S  D  T  S  P  :  E  *  S  Q  G  L  E  G  H  R  W  L  P  E  V  *  L  G  *  W  V  V  S  C  M  L  I  R  I  Q  L  A  G  S  W  V  S  S  Q  M  K  E  R  *  P  K  P  S  T  R  F  N  C  F  P  *  F  S  G  S  F  G  F  P  F  V  V  S  P  R  C  Y  *  N  S  G  H  S  L  F  S  *  E  L  C  *  K  *  Y  H  *  *  S  V  S  G  Y  Q  L   : T  *  M  R  E </second_frame>
            <third_frame>   W  S  I  R  R  R  Q  V  T  R  R  R  A  A  K  K  E  D  E  Y  *  Y  H  S  I  G  K  A  R  V  S  S  C  R  S  K  P  T  V  Y  *  N  R  R  *  F  Q  H  T  R  L  P  P  A  H  H  H  H  R  D  F  C  H  R  R  I  P  L  R :   N  K  A  R  D  *  R  A  I  D  G  Y  R  R  F  D  W  A  N  G  W  F  H  V  C  L  S  E  F  S  W  Q  A  H  G  F  L  P  K  *  R  R  G  S  Q  S  Q  V  Q  D  L  T  A  S  L  N  F  L  V  L  L  D  S  L  L  *  F  P  Q  D  V  I  K  T  V  G  I  L  S  S  H  E  N  F  V  E  S  N  T  I  N  N  Q  S  L  V  T  N  L  :  L  K  *  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104863" stop="104683"/>
                    <exon start="104190" stop="104036"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PEEEQLRRKMNTDITASAKPEYPVVDRNPPFTKTVGNFNTLDYLRLTTITGISVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVAKAKYKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="104890" e_stop="104683"/>
            <exon e_start="104190" e_stop="103892"/>
            <exon e_start="100609" e_stop="100527"/>
            <exon e_start="100244" e_stop="100213"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.995"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.585" acc_prob="0.000" e_score="0.530"/>
          <exon-only e_score="0.625"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="104890" e_stop="104683" e_length="208"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="104682" i_stop="104191" i_length="492"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="104190" e_stop="103892" e_length="299"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="103891" i_stop="100610" i_length="3282"/>
          </intron>
          <exon e_serial="3" e_score="0.530">
            <gDNA_exon_boundary e_start="100609" e_stop="100527" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.585" acc_prob="0.000">
            <gDNA_intron_boundary i_start="100526" i_stop="100245" i_length="282"/>
          </intron>
          <exon e_serial="4" e_score="0.625">
            <gDNA_exon_boundary e_start="100244" e_stop="100213" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104890" stop="104683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104887" stop="104683"/>
              <exon start="104190" stop="103892"/>
              <exon start="100609" stop="100527"/>
              <exon start="100244" stop="100213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104882" stop="104683"/>
              <exon start="104190" stop="103905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104880" stop="104683"/>
              <exon start="104190" stop="104002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104858" stop="104683"/>
              <exon start="104190" stop="103905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421940" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104832" stop="104683"/>
              <exon start="104190" stop="103894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104787" stop="104683"/>
              <exon start="104190" stop="103896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720723" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG : GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAA : AAAATAAAAATTAATTAAAAAAGAACTACAATATGAAGTCAAATAGACTATTATGATTGTACTCCCACCAAAAAGAATTAATG : TTTTTTTTTTTGATAATCTGAAGATATGGGAA</gDNA_template>
            <first_frame> T  G  V  S  A  A  G  K  *  P  E  E  E  Q  L  R  R  K  M  N  T  D  I  T  A  S  A  K  P  E  Y  P  V  V  D  R  N  P  P  F  T  K  T  V  G  N  F  N  T  L  D  Y  L  R  L  T  T  I  T  G  I  S  V  T  V  G  Y  L  S   : G  I  K  P  G  I  R  G  P  S  M  V  T  G  G  L  I  G  L  M  G  G  F  M  Y  A  Y  Q  N  S  A  G  R  L  M  G  F  F  P  N  E  G  E  V  A  K  A  K  Y  K  I  *  L  L  P  L  I  F  W  F  F  W  I  P  F  C  S  F  P  K  M  L  L  K  Q  W  A  F  S  L  L  M  R  T  L  L  K  V  I  P  L  I  I  S  L  W  L  P  T  *  :  K  I  K  I  N  *  K  R  T  T  I  *  S  Q  I  D  Y  Y  D  C  T  P  T  K  K  N  *  C :   F  F  F  *  *  S  E  D  M  G  </first_frame>
