<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2007-12-13 18:18:03"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-j4q84/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-Z1nM0U/sgn_marker_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Z1nM0U/sgn_marker_seqs" ref_id="TG662-R" ref_strand="+" ref_description="TG662-R">
      <seq>caagcttatcctttattactattagaaatagaacttacactataaccaaacaaacatttcaaatcttgaaacaacacaagataaaggcagaatgaagtgcctttcttcaatactactatgatatgcatatgtttatttattcaagtccaagcttttccctaagaatttttacaaactcaatgatcttatgttggtcaggcaaagttttagccacactgtccctttgcatgcacctcttggcccaagccacaaggtttgggcactcagcctcaatgctgaagttaccataaacctcataagcatgaaaccagcagtagaacccaatgagagcaatatccccaaaaccaaagttatctcctccataataaggcttctctccaagtgctccctccaacactttaaggatttctacgaaatctttcttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-j4q84/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="13297" stop="14323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13597" g_stop="14023" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="TG662-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="TG662-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13597" e_stop="14023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCTTATCCTTTATTACTATTAGAAATAGAACTTACACTATAACCAAACAAACATTTCAAATCTTGAAACAACACAAGATAAAGGCAGAATGAAGTGCCTTTCTTCAATACTACTATGATATGCATATGTTTATTTATTCAAGTCCAAGCTTTTCCCTAAGAATTTTTACAAACTCAATGATCTTATGTTGGTCAGGCAAAGTTTTAGCCACACTGTCCCTTTGCATGCACCTCTTGGCCCAAGCCACAAGGTTTGGGCACTCAGCCTCAATGCTGAAGTTACCATAAACCTCATAAGCATGAAACCAGCAGTAGAACCCAATGAGAGCAATATCCCCAAAACCAAAGTTATCTCCTCCATAATAAGGCTTCTCTCCAAGTGCTCCCTCCAACACTTTAAGGATTTCTACGAAATCTTTCTTACC</genome_strand>
        <mrna_strand>CAAGCTTATCCTTTATTACTATTAGAAATAGAACTTACACTATAACCAAACAAACATTTCAAATCTTGAAACAACACAAGATAAAGGCAGAATGAAGTGCCTTTCTTCAATACTACTATGATATGCATATGTTTATTTATTCAAGTCCAAGCTTTTCCCTAAGAATTTTTACAAACTCAATGATCTTATGTTGGTCAGGCAAAGTTTTAGCCACACTGTCCCTTTGCATGCACCTCTTGGCCCAAGCCACAAGGTTTGGGCACTCAGCCTCAATGCTGAAGTTACCATAAACCTCATAAGCATGAAACCAGCAGTAGAACCCAATGAGAGCAATATCCCCAAAACCAAAGTTATCTCCTCCATAATAAGGCTTCTCTCCAAGTGCTCCCTCCAACACTTTAAGGATTTCTACGAAATCTTTCTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Z1nM0U/sgn_marker_seqs" ref_id="TG662-F" ref_strand="+" ref_description="TG662-F">
      <seq>ggcgaattgggccctctagatgcatgctcgagcggccgccagtgtgatggatatctgcagaattcggctttcgtgggtttggaattgtttacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtagaaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttttggggatattgctctcattgggttctactgctggtttcatgcttatgaggtttatggtaacttcagcattgaggctgagtgcccaaaccttgtggcttgggccaagaggtgcatgcaaagggacagtgtggctaaaactttgcctgaccaacataagatcattgagtttgtaaaaattcttagggaaaagcttggacttgaataaataaacatatgcatatcatagtagtattgaagaaaggcacttcattctgcctttatcttgtgttgtttcaagatttgaaatgtttgtttggttatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-j4q84/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="41023" stop="13336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17247" g_stop="17163" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17162" i_stop="14890" i_length="2273">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14889" g_stop="14871" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="104" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14077" g_stop="13636" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="546" r_length="442" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="TG662-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="TG662-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17247" e_stop="17163"/>
