<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-07 06:02:04"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0184E04-A7BXB/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0184E04-A7BXB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-A7BXB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8273-2" ref_strand="+" ref_description="SGN-M8273-2 C2_At4g16450-2 [cosii_markers]">
      <seq>ggagtatccgccgccggcaagtgaccagaagaagagcagctaagaaggaagatgaatactgatatcacagcatcggcaaagcccgagtatccagttgtagatcgaaacccaccgtttactaaaaccgtcggtaatttcaacacactcgattacctccggctcaccaccatcaccgggatttctgtcaccgtcggatacctctccggaataaagccagggattagagggccatcgatggttaccggaggtttgattgggctaatgggtggtttcatgtatgcttatcagaattcagctggcaggctcatgggtttcttcccaaatgaaggagaggtagccaaagccaagtacaagatttaactgcttcccttaattttctggttcttttggattcccttttgtagtttccccaagatgttattaaaacagtgggcattctctcttctcatgagaactttgttgaaagtaataccattaataatcagtctctggttaccaacttaatatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-A7BXB/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="30463" stop="28863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30163" g_stop="29959" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29958" i_stop="29467" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29466" g_stop="29167" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="505" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29166" i_stop="29069" i_length="98">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29068" g_stop="29055" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="519" r_length="14" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-M8273-2" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8273-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30163" e_stop="29959"/>
          <exon e_start="29466" e_stop="29167"/>
          <exon e_start="29068" e_stop="29055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCGGTAACTTCTCTATCCTTTACTGTTATCATTCATTCGATTTACTGAAGCTTAAATTGTAAATCTGTTTGGATTTGTCATTTGGATTACACTTTTTATGGAGCCGGGTAGTGCTGAGGGGTTTATCCGATTCTCCTTCGGTGGAAAGTCATATAATTTATACATGGTATATTAGATGTTGAAGCCCTTTAGCTTATTCGTGAGTTTAGTTCTTGGTATTTTGAATCACTTAGTGAAAATTCTTGTTACGTCACTGTAATTATATTTTGGGAAGGAACTAGAAGGTAGGAAGCTGGTTTGACAGAATTCAGTAGTTTTGGTTCAAATCATATATTTATCTTAAGAAATTTATGTAGACATTATTAGTTTGGAATCAGTAATTCAAAAGGAGTATAATCCTGAACCTGTAAGCTTCAAATTCAAATCCTAGCTCAGCTTGTGCTAACATAAGCAAGTTATCTCCTTTGTTATTGATAAATTTTGGATTTTGGGCAGGAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAATATGATTTCTTGTGTTGCGATGAATCATGTATTATTGTTACTTGCTAATAATGATGTGTTGACTATGCATTATTTAGTATGATAATGTTTTGAAATCAGCTTAAATGAGAGAA</genome_strand>
        <mrna_strand>GGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAAT..................................................................................................ATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-A7BXB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8273-3" ref_strand="+" ref_description="SGN-M8273-3 C2_At4g16450-3 [cosii_markers]">
      <seq>cttggagtattccgccgccggcaactgaccagaagaagaagaaggaggaaaatgaacacagatatcacagcatcggcaaagcccgaatatccagttgtagatcgaaacccaccgtttactaaaaccgtcggtaatttcaacacactcgattacctccggctcaccaccatcaccggaatttctgtcaccgtcggatacctctccggaataaagccagggattagagggccatcgatggttaccggaggtttgattgggctaatgggtggtttcatgtatgcttaccagaattcagctggcaggctcatgggtttcttcccaaatgaaggagaggtagccaaagccaagtacaagatttaactgcttccctttaattttctggttcttttggattcccttttgtagtttccccgaaatgttatgaaaacagtgggcatttctctcttctcatgagaactttgttgaaagtaatatctttaataatcagtctgtggttaccaacttattacgtttgcttgttttgctatgaatcatgtattattgtgacttgctaataatgatgagttgacaatgcattatttagtaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-A7BXB/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="30422" stop="28783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30166" g_stop="29959" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29958" i_stop="29467" i_length="492">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29466" g_stop="29083" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="591" r_length="386" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-M8273-3" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8273-3" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30166" e_stop="29959"/>
