<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-26 22:45:09"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0222K11-kr9vq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-PKLIkf/sgn_ests_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-PKLIkf/sgn_ests_tomato_potato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0222K11-kr9vq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0222K11.1" temp_strand="+" temp_description="C07HBa0222K11.1  AC212639.1 htgs_phase:1 submitted_to_sgn_as:gi|158262134|gb|AC212639.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0222K11, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="2611" stop="3859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2911" g_stop="3559" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0222K11.1" gen_strand="+" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0222K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2911" e_stop="3559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAAAAACTGGGAGTCTTGATAAACAGGTGGAGTTTCAAGTCATTCAGAACGAAAGAGATTTGAAAGAACCTGAAGAGGAGGATCAAGAGCCACAGACAAAAACCGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCAGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGATGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTGAGTCCCGATTCTGAAAAATGGTTTGCTGCTATGATAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGTAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTACACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-PKLIkf/sgn_ests_tomato_potato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0222K11-kr9vq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0222K11.1" temp_strand="+" temp_description="C07HBa0222K11.1  AC212639.1 htgs_phase:1 submitted_to_sgn_as:gi|158262134|gb|AC212639.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0222K11, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="2612" stop="3596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2912" g_stop="3296" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0222K11.1" gen_strand="+" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0222K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2912" e_stop="3296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAAAAACTGGGAGTCTTGATAAACAGGTGGAGTTTCAAGTCATTCAGAACGAAAGAGATTTGAAAGAACCTGAAGAGGAGGATCAAGAGCCACAGACAAAAACCGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCAGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGATGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTGAGTCCCGATTCTGAAAAATGGTTTGCTGCTATGATAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-PKLIkf/sgn_ests_tomato_potato" ref_id="SGN-E368125" ref_strand="-" ref_description="SGN-E368125 [TUS-22-A12]">
      <seq>actttttttttttccttacaattttcccctatatataatcaaaaatctataaatgaaaaatttttttcccaatgaaaaatttttttcccagggggtagtttttttcgccttgatatcaaaaaaataagtggattgaaaaaaaccccccccaatcggatattttttaaaaaaaattattttttttaaaaaaacgggttaaatcaattttttcattcgatttgacttttattttttttttatatttatagtcaaaaatcaatatatgtaaccctcccaatgatatttcagtgtttgatatttttttgcttaaataaacaaattgaaaaaaatttgcatcgatcggacatcaaaggcccggataaattgggctttgcaattggtttgaaaaatatgaaaacttcccataataagtcaacgttggacttttgattttttataaacttcaatgtaacataaaaataaattgcccaattttgttttgtccttattgttagtatttgaaatcctaagtggtatgtttttttttgtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0222K11-kr9vq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0222K11.1" temp_strand="-" temp_description="C07HBa0222K11.1  AC212639.1 htgs_phase:1 submitted_to_sgn_as:gi|158262134|gb|AC212639.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0222K11, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="42443" stop="38514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42143" g_stop="41620" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="531" polyA_stop="577"/>
      <MATCH_line gen_id="C07HBa0222K11.1" gen_strand="-" ref_id="SGN-E368125" ref_strand="-">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0222K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368125" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42143" e_stop="41620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTATTTTTTCCTTACAATTTTACCCTATATATAATCAAAAATCTATAAATGAAAAATTATTATCACAATGAAAAATTATTATCGCAGTGTGTAGTTTTTTTCGCATTGATATCAAAAAAATAAGTCGATTGAAAAAAACCCGCCTCAATCGGATATCTTTTAAATGAAATTATTTTTTCTAGATATACGTGTTAAATCAATTTTCTCATTCGATTTGACTTTTATTTTTTTCTTATATTTATAGTCAAAAATCAATATATGTAACACTACCAATGATATCTCAGTGTTTGATATTTTTTCGCTTAGATAAGCAGATTGAAAAAAATTTGCATCGATCGGACATCAGAGGCACGGATAAATTGGACTTTGCAATTGTNNTGAAGAATATGAAAACTTCACATAATAAGTCAACGTTGTACTTTTGATTTTCTATAAACTTCAATGTAACATAGAAATAAATTGCACAATTTTGTTTTGTCCTTATTGTTAGTATTTGAAATCCTAAGTGGTATGTCTATTT</genome_strand>
        <mrna_strand>ACTTTTTTTTTTTCCTTACAATTTTCCCCTATATATAATCAAAAATCTATAAATGAAAAATTTTTTTCCCAATGAAAAATTTTTTTCCCAGGGGGTAGTTTTTTTCGCCTTGATATCAAAAAAATAAGTGGATTGAAAAAAACCCCCCCCAATCGGATATTTTTTAAAAAAAATTATTTTTTTTAAAAAAACGGGTTAAATCAATTTTTTCATTCGATTTGACTTTTATTTTTTTTTTATATTTATAGTCAAAAATCAATATATGTAACCCTCCCAATGATATTTCAGTGTTTGATATTTTTTTGCTTAAATAAACAAATTGAAAAAAATTTGCATCGATCGGACATCAAAGGCCCGGATAAATTGGGCTTTGCAATTGGTTTGAAAAATATGAAAACTTCCCATAATAAGTCAACGTTGGACTTTTGATTTTTTATAAACTTCAATGTAACATAAAAATAAATTGCCCAATTTTGTTTTGTCCTTATTGTTAGTATTTGAAATCCTAAGTGGTATGTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-PKLIkf/sgn_ests_tomato_potato" ref_id="SGN-E235551" ref_strand="+" ref_description="SGN-E235551 [cLED-11-B24]">
      <seq>gggtagaagcaattctttttttaaagttgcttattgtttttagttctacgtggtaatttcaattagcttattcgatttgactttatgttttccttataaattatatatggtcaaaaatcgataaatataaaactaaaaatcctatctcagttttcgagatatacgtggtaaagtcaattaccttattcgatttgactttcatattttgatattatcctatatatgatcaaacctataaatgtaaaactatagatcctataaaattgtgtagtgttttttcacgtagttatagaaaaattagcaaattgaaaaaaatagtctcgatcaaacgtcgggggcacgatttatgtcgattcatttttaaaatttgcttattgttttgaaatatacattgtaaactcaatttccttatccgattgaacttttattttttccttacaattttaccctatatataatcaaaaatctataaatgaaaaattattatcacaatgaaaaattattatcgcagtgtgtagtttttttcgcattgatatcaaaaaaataagtggattgaaaaaaacccgcctcaatcggatatcttttaaatgaaattattttttctagatatacgtgttaaatcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0222K11-kr9vq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0222K11.1" temp_strand="-" temp_description="C07HBa0222K11.1  AC212639.1 htgs_phase:1 submitted_to_sgn_as:gi|158262134|gb|AC212639.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0222K11, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="42863" stop="41639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42563" g_stop="41939" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0222K11.1" gen_strand="-" ref_id="SGN-E235551" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0222K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42563" e_stop="41939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTAGAAGCAATTTTTTTTGTGAAGGTTGCTATTGTTNTTAGTTNTACGTGGTAATTTCAATTAGCTTATTCGATTTGACTTTATGTTTTCCTTATAGATTATATATGGTCAAAAATCGATAAATATAGAACTAAAAATCCTATCTCAGTTTTCGAGATATACGTGGTAAAGTCAATTACCTTATTCGATTTGACTTTCATATTTTGATATTATCCTATATATGATCAAACCTATAAATGTAAAACTATAGATCCTATAAAATTGTGTAGTGTTTTTTCACGTAGTTATAGAAAAATTAGCAAATTGAAAAAAATAGTCTCGATCAAACGTCGGGGGCACGATTTATGTCGATTCATTTTTAAAATTTGCTTATTGTTTTGAAATATACATTGTAAACTCAATTTCCTTATCCGATTGAACTTTTATTTTTTCCTTACAATTTTACCCTATATATAATCAAAAATCTATAAATGAAAAATTATTATCACAATGAAAAATTATTATCGCAGTGTGTAGTTTTTTTCGCATTGATATCAAAAAAATAAGTCGATTGAAAAAAACCCGCCTCAATCGGATATCTTTTAAATGAAATTATTTTTTCTAGATATACGTGTTAAATCAAT</genome_strand>