          <exon e_start="14889" e_stop="14871"/>
          <exon e_start="14077" e_stop="13636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAACTTATATATATTGATAATATAAAGAAATTATCATATTCTGTAGTCAAGAAATGCAATCTCTTATATTTATTTTATGATCATAAGCTAAAAAAAAAAAAAGCAAAGAACAAGAGAATCTCTGATTTATTAATGTCCTGTACAAAATAAAAATAAAAAGATGTGAAACTTTCTTTACATAATTAGACCAGAGATTATTAATTAAATAAAGGAAAGTTTTACATTTGACTGTTCGATAAAAAATATTTAGTTGTTACACAAGTATAACATGTTATGTATCACCTTAATTATGTGGCATAAAATTACATAGATTGCTCTTGAAAATGAGTTGATTTTTAATTTATGTCCCTTAACGACTGAACTTATGTCTAATAAAACAAAAATTCTTTACAAATTGTTATATGTAAGACAACTCGAGGATATTAAATATACAAATATGTACTTATGTTCCATGGATTTTTATTTTTCTTAAATTACGAAGACATAAGTTAAAAGACCAACACAAATAGTCATAAGTGAACTTTTGGGCCAACATGTTTGGAGTAGAGAGGAAGAGGGACTTGATGACTAATAAAAGCCCACTTCATTTAGAGAAGAGGATAGTCTCCAGCCCATAATAAAGATTTTTATTTTGAAAGAGAATTGAATAAATGAATAGAGAGTTATCGGTTTGTAGAGATGTTAAATCGTTATAGAACGATTAAGATACTGATTTATTGGTTTTTGCTTGTTATTGGTTTTTTTATCGATTTAACTTTAACCGTTAAGATTTGACATAACAAAAAAAATTTTGAAAATCACTTAGAAACAAGGTGACAAACCAAATAAACCATGCATATGAGTTCACAAGTTACATCTTGCTCAAAAGTAAACACTTTTAGATTATAGAATAACCAAGTGTTTGAGACAAACAAAAATAAAAGTAGAATATCAAAACTCTAAGTCAAGGACTTTATACACAAAATAATATAAATATAATTATTTAATTTACTACGGATTATCGGTTAACCCGTTAAAAAAAATCACAAACCATTAAAAATCGATAGCCCGAAACAAAAAAAAATTAAAATCGTTATCAGAACTACTAAATTAATAACCAATATGAACGAATTAATAACTTTTTTTCAATTTAAATTATCAATTTTGATTTGATTTCGAATGACTCTAGTCCAAAATACTTATCAATCATCTTTAATCTTTCCTCTCTCTTTTCTTCAAATTTAATTTATATTTGACTACAAACTTTGATATTGTGAAATATCATATAATTATAATATAAAATATAAATAAATAAAAAGTCTAGCTTGACAGTATTATTTTGGAATATATTTCAAACCTCCAACCATTTTTCTAAAATTTTTGCGAAAGGGACTTTGATAAACTTTTTTTTTTTTAATTAATATATAAAAGAAGATACACATATTGCTCCAGACAATGTCCACCACATACTACACTGTGCCTTAGTACATCCCAAAGATATTTGATTTAAACGTGTGATCTTAAAGCAATTTGTGAATTCTTGTATTATTATACATATTATCTAAACTTTTTTTTTTCAAATTAGTTGTCAATTTAAACAAGTAAGAGAAAAAAATTAAAACTTTAGCCTTAGTATTAATTATTCTAAAATTAAGAGACACAAGATAAAGATTAAACAAAAGTTATATAAATTGACCTCTTTGTGACGAAAGCAATGACCTATAGGCTATAGACCAATTTATTGACGAGTCAGAAGAATATCTTCGTTGAAAAATTATATTGTATATCTAAAATAAATTTTTTTTTTTTTTTATATATGTTACATATTTTTTAATTGCTAACCTATTTTTATTTTTTTATATTTTGATGTTAAAGTTCTGGCTTGGCCAACTTAAGGCATCTACACCCCTATATATACTTCGTGTATGTATATACAACAAGCAAATCAATACTTTGGCAATTTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAG</genome_strand>
        <mrna_strand>GGCGAATTGGGCCCTCTAGATGCATGCTCGAGCGGCCGCCAGTGTGATGGATATCTGCAGAATTCGGCTTTCGTGGGTTTGGAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Z1nM0U/sgn_marker_seqs" ref_id="SSR230" ref_strand="+" ref_description="SSR230">
      <seq>gattgcacttgctgagaaagagataaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtagaaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttttggggatattgctctcattgggttctactgctggtttcatgcttatgaggtttatggtaacttcagcattgaggctgagtgcccaaaccttgtggcttgggccaagaggtgcatgcaaagggacagtgtggctaaaactttgcctgaccaacataagatcattgagtttgtaaaaattcttanggaaaagcttggacttgaataaataaacatatgcatatcatagtagtattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-j4q84/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15426" stop="13403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15126" g_stop="14871" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13703" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="630" r_length="375" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SSR230" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SSR230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15126" e_stop="14871"/>
