<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-11-08 20:36:22"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0227C07-I7LB9/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/nudTlEdkFl" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/nudTlEdkFl" ref_id="SGN-U345835" ref_strand="+" ref_description="SGN-U345835        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | choline transporter-related, contains weak similarity to CD92 protein (Homo sapiens) gi:16945323:emb:CAC82175 | chr3:5193235-5196596 FORWARD | Aliases: MJK13.4(evalue: 2e-98, score=353) genbank/nr: gi|18400752|ref|NP_566511.1| expressed protein [Arabidopsis thaliana] gi|15028189|gb|AAK76591.1| unknown protein [Arabidopsis thaliana] gi|25055020|gb|AAN71973.1| unknown protein [Arabidopsis thaliana](evalue: 2e-96, score=353)">
      <seq>cattgttgaggatatcgcagttgataagtctatccatggcttaattaactctcgatctttggtcttaaagagatatgtagctgatgttggcaagtcatggggagtgttgattgtttgtggaggaattttgccagtttttctatcagtgatatggcttctgatgattcgtcactttgtggctgcaatgccttggataactgtcgtcctctttaatggcctcatagtttcagtcacaatgttctactatctaaaagctggatggatagggaacgaccctatctcccccatcattggtgaacatgatccgtattatcatgtatctgcaagggaaataagtcatctacatgctgctgctgttatcatgactgctgtaatgattatttcggtcttgtcatccatcgctatagtgcgtcgtatacttatggctacttcagtcctgaaggtagctgctaaggtcattggagaagtacaagcattaataattttccccatcattccgtatgctatcctagcaatcttctacatgttttggttttcagctgctcttcatcttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0227C07-I7LB9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0227C07.1" temp_strand="+" temp_description="C07HBa0227C07.1  AC232630.1 htgs_phase:2 submitted_to_sgn_as:gi|205277506|gb|AC232630.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0227C07, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="3671" stop="6033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3971" g_stop="4040" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4041" i_stop="4464" i_length="424">
            <donor d_prob="0.667" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4465" g_stop="4648" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="254" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4649" i_stop="5271" i_length="623">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5272" g_stop="5345" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="328" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5346" i_stop="5425" i_length="80">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5426" g_stop="5539" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="442" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5540" i_stop="5618" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5619" g_stop="5733" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="557" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0227C07.1" gen_strand="+" ref_id="SGN-U345835" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0227C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3971" e_stop="4040"/>
          <exon e_start="4465" e_stop="4648"/>
          <exon e_start="5272" e_stop="5345"/>
          <exon e_start="5426" e_stop="5539"/>
          <exon e_start="5619" e_stop="5733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGTTGAGGATATCGCAGTTGATAAGTCTATCCATGGCTTAATTAACTCTCGATCTTTGGTCTTAAAGGTTGAGTGACTTAACACTTCTCTTGTTTTGCTTGTAAAGTACGCAGATAGAATCTTTTCATCGGAACTTGCCGGGAGAAAATGAGACACTCAATAGTATAGTGTAGATTGCTCGTTTGATTGGCTGTAGATGACATTTTCTCTTGGACCTGCATCAGGATACATAACCACGTGTAAAAAAAATTGCTTTTCATACCCACAAATTCTGCGAAATCTTTAGTTCAAACGGTACAAGTGTAACTCATTTTCATAAATAACAAATGTTTCATTTGACTTGTGTGTCAATGGTCTAACGATGACTAAAACAAGAGAACACTGAAATGCTCAAGTAACACATATTATAACAATGTGCCTTGATTGTGTTCTCTATGGTATCACATTCTTTATTTAAGAGTTCAAAATTCACATTTGAGTTACATTTTCAGAGATATGTAGCTGATGTTGGCAAGTCATGGGGAGTGTTGATTGTTTGTGGAGGAATTTTGCCAGTTTTTCTATCAGTGATATGGCTTCTGATGATTCGTCACTTTGTGGCTGCAATGCCTTGGATAACTGTCGTCCTCTTTAATGGCCTCATAGTTTCAGTCACAATGTTCTACTATCTAAAAGGTAGGCACTGTTCCCTAGTGTTTTCCCTCTGTCGTTACGTAGTAATTGTAATTCATGTCAATTTTCAGTTCTATGTCCAAGTTGTGATTGAGATGTAGTACCCTCTGACAAACTTTATACTTTCTATTATTTGTTCTATGTCCAAAAGTCTCATAGCACTATTAGTACTTGTGATTCTGGATTTTTTTAATCTTCACACCCCCTTCCCTGGGTTTAAAGAAAACTACACGACTTCTGTACTAAGATGATTCATGGGAAACATATCTTCTTTCCTTTTATTTCCATTTTCCATTCTCCTTGGAGTTAGTCGAGGTGCGCAAAAGCTAGCCCAAACACCACATTTATCAAACAAAAATTAGTAAAAAGGCCGACAAGATGCCTATTGTTTAATGTATGCTGCACTCTTTTGCGCCCATTCACCAAGATAGATACTTTTCCTGATGTAATCCTTTCTTTCTTTTTGATAAGTTCAAGTCTTTCTGTCTTATGCAAAGATCTTTTTTTTTTCTACAGTTCGTGAAGATCTCACGTAGTCCTGCATTATATCTTATGTTTGTTGTGTAATTGAACATCATATATTTCCATTGAGTATACTAACAAAATTATTCTTCTTTCCTGTCCAGCTGGATGGATAGGGAACGACCCTATCTCCCCCATCATTGGTGAACATGATCCGTATTATCATGTATCTGCAAGGGTATGCTTGCCTTTTGTCAGTTTCATCATCCTCTATGTAATAGTTTGCTGTACCGTTAAATTAGATTATCTGCTTGGTAGGAAATAAGTCATCTCCATGCTGCTGCTGTTATCATGACTGCTGTAATGATTATTTCGGTCTTGTCATCCATCGCTATAGTGCGTCGTATACTTATGGCTACTTCAGTCCTGAAGGTAAGTCTATCATAAAGCTTCTTATCTCTAGATATATTTACTTAAAACCTGAGATTATGAATGATAATCTTAATTGCAGGTAGCTGCTAAGGTCATTGGAGAAGTACAAGCATTAATAATTTTCCCCATCATTCCGTATGCTATCCTAGCAATCTTCTACATGTTTTGGTTTTCAGCTGCTCTTCATCTTTTTA</genome_strand>
        <mrna_strand>CATTGTTGAGGATATCGCAGTTGATAAGTCTATCCATGGCTTAATTAACTCTCGATCTTTGGTCTTAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGATATGTAGCTGATGTTGGCAAGTCATGGGGAGTGTTGATTGTTTGTGGAGGAATTTTGCCAGTTTTTCTATCAGTGATATGGCTTCTGATGATTCGTCACTTTGTGGCTGCAATGCCTTGGATAACTGTCGTCCTCTTTAATGGCCTCATAGTTTCAGTCACAATGTTCTACTATCTAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGATGGATAGGGAACGACCCTATCTCCCCCATCATTGGTGAACATGATCCGTATTATCATGTATCTGCAAGG................................................................................GAAATAAGTCATCTACATGCTGCTGCTGTTATCATGACTGCTGTAATGATTATTTCGGTCTTGTCATCCATCGCTATAGTGCGTCGTATACTTATGGCTACTTCAGTCCTGAAG...............................................................................GTAGCTGCTAAGGTCATTGGAGAAGTACAAGCATTAATAATTTTCCCCATCATTCCGTATGCTATCCTAGCAATCTTCTACATGTTTTGGTTTTCAGCTGCTCTTCATCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/nudTlEdkFl" ref_id="SGN-U320110" ref_strand="+" ref_description="SGN-U320110        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: AT3G15390.1 | Symbol: None | expressed protein, low similarity to PRLI-interacting factor N (Arabidopsis thaliana) GI:11139276 | chr3:5196696-5199538 REVERSE | Aliases: MJK13.5 (evalue: 2e-74, score=277) genbank/nr: gi|15795104|dbj|BAB02368.1| gene_id:MJK13.5~unknown protein [Arabidopsis thaliana](evalue: 2e-73, score=280)">
      <seq>ggtctctctcctcactctttcttcttttctccttccttcatagttccttccttccttctccgaaaagctagcggttgagtctgaagagtgaacaatatattgttcgaatggagagagccgataaaaaacttcattaaagctacttcgtttggctctcattctctatctatcatcggccggcaagtttatacacggttcttatttcatcttatactgcaaggatgaagatggaggcacctccttcgacaatcttgtttactgatgatgatagcaagaacctggagcaattgcttgatgtctttggatctgttgtctctctcgatgacatcgctgcagcttattgtaaagcaggtcgggatccaattattgcaggtgatatacttggagatcagaaacctagcagctccggaactactaactctgagatggaagaaaacatagaggattccgtgactctgacttctgaatttgaggaagtaggggactctatgatatcgacatctgcatctgtatctgagattgatgccaagagagttggtcccaggtcatcaaagcaaaaaaagttatcagtgtctatggggactgtctcaagcatgatcccaaaagactatctgacgaataggccactaattacagaaacttctacgagaatcaagccactgaaattaagcgcagatgatttcttaaccccagagctaagggaggagaaagctccattaggtgctgcagctatgagtgaaaccctgcccagcagtgtagaggagttcctcttcaacatgctgggaagcggattttctcttgacaggagtgtaattggagatgttgttggtcaatgcagctacgatctgaacaagagtatggataagctgctagatatgtccgcatcaactttgggaaagagcgatgatattataaatataggtgtcaagaaatctgtggagagttcagattttgcatcagttgtatcaaaagagacatcttcaatgacagatccagccatccgttccaaagcaaatgagaagactaaaaatgggctcaagttatctatgaaggagcaggaaaggtatgagattcaaaaggaagttctgcatgcattgtttgatgtacctgcagcttcaagatatgataatgtggatgaagtgattcgtccggtgaaggaagttgggaagtctagtagattaaatctcgttgtagataaaccattacaggagactttagaacgccagattcttatcaggacaccacaaagtgatgcaaaaaatggtgaggaggatgaagaaagctacgaagttcttcggaaagctgtaaaggagtactggattacaatgaaagagtactataatgcagcttctgaagcattctccaaaggagatcatgatcaagcacgcaaattcctggaagagggacaatttttcatgacgaaggcgcaagtgacggatgaaaaatcctctcaaaagcttcttgaaaccagttgcagttccagcaaagaaattgtgacactcgaccttcacgatttggagccaaaggatgcagtgcgcttactcaaacttcagttgacttctctttgtggattctcgtctattcaatatctcaaaatcttagttgggatcactgctgaagaagctaaaggtccccggaagcgtctggtactgaaatttttggagagggattccataccatggacggaggaagaaaatggcacagtgcttgtgataagagtggatgtgatagatccgcggaaaatgacttttgctaaaaaatcaactgccagagtccgataaatacatcactgaatagatcattgttctaaagcatgaattttgtatcaacttggatcttgtgaaatgctttgatgcttctgcattttttataaccacaaggaacaaccttggccttgctaccaaaaagacttgtatttgattctttaatttctcttcttaattctcaagccggtgagcaagttttgcttaggcaccgatttacttggtaaagactaatagcaaattgatttcagaagtacattatatgaaacatgcaatgctttgacttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0227C07-I7LB9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0227C07.1" temp_strand="-" temp_description="C07HBa0227C07.1  AC232630.1 htgs_phase:2 submitted_to_sgn_as:gi|205277506|gb|AC232630.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0227C07, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="17801" stop="7757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17502" g_stop="17311" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17310" i_stop="16299" i_length="1012">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16298" g_stop="15663" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="828" r_length="636" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15662" i_stop="15272" i_length="391">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15271" g_stop="15246" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="829" r_stop="854" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15245" i_stop="14409" i_length="837">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14408" g_stop="14331" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="855" r_stop="932" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14330" i_stop="12706" i_length="1625">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12705" g_stop="12635" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="933" r_stop="1003" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12634" i_stop="12505" i_length="130">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12504" g_stop="12248" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1004" r_stop="1260" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12247" i_stop="11588" i_length="660">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="11587" g_stop="11502" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1261" r_stop="1346" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="11501" i_stop="11366" i_length="136">
            <donor d_prob="0.706" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="11365" g_stop="11309" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1347" r_stop="1403" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="11308" i_stop="10767" i_length="542">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="10766" g_stop="10699" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1404" r_stop="1471" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="10698" i_stop="10607" i_length="92">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="10606" g_stop="10500" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1472" r_stop="1578" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="10499" i_stop="10425" i_length="75">
            <donor d_prob="0.616" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="10424" g_stop="10357" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1579" r_stop="1646" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="10356" i_stop="8461" i_length="1896">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="8460" g_stop="8057" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1647" r_stop="2050" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2051" polyA_stop="2062"/>
      <MATCH_line gen_id="C07HBa0227C07.1" gen_strand="-" ref_id="SGN-U320110" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2050</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0227C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17502" e_stop="17311"/>
          <exon e_start="16298" e_stop="15663"/>
          <exon e_start="15271" e_stop="15246"/>
          <exon e_start="14408" e_stop="14331"/>
          <exon e_start="12705" e_stop="12635"/>
          <exon e_start="12504" e_stop="12248"/>
          <exon e_start="11587" e_stop="11502"/>
          <exon e_start="11365" e_stop="11309"/>
          <exon e_start="10766" e_stop="10699"/>
          <exon e_start="10606" e_stop="10500"/>
          <exon e_start="10424" e_stop="10357"/>