        <mrna_strand>GGGTAGAAGCAATTCTTTTTTTAAAGTTGCTTATTGTTTTTAGTTCTACGTGGTAATTTCAATTAGCTTATTCGATTTGACTTTATGTTTTCCTTATAAATTATATATGGTCAAAAATCGATAAATATAAAACTAAAAATCCTATCTCAGTTTTCGAGATATACGTGGTAAAGTCAATTACCTTATTCGATTTGACTTTCATATTTTGATATTATCCTATATATGATCAAACCTATAAATGTAAAACTATAGATCCTATAAAATTGTGTAGTGTTTTTTCACGTAGTTATAGAAAAATTAGCAAATTGAAAAAAATAGTCTCGATCAAACGTCGGGGGCACGATTTATGTCGATTCATTTTTAAAATTTGCTTATTGTTTTGAAATATACATTGTAAACTCAATTTCCTTATCCGATTGAACTTTTATTTTTTCCTTACAATTTTACCCTATATATAATCAAAAATCTATAAATGAAAAATTATTATCACAATGAAAAATTATTATCGCAGTGTGTAGTTTTTTTCGCATTGATATCAAAAAAATAAGTGGATTGAAAAAAACCCGCCTCAATCGGATATCTTTTAAATGAAATTATTTTTTCTAGATATACGTGTTAAATCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-PKLIkf/sgn_ests_tomato_potato" ref_id="SGN-E368126" ref_strand="+" ref_description="SGN-E368126 [TUS-22-A12]">
      <seq>gggtagaagcaattctttttttaaagttgcttattgtttttagttctacgtggtaatttcaattagcttattcgatttgactttatgttttccttataaattatatatggtcaaaaatcgataaatataaaactaaaaatcctatctcagttttcgagatatacgtggtaaagtcaattaccttattcgatttgactttcatattttgatattatcctatatatgatcaaacctataaatgtaaaactatagatcctataaaattgtgtagtgttttttcacgtagttatagaaaaattagcaaattgaaaaaaatagtctcgatcaaacgtcgggggcacgatttatgtcgattcatttttaaaatttgcttattgttttgaaatatacattgtaaactcaatttccttattcgattgaacttttattttttccttacaattttaccctatatataatcaaaaatctataaatgaaaaattattatcacaatgaaaaattattatcgcagtgtgtagtttttttcgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0222K11-kr9vq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0222K11.1" temp_strand="-" temp_description="C07HBa0222K11.1  AC212639.1 htgs_phase:1 submitted_to_sgn_as:gi|158262134|gb|AC212639.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0222K11, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="42863" stop="41733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42563" g_stop="42033" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0222K11.1" gen_strand="-" ref_id="SGN-E368126" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0222K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42563" e_stop="42033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTAGAAGCAATTTTTTTTGTGAAGGTTGCTATTGTTNTTAGTTNTACGTGGTAATTTCAATTAGCTTATTCGATTTGACTTTATGTTTTCCTTATAGATTATATATGGTCAAAAATCGATAAATATAGAACTAAAAATCCTATCTCAGTTTTCGAGATATACGTGGTAAAGTCAATTACCTTATTCGATTTGACTTTCATATTTTGATATTATCCTATATATGATCAAACCTATAAATGTAAAACTATAGATCCTATAAAATTGTGTAGTGTTTTTTCACGTAGTTATAGAAAAATTAGCAAATTGAAAAAAATAGTCTCGATCAAACGTCGGGGGCACGATTTATGTCGATTCATTTTTAAAATTTGCTTATTGTTTTGAAATATACATTGTAAACTCAATTTCCTTATCCGATTGAACTTTTATTTTTTCCTTACAATTTTACCCTATATATAATCAAAAATCTATAAATGAAAAATTATTATCACAATGAAAAATTATTATCGCAGTGTGTAGTTTTTTTCGCATT</genome_strand>
        <mrna_strand>GGGTAGAAGCAATTCTTTTTTTAAAGTTGCTTATTGTTTTTAGTTCTACGTGGTAATTTCAATTAGCTTATTCGATTTGACTTTATGTTTTCCTTATAAATTATATATGGTCAAAAATCGATAAATATAAAACTAAAAATCCTATCTCAGTTTTCGAGATATACGTGGTAAAGTCAATTACCTTATTCGATTTGACTTTCATATTTTGATATTATCCTATATATGATCAAACCTATAAATGTAAAACTATAGATCCTATAAAATTGTGTAGTGTTTTTTCACGTAGTTATAGAAAAATTAGCAAATTGAAAAAAATAGTCTCGATCAAACGTCGGGGGCACGATTTATGTCGATTCATTTTTAAAATTTGCTTATTGTTTTGAAATATACATTGTAAACTCAATTTCCTTATTCGATTGAACTTTTATTTTTTCCTTACAATTTTACCCTATATATAATCAAAAATCTATAAATGAAAAATTATTATCACAATGAAAAATTATTATCGCAGTGTGTAGTTTTTTTCGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-PKLIkf/sgn_ests_tomato_potato" ref_id="SGN-E283948" ref_strand="+" ref_description="SGN-E283948 [cLER-13-J1]">
      <seq>aaaaaccattttgagaacaaagtgaggtattccataaactatacaagaaaaataatctatgaagaaaaatagagtgtgagcgatattttagtaaggtggaaaccaaaagagtgttgttccttttgagtgtgtattagttactttgagtattgtattcgtgactacacagtttaaaactctttactatattaatatcagttgctcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0222K11-kr9vq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0222K11.1" temp_strand="+" temp_description="C07HBa0222K11.1  AC212639.1 htgs_phase:1 submitted_to_sgn_as:gi|158262134|gb|AC212639.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0222K11, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="51131" stop="51937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51431" g_stop="51637" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0222K11.1" gen_strand="+" ref_id="SGN-E283948" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0222K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51431" e_stop="51637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACTATTTTGAGAGCAAAGTGAGGTATTCCATAGACTATATAAGAA-AATAGTCTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTGTTGTATTCGTGACTACACAGTGTAAAATTCCTTACTATAATAATATCAATTGCTCCTCT</genome_strand>
        <mrna_strand>AAAAACCATTTTGAGAACAAAGTGAGGTATTCCATAAACTATACAAGAAAAATAATCTATGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGGTGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTATTAGTTACTTTGAGTATTGTATTCGTGACTACACAGTTTAAAACTCTTTACTATATTAATATCAGTTGCTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-PKLIkf/sgn_ests_tomato_potato" ref_id="SGN-E284128" ref_strand="+" ref_description="SGN-E284128 [cLER-13-D2]">
      <seq>gattttggaaccttgagtatgggtaaaaagactgtttctagggtggttggtattggtacaatttgtttggaaactagtattggaactaaactagttttgaacaatgtgaaacatgctcttgatgttcgtctgcacctaatttctgttggtgttttagatgatgaaggatatgttagtaccaacggtgatggaaaatggaagctcattaagggttccttggttgtggctcgtggtaacaaacgtcgtggtcaatactggactacggcctctgcttgttgatatggtgaatgcggttgaaagcgatagctcttcaacattatggctcctcgttggccngtggtttttttccttattcagaagggcttccacgtaaaattattggtgtcgttattttctcattttatttccattacatttaccatatatacttttatgcttgtccgtgttttcccaataggaatgacttgatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0222K11-kr9vq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0222K11.1" temp_strand="+" temp_description="C07HBa0222K11.1  AC212639.1 htgs_phase:1 submitted_to_sgn_as:gi|158262134|gb|AC212639.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0222K11, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="52519" stop="56769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52819" g_stop="53141" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53142" i_stop="56335" i_length="3194">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56336" g_stop="56468" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="455" r_length="134" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0222K11.1" gen_strand="+" ref_id="SGN-E284128" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0222K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52819" e_stop="53141"/>