          <exon e_start="14077" e_stop="13703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGA</genome_strand>
        <mrna_strand>GATTGCACTTGCTGAGAAAGAGA-TAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTANGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="13597" PGL_stop="14023"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13597" e_stop="14023"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13597" e_stop="14023" e_length="427"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13597" stop="14023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG662-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGCTTATCCTTTATTACTATTAGAAATAGAACTTACACTATAACCAAACAAACATTTCAAATCTTGAAACAACACAAGATAAAGGCAGAATGAAGTGCCTTTCTTCAATACTACTATGATATGCATATGTTTATTTATTCAAGTCCAAGCTTTTCCCTAAGAATTTTTACAAACTCAATGATCTTATGTTGGTCAGGCAAAGTTTTAGCCACACTGTCCCTTTGCATGCACCTCTTGGCCCAAGCCACAAGGTTTGGGCACTCAGCCTCAATGCTGAAGTTACCATAAACCTCATAAGCATGAAACCAGCAGTAGAACCCAATGAGAGCAATATCCCCAAAACCAAAGTTATCTCCTCCATAATAAGGCTTCTCTCCAAGTGCTCCCTCCAACACTTTAAGGATTTCTACGAAATCTTTCTTACC</gDNA_template>
            <first_frame> Q  A  Y  P  L  L  L  L  E  I  E  L  T  L  *  P  N  K  H  F  K  S  *  N  N  T  R  *  R  Q  N  E  V  P  F  F  N  T  T  M  I  C  I  C  L  F  I  Q  V  Q  A  F  P  *  E  F  L  Q  T  Q  *  S  Y  V  G  Q  A  K  F  *  P  H  C  P  F  A  C  T  S  W  P  K  P  Q  G  L  G  T  Q  P  Q  C  *  S  Y  H  K  P  H  K  H  E  T  S  S  R  T  Q  *  E  Q  Y  P  Q  N  Q  S  Y  L  L  H  N  K  A  S  L  Q  V  L  P  P  T  L  *  G  F  L  R  N  L  S  Y  </first_frame>
            <second_frame>  K  L  I  L  Y  Y  Y  *  K  *  N  L  H  Y  N  Q  T  N  I  S  N  L  E  T  T  Q  D  K  G  R  M  K  C  L  S  S  I  L  L  *  Y  A  Y  V  Y  L  F  K  S  K  L  F  P  K  N  F  Y  K  L  N  D  L  M  L  V  R  Q  S  F  S  H  T  V  P  L  H  A  P  L  G  P  S  H  K  V  W  A  L  S  L  N  A  E  V  T  I  N  L  I  S  M  K  P  A  V  E  P  N  E  S  N  I  P  K  T  K  V  I  S  S  I  I  R  L  L  S  K  C  S  L  Q  H  F  K  D  F  Y  E  I  F  L  T </second_frame>
            <third_frame>   S  L  S  F  I  T  I  R  N  R  T  Y  T  I  T  K  Q  T  F  Q  I  L  K  Q  H  K  I  K  A  E  *  S  A  F  L  Q  Y  Y  Y  D  M  H  M  F  I  Y  S  S  P  S  F  S  L  R  I  F  T  N  S  M  I  L  C  W  S  G  K  V  L  A  T  L  S  L  C  M  H  L  L  A  Q  A  T  R  F  G  H  S  A  S  M  L  K  L  P  *  T  S  *  A  *  N  Q  Q  *  N  P  M  R  A  I  S  P  K  P  K  L  S  P  P  *  *  G  F  S  P  S  A  P  S  N  T  L  R  I  S  T  K  S  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13718" stop="14023"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YAYVYLFKSKLFPKNFYKLNDLMLVRQSFSHTVPLHAPLGPSHKVWALSLNAEVTINLISMKPAVEPNESNIPKTKVISSIIRLLSKCSLQHFKDFYEIFLT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="17247" PGL_stop="13636"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17247" e_stop="17163"/>