          <exon e_start="29466" e_stop="29083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGGAGTA-TCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCGGTAACTTCTCTATCCTTTACTGTTATCATTCATTCGATTTACTGAAGCTTAAATTGTAAATCTGTTTGGATTTGTCATTTGGATTACACTTTTTATGGAGCCGGGTAGTGCTGAGGGGTTTATCCGATTCTCCTTCGGTGGAAAGTCATATAATTTATACATGGTATATTAGATGTTGAAGCCCTTTAGCTTATTCGTGAGTTTAGTTCTTGGTATTTTGAATCACTTAGTGAAAATTCTTGTTACGTCACTGTAATTATATTTTGGGAAGGAACTAGAAGGTAGGAAGCTGGTTTGACAGAATTCAGTAGTTTTGGTTCAAATCATATATTTATCTTAAGAAATTTATGTAGACATTATTAGTTTGGAATCAGTAATTCAAAAGGAGTATAATCCTGAACCTGTAAGCTTCAAATTCAAATCCTAGCTCAGCTTGTGCTAACATAAGCAAGTTATCTCCTTTGTTATTGATAAATTTTGGATTTTGGGCAGGAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCC-TTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCA-TTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAATATGATTTCTTGTGTTGCGATGAATCATGTATTATTGTTACTTGCTAATAATGATGTGTTGACTATGCATTATTTAGTATGATAA</genome_strand>
        <mrna_strand>CTTGGAGTATTCCGCCGCCGGCAACTGACCAGAAGAAGA--AG--AAGGAGGAAAATGAACACAGATATCACAGCATCGGCAAAGCCCGAATATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGAATTTCTGTCACCGTCGGATACCTCTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTACCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCGAAATGTTATGAAAACAGTGGGCATTTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATATCTTTAATAATCAGTCTGTGGTTACCAACTTATTACGTTTGCTTGTTTTGCTATGAATCATGTATTATTGTGACTTGCTAATAATGATGAGTTGACAATGCATTATTTAGTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-A7BXB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1869" ref_strand="+" ref_description="SGN-M1869 T1255 [cos_markers]">
      <seq>taagttataatataatattgttcataaacaaaaaaacatgaatatgaatttgcctcttcttcttgtagttatttttctttgctttgcttctccttcactatcagtaagatgcaatccaaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgccctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaattccatcatgttactaatctcactggaacaattccacctgcaattgctaaactcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaatttcttagtcagctgaagaatttgacgttgctcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-A7BXB/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="58131" stop="57076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57862" g_stop="57376" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-M1869" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57862" e_stop="57376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTTATAATATAATATTGTTCATAAACAAAAAAAAAAAAGAAGAGAGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAG</genome_strand>
        <mrna_strand>TAAGTTATAATATAATATTGTTCATAAACAAAAA--------AACA-TGAATATGAATTTGCCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCAAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCCCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTCCATCATGTTACTAATCTCACTGGAACAATTCCACCTGCAATTGCTAAACTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTTCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-A7BXB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6843" ref_strand="+" ref_description="SGN-M6843 C2_At1g50575 [cosii_markers]">
      <seq>tttgttccctctattgaaaaaaatggggtttgctgcagatagtaccatttcaatggctaatatctttctaagaagctctcatcatcataagaaagatgtaaatttggggtcttgtatgagaaaggaaacatggggttttaatctttacttgccaaagctcaagtaccaatcaagaatctcattttgttgcaagaatgaatcaattgattttgaagaaagaacaagtcctaatgaggtcaagaaagagatagagcaatgctatgaattaatacacaggcttggtcgtggtgttgtgtatttaggatcttcaaggattggtcctggacatccacactacataaaaacctttgaattagggaacaagattgcaactctattagattgtacgacatggtccggggctgggccaggcttaatggatgctgccacacaaggtgctctacaagcagggaagcccgttggcgggttcaagataggtaaagaagcaggggaatggacagctacaaattttcatccatacttaccatcagagagttatcttacatgcaggtttttctccgcaaggaaacacgggctggtggatgctgttgtgagatgtagaagctctgaaaggacagctgttatcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-A7BXB/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="109870" stop="113970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110170" g_stop="110404" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110405" i_stop="112693" i_length="2289">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112694" g_stop="112822" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="364" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112823" i_stop="113181" i_length="359">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113182" g_stop="113366" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="549" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113367" i_stop="113591" i_length="225">