          <exon e_start="56336" e_stop="56468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTGGAACCTTGAGTATGGGTAATGAGACTGTTTCTAGGGTGGTTGGTATTGGTACAATTTGTTTGGAAACTAGTGTTGGAACTAAACTAGTTTTGAACAATGTGAAACATGCTCCTGATGTTCGTCTGCACCTAATTTCTGTTGGTGTTTTAGATGATGAAGGATATGTTAGTACCAACGGTGATGGAAAATGGAAGCTCATTAAGGGTTCCTTGGTTGTGGCTCGTGGTAACAAACAGCGTGATCTATACTGGACTACGGCCTCTGCTTGTGTTGATATGGTGAATGCGGTTGAGAGCGATAGCTCTTCAACATTATGGCACAAGAGGCTTAGCCACATTAGCGAGAAAGGACTTAATGTTCTAGCCAAGAAGAAATTATTGTCAAATTTCCAAAGTGCTAAATTAGAAAAATGTGAGCACTGCTTGGCTGGTAAACAAAATAGAGTTTCCTTTAAGTCCTACCCTCCTTCGAGAAAGACAGAGTTGCTTGAGTTAGTGCACTCTGATTTATGTGGTCCAATGAAGACAAAGACATTGGGTGGTGCACTTTACTTTGTCACTTTCATTGATGATTGCTCGAGAAAACTTTGGGTCTATGTCTTGAAGACTAAAGACCAAGTGTTAGGTGTCTTTAAGCAGTTTCAGGCTTCAGTTGAAAGAGAAACTGGAAAGAAATTGAAATGTATTCGTACTGATAATGGTGGTGAATATTGTGGACCATTTGACGAATACTGCAAGCATCAAGGTATTAGACACCAGAAGACTCCTCCCAAGACTCCTCAGCTTAATGGTTTGGCTGAGAGGATGAACAGGACCTTGATGGAAAGAGTTAGATGTTTGCTTTCTGAAGCAAAGTTGCCAAACTCATTTTGGGGTGAGGCTTTATTGACCGCTGCACATGTTATTAATCTATCTCCTGCTGTTGCTTTGCAAAGTGATGTACCAAATAGTGTTTGGTATAGAAAGGATGTTTCCTATGACCACTTGAGAGTATTTGGTTGCAAAGCTTTTGTACATGTGCCGAAAGATGAGAGGTCAAAATTAGATGTCAAGACAAGGCAATGCATCTTCATTGGATATGGCCTAGATGAATTTGGTTACAGGCTATATGATCCAATTGAAAAGAAACTTGTGAGAAGCCGTGATATTATTTTCATGGAGAATCAAACAATTGAAGATATTGACAAAGCGGAGAAGGTAGAATCTTCAAATTTTGATGGTATAGTCCATCATGATGAAGTTCCTCACACAAGTGTGCATGATGTTATTGGATTTGATAATCATGGTGACGCCCAGAATTATGTATCAAATCAACATGTTGATGTTGATAATAACAATGATATTGTTATTGATGATCCTGTTGTTCATGAAGTTGTGGACGAATCAAATATTCCGCTTCGGAGGTCCACAAGACAGCGGTTTCCTTCCTCCCGCAATGAGTATGTGTTACTCACTGACGGGGGAGAACCTCAATGTTATGAGGAGGCCATGGAAGATGAGCACAAGAATCAATGGATTGAAGCCATGCAAGACGAGATGAATTCTTTGCATGAGAACCACACTTATGAGTTGGTAAAATTTCCCAAGGGCATGAGATCTTTGAAGAACAAGTGGGTGTTCAAAGTTAAAGTTGAAGAACACAACTTGAAGCCCAGGTACAAATCTAGATTGGTTGTTAAGGGATTCGGTCAAAGGAAAGGTATTGACTTTGACGAAATATTTTCTCCTGTTGTGAAAATATCCTCGATTCGCACAGTTCTAGGTTTGGCTGCTAGTCTTAATTTAGAGATTGAGCAGATGGATGTGAAGACGGATTTCCTTCACGGTGACCTAGAAGAAGAGATTTATATGGAACAACCTGAGGGCTTCAAAGTAGATGGTAAAGAAAATTTTGTATGCAAACTCAAAAAGAGTCTCTATGGCCTAAAACAAGCTCCTAGACAGTGGTACAAAAAGTTTGAATATGTTATGGGGGAGCAAGGCTATAAGAAGACTTCTTCAGATCATTGCGTATTTTGTACAAAAATTTTCTGACAATGATTTTATCATCCTTTTGTTGTATGTAGATGATATGTTGATTGTGGGCAAAAATACTTCCAAGATTGACGAGCTAAAGAAAGAGTTGTGTAAGTCTTTTTCTATGAAAGACTTGGGTCATGCCAAGCAAATTTTGGGCATGAGAATTACTCGTCTTAGAGATAAAAGGAAGATTTATTTGTCCCAGAAGAAGTACATTGAACGCGTACTGGAGCGCTTCAATATGAAGAATGCTAAGCCTGTTAGTGTACCTCTTGCTGGTCATATGAAGTTGAGCAAGAAGATGTGTCCTACAGCTAGGGAGGAAAAAGAGAATATGGCCAAAGTTCCATATTCCTCCGTCGTCGGAAGTCTAATGTATGCAATGGTGTGCACTAGACCTGATATTGCTCACGCAGTTGGTGTTGTCAGTAGATTTCTCAAAAATCCGGGAAAAGAGCATTGCGAAGCTGTGAAATGGATACTTAGGTATCTTAGAGGAAGCTCAGATGAATGCTTGTGTTTTGGAGCATCAAATCCAATCTTGAAAGGCTACACAGATTCTGATATGGCAGGTGACCTTGATAACAGAAAATCCACTACTAGATATTTGTTTACTTTTTCAGGGGGAGCTATATCATGGCAGCCAAAGTTGCAGAAGTGTGTTGCACTATCTACAACTGAAGCTGAGTATATTGCGCTACTGAAGCCGGCAAGGAGATGATATGGCTAAAGCGATTTCTTCAAGAGCTTGGTTTGAATCAGATGGAGTATATTGTCTATTGTGACAGTCAGAGTGCAATAGACTTGAGCAAGAACTCCATGTACCATGCAAGAAAAAAACACATTGACGTCAGATATCATTGGATTCGTGAGAAAGTGGAGAATGAATCATTTCACGTCAAAAAGATTCACACAAGTGAAAATCCTGCAGATATGCTGACCAAGATGATACCAAAAGACAAGTTCGAGTTATGCAAAGAACTTGTGGGCATGAGCTCTCTCTAAAGAAGTTGAAGATACCTTCTTCCAGTAAATGGGACTGGAGGGGGAGATTTGTTGAATCCATCCCATTGTTTTAATCAACTTTAGCTATTCAATTGGTACAAGCAATTGTTAAAAATGAATAGTAATTGGAGTTGAAAAGAAAAGATTTGGTAGTTGGCAAATTGGTAAGATTTGCAACCATTTTTGACTTTGCTATGTTTACATATGTCATTAGTGACATATGTATGATTTTATCCTTCTATAAATAGAGCATTCTTGCTCATTTGTAGAACACACCAAGTTAGAGAGAAAAACCATTTTGAGAGCAAAGTGAGGTATTCCATAGACTATATAAGAAAATAGTCTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGAAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTGTTGTATTCGTGACTACACAGTGTAAAATTTCTTACTATAATAATATCAATTGCTCCTC-TTGGCCCGTGGTTTTTTCCCTTATTCAGAAGGGTTTCCACGTAAAATTCTTGGTGTCGTAATTTTCCCATTTTATTTCCATTACTTTTACCATATATACTTTTGTGCTTGTCCGCGTTTTCCCAAC</genome_strand>
        <mrna_strand>GATTTTGGAACCTTGAGTATGGGTAAAAAGACTGTTTCTAGGGTGGTTGGTATTGGTACAATTTGTTTGGAAACTAGTATTGGAACTAAACTAGTTTTGAACAATGTGAAACATGCTCTTGATGTTCGTCTGCACCTAATTTCTGTTGGTGTTTTAGATGATGAAGGATATGTTAGTACCAACGGTGATGGAAAATGGAAGCTCATTAAGGGTTCCTTGGTTGTGGCTCGTGGTAACAAACGTCGTGGTCAATACTGGACTACGGCCTCTGC-T-TGTTGATATGGTGAATGCGGTTGAAAGCGATAGCTCTTCAACATTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCTCGTTGGCCNGTGGTTTTTTTCCTTATTCAGAAGGGCTTCCACGTAAAATTATTGGTGTCGTTATTTTCTCATTTTATTTCCATTACATTTACCATATATACTTTTATGCTTGTCCGTGTTTTCCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-PKLIkf/sgn_ests_tomato_potato" ref_id="SGN-E539305" ref_strand="-" ref_description="SGN-E539305 [TUS-58-P24]">
      <seq>gaaaatccatgttgagagcaaagtgaggtatttcatagactatacaagaaaatagtgtgtgaagaataatagaatgtgagcgatattttagtaagacggaaatcaaaagagtgttgttccttttgagtgtgtagtattcactttgagtattgtattcgtgactacacaatgtaaaattccttattatagtaatatcagttgctcctctcggctcgtgattttttcccttattcagaagggtttccacgtaaaattcttggtgtcgttattttcctattttatttccattatttttatcatatatatttttgtgctcgtctgcgttttcccaacagacacctcattcatttatctattttcttttcttttgttaaaaaaaaaaaaaaaaaactcgaggggggcccgtaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0222K11-kr9vq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0222K11.1" temp_strand="+" temp_description="C07HBa0222K11.1  AC212639.1 htgs_phase:1 submitted_to_sgn_as:gi|158262134|gb|AC212639.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0222K11, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="55836" stop="72682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56136" g_stop="56484" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56485" i_stop="56927" i_length="443">
            <donor d_prob="0.000" d_score="0.78"/>
            <acceptor a_prob="0.985" a_score="0.47"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56928" g_stop="56970" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="389" r_length="41" r_score="0.465"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56971" i_stop="57245" i_length="275">