            <second_frame>  L  E  Y  P  P  P  A  S  D  Q  K  K  S  S  *  E  G  R  *  I  L  I  S  Q  H  R  Q  S  P  S  I  Q  L  *  I  E  T  H  R  L  L  K  P  S  V  I  S  T  H  S  I  T  S  G  S  P  P  S  P  G  F  L  S  P  S  D  T  S  P  :  E  *  S  Q  G  L  E  G  H  R  W  L  P  E  V  *  L  G  *  W  V  V  S  C  M  L  I  R  I  Q  L  A  G  S  W  V  S  S  Q  M  K  E  R  *  P  K  P  S  T  R  F  N  C  F  P  *  F  S  G  S  F  G  F  P  F  V  V  S  P  R  C  Y  *  N  S  G  H  S  L  F  S  *  E  L  C  *  K  *  Y  H  *  *  S  V  S  G  Y  Q  L  K :   K  *  K  L  I  K  K  E  L  Q  Y  E  V  K  *  T  I  M  I  V  L  P  P  K  R  I  N   : V  F  F  F  D  N  L  K  I  W  E </second_frame>
            <third_frame>   W  S  I  R  R  R  Q  V  T  R  R  R  A  A  K  K  E  D  E  Y  *  Y  H  S  I  G  K  A  R  V  S  S  C  R  S  K  P  T  V  Y  *  N  R  R  *  F  Q  H  T  R  L  P  P  A  H  H  H  H  R  D  F  C  H  R  R  I  P  L  R :   N  K  A  R  D  *  R  A  I  D  G  Y  R  R  F  D  W  A  N  G  W  F  H  V  C  L  S  E  F  S  W  Q  A  H  G  F  L  P  K  *  R  R  G  S  Q  S  Q  V  Q  D  L  T  A  S  L  N  F  L  V  L  L  D  S  L  L  *  F  P  Q  D  V  I  K  T  V  G  I  L  S  S  H  E  N  F  V  E  S  N  T  I  N  N  Q  S  L  V  T  N  L   : K  N  K  N  *  L  K  K  N  Y  N  M  K  S  N  R  L  L  *  L  Y  S  H  Q  K  E  L  M  :  F  F  F  L  I  I  *  R  Y  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104863" stop="104683"/>
                    <exon start="104190" stop="104036"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PEEEQLRRKMNTDITASAKPEYPVVDRNPPFTKTVGNFNTLDYLRLTTITGISVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVAKAKYKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="104924" e_stop="104683"/>
            <exon e_start="104190" e_stop="103905"/>
            <exon e_start="103792" e_stop="103757"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.950"/>
          <exon-intron don_prob="0.614" acc_prob="0.960" e_score="0.965"/>
          <exon-only e_score="0.389"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="104924" e_stop="104683" e_length="242"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="104682" i_stop="104191" i_length="492"/>
          </intron>
          <exon e_serial="2" e_score="0.965">
            <gDNA_exon_boundary e_start="104190" e_stop="103905" e_length="286"/>
          </exon>
          <intron i_serial="2" don_prob="0.614" acc_prob="0.960">
            <gDNA_intron_boundary i_start="103904" i_stop="103793" i_length="112"/>
          </intron>
          <exon e_serial="3" e_score="0.389">
            <gDNA_exon_boundary e_start="103792" e_stop="103757" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104924" stop="104683"/>
              <exon start="104190" stop="103905"/>
              <exon start="103792" stop="103757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104890" stop="104683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104882" stop="104683"/>
              <exon start="104190" stop="103905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104880" stop="104683"/>
              <exon start="104190" stop="104002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104858" stop="104683"/>
              <exon start="104190" stop="103905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421940" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACTGAACTTTGCATTTTCCGATCGTAAAATTCAACTGGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG : GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTG : CTTAAATGAGAGAATTGAGATTTATGTAGCCAACAT</gDNA_template>
            <first_frame> D  *  T  L  H  F  P  I  V  K  F  N  W  S  I  R  R  R  Q  V  T  R  R  R  A  A  K  K  E  D  E  Y  *  Y  H  S  I  G  K  A  R  V  S  S  C  R  S  K  P  T  V  Y  *  N  R  R  *  F  Q  H  T  R  L  P  P  A  H  H  H  H  R  D  F  C  H  R  R  I  P  L  R :   N  K  A  R  D  *  R  A  I  D  G  Y  R  R  F  D  W  A  N  G  W  F  H  V  C  L  S  E  F  S  W  Q  A  H  G  F  L  P  K  *  R  R  G  S  Q  S  Q  V  Q  D  L  T  A  S  L  N  F  L  V  L  L  D  S  L  L  *  F  P  Q  D  V  I  K  T  V  G  I  L  S  S  H  E  N  F  V  E  S  N  T  I  N  N  Q  S  L  :  L  K  *  E  N  *  D  L  C  S  Q  H </first_frame>