          <exon e_start="8460" e_stop="8057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTCTCTCCTCACTCTTTCTTCTTTTCTCCTTCCTTCATAGTTCCTTCCTTCCTTCTCCGAAAAGCTAGCGGTTGAGTCTGAAGAGTGAACAATATATTGTTCGAATGGAGAGAGCCGATAAAAAACTTCATTAAAGCTACTTCGTTTGGCTCTCATTCTCTATCTATCATCGGCCGGCAAGTTTATACAGTAAGATTTCGTTTCTCTTTTCTGTTCAATGATCAATCACACTGTTTATTGTTTCGTTGGCTGAAAAATTTGGTTCGGTTTCTATCATTGAATGATCTCCAGAAGTGATTTTGTAATTCGTATGAACCGAATTGGATTTTGCATTGTTTAGCATTTGTAGAAGTATGAATTATTATTAGTTTTTGGATTGGTTGCTTTTTGATGTTTAAATTTCAAGCTGAGAATGTTCATCTGGATGTTATATTCGTTGATTGATTTTGTTTTGTGTGAGTGCATTGTTGTGTTAGTTGTAATTTTTGGTGTGGAAAGTGATGGAATGAAATGCCTGATTTTAATTTGTGACCTAGACGTTTAGTATTGTTTCATTTCATGAATATTGTTTAGGAGTTCGGCTCTTAAATCACAGTGATTTTCTTCTCTTTTTTTTTCGTTCATTGGAATAGACTGAGTTATAGTGTGTCAGCATCTTTTCAGGGGTGATAGTTGTATGCTTAATGTAATCTTCATTGATTTGAGGAAGAATATCAAATTTTGTTAATGTGCTTTCATGCTGCATCTGAATAGTTCTAAACTTTGGCATTACTAACGAGATTCGTTTGGCCGTGGATGATTAGAGAAGTGGATTAGTTTGTTTCAGTTGTAAATCATTTGTTCAGACCAAAGGATTTTACTTACACACGTGTATGGCAGTGTAAATACTGTATAGACTAGTTCTTTGATCGCTTATGTTAGTTAGATCTAAACAACCAGTTAGTAGGAGTTCTCAATTTTACTTATCAAAAAGTAGTATTTCTCCATTTTTACTATTGTTATTAGTTGCTTTTCTCCTGTCACAACTGTTGGTTCTCTGTACATTCTGTTATCCGTGAAATGTTGGATTCTCTTGTTGTTATGCCATCCAATCTCTGCCATTTTCCTTTATTTTGCGGTTTCTGCTATTCTACAAATTGTTAAAAAGCCTTTGATTAATAAGTGATGTTCTCAATATGGTTGCTTCTTTACTTCTTATCAGCGGTTCTTATTTCATCTTATACTGCAAGGATGAAGATGGAGGCACCTCCTTCGACAATCTTGTTTACTGATGATGATAGCAAGAACCTGGAGCAATTGCTTGATGTCTTTGGATCTGTTGTCTCTCTCGATGACATCGCTGCAGCTTATTGTAAAGCAGGTCGGGATCCAATTATTGCAGGTGATATACTTGGAGATCAGAAACCTAGCAGCTCCGGAACTACTAACTCTGAGATGGAAGAAAACATAGAGGATTCCGTGACTCTGACTTCTGAATTTGAGGAAGTAGGGGACTCTATGATATCGACATCTGCATCTGTATCTGAGATTGATGCCAAGAGAGTTGGTCCCAGGTCATCAAAGCAAAAAAAGTTATCAGTGTCTATGGGGACTGTCTCAAGCATGATCCCAAAAGACTATCTGACGAATAGGCCACTAATTACAGAAACTTCTACGAGAATCAAGCCACTGAAATTAAGCGCAGATGATTTCTTAACCCCAGAGCTAAGGGAGGAGAAAGCTCCATTAGGTGCTGCAGCTATGAGTGAAACCCTGCCCAGCAGTGTAGAGGAGTTCCTCTTCAACATGCTGGGAAGCGGATTTTCTCTTGACAGGAGTGTAATTGGAGATGTTGTTGGTGAGCACTTTACCTATGTCTACACTTAGTGTTTGTAAGATTATTTGATAAGTAGTGCTGCCACATGGAGTAATTCTACTTATACTTCCAATGACCTGAACTTGTGTCATTTCTTTCTTCACTTCTTTTCATTGATCTTCTAATGAAACTTGCAAAAGTTGGTTAAATGTTTCTTTATAGTCTGTTTTGAGACTTGATTTGTTAAGTAGAATGCAACTTGAGGATGGTCCACTTGTTCAGTTTGTCTCAGATATCTTTAAATTCTGTTCCCTTTTTTCTTCCTTATAACTGCATTGTAATTCCTATGAGCTTATAACTGCATTCTAATTCCTAGGAGCTGTCACAACTTTTGGATAATCTCCTTCCTAATTTGGTATTGTTGGATATACAGGTCAATGCAGCTACGATCTGAACAAGGTTAGTGATATCAACTCAACCACTTTGTATACTTTATATGTGTTTTTCGAGGCATCAAATGCTAATATTATATTTGGCTCAATTTTATGTTTACATTCAGCATATGCATGTTTGCACTTAACTCTTATGCTGTTACTCCGTAATTGGCACCACATTGTTATATGCTAAGCACATATGTGAAAGTTGCTCTTCTAAGCACCTGCAAATACCATTTAACCTGCTTATTCTCCGCCCTCCTTTTATTATTACCTATGAAATCTTGAAAGTAAGTCCTCAAAACGCTTTTCTAGGTCCTTCTCAAAGTCAATCCCGTTGCTGGTTTGGTTTTTGTGGCTTAAGTTTAAGTAGTTTTGATGTATGTGGTTTGAAGTCCACATTTAACTAGAAAATAAATTATGCTCCATTCTACTTATCAGAATAGCTATTAAGCCTCTATCACAGTTAAAGTAATTACCTCATGTACCTAAATTTAGCTTGTGGATTTAGGAACCAATGAATGAATTTCTTGCTAACTGTGGTTAACTTTCATGGCGAGAAACCTCAATGCATGTGTGGGATCATACATAAATGCCAGGAGGATGAGGCCAGGTTGCAGAAGCTTAGTTCTCATACTAAGCAGAAAAGACAATGCTCGGTTATTGCTGTTTGATCTTCTGATTCCGAATATATCAGCCTGATAACAATTTTGTAGTTCCTGCTTGGGTGCTTCTATCTTTTCGTTTCAGAATTTTTGCATGCACACTAGACATAGATTGGCTTACTTCTCTACAGAGATTTATATATCGCTCTAATCTTGCATTTTCATTATATTACACCCCCTTTCCGCTGAATATGCAGAGTATGGATAAGCTGCTAGATATGTCCGCATCAACTTTGGGAAAGAGCGATGATATTATAAATATAGGTGTCAAGAAAGTAAGTTTTCTTGTATGTCACTTGGTGTTGCTCATGTCTGCTGTAAAACTAGATACATCACTTACAAGCGAACTGCTATTTAATGATAGTGATCTTAGTCAGGCAATCTGCTTCCTAGCCACGCTCTTGAAGGAAAATGAGACAGCTTTTTCACAATAAAATTCTAGGAAAGGATAGTGTCTTATCTTTCTCTTTATTCTCCTTTTCCTCTCCCTTAACCCATTCACTCCTCACCCAGTTTGTTCTCTCCACCATGCTCACTCTGTCACCTGACCTGAGAAAAGTCCTTATGACTGGAGTTACTACTGTACTAAGGATCAGTTTTGCTTTGAGAAAAGGGTTCCACATCTATACAATAGGTTGATATCTTGACAGAACAGCCAAAGACCAGATATGCAGTAGAATTTATTTTCAAAAATAGATTCAAGTTAAATAACCTACTGATGTGACTACAGACTACAAAAATGAGCAGTGTATTCCTTTTGGGAGGTAATTTTGTAAGGGATTCTATTCATAAAAAATAGGTTTCTATGAGGTAGCTTCTCTAGAACTGGAAACAGTTTTGGATCTGTAGTGATGCAGTCCGCTTGAACTACTTGACGTTGCATCTAGCTGTAAAAAGAGCTTACAAGATTAATAATGTTCAATTCATTCACCATATAAATATCCACATTCCTTTGAATTGTAGGAATTACTTTTGTATTTTGTTGGCTACTATACTGCTAAGTTAGGTCAGACCAGATTTCCCCGTCTCTGAAATCAAAGGGAATAGATAACCAACCACTCTTCTCCTATCCCTGATTACCTGAGGTGCTGCAGCATTAAGAATTTATTTTTAAAAGTAAGGATCACAAACTATCTTTCAGGCATTATATTTAGACAGCCTTTAAACTAGTCCAGATATTCTATTCAACCACTTAAACTCAACCTATGACCATTTGAACACCTTACCTGTACTAAAAGTGTCATTCAGCCCCAATTTATACAAAAAAAGCTGTGTAACTCACACACATATGATGTGGCAGAAAGACAAATAAAACCATGACATGTGCATATGGACTCAAATAATCATTAAAAGAAAGAAAAGCTTAGTTTCTATAACGCATTCCTGCCCACTCAATCCTCCATTTCCTCTTTCTTCCTCCTTGGAGATTTCCTTCGACCCCCCCATTGCTTTCCACCCATTTCTTTCTCATTTTTCTCTTTATTCCTTTTGCTTTCAAAAAAAATTCCGCCAGAAGTTTCTGCCCGACTCGAAAAGTATGAAGATTGGCTGAAATTTTTATGGATATTTGTCAGAAAAAAATTCTCTCTGGCCAACCTTTTCGTTCATCTATTTAATCTAATATTCTAGTTTAGCATTTGCATGATAAATTATGGACTAGAGTCATGAGAAAAATGATTGTTTATAGAACATGTGCGATATAGCTGAGGTTTATGATGGTTGAAAATGGTGGTCGGGTGGCAGACCACCTGAAAGAGAAGAAAGGGGGGTGGGGGGTGGACTATGTATTACACCTATCTTTAATGGTAATTCTATAGTAGTTCCATATGCAATTTAAATTGTTTAAATCACATAAAATAATTTCCTTACTTACTATGCTTTCTCTAATTTACTATAACAGTCTGTGGAGAGTTCAGATTTTGCATCAGTTGTATCAAAAGAGACATCTTCAATGACAGATCCAGCCATCCGGTACTCTGTCCTCCAGAAACTATAATTTAATGTCCAGGAAGTTCTCTTTTTTTTTTGGTTAAACTGATTTTGTAGATTTTCAAGGTGTTGTTATGGATTGACTGTCATCCTTCTATTTTTGCTGATGCAGTTCCAAAGCAAATGAGAAGACTAAAAATGGGCTCAAGTTATCTATGAAGGAGCAGGAAAGGTATGAGATTCAAAAGGAAGTTCTGCATGCATTGTTTGATGTACCTGCAGCTTCAAGATATGATAATGTGGATGAAGTGATTCGTCCGGTGAAGGAAGTTGGGAAGTCTAGTAGATTAAATCTCGTTGTAGATAAACCATTACAGGAGACTTTAGAACGCCAGATTCTTATCAGGACACCACAAAGTGATGCAAAAAGTAAGCAGCACTAACTGCTTATTACTTGTGTTGGACAGATGAAAAAGTGTTTATGGTACATTTGGCTTTTTCTAAAGGTTTCATATCTTCTTTTCAATTGCCTTTTTTTCTATGATTTTGTACTCTTTTATGGCAAGATTGCTTTTTCCAGTTGAATCTGCCGTTGGCAACCAGAAACTGGAGAACTTTTTTTTTTCTTTTTCTCTTCTTAGTCGTATAAGTTCTATATGTTGGAGCAAGTAAGAAATAGAAAAATGCTCCCCCTCTTTATGGTTCGTCTTTTACTTGAGGTACCTTGAGCTTTATTTTATGGAAGTGAAATTACCATTTAACTTAACTGGACCCATAAAGACATCCATTCGTATCGAACCATATGGATGTCGGCCTGGAACAAGTGCAAGTATATTCCTGTCTTAGGTATACACTTATCCCTTGGAAACAGAGACCTAAACCTCAAAGTACCCTATACATTCACAGAAAAGATATTAGAATATTATATGTACTGGTGAAAAGAACATACCCAGGTAAACCTCACTAGTGGGGTCTGGTAAGGGTAGGATGTATGCAAATGCATGGATATTTGTAGCTATCCAGTACTCCTTTAGGATAGCTATTTGCTTCATTTTCTCATGTAAAACACCTCTTGTTCTTCAATTTTAGATGGTGAGGAGGATGAAGAAAGCTACGAAGTTCTTCGGAAAGCTGTAAAGGAGTACTGGATTACAATGAAAGAGTACTATAATGCAGTGAGTCATGGATACCTCTCTTCTACAGTTTCATGATCTAAATACCATTAAGATGCTTCATTCTGTGTCGAGCGAGAAGAAGAAAGTTTAGTATGTTAAATCTTGACTGGTATTACAAACTTAAATTGTTACCCAGGCTTCTGAAGCATTCTCCAAAGGAGATCATGATCAAGCACGCAAATTCCTGGAAGAGGTAGGGTGTTTGTTCCTTTATGTAGAGTGTCTTGACTGTTTGTATTTGAAAATATAAGTGAAGAAATAACTAGCCTCCATAGTCTCTATGAGATATTCTACTGATTGGTGTCGGCTGAGTAGGTGGTGTAGAGTTACTATCTTAATTAGCTCCATTAGGTGGTCAGAGTCTGAGCATTTCGTCAACTTCCTTCAAAGTATCCAAATATTTTACTTGCTTCTTGCTTTACACCTATCAAGGGAGGTTTTAGCTTCAACTTAGCCTACAAACATCGTAAAAAGCAAAGTAACATGCCAGGTTCAAGTTCTTCATATTCATCGACAGCTTTCACTTCTAGCACAATGAAAGAGAAAATACTCATAACATCACCTGTCACGGGAAAAAGAAGAAAAATAGCTCCAAATTGATGCTGGGTATAAATGTCCAATTTGTGCAAACTGTTCTCTTCCCATAAAGTTGACCTTGCCTTGGCTGATCCACTTGTTTAAATTTTCATTATGGTGGTGTGCTGGCATTTTACTCATTATCTTCTCATGAAACAGGGACAATTTTTCATGACGAAGGCGCAAGTGACGGATGAAAAATCCTCTCAAAAGCTTCTTGAAACCAGGTTAGGCAGAAGTCTGGCTTCCTTTCTCTTTTCTTTCTCTACTCATGTATGTTGCTTACAGGGCTTGTATTTACCGAATACTCCAACCTTAGTTGCAGTTCCAGCAAAGAAATTGTGACACTCGACCTTCACGATTTGGAGCCAAAGGATGCAGTGCGCTTACTCAAACTTCAGTTGACTTCTCTTTGTGGATTCTCGTGTAGGTTATCGTCATTATAGGACTTCGTCAATTGTTTTTATATAAAAATGGCATTGATATTTTCCCTTCTATCAGCTATTCAATATCTCAAAATCTTAGTTGGGATCACTGCTGAAGAAGCTAAAGGTCCCCGGAAGCGTCTGGTATGACTTGTTTCTTCTCCTTTTCTTGGTGCTGATATGTTTGAATAATTTGGTCTATCTGCTGCTGTTTTTCTCACGGGTATATGTTACTGACAATTGGAATATTGTAATCTTCAATTTTTTGGGGCAACACTGTAAATATTACTATTGACAAACCAAGTCAGCATAGAATACAAGCCTAAGAGCACCTAGCCATTTCCTTCACCTCTTATGAAGGTAAAGATGATCATAGGCCTCAAAAACGAGTCTAATTACATGTATATTCTCTCTTTAAGCCCCCTAGATCTATCCAACTTCTTCTGCATATAAGGTAGATTTGATCTATCTATTAACTCCTTACTCTGTGTAATTGCCCTCTCTATATCTACAGTTTGTCCCTTGAACAGGTTCCAGTTCTGGGCCCTCCAAGTATAAATGACCATTGCCCCCCACACAGCAGCTACTATCTTCTTCTGGATTAACTTCTAATGCTTCCTTCTATTTCCTCCCTTACATTTTTAAACCAGTCACACTCAAATAACAGATGCTGAGATGTCTCCATATCAGCAGATCCACAAAGACAGCAGTGCAGGTCATCCACCTGAATGTTTAGCTGAAGAAGTCTCCTTTTCTGATAGCTAACAATAAACTTGTGTTTTGGTTGTGCAACATCGTTTCATCTCTGTTCTGCAGCATTTTCCTTTTTTTTCCTACAACATCATGTAGCTTCTAGAGATTGAGTACCTTCCTCCAGGTGTAAGATTATATCCCTGGGTAAACCAAGCCCAAACTGTGGAATCATCCTTCATTTCACCCTTAGTGAGCCCTTATCCACCACTAATTGCCATAACAGTTCCCTACTTATGCAAGATTCCAGATTCTGCTGCCCTTGATATTAAAGCCTTCATTACCCTTAGGTACGCAAACTGTATCCCAAGCTACAAGGCTCACTTTCCTCTTTTCTTCATTGCCCCCATAGGAACATTCTACATCTTCTATCAACCTTTTTCAACACACTCTGGGGCTGTATTAACACCATACCCCAGAAGTTATGAATGGAGAACAACACATCAACAATCACTTGTAATCTCCCAGCGTAGGACAATTGCTTAGAATACCCTGTACTAATTTTATCTGATATCTTATTAATCAGAGTGGCAGGATCTACAGAGTACTTTTGAAGAAAATGGTTGTTTTTTATTCTTCCTGCCTCTGCCATGTTATACACGTATGCCTCTGCCATTGTTCAGAAAATTTGGCCTCAAGTCTAAACAATTCAGTCCAGATTGGTAACTCAAGAAGATAATAGACCTTAAATCTGACATATGAGAACAATTAAGCTGTGTATGCCAGTTTATCTTTTCACCTCTTAAAATATGCAAGTGGAAATTCCATCTGCATCTTTCATAAATGTGAAAACCACAATGTTCTGACGTCGAAACACTGCTGAATGGACAGTATTAACTATACAGTCAAGTACCTTCTAGTACTCTACTATAGGTGTCAGTTTATGGTCCTTGTAACCAATTACAGTAGTATAAGTTACGAAAAATTAATGTGATATCCAAACTGTTTCTTTCTTCTAGGAAATAATATATAATCTATTTCAAAATGTACATATAAGAAACAATTGTGGTTTAGAGAATGTTTTAGTGTCGACTCTTCTCATTTTCATTATTTTGATCGCGAATATTATCTGTATAGGACTTTGGATAGGTTAGGGTTGAGACTTTCTCCCATGCTGTAGGATTAACAAAAAATTCATTATGAACTTATTCGATCTCTGTTGTTTCATATCCCAGATAGTATGTCCAATTGAATTATTTTTCTCCATTCTATGTCTATTACATCTCATTTCTTTAGCTACTTGAATCGACATTGGACAAATAGAAGTATGAGACAGATATTTGTAAACAGGTACTGAAATTTTTGGAGAGGGATTCCATACCATGGACGGAGGAAGAAAATGGCACAGTGCTTGTGATAAGAGTGGATGTGATAGATCCGCGGAAAATGACTTTTGCTAAAAAATCAACTGCCAGAGTCCGATAAATACATCACTGAATAGATCATTGTTCTAAAGCATGAATTTTGTATCAACTTGGATCTTGTGAAATGCTTTGATGCTTCTGCATTTTTTATAACCACAAGGAACAACCTTGGCCTTGCTACCAAAAAGACTTGTATTTGATTCTTTAATTTCTCTTCTTAATTCTCAAGCCGGTGAGCAAGTTTTGCTTAGGCACCGATTTACTTGGTAAAGACTAATAGCAAATTGATTTCAGAAGTACATTATATGAAACATGCAATGCTTTGACTTA</genome_strand>
        <mrna_strand>GGTCTCTCTCCTCACTCTTTCTTCTTTTCTCCTTCCTTCATAGTTCCTTCCTTCCTTCTCCGAAAAGCTAGCGGTTGAGTCTGAAGAGTGAACAATATATTGTTCGAATGGAGAGAGCCGATAAAAAACTTCATTAAAGCTACTTCGTTTGGCTCTCATTCTCTATCTATCATCGGCCGGCAAGTTTATACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTTCTTATTTCATCTTATACTGCAAGGATGAAGATGGAGGCACCTCCTTCGACAATCTTGTTTACTGATGATGATAGCAAGAACCTGGAGCAATTGCTTGATGTCTTTGGATCTGTTGTCTCTCTCGATGACATCGCTGCAGCTTATTGTAAAGCAGGTCGGGATCCAATTATTGCAGGTGATATACTTGGAGATCAGAAACCTAGCAGCTCCGGAACTACTAACTCTGAGATGGAAGAAAACATAGAGGATTCCGTGACTCTGACTTCTGAATTTGAGGAAGTAGGGGACTCTATGATATCGACATCTGCATCTGTATCTGAGATTGATGCCAAGAGAGTTGGTCCCAGGTCATCAAAGCAAAAAAAGTTATCAGTGTCTATGGGGACTGTCTCAAGCATGATCCCAAAAGACTATCTGACGAATAGGCCACTAATTACAGAAACTTCTACGAGAATCAAGCCACTGAAATTAAGCGCAGATGATTTCTTAACCCCAGAGCTAAGGGAGGAGAAAGCTCCATTAGGTGCTGCAGCTATGAGTGAAACCCTGCCCAGCAGTGTAGAGGAGTTCCTCTTCAACATGCTGGGAAGCGGATTTTCTCTTGACAGGAGTGTAATTGGAGATGTTGTTG.......................................................................................................................................................................................................................................................................................................................................................................................................GTCAATGCAGCTACGATCTGAACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGGATAAGCTGCTAGATATGTCCGCATCAACTTTGGGAAAGAGCGATGATATTATAAATATAGGTGTCAAGAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTGGAGAGTTCAGATTTTGCATCAGTTGTATCAAAAGAGACATCTTCAATGACAGATCCAGCCATCCG..................................................................................................................................TTCCAAAGCAAATGAGAAGACTAAAAATGGGCTCAAGTTATCTATGAAGGAGCAGGAAAGGTATGAGATTCAAAAGGAAGTTCTGCATGCATTGTTTGATGTACCTGCAGCTTCAAGATATGATAATGTGGATGAAGTGATTCGTCCGGTGAAGGAAGTTGGGAAGTCTAGTAGATTAAATCTCGTTGTAGATAAACCATTACAGGAGACTTTAGAACGCCAGATTCTTATCAGGACACCACAAAGTGATGCAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGAGGAGGATGAAGAAAGCTACGAAGTTCTTCGGAAAGCTGTAAAGGAGTACTGGATTACAATGAAAGAGTACTATAATGCA........................................................................................................................................GCTTCTGAAGCATTCTCCAAAGGAGATCATGATCAAGCACGCAAATTCCTGGAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAATTTTTCATGACGAAGGCGCAAGTGACGGATGAAAAATCCTCTCAAAAGCTTCTTGAAACCAG............................................................................................TTGCAGTTCCAGCAAAGAAATTGTGACACTCGACCTTCACGATTTGGAGCCAAAGGATGCAGTGCGCTTACTCAAACTTCAGTTGACTTCTCTTTGTGGATTCTCGT...........................................................................CTATTCAATATCTCAAAATCTTAGTTGGGATCACTGCTGAAGAAGCTAAAGGTCCCCGGAAGCGTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAATTTTTGGAGAGGGATTCCATACCATGGACGGAGGAAGAAAATGGCACAGTGCTTGTGATAAGAGTGGATGTGATAGATCCGCGGAAAATGACTTTTGCTAAAAAATCAACTGCCAGAGTCCGATAAATACATCACTGAATAGATCATTGTTCTAAAGCATGAATTTTGTATCAACTTGGATCTTGTGAAATGCTTTGATGCTTCTGCATTTTTTATAACCACAAGGAACAACCTTGGCCTTGCTACCAAAAAGACTTGTATTTGATTCTTTAATTTCTCTTCTTAATTCTCAAGCCGGTGAGCAAGTTTTGCTTAGGCACCGATTTACTTGGTAAAGACTAATAGCAAATTGATTTCAGAAGTACATTATATGAAACATGCAATGCTTTGACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/nudTlEdkFl" ref_id="SGN-U315903" ref_strand="+" ref_description="SGN-U315903        Tomato 200607 #1 [34 ESTs aligned] arabidopsis/peptide: | Symbol: None | GTP-binding family protein, contains Pfam domain, PF01926: GTPase of unknown function | chr1:19741161-19744016 FORWARD | Aliases: F14G24.25, F14G24_25(evalue: 0, score=791) genbank/nr: Nucleolar(evalue: 0, score=796)">
      <seq>ggtggagtgtatactacaaaccggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgctgatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagtgagctctacaaagtcatagactcttctgatgtcgttattcaggttcttgatgccagagacccctgtggtacaaggtgctaccatttggagaaacatttgaaagaaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctgcttgggcaacaaagggatggcttagagtgctctctagggaatatccaactttggcatttcatgcaagtgtcaccaagtcctttggaaagggttctcttttgtcagtgctgagacagttttctcgtctaaagagcgataagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtttgcaaggtggctcctatcccaggagagactaaagtgtggcagtacattacactcacaaagaggatattcttgattgattgtcctggtgtagtttatcagaatcatgattccgaaacagatatagtcttgaagggcgtggtacgagtgacaaacctacctgatgcttctgaacacattagcgaagtgttgaatcgcgttaagaaggagcatcttaaaagagcttataagatagagaattgggttgacgagtatgactttcttcaacagctatgcaagtcttcaggcaaacttctgaagggaggtgaacctgactacaatactgctgccaagatggttctccatgattggcaaagaggcaacattcctttctttgttccacctccaaagcttgatgatgagccaaatgaacttgtcgcagaggcagacacagccgttgataacgatcaggccacagctgctctcaaagctattgctgacgtcgtttcatcacaacaactgaaggaagttcctgttcaggaggaactatttagtaaggctgagctgttgggtgaaaactaatatgggcggattatcctttagacttgcaacatccacagttctggaatcgagttttcgtatatcgtttttacaatcttttagttgggtccattgcattcccagagttttctagtcctagaagagattgatatactggtcgaaaatatagatacctcgtatttttgttttaacgtttatttcgaattgagtgttaatggaaatgattaatatcatctagctcaacttgtttaacaaaaaaaaaaaagctccactaaatgtggcccacaaaaaaaaaataaaaaaatcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0227C07-I7LB9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0227C07.1" temp_strand="-" temp_description="C07HBa0227C07.1  AC232630.1 htgs_phase:2 submitted_to_sgn_as:gi|205277506|gb|AC232630.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0227C07, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="43356" stop="37022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43057" g_stop="42732" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42731" i_stop="42388" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42387" g_stop="42254" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="460" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42253" i_stop="41989" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41988" g_stop="41859" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="590" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41858" i_stop="41743" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41742" g_stop="41585" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="748" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41584" i_stop="41089" i_length="496">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41088" g_stop="40987" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="850" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40986" i_stop="40827" i_length="160">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40826" g_stop="40722" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="851" r_stop="955" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="40721" i_stop="40561" i_length="161">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40560" g_stop="40432" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="956" r_stop="1084" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="40431" i_stop="39842" i_length="590">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39841" g_stop="39701" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1085" r_stop="1225" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="39700" i_stop="38739" i_length="962">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="38738" g_stop="38638" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1226" r_stop="1326" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="38637" i_stop="38362" i_length="276">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="38361" g_stop="38304" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1327" r_stop="1384" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="38303" i_stop="37816" i_length="488">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="37815" g_stop="37323" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1385" r_stop="1877" r_length="493" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1909" polyA_stop="1920"/>