            <donor d_prob="1.000" d_score="0.47"/>
            <acceptor a_prob="0.578" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57246" g_stop="57268" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="411" r_length="22" r_score="0.522"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0222K11.1" gen_strand="+" ref_id="SGN-E539305" ref_strand="-">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0222K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539305" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56136" e_stop="56484"/>
          <exon e_start="56928" e_stop="56970"/>
          <exon e_start="57246" e_stop="57268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACCATTTTGAGAGCAAAGTGAGGTATTCCATAGACTATATAAGAAAATAGTCTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGAAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTGTTGTATTCGTGACTACACAGTGTAAAATTTCTTACTATAATAATATCAATTGCTCCTCTTGGCCCGTGGTTTTTTCCCTTATTCAGAAGGGTTTCCACGTAAAATTCTTGGTGTCGTAATTTTCCCATTTTATTTCCATTACTTTTACCATATATACTTTTGTGCTTGTCCGCGTTTTCCCAACATTGAGAATTATTCAGATGATTTAGACTTGGATATTCTAAACGCGTCCCTTTCTGAAACTGCCGAGCCACCATCAGATTTCATCATGTCACTAATGCCGATAAAGACTTTAACACTCTTTATTAATGTCAATATTTAATGCCGCTAAAAGTTGTCTTTGTGTTGTAGTGACCAACTCTTTTTTTCTCCCTTCTTTTCTTAGCCAAACGATTTTTTTGTTTGACATGTTTGTAACCCCTATCACCATGGATTGTTCGTTTGTAAGTATTCATATGTAGCAACTAATCGTGAATCGAATTATATTTTGGTTACATTTTTTTAGTATGTGCTATCACTAATAATTATGACTTTTATTTGTCTTTAGACGTTTTTTCTTATTTTTTCTATCCACTCTCTGTAGCAATATGTACTTTTATGCCATAAATTTATGTTTTCTTCTACCTATATATGTAAATGATAGGTTTTGAGGCTCTTCACCGCTTGCATCAATGAAGAGGAAGATGGTAAGTTAGTTCTCAATTTCTCTGTATCTTACAATATCTTACTTTATAAATTATTTTAGCTAGATTGTGTTGAACAATAATGTCGATGTAGAGAGGAATATTTAATCCACTGAATTCATATATTATATTACAAAGTGAACGTCGACAAGAAAATGGAAATGGCAAATCATCATTTGAACCCATCAATGAAGGTGCTTCAGTCGTAAACTAATTTTATCCAAAAAAAAAAAAAGGATAGAAGACCCAAAACTTTGAACTTTGATTCATTCACATAGGAAGGGAAAAAGGTCCAAACCCA</genome_strand>
        <mrna_strand>GAAAATCCATGTTGAGAGCAAAGTGAGGTATTTCATAGACTATACAAGAAAATAGTGTGTGAAGAATAATAGAATGTGAGCGATATTTTAGTAAGACGGAAATCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTATTCACTTTGAGTATTGTATTCGTGACTACACAATGTAAAATTCCTTATTATAGTAATATCAGTTGCTCCTCTCGGCTCGTGATTTTTTCCCTTATTCAGAAGGGTTTCCACGTAAAATTCTTGGTGTCGTTATTTTCCTATTTTATTTCCATTATTTTTATCATATATATTTTTGTGCTCGTCTGCGTTTTCCCAACAGACA-CCTCATTCAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCTATTTTCTT-TTCTTTTG-TTAAAAAAAAAAAAAAAAA...................................................................................................................................................................................................................................................................................-ACTCGAGGGGGGCCCGTACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-PKLIkf/sgn_ests_tomato_potato" ref_id="SGN-E539303" ref_strand="-" ref_description="SGN-E539303 [TUS-58-P23]">
      <seq>gaaaatccatgttgagagcaaagtgaggtatttcatagactatacaagaaaatagtgtgtgaagaataatagaatgtgagcgatattttagtaagacggaaatcaaaagagtgttgttccttttgagtgtgtagtattcactttgagtattgtattcgtgactacacaatgtaaaattccttattatagtaatatcagttgctcctctcggctcgtgattttttcccttattcagaagggtttccacgtaaaattcttggtgtcgttattttcctattttatttccattatttttatcatatatatttttgtgctcgtctgcgttttcccaacagacacctcattcatttatctattttttttcttttgttaaaaaaaaaaaaaaaaaactcgaggggggcccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0222K11-kr9vq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0222K11.1" temp_strand="+" temp_description="C07HBa0222K11.1  AC212639.1 htgs_phase:1 submitted_to_sgn_as:gi|158262134|gb|AC212639.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0222K11, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="55836" stop="72682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56136" g_stop="56484" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56485" i_stop="56975" i_length="491">
            <donor d_prob="0.000" d_score="0.78"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56976" g_stop="56993" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="365" r_length="17" r_score="0.611"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56994" i_stop="57178" i_length="185">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.55"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57179" g_stop="57218" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="405" r_length="40" r_score="0.550"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0222K11.1" gen_strand="+" ref_id="SGN-E539303" ref_strand="-">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0222K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539303" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56136" e_stop="56484"/>
          <exon e_start="56976" e_stop="56993"/>
          <exon e_start="57179" e_stop="57218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACCATTTTGAGAGCAAAGTGAGGTATTCCATAGACTATATAAGAAAATAGTCTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGAAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTGTTGTATTCGTGACTACACAGTGTAAAATTTCTTACTATAATAATATCAATTGCTCCTCTTGGCCCGTGGTTTTTTCCCTTATTCAGAAGGGTTTCCACGTAAAATTCTTGGTGTCGTAATTTTCCCATTTTATTTCCATTACTTTTACCATATATACTTTTGTGCTTGTCCGCGTTTTCCCAACATTGAGAATTATTCAGATGATTTAGACTTGGATATTCTAAACGCGTCCCTTTCTGAAACTGCCGAGCCACCATCAGATTTCATCATGTCACTAATGCCGATAAAGACTTTAACACTCTTTATTAATGTCAATATTTAATGCCGCTAAAAGTTGTCTTTGTGTTGTAGTGACCAACTCTTTTTTTCTCCCTTCTTTTCTTAGCCAAACGATTTTTTTGTTTGACATGTTTGTAACCCCTATCACCATGGATTGTTCGTTTGTAAGTATTCATATGTAGCAACTAATCGTGAATCGAATTATATTTTGGTTACATTTTTTTAGTATGTGCTATCACTAATAATTATGACTTTTATTTGTCTTTAGACGTTTTTTCTTATTTTTTCTATCCACTCTCTGTAGCAATATGTACTTTTATGCCATAAATTTATGTTTTCTTCTACCTATATATGTAAATGATAGGTTTTGAGGCTCTTCACCGCTTGCATCAATGAAGAGGAAGATGGTAAGTTAGTTCTCAATTTCTCTGTATCTTACAATATCTTACTTTATAAATTATTTTAGCTAGATTGTGTTGAACAATAATGTCGATGTAGAGAGGAATATTTAATCCACTGAATTCATATATTATATTACAAAGTGAACGTCGACAAGAAAATGGAAATGGCAAATCATCATTTGAACCCATCAATGAAGGTGCTTCAGTCGTAAACTAATTTTATCCAAAAAAAAAAAAAGGATAGAAGACCCAAA</genome_strand>
        <mrna_strand>GAAAATCCATGTTGAGAGCAAAGTGAGGTATTTCATAGACTATACAAGAAAATAGTGTGTGAAGAATAATAGAATGTGAGCGATATTTTAGTAAGACGGAAATCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTATTCACTTTGAGTATTGTATTCGTGACTACACAATGTAAAATTCCTTATTATAGTAATATCAGTTGCTCCTCTCGGCTCGTGATTTTTTCCCTTATTCAGAAGGGTTTCCACGTAAAATTCTTGGTGTCGTTATTTTCCTATTTTATTTCCATTATTTTTATCATATATATTTTTGTGCTCGTCTGCGTTTTCCCAACAGACA-CCTCATTCAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCTAT-TTTTTTTCT.........................................................................................................................................................................................TTTGTTAAAAAAAAAAAAAAAAAACTCGAGGGGGGCCCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-PKLIkf/sgn_ests_tomato_potato" ref_id="SGN-E283948" ref_strand="+" ref_description="SGN-E283948 [cLER-13-J1]">