            <second_frame>  T  E  L  C  I  F  R  S  *  N  S  T  G  V  S  A  A  G  K  *  P  E  E  E  Q  L  R  R  K  M  N  T  D  I  T  A  S  A  K  P  E  Y  P  V  V  D  R  N  P  P  F  T  K  T  V  G  N  F  N  T  L  D  Y  L  R  L  T  T  I  T  G  I  S  V  T  V  G  Y  L  S   : G  I  K  P  G  I  R  G  P  S  M  V  T  G  G  L  I  G  L  M  G  G  F  M  Y  A  Y  Q  N  S  A  G  R  L  M  G  F  F  P  N  E  G  E  V  A  K  A  K  Y  K  I  *  L  L  P  L  I  F  W  F  F  W  I  P  F  C  S  F  P  K  M  L  L  K  Q  W  A  F  S  L  L  M  R  T  L  L  K  V  I  P  L  I  I  S  L  C :   L  N  E  R  I  E  I  Y  V  A  N   </second_frame>
            <third_frame>   L  N  F  A  F  S  D  R  K  I  Q  L  E  Y  P  P  P  A  S  D  Q  K  K  S  S  *  E  G  R  *  I  L  I  S  Q  H  R  Q  S  P  S  I  Q  L  *  I  E  T  H  R  L  L  K  P  S  V  I  S  T  H  S  I  T  S  G  S  P  P  S  P  G  F  L  S  P  S  D  T  S  P  :  E  *  S  Q  G  L  E  G  H  R  W  L  P  E  V  *  L  G  *  W  V  V  S  C  M  L  I  R  I  Q  L  A  G  S  W  V  S  S  Q  M  K  E  R  *  P  K  P  S  T  R  F  N  C  F  P  *  F  S  G  S  F  G  F  P  F  V  V  S  P  R  C  Y  *  N  S  G  H  S  L  F  S  *  E  L  C  *  K  *  Y  H  *  *  S  V  S   : A  *  M  R  E  L  R  F  M  *  P  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104863" stop="104683"/>
                    <exon start="104190" stop="104036"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PEEEQLRRKMNTDITASAKPEYPVVDRNPPFTKTVGNFNTLDYLRLTTITGISVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVAKAKYKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="125661" PGL_stop="121241"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125661" e_stop="125627"/>
            <exon e_start="124535" e_stop="124454"/>
            <exon e_start="122707" e_stop="122568"/>
            <exon e_start="122480" e_stop="122402"/>
            <exon e_start="122293" e_stop="122230"/>
            <exon e_start="121760" e_stop="121669"/>
            <exon e_start="121534" e_stop="121469"/>
            <exon e_start="121320" e_stop="121241"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.575" acc_prob="0.656" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="0.978"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="0.985"/>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="125661" e_stop="125627" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.986">
            <gDNA_intron_boundary i_start="125626" i_stop="124536" i_length="1091"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="124535" e_stop="124454" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="124453" i_stop="122708" i_length="1746"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="122707" e_stop="122568" e_length="140"/>
          </exon>
          <intron i_serial="3" don_prob="0.575" acc_prob="0.656">
            <gDNA_intron_boundary i_start="122567" i_stop="122481" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="122480" e_stop="122402" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.996">
            <gDNA_intron_boundary i_start="122401" i_stop="122294" i_length="108"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="122293" e_stop="122230" e_length="64"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="122229" i_stop="121761" i_length="469"/>
          </intron>
          <exon e_serial="6" e_score="0.978">
            <gDNA_exon_boundary e_start="121760" e_stop="121669" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="121668" i_stop="121535" i_length="134"/>
          </intron>
          <exon e_serial="7" e_score="0.985">
            <gDNA_exon_boundary e_start="121534" e_stop="121469" e_length="66"/>
          </exon>
          <intron i_serial="7" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="121468" i_stop="121321" i_length="148"/>
          </intron>
          <exon e_serial="8" e_score="0.925">
            <gDNA_exon_boundary e_start="121320" e_stop="121241" e_length="80"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125661" stop="125627"/>
              <exon start="124535" stop="124454"/>
              <exon start="122707" stop="122568"/>
              <exon start="122480" stop="122402"/>
              <exon start="122293" stop="122230"/>
              <exon start="121760" stop="121669"/>
              <exon start="121534" stop="121469"/>
              <exon start="121320" stop="121241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125661" stop="125627"/>
              <exon start="124535" stop="124454"/>
              <exon start="122707" stop="122568"/>
              <exon start="122480" stop="122402"/>