            <exon e_start="14889" e_stop="14871"/>
            <exon e_start="14077" e_stop="13636"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.947"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17247" e_stop="17163" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="17162" i_stop="14890" i_length="2273"/>
          </intron>
          <exon e_serial="2" e_score="0.947">
            <gDNA_exon_boundary e_start="14889" e_stop="14871" e_length="19"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14077" e_stop="13636" e_length="442"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17247" stop="17163"/>
              <exon start="14889" stop="14871"/>
              <exon start="14077" stop="13636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG662-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAT : TGATTACATTGACAAGAAG : TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAG</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  *   : L  I  T  L  T  R  S :   Y  M  L  Q  E  A  R  F  I  Q  Q  R  E  T  N  K  R  Q  V  R  K  I  S  *  K  S  L  K  C  W  R  E  H  L  E  R  S  L  I  M  E  E  I  T  L  V  L  G  I  L  L  S  L  G  S  T  A  G  F  M  L  M  R  F  M  V  T  S  A  L  R  L  S  A  Q  T  L  W  L  G  P  R  G  A  C  K  G  T  V  W  L  K  L  C  L  T  N  I  R  S  L  S  L  *  K  F  L  G  K  S  L  D  L  N  K  *  T  Y  A  Y  H  S  S  I  E  E  R  H  F  I  L  P  L  S  C  V  V  S  R  F  E  M  F  V  W  L  * </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  N  :  *  L  H  *  Q  E   : V  I  C  Y  R  K  Q  D  L  Y  S  N  G  R  R  T  R  G  R  *  E  R  F  R  R  N  P  *  S  V  G  G  S  T  W  R  E  A  L  L  W  R  R  *  L  W  F  W  G  Y  C  S  H  W  V  L  L  L  V  S  C  L  *  G  L  W  *  L  Q  H  *  G  *  V  P  K  P  C  G  L  G  Q  E  V  H  A  K  G  Q  C  G  *  N  F  A  *  P  T  *  D  H  *  V  C  K  N  S  *  G  K  A  W  T  *  I  N  K  H  M  H  I  I  V  V  L  K  K  G  T  S  F  C  L  Y  L  V  L  F  Q  D  L  K  C  L  F  G  Y   </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  I :   D  Y  I  D  K  K  :  L  Y  A  T  G  S  K  I  Y  T  A  T  G  D  E  Q  E  A  G  K  K  D  F  V  E  I  L  K  V  L  E  G  A  L  G  E  K  P  Y  Y  G  G  D  N  F  G  F  G  D  I  A  L  I  G  F  Y  C  W  F  H  A  Y  E  V  Y  G  N  F  S  I  E  A  E  C  P  N  L  V  A  W  A  K  R  C  M  Q  R  D  S  V  A  K  T  L  P  D  Q  H  K  I  I  E  F  V  K  I  L  R  E  K  L  G  L  E  *  I  N  I  C  I  S  *  *  Y  *  R  K  A  L  H  S  A  F  I  L  C  C  F  K  I  *  N  V  C  L  V  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17245" stop="17163"/>
                    <exon start="14889" stop="14871"/>
                    <exon start="14077" stop="13733"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFFFFFFFFFFFFFFFFFFFFFFFFLIDYIDKKLYATGSKIYTATGDEQEAGKKDFVEILKVLEGALGEKPYYGGDNFGFGDIALIGFYCWFHAYEVYGNFSIEAECPNLVAWAKRCMQRDSVAKTLPDQHKIIEFVKILREKLGLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="15126" e_stop="14871"/>
            <exon e_start="14077" e_stop="13703"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.996"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="15126" e_stop="14871" e_length="256"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="14077" e_stop="13703" e_length="375"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15126" stop="14871"/>