      <seq>aaaaaccattttgagaacaaagtgaggtattccataaactatacaagaaaaataatctatgaagaaaaatagagtgtgagcgatattttagtaaggtggaaaccaaaagagtgttgttccttttgagtgtgtattagttactttgagtattgtattcgtgactacacagtttaaaactctttactatattaatatcagttgctcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0222K11-kr9vq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0222K11.1" temp_strand="+" temp_description="C07HBa0222K11.1  AC212639.1 htgs_phase:1 submitted_to_sgn_as:gi|158262134|gb|AC212639.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0222K11, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="55837" stop="56643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56137" g_stop="56343" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0222K11.1" gen_strand="+" ref_id="SGN-E283948" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0222K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56137" e_stop="56343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCATTTTGAGAGCAAAGTGAGGTATTCCATAGACTATATAAG-AAAATAGTCTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGAAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTGTTGTATTCGTGACTACACAGTGTAAAATTTCTTACTATAATAATATCAATTGCTCCTCT</genome_strand>
        <mrna_strand>AAAAACCATTTTGAGAACAAAGTGAGGTATTCCATAAACTATACAAGAAAAATAATCTATGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGGTGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTATTAGTTACTTTGAGTATTGTATTCGTGACTACACAGTTTAAAACTCTTTACTATATTAATATCAGTTGCTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-PKLIkf/sgn_ests_tomato_potato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0222K11-kr9vq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0222K11.1" temp_strand="-" temp_description="C07HBa0222K11.1  AC212639.1 htgs_phase:1 submitted_to_sgn_as:gi|158262134|gb|AC212639.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0222K11, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="60091" stop="58684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59791" g_stop="58984" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0222K11.1" gen_strand="-" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0222K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59791" e_stop="58984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAATCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCTGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTAATGTATGCTATGGTCTGTACAAGGCCAGATTTAGAACATGCAGTCAGTGTAGTGAGCAGATTCATAGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-PKLIkf/sgn_ests_tomato_potato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0222K11-kr9vq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0222K11.1" temp_strand="-" temp_description="C07HBa0222K11.1  AC212639.1 htgs_phase:1 submitted_to_sgn_as:gi|158262134|gb|AC212639.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0222K11, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="60750" stop="59502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60450" g_stop="59802" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0222K11.1" gen_strand="-" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0222K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60450" e_stop="59802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAATGAGAGAGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTAAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-PKLIkf/sgn_ests_tomato_potato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0222K11-kr9vq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0222K11.1" temp_strand="-" temp_description="C07HBa0222K11.1  AC212639.1 htgs_phase:1 submitted_to_sgn_as:gi|158262134|gb|AC212639.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0222K11, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="60749" stop="59765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60449" g_stop="60065" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0222K11.1" gen_strand="-" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0222K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60449" e_stop="60065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAATGAGAGAGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTAAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>13</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2911" PGL_stop="3559"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2911" e_stop="3559"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="2911" e_stop="3559" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2911" stop="3559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2912" stop="3296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACGTCAAAAACTGGGAGTCTTGATAAACAGGTGGAGTTTCAAGTCATTCAGAACGAAAGAGATTTGAAAGAACCTGAAGAGGAGGATCAAGAGCCACAGACAAAAACCGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCAGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGATGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTGAGTCCCGATTCTGAAAAATGGTTTGCTGCTATGATAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGTAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTACACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  K  N  W  E  S  *  *  T  G  G  V  S  S  H  S  E  R  K  R  F  E  R  T  *  R  G  G  S  R  A  T  D  K  N  R  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  C  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  E  S  R  F  *  K  M  V  C  C  Y  D  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  Y  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  K  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  R  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  K  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  Q  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  D  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  P  D  S  E  K  W  F  A  A  M  I  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  V  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  T  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  I  N  R  W  S  F  K  S  F  R  T  K  E  I  *  K  N  L  K  R  R  I  K  S  H  R  Q  K  P  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  S  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  M  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  P  I  L  K  N  