              <exon start="122293" stop="122230"/>
              <exon start="121760" stop="121740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271173" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAATGCTAAAACTCCTCGGCTTGAAAGGAAGAAG : TGAACCATATGTCACTGAGGATGAATTGAAGTTGATGCTGCGTGGGGCGGAGTTAAGTGGCGCAATTGAGGAGGAAGAGCAG : GATATGATTGAAAATGTGTTGGAGATTAAAGACACTCATGTCAGGGAGGTAATGACACCTCTTGTTGATGTTGTTGCAATCGATGCCAGTGCAACGTTAGTTGATTTCCATAGTTTGTGGGTGACACATCAGTACTCCAG : GGTGCCCGTTTTTGAGCAACGTATAGATAATATTGTTGGCATTGCATATGCCATGGATCTCCTAGATTATGTACAAAAG : GGAGAACTGCTGGAAAGTTCTATTGTGGGAGACATTGCACATAAACCTGCATACTTTGTTCCCG : ATTCTATGTCAGTGTGGAACCTTCTTAGAGAGTTCCGCATCAGAAAGGTACACATGGCTGTTGTTCTTAATGAATATGGAGGAACCATTGGA : ATTGTAACCCTTGAAGATGTGGTCGAGGAAATTGTTGGCGAAATCTTTGACGAAAATGATTCAAAA : GAGGAAATCCAAGAAAAAAACTGGCTATATTGTCATGCGGGCTGAGGGAATATACGATGTTGATGCAAATACCTCCATTG</gDNA_template>
            <first_frame> G  M  L  K  L  L  G  L  K  G  R  S :   E  P  Y  V  T  E  D  E  L  K  L  M  L  R  G  A  E  L  S  G  A  I  E  E  E  E  Q  :  D  M  I  E  N  V  L  E  I  K  D  T  H  V  R  E  V  M  T  P  L  V  D  V  V  A  I  D  A  S  A  T  L  V  D  F  H  S  L  W  V  T  H  Q  Y  S  R :   V  P  V  F  E  Q  R  I  D  N  I  V  G  I  A  Y  A  M  D  L  L  D  Y  V  Q  K  :  G  E  L  L  E  S  S  I  V  G  D  I  A  H  K  P  A  Y  F  V  P   : D  S  M  S  V  W  N  L  L  R  E  F  R  I  R  K  V  H  M  A  V  V  L  N  E  Y  G  G  T  I  G  :  I  V  T  L  E  D  V  V  E  E  I  V  G  E  I  F  D  E  N  D  S  K  :  E  E  I  Q  E  K  N  W  L  Y  C  H  A  G  *  G  N  I  R  C  *  C  K  Y  L  H   </first_frame>
            <second_frame>  E  C  *  N  S  S  A  *  K  E  E   : V  N  H  M  S  L  R  M  N  *  S  *  C  C  V  G  R  S  *  V  A  Q  L  R  R  K  S  R :   I  *  L  K  M  C  W  R  L  K  T  L  M  S  G  R  *  *  H  L  L  L  M  L  L  Q  S  M  P  V  Q  R  *  L  I  S  I  V  C  G  *  H  I  S  T  P   : G  C  P  F  L  S  N  V  *  I  I  L  L  A  L  H  M  P  W  I  S  *  I  M  Y  K  R :   E  N  C  W  K  V  L  L  W  E  T  L  H  I  N  L  H  T  L  F  P  :  I  L  C  Q  C  G  T  F  L  E  S  S  A  S  E  R  Y  T  W  L  L  F  L  M  N  M  E  E  P  L  E :   L  *  P  L  K  M  W  S  R  K  L  L  A  K  S  L  T  K  M  I  Q  K :   R  K  S  K  K  K  T  G  Y  I  V  M  R  A  E  G  I  Y  D  V  D  A  N  T  S  I  </second_frame>
            <third_frame>   N  A  K  T  P  R  L  E  R  K  K  :  *  T  I  C  H  *  G  *  I  E  V  D  A  A  W  G  G  V  K  W  R  N  *  G  G  R  A   : G  Y  D  *  K  C  V  G  D  *  R  H  S  C  Q  G  G  N  D  T  S  C  *  C  C  C  N  R  C  Q  C  N  V  S  *  F  P  *  F  V  G  D  T  S  V  L  Q  :  G  A  R  F  *  A  T  Y  R  *  Y  C  W  H  C  I  C  H  G  S  P  R  L  C  T  K   : G  R  T  A  G  K  F  Y  C  G  R  H  C  T  *  T  C  I  L  C  S  R :   F  Y  V  S  V  E  P  S  *  R  V  P  H  Q  K  G  T  H  G  C  C  S  *  *  I  W  R  N  H  W   : N  C  N  P  *  R  C  G  R  G  N  C  W  R  N  L  *  R  K  *  F  K   : R  G  N  P  R  K  K  L  A  I  L  S  C  G  L  R  E  Y  T  M  L  M  Q  I  P  P  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125661" stop="125627"/>
                    <exon start="124535" stop="124454"/>
                    <exon start="122707" stop="122568"/>
                    <exon start="122480" stop="122402"/>
                    <exon start="122293" stop="122230"/>
                    <exon start="121760" stop="121669"/>
                    <exon start="121534" stop="121469"/>
                    <exon start="121320" stop="121276"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMLKLLGLKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDASATLVDFHSLWVTHQYSRVPVFEQRIDNIVGIAYAMDLLDYVQKGELLESSIVGDIAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTIGIVTLEDVVEEIVGEIFDENDSKEEIQEKNWLYCHAG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="128564" PGL_stop="127884"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="128564" e_stop="127884"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="128564" e_stop="127884" e_length="681"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128564" stop="127884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455174" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAGGTGAAAAAACTGAGGCAGGTGAAGGCTTAAACGCAATGAGCTCTGCCATCTGCTCAATTTCATCTCTACAAAATCTTCAATTCTTCAAAAACCCAAAAATCTTTTTGCTTTGTTTTGGTATTTGAGCTGTTTAATTTTGCTAAATTTCCATGGATGCTGCAGTTTTTAATCCATCTTCATTCATTACTACTTGTAATAAACGTTCGTATCCAGGCGTGTATACTCGTCAATTAGGAAAACCCATTAAGCTATCTGCTAATAACCTTCGTTACTCATGTGGGGTTGCGTCAAATTTTGTTCTTCCTTACAATTCGAGGTGTAATTTTAGGAATGGGATTTGTTTATCTGTTAAAGGGGGTAAAGGGGAGTTTCAGAATGCTGAAGATTCATGCTTGAAAATACCATTTATGCATTTCCTGCTGAAAAAAGGGGTGATTTTGGTAGGGGTGATATGTGGGTTTTTTTTAATTGGGTGCAGAAGGGTGTTTGCTGTTGAAGGGGTTTTGAATGGAGGATATGGTGTTTTAGAGCAGGGTTTGGTTTTGTTGAGGAGTTATTGGCCTACGGTATTGTTGGTTCTCAGGATGTTTAAAGAACAAGGTTTGATTCTTGCGGCGCTTCTTAGTCTTTCTGCATTTTTTTCGATGGCTGAGACATCAATAACTACGCTTTGGC</gDNA_template>