            <donor d_prob="0.667" d_score="1.00"/>
            <acceptor a_prob="0.485" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113592" g_stop="113670" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="628" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-M6843" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110170" e_stop="110404"/>
          <exon e_start="112694" e_stop="112822"/>
          <exon e_start="113182" e_stop="113366"/>
          <exon e_start="113592" e_stop="113670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTCCCTCTATTGAAAAAAATGGGGTTTGCTGCAGATAGTACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACAAGTCCTAATGAGGTAATAGATTTTATGACCCATTTCTTGTTTTGTTGGGTAATATTAGCAGATGCTTATGCTTTGTTTTAGTCCCAATTTGTGTAGTAAAAAGTGGGTTGAAGTTTCCAACTTTGAAAATTGTCAGATGTGAAAAAGAGAAAATTCCCATTTAGTTATCTATTTAGCTGCTGCATATGCTTTGTTTTTGTCTGTTGTCATGTGATCAGGAGTTCACCGGTTCGAAGAGTAAGCCTTGGACCCTGTGCATAGCGGGAGCTTAGTGCACTGGGCGGCTCTTCCTTATATGCTTCATTTTGTCTCAGTTTGTGTAAATATAAGTAAATATTGGGTTTAGTTTTTAGCTTTGGGACTTGTCAAAAGGCAGAGAAGGAAAAAAAATCTATTTAGTTGCTGCAAAGGCTTTATTTTGTAGCAATTTGTGTAAATTTAAGTAGAAATTGGGTAAAAGTTTCAAACTTTGTAACCTGTCAAAACGAAAAGAAGAAACAAAAGGTTCTAACTTTGGATGTTCAATGTGATTTTTGGATTGATGCAAACTTGGATTTTGTTTTGAAAATTTCAAATTTTGAGGACATTATGATCTCATTTTACACAAAAAGATGCTAACTTGGGATTTTGACGTGGGAAATTTATAATTTATATATTCAAATCTCGTTCGTATTGTTGTTTGAGAACCCATGAGTTGAAGAGACTATGTGCCTGTTGTCTTGCAGAAAAGAAAGAACAAGTGAATCCTAACTGAGGTTTTCAGTACTAAGAAAGATTTATGCTGCAATGTTAGATTAGTGATTAAAGAAGCTGCTAGCAGTACAAGATTGGAGATACTCTCTACCTTCACGCTATTCGCTCACTTTGTCAAAAGGAAAAATCATACGAATTTATCTCATTTTCGGACTTATAAGAAAGAGATTTTATCTGTATCTTTGTGTAAGTACTTTAACGTGCACAGGTTGAGTGTGGAGTGGGATGATGACTTAAAAATTTCGAGTCTTCTGAGTGGTGATAGGAGTAGAAGATATCTGGAGGCCTTTGTAGTGTGGTGGCCCCTTTACTCTTATGTTGTAAAAGGGAAGTGCATATTTGAGATATCTAGATGCTTTAAGAAACTGCTTCAGTGCCAGCAAGAAACAAGCACCACTCTTGCTAGATCAAACAAGCGATTATTGTTCCTTTATTCGTAATTCCTCCCATGGACCACATTAGGATCTTATGCACCTATACCATTACTTTATGCTTAGGTTAAAAGATTTAATGATATCATCGCTAGTATTTAAATCAGCCATCAATTACAGGTAGCTTGAAAGGAATGGCATATAGGCTGGCATCGGATACTGTTAGCTAAGTACCTAGGGGGAGAAGTACATGAATGGAAGTTGTTCAAACTAGCATATTGGAAGAACCATTAGCTAAAATGACCATAGGCCTCATTGGTGTCCAGATAGAGTCCTATTTTTCTCAATTTCGAAAGTGTTTATTAAATTTATCCATCTTTTCAAGAACATGCTTCCTCTGAAATGAAGAAGGAAAACTGGAAAGAATTCAATGTGAAACACCACGATCATTTGTTTGTGGATTGGAGAAAGTATCTTCATTCTGTTTTCCCAAGTTATATTACATTGTTGATGCAGCTCACTTTGGACTAAATAACTAACAAGTGATATATCGCGACAATCAATCAGTTGTTTACGTCTAGCAGCATTCTTCCATTAGTTTACTTGCCCTTACCCATTCTATCCTCCAGAAAAAGGAAAGATTGAATAATGGCTTTTCTTCGTCTTTTCAATAAGACGAGTTCTGATTCCTTTTTACTATTTGGAAGCATTGCAAACGGTCAAGATTGTTGTTGTTTGCATCCTTTATCTTGGTTACATGATTTTCGGTTCAAAGGAATCTAGTACTCCCACCACCTTTTCTTCTTTAACGTTTGCTGATGTAAGACTAATTGACGCCTAACAGCTGAATAGCTCAGCATGGACTCAGCTTGATTAGACGTGAAGAACCTATATGAGAAGCTATGCACCATGTCTATATTTGACTGGTTAGTGGTGGAAGCTTGAGAATCACATGCTTCCAGTCAAGTGCTTCTTTAGTTTTTAGATATAGCAATCAGTCACTAAATTATGTTTGGTTACTTTCAATGACATTTACTCTGTGTGAATTGTTAAATATCTGAGTTTTTAACACACAGTTTTCTTTTAGATGCATTGCTGCTTTACTTTTATTGCATCTCGGTTACACAAGATATCTGGTTTTGAGGTTTTTGAGACTAACAATCTGTTGAAAATGCAGGTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGTGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTAGGGAACAAGGTTAGTCAACTTTCTCAAAGTTTGGGTGAAGTAATAGAAAAAGAAAGATGAAGTAGCTTGTATAAAAAAGTACTCCCTCCGTTTCGATTTTCTCTGATTTTGACTTACGCGGAGTTCTAAGAAAGTGAAAAAGGACTTTCGAATCATGTGGTCTTAAACTAAAGATATGTAGAATGTACCATGTCCTTCAATGTTTTGGTGAATATGCCTCGTGAATTAATGAGTTACCAAAAAAGAAAAGACATTCTTTTTTAGACGGTCTAAAAGGAATGTAAGACAAACAAATTAAAACGGAGGACATAATACTATTCGGAGAAGAATCTGTGACTATTGTTTTCTAAATACTACTTGTTCGGCAGATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAGGCTTAATGGATGCTGCCACACAAGGTGCTCTACAAGCAGGGAAGCCCGTTGGCGGGTTCAAGATAGGTAAAGAAGCAGGGGAATGGACAGCTACAAATTTTCATCCATACTTACCATCAGAGAGTTATCTTACATGCAGGTAAACATAGCATCAAATGCATGGTTTTTCCTATGTTCTTAGGGGCCGTTTGGTTGTAAGCTGGTAACCAAGCACCATACTTGGTGTGCCGAATTTCATACATAACAATTAAAATGCTACCAAACATGTCATTCGTTTCTTACACGAATAATTCACTTCGTGACCAGCAGTCAAAGGGAGAGTCCCCTTATAGCTTCTTGAGTTCATCAACTGTTTTGCACTCAGGTTTTTCTCCGCAAGGAAACACGGGCTGGTGGATGCTGTTGTGAGATGTAGAAGCTCTGAAAGGACAGCTGTTATCGCG</genome_strand>