G  L  L  L  *  *  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  *  K  E  S  S  I  K  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0222K11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2912" stop="3559"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSKTGSLDKQVEFQVIQNERDLKEPEEEDQEPQTKTDIPESMPSDIHQSIAQDRPRRVGVQPPTRYGFEDMVGYALQVAEDVDTSEPSTYKEAILSPDSEKWFAAMIDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPVEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVTHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="42563" PGL_stop="41620"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42563" e_stop="41620"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="42563" e_stop="41620" e_length="944"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42563" stop="41939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42563" stop="42033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42143" stop="41620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368125" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGTAGAAGCAATTTTTTTTGTGAAGGTTGCTATTGTTNTTAGTTNTACGTGGTAATTTCAATTAGCTTATTCGATTTGACTTTATGTTTTCCTTATAGATTATATATGGTCAAAAATCGATAAATATAGAACTAAAAATCCTATCTCAGTTTTCGAGATATACGTGGTAAAGTCAATTACCTTATTCGATTTGACTTTCATATTTTGATATTATCCTATATATGATCAAACCTATAAATGTAAAACTATAGATCCTATAAAATTGTGTAGTGTTTTTTCACGTAGTTATAGAAAAATTAGCAAATTGAAAAAAATAGTCTCGATCAAACGTCGGGGGCACGATTTATGTCGATTCATTTTTAAAATTTGCTTATTGTTTTGAAATATACATTGTAAACTCAATTTCCTTATCCGATTGAACTTTTATTTTTTCCTTACAATTTTACCCTATATATAATCAAAAATCTATAAATGAAAAATTATTATCACAATGAAAAATTATTATCGCAGTGTGTAGTTTTTTTCGCATTGATATCAAAAAAATAAGTCGATTGAAAAAAACCCGCCTCAATCGGATATCTTTTAAATGAAATTATTTTTTCTAGATATACGTGTTAAATCAATTTTCTCATTCGATTTGACTTTTATTTTTTTCTTATATTTATAGTCAAAAATCAATATATGTAACACTACCAATGATATCTCAGTGTTTGATATTTTTTCGCTTAGATAAGCAGATTGAAAAAAATTTGCATCGATCGGACATCAGAGGCACGGATAAATTGGACTTTGCAATTGTNNTGAAGAATATGAAAACTTCACATAATAAGTCAACGTTGTACTTTTGATTTTCTATAAACTTCAATGTAACATAGAAATAAATTGCACAATTTTGTTTTGTCCTTATTGTTAGTATTTGAAATCCTAAGTGGTATGTCTATTT</gDNA_template>
            <first_frame> G  *  K  Q  F  F  L  *  R  L  L  L  F  L  V  L  R  G  N  F  N  *  L  I  R  F  D  F  M  F  S  L  *  I  I  Y  G  Q  K  S  I  N  I  E  L  K  I  L  S  Q  F  S  R  Y  T  W  *  S  Q  L  P  Y  S  I  *  L  S  Y  F  D  I  I  L  Y  M  I  K  P  I  N  V  K  L  *  I  L  *  N  C  V  V  F  F  H  V  V  I  E  K  L  A  N  *  K  K  *  S  R  S  N  V  G  G  T  I  Y  V  D  S  F  L  K  F  A  Y  C  F  E  I  Y  I  V  N  S  I  S  L  S  D  *  T  F  I  F  S  L  Q  F  Y  P  I  Y  N  Q  K  S  I  N  E  K  L  L  S  Q  *  K  I  I  I  A  V  C  S  F  F  R  I  D  I  K  K  I  S  R  L  K  K  T  R  L  N  R  I  S  F  K  *  N  Y  F  F  *  I  Y  V  L  N  Q  F  S  H  S  I  *  L  L  F  F  S  Y  I  Y  S  Q  K  S  I  Y  V  T  L  P  M  I  S  Q  C  L  I  F  F  R  L  D  K  Q  I  E  K  N  L  H  R  S  D  I  R  G  T  D  K  L  D  F  A  I  V  L  K  N  M  K  T  S  H  N  K  S  T  L  Y  F  *  F  S  I  N  F  N  V  T  *  K  *  I  A  Q  F  C  F  V  L  I  V  S  I  *  N  P  K  W  Y  V  Y   </first_frame>
            <second_frame>  G  R  S  N  F  F  C  E  G  C  Y  C  F  *  F  Y  V  V  I  S  I  S  L  F  D  L  T  L  C  F  P  Y  R  L  Y  M  V  K  N  R  *  I  *  N  *  K  S  Y  L  S  F  R  D  I  R  G  K  V  N  Y  L  I  R  F  D  F  H  I  L  I  L  S  Y  I  *  S  N  L  *  M  *  N  Y  R  S  Y  K  I  V  *  C  F  F  T  *  L  *  K  N  *  Q  I  E  K  N  S  L  D  Q  T  S  G  A  R  F  M  S  I  H  F  *  N  L  L  I  V  L  K  Y  T  L  *  T  Q  F  P  Y  P  I  E  L  L  F  F  P  Y  N  F  T  L  Y  I  I  K  N  L  *  M  K  N  Y  Y  H  N  E  K  L  L  S  Q  C  V  V  F  F  A  L  I  S  K  K  *  V  D  *  K  K  P  A  S  I  G  Y  L  L  N  E  I  I  F  S  R  Y  T  C  *  I  N  F  L  I  R  F  D  F  Y  F  F  L  I  F  I  V  K  N  Q  Y  M  *  H  Y  Q  *  Y  L  S  V  *  Y  F  F  A  *  I  S  R  L  K  K  I  C  I  D  R  T  S  E  A  R  I  N  W  T  L  Q  L  F  *  R  I  *  K  L  H  I  I  S  Q  R  C  T  F  D  F  L  *  T  S  M  *  H  R  N  K  L  H  N  F  V  L  S  L  L  L  V  F  E  I  L  S  G  M  S  I  </second_frame>
            <third_frame>   V  E  A  I  F  F  V  K  V  A  I  V  F  S  F  T  W  *  F  Q  L  A  Y  S  I  *  L  Y  V  F  L  I  D  Y  I  W  S  K  I  D  K  Y  R  T  K  N  P  I  S  V  F  E  I  Y  V  V  K  S  I  T  L  F  D  L  T  F  I  F  *  Y  Y  P  I  Y  D  Q  T  Y  K  C  K  T  I  D  P  I  K  L  C  S  V  F  S  R  S  Y  R  K  I  S  K  L  K  K  I  V  S  I  K  R  R  G  H  D  L  C  R  F  I  F  K  I  C  L  L  F  *  N  I  H  C  K  L  N  F  L  I  R  L  N  F  Y  F  F  L  T  I  L  P  Y  I  *  S  K  I  Y  K  *  K  I  I  I  T  M  K  N  Y  Y  R  S  V  *  F  F  S  H  *  Y  Q  K  N  K  S  I  E  K  N  P  P  Q  S  D  I  F  *  M  K  L  F  F  L  D  I  R  V  K  S  I  F  S  F  D  L  T  F  I  F  F  L  Y  L  *  S  K  I  N  I  C  N  T  T  N  D  I  S  V  F  D  I  F  S  L  R  *  A  D  *  K  K  F  A  S  I  G  H  Q  R  H  G  *  I  G  L  C  N  C  F  E  E  Y  E  N  F  T  *  *  V  N  V  V  L  L  I  F  Y  K  L  Q  C  N  I  E  I  N  C  T  I  L  F  C  P  Y  C  *  Y  L  K  S  *  V  V  C  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0222K11.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41921" stop="41715"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLFFSYIYSQKSIYVTLPMISQCLIFFRLDKQIEKNLHRSDIRGTDKLDFAIVLKNMKTSHNKSTLYF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="51431" PGL_stop="51637"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51431" e_stop="51637"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="51431" e_stop="51637" e_length="207"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51431" stop="51637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283948" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAACTATTTTGAGAGCAAAGTGAGGTATTCCATAGACTATATAAGAAAATAGTCTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTGTTGTATTCGTGACTACACAGTGTAAAATTCCTTACTATAATAATATCAATTGCTCCTCT</gDNA_template>
            <first_frame> R  N  Y  F  E  S  K  V  R  Y  S  I  D  Y  I  R  K  *  S  V  K  K  N  R  V  *  A  I  F  *  *  D  G  N  Q  K  S  V  V  P  F  E  C  V  V  V  T  L  S  V  V  F  V  T  T  Q  C  K  I  P  Y  Y  N  N  I  N  C  S  S </first_frame>
            <second_frame>  E  T  I  L  R  A  K  *  G  I  P  *  T  I  *  E  N  S  L  *  R  K  I  E  C  E  R  Y  F  S  K  T  E  T  K  R  V  L  F  L  L  S  V  *  *  S  L  *  V  L  Y  S  *  L  H  S  V  K  F  L  T  I  I  I  S  I  A  P   </second_frame>