      <MATCH_line gen_id="C07HBa0227C07.1" gen_strand="-" ref_id="SGN-U315903" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1877</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0227C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43057" e_stop="42732"/>
          <exon e_start="42387" e_stop="42254"/>
          <exon e_start="41988" e_stop="41859"/>
          <exon e_start="41742" e_stop="41585"/>
          <exon e_start="41088" e_stop="40987"/>
          <exon e_start="40826" e_stop="40722"/>
          <exon e_start="40560" e_stop="40432"/>
          <exon e_start="39841" e_stop="39701"/>
          <exon e_start="38738" e_stop="38638"/>
          <exon e_start="38361" e_stop="38304"/>
          <exon e_start="37815" e_stop="37323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGAGTGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTGGTATGTGTCTTCTACTTTGCTTTATCAGGCTTTTGCTTGTGCTTGTGACTTGTCAAAGTCAAGCTATATTTCTTGGTTTATTTTGATACCTACCGCTTTATTTAAAGGACTTTGGTATAAAAAGGACTTTTAAGGCATAGGTGGCCTGATTTTACCTAGATAATCTTGCTTGCAATATTTGTGGTCCTCTAGAGAAAAATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCTACTCGAGCTATTAAGGAGGGAGAGGAGTTTTGGGTTCCTGAACTTTAGTCCAAACTCCCTAAGAGTTGTGCTATTGTCCTGTTTCCTGTTGGATATGTAATACACCATGAACTGGAACGTACTAGTATCAATAAAGAAAGATTTATAATCTACATAGCCCTCGATTTATGTGTTATTTATCCATTGCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTAATCCTGGGGACCTTTATAAAAAAATTGAAAGATTTATCTTGTTGTATAGGATATCTTCCCTTTATTACAGATTCCTTTGCCTCGTCTCAGTTGATGAAATATCTTCTTGTCTATATCACTTTGCTGTAAGCATGAGGTTCTTTGACTGACTACCTCAAAACCTCAAAATTTGGGGTTCCATTTCCAGGTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCCCAAAATTCCATATCTAGAATCTCTGTTCTGCTTAAATGATATTTTGATATTCCAGGGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAGGTAAATTGAAAATTTATAACTTGATGATTATATTTTGTTATACTTTTCATTAGTCTCTCGGGTATGATCTGAAGTGTTTTGTGCTGTTTGTCAGCTCATATAGGACGATCACTTAAACCGGTTCCTTTTATGTTTTTTCATTAGTTCATGTAGGACAAAGTGAAGCTCACTAGACGAACACTTGGTAGTCAAAGTTAAAGTTATGTAGCAGTATTGTTGGACAAAAATAATTGAGAACTCAGTTGGCCTCTAATAAGTGTTAATTGTGAAGTAGCACTTTCAGGTTGAGAAATGATTTCCTAAATGATAGAAAAATTGTAATGTCAATTTTATATATATCTTTATTCTACAGGGATTTTCGATAAAATTTGCATATTTGGCTACAATTCTGCAATGTGCTTGACATCCTTGTACTACTTTTCTTTTAGTGCTTATGGCTGTCCAGAGAGTAGTATAGTTGGTATAAAATCTTAATTTGTGCTATTCAGGGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAG</genome_strand>
        <mrna_strand>GGTGGAGTGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG....................................................................................................................................................................................................................................................................................GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/nudTlEdkFl" ref_id="SGN-U327157" ref_strand="+" ref_description="SGN-U327157        Tomato 200607 #1 [4 ESTs aligned]">
      <seq>aattccagagatgtgttcttatggtgatttgagatcaaatatcctcttgtgttcactttttataagtacttcaattttgttttcctagaagttcttattgttggcatttttttaaaatgaaattttggtcgccaatgttaatttaggctagctactaggacagcgcttctatgactggcatacataggatgatctcatatagttatgatgtcggaagcatttagtcatgaatacatttggataggggaagattggaaacaaatcaattgcaatgatgctgttgtgtggatgctggtcttccctactttggaacttcgatgatattgctctgaaagaggtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0227C07-I7LB9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0227C07.1" temp_strand="-" temp_description="C07HBa0227C07.1  AC232630.1 htgs_phase:2 submitted_to_sgn_as:gi|205277506|gb|AC232630.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0227C07, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="39803" stop="38862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39503" g_stop="39162" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0227C07.1" gen_strand="-" ref_id="SGN-U327157" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0227C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39503" e_stop="39162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCT</genome_strand>
        <mrna_strand>AATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/nudTlEdkFl" ref_id="SGN-U320751" ref_strand="+" ref_description="SGN-U320751        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | regulator of chromosome condensation (RCC1) family protein, low similarity to UVB-resistance protein UVR8 (Arabidopsis thaliana) GI:5478530; contains Pfam profile PF00415: Regulator of chromosome condensation (RCC1) | chr3:5209027-5211752 FORWARD | Aliases: MJK13.9(evalue: 0, score=707) genbank/nr: gi|18400769|ref|NP_566512.1| expressed protein [Arabidopsis thaliana] gi|7021728|gb|AAF35409.1| unknown protein [Arabidopsis thaliana] gi|15795108|dbj|BAB02372.1| gene_id:MJK13.9~unknown protein [Arabidopsis thaliana] gi|23297250|gb|AAN12924.1| unknown protein [Arabidopsis thaliana](evalue: 0, score=707)">
      <seq>caaggacccctcaactcaattttcattcatagatccgatatttgctcaaatttgtgtttataaagttcctatctttgtggggttttggagttttttcttgtaatttggtagaaaaagagtttaattttgttttgtttgttcaagtttgtgttttggggttgttgtttcttgatgatttatttcgacttagattataagatttccccaccaagtccttcattttcttattcaatttcatcaaattttcttacatctgatattttcttgataaagtgtgttaattgtttccattttcgtataaaagattgtttttgtgaagggaaaatgggggatcgtttgaggtcaactttaatggaggatttgccagtacatttgattcttgaaatattgatgtgcggtcgattagctgttattgatttaataagtttagagctaacttcaaggacttttaggggaacacatggtttgtttcctaaaaagttcaagtctttggtagattatgctgcttttcagctttgtggattgagttcaatctatgcttctttgcattgtaatgctcaggaagagctgttgacgcgatgtaacggcaattggaagcgtcttttgaggttcttgatggctgtggaacagtcctctgatatggttgaaacttctgcaggcaatatgcaaataaggagtggcaggtatcacacactgctaatcaatgattcagcagcatactcttgtggttccagtttatgcggcgtccttggtcatgggcctgaaacaactcagtgtgtggaatttactcgaattagctttcctgttcccgtacaagttgcgcaagtttcagcttctcataatcatgctgcttttgtcacagggtctggacaggtgttcacatgtggagataactcatcattctgttgtgggcatagagacactggacgcccaatcttcaggccaagaatggttgaagcattgaaaaatattcctgtcaagcaggttgctgcaggtctcagttttactatgtttctcactaggaaaggtcatgttttcacatgcggaacgaacggacatggtcaacttggtcatggtgacacatcggataggccaacaccgacatgtatagaactactcgcatctattggttctgtagttcagattgctgctggacctagttatgcacttgcagtgtctgatgatgggactctatactcttttgtttcgggtactaatttctgccttggtcatggagaacagcagaatgaactccagccacgtgcaatccagtcgtttaagaggaagggcattaatgtggctcgtgtttctgctggagatgagcatgttgtggcactggattccactggatatgtatatacttgggggaaaggttattgcggtgcattggggcatggtgatgagactgataagactactccgtcacacttgaccagccttaagagccatctagcagttcaggtttgtgcaagcaagaggaaaacgtttgtccttgtggacgatggttctgtttatggctttggctggatgggttttggtagcctcggattccttgacagaggagcatcagataaagttttgaagcctcgtatcctggagagcttgagatcccatcacatatctcaaatcagcactggcttataccacacagtagttgttacaaattgtggacgagtctttggatttggagacaacgaaagagcccaacttggacatgatgcagtaaggggatgccttgaacctacagaaatgtttatggagaaagcaataagtacaaaatattgactgaccaaacaaatattgtttctacatcgttatataacatttcaaaaaatgacttgaatgttttgtgattagatcttttgtaaagaacttttttgttgtatgatacaaaaaagacaaatcatacattattgtcttctgaagttcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0227C07-I7LB9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0227C07.1" temp_strand="+" temp_description="C07HBa0227C07.1  AC232630.1 htgs_phase:2 submitted_to_sgn_as:gi|205277506|gb|AC232630.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0227C07, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="51819" stop="57009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52119" g_stop="52781" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52782" i_stop="53318" i_length="537">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53319" g_stop="53528" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="873" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53529" i_stop="54348" i_length="820">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54349" g_stop="54459" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="874" r_stop="984" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54460" i_stop="55452" i_length="993">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55453" g_stop="55821" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="985" r_stop="1353" r_length="369" r_score="0.997"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55822" i_stop="55947" i_length="126">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55948" g_stop="56055" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1354" r_stop="1461" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56056" i_stop="56235" i_length="180">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="56236" g_stop="56703" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1462" r_stop="1929" r_length="468" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1930" polyA_stop="1947"/>
      <MATCH_line gen_id="C07HBa0227C07.1" gen_strand="+" ref_id="SGN-U320751" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1929</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0227C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52119" e_stop="52781"/>
          <exon e_start="53319" e_stop="53528"/>
          <exon e_start="54349" e_stop="54459"/>
          <exon e_start="55453" e_stop="55821"/>
          <exon e_start="55948" e_stop="56055"/>
          <exon e_start="56236" e_stop="56703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGACCCCTCAACTCAATTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAATGTACTATTTCTTTGGAAAACTTGTTATTCGTTTATCAATGTTTACTTTGTTTGGTTGATTGCTATTTTTAGGACTAATAATATATGGTCGAAATGTTACTTATCAAATAGATGGATGAAATGTTTTCAGACACTATTTTTGTTGTTGTCAGTCAGATAGGGCCAAAAATGACACTTCTCGACCCCTTTTCGGCTTCTTCGTGTATTTACCTTATTGTATTTTGAACTCCTTAGTGAAAATTTGGACTCTTCAACTGGATGGAGCGCGTGATTCCTCTGCTTCACATATAGCAGTAGGTACTAGGCTATCTTTTTTTGTTTGGTTAAGGAATTGTATGTAAGGTTTAGTGAATTATTTAGTATTGCAATGAAATGGGACCAAATAGAATGGAATGGATAACGGTTTTATGATCGAGGTTTAGTTGCTGATTGATTTCTACCTTAATATTTCTAGATTTTAGTTACTCGCTTCTACTAGAATAGTCTGCAGCTAGGACTTCATCTTTTGTTATTACTTACTGTAAAAAGTTCTTGGCAGATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAGGTTTGGCAATCGGCGTATATTATCAACTACTCTCATTTTTATTACAGTAATTTACCTTTTACGTGCACTTTGTTTTTTGCATGCATGATGTGGAAATCCTCGTTCTGTTGAGGAGTAAAGTAAAGAAGGTGAAAGAGGAAGAATGAAAATGGAGACAAGCAATCCAATCACATTTTCGTTTTTTTGGGAAATTATTTTAGGAGAGGTTCCTTTGGGAGACTGATACTAATATTGTTGAAATATATATTGACTTTGAAAAATGCAAGAACTGCCACACCATGCCACTCTGCAAAAAATAATTCTTACTATTTTAGTATGAGTTGGACCTAAAACTTACCGGCATGGTGTGGTCAATAAAATGGGGCTAACCTTAGAGACTATTAACAAAAAATACTCGGTGAATTCTTCCTATTTGCTTAAGCTTTAGTATACAATGTTAGTCGATACTTCTATGTTTCTATCTAAGTGCTGATCAAATACTTCTGCTCACTTTTTCCTATCCCTTCTGGGGAAAATCAGTCATCATTCTGCCAATTTGTAATGGCTAGTGCTACTGCAATAAAATAAGATAGAAAAAAAATTTATATTTCGAGCAGATTGATGCACCTTACGATGAGAGAGCCTCTCAAGTTTTGTACCGCTTAGACATATCCCTTACGAAAGTCCACAGTAGGTTGCAATATTCGAAGTGTGTTAGAGAATCATTCTCTGTTGTAAATATGCTAAAAACTGCCATGTTTTGTCTACTTCTACAACATAGAATGTATATACATACTATTGCATTTTATATTATTCATGAGGTTTACAATTCTTGGTATAGGTGTTCACATGTGGAGATAACTCATCATTCTGTTGTGGGCATAGAGACACTGGACGCCCAATCTTCAGGCCAAGAATGGTTGAAGCATTGAAAAATATTCCTGTCAAGCAGGTAAATTTCTTTCTATCACGTCATGCCATCTAATTGACGGGATTACCTCAATACATGTTACAGATTTGGATTCTTTTTTGATGTTGTTGTTTTTGTTGAAAACTGTAAGTTCAATAGAGATTGAGATTCTATACATGGTTTACGATTAAGTTGATCTTTTAGTTCTGCTAGATCAATTTATGGGAATAAATGATACTGCGTCAAAATTTATTTGTTTGTTTGGAGGAGTACTGGTTAAGAAAAAAATGATGTGATGATTTGAAATATCTGCAACTTAGGAGGATTTTAGAGTCTGCCAGGAATTTCTGGTCTCTCTTATCAAGACCAACTACGAAAGAAAATAGGGAACCGAAGGATAAACTCCACTAAGTTTTAATAGCATAATTCAAGCTGTGAATGACATAAACACCTTCTTGTTCCTATGTTTTATTGCAATAAGCTTTCTGTCATTTCTTGAAATGCTTTTTGATAAAATTGGATCGACAAGCCACTCTTGAATAAATGAAGGCTAAAAATGAAAACGAGGTATTTTTAAGAGTTAGGCAACACCTATGACATGTCCATTAGTTTTAGTTGCAAATTGGAAATACCATTGTAGGTGTTACGGTGCTAATGCAGATCTAATTGGTTCCCAGCAATGTGTATGTGATGCTCTTCTGCATTTTTTCATTGTCTGTAAATGTTTTGGGTTCGTTTATCTTTAAAATTGGGCTTAATTTTGTAGTATCTTTGAAAAAGTACTCTCTCCATTTCAATTTATTTGTCTGATTTTGATTTGACACGGATTTTAAGAAAGTAAGGAAGATTTTTGAATAGGATATATTGAATGTATTAAAATGTCCTTTAATCTTATGCCTTAAACATTCCATGTGGTAAAGTTGGAAATAAAGAGTTGCCTAACACGGAAAGAACATTCTCTTTTAGACATACTAAAACGTGAAGCTGTTAAGTTTTGTCATAATACATTGCTCACTACTGTTGGAACTGGTTCAGGTTGCTGCAGGTCTCAGTTTTACTATGTTTCTCACTAGGAAAGGTCATGTTTTCACATGCGGAACGAACGGACATGGTCAACTTGGTCATGGTGACACATCGGATAGGCCAACACCGACATGTATAGAACTACTCGCATCTATTGGTTCTGTAGTTCAGATTGCTGCTGGACCTAGTTATGCACTTGCAGTGTCTGATGATGGGACTCTATACTCTTTTGGTTCGGGTACTAATTTCTGCCTTGGTCATGGAGAACAGCAGAATGAACTCCAGCCACGTGCAATCCAGTCGTTTAAGAGGAAGGGCATTAATGTGGCTCGTGTTTCTGCTGGAGATGAGCATGTTGTGGCACTGGATTCCACTGGATATGTAAGTCATAGTACCTAAAAAATAACACGATATTATAATTTCATTTAAGATGTATGCTAAGAGTTGGTTAACTGCAGAAAAGAATAAAGTGCTGTCACGACTGATGATTGATTTTCGTGATTTCAGGTATATACTTGGGGGAAAGGTTATTGCGGTGCATTGGGGCATGGTGATGAGACTGATAAGACTACTCCGTCACACTTGACCAGCCTTAAGAGCCATCTAGCAGTTCAGGTCTGGCATTCTTTTACTTTTGCTAGTCGATATTACAAAGATCAGTATTAACATTTGGAAACATGAAATAACTCAAATTAGTGTATAACGCCAGTAATATGATACAAAGTAATTCAAGGCTTGTAACATACATAACAGTCTTCCTCGTCCTAGCTTAATTTTGCCTGCCTCTATTGGTAGGTTTGTGCAAGCAAGAGGAAAACGTTTGTCCTTGTGGACGATGGTTCTGTTTATGGCTTTGGCTGGATGGGTTTTGGTAGCCTCGGATTCCTTGACAGAGGAGCATCAGATAAAGTTTTGAAGCCTCGTATCCTGGAGAGCTTGAGATCCCATCACATATCTCAAATCAGCACTGGCTTATACCACACAGTAGTTGTTACAAATTGTGGACGAGTCTTTGGATTTGGAGACAACGAAAGAGCCCAACTTGGACATGATGCAGTAAGGGGATGCCTTGAACCTACAGAAATGTTTATGGAGAAAGCAATAAGTACAAAATATTGACTGACCAAACAAATATTGTTTCTACATCGTTATATAACATTTCAAAAAATGACTTGAATGTTTTGTGATTAGATCTTTTGTAAAGAACTTTTTTGTTGTATGATACAAAAAAGACAAATCATACATTATTGTCTTCTGAAGTTC</genome_strand>