        <mrna_strand>TTTGTTCCCTCTATTGAAAAAAATGGGGTTTGCTGCAGATAGTACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACAAGTCCTAATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGTGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTAGGGAACAAG.......................................................................................................................................................................................................................................................................................................................................................................ATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAGGCTTAATGGATGCTGCCACACAAGGTGCTCTACAAGCAGGGAAGCCCGTTGGCGGGTTCAAGATAGGTAAAGAAGCAGGGGAATGGACAGCTACAAATTTTCATCCATACTTACCATCAGAGAGTTATCTTACATGCAG.................................................................................................................................................................................................................................GTTTTTCTCCGCAAGGAAACACGGGCTGGTGGATGCTGTTGTGAGATGTAGAAGCTCTGAAAGGACAGCTGTTATCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-A7BXB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M2286" ref_strand="+" ref_description="SGN-M2286 T1805 [cos_markers]">
      <seq>tttgttccctctattgaaaaaaatggggtttgctgcagatagtaccatttcaatggctaatatctttctaagaagctctcatcatcataagaaagatgtaaatttggggtcttgtatgagaaaggaaacatggggttttaatctttacttgccaaagctcaagtaccaatcaagaatctcattttgttgcaagaatgaatcaattgattttgaagaaagaacacgtcctaatgaggtcaagaaagagatagagcaatgctatgaattaatacacaggcttggtcgcggtgttgtgtatttaggatcttcaaggattggtcctggacatccacactacataaaaacctttgaattatggaacaagattgcaactctattagattgtacgacatggtccggggctgggccaggcttaatggatgctgccacacaaggtgctctacaagcagggaagcccgttgcgggttcaagataggtaaagaagcaggggaatggacagctaccaattttcatccatacttaccatcagagagttatcttacatgcaggtttttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-A7BXB/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="109870" stop="113668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110170" g_stop="110404" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110405" i_stop="112693" i_length="2289">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112694" g_stop="112822" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="364" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112823" i_stop="113181" i_length="359">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113182" g_stop="113366" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="548" r_length="184" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113367" i_stop="113591" i_length="225">
            <donor d_prob="0.667" d_score="0.98"/>
            <acceptor a_prob="0.485" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113592" g_stop="113600" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="557" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-M2286" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M2286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110170" e_stop="110404"/>
          <exon e_start="112694" e_stop="112822"/>
          <exon e_start="113182" e_stop="113366"/>
          <exon e_start="113592" e_stop="113600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTCCCTCTATTGAAAAAAATGGGGTTTGCTGCAGATAGTACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACAAGTCCTAATGAGGTAATAGATTTTATGACCCATTTCTTGTTTTGTTGGGTAATATTAGCAGATGCTTATGCTTTGTTTTAGTCCCAATTTGTGTAGTAAAAAGTGGGTTGAAGTTTCCAACTTTGAAAATTGTCAGATGTGAAAAAGAGAAAATTCCCATTTAGTTATCTATTTAGCTGCTGCATATGCTTTGTTTTTGTCTGTTGTCATGTGATCAGGAGTTCACCGGTTCGAAGAGTAAGCCTTGGACCCTGTGCATAGCGGGAGCTTAGTGCACTGGGCGGCTCTTCCTTATATGCTTCATTTTGTCTCAGTTTGTGTAAATATAAGTAAATATTGGGTTTAGTTTTTAGCTTTGGGACTTGTCAAAAGGCAGAGAAGGAAAAAAAATCTATTTAGTTGCTGCAAAGGCTTTATTTTGTAGCAATTTGTGTAAATTTAAGTAGAAATTGGGTAAAAGTTTCAAACTTTGTAACCTGTCAAAACGAAAAGAAGAAACAAAAGGTTCTAACTTTGGATGTTCAATGTGATTTTTGGATTGATGCAAACTTGGATTTTGTTTTGAAAATTTCAAATTTTGAGGACATTATGATCTCATTTTACACAAAAAGATGCTAACTTGGGATTTTGACGTGGGAAATTTATAATTTATATATTCAAATCTCGTTCGTATTGTTGTTTGAGAACCCATGAGTTGAAGAGACTATGTGCCTGTTGTCTTGCAGAAAAGAAAGAACAAGTGAATCCTAACTGAGGTTTTCAGTACTAAGAAAGATTTATGCTGCAATGTTAGATTAGTGATTAAAGAAGCTGCTAGCAGTACAAGATTGGAGATACTCTCTACCTTCACGCTATTCGCTCACTTTGTCAAAAGGAAAAATCATACGAATTTATCTCATTTTCGGACTTATAAGAAAGAGATTTTATCTGTATCTTTGTGTAAGTACTTTAACGTGCACAGGTTGAGTGTGGAGTGGGATGATGACTTAAAAATTTCGAGTCTTCTGAGTGGTGATAGGAGTAGAAGATATCTGGAGGCCTTTGTAGTGTGGTGGCCCCTTTACTCTTATGTTGTAAAAGGGAAGTGCATATTTGAGATATCTAGATGCTTTAAGAAACTGCTTCAGTGCCAGCAAGAAACAAGCACCACTCTTGCTAGATCAAACAAGCGATTATTGTTCCTTTATTCGTAATTCCTCCCATGGACCACATTAGGATCTTATGCACCTATACCATTACTTTATGCTTAGGTTAAAAGATTTAATGATATCATCGCTAGTATTTAAATCAGCCATCAATTACAGGTAGCTTGAAAGGAATGGCATATAGGCTGGCATCGGATACTGTTAGCTAAGTACCTAGGGGGAGAAGTACATGAATGGAAGTTGTTCAAACTAGCATATTGGAAGAACCATTAGCTAAAATGACCATAGGCCTCATTGGTGTCCAGATAGAGTCCTATTTTTCTCAATTTCGAAAGTGTTTATTAAATTTATCCATCTTTTCAAGAACATGCTTCCTCTGAAATGAAGAAGGAAAACTGGAAAGAATTCAATGTGAAACACCACGATCATTTGTTTGTGGATTGGAGAAAGTATCTTCATTCTGTTTTCCCAAGTTATATTACATTGTTGATGCAGCTCACTTTGGACTAAATAACTAACAAGTGATATATCGCGACAATCAATCAGTTGTTTACGTCTAGCAGCATTCTTCCATTAGTTTACTTGCCCTTACCCATTCTATCCTCCAGAAAAAGGAAAGATTGAATAATGGCTTTTCTTCGTCTTTTCAATAAGACGAGTTCTGATTCCTTTTTACTATTTGGAAGCATTGCAAACGGTCAAGATTGTTGTTGTTTGCATCCTTTATCTTGGTTACATGATTTTCGGTTCAAAGGAATCTAGTACTCCCACCACCTTTTCTTCTTTAACGTTTGCTGATGTAAGACTAATTGACGCCTAACAGCTGAATAGCTCAGCATGGACTCAGCTTGATTAGACGTGAAGAACCTATATGAGAAGCTATGCACCATGTCTATATTTGACTGGTTAGTGGTGGAAGCTTGAGAATCACATGCTTCCAGTCAAGTGCTTCTTTAGTTTTTAGATATAGCAATCAGTCACTAAATTATGTTTGGTTACTTTCAATGACATTTACTCTGTGTGAATTGTTAAATATCTGAGTTTTTAACACACAGTTTTCTTTTAGATGCATTGCTGCTTTACTTTTATTGCATCTCGGTTACACAAGATATCTGGTTTTGAGGTTTTTGAGACTAACAATCTGTTGAAAATGCAGGTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGTGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTAGGGAACAAGGTTAGTCAACTTTCTCAAAGTTTGGGTGAAGTAATAGAAAAAGAAAGATGAAGTAGCTTGTATAAAAAAGTACTCCCTCCGTTTCGATTTTCTCTGATTTTGACTTACGCGGAGTTCTAAGAAAGTGAAAAAGGACTTTCGAATCATGTGGTCTTAAACTAAAGATATGTAGAATGTACCATGTCCTTCAATGTTTTGGTGAATATGCCTCGTGAATTAATGAGTTACCAAAAAAGAAAAGACATTCTTTTTTAGACGGTCTAAAAGGAATGTAAGACAAACAAATTAAAACGGAGGACATAATACTATTCGGAGAAGAATCTGTGACTATTGTTTTCTAAATACTACTTGTTCGGCAGATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAGGCTTAATGGATGCTGCCACACAAGGTGCTCTACAAGCAGGGAAGCCCGTTGGCGGGTTCAAGATAGGTAAAGAAGCAGGGGAATGGACAGCTACAAATTTTCATCCATACTTACCATCAGAGAGTTATCTTACATGCAGGTAAACATAGCATCAAATGCATGGTTTTTCCTATGTTCTTAGGGGCCGTTTGGTTGTAAGCTGGTAACCAAGCACCATACTTGGTGTGCCGAATTTCATACATAACAATTAAAATGCTACCAAACATGTCATTCGTTTCTTACACGAATAATTCACTTCGTGACCAGCAGTCAAAGGGAGAGTCCCCTTATAGCTTCTTGAGTTCATCAACTGTTTTGCACTCAGGTTTTTCTC</genome_strand>
        <mrna_strand>TTTGTTCCCTCTATTGAAAAAAATGGGGTTTGCTGCAGATAGTACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACACGTCCTAATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGCGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTATGGAACAAG.......................................................................................................................................................................................................................................................................................................................................................................ATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAGGCTTAATGGATGCTGCCACACAAGGTGCTCTACAAGCAGGGAAGCCCGTT-GCGGGTTCAAGATAGGTAAAGAAGCAGGGGAATGGACAGCTACCAATTTTCATCCATACTTACCATCAGAGAGTTATCTTACATGCAG.................................................................................................................................................................................................................................GTTTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="30166" PGL_stop="29055"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30166" e_stop="29959"/>
            <exon e_start="29466" e_stop="29083"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.928"/>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="30166" e_stop="29959" e_length="208"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29958" i_stop="29467" i_length="492"/>
          </intron>
          <exon e_serial="2" e_score="0.940">
            <gDNA_exon_boundary e_start="29466" e_stop="29083" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30166" stop="29959"/>
              <exon start="29466" stop="29083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8273-3" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG : GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAATATGATTTCTTGTGTTGCGATGAATCATGTATTATTGTTACTTGCTAATAATGATGTGTTGACTATGCATTATTTAGTATGATAA</gDNA_template>