            <first_frame> K  K  V  K  K  L  R  Q  V  K  A  *  T  Q  *  A  L  P  S  A  Q  F  H  L  Y  K  I  F  N  S  S  K  T  Q  K  S  F  C  F  V  L  V  F  E  L  F  N  F  A  K  F  P  W  M  L  Q  F  L  I  H  L  H  S  L  L  L  V  I  N  V  R  I  Q  A  C  I  L  V  N  *  E  N  P  L  S  Y  L  L  I  T  F  V  T  H  V  G  L  R  Q  I  L  F  F  L  T  I  R  G  V  I  L  G  M  G  F  V  Y  L  L  K  G  V  K  G  S  F  R  M  L  K  I  H  A  *  K  Y  H  L  C  I  S  C  *  K  K  G  *  F  W  *  G  *  Y  V  G  F  F  *  L  G  A  E  G  C  L  L  L  K  G  F  *  M  E  D  M  V  F  *  S  R  V  W  F  C  *  G  V  I  G  L  R  Y  C  W  F  S  G  C  L  K  N  K  V  *  F  L  R  R  F  L  V  F  L  H  F  F  R  W  L  R  H  Q  *  L  R  F  G </first_frame>
            <second_frame>  K  R  *  K  N  *  G  R  *  R  L  K  R  N  E  L  C  H  L  L  N  F  I  S  T  K  S  S  I  L  Q  K  P  K  N  L  F  A  L  F  W  Y  L  S  C  L  I  L  L  N  F  H  G  C  C  S  F  *  S  I  F  I  H  Y  Y  L  *  *  T  F  V  S  R  R  V  Y  S  S  I  R  K  T  H  *  A  I  C  *  *  P  S  L  L  M  W  G  C  V  K  F  C  S  S  L  Q  F  E  V  *  F  *  E  W  D  L  F  I  C  *  R  G  *  R  G  V  S  E  C  *  R  F  M  L  E  N  T  I  Y  A  F  P  A  E  K  R  G  D  F  G  R  G  D  M  W  V  F  F  N  W  V  Q  K  G  V  C  C  *  R  G  F  E  W  R  I  W  C  F  R  A  G  F  G  F  V  E  E  L  L  A  Y  G  I  V  G  S  Q  D  V  *  R  T  R  F  D  S  C  G  A  S  *  S  F  C  I  F  F  D  G  *  D  I  N  N  Y  A  L   </second_frame>
            <third_frame>   K  G  E  K  T  E  A  G  E  G  L  N  A  M  S  S  A  I  C  S  I  S  S  L  Q  N  L  Q  F  F  K  N  P  K  I  F  L  L  C  F  G  I  *  A  V  *  F  C  *  I  S  M  D  A  A  V  F  N  P  S  S  F  I  T  T  C  N  K  R  S  Y  P  G  V  Y  T  R  Q  L  G  K  P  I  K  L  S  A  N  N  L  R  Y  S  C  G  V  A  S  N  F  V  L  P  Y  N  S  R  C  N  F  R  N  G  I  C  L  S  V  K  G  G  K  G  E  F  Q  N  A  E  D  S  C  L  K  I  P  F  M  H  F  L  L  K  K  G  V  I  L  V  G  V  I  C  G  F  F  L  I  G  C  R  R  V  F  A  V  E  G  V  L  N  G  G  Y  G  V  L  E  Q  G  L  V  L  L  R  S  Y  W  P  T  V  L  L  V  L  R  M  F  K  E  Q  G  L  I  L  A  A  L  L  S  L  S  A  F  F  S  M  A  E  T  S  I  T  T  L  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128415" stop="127885"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISMDAAVFNPSSFITTCNKRSYPGVYTRQLGKPIKLSANNLRYSCGVASNFVLPYNSRCNFRNGICLSVKGGKGEFQNAEDSCLKIPFMHFLLKKGVILVGVICGFFLIGCRRVFAVEGVLNGGYGVLEQGLVLLRSYWPTVLLVLRMFKEQGLILAALLSLSAFFSMAETSITTLW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="-" PGL_start="130645" PGL_stop="129097"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="130645" e_stop="130608"/>
            <exon e_start="130518" e_stop="130213"/>
            <exon e_start="130116" e_stop="130053"/>
            <exon e_start="129970" e_stop="129731"/>
            <exon e_start="129648" e_stop="129097"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.582" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="130645" e_stop="130608" e_length="38"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="130607" i_stop="130519" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="130518" e_stop="130213" e_length="306"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="130212" i_stop="130117" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="130116" e_stop="130053" e_length="64"/>
          </exon>
          <intron i_serial="3" don_prob="0.948" acc_prob="0.998">
            <gDNA_intron_boundary i_start="130052" i_stop="129971" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="129970" e_stop="129731" e_length="240"/>
          </exon>
          <intron i_serial="4" don_prob="0.582" acc_prob="0.998">
            <gDNA_intron_boundary i_start="129730" i_stop="129649" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="129648" e_stop="129097" e_length="552"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130645" stop="130608"/>
              <exon start="130518" stop="130213"/>