        <mrna_strand>CAAGGACCCCTCAACTCAATTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCACATGTGGAGATAACTCATCATTCTGTTGTGGGCATAGAGACACTGGACGCCCAATCTTCAGGCCAAGAATGGTTGAAGCATTGAAAAATATTCCTGTCAAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGCAGGTCTCAGTTTTACTATGTTTCTCACTAGGAAAGGTCATGTTTTCACATGCGGAACGAACGGACATGGTCAACTTGGTCATGGTGACACATCGGATAGGCCAACACCGACATGTATAGAACTACTCGCATCTATTGGTTCTGTAGTTCAGATTGCTGCTGGACCTAGTTATGCACTTGCAGTGTCTGATGATGGGACTCTATACTCTTTTGTTTCGGGTACTAATTTCTGCCTTGGTCATGGAGAACAGCAGAATGAACTCCAGCCACGTGCAATCCAGTCGTTTAAGAGGAAGGGCATTAATGTGGCTCGTGTTTCTGCTGGAGATGAGCATGTTGTGGCACTGGATTCCACTGGATAT..............................................................................................................................GTATATACTTGGGGGAAAGGTTATTGCGGTGCATTGGGGCATGGTGATGAGACTGATAAGACTACTCCGTCACACTTGACCAGCCTTAAGAGCCATCTAGCAGTTCAG....................................................................................................................................................................................GTTTGTGCAAGCAAGAGGAAAACGTTTGTCCTTGTGGACGATGGTTCTGTTTATGGCTTTGGCTGGATGGGTTTTGGTAGCCTCGGATTCCTTGACAGAGGAGCATCAGATAAAGTTTTGAAGCCTCGTATCCTGGAGAGCTTGAGATCCCATCACATATCTCAAATCAGCACTGGCTTATACCACACAGTAGTTGTTACAAATTGTGGACGAGTCTTTGGATTTGGAGACAACGAAAGAGCCCAACTTGGACATGATGCAGTAAGGGGATGCCTTGAACCTACAGAAATGTTTATGGAGAAAGCAATAAGTACAAAATATTGACTGACCAAACAAATATTGTTTCTACATCGTTATATAACATTTCAAAAAATGACTTGAATGTTTTGTGATTAGATCTTTTGTAAAGAACTTTTTTGTTGTATGATACAAAAAAGACAAATCATACATTATTGTCTTCTGAAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/nudTlEdkFl" ref_id="SGN-U327094" ref_strand="+" ref_description="SGN-U327094        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | lanthionine synthetase C-like family protein, contains Pfam domain, PF05147: Lanthionine synthetase C-like protein | chr2:8952399-8955361 FORWARD | Aliases: F5H14.26, F5H14_26(evalue: 4e-53, score=204) genbank/nr: gi|30681129|ref|NP_850003.1| expressed protein [Arabidopsis thaliana] gi|17380956|gb|AAL36290.1| unknown protein [Arabidopsis thaliana] gi|20465391|gb|AAM20120.1| unknown protein [Arabidopsis thaliana](evalue: 2e-51, score=204)">
      <seq>aataaagaaaaaaacttacactaccccggatagacttgctctgttctgtcttctgagaaccaccggagctctgttctttccataaatttgttccggcggaggattcaacagaaccggaaataaagagatgccagatcgtttctttccaaacaccatgcctagttttgttgatgaaactacagttaaagaatcatttcttgaaggagcaaaagatccattgttagagcttctgtatttgccttatggtactgtttgcgacaagctcaaaagggttgcttttgatctcaaagaaacgattgtgaaggagacatgggtatgtaaaaggggaagagtgagtgactatacaatttacactggagctttaggaactgcttttttgttatttaaagcttaccaagttactcttgacaagaatgatcttgctctctgttctgatattatcaaggcttgtgactctgcttcccgtggttctgggcgtgtgactttcatatgtggacaagctggtgtttattctcttggtgcagttgtggccaaacagagcggggatgaacaattgtgtgatcactatctgacgaaattcaaagagattgagcttcctaaagatcttccaaatgagttgttgtatgggagggctggtttcttgtgggcttgttcattcttaaacaaaaatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0227C07-I7LB9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0227C07.1" temp_strand="+" temp_description="C07HBa0227C07.1  AC232630.1 htgs_phase:2 submitted_to_sgn_as:gi|205277506|gb|AC232630.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0227C07, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="56858" stop="59024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57158" g_stop="57452" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57453" i_stop="57543" i_length="91">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57544" g_stop="57722" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="474" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57723" i_stop="58452" i_length="730">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58453" g_stop="58564" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="586" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58565" i_stop="58637" i_length="73">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58638" g_stop="58724" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="673" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0227C07.1" gen_strand="+" ref_id="SGN-U327094" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0227C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57158" e_stop="57452"/>
          <exon e_start="57544" e_stop="57722"/>
          <exon e_start="58453" e_stop="58564"/>
          <exon e_start="58638" e_stop="58724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAAGAAAAAAACTTACACTACCCCGGATAGACTTGCTCTGTTCTGTCTTCTGAGAACCACCGGAGCTCTGTTCTTTCCATAAATTTGTTCCGGCGGAGGATTCAACAGAACCGGAAATAAAGAGATGCCAGATCGTTTCTTTCCAAACACCATGCCTAGTTTTGTTGATGAAACTACAGTTAAAGAATCATTTCTTGAAGGAGCAAAAGATCCATTGTTAGAGCTTCTGTATTTGCCTTATGGTACTGTTTGCGACAAGCTCAAAAGGGTTGCTTTTGATCTCAAAGAAACGGTAATCACTTCTCTTGAGTATAGAGTGCCTGCTAGGTGTTTGTGTAAATTCCCTGTTTTTTTTTTCTAATTTTGATTTTGATATGTTTCAGATTGTGAAGGAGACATGGGTATGTAAAAGGGGAAGAGTGAGTGACTATACAATTTACACTGGAGCTTTAGGAACTGCTTTTTTGTTATTTAAAGCTTACCAAGTTACTCTTGACAAGAATGATCTTGCTCTCTGTTCTGATATTATCAAGGCTTGTGACTCTGCTTCCCGTGGTTCTGGGTACACTCCCTTTGCAAAATTTCACTCTTTTTCCTATGATTTGAGCTAAAATTTGATTTGTGTTGTCTGAAGAAAGATGATAACTTTTTGGTATATGAACATATCTTCTGGTTTTAATTATCCTGCATGAGAAGTCATCTTAATCTTCATGATAAACAATGGCGACCAAAAACTATAACGGTGCTAAGTGTAAGTTCGATCCACATGAAAGGTGTAACGAACTGATCACTGTATTGGTGAGTTGCTCGGTTAATTAGACATGTCTGTGAAGATGACTGGATAAAAAAGACCCTATGAATAAGGAAATAGAAGGTAAAAAAGTTGAAGAGATGAAGAGGAAATTGATGCGTTTAGAAGGTTCTGTCCTTTTACATGGGTTGAGTATTAGGGAAAGCCATAGTCTGTTTTTATGTAACCTTAGTTCTAGTTTCAAGTTAAATGTTCTATATTTTTTGTGAGTTTTACTAAACCGTTCACTCAATAATCAAGTAATCTGTTAATATAAATCGGATAGGGAAGACCATGAAGTAAACTAGTTTCCGATCAGATGGGAGTAGACCTGTAAAAGTTGGTTGGATCCCTTGTAGATTGAGTGATGCGGTGGCGGTGGTCAAATGATCCGACCAGACAATCCAATCGAAGTTTCTGTTTCATGATCTCCTCCCACATAGAAACATGTTTTAGGCAAATTACATAACGAGAAGTTGAACTCTAATTTGTGAAACTGCAGGCGTGTGACTTTCATATGTGGACAAGCTGGTGTTTATTCTCTTGGTGCAGTTGTGGCCAAACAGAGCGGGGATGAACAATTGTGTGATCACTATCTGACGAAATTCAAAGAGGTTTTTTTTTTCATTGTTTCGAGCTTTTTCTGTTGATGTCAATAGTCTTCTCATTATCTATCTACAAATGCAGATTGAGCTTCCTAAAGATCTTCCAAATGAGTTGTTGTATGGGAGGGCTGGTTTCTTGTGGGCTTGTTCATTCTTAAACAAAAATATT</genome_strand>
        <mrna_strand>AATAAAGAAAAAAACTTACACTACCCCGGATAGACTTGCTCTGTTCTGTCTTCTGAGAACCACCGGAGCTCTGTTCTTTCCATAAATTTGTTCCGGCGGAGGATTCAACAGAACCGGAAATAAAGAGATGCCAGATCGTTTCTTTCCAAACACCATGCCTAGTTTTGTTGATGAAACTACAGTTAAAGAATCATTTCTTGAAGGAGCAAAAGATCCATTGTTAGAGCTTCTGTATTTGCCTTATGGTACTGTTTGCGACAAGCTCAAAAGGGTTGCTTTTGATCTCAAAGAAACG...........................................................................................ATTGTGAAGGAGACATGGGTATGTAAAAGGGGAAGAGTGAGTGACTATACAATTTACACTGGAGCTTTAGGAACTGCTTTTTTGTTATTTAAAGCTTACCAAGTTACTCTTGACAAGAATGATCTTGCTCTCTGTTCTGATATTATCAAGGCTTGTGACTCTGCTTCCCGTGGTTCTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGTGACTTTCATATGTGGACAAGCTGGTGTTTATTCTCTTGGTGCAGTTGTGGCCAAACAGAGCGGGGATGAACAATTGTGTGATCACTATCTGACGAAATTCAAAGAG.........................................................................ATTGAGCTTCCTAAAGATCTTCCAAATGAGTTGTTGTATGGGAGGGCTGGTTTCTTGTGGGCTTGTTCATTCTTAAACAAAAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/nudTlEdkFl" ref_id="SGN-U342178" ref_strand="+" ref_description="SGN-U342178        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | lanthionine synthetase C-like family protein, contains Pfam domain, PF05147: Lanthionine synthetase C-like protein | chr1:19713028-19714689 REVERSE | Aliases: F14G24.19, F14G24_19(evalue: 6e-79, score=290) genbank/nr: gi|15219126|ref|NP_175700.1| G protein-coupled receptor -related [Arabidopsis thaliana] gi|25405614|pir||E96570 hypothetical protein F14G24.19 [imported] - Arabidopsis thaliana gi|12324628|gb|AAG52264.1| putative G protein-coupled receptor; 80093-78432 [Arabidopsis thaliana](evalue: 4e-77, score=290)">
      <seq>ccaaatgagttgttgtatgggagggctggtttcttgtgggcttgggcattcttaaacaaaaatattggtagagaaacaatatctccaacccaaattcgagcagttgttgctgaggttataaagtccggacgaaaaatggggaaaggaaaatgtccactgatgtatgaatggcatggaaaaagatactggggtgctgctcatggactagctgggataatgcatgtacttatggacatggaactgaaagcagatgaggtcgaggatgtgaaggctacactgcattacatgatccgaaatcgttttcctagtggaaattacccctcaagtgaaggaagtgaatctgaccgacttgtgcattggtgtcatggtgctccaggtgttgcccttactctaatcaaagcagctaaggttttcagcaatgacgagtttctgcaggcagctatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0227C07-I7LB9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0227C07.1" temp_strand="+" temp_description="C07HBa0227C07.1  AC232630.1 htgs_phase:2 submitted_to_sgn_as:gi|205277506|gb|AC232630.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0227C07, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="58359" stop="59637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58659" g_stop="58754" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58755" i_stop="58835" i_length="81">
            <donor d_prob="0.790" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58836" g_stop="59147" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="408" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59148" i_stop="59300" i_length="153">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59301" g_stop="59337" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="445" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0227C07.1" gen_strand="+" ref_id="SGN-U342178" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0227C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58659" e_stop="58754"/>
          <exon e_start="58836" e_stop="59147"/>
          <exon e_start="59301" e_stop="59337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATGAGTTGTTGTATGGGAGGGCTGGTTTCTTGTGGGCTTGTTCATTCTTAAACAAAAATATTGGTAGAGAAACAATATCTCCAACCCAAATTGTAAGAAACTTCACAAATTTCGATCACGTATGCTTCCTCATTATGAATGGCTCTTTATTTCTTCGGAATTTTTTTATGCAGCGAGCAGTTGTTGCTGAGGTTATAAAGTCCGGACGAAAAATGGGGAAAGGAAAATGTCCACTGATGTATGAATGGCATGGAAAAAGATACTGGGGTGCTGCTCATGGACTAGCTGGGATAATGCATGTACTTATGGACATGGAACTGAAAGCAGATGAGGTCGAGGATGTGAAGGCTACACTGCATTACATGATCCGAAATCGTTTTCCTAGTGGAAATTACCCCTCAAGTGAAGGAAGTGAATCTGACCGACTTGTGCATTGGTGTCATGGTGCTCCAGGTGTTGCCCTTACTCTAATCAAAGCAGCTAAGGTATGGACTATGGAGTAATACCTTGCACAGACACAGTAATCTTGATGTTAGTTCCTAATAGTTACTATATAAAACTCCTCAATCCGCGTAGACATGAGATGAAATGCGTGATCCTGGAAGGGCTTTCTGCTCATCATTGTCGTAACTTTTCAGGTTTTCAGCAATGACGAGTTTCTGCAGGCAGCTATAG</genome_strand>
        <mrna_strand>CCAAATGAGTTGTTGTATGGGAGGGCTGGTTTCTTGTGGGCTTGGGCATTCTTAAACAAAAATATTGGTAGAGAAACAATATCTCCAACCCAAATT.................................................................................CGAGCAGTTGTTGCTGAGGTTATAAAGTCCGGACGAAAAATGGGGAAAGGAAAATGTCCACTGATGTATGAATGGCATGGAAAAAGATACTGGGGTGCTGCTCATGGACTAGCTGGGATAATGCATGTACTTATGGACATGGAACTGAAAGCAGATGAGGTCGAGGATGTGAAGGCTACACTGCATTACATGATCCGAAATCGTTTTCCTAGTGGAAATTACCCCTCAAGTGAAGGAAGTGAATCTGACCGACTTGTGCATTGGTGTCATGGTGCTCCAGGTGTTGCCCTTACTCTAATCAAAGCAGCTAAG.........................................................................................................................................................GTTTTCAGCAATGACGAGTTTCTGCAGGCAGCTATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/nudTlEdkFl" ref_id="SGN-U340168" ref_strand="+" ref_description="SGN-U340168        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | lanthionine synthetase C-like family protein, contains Pfam domain, PF05147: Lanthionine synthetase C-like protein | chr1:19713028-19714689 REVERSE | Aliases: F14G24.19, F14G24_19(evalue: 2e-67, score=253) genbank/nr: gi|37535720|ref|NP_922162.1| putative lanthionine synthetase [Oryza sativa (japonica cultivar-group)] gi|18071409|gb|AAL58268.1| putative lanthionine synthetase [Oryza sativa (japonica cultivar-group)] gi|31432873|gb|AAP54449.1| putative lanthionine synthetase [Oryza sativa (japonica cultivar-group)](evalue: 3e-68, score=261)">
      <seq>ttttttttttttttttttgtaatttacttttctatacaacttattagagtatgataagatagaatgtttcacgttaccttttaacaatacatcatatgataatacatctaccttacataaaaaagattaacatagccaattctacaacccacaacatgttcattctgtatgtacaaaactagagtgattgtgttcattttctgtatgtacaaaactagagttcataagcagggaaccttgtttctattggatctatcatgtcgaaaaagagataagccattcctcccattccttcaaacaacgagtatggacgatcacctccatgcataactccctctgatatgagtgtttgagctctagtgtgcagaaagcacgcgaaggcctttgccttgtacaagtactcaactttacctgtcaaacgatacagtgaaagaaagacataggaatttccactaacaccgtgacatattccaactcgtttgagtaagcctcgattccaaatcacctcagctgcttctatagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0227C07-I7LB9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0227C07.1" temp_strand="-" temp_description="C07HBa0227C07.1  AC232630.1 htgs_phase:2 submitted_to_sgn_as:gi|205277506|gb|AC232630.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0227C07, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="60140" stop="59030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59853" g_stop="59330" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0227C07.1" gen_strand="-" ref_id="SGN-U340168" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0227C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59853" e_stop="59330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAGGTGAAATTTTTGTAATTTACTTTTCTATACAACTTATTAGAGTATGATAAGATAGAATGTTTCACGTTACCTTTTAACAATACATCATATGATAATACATCTACCTTACATAAAAAAGATTAACATAGCCAATTCTACAACCCACAACATGTTCATTCTGTATGTACAAAACTAGAGTGATTGTGTTCATTTTCTGTATGTACAAAACTAGAGTTCATAAGCAGGGAACCTTGTTTCTATTGGATCTATCATGTCGAAAAAGAGATAAGCCATTCCTCCCATTCCTTCAAACAACGAGTATGGACGATCACCTCCATGCATAACTCCCTCTGATATGAGTGTTTGAGCTCTAGTGTGCAGAAAGCACGCGAAGGCCTTTGCCTTGTACAAGTACTCAACTTTACCTGTCAAACGATACAGTGAAAGAAAGACATAGGAATTTCCACTAACACCGTGACATATTCCAACTCGTTTGAGTAAGCCTCGATTCCAAATCACCTCAGCTGCTTCTATAGCT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTGTAATTTACTTTTCTATACAACTTATTAGAGTATGATAAGATAGAATGTTTCACGTTACCTTTTAACAATACATCATATGATAATACATCTACCTTACATAAAAAAGATTAACATAGCCAATTCTACAACCCACAACATGTTCATTCTGTATGTACAAAACTAGAGTGATTGTGTTCATTTTCTGTATGTACAAAACTAGAGTTCATAAGCAGGGAACCTTGTTTCTATTGGATCTATCATGTCGAAAAAGAGATAAGCCATTCCTCCCATTCCTTCAAACAACGAGTATGGACGATCACCTCCATGCATAACTCCCTCTGATATGAGTGTTTGAGCTCTAGTGTGCAGAAAGCACGCGAAGGCCTTTGCCTTGTACAAGTACTCAACTTTACCTGTCAAACGATACAGTGAAAGAAAGACATAGGAATTTCCACTAACACCGTGACATATTCCAACTCGTTTGAGTAAGCCTCGATTCCAAATCACCTCAGCTGCTTCTATAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/nudTlEdkFl" ref_id="SGN-U343136" ref_strand="+" ref_description="SGN-U343136        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | lanthionine synthetase C-like family protein, contains Pfam domain, PF05147: Lanthionine synthetase C-like protein | chr1:19713028-19714689 REVERSE | Aliases: F14G24.19, F14G24_19(evalue: 4e-86, score=303) genbank/nr: gi|15219126|ref|NP_175700.1| G protein-coupled receptor -related [Arabidopsis thaliana] gi|25405614|pir||E96570 hypothetical protein F14G24.19 [imported] - Arabidopsis thaliana gi|12324628|gb|AAG52264.1| putative G protein-coupled receptor; 80093-78432 [Arabidopsis thaliana](evalue: 3e-84, score=303)">