            <first_frame> T  G  V  S  A  A  G  K  *  P  E  E  E  Q  L  R  R  K  M  N  T  D  I  T  A  S  A  K  P  E  Y  P  V  V  D  R  N  P  P  F  T  K  T  V  G  N  F  N  T  L  D  Y  L  R  L  T  T  I  T  G  I  S  V  T  V  G  Y  L  S   : G  I  K  P  G  I  R  G  P  S  M  V  T  G  G  L  I  G  L  M  G  G  F  M  Y  A  Y  Q  N  S  A  G  R  L  M  G  F  F  P  N  E  G  E  V  A  K  A  K  Y  K  I  *  L  L  P  L  I  F  W  F  F  W  I  P  F  C  S  F  P  K  M  L  L  K  Q  W  A  F  S  L  L  M  R  T  L  L  K  V  I  P  L  I  I  S  L  W  L  P  T  *  Y  D  F  L  C  C  D  E  S  C  I  I  V  T  C  *  *  *  C  V  D  Y  A  L  F  S  M  I  </first_frame>
            <second_frame>  L  E  Y  P  P  P  A  S  D  Q  K  K  S  S  *  E  G  R  *  I  L  I  S  Q  H  R  Q  S  P  S  I  Q  L  *  I  E  T  H  R  L  L  K  P  S  V  I  S  T  H  S  I  T  S  G  S  P  P  S  P  G  F  L  S  P  S  D  T  S  P  :  E  *  S  Q  G  L  E  G  H  R  W  L  P  E  V  *  L  G  *  W  V  V  S  C  M  L  I  R  I  Q  L  A  G  S  W  V  S  S  Q  M  K  E  R  *  P  K  P  S  T  R  F  N  C  F  P  *  F  S  G  S  F  G  F  P  F  V  V  S  P  R  C  Y  *  N  S  G  H  S  L  F  S  *  E  L  C  *  K  *  Y  H  *  *  S  V  S  G  Y  Q  L  N  M  I  S  C  V  A  M  N  H  V  L  L  L  L  A  N  N  D  V  L  T  M  H  Y  L  V  *  * </second_frame>
            <third_frame>   W  S  I  R  R  R  Q  V  T  R  R  R  A  A  K  K  E  D  E  Y  *  Y  H  S  I  G  K  A  R  V  S  S  C  R  S  K  P  T  V  Y  *  N  R  R  *  F  Q  H  T  R  L  P  P  A  H  H  H  H  R  D  F  C  H  R  R  I  P  L  R :   N  K  A  R  D  *  R  A  I  D  G  Y  R  R  F  D  W  A  N  G  W  F  H  V  C  L  S  E  F  S  W  Q  A  H  G  F  L  P  K  *  R  R  G  S  Q  S  Q  V  Q  D  L  T  A  S  L  N  F  L  V  L  L  D  S  L  L  *  F  P  Q  D  V  I  K  T  V  G  I  L  S  S  H  E  N  F  V  E  S  N  T  I  N  N  Q  S  L  V  T  N  L  I  *  F  L  V  L  R  *  I  M  Y  Y  C  Y  L  L  I  M  M  C  *  L  C  I  I  *  Y  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30139" stop="29959"/>
                    <exon start="29466" stop="29312"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PEEEQLRRKMNTDITASAKPEYPVVDRNPPFTKTVGNFNTLDYLRLTTITGISVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVAKAKYKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30163" e_stop="29959"/>
            <exon e_start="29466" e_stop="29167"/>
            <exon e_start="29068" e_stop="29055"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.960" e_score="1.000"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30163" e_stop="29959" e_length="205"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29958" i_stop="29467" i_length="492"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29466" e_stop="29167" e_length="300"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.960">
            <gDNA_intron_boundary i_start="29166" i_stop="29069" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="0.571">
            <gDNA_exon_boundary e_start="29068" e_stop="29055" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30163" stop="29959"/>
              <exon start="29466" stop="29167"/>
              <exon start="29068" stop="29055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8273-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG : GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAAT : CTTAAATGAGAGAA</gDNA_template>
            <first_frame> G  V  S  A  A  G  K  *  P  E  E  E  Q  L  R  R  K  M  N  T  D  I  T  A  S  A  K  P  E  Y  P  V  V  D  R  N  P  P  F  T  K  T  V  G  N  F  N  T  L  D  Y  L  R  L  T  T  I  T  G  I  S  V  T  V  G  Y  L  S   : G  I  K  P  G  I  R  G  P  S  M  V  T  G  G  L  I  G  L  M  G  G  F  M  Y  A  Y  Q  N  S  A  G  R  L  M  G  F  F  P  N  E  G  E  V  A  K  A  K  Y  K  I  *  L  L  P  L  I  F  W  F  F  W  I  P  F  C  S  F  P  K  M  L  L  K  Q  W  A  F  S  L  L  M  R  T  L  L  K  V  I  P  L  I  I  S  L  W  L  P  T  *   : S  *  M  R  E </first_frame>
            <second_frame>  E  Y  P  P  P  A  S  D  Q  K  K  S  S  *  E  G  R  *  I  L  I  S  Q  H  R  Q  S  P  S  I  Q  L  *  I  E  T  H  R  L  L  K  P  S  V  I  S  T  H  S  I  T  S  G  S  P  P  S  P  G  F  L  S  P  S  D  T  S  P  :  E  *  S  Q  G  L  E  G  H  R  W  L  P  E  V  *  L  G  *  W  V  V  S  C  M  L  I  R  I  Q  L  A  G  S  W  V  S  S  Q  M  K  E  R  *  P  K  P  S  T  R  F  N  C  F  P  *  F  S  G  S  F  G  F  P  F  V  V  S  P  R  C  Y  *  N  S  G  H  S  L  F  S  *  E  L  C  *  K  *  Y  H  *  *  S  V  S  G  Y  Q  L  N  :  L  K  *  E   </second_frame>