            <third_frame>   K  L  F  *  E  Q  S  E  V  F  H  R  L  Y  K  K  I  V  C  E  E  K  *  S  V  S  D  I  L  V  R  R  K  P  K  E  C  C  S  F  *  V  C  S  S  H  F  E  C  C  I  R  D  Y  T  V  *  N  S  L  L  *  *  Y  Q  L  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0222K11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="52819" PGL_stop="57268"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56136" e_stop="56484"/>
            <exon e_start="56928" e_stop="56970"/>
            <exon e_start="57246" e_stop="57268"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.985" e_score="0.903"/>
          <exon-intron don_prob="1.000" acc_prob="0.578" e_score="0.465"/>
          <exon-only e_score="0.522"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="56136" e_stop="56484" e_length="349"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="56485" i_stop="56927" i_length="443"/>
          </intron>
          <exon e_serial="2" e_score="0.465">
            <gDNA_exon_boundary e_start="56928" e_stop="56970" e_length="43"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.578">
            <gDNA_intron_boundary i_start="56971" i_stop="57245" i_length="275"/>
          </intron>
          <exon e_serial="3" e_score="0.522">
            <gDNA_exon_boundary e_start="57246" e_stop="57268" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56136" stop="56484"/>
              <exon start="56928" stop="56970"/>
              <exon start="57246" stop="57268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539305" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56137" stop="56343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283948" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAACCATTTTGAGAGCAAAGTGAGGTATTCCATAGACTATATAAGAAAATAGTCTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGAAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTGTTGTATTCGTGACTACACAGTGTAAAATTTCTTACTATAATAATATCAATTGCTCCTCTTGGCCCGTGGTTTTTTCCCTTATTCAGAAGGGTTTCCACGTAAAATTCTTGGTGTCGTAATTTTCCCATTTTATTTCCATTACTTTTACCATATATACTTTTGTGCTTGTCCGCGTTTTCCCAACATTGAGAATTATTCAG : GTTTTGAGGCTCTTCACCGCTTGCATCAATGAAGAGGAAGATG : GAAGGGAAAAAGGTCCAAACCCA</gDNA_template>
            <first_frame> E  K  P  F  *  E  Q  S  E  V  F  H  R  L  Y  K  K  I  V  C  E  E  K  *  S  V  S  D  I  L  V  R  R  K  P  K  E  C  C  S  F  *  V  C  S  S  H  F  E  C  C  I  R  D  Y  T  V  *  N  F  L  L  *  *  Y  Q  L  L  L  L  A  R  G  F  F  P  Y  S  E  G  F  P  R  K  I  L  G  V  V  I  F  P  F  Y  F  H  Y  F  Y  H  I  Y  F  C  A  C  P  R  F  P  N  I  E  N  Y  S   : G  F  E  A  L  H  R  L  H  Q  *  R  G  R  W :   K  G  K  R  S  K  P  </first_frame>
            <second_frame>  K  N  H  F  E  S  K  V  R  Y  S  I  D  Y  I  R  K  *  S  V  K  K  N  R  V  *  A  I  F  *  *  D  E  N  Q  K  S  V  V  P  F  E  C  V  V  V  T  L  S  V  V  F  V  T  T  Q  C  K  I  S  Y  Y  N  N  I  N  C  S  S  W  P  V  V  F  S  L  I  Q  K  G  F  H  V  K  F  L  V  S  *  F  S  H  F  I  S  I  T  F  T  I  Y  T  F  V  L  V  R  V  F  P  T  L  R  I  I  Q  :  V  L  R  L  F  T  A  C  I  N  E  E  E  D   : G  R  E  K  G  P  N  P </second_frame>
            <third_frame>   K  T  I  L  R  A  K  *  G  I  P  *  T  I  *  E  N  S  L  *  R  K  I  E  C  E  R  Y  F  S  K  T  K  T  K  R  V  L  F  L  L  S  V  *  *  S  L  *  V  L  Y  S  *  L  H  S  V  K  F  L  T  I  I  I  S  I  A  P  L  G  P  W  F  F  P  L  F  R  R  V  S  T  *  N  S  W  C  R  N  F  P  I  L  F  P  L  L  L  P  Y  I  L  L  C  L  S  A  F  S  Q  H  *  E  L  F  R :   F  *  G  S  S  P  L  A  S  M  K  R  K  M  :  E  G  K  K  V  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0222K11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="56136" e_stop="56484"/>
            <exon e_start="56976" e_stop="56993"/>
            <exon e_start="57179" e_stop="57218"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.903"/>
          <exon-intron don_prob="0.976" acc_prob="0.000" e_score="0.611"/>
          <exon-only e_score="0.550"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="56136" e_stop="56484" e_length="349"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="56485" i_stop="56975" i_length="491"/>
          </intron>
          <exon e_serial="2" e_score="0.611">
            <gDNA_exon_boundary e_start="56976" e_stop="56993" e_length="18"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.000">
            <gDNA_intron_boundary i_start="56994" i_stop="57178" i_length="185"/>
          </intron>
          <exon e_serial="3" e_score="0.550">
            <gDNA_exon_boundary e_start="57179" e_stop="57218" e_length="40"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56136" stop="56484"/>
              <exon start="56976" stop="56993"/>
              <exon start="57179" stop="57218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539303" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56137" stop="56343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283948" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAACCATTTTGAGAGCAAAGTGAGGTATTCCATAGACTATATAAGAAAATAGTCTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGAAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTGTTGTATTCGTGACTACACAGTGTAAAATTTCTTACTATAATAATATCAATTGCTCCTCTTGGCCCGTGGTTTTTTCCCTTATTCAGAAGGGTTTCCACGTAAAATTCTTGGTGTCGTAATTTTCCCATTTTATTTCCATTACTTTTACCATATATACTTTTGTGCTTGTCCGCGTTTTCCCAACATTGAGAATTATTCAG : TTAGTTCTCAATTTCTCT : TAATTTTATCCAAAAAAAAAAAAAGGATAGAAGACCCAAA</gDNA_template>
            <first_frame> E  K  P  F  *  E  Q  S  E  V  F  H  R  L  Y  K  K  I  V  C  E  E  K  *  S  V  S  D  I  L  V  R  R  K  P  K  E  C  C  S  F  *  V  C  S  S  H  F  E  C  C  I  R  D  Y  T  V  *  N  F  L  L  *  *  Y  Q  L  L  L  L  A  R  G  F  F  P  Y  S  E  G  F  P  R  K  I  L  G  V  V  I  F  P  F  Y  F  H  Y  F  Y  H  I  Y  F  C  A  C  P  R  F  P  N  I  E  N  Y  S   : V  S  S  Q  F  L   : L  I  L  S  K  K  K  K  R  I  E  D  P   </first_frame>
            <second_frame>  K  N  H  F  E  S  K  V  R  Y  S  I  D  Y  I  R  K  *  S  V  K  K  N  R  V  *  A  I  F  *  *  D  E  N  Q  K  S  V  V  P  F  E  C  V  V  V  T  L  S  V  V  F  V  T  T  Q  C  K  I  S  Y  Y  N  N  I  N  C  S  S  W  P  V  V  F  S  L  I  Q  K  G  F  H  V  K  F  L  V  S  *  F  S  H  F  I  S  I  T  F  T  I  Y  T  F  V  L  V  R  V  F  P  T  L  R  I  I  Q  :  L  V  L  N  F  S  :  *  F  Y  P  K  K  K  K  G  *  K  T  Q  </second_frame>
            <third_frame>   K  T  I  L  R  A  K  *  G  I  P  *  T  I  *  E  N  S  L  *  R  K  I  E  C  E  R  Y  F  S  K  T  K  T  K  R  V  L  F  L  L  S  V  *  *  S  L  *  V  L  Y  S  *  L  H  S  V  K  F  L  T  I  I  I  S  I  A  P  L  G  P  W  F  F  P  L  F  R  R  V  S  T  *  N  S  W  C  R  N  F  P  I  L  F  P  L  L  L  P  Y  I  L  L  C  L  S  A  F  S  Q  H  *  E  L  F  S :   *  F  S  I  S  L :   N  F  I  Q  K  K  K  K  D  R  R  P  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0222K11.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56328" stop="56484"/>