      <seq>aaaaaagaaataaaaaaatctcaaagatgacagaacgttactatcctaatgaaatggatgagctttcaattgaagaattggtacctgaaaatacaaaagactctttattcaaacttctttcacttccttatgatactattactcaaagactcaagctagatgctataaacctcaaagatgaagttgtgagggagacatggtcaacgaaaggaagacatgtaaaagactacacactctacactggaactttagggactgcttatttactattcaaatcatatcaaattactcgaaacatcgatgatatagcactttgctccgatattattcaggcatgtgacaccgcttgcaatggctttgggccacctacatttataggcggccacgcaggtatttacgctcttggtgctgttgctgcgaagaacaatggtgatgatcagttatgtcaaatttttttgactaaattcaaggagatgaaacttccaatagatcttggagatgacttgttttatggtagagcagggtacttatgggcatgttctttcttaaataaacatcttggcaaaggcacaatatccatctcccaaatgagagaagttgtgaatgaactcgtcaagtcaggtagaaagttgtcgaaattagagaattttaagtctcctttaatgtacgaatcgagggggaaaaagtactggggagctgcccatggattagctggtgttatgaatgttttactagacatggaactgaaacaagatgaaattgaagatgttaaaggaacattaaggtacatgatcaagaatcgattttcgagtggaaattatcgtactagtgaaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0227C07-I7LB9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0227C07.1" temp_strand="+" temp_description="C07HBa0227C07.1  AC232630.1 htgs_phase:2 submitted_to_sgn_as:gi|205277506|gb|AC232630.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0227C07, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="60021" stop="63277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60321" g_stop="60503" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60504" i_stop="61385" i_length="882">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61386" g_stop="61564" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="361" r_length="179" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61565" i_stop="61738" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61739" g_stop="61850" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="473" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61851" i_stop="62400" i_length="550">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62401" g_stop="62517" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="590" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62518" i_stop="62730" i_length="213">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62731" g_stop="62977" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="837" r_length="247" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0227C07.1" gen_strand="+" ref_id="SGN-U343136" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0227C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60321" e_stop="60503"/>
          <exon e_start="61386" e_stop="61564"/>
          <exon e_start="61739" e_stop="61850"/>
          <exon e_start="62401" e_stop="62517"/>
          <exon e_start="62731" e_stop="62977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGAAATAAAAAAAATCTCAAAGATGACAGAACGTTACTATCCTAATGAAATGGATGAGCTTTCAATTGAAGAATTGGTACCTGAAAATACAAAAGACTCTTTATTCAAACTTCTTTCACTTCCTTATGATACTATTACTCAAAGACTCAAGCTAGATGCTATAAACCTCAAAGATGAAGTATTCTTTTCCTTTTATCTTCTTTCTGGATTCAGAATTTAAAGTTTATCGATTTGAGATCACTATTGAATTTAATTAATATGTTTACATATTTATTAGGTTCATTTAAATTCATAACATGTGTTATAAAACGAACATTCACTTGTTTAATAAATGAAAAACTCATTTAGTCCGTAAATTCATGACCGATTAGGGATTTTTTTTTCGTTTCGTTTCAATTTATGTGATATCCCTGTATATGAAGTTTAATTAATGTAGAGAGATTTCATCATGTTTTAAAATTATCCTTAAAAAAAAGATTGAGTATACTTGGATGGACTTTTTGCTAAACAAGTTAGATTTAGCTATAGGTGAAATTAGGATTTTAATTTAACTTGTTGTGAATTTTATCTGACAAGTGGTAATTATTGGGCTTTAAATTAATATTTTTACATATCTAGTGAATTTATTATTGATAGAAATACACTATGCTGCTACTAATATTTTTATATATCTAATGAATTTTTATTGATAGAAATACACTATGCTACTACTTCCTCCCTTGAACTTAAAAGAATGTATTATAATTTTCTAGGTGTGTTAAATGGTTAGAAAATTTGATCAGAATTTGGTCAAAAAATTATTAGTGCTAAAAGGGTAAAAATGTTTTTTAAAAAGTAAAATTATATTTAAAAAATTCATTCTGGTCAAATTTTCTGGCCAAAAAAGATCTTTTCTTTTTAGATTGATTAAAAAAATATGTGTAGTATAAACTGAAACATTGGAGTATTTATTTATGTTTTGCAATTTTCATACTTAATTTTTATGAGTTTGTCTACATTTGAATAATTGAAATTCATTAATTTTTGTGTGTTTCTAATTTTGTGTTCCCTAAATTATAAGGTTGTGAGGGAGACATGGTCAGCGAAAGGAAGACATGTAAAAGACTACACACTCTACACTGGAACTTTAGGGACTGCTTATATACTATTCAAATCATATCAAATTACTCGAAACATCGATGATATTGCACTTTGCTCCGATATTATTCAGGCATGTGACACCGCTTGCAATGGCTTTGGGTACGTCTAAAGACATAATTAAGTAAATAAAAGTATTGTATTTTCAACATTTTAAGCTTACATCATGATTTGTCATGGTAATATTAGAGAATATGTACCGGGAGGTAAATTTTCGATATTTAAATTCTGAAATTTAGTAGGCGTTTGAACGTAGATTTGGTTAAATATATGCAGACCACCTACATTTATAGGCGGCCACGCAGGTATTTACGCTCTTGGTGCTGTTGCTGCGAAGAACAATGGTGATGATCAGTTATGTCAAATTTTTTTGACTAAATTCAAGGAGGTATTCAAATTTTTTCGTATAGTAATGTGATTCGATTATTTTTCTAGTTAGACTAAAATGTGAAGATTTGTAATTTTGATTATATGCTATAAACTCATCTCAAAAGCTAGCTCAAAGAGAGAAGGATTGACCAAGCCTTATAAGGAACTTACCAATTTTATAATCACCGATGTGGGATTTTTGTCATTCTTTAACAGCCCACCCTCACGCCCAGTGTTTAGCATCTGGTGCGTGGACTATTTTGATTTTGGGGGTCCCAACATCGGGTGAGATGGGCCTGCTCTGATACCATGTGAAATAGGTCTTAGGCCTAACTCACATCTTAAAATCTAGCTCAAAGGGAGGAGGATTGCCCAAGACTTATAAGGAGTTCATCCATTTTATTAACCATCGGACTTTTGTCATTCTTTAACAAAATGTGACCTAATGGTGATATGTCTTACACTTGACGATGTATATAACATAAATTCTTTACCCACGCATATTGTATATTCGTATATTTATGTTCCCCGTGATTAATTTTTCGATTTGATTGCTTTTTTTTTTTTAGATGAAACTTCCAATAGATCTTGGAGATGACTTGTTTTATGGTAGAGCAGGGTACTTATGGGCATGTTCTTTCTTAAATAAACATCTTGGCAAAGGCACAATATCCATCTCCCAAATGGTAATTAGCAAGTTTAATTACTCAATCATATAGCTTAATTACGAGAAAATGACGAAAATGATCCTTTATGTTCGAGGTAGTTTCGAAGTAGTCCCTTAAAATGGATTGAAATTGTTATCCGATGGACTACTTTTAACTTACTCTTGAATACGCGGGACTATGTAATTTTCATATTGTTACTATAACTTGGTATTCGAATTTTGTTATATACAGAGAGAAGTTGTGAATGAACTCGTCAAGTCAGGTAGAAAGTTGTCGAAATTAGAGAATTTTAAGTCTCCTTTAATGTACGAATCGAGGGGGGAAAAGTACTGGGGAGCTGCCCATGGAATAGCTGGTGTTATGAATGTTTTACTAGACATGGAACTGAAACAAGATGAAATTGAAGATGTTAAAGGAACATTAAGGTACATGATCAAGAATCGATTTTCGAGTGGAAATTATCGTACGAGTGAAGGAG</genome_strand>
        <mrna_strand>AAAAAAGAAATAAAAAA-ATCTCAAAGATGACAGAACGTTACTATCCTAATGAAATGGATGAGCTTTCAATTGAAGAATTGGTACCTGAAAATACAAAAGACTCTTTATTCAAACTTCTTTCACTTCCTTATGATACTATTACTCAAAGACTCAAGCTAGATGCTATAAACCTCAAAGATGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGAGGGAGACATGGTCAACGAAAGGAAGACATGTAAAAGACTACACACTCTACACTGGAACTTTAGGGACTGCTTATTTACTATTCAAATCATATCAAATTACTCGAAACATCGATGATATAGCACTTTGCTCCGATATTATTCAGGCATGTGACACCGCTTGCAATGGCTTTGG..............................................................................................................................................................................GCCACCTACATTTATAGGCGGCCACGCAGGTATTTACGCTCTTGGTGCTGTTGCTGCGAAGAACAATGGTGATGATCAGTTATGTCAAATTTTTTTGACTAAATTCAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAACTTCCAATAGATCTTGGAGATGACTTGTTTTATGGTAGAGCAGGGTACTTATGGGCATGTTCTTTCTTAAATAAACATCTTGGCAAAGGCACAATATCCATCTCCCAAATG.....................................................................................................................................................................................................................AGAGAAGTTGTGAATGAACTCGTCAAGTCAGGTAGAAAGTTGTCGAAATTAGAGAATTTTAAGTCTCCTTTAATGTACGAATCGAGGGGGAAAAAGTACTGGGGAGCTGCCCATGGATTAGCTGGTGTTATGAATGTTTTACTAGACATGGAACTGAAACAAGATGAAATTGAAGATGTTAAAGGAACATTAAGGTACATGATCAAGAATCGATTTTCGAGTGGAAATTATCGTACTAGTGAAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/nudTlEdkFl" ref_id="SGN-U331920" ref_strand="+" ref_description="SGN-U331920        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | WD-40 repeat family protein, contains Pfam PF00400: WD domain, G-beta repeat; similar to WD-repeat protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) (Homo sapiens) | chr3:5216269-5220225 REVERSE | Aliases: MJK13.13(evalue: 3e-97, score=351) genbank/nr: gi|18400779|ref|NP_566515.1| expressed protein [Arabidopsis thaliana] gi|7021732|gb|AAF35413.1| unknown protein [Arabidopsis thaliana] gi|13937211|gb|AAK50098.1| AT3g15470/MJK13_13 [Arabidopsis thaliana] gi|15795112|dbj|BAB02376.1| WD-40 repeat protein-like [Arabidopsis thaliana] gi|19548013|gb|AAL87370.1| AT3g15470/MJK13_13 [Arabidopsis thaliana](evalue: 2e-95, score=351)">
      <seq>ctagcaagtcttgtttgaaggttttctcacatagtgattatgtaacctgcatccagtttaaccctgttgatgatagatactttatcagtgggtccctagatgctaaggttcgcatatggagcattccagagagacaagttgtcgattggaatgatctgcatgagatggtcacagctgcttgctatacaccagatggtcagggtgcatttgttggttcatacaaggggaattgtcgtcaatacaacacatcagacaataaattgcagcataaagctcaactcaatcttcagaataagaagaagaaggctcaccagaagaaaattactggtttccagtttgttccagggagtacatcagaagtgcttataacatctgcagattcgagaattcgggtggttgatggtgttgatcttgtccacaagttcaaaggttttcgcaatacaaacagccaaatctcagcctctgtgactgctgatggtagatatgtggtctgtgccagtgaggactcacatgtctatatctggaaacatgaaggtgattctcggccaagcaggaatagaggcgttaccattacacagtcgtacgagcatttccattgtcaagatgtttcagtggccataccttggcctggcttatctgataatctgaaacttcccgattcctcgttaggggagcaaaatgggcatgctgatcatctcgatgaggtttccactgccaaccatcctcctacacccattgaagagaatggcaccgagtgctcacctctggtatctggctgcagtaacagtcctcttcatgggactttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0227C07-I7LB9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0227C07.1" temp_strand="-" temp_description="C07HBa0227C07.1  AC232630.1 htgs_phase:2 submitted_to_sgn_as:gi|205277506|gb|AC232630.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0227C07, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="67286" stop="64990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66986" g_stop="66945" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66944" i_stop="66747" i_length="198">
            <donor d_prob="0.116" d_score="1.00"/>
            <acceptor a_prob="0.691" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66746" g_stop="66589" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="200" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66588" i_stop="66470" i_length="119">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66469" g_stop="66418" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="252" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66417" i_stop="66282" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66281" g_stop="66199" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="335" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66198" i_stop="65926" i_length="273">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65925" g_stop="65832" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="429" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65831" i_stop="65668" i_length="164">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.671" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65667" g_stop="65290" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="807" r_length="378" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0227C07.1" gen_strand="-" ref_id="SGN-U331920" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0227C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66986" e_stop="66945"/>
          <exon e_start="66746" e_stop="66589"/>
          <exon e_start="66469" e_stop="66418"/>
          <exon e_start="66281" e_stop="66199"/>
          <exon e_start="65925" e_stop="65832"/>
          <exon e_start="65667" e_stop="65290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCAAGTCTTGTTTGAAGGTTTTCTCACATAGTGATTATGGTATGCCTATTGAACCGATCTCTTATCTTTTCACCCTTCCCACACCCATTGGGGAGGGGTTGGTGGGTTAAGTCTCATAAATATGAATACCAGTGTTTGTTAAGAATTTCAGAAAGAACTATAGTGACGTAGAAATTACATACACTGGAACTTTTTCACTAATTAACTGATTGCAGTGTGATCCTTTCTTTGCCACAGTAACCTGCATCCAGTTTAACCCTGTTGATGATAGATACTTTATCAGTGGGTCCCTAGATGCTAAGGTTCGCATATGGAGCATTCCAGAGAGACAAGTTGTCGATTGGAATGATCTGCATGAGATGGTCACAGCTGCTTGCTATACACCAGATGGTCAGGTGAGACTAGTTAACATAGTGCTCATTGTGATGTTAGGTTAAACCATTGGTAGACGAGAAACACTTAGGATTTGGATCCTTCCAATTTTAGTTGCTAACTTTTTAATTGTTGTTTGAAGGGTGCATTTGTTGGTTCATACAAGGGGAATTGTCGTCAATACAACACATCAGGTTTTGATTTGTTGTCCCTCATGTTTCCTTGCCCCCCCCCCCCCCCCCCTCCTCTTTCCTCCTCCTCCTCCTCATTCTTCTCTTGAGGTAAAACAAGCACTCAGCATGCTGATATTTTGTGCCTCTCTATTTTCAGACAATAAATTGCAGCATAAAGCTCAACTCAATCTTCAGAATAAGAAGAAGAAGGCTCACCAGAAGAAAATTACTGGTTTCCAGGTAATTCTTAATTGATTGTTGACCTGTTAGATGCATTTGTTTTTGCCTCAGTTGATCTTAGTCCTCTTTTTTCTTCAAGTATAGCTGTTCAAAAACTTAAAAGTACTTTCCCCTTCCCTAGTTAACCGGAGGTTTGGGGCATAATGTGTGTATTTACGCATATCTTTTTAAATAACCTTAATCTACAACAAATGGAATAATAGTTGTTGTCTGGATAAATTTACCTTGCAACCTTCATGAATTCCTTTGTTGCTGATAAATTTAAATGTACAGTTTGTTCCAGGGAGTACATCAGAAGTGCTTATAACATCTGCAGATTCGAGAATTCGGGTGGTTGATGGTGTTGATCTTGTCCACAAGTTCAAAGGTACATTGGAACTGCTAATTATCTTATAAAGCTGGTCAGTTACTGAATGAAGTTTATAGTTAGTTCCACTTGACCTTTTGAGATGTTCGTCTTCCTGTACTATTCTCAGCTTTAATTTTTTTTCCTGCTATATCCTAGTATTGAGTTAGCACCAACTATGACAGGTTTTCGCAATACAAACAGCCAAATCTCAGCCTCTGTGACTGCTGATGGTAGATATGTGGTCTGTGCCAGTGAGGACTCACATGTCTATATCTGGAAACATGAAGGTGATTCTCGGCCAAGCAGGAATAGAGGCGTTACCATTACACAGTCGTACGAGCATTTCCATTGTCAAGATGTTTCAGTGGCCATACCTTGGCCTGGCTTATCTGATAATCTGAAACTTCCCGATTCCTCGTTAGGGGAGCAAAATGGGCATGCTGATCATCTCGATGAGGTTTCCACTGCCAACCATCCTCCTACACCCATTGAAGAGAATGGCACCGAGTGCTCACCTCTGGTATCTGGCTGCAGTAACAGTCCTCTTCATGGGACTTTAA</genome_strand>
        <mrna_strand>CTAGCAAGTCTTGTTTGAAGGTTTTCTCACATAGTGATTATG......................................................................................................................................................................................................TAACCTGCATCCAGTTTAACCCTGTTGATGATAGATACTTTATCAGTGGGTCCCTAGATGCTAAGGTTCGCATATGGAGCATTCCAGAGAGACAAGTTGTCGATTGGAATGATCTGCATGAGATGGTCACAGCTGCTTGCTATACACCAGATGGTCAG.......................................................................................................................GGTGCATTTGTTGGTTCATACAAGGGGAATTGTCGTCAATACAACACATCAG........................................................................................................................................ACAATAAATTGCAGCATAAAGCTCAACTCAATCTTCAGAATAAGAAGAAGAAGGCTCACCAGAAGAAAATTACTGGTTTCCAG.................................................................................................................................................................................................................................................................................TTTGTTCCAGGGAGTACATCAGAAGTGCTTATAACATCTGCAGATTCGAGAATTCGGGTGGTTGATGGTGTTGATCTTGTCCACAAGTTCAAAG....................................................................................................................................................................GTTTTCGCAATACAAACAGCCAAATCTCAGCCTCTGTGACTGCTGATGGTAGATATGTGGTCTGTGCCAGTGAGGACTCACATGTCTATATCTGGAAACATGAAGGTGATTCTCGGCCAAGCAGGAATAGAGGCGTTACCATTACACAGTCGTACGAGCATTTCCATTGTCAAGATGTTTCAGTGGCCATACCTTGGCCTGGCTTATCTGATAATCTGAAACTTCCCGATTCCTCGTTAGGGGAGCAAAATGGGCATGCTGATCATCTCGATGAGGTTTCCACTGCCAACCATCCTCCTACACCCATTGAAGAGAATGGCACCGAGTGCTCACCTCTGGTATCTGGCTGCAGTAACAGTCCTCTTCATGGGACTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/nudTlEdkFl" ref_id="SGN-U345099" ref_strand="+" ref_description="SGN-U345099        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | COP1-interacting protein 7 (CIP7), identical to COP1-Interacting Protein 7 (CIP7) GI:3327868 from (Arabidopsis thaliana) | chr4:13718685-13722984 FORWARD | Aliases: F27G19.30, F27G19_30(evalue: 2e-05, score=38.9)">
      <seq>cccgattcaattgtggttcgagcccattcggttgataatgtgtctgattatcaccaacagacagacattttcatggtctcagacatcgtcggagctgaacaagttaagcacagcatgcctaatcacgcggaagagaagcttgatccttctgatgcatgtgaaccaaatgatcttttcatggttcttggaagagattcagctgctgagcaagtttcagcctctcgggatactgaaatgtatgacgaaaatgatgtcttcctgtctgaaactcttaagagtcacactgatatcagacctgcttctgctgagacaaagcttcaaacaaaaggcgaagggaccaacaaacaggatcggtagggaccttgggcgaaaggcagttattaaagaaccaaaatctaaaacttccgtaaccggatctcttggaaggaccaaatctgatacatcatcaagaatcaagaaatcaccttccacatttcagaagagcaaagctgacaaggacgaggagagtcgaaagaaattacaacaatcattattgcaacgtcaaaagagaatcgcagaaagaagtggtgccactggtttaaccaaaccaacatcacggaagaatccagccacatcttcaacaattgagaaatcaaaacctgaagcaaccaatagattaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0227C07-I7LB9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0227C07.1" temp_strand="-" temp_description="C07HBa0227C07.1  AC232630.1 htgs_phase:2 submitted_to_sgn_as:gi|205277506|gb|AC232630.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0227C07, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="74913" stop="73558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74616" g_stop="74122" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74121" i_stop="74022" i_length="100">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74021" g_stop="73858" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="660" r_length="164" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0227C07.1" gen_strand="-" ref_id="SGN-U345099" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0227C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74616" e_stop="74122"/>