            <third_frame>   S  I  R  R  R  Q  V  T  R  R  R  A  A  K  K  E  D  E  Y  *  Y  H  S  I  G  K  A  R  V  S  S  C  R  S  K  P  T  V  Y  *  N  R  R  *  F  Q  H  T  R  L  P  P  A  H  H  H  H  R  D  F  C  H  R  R  I  P  L  R :   N  K  A  R  D  *  R  A  I  D  G  Y  R  R  F  D  W  A  N  G  W  F  H  V  C  L  S  E  F  S  W  Q  A  H  G  F  L  P  K  *  R  R  G  S  Q  S  Q  V  Q  D  L  T  A  S  L  N  F  L  V  L  L  D  S  L  L  *  F  P  Q  D  V  I  K  T  V  G  I  L  S  S  H  E  N  F  V  E  S  N  T  I  N  N  Q  S  L  V  T  N  L  I :   L  N  E  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30139" stop="29959"/>
                    <exon start="29466" stop="29312"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PEEEQLRRKMNTDITASAKPEYPVVDRNPPFTKTVGNFNTLDYLRLTTITGISVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVAKAKYKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="57862" PGL_stop="57376"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57862" e_stop="57376"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="57862" e_stop="57376" e_length="487"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57862" stop="57376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1869" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGTTATAATATAATATTGTTCATAAACAAAAAAAAAAAAGAAGAGAGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAG</gDNA_template>
            <first_frame> *  V  I  I  *  Y  C  S  *  T  K  K  K  K  K  R  E  Y  E  L  V  S  S  S  C  S  Y  F  S  L  L  C  F  S  F  T  I  S  K  M  Q  S  E  R  Q  K  S  P  S  T  N  K  E  R  L  R  Q  S  L  P  F  S  F  M  G  S  K  H  R  L  L  L  L  V  R  R  K  M  *  P  E  N  Q  P  D  K  C  S  H  R  L  P  S  Q  Y  L  R  P  N  S  G  S  R  R  R  P  S  I  S  R  N  I  G  I  S  S  C  Y  *  S  H  R  N  N  S  T  C  N  C  E  A  H  K  S  Q  N  V  K  A  Q  L  H  *  P  Y  R  S  D  P  *  I  P  *  S  A  E  E  F  D  V  A  R  </first_frame>
            <second_frame>  K  L  *  Y  N  I  V  H  K  Q  K  K  K  R  R  E  N  M  N  L  S  L  L  L  V  V  I  F  L  C  F  A  S  P  S  L  S  V  R  C  N  P  K  D  K  K  V  L  L  Q  I  K  K  D  L  G  N  P  Y  H  L  A  S  W  D  P  N  T  D  C  C  Y  W  Y  V  V  K  C  D  R  K  T  N  R  I  N  A  L  T  V  F  Q  A  N  I  S  G  Q  I  P  A  A  V  G  D  L  P  Y  L  E  T  L  E  F  H  H  V  T  N  L  T  G  T  I  P  P  A  I  A  K  L  T  N  L  K  M  L  R  L  S  F  T  N  L  T  G  P  I  P  E  F  L  S  Q  L  K  N  L  T  L  L  E </second_frame>
            <third_frame>   S  Y  N  I  I  L  F  I  N  K  K  K  K  E  E  R  I  *  T  C  L  F  F  L  *  L  F  F  F  A  L  L  L  L  H  Y  Q  *  D  A  I  R  K  T  K  K  S  F  Y  K  *  R  K  T  *  A  I  L  T  I  *  L  H  G  I  Q  T  Q  I  A  V  T  G  T  S  *  N  V  T  G  K  P  T  G  *  M  L  S  P  S  S  K  P  I  S  P  A  K  F  R  Q  P  S  E  T  F  H  I  S  K  H  W  N  F  I  M  L  L  I  S  P  E  Q  F  H  L  Q  L  R  S  S  Q  I  S  K  C  *  G  S  A  S  L  T  L  Q  V  R  S  L  N  S  L  V  S  *  R  I  *  R  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57852" stop="57376"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YNIVHKQKKKRRENMNLSLLLVVIFLCFASPSLSVRCNPKDKKVLLQIKKDLGNPYHLASWDPNTDCCYWYVVKCDRKTNRINALTVFQANISGQIPAAVGDLPYLETLEFHHVTNLTGTIPPAIAKLTNLKMLRLSFTNLTGPIPEFLSQLKNLTLLE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="110170" PGL_stop="113670"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110170" e_stop="110404"/>
            <exon e_start="112694" e_stop="112822"/>
            <exon e_start="113182" e_stop="113366"/>
            <exon e_start="113592" e_stop="113670"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.810" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.667" acc_prob="0.485" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="110170" e_stop="110404" e_length="235"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.810">
            <gDNA_intron_boundary i_start="110405" i_stop="112693" i_length="2289"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112694" e_stop="112822" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.925">
            <gDNA_intron_boundary i_start="112823" i_stop="113181" i_length="359"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="113182" e_stop="113366" e_length="185"/>
          </exon>