                    <exon start="56976" stop="56993"/>
                    <exon start="57179" stop="57216"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YQLLLLARGFFPYSEGFPRKILGVVIFPFYFHYFYHIYFCACPRFPNIENYSVSSQFLLILSKKKKRIEDP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="52819" e_stop="53141"/>
            <exon e_start="56336" e_stop="56468"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.966"/>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="52819" e_stop="53141" e_length="323"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="53142" i_stop="56335" i_length="3194"/>
          </intron>
          <exon e_serial="2" e_score="0.910">
            <gDNA_exon_boundary e_start="56336" e_stop="56468" e_length="133"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52819" stop="53141"/>
              <exon start="56336" stop="56468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284128" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTTTGGAACCTTGAGTATGGGTAATGAGACTGTTTCTAGGGTGGTTGGTATTGGTACAATTTGTTTGGAAACTAGTGTTGGAACTAAACTAGTTTTGAACAATGTGAAACATGCTCCTGATGTTCGTCTGCACCTAATTTCTGTTGGTGTTTTAGATGATGAAGGATATGTTAGTACCAACGGTGATGGAAAATGGAAGCTCATTAAGGGTTCCTTGGTTGTGGCTCGTGGTAACAAACAGCGTGATCTATACTGGACTACGGCCTCTGCTTGTGTTGATATGGTGAATGCGGTTGAGAGCGATAGCTCTTCAACATTATG : GCTCCTCTTGGCCCGTGGTTTTTTCCCTTATTCAGAAGGGTTTCCACGTAAAATTCTTGGTGTCGTAATTTTCCCATTTTATTTCCATTACTTTTACCATATATACTTTTGTGCTTGTCCGCGTTTTCCCAAC</gDNA_template>
            <first_frame> D  F  G  T  L  S  M  G  N  E  T  V  S  R  V  V  G  I  G  T  I  C  L  E  T  S  V  G  T  K  L  V  L  N  N  V  K  H  A  P  D  V  R  L  H  L  I  S  V  G  V  L  D  D  E  G  Y  V  S  T  N  G  D  G  K  W  K  L  I  K  G  S  L  V  V  A  R  G  N  K  Q  R  D  L  Y  W  T  T  A  S  A  C  V  D  M  V  N  A  V  E  S  D  S  S  S  T  L  W :   L  L  L  A  R  G  F  F  P  Y  S  E  G  F  P  R  K  I  L  G  V  V  I  F  P  F  Y  F  H  Y  F  Y  H  I  Y  F  C  A  C  P  R  F  P  N </first_frame>
            <second_frame>  I  L  E  P  *  V  W  V  M  R  L  F  L  G  W  L  V  L  V  Q  F  V  W  K  L  V  L  E  L  N  *  F  *  T  M  *  N  M  L  L  M  F  V  C  T  *  F  L  L  V  F  *  M  M  K  D  M  L  V  P  T  V  M  E  N  G  S  S  L  R  V  P  W  L  W  L  V  V  T  N  S  V  I  Y  T  G  L  R  P  L  L  V  L  I  W  *  M  R  L  R  A  I  A  L  Q  H  Y   : G  S  S  W  P  V  V  F  S  L  I  Q  K  G  F  H  V  K  F  L  V  S  *  F  S  H  F  I  S  I  T  F  T  I  Y  T  F  V  L  V  R  V  F  P   </second_frame>
            <third_frame>   F  W  N  L  E  Y  G  *  *  D  C  F  *  G  G  W  Y  W  Y  N  L  F  G  N  *  C  W  N  *  T  S  F  E  Q  C  E  T  C  S  *  C  S  S  A  P  N  F  C  W  C  F  R  *  *  R  I  C  *  Y  Q  R  *  W  K  M  E  A  H  *  G  F  L  G  C  G  S  W  *  Q  T  A  *  S  I  L  D  Y  G  L  C  L  C  *  Y  G  E  C  G  *  E  R  *  L  F  N  I  M  :  A  P  L  G  P  W  F  F  P  L  F  R  R  V  S  T  *  N  S  W  C  R  N  F  P  I  L  F  P  L  L  L  P  Y  I  L  L  C  L  S  A  F  S  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0222K11.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52819" stop="53141"/>
                    <exon start="56336" stop="56468"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFGTLSMGNETVSRVVGIGTICLETSVGTKLVLNNVKHAPDVRLHLISVGVLDDEGYVSTNGDGKWKLIKGSLVVARGNKQRDLYWTTASACVDMVNAVESDSSSTLWLLLARGFFPYSEGFPRKILGVVIFPFYFHYFYHIYFCACPRFPN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="59791" PGL_stop="58984"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59791" e_stop="58984"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="59791" e_stop="58984" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59791" stop="58984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAATCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCTGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTAATGTATGCTATGGTCTGTACAAGGCCAGATTTAGAACATGCAGTCAGTGTAGTGAGCAGATTCATAGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  N  L  Q  G  S  G  I  K  G  L  T  A  I  W  *  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  L  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  N  M  Q  S  V  *  *  A  D  S  *  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  I  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  C  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  N  V  C  Y  G  L  Y  K  A  R  F  R  T  C  S  Q  C  S  E  Q  I  H  R  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  E  H  A  V  S  V  V  S  R  F  I  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0222K11.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59789" stop="58986"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLEHAVSVVSRFIGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="60450" PGL_stop="59802"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60450" e_stop="59802"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="60450" e_stop="59802" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60450" stop="59802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60449" stop="60065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAATGAGAGAGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTAAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  *  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  R  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  R  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  K  P  S  T  Y  K  E  A  I  L  S  S  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  M  R  E  I  *  R  N  L  K  R  R  I  K  S  H  R  Q  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0222K11.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60449" stop="59802"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNERDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSKPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 395 chains have been computed
$ 
$ memory statistics:
$ 87912 bytes spliced alignments in total
$ 13 spliced alignments have been stored
$ 6762 bytes was the average size of a spliced alignment
$ 11744 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 1957 bytes was the average size of a predicted gene location
$ 5 megabytes was the average size of the backtrace matrix
$ 528 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-26 22:58:31
-->