          <exon e_start="74021" e_stop="73858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATTCCATTGTGGTTCGAGCCCATTCGGTTGATAATGTGTCTGATTATGACCAACAGACAGACATTTTCATGGTCTTAGACATCGTCGGAGCTGAACAAGTTAAGCACAGCATGCCTAATCACGCGGAAGAGAAGCTTGATCCTTCTGATGCATGTGAACCAAATGATCTTTTCATGGTTCTTGGAAGAGATTCAGCTGCTGAGCAAGTTTCAGCCTCTCGGGATACTGAAATGTATGACGAAAATGATGTCTTCCTGTCTGAAACTCTTAAGAGTCACACTGATATCAGACCTGCTTCTGCTGAGACAAAGCTTCAAACAAAAGGCGAAGGGACCAACAAA-AGGATCGGTAGGGACCTTGGGCGAAAGGCAGTTATTAAAGAACCAAAATCTAAAACTTCCGTAACCGGATCTCTTGGAAGGACCAAATCTGATACATCATCAAGAATCAAGAAATCACCTTCCACATTTCAGAAGAGCAAAGCTGACAAGGTATGAACAATCTTGTACTAAATATATACTTTTTCCTGTTCTTTTCACCTGTCATTGTTATTATTATGATAATTTAATTCTCTCTCAACGTTACTAACAGGACGAGGAGAGTCGAAAGAAATTAGAACAATCATTATTGCAACGTCAAAAGAGAATCGCAGAAAGAAGTGGTGCCACTGGTTTAACCAAACCAACATCAAGGAAGAATCCAGCCACATCTTCAACAATTGAGAAATCAAAACCTGAGGCAACCAATAGATTACA</genome_strand>
        <mrna_strand>CCCGATTCAATTGTGGTTCGAGCCCATTCGGTTGATAATGTGTCTGATTATCACCAACAGACAGACATTTTCATGGTCTCAGACATCGTCGGAGCTGAACAAGTTAAGCACAGCATGCCTAATCACGCGGAAGAGAAGCTTGATCCTTCTGATGCATGTGAACCAAATGATCTTTTCATGGTTCTTGGAAGAGATTCAGCTGCTGAGCAAGTTTCAGCCTCTCGGGATACTGAAATGTATGACGAAAATGATGTCTTCCTGTCTGAAACTCTTAAGAGTCACACTGATATCAGACCTGCTTCTGCTGAGACAAAGCTTCAAACAAAAGGCGAAGGGACCAACAAACAGGATCGGTAGGGACCTTGGGCGAAAGGCAGTTATTAAAGAACCAAAATCTAAAACTTCCGTAACCGGATCTCTTGGAAGGACCAAATCTGATACATCATCAAGAATCAAGAAATCACCTTCCACATTTCAGAAGAGCAAAGCTGACAAG....................................................................................................GACGAGGAGAGTCGAAAGAAATTACAACAATCATTATTGCAACGTCAAAAGAGAATCGCAGAAAGAAGTGGTGCCACTGGTTTAACCAAACCAACATCACGGAAGAATCCAGCCACATCTTCAACAATTGAGAAATCAAAACCTGAAGCAACCAATAGATTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/nudTlEdkFl" ref_id="SGN-U342756" ref_strand="+" ref_description="SGN-U342756        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G61820.1 | Symbol: None | glycosyl hydrolase family 1 protein, contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to beta-mannosidase enzyme (GI:17226270) (Lycopersicon esculentum) | chr1:22838743-22842280 FORWARD | Aliases: F8K4.3, F8K4_3 (evalue: 3e-12, score=69.3) genbank/nr: beta-galactosidase(evalue: 1e-24, score=117)">
      <seq>aataaaccactatggcactctgtatgcgaaagattgcattaattctagctgcgtttgctccaattctagttgcatcgcgggtggagaccaccctatccatggctatctcattactctaggagagaaagatggcgtttctattggagaaccggtatgaagttgtttttgtaatccttaaactctgctttctctcgtcatgatacgcgtactgtcctgttctccatagacaggaatgtctcgatttttcgtggttccaaatggaatggaggagattgttgactatatgaagaagagataccataataaacctatgtttgttactgaaaatggctacgcctctctgaatcctactacagcacaagcggatgagctacaacatgatactaagcgagttgaattccataagtcatatcttgcatcattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0227C07-I7LB9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0227C07.1" temp_strand="-" temp_description="C07HBa0227C07.1  AC232630.1 htgs_phase:2 submitted_to_sgn_as:gi|205277506|gb|AC232630.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0227C07, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="97197" stop="96359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97161" g_stop="96833" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96832" i_stop="96755" i_length="78">
            <donor d_prob="0.404" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96754" g_stop="96659" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="425" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0227C07.1" gen_strand="-" ref_id="SGN-U342756" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0227C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97161" e_stop="96833"/>
          <exon e_start="96754" e_stop="96659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAACCACTATGGCACTCTGTATGCGAAAGATTGCATTAATTCTAGCTGCGTTTGCTCCAATTCTAGTTGCATCGCGGGTGGAGACCACCCTATCCATGGCTATCTCATTACTCTAGGAGAGAAAGATGGCGTTTCTATTGGAGAACCGGTATGAAGTTGTTTTTGTAATCCTTAAACTCTGCTTTCTCTCGTCATGATACGCGTACTGTCCTGTTCTCCATAGACAGGAATGTCTCGATTTTTCGTGGTTCCAAATGGAATGGAGGAGATTGTTGACTATATGAAGAAGAGATACCATAATAAACCTATGTTTGTTACTGAAAATGGTAAACCATCGTAGCCTCGTTTACCTTGCATATTCATAATTTTGTGGGGAAAAAACTGATCTATGAGGTACATTGCAGGCTACGCCTCTCTGAATCCTACTACAGCACAAGCGGATGAGCTACAACATGATACTAAGCGAGTTGAATTCCATAAGTCATATCTTGCATCATTAG</genome_strand>
        <mrna_strand>AATAAACCACTATGGCACTCTGTATGCGAAAGATTGCATTAATTCTAGCTGCGTTTGCTCCAATTCTAGTTGCATCGCGGGTGGAGACCACCCTATCCATGGCTATCTCATTACTCTAGGAGAGAAAGATGGCGTTTCTATTGGAGAACCGGTATGAAGTTGTTTTTGTAATCCTTAAACTCTGCTTTCTCTCGTCATGATACGCGTACTGTCCTGTTCTCCATAGACAGGAATGTCTCGATTTTTCGTGGTTCCAAATGGAATGGAGGAGATTGTTGACTATATGAAGAAGAGATACCATAATAAACCTATGTTTGTTACTGAAAATG..............................................................................GCTACGCCTCTCTGAATCCTACTACAGCACAAGCGGATGAGCTACAACATGATACTAAGCGAGTTGAATTCCATAAGTCATATCTTGCATCATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>12</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="3971" PGL_stop="5733"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3971" e_stop="4040"/>
            <exon e_start="4465" e_stop="4648"/>
            <exon e_start="5272" e_stop="5345"/>
            <exon e_start="5426" e_stop="5539"/>
            <exon e_start="5619" e_stop="5733"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.667" acc_prob="0.758" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.991"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3971" e_stop="4040" e_length="70"/>
          </exon>
          <intron i_serial="1" don_prob="0.667" acc_prob="0.758">
            <gDNA_intron_boundary i_start="4041" i_stop="4464" i_length="424"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4465" e_stop="4648" e_length="184"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="4649" i_stop="5271" i_length="623"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5272" e_stop="5345" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.968">
            <gDNA_intron_boundary i_start="5346" i_stop="5425" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="5426" e_stop="5539" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5540" i_stop="5618" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5619" e_stop="5733" e_length="115"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3971" stop="4040"/>
              <exon start="4465" stop="4648"/>
              <exon start="5272" stop="5345"/>
              <exon start="5426" stop="5539"/>
              <exon start="5619" stop="5733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345835" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTGTTGAGGATATCGCAGTTGATAAGTCTATCCATGGCTTAATTAACTCTCGATCTTTGGTCTTAAAG : AGATATGTAGCTGATGTTGGCAAGTCATGGGGAGTGTTGATTGTTTGTGGAGGAATTTTGCCAGTTTTTCTATCAGTGATATGGCTTCTGATGATTCGTCACTTTGTGGCTGCAATGCCTTGGATAACTGTCGTCCTCTTTAATGGCCTCATAGTTTCAGTCACAATGTTCTACTATCTAAAAG : CTGGATGGATAGGGAACGACCCTATCTCCCCCATCATTGGTGAACATGATCCGTATTATCATGTATCTGCAAGG : GAAATAAGTCATCTCCATGCTGCTGCTGTTATCATGACTGCTGTAATGATTATTTCGGTCTTGTCATCCATCGCTATAGTGCGTCGTATACTTATGGCTACTTCAGTCCTGAAG : GTAGCTGCTAAGGTCATTGGAGAAGTACAAGCATTAATAATTTTCCCCATCATTCCGTATGCTATCCTAGCAATCTTCTACATGTTTTGGTTTTCAGCTGCTCTTCATCTTTTTA</gDNA_template>
            <first_frame> H  C  *  G  Y  R  S  *  *  V  Y  P  W  L  N  *  L  S  I  F  G  L  K   : E  I  C  S  *  C  W  Q  V  M  G  S  V  D  C  L  W  R  N  F  A  S  F  S  I  S  D  M  A  S  D  D  S  S  L  C  G  C  N  A  L  D  N  C  R  P  L  *  W  P  H  S  F  S  H  N  V  L  L  S  K  S :   W  M  D  R  E  R  P  Y  L  P  H  H  W  *  T  *  S  V  L  S  C  I  C  K   : G  N  K  S  S  P  C  C  C  C  Y  H  D  C  C  N  D  Y  F  G  L  V  I  H  R  Y  S  A  S  Y  T  Y  G  Y  F  S  P  E   : G  S  C  *  G  H  W  R  S  T  S  I  N  N  F  P  H  H  S  V  C  Y  P  S  N  L  L  H  V  L  V  F  S  C  S  S  S  F   </first_frame>
            <second_frame>  I  V  E  D  I  A  V  D  K  S  I  H  G  L  I  N  S  R  S  L  V  L  K  :  R  Y  V  A  D  V  G  K  S  W  G  V  L  I  V  C  G  G  I  L  P  V  F  L  S  V  I  W  L  L  M  I  R  H  F  V  A  A  M  P  W  I  T  V  V  L  F  N  G  L  I  V  S  V  T  M  F  Y  Y  L  K   : A  G  W  I  G  N  D  P  I  S  P  I  I  G  E  H  D  P  Y  Y  H  V  S  A  R  :  E  I  S  H  L  H  A  A  A  V  I  M  T  A  V  M  I  I  S  V  L  S  S  I  A  I  V  R  R  I  L  M  A  T  S  V  L  K  :  V  A  A  K  V  I  G  E  V  Q  A  L  I  I  F  P  I  I  P  Y  A  I  L  A  I  F  Y  M  F  W  F  S  A  A  L  H  L  F  </second_frame>
            <third_frame>   L  L  R  I  S  Q  L  I  S  L  S  M  A  *  L  T  L  D  L  W  S  *  R :   D  M  *  L  M  L  A  S  H  G  E  C  *  L  F  V  E  E  F  C  Q  F  F  Y  Q  *  Y  G  F  *  *  F  V  T  L  W  L  Q  C  L  G  *  L  S  S  S  L  M  A  S  *  F  Q  S  Q  C  S  T  I  *  K  :  L  D  G  *  G  T  T  L  S  P  P  S  L  V  N  M  I  R  I  I  M  Y  L  Q  G :   K  *  V  I  S  M  L  L  L  L  S  *  L  L  *  *  L  F  R  S  C  H  P  S  L  *  C  V  V  Y  L  W  L  L  Q  S  *  R :   *  L  L  R  S  L  E  K  Y  K  H  *  *  F  S  P  S  F  R  M  L  S  *  Q  S  S  T  C  F  G  F  Q  L  L  F  I  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0227C07.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3972" stop="4040"/>
                    <exon start="4465" stop="4648"/>
                    <exon start="5272" stop="5345"/>
                    <exon start="5426" stop="5539"/>
                    <exon start="5619" stop="5732"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVEDIAVDKSIHGLINSRSLVLKRYVADVGKSWGVLIVCGGILPVFLSVIWLLMIRHFVAAMPWITVVLFNGLIVSVTMFYYLKAGWIGNDPISPIIGEHDPYYHVSAREISHLHAAAVIMTAVMIISVLSSIAIVRRILMATSVLKVAAKVIGEVQALIIFPIIPYAILAIFYMFWFSAALHLF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="17502" PGL_stop="8057"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17502" e_stop="17311"/>
            <exon e_start="16298" e_stop="15663"/>
            <exon e_start="15271" e_stop="15246"/>
            <exon e_start="14408" e_stop="14331"/>
            <exon e_start="12705" e_stop="12635"/>
            <exon e_start="12504" e_stop="12248"/>
            <exon e_start="11587" e_stop="11502"/>
            <exon e_start="11365" e_stop="11309"/>
            <exon e_start="10766" e_stop="10699"/>
            <exon e_start="10606" e_stop="10500"/>
            <exon e_start="10424" e_stop="10357"/>
            <exon e_start="8460" e_stop="8057"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.992" e_score="0.995"/>
          <exon-intron don_prob="0.984" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.842" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.706" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.616" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="17502" e_stop="17311" e_length="192"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.992">
            <gDNA_intron_boundary i_start="17310" i_stop="16299" i_length="1012"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16298" e_stop="15663" e_length="636"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.995">
            <gDNA_intron_boundary i_start="15662" i_stop="15272" i_length="391"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15271" e_stop="15246" e_length="26"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.960">
            <gDNA_intron_boundary i_start="15245" i_stop="14409" i_length="837"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14408" e_stop="14331" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.952" acc_prob="0.974">
            <gDNA_intron_boundary i_start="14330" i_stop="12706" i_length="1625"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12705" e_stop="12635" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.842" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12634" i_stop="12505" i_length="130"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="12504" e_stop="12248" e_length="257"/>
          </exon>
          <intron i_serial="6" don_prob="0.976" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12247" i_stop="11588" i_length="660"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="11587" e_stop="11502" e_length="86"/>
          </exon>
          <intron i_serial="7" don_prob="0.706" acc_prob="0.997">
            <gDNA_intron_boundary i_start="11501" i_stop="11366" i_length="136"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="11365" e_stop="11309" e_length="57"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="11308" i_stop="10767" i_length="542"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="10766" e_stop="10699" e_length="68"/>
          </exon>
          <intron i_serial="9" don_prob="0.965" acc_prob="0.000">
            <gDNA_intron_boundary i_start="10698" i_stop="10607" i_length="92"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="10606" e_stop="10500" e_length="107"/>
          </exon>
          <intron i_serial="10" don_prob="0.616" acc_prob="0.941">
            <gDNA_intron_boundary i_start="10499" i_stop="10425" i_length="75"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="10424" e_stop="10357" e_length="68"/>
          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.000">
            <gDNA_intron_boundary i_start="10356" i_stop="8461" i_length="1896"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="8460" e_stop="8057" e_length="404"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17502" stop="17311"/>
              <exon start="16298" stop="15663"/>
              <exon start="15271" stop="15246"/>
              <exon start="14408" stop="14331"/>
              <exon start="12705" stop="12635"/>
              <exon start="12504" stop="12248"/>
              <exon start="11587" stop="11502"/>
              <exon start="11365" stop="11309"/>
              <exon start="10766" stop="10699"/>
              <exon start="10606" stop="10500"/>
              <exon start="10424" stop="10357"/>