              <exon start="14077" stop="13703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SSR230" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG : TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGA</gDNA_template>
            <first_frame> D  C  T  C  *  E  R  D  *  I  *  V  Q  R  R  G  F  E  E  Q  K  S  S  A  F  A  D  E  S  Y  S  Q  E  N  P  C  F  D  S  *  W  Q  T  N  L  *  V  Y  H  W  S  *  V  Y  *  *  S  V  E  G  *  S  P  F  A  P  F  *  S  L  *  E  S  T  S  *  V  L  G  *  L  H  *  Q  E   : V  I  C  Y  R  K  Q  D  L  Y  S  N  G  R  R  T  R  G  R  *  E  R  F  R  R  N  P  *  S  V  G  G  S  T  W  R  E  A  L  L  W  R  R  *  L  W  F  W  G  Y  C  S  H  W  V  L  L  L  V  S  C  L  *  G  L  W  *  L  Q  H  *  G  *  V  P  K  P  C  G  L  G  Q  E  V  H  A  K  G  Q  C  G  *  N  F  A  *  P  T  *  D  H  *  V  C  K  N  S  *  G  K  A  W  T  *  I  N  K  H  M  H  I  I  V  V  L  </first_frame>
            <second_frame>  I  A  L  A  E  K  E  I  K  Y  E  Y  R  D  E  D  L  R  N  K  S  P  L  L  L  Q  M  N  P  I  H  K  K  I  P  V  L  I  H  N  G  K  P  I  C  E  S  I  I  G  V  E  Y  I  D  E  V  W  K  D  K  A  P  L  L  P  S  D  P  Y  E  R  A  Q  A  R  F  W  A  D  Y  I  D  K  K  :  L  Y  A  T  G  S  K  I  Y  T  A  T  G  D  E  Q  E  A  G  K  K  D  F  V  E  I  L  K  V  L  E  G  A  L  G  E  K  P  Y  Y  G  G  D  N  F  G  F  G  D  I  A  L  I  G  F  Y  C  W  F  H  A  Y  E  V  Y  G  N  F  S  I  E  A  E  C  P  N  L  V  A  W  A  K  R  C  M  Q  R  D  S  V  A  K  T  L  P  D  Q  H  K  I  I  E  F  V  K  I  L  R  E  K  L  G  L  E  *  I  N  I  C  I  S  *  *  Y  * </second_frame>
            <third_frame>   L  H  L  L  R  K  R  L  N  M  S  T  E  T  R  I  *  G  T  K  V  L  C  F  C  R  *  I  L  F  T  R  K  S  L  F  *  F  I  M  A  N  Q  F  V  S  L  S  L  E  L  S  I  L  M  K  C  G  R  I  K  P  L  C  S  L  L  I  L  M  R  E  H  K  L  G  F  G  L  I  T  L  T  R  S :   Y  M  L  Q  E  A  R  F  I  Q  Q  R  E  T  N  K  R  Q  V  R  K  I  S  *  K  S  L  K  C  W  R  E  H  L  E  R  S  L  I  M  E  E  I  T  L  V  L  G  I  L  L  S  L  G  S  T  A  G  F  M  L  M  R  F  M  V  T  S  A  L  R  L  S  A  Q  T  L  W  L  G  P  R  G  A  C  K  G  T  V  W  L  K  L  C  L  T  N  I  R  S  L  S  L  *  K  F  L  G  K  S  L  D  L  N  K  *  T  Y  A  Y  H  S  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15125" stop="14871"/>
                    <exon start="14077" stop="13733"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IALAEKEIKYEYRDEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESIIGVEYIDEVWKDKAPLLPSDPYERAQARFWADYIDKKLYATGSKIYTATGDEQEAGKKDFVEILKVLEGALGEKPYYGGDNFGFGDIALIGFYCWFHAYEVYGNFSIEAECPNLVAWAKRCMQRDSVAKTLPDQHKIIEFVKILREKLGLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 10 chains have been computed
$ 
$ memory statistics:
$ 53704 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 17901 bytes was the average size of a spliced alignment
$ 6888 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3444 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 11 backtrace matrices have been allocated
$ 
$ date finished: 2007-12-13 18:18:08
-->