              <exon start="130116" stop="130053"/>
              <exon start="129970" stop="129956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130642" stop="130608"/>
              <exon start="130518" stop="130213"/>
              <exon start="130116" stop="130053"/>
              <exon start="129970" stop="129731"/>
              <exon start="129648" stop="129574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129964" stop="129731"/>
              <exon start="129648" stop="129168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380067" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129914" stop="129731"/>
              <exon start="129648" stop="129158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213980" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129830" stop="129731"/>
              <exon start="129648" stop="129110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379181" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129829" stop="129731"/>
              <exon start="129648" stop="129097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129829" stop="129731"/>
              <exon start="129648" stop="129262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129829" stop="129731"/>
              <exon start="129648" stop="129449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375381" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCCATCTCGTGGAGAGGTTGAGTTCAACAATCTTCAG : GTCCGATATGCTCCACACATGCCTCTCGTGTTACGAGGACTTACATGCACTTTCTTTGGTGGGAAGAAGACTGGAATTGTTGGTAGGACAGGCAGTGGTAAATCAACTTTAATACAGACCCTTTTCCGCATAGTTGATCCTGTTGTTGGACAAATAAAGATAGATGGTACCAACATCTCCACAATTGGTCTGCATGATCTGCGGTCTAGATTGAGTATCATTCCGCAGGATCCGACTATGTTTGAGGGAACTGTACGCAGCAACCTAGATCCGCTCGAAGAGCATTCAGATGATCAAATTTGGGAG : GCGCTGGACAAATGTCAACTAGGAGACGAAGTTAGGAAGAAGGAAGGCAAGCTATATTCTACAG : TATCTGAGAATGGAGAGAACTGGAGCGTAGGCCAAAGGCAGCTGGTCTGTCTTGGCCGCGTGCTACTCAAAAAAAGCAAGGTCCTTGTCCTAGACGAGGCTACAGCATCTGTTGACACTGCAACTGACAATCTAATTCAGCAAACTCTGAGGCTGCACTTCACTGATTCCACTGTTATAACCATCGCTCATAGGATAACATCTGTTCTTGATAGTGACATGGTCCTACTATTAGAACACG : GGCTGATTGCTGAATATGACACTCCAGGCAAGTTATTAGAGAACGAATCCTCGTTGTTTGCCAAGCTCGTGGCTGAGTATAGTATGAGATCAAATTCAAGTTTTGAGAATGCCTCAGACACATGAATCTTTCATTGACCACGTTATACGATGATGATGATGAAAACTAGTACACATGAATCTCAGACACTAACACTCTTTTGAGTTTCCATCCGTGGACGATAGAGCTTGAACAAGAACCCGCGAAATGCAGCTCATTGCATGTGACTTGAGGGAAACTGCAACAATCTTATGGCAGTGAAAGAAGTTCATCTATTTGTGCAATATTGATAGTGAAATGGCATCTGTTTTCTTTAGACTTTTTGATGTGAAAAAATGTTTTAAGTATTTGTTTACCAATAATTTGAATGTATGTTGAGTCAATTGATTAGTTAGTTAAGAGTGCACGGATTTTGTTCCTTATTGTAAAAGTAGTAAAACTTTTTGTATTGAGTTGGAAGTGAACTTACAAGTGTTTGAATTTTTCTCTACAAGCAAAACTGAAATACTTTTA</gDNA_template>
            <first_frame> G  H  L  V  E  R  L  S  S  T  I  F  R :   S  D  M  L  H  T  C  L  S  C  Y  E  D  L  H  A  L  S  L  V  G  R  R  L  E  L  L  V  G  Q  A  V  V  N  Q  L  *  Y  R  P  F  S  A  *  L  I  L  L  L  D  K  *  R  *  M  V  P  T  S  P  Q  L  V  C  M  I  C  G  L  D  *  V  S  F  R  R  I  R  L  C  L  R  E  L  Y  A  A  T  *  I  R  S  K  S  I  Q  M  I  K  F  G  R :   R  W  T  N  V  N  *  E  T  K  L  G  R  R  K  A  S  Y  I  L  Q  :  Y  L  R  M  E  R  T  G  A  *  A  K  G  S  W  S  V  L  A  A  C  Y  S  K  K  A  R  S  L  S  *  T  R  L  Q  H  L  L  T  L  Q  L  T  I  *  F  S  K  L  *  G  C  T  S  L  I  P  L  L  *  P  S  L  I  G  *  H  L  F  L  I  V  T  W  S  Y  Y  *  N  T  :  G  *  L  L  N  M  T  L  Q  A  S  Y  *  R  T  N  P  R  C  L  P  S  S  W  L  S  I  V  *  D  Q  I  Q  V  L  R  M  P  Q  T  H  E  S  F  I  D  H  V  I  R  *  *  *  *  K  L  V  H  M  N  L  R  H  *  H  S  F  E  F  P  S  V  D  D  R  A  *  T  R  T  R  E  M  Q  L  I  A  C  D  L  R  E  T  A  T  I  L  W  Q  *  K  K  F  I  Y  L  C  N  I  D  S  E  M  A  S  V  F  F  R  L  F  D  V  K  K  C  F  K  Y  L  F  T  N  N  L  N  V  C  *  V  N  *  L  V  S  *  E  C  T  D  F  V  P  Y  C  K  S  S  K  T  F  C  I  E  L  E  V  N  L  Q  V  F  E  F  F  S  T  S  K  T  E  I  L  L </first_frame>