              <exon start="8460" stop="8057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320110" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTCTCTCTCCTCACTCTTTCTTCTTTTCTCCTTCCTTCATAGTTCCTTCCTTCCTTCTCCGAAAAGCTAGCGGTTGAGTCTGAAGAGTGAACAATATATTGTTCGAATGGAGAGAGCCGATAAAAAACTTCATTAAAGCTACTTCGTTTGGCTCTCATTCTCTATCTATCATCGGCCGGCAAGTTTATACA : CGGTTCTTATTTCATCTTATACTGCAAGGATGAAGATGGAGGCACCTCCTTCGACAATCTTGTTTACTGATGATGATAGCAAGAACCTGGAGCAATTGCTTGATGTCTTTGGATCTGTTGTCTCTCTCGATGACATCGCTGCAGCTTATTGTAAAGCAGGTCGGGATCCAATTATTGCAGGTGATATACTTGGAGATCAGAAACCTAGCAGCTCCGGAACTACTAACTCTGAGATGGAAGAAAACATAGAGGATTCCGTGACTCTGACTTCTGAATTTGAGGAAGTAGGGGACTCTATGATATCGACATCTGCATCTGTATCTGAGATTGATGCCAAGAGAGTTGGTCCCAGGTCATCAAAGCAAAAAAAGTTATCAGTGTCTATGGGGACTGTCTCAAGCATGATCCCAAAAGACTATCTGACGAATAGGCCACTAATTACAGAAACTTCTACGAGAATCAAGCCACTGAAATTAAGCGCAGATGATTTCTTAACCCCAGAGCTAAGGGAGGAGAAAGCTCCATTAGGTGCTGCAGCTATGAGTGAAACCCTGCCCAGCAGTGTAGAGGAGTTCCTCTTCAACATGCTGGGAAGCGGATTTTCTCTTGACAGGAGTGTAATTGGAGATGTTGTTG : GTCAATGCAGCTACGATCTGAACAAG : AGTATGGATAAGCTGCTAGATATGTCCGCATCAACTTTGGGAAAGAGCGATGATATTATAAATATAGGTGTCAAGAAA : TCTGTGGAGAGTTCAGATTTTGCATCAGTTGTATCAAAAGAGACATCTTCAATGACAGATCCAGCCATCCG : TTCCAAAGCAAATGAGAAGACTAAAAATGGGCTCAAGTTATCTATGAAGGAGCAGGAAAGGTATGAGATTCAAAAGGAAGTTCTGCATGCATTGTTTGATGTACCTGCAGCTTCAAGATATGATAATGTGGATGAAGTGATTCGTCCGGTGAAGGAAGTTGGGAAGTCTAGTAGATTAAATCTCGTTGTAGATAAACCATTACAGGAGACTTTAGAACGCCAGATTCTTATCAGGACACCACAAAGTGATGCAAAAA : ATGGTGAGGAGGATGAAGAAAGCTACGAAGTTCTTCGGAAAGCTGTAAAGGAGTACTGGATTACAATGAAAGAGTACTATAATGCA : GCTTCTGAAGCATTCTCCAAAGGAGATCATGATCAAGCACGCAAATTCCTGGAAGAG : GGACAATTTTTCATGACGAAGGCGCAAGTGACGGATGAAAAATCCTCTCAAAAGCTTCTTGAAACCAG : TTGCAGTTCCAGCAAAGAAATTGTGACACTCGACCTTCACGATTTGGAGCCAAAGGATGCAGTGCGCTTACTCAAACTTCAGTTGACTTCTCTTTGTGGATTCTCGT : CTATTCAATATCTCAAAATCTTAGTTGGGATCACTGCTGAAGAAGCTAAAGGTCCCCGGAAGCGTCTG : GTACTGAAATTTTTGGAGAGGGATTCCATACCATGGACGGAGGAAGAAAATGGCACAGTGCTTGTGATAAGAGTGGATGTGATAGATCCGCGGAAAATGACTTTTGCTAAAAAATCAACTGCCAGAGTCCGATAAATACATCACTGAATAGATCATTGTTCTAAAGCATGAATTTTGTATCAACTTGGATCTTGTGAAATGCTTTGATGCTTCTGCATTTTTTATAACCACAAGGAACAACCTTGGCCTTGCTACCAAAAAGACTTGTATTTGATTCTTTAATTTCTCTTCTTAATTCTCAAGCCGGTGAGCAAGTTTTGCTTAGGCACCGATTTACTTGGTAAAGACTAATAGCAAATTGATTTCAGAAGTACATTATATGAAACATGCAATGCTTTGACTTA</gDNA_template>
            <first_frame> C  L  S  P  H  S  F  F  F  S  P  S  F  I  V  P  S  F  L  L  R  K  A  S  G  *  V  *  R  V  N  N  I  L  F  E  W  R  E  P  I  K  N  F  I  K  A  T  S  F  G  S  H  S  L  S  I  I  G  R  Q  V  Y  T  :  R  F  L  F  H  L  I  L  Q  G  *  R  W  R  H  L  L  R  Q  S  C  L  L  M  M  I  A  R  T  W  S  N  C  L  M  S  L  D  L  L  S  L  S  M  T  S  L  Q  L  I  V  K  Q  V  G  I  Q  L  L  Q  V  I  Y  L  E  I  R  N  L  A  A  P  E  L  L  T  L  R  W  K  K  T  *  R  I  P  *  L  *  L  L  N  L  R  K  *  G  T  L  *  Y  R  H  L  H  L  Y  L  R  L  M  P  R  E  L  V  P  G  H  Q  S  K  K  S  Y  Q  C  L  W  G  L  S  Q  A  *  S  Q  K  T  I  *  R  I  G  H  *  L  Q  K  L  L  R  E  S  S  H  *  N  *  A  Q  M  I  S  *  P  Q  S  *  G  R  R  K  L  H  *  V  L  Q  L  *  V  K  P  C  P  A  V  *  R  S  S  S  S  T  C  W  E  A  D  F  L  L  T  G  V  *  L  E  M  L  L  :  V  N  A  A  T  I  *  T  R :   V  W  I  S  C  *  I  C  P  H  Q  L  W  E  R  A  M  I  L  *  I  *  V  S  R  N :   L  W  R  V  Q  I  L  H  Q  L  Y  Q  K  R  H  L  Q  *  Q  I  Q  P  S   : V  P  K  Q  M  R  R  L  K  M  G  S  S  Y  L  *  R  S  R  K  G  M  R  F  K  R  K  F  C  M  H  C  L  M  Y  L  Q  L  Q  D  M  I  M  W  M  K  *  F  V  R  *  R  K  L  G  S  L  V  D  *  I  S  L  *  I  N  H  Y  R  R  L  *  N  A  R  F  L  S  G  H  H  K  V  M  Q  K  :  M  V  R  R  M  K  K  A  T  K  F  F  G  K  L  *  R  S  T  G  L  Q  *  K  S  T  I  M  Q :   L  L  K  H  S  P  K  E  I  M  I  K  H  A  N  S  W  K  R :   D  N  F  S  *  R  R  R  K  *  R  M  K  N  P  L  K  S  F  L  K  P   : V  A  V  P  A  K  K  L  *  H  S  T  F  T  I  W  S  Q  R  M  Q  C  A  Y  S  N  F  S  *  L  L  F  V  D  S  R  :  L  F  N  I  S  K  S  *  L  G  S  L  L  K  K  L  K  V  P  G  S  V  W :   Y  *  N  F  W  R  G  I  P  Y  H  G  R  R  K  K  M  A  Q  C  L  *  *  E  W  M  *  *  I  R  G  K  *  L  L  L  K  N  Q  L  P  E  S  D  K  Y  I  T  E  *  I  I  V  L  K  H  E  F  C  I  N  L  D  L  V  K  C  F  D  A  S  A  F  F  I  T  T  R  N  N  L  G  L  A  T  K  K  T  C  I  *  F  F  N  F  S  S  *  F  S  S  R  *  A  S  F  A  *  A  P  I  Y  L  V  K  T  N  S  K  L  I  S  E  V  H  Y  M  K  H  A  M  L  *  L  </first_frame>
            <second_frame>  V  S  L  L  T  L  S  S  F  L  L  P  S  *  F  L  P  S  F  S  E  K  L  A  V  E  S  E  E  *  T  I  Y  C  S  N  G  E  S  R  *  K  T  S  L  K  L  L  R  L  A  L  I  L  Y  L  S  S  A  G  K  F  I  H :   G  S  Y  F  I  L  Y  C  K  D  E  D  G  G  T  S  F  D  N  L  V  Y  *  *  *  *  Q  E  P  G  A  I  A  *  C  L  W  I  C  C  L  S  R  *  H  R  C  S  L  L  *  S  R  S  G  S  N  Y  C  R  *  Y  T  W  R  S  E  T  *  Q  L  R  N  Y  *  L  *  D  G  R  K  H  R  G  F  R  D  S  D  F  *  I  *  G  S  R  G  L  Y  D  I  D  I  C  I  C  I  *  D  *  C  Q  E  S  W  S  Q  V  I  K  A  K  K  V  I  S  V  Y  G  D  C  L  K  H  D  P  K  R  L  S  D  E  *  A  T  N  Y  R  N  F  Y  E  N  Q  A  T  E  I  K  R  R  *  F  L  N  P  R  A  K  G  G  E  S  S  I  R  C  C  S  Y  E  *  N  P  A  Q  Q  C  R  G  V  P  L  Q  H  A  G  K  R  I  F  S  *  Q  E  C  N  W  R  C  C  W :   S  M  Q  L  R  S  E  Q   : E  Y  G  *  A  A  R  Y  V  R  I  N  F  G  K  E  R  *  Y  Y  K  Y  R  C  Q  E   : I  C  G  E  F  R  F  C  I  S  C  I  K  R  D  I  F  N  D  R  S  S  H  P  :  F  Q  S  K  *  E  D  *  K  W  A  Q  V  I  Y  E  G  A  G  K  V  *  D  S  K  G  S  S  A  C  I  V  *  C  T  C  S  F  K  I  *  *  C  G  *  S  D  S  S  G  E  G  S  W  E  V  *  *  I  K  S  R  C  R  *  T  I  T  G  D  F  R  T  P  D  S  Y  Q  D  T  T  K  *  C  K  K :   W  *  G  G  *  R  K  L  R  S  S  S  E  S  C  K  G  V  L  D  Y  N  E  R  V  L  *  C   : S  F  *  S  I  L  Q  R  R  S  *  S  S  T  Q  I  P  G  R   : G  T  I  F  H  D  E  G  A  S  D  G  *  K  I  L  S  K  A  S  *  N  Q  :  L  Q  F  Q  Q  R  N  C  D  T  R  P  S  R  F  G  A  K  G  C  S  A  L  T  Q  T  S  V  D  F  S  L  W  I  L  V :   Y  S  I  S  Q  N  L  S  W  D  H  C  *  R  S  *  R  S  P  E  A  S   : G  T  E  I  F  G  E  G  F  H  T  M  D  G  G  R  K  W  H  S  A  C  D  K  S  G  C  D  R  S  A  E  N  D  F  C  *  K  I  N  C  Q  S  P  I  N  T  S  L  N  R  S  L  F  *  S  M  N  F  V  S  T  W  I  L  *  N  A  L  M  L  L  H  F  L  *  P  Q  G  T  T  L  A  L  L  P  K  R  L  V  F  D  S  L  I  S  L  L  N  S  Q  A  G  E  Q  V  L  L  R  H  R  F  T  W  *  R  L  I  A  N  *  F  Q  K  Y  I  I  *  N  M  Q  C  F  D  L </second_frame>
            <third_frame>   S  L  S  S  L  F  L  L  F  S  F  L  H  S  S  F  L  P  S  P  K  S  *  R  L  S  L  K  S  E  Q  Y  I  V  R  M  E  R  A  D  K  K  L  H  *  S  Y  F  V  W  L  S  F  S  I  Y  H  R  P  A  S  L  Y   : T  V  L  I  S  S  Y  T  A  R  M  K  M  E  A  P  P  S  T  I  L  F  T  D  D  D  S  K  N  L  E  Q  L  L  D  V  F  G  S  V  V  S  L  D  D  I  A  A  A  Y  C  K  A  G  R  D  P  I  I  A  G  D  I  L  G  D  Q  K  P  S  S  S  G  T  T  N  S  E  M  E  E  N  I  E  D  S  V  T  L  T  S  E  F  E  E  V  G  D  S  M  I  S  T  S  A  S  V  S  E  I  D  A  K  R  V  G  P  R  S  S  K  Q  K  K  L  S  V  S  M  G  T  V  S  S  M  I  P  K  D  Y  L  T  N  R  P  L  I  T  E  T  S  T  R  I  K  P  L  K  L  S  A  D  D  F  L  T  P  E  L  R  E  E  K  A  P  L  G  A  A  A  M  S  E  T  L  P  S  S  V  E  E  F  L  F  N  M  L  G  S  G  F  S  L  D  R  S  V  I  G  D  V  V   : G  Q  C  S  Y  D  L  N  K  :  S  M  D  K  L  L  D  M  S  A  S  T  L  G  K  S  D  D  I  I  N  I  G  V  K  K  :  S  V  E  S  S  D  F  A  S  V  V  S  K  E  T  S  S  M  T  D  P  A  I  R :   S  K  A  N  E  K  T  K  N  G  L  K  L  S  M  K  E  Q  E  R  Y  E  I  Q  K  E  V  L  H  A  L  F  D  V  P  A  A  S  R  Y  D  N  V  D  E  V  I  R  P  V  K  E  V  G  K  S  S  R  L  N  L  V  V  D  K  P  L  Q  E  T  L  E  R  Q  I  L  I  R  T  P  Q  S  D  A  K   : N  G  E  E  D  E  E  S  Y  E  V  L  R  K  A  V  K  E  Y  W  I  T  M  K  E  Y  Y  N  A  :  A  S  E  A  F  S  K  G  D  H  D  Q  A  R  K  F  L  E  E  :  G  Q  F  F  M  T  K  A  Q  V  T  D  E  K  S  S  Q  K  L  L  E  T  S :   C  S  S  S  K  E  I  V  T  L  D  L  H  D  L  E  P  K  D  A  V  R  L  L  K  L  Q  L  T  S  L  C  G  F  S   : S  I  Q  Y  L  K  I  L  V  G  I  T  A  E  E  A  K  G  P  R  K  R  L  :  V  L  K  F  L  E  R  D  S  I  P  W  T  E  E  E  N  G  T  V  L  V  I  R  V  D  V  I  D  P  R  K  M  T  F  A  K  K  S  T  A  R  V  R  *  I  H  H  *  I  D  H  C  S  K  A  *  I  L  Y  Q  L  G  S  C  E  M  L  *  C  F  C  I  F  Y  N  H  K  E  Q  P  W  P  C  Y  Q  K  D  L  Y  L  I  L  *  F  L  F  L  I  L  K  P  V  S  K  F  C  L  G  T  D  L  L  G  K  D  *  *  Q  I  D  F  R  S  T  L  Y  E  T  C  N  A  L  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0227C07.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17365" stop="17311"/>
                    <exon start="16298" stop="15663"/>
                    <exon start="15271" stop="15246"/>
                    <exon start="14408" stop="14331"/>
                    <exon start="12705" stop="12635"/>
                    <exon start="12504" stop="12248"/>
                    <exon start="11587" stop="11502"/>
                    <exon start="11365" stop="11309"/>
                    <exon start="10766" stop="10699"/>
                    <exon start="10606" stop="10500"/>
                    <exon start="10424" stop="10357"/>
                    <exon start="8460" stop="8326"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1641</number_coding_nucleotides>
                  <number_encoded_amino_acids>547</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYFVWLSFSIYHRPASLYTVLISSYTARMKMEAPPSTILFTDDDSKNLEQLLDVFGSVVSLDDIAAAYCKAGRDPIIAGDILGDQKPSSSGTTNSEMEENIEDSVTLTSEFEEVGDSMISTSASVSEIDAKRVGPRSSKQKKLSVSMGTVSSMIPKDYLTNRPLITETSTRIKPLKLSADDFLTPELREEKAPLGAAAMSETLPSSVEEFLFNMLGSGFSLDRSVIGDVVGQCSYDLNKSMDKLLDMSASTLGKSDDIINIGVKKSVESSDFASVVSKETSSMTDPAIRSKANEKTKNGLKLSMKEQERYEIQKEVLHALFDVPAASRYDNVDEVIRPVKEVGKSSRLNLVVDKPLQETLERQILIRTPQSDAKNGEEDEESYEVLRKAVKEYWITMKEYYNAASEAFSKGDHDQARKFLEEGQFFMTKAQVTDEKSSQKLLETSCSSSKEIVTLDLHDLEPKDAVRLLKLQLTSLCGFSSIQYLKILVGITAEEAKGPRKRLVLKFLERDSIPWTEEENGTVLVIRVDVIDPRKMTFAKKSTARVR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="43057" PGL_stop="37323"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43057" e_stop="42732"/>
            <exon e_start="42387" e_stop="42254"/>
            <exon e_start="41988" e_stop="41859"/>
            <exon e_start="41742" e_stop="41585"/>
            <exon e_start="41088" e_stop="40987"/>
            <exon e_start="40826" e_stop="40722"/>
            <exon e_start="40560" e_stop="40432"/>
            <exon e_start="39841" e_stop="39701"/>
            <exon e_start="38738" e_stop="38638"/>
            <exon e_start="38361" e_stop="38304"/>
            <exon e_start="37815" e_stop="37323"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="0.999" e_score="0.997"/>
          <exon-intron don_prob="0.993" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="43057" e_stop="42732" e_length="326"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42731" i_stop="42388" i_length="344"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42387" e_stop="42254" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.976">
            <gDNA_intron_boundary i_start="42253" i_stop="41989" i_length="265"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41988" e_stop="41859" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.886" acc_prob="0.997">
            <gDNA_intron_boundary i_start="41858" i_stop="41743" i_length="116"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41742" e_stop="41585" e_length="158"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41584" i_stop="41089" i_length="496"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41088" e_stop="40987" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="0.927" acc_prob="0.990">
            <gDNA_intron_boundary i_start="40986" i_stop="40827" i_length="160"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="40826" e_stop="40722" e_length="105"/>
          </exon>
          <intron i_serial="6" don_prob="0.903" acc_prob="0.979">
            <gDNA_intron_boundary i_start="40721" i_stop="40561" i_length="161"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="40560" e_stop="40432" e_length="129"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.996">
            <gDNA_intron_boundary i_start="40431" i_stop="39842" i_length="590"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="39841" e_stop="39701" e_length="141"/>
          </exon>
          <intron i_serial="8" don_prob="0.978" acc_prob="0.944">
            <gDNA_intron_boundary i_start="39700" i_stop="38739" i_length="962"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="38738" e_stop="38638" e_length="101"/>
          </exon>
          <intron i_serial="9" don_prob="0.957" acc_prob="0.997">
            <gDNA_intron_boundary i_start="38637" i_stop="38362" i_length="276"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="38361" e_stop="38304" e_length="58"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="38303" i_stop="37816" i_length="488"/>
          </intron>
          <exon e_serial="11" e_score="0.998">
            <gDNA_exon_boundary e_start="37815" e_stop="37323" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43057" stop="42732"/>
              <exon start="42387" stop="42254"/>
              <exon start="41988" stop="41859"/>
              <exon start="41742" stop="41585"/>
              <exon start="41088" stop="40987"/>
              <exon start="40826" stop="40722"/>
              <exon start="40560" stop="40432"/>
              <exon start="39841" stop="39701"/>
              <exon start="38738" stop="38638"/>
              <exon start="38361" stop="38304"/>
              <exon start="37815" stop="37323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315903" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTGGAGTGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG : GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG : CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG : ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAG : GTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG : TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG : GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT : GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG : GTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG : GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAG : GGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAG</gDNA_template>