          <intron i_serial="3" don_prob="0.667" acc_prob="0.485">
            <gDNA_intron_boundary i_start="113367" i_stop="113591" i_length="225"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="113592" e_stop="113670" e_length="79"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110170" stop="110404"/>
              <exon start="112694" stop="112822"/>
              <exon start="113182" stop="113366"/>
              <exon start="113592" stop="113670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110170" stop="110404"/>
              <exon start="112694" stop="112822"/>
              <exon start="113182" stop="113366"/>
              <exon start="113592" stop="113600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M2286" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGTTCCCTCTATTGAAAAAAATGGGGTTTGCTGCAGATAGTACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACAAGTCCTAATGAG : GTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGTGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTAGGGAACAAG : ATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAGGCTTAATGGATGCTGCCACACAAGGTGCTCTACAAGCAGGGAAGCCCGTTGGCGGGTTCAAGATAGGTAAAGAAGCAGGGGAATGGACAGCTACAAATTTTCATCCATACTTACCATCAGAGAGTTATCTTACATGCAG : GTTTTTCTCCGCAAGGAAACACGGGCTGGTGGATGCTGTTGTGAGATGTAGAAGCTCTGAAAGGACAGCTGTTATCGCG</gDNA_template>
            <first_frame> F  V  P  S  I  E  K  N  G  V  C  C  R  *  Y  H  F  N  G  *  Y  L  S  K  K  L  S  S  S  *  E  R  C  K  F  G  V  L  Y  E  K  G  N  M  G  F  *  S  L  L  A  K  A  Q  V  P  I  K  N  L  I  L  L  Q  E  *  I  N  *  F  *  R  K  N  K  S  *  *   : G  Q  E  R  D  R  A  M  L  *  I  N  T  Q  A  W  S  W  C  C  V  F  R  I  F  K  D  W  S  W  T  S  T  L  H  K  N  L  *  I  R  E  Q   : D  C  N  S  I  R  L  Y  D  M  V  R  G  W  A  R  L  N  G  C  C  H  T  R  C  S  T  S  R  E  A  R  W  R  V  Q  D  R  *  R  S  R  G  M  D  S  Y  K  F  S  S  I  L  T  I  R  E  L  S  Y  M  Q  :  V  F  L  R  K  E  T  R  A  G  G  C  C  C  E  M  *  K  L  *  K  D  S  C  Y  R  </first_frame>
            <second_frame>  L  F  P  L  L  K  K  M  G  F  A  A  D  S  T  I  S  M  A  N  I  F  L  R  S  S  H  H  H  K  K  D  V  N  L  G  S  C  M  R  K  E  T  W  G  F  N  L  Y  L  P  K  L  K  Y  Q  S  R  I  S  F  C  C  K  N  E  S  I  D  F  E  E  R  T  S  P  N  E  :  V  K  K  E  I  E  Q  C  Y  E  L  I  H  R  L  G  R  G  V  V  Y  L  G  S  S  R  I  G  P  G  H  P  H  Y  I  K  T  F  E  L  G  N  K  :  I  A  T  L  L  D  C  T  T  W  S  G  A  G  P  G  L  M  D  A  A  T  Q  G  A  L  Q  A  G  K  P  V  G  G  F  K  I  G  K  E  A  G  E  W  T  A  T  N  F  H  P  Y  L  P  S  E  S  Y  L  T  C  R :   F  F  S  A  R  K  H  G  L  V  D  A  V  V  R  C  R  S  S  E  R  T  A  V  I  A </second_frame>
            <third_frame>   C  S  L  Y  *  K  K  W  G  L  L  Q  I  V  P  F  Q  W  L  I  S  F  *  E  A  L  I  I  I  R  K  M  *  I  W  G  L  V  *  E  R  K  H  G  V  L  I  F  T  C  Q  S  S  S  T  N  Q  E  S  H  F  V  A  R  M  N  Q  L  I  L  K  K  E  Q  V  L  M  R :   S  R  K  R  *  S  N  A  M  N  *  Y  T  G  L  V  V  V  L  C  I  *  D  L  Q  G  L  V  L  D  I  H  T  T  *  K  P  L  N  *  G  T  R :   L  Q  L  Y  *  I  V  R  H  G  P  G  L  G  Q  A  *  W  M  L  P  H  K  V  L  Y  K  Q  G  S  P  L  A  G  S  R  *  V  K  K  Q  G  N  G  Q  L  Q  I  F  I  H  T  Y  H  Q  R  V  I  L  H  A   : G  F  S  P  Q  G  N  T  G  W  W  M  L  L  *  D  V  E  A  L  K  G  Q  L  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110171" stop="110404"/>
                    <exon start="112694" stop="112822"/>
                    <exon start="113182" stop="113366"/>
                    <exon start="113592" stop="113670"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFPLLKKMGFAADSTISMANIFLRSSHHHKKDVNLGSCMRKETWGFNLYLPKLKYQSRISFCCKNESIDFEERTSPNEVKKEIEQCYELIHRLGRGVVYLGSSRIGPGHPHYIKTFELGNKIATLLDCTTWSGAGPGLMDAATQGALQAGKPVGGFKIGKEAGEWTATNFHPYLPSESYLTCRFFSARKHGLVDAVVRCRSSERTAVIA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 18 chains have been computed
$ 
$ memory statistics:
$ 10648 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 2129 bytes was the average size of a spliced alignment
$ 8160 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2720 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 19 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-07 06:02:12
-->