            <second_frame>  A  I  S  W  R  G  *  V  Q  Q  S  S   : G  P  I  C  S  T  H  A  S  R  V  T  R  T  Y  M  H  F  L  W  W  E  E  D  W  N  C  W  *  D  R  Q  W  *  I  N  F  N  T  D  P  F  P  H  S  *  S  C  C  W  T  N  K  D  R  W  Y  Q  H  L  H  N  W  S  A  *  S  A  V  *  I  E  Y  H  S  A  G  S  D  Y  V  *  G  N  C  T  Q  Q  P  R  S  A  R  R  A  F  R  *  S  N  L  G   : G  A  G  Q  M  S  T  R  R  R  S  *  E  E  G  R  Q  A  I  F  Y  S :   I  *  E  W  R  E  L  E  R  R  P  K  A  A  G  L  S  W  P  R  A  T  Q  K  K  Q  G  P  C  P  R  R  G  Y  S  I  C  *  H  C  N  *  Q  S  N  S  A  N  S  E  A  A  L  H  *  F  H  C  Y  N  H  R  S  *  D  N  I  C  S  *  *  *  H  G  P  T  I  R  T  R :   A  D  C  *  I  *  H  S  R  Q  V  I  R  E  R  I  L  V  V  C  Q  A  R  G  *  V  *  Y  E  I  K  F  K  F  *  E  C  L  R  H  M  N  L  S  L  T  T  L  Y  D  D  D  D  E  N  *  Y  T  *  I  S  D  T  N  T  L  L  S  F  H  P  W  T  I  E  L  E  Q  E  P  A  K  C  S  S  L  H  V  T  *  G  K  L  Q  Q  S  Y  G  S  E  R  S  S  S  I  C  A  I  L  I  V  K  W  H  L  F  S  L  D  F  L  M  *  K  N  V  L  S  I  C  L  P  I  I  *  M  Y  V  E  S  I  D  *  L  V  K  S  A  R  I  L  F  L  I  V  K  V  V  K  L  F  V  L  S  W  K  *  T  Y  K  C  L  N  F  S  L  Q  A  K  L  K  Y  F   </second_frame>
            <third_frame>   P  S  R  G  E  V  E  F  N  N  L  Q  :  V  R  Y  A  P  H  M  P  L  V  L  R  G  L  T  C  T  F  F  G  G  K  K  T  G  I  V  G  R  T  G  S  G  K  S  T  L  I  Q  T  L  F  R  I  V  D  P  V  V  G  Q  I  K  I  D  G  T  N  I  S  T  I  G  L  H  D  L  R  S  R  L  S  I  I  P  Q  D  P  T  M  F  E  G  T  V  R  S  N  L  D  P  L  E  E  H  S  D  D  Q  I  W  E  :  A  L  D  K  C  Q  L  G  D  E  V  R  K  K  E  G  K  L  Y  S  T   : V  S  E  N  G  E  N  W  S  V  G  Q  R  Q  L  V  C  L  G  R  V  L  L  K  K  S  K  V  L  V  L  D  E  A  T  A  S  V  D  T  A  T  D  N  L  I  Q  Q  T  L  R  L  H  F  T  D  S  T  V  I  T  I  A  H  R  I  T  S  V  L  D  S  D  M  V  L  L  L  E  H   : G  L  I  A  E  Y  D  T  P  G  K  L  L  E  N  E  S  S  L  F  A  K  L  V  A  E  Y  S  M  R  S  N  S  S  F  E  N  A  S  D  T  *  I  F  H  *  P  R  Y  T  M  M  M  M  K  T  S  T  H  E  S  Q  T  L  T  L  F  *  V  S  I  R  G  R  *  S  L  N  K  N  P  R  N  A  A  H  C  M  *  L  E  G  N  C  N  N  L  M  A  V  K  E  V  H  L  F  V  Q  Y  *  *  *  N  G  I  C  F  L  *  T  F  *  C  E  K  M  F  *  V  F  V  Y  Q  *  F  E  C  M  L  S  Q  L  I  S  *  L  R  V  H  G  F  C  S  L  L  *  K  *  *  N  F  L  Y  *  V  G  S  E  L  T  S  V  *  I  F  L  Y  K  Q  N  *  N  T  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="130643" stop="130608"/>
                    <exon start="130518" stop="130213"/>
                    <exon start="130116" stop="130053"/>
                    <exon start="129970" stop="129731"/>
                    <exon start="129648" stop="129524"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSRGEVEFNNLQVRYAPHMPLVLRGLTCTFFGGKKTGIVGRTGSGKSTLIQTLFRIVDPVVGQIKIDGTNISTIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEHSDDQIWEALDKCQLGDEVRKKEGKLYSTVSENGENWSVGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRLHFTDSTVITIAHRITSVLDSDMVLLLEHGLIAEYDTPGKLLENESSLFAKLVAEYSMRSNSSFENASDT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="130637" e_stop="130317"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="130637" e_stop="130317" e_length="321"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130637" stop="130317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443089" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGTGGAGAGGTTGAGTTCAACAATCTTCAGGTAAATTGAGTTGTTCTCTGGTATTATGCAGGTAGAGTGCATTATTGTTGATTCATTGTATGTGTTGATAAATCTGAAAAATTTTATAGGTCCGATATGCTCCACACATGCCTCTCGTGTTACGAGGACTTACATGCACTTTCTTTGGTGGGAAGAAGACTGGAATTGTTGGTAGGACAGGCAGTGGTAAATCAACTTTAATACAGACCCTTTTCCGCATAGTTGATCCTGTTGTTGGACAAATAAAGATAGATGGTACCAACATCTCCACAATTGGTCTGCATGATCTGC</gDNA_template>
            <first_frame> R  G  E  V  E  F  N  N  L  Q  V  N  *  V  V  L  W  Y  Y  A  G  R  V  H  Y  C  *  F  I  V  C  V  D  K  S  E  K  F  Y  R  S  D  M  L  H  T  C  L  S  C  Y  E  D  L  H  A  L  S  L  V  G  R  R  L  E  L  L  V  G  Q  A  V  V  N  Q  L  *  Y  R  P  F  S  A  *  L  I  L  L  L  D  K  *  R  *  M  V  P  T  S  P  Q  L  V  C  M  I  C </first_frame>
            <second_frame>  V  E  R  L  S  S  T  I  F  R  *  I  E  L  F  S  G  I  M  Q  V  E  C  I  I  V  D  S  L  Y  V  L  I  N  L  K  N  F  I  G  P  I  C  S  T  H  A  S  R  V  T  R  T  Y  M  H  F  L  W  W  E  E  D  W  N  C  W  *  D  R  Q  W  *  I  N  F  N  T  D  P  F  P  H  S  *  S  C  C  W  T  N  K  D  R  W  Y  Q  H  L  H  N  W  S  A  *  S   </second_frame>
            <third_frame>   W  R  G  *  V  Q  Q  S  S  G  K  L  S  C  S  L  V  L  C  R  *  S  A  L  L  L  I  H  C  M  C  *  *  I  *  K  I  L  *  V  R  Y  A  P  H  M  P  L  V  L  R  G  L  T  C  T  F  F  G  G  K  K  T  G  I  V  G  R  T  G  S  G  K  S  T  L  I  Q  T  L  F  R  I  V  D  P  V  V  G  Q  I  K  I  D  G  T  N  I  S  T  I  G  L  H  D  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="130518" stop="130318"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRYAPHMPLVLRGLTCTFFGGKKTGIVGRTGSGKSTLIQTLFRIVDPVVGQIKIDGTNISTIGLHDL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="-" PGL_start="131401" PGL_stop="130700"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="131401" e_stop="131321"/>
            <exon e_start="131220" e_stop="130926"/>
            <exon e_start="130822" e_stop="130700"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.847" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="131401" e_stop="131321" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.847" acc_prob="0.999">
            <gDNA_intron_boundary i_start="131320" i_stop="131221" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="131220" e_stop="130926" e_length="295"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.969">
            <gDNA_intron_boundary i_start="130925" i_stop="130823" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="130822" e_stop="130700" e_length="123"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131401" stop="131321"/>
              <exon start="131220" stop="130926"/>
              <exon start="130822" stop="130700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206721" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCATTGCAGTAATGTCACAAGTCGCATGGCAGATCTTCATAGTCTTTATCCCAGTCATTGCAATTTGCATTTGGTTGGAG : CAATATTACATCCCTGCAGCACGAGAACTGGCACGTCTAAATGGGACATGCAAAGCTCCAGTAATACAGCATTTTGCTGAAACAATTTCAGGATCAAGCACAATTCGAAGTTTCGATCAAGAATCTAGATTCCAGGATGCAAGCATGAGATTAATAGACAATTATTCTCGGCCTAAGTTTCACACAGCTGCTGCGATGGAGTGGCTTTGCATGCGTTTGGATATGTTATCTCTGATTACTTTTGCTTTCGCGTTGATTTTCTTGATCTCTCTTCCTGTTGGAACAATCGATCCAA : GTGTTGCTGGCTTAGCTGTTACATATGGACTTAATCTAAACGTACTGCAAGCTTGGGTTGTATGGAATCTTTGTATGATGGAAAATAAAATTATTTCCGTCGAAAGAATACTTCAGTATGCTG</gDNA_template>
            <first_frame> I  I  A  V  M  S  Q  V  A  W  Q  I  F  I  V  F  I  P  V  I  A  I  C  I  W  L  E  :  Q  Y  Y  I  P  A  A  R  E  L  A  R  L  N  G  T  C  K  A  P  V  I  Q  H  F  A  E  T  I  S  G  S  S  T  I  R  S  F  D  Q  E  S  R  F  Q  D  A  S  M  R  L  I  D  N  Y  S  R  P  K  F  H  T  A  A  A  M  E  W  L  C  M  R  L  D  M  L  S  L  I  T  F  A  F  A  L  I  F  L  I  S  L  P  V  G  T  I  D  P   : S  V  A  G  L  A  V  T  Y  G  L  N  L  N  V  L  Q  A  W  V  V  W  N  L  C  M  M  E  N  K  I  I  S  V  E  R  I  L  Q  Y  A  </first_frame>
            <second_frame>  S  L  Q  *  C  H  K  S  H  G  R  S  S  *  S  L  S  Q  S  L  Q  F  A  F  G  W  S :   N  I  T  S  L  Q  H  E  N  W  H  V  *  M  G  H  A  K  L  Q  *  Y  S  I  L  L  K  Q  F  Q  D  Q  A  Q  F  E  V  S  I  K  N  L  D  S  R  M  Q  A  *  D  *  *  T  I  I  L  G  L  S  F  T  Q  L  L  R  W  S  G  F  A  C  V  W  I  C  Y  L  *  L  L  L  L  S  R  *  F  S  *  S  L  F  L  L  E  Q  S  I  Q  :  V  L  L  A  *  L  L  H  M  D  L  I  *  T  Y  C  K  L  G  L  Y  G  I  F  V  *  W  K  I  K  L  F  P  S  K  E  Y  F  S  M  L </second_frame>
            <third_frame>   H  C  S  N  V  T  S  R  M  A  D  L  H  S  L  Y  P  S  H  C  N  L  H  L  V  G   : A  I  L  H  P  C  S  T  R  T  G  T  S  K  W  D  M  Q  S  S  S  N  T  A  F  C  *  N  N  F  R  I  K  H  N  S  K  F  R  S  R  I  *  I  P  G  C  K  H  E  I  N  R  Q  L  F  S  A  *  V  S  H  S  C  C  D  G  V  A  L  H  A  F  G  Y  V  I  S  D  Y  F  C  F  R  V  D  F  L  D  L  S  S  C  W  N  N  R  S  K :   C  C  W  L  S  C  Y  I  W  T  *  S  K  R  T  A  S  L  G  C  M  E  S  L  Y  D  G  K  *  N  Y  F  R  R  K  N  T  S  V  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131401" stop="131321"/>
                    <exon start="131220" stop="130926"/>
                    <exon start="130822" stop="130701"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIAVMSQVAWQIFIVFIPVIAICIWLEQYYIPAARELARLNGTCKAPVIQHFAETISGSSTIRSFDQESRFQDASMRLIDNYSRPKFHTAAAMEWLCMRLDMLSLITFAFALIFLISLPVGTIDPSVAGLAVTYGLNLNVLQAWVVWNLCMMENKIISVERILQYA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 635 chains have been computed
$ 
$ memory statistics:
$ 1201200 bytes spliced alignments in total
$ 288 spliced alignments have been stored
$ 4170 bytes was the average size of a spliced alignment
$ 45992 bytes predicted gene locations in total
$ 26 predicted gene locations have been stored
$ 1768 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 878 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-22 17:06:07
-->