            <first_frame> C  G  V  Y  T  T  N  R  P  R  R  L  R  Y  *  R  *  S  P  I  P  K  P  *  F  C  S  S  Y  I  G  D  G  E  E  E  R  E  V  G  E  C  I  G  K  A  K  A  F  I  G  L  Q  *  G  C  Q  R  S  Q  K  W  P  *  R  R  Y  C  A  A  A  Q  D  V  Q  Y  Q  A  E  A  *  S  S  G  S  H  N  *  A  R  L  T  I  K  G  A  A  I  N  K  D  T  T  R  S  S  L  V  R :   *  Y  S  G  G  Q  P  E  G  T  G  V  F  *  R  R  A  P  N  S  A  F  Q  *  L  Q  C  Y  I  K  R  K  E  V  A  H  V  P  F  K  *  S  S  E   : A  S  K  S  S  S  A  *  Q  *  A  I  C  *  C  F  W  T  K  N  K  E  E  T  P  Q  T  Y  G  I  R  L  *  S  F  S  E  E  G  *  C  V  S  * :   *  F  *  R  Q  T  W  C  *  H  L  H  G  *  K  C  *  W  I  Q  R  S  C  *  A  H  N  V  *  E  R  T  K  *  T  N  L  E  *  A  L  Q  S  H  R  L  F  *  C  R  Y  S   : G  S  *  C  Q  R  P  L  W  Y  K  V  L  P  F  G  E  T  F  E  R  K  L  Q  A  Q  T  Y  G  P  F  A  *  *   : V  *  F  G  P  C  L  G  N  K  G  M  A  *  S  A  L  *  G  I  S  N  F  G  I  S  C  K  C  H  Q  V  L  W  K   : G  F  S  F  V  S  A  E  T  V  F  S  S  K  E  R  *  A  S  N  L  C  W  F  Y  R  L  S  Q  C  W  Q  V  I  S  Y  *  Y  I  A  H  K  E   : C  L  Q  G  G  S  Y  P  R  R  D  *  S  V  A  V  H  Y  T  H  K  E  D  I  L  D  *  L  S  W  C  S  L  S  E  S  *  F  R  N  R  Y  S  L  E  G  R   : G  T  S  D  K  P  T  *  C  F  *  T  H  *  R  S  V  E  S  R  *  E  G  A  S  *  K  S  L  *  D  R  E  L  :  G  *  R  V  *  L  S  S  T  A  M  Q  V  F  R  Q  T  S  E   : G  R  *  T  *  L  Q  Y  C  C  Q  D  G  S  P  *  L  A  K  R  Q  H  S  F  L  C  S  T  S  K  A  *  *  *  A  K  *  T  C  R  R  G  R  H  S  R  *  *  R  S  G  H  S  C  S  Q  S  Y  C  *  R  R  F  I  T  T  T  E  G  S  S  C  S  G  G  T  I  *  *  G  *  A  V  G  *  K  L  I  W  A  D  Y  P  L  D  L  Q  H  P  Q  F  W  N  R  V  F  V  Y  R  F  Y  N  L  L  V  G  S  I  A  F  P  E  F  S  S  P  R  R  D  *  Y  T  G  R  K  Y  R  Y  L  V  F  L  F  *  R  L  F  R  I  E  C  *  W  K  *  L  I  S  S  S  S  T  C  L   </first_frame>
            <second_frame>  V  E  C  I  L  Q  T  G  L  D  D  *  G  I  N  V  N  R  R  F  L  N  P  S  F  V  L  R  I  S  E  M  A  K  K  K  E  R  S  V  N  V  S  G  K  P  K  H  S  L  D  S  N  R  D  V  S  A  A  K  N  G  R  S  A  A  T  V  R  R  L  K  M  Y  N  T  R  P  K  R  N  P  Q  G  H  I  I  K  H  D  L  Q  S  K  E  L  P  S  T  R  I  Q  P  D  R  R  W  F   : G  N  T  R  V  V  N  Q  K  E  L  E  F  F  R  E  E  L  Q  T  R  L  S  S  N  Y  N  V  I  L  K  E  R  K  L  P  M  S  L  L  N  D  H  Q  K  :  Q  V  K  V  H  L  L  D  N  E  P  F  A  D  A  F  G  P  K  T  K  R  K  R  P  K  L  M  A  L  D  Y  E  A  L  V  K  K  V  D  V  S  H   : D  D  F  E  D  K  H  G  A  S  T  S  M  D  E  N  A  D  G  F  R  D  L  V  R  H  T  M  F  E  K  G  Q  S  K  R  I  W  S  E  L  Y  K  V  I  D  S  S  D  V  V  I  Q  :  V  L  D  A  R  D  P  C  G  T  R  C  Y  H  L  E  K  H  L  K  E  N  C  K  H  K  H  M  V  L  L  L  N  K  :  C  D  L  V  P  A  W  A  T  K  G  W  L  R  V  L  S  R  E  Y  P  T  L  A  F  H  A  S  V  T  K  S  F  G  K  :  G  S  L  L  S  V  L  R  Q  F  S  R  L  K  S  D  K  Q  A  I  S  V  G  F  I  G  Y  P  N  V  G  K  S  S  V  I  N  T  L  R  T  K  N  :  V  C  K  V  A  P  I  P  G  E  T  K  V  W  Q  Y  I  T  L  T  K  R  I  F  L  I  D  C  P  G  V  V  Y  Q  N  H  D  S  E  T  D  I  V  L  K  G  V  :  V  R  V  T  N  L  P  D  A  S  E  H  I  S  E  V  L  N  R  V  K  K  E  H  L  K  R  A  Y  K  I  E  N  W :   V  D  E  Y  D  F  L  Q  Q  L  C  K  S  S  G  K  L  L  K  :  G  G  E  P  D  Y  N  T  A  A  K  M  V  L  H  D  W  Q  R  G  N  I  P  F  F  V  P  P  P  K  L  D  D  E  P  N  E  L  V  A  E  A  D  T  A  V  D  N  D  Q  A  T  A  A  L  K  A  I  A  D  V  V  S  S  Q  Q  L  K  E  V  P  V  Q  E  E  L  F  S  K  A  E  L  L  G  E  N  *  Y  G  R  I  I  L  *  T  C  N  I  H  S  S  G  I  E  F  S  Y  I  V  F  T  I  F  *  L  G  P  L  H  S  Q  S  F  L  V  L  E  E  I  D  I  L  V  E  N  I  D  T  S  Y  F  C  F  N  V  Y  F  E  L  S  V  N  G  N  D  *  Y  H  L  A  Q  L  V  *  </second_frame>
            <third_frame>   W  S  V  Y  Y  K  P  A  *  T  T  E  V  L  T  L  I  A  D  S  *  T  L  V  L  F  F  V  Y  R  R  W  R  R  R  K  R  G  R  *  M  Y  R  E  S  Q  S  I  H  W  T  P  I  G  M  S  A  Q  P  K  M  A  V  A  P  L  L  C  G  G  S  R  C  T  I  P  G  R  S  V  I  L  R  V  T  *  L  S  T  T  Y  N  Q  R  S  C  H  Q  Q  G  Y  N  Q  I  V  V  G  S  :  V  I  L  G  W  S  T  R  R  N  W  S  F  L  E  K  S  S  K  L  G  F  P  V  T  T  M  L  Y  *  K  K  G  S  C  P  C  P  F  *  M  I  I  R  S :   K  *  K  F  I  C  L  T  M  S  H  L  L  M  L  L  D  Q  K  Q  R  G  N  A  P  N  L  W  H  *  I  M  K  L  *  *  R  R  L  M  C  L  M  :  M  I  L  K  T  N  M  V  L  A  P  P  W  M  K  M  L  M  D  S  E  I  L  L  G  T  Q  C  L  R  K  D  K  V  N  E  F  G  V  S  S  T  K  S  *  T  L  L  M  S  L  F  R :   F  L  M  P  E  T  P  V  V  Q  G  A  T  I  W  R  N  I  *  K  K  I  A  S  T  N  I  W  S  F  C  L  I  S :   V  I  W  S  L  L  G  Q  Q  R  D  G  L  E  C  S  L  G  N  I  Q  L  W  H  F  M  Q  V  S  P  S  P  L  E  R :   V  L  F  C  Q  C  *  D  S  F  L  V  *  R  A  I  S  K  Q  S  L  L  V  L  *  A  I  P  M  L  A  S  H  Q  L  L  I  H  C  A  Q  R  M :   F  A  R  W  L  L  S  Q  E  R  L  K  C  G  S  T  L  H  S  Q  R  G  Y  S  *  L  I  V  L  V  *  F  I  R  I  M  I  P  K  Q  I  *  S  *  R  A  W :   Y  E  *  Q  T  Y  L  M  L  L  N  T  L  A  K  C  *  I  A  L  R  R  S  I  L  K  E  L  I  R  *  R  I   : G  L  T  S  M  T  F  F  N  S  Y  A  S  L  Q  A  N  F  *  R :   E  V  N  L  T  T  I  L  L  P  R  W  F  S  M  I  G  K  E  A  T  F  L  S  L  F  H  L  Q  S  L  M  M  S  Q  M  N  L  S  Q  R  Q  T  Q  P  L  I  T  I  R  P  Q  L  L  S  K  L  L  L  T  S  F  H  H  N  N  *  R  K  F  L  F  R  R  N  Y  L  V  R  L  S  C  W  V  K  T  N  M  G  G  L  S  F  R  L  A  T  S  T  V  L  E  S  S  F  R  I  S  F  L  Q  S  F  S  W  V  H  C  I  P  R  V  F  *  S  *  K  R  L  I  Y  W  S  K  I  *  I  P  R  I  F  V  L  T  F  I  S  N  *  V  L  M  E  M  I  N  I  I  *  L  N  L  F  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0227C07.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43020" stop="42732"/>
                    <exon start="42387" stop="42254"/>
                    <exon start="41988" stop="41859"/>
                    <exon start="41742" stop="41585"/>
                    <exon start="41088" stop="40987"/>
                    <exon start="40826" stop="40722"/>
                    <exon start="40560" stop="40432"/>
                    <exon start="39841" stop="39701"/>
                    <exon start="38738" stop="38638"/>
                    <exon start="38361" stop="38304"/>
                    <exon start="37815" stop="37555"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1605</number_coding_nucleotides>
                  <number_encoded_amino_acids>535</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GINVNRRFLNPSFVLRISEMAKKKERSVNVSGKPKHSLDSNRDVSAAKNGRSAATVRRLKMYNTRPKRNPQGHIIKHDLQSKELPSTRIQPDRRWFGNTRVVNQKELEFFREELQTRLSSNYNVILKERKLPMSLLNDHQKQVKVHLLDNEPFADAFGPKTKRKRPKLMALDYEALVKKVDVSHDDFEDKHGASTSMDENADGFRDLVRHTMFEKGQSKRIWSELYKVIDSSDVVIQVLDARDPCGTRCYHLEKHLKENCKHKHMVLLLNKCDLVPAWATKGWLRVLSREYPTLAFHASVTKSFGKGSLLSVLRQFSRLKSDKQAISVGFIGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNHDSETDIVLKGVVRVTNLPDASEHISEVLNRVKKEHLKRAYKIENWVDEYDFLQQLCKSSGKLLKGGEPDYNTAAKMVLHDWQRGNIPFFVPPPKLDDEPNELVAEADTAVDNDQATAALKAIADVVSSQQLKEVPVQEELFSKAELLGEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="39503" e_stop="39162"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39503" e_stop="39162" e_length="342"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39503" stop="39162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327157" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCT</gDNA_template>
            <first_frame> N  S  R  D  V  F  L  W  *  F  E  I  K  Y  P  L  V  F  T  F  Y  K  Y  F  N  F  V  F  L  E  V  L  I  V  G  I  F  L  K  *  N  F  G  R  Q  C  *  F  R  L  A  T  R  T  A  L  L  *  L  A  Y  I  G  *  S  H  I  V  M  M  S  E  A  F  S  H  E  Y  I  W  I  G  E  D  W  K  Q  I  N  C  N  D  A  V  V  W  M  L  V  F  P  T  L  E  L  R  *  Y  C  S  E  R  G  P </first_frame>
            <second_frame>  I  P  E  M  C  S  Y  G  D  L  R  S  N  I  L  L  C  S  L  F  I  S  T  S  I  L  F  S  *  K  F  L  L  L  A  F  F  *  N  E  I  L  V  A  N  V  N  L  G  *  L  L  G  Q  R  F  Y  D  W  H  T  *  D  D  L  I  *  L  *  C  R  K  H  L  V  M  N  T  F  G  *  G  K  I  G  N  K  S  I  A  M  M  L  L  C  G  C  W  S  S  L  L  W  N  F  D  D  I  A  L  K  E  V   </second_frame>
            <third_frame>   F  Q  R  C  V  L  M  V  I  *  D  Q  I  S  S  C  V  H  F  L  *  V  L  Q  F  C  F  P  R  S  S  Y  C  W  H  F  F  K  M  K  F  W  S  P  M  L  I  *  A  S  Y  *  D  S  A  S  M  T  G  I  H  R  M  I  S  Y  S  Y  D  V  G  S  I  *  S  *  I  H  L  D  R  G  R  L  E  T  N  Q  L  Q  *  C  C  C  V  D  A  G  L  P  Y  F  G  T  S  M  I  L  L  *  K  R  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0227C07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="52119" PGL_stop="56703"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52119" e_stop="52781"/>
            <exon e_start="53319" e_stop="53528"/>
            <exon e_start="54349" e_stop="54459"/>
            <exon e_start="55453" e_stop="55821"/>
            <exon e_start="55948" e_stop="56055"/>
            <exon e_start="56236" e_stop="56703"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.985" e_score="0.997"/>
          <exon-intron don_prob="0.993" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52119" e_stop="52781" e_length="663"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.877">
            <gDNA_intron_boundary i_start="52782" i_stop="53318" i_length="537"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53319" e_stop="53528" e_length="210"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.966">
            <gDNA_intron_boundary i_start="53529" i_stop="54348" i_length="820"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54349" e_stop="54459" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="54460" i_stop="55452" i_length="993"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="55453" e_stop="55821" e_length="369"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.985">
            <gDNA_intron_boundary i_start="55822" i_stop="55947" i_length="126"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="55948" e_stop="56055" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.962">
            <gDNA_intron_boundary i_start="56056" i_stop="56235" i_length="180"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="56236" e_stop="56703" e_length="468"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52119" stop="52781"/>
              <exon start="53319" stop="53528"/>
              <exon start="54349" stop="54459"/>
              <exon start="55453" stop="55821"/>
              <exon start="55948" stop="56055"/>
              <exon start="56236" stop="56703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320751" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGGACCCCTCAACTCAATTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAAT : ATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAG : GTGTTCACATGTGGAGATAACTCATCATTCTGTTGTGGGCATAGAGACACTGGACGCCCAATCTTCAGGCCAAGAATGGTTGAAGCATTGAAAAATATTCCTGTCAAGCAG : GTTGCTGCAGGTCTCAGTTTTACTATGTTTCTCACTAGGAAAGGTCATGTTTTCACATGCGGAACGAACGGACATGGTCAACTTGGTCATGGTGACACATCGGATAGGCCAACACCGACATGTATAGAACTACTCGCATCTATTGGTTCTGTAGTTCAGATTGCTGCTGGACCTAGTTATGCACTTGCAGTGTCTGATGATGGGACTCTATACTCTTTTGGTTCGGGTACTAATTTCTGCCTTGGTCATGGAGAACAGCAGAATGAACTCCAGCCACGTGCAATCCAGTCGTTTAAGAGGAAGGGCATTAATGTGGCTCGTGTTTCTGCTGGAGATGAGCATGTTGTGGCACTGGATTCCACTGGATAT : GTATATACTTGGGGGAAAGGTTATTGCGGTGCATTGGGGCATGGTGATGAGACTGATAAGACTACTCCGTCACACTTGACCAGCCTTAAGAGCCATCTAGCAGTTCAG : GTTTGTGCAAGCAAGAGGAAAACGTTTGTCCTTGTGGACGATGGTTCTGTTTATGGCTTTGGCTGGATGGGTTTTGGTAGCCTCGGATTCCTTGACAGAGGAGCATCAGATAAAGTTTTGAAGCCTCGTATCCTGGAGAGCTTGAGATCCCATCACATATCTCAAATCAGCACTGGCTTATACCACACAGTAGTTGTTACAAATTGTGGACGAGTCTTTGGATTTGGAGACAACGAAAGAGCCCAACTTGGACATGATGCAGTAAGGGGATGCCTTGAACCTACAGAAATGTTTATGGAGAAAGCAATAAGTACAAAATATTGACTGACCAAACAAATATTGTTTCTACATCGTTATATAACATTTCAAAAAATGACTTGAATGTTTTGTGATTAGATCTTTTGTAAAGAACTTTTTTGTTGTATGATACAAAAAAGACAAATCATACATTATTGTCTTCTGAAGTTC</gDNA_template>
            <first_frame> Q  G  P  L  N  S  I  F  I  H  R  S  D  I  C  S  N  L  C  L  *  S  S  Y  L  C  G  V  L  E  F  F  L  V  I  W  *  K  K  S  L  I  L  F  C  L  F  K  F  V  F  W  G  C  C  F  L  M  I  Y  F  D  L  D  Y  K  I  S  P  P  S  P  S  F  S  Y  S  I  S  S  N  F  L  T  S  D  I  F  L  I  K  C  V  N  C  F  H  F  R  I  K  D  C  F  C  E  G  K  M  G  D  R  L  R  S  T  L  M  E  D  L  P  V  H  L  I  L  E  I  L  M  C  G  R  L  A  V  I  D  L  I  S  L  E  L  T  S  R  T  F  R  G  T  H  G  L  F  P  K  K  F  K  S  L  V  D  Y  A  A  F  Q  L  C  G  L  S  S  I  Y  A  S  L  H  C  N  A  Q  E  E  L  L  T  R  C  N  G  N  W  K  R  L  L  R  F  L  M  A  V  E  Q  S  S  D  M  V  E  T  S  A  G  N  :  M  Q  I  R  S  G  R  Y  H  T  L  L  I  N  D  S  A  A  Y  S  C  G  S  S  L  C  G  V  L  G  H  G  P  E  T  T  Q  C  V  E  F  T  R  I  S  F  P  V  P  V  Q  V  A  Q  V  S  A  S  H  N  H  A  A  F  V  T  G  S  G  Q  :  V  F  T  C  G  D  N  S  S  F  C  C  G  H  R  D  T  G  R  P  I  F  R  P  R  M  V  E  A  L  K  N  I  P  V  K  Q  :  V  A  A  G  L  S  F  T  M  F  L  T  R  K  G  H  V  F  T  C  G  T  N  G  H  G  Q  L  G  H  G  D  T  S  D  R  P  T  P  T  C  I  E  L  L  A  S  I  G  S  V  V  Q  I  A  A  G  P  S  Y  A  L  A  V  S  D  D  G  T  L  Y  S  F  G  S  G  T  N  F  C  L  G  H  G  E  Q  Q  N  E  L  Q  P  R  A  I  Q  S  F  K  R  K  G  I  N  V  A  R  V  S  A  G  D  E  H  V  V  A  L  D  S  T  G  Y  :  V  Y  T  W  G  K  G  Y  C  G  A  L  G  H  G  D  E  T  D  K  T  T  P  S  H  L  T  S  L  K  S  H  L  A  V  Q  :  V  C  A  S  K  R  K  T  F  V  L  V  D  D  G  S  V  Y  G  F  G  W  M  G  F  G  S  L  G  F  L  D  R  G  A  S  D  K  V  L  K  P  R  I  L  E  S  L  R  S  H  H  I  S  Q  I  S  T  G  L  Y  H  T  V  V  V  T  N  C  G  R  V  F  G  F  G  D  N  E  R  A  Q  L  G  H  D  A  V  R  G  C  L  E  P  T  E  M  F  M  E  K  A  I  S  T  K  Y  *  L  T  K  Q  I  L  F  L  H  R  Y  I  T  F  Q  K  M  T  *  M  F  C  D  *  I  F  C  K  E  L  F  C  C  M  I  Q  K  R  Q  I  I  H  Y  C  L  L  K  F </first_frame>
            <second_frame>  K  D  P  S  T  Q  F  S  F  I  D  P  I  F  A  Q  I  C  V  Y  K  V  P  I  F  V  G  F  W  S  F  F  L  *  F  G  R  K  R  V  *  F  C  F  V  C  S  S  L  C  F  G  V  V  V  S  *  *  F  I  S  T  *  I  I  R  F  P  H  Q  V  L  H  F  L  I  Q  F  H  Q  I  F  L  H  L  I  F  S  *  *  S  V  L  I  V  S  I  F  V  *  K  I  V  F  V  K  G  K  W  G  I  V  *  G  Q  L  *  W  R  I  C  Q  Y  I  *  F  L  K  Y  *  C  A  V  D  *  L  L  L  I  *  *  V  *  S  *  L  Q  G  L  L  G  E  H  M  V  C  F  L  K  S  S  S  L  W  *  I  M  L  L  F  S  F  V  D  *  V  Q  S  M  L  L  C  I  V  M  L  R  K  S  C  *  R  D  V  T  A  I  G  S  V  F  *  G  S  *  W  L  W  N  S  P  L  I  W  L  K  L  L  Q  A  I :   C  K  *  G  V  A  G  I  T  H  C  *  S  M  I  Q  Q  H  T  L  V  V  P  V  Y  A  A  S  L  V  M  G  L  K  Q  L  S  V  W  N  L  L  E  L  A  F  L  F  P  Y  K  L  R  K  F  Q  L  L  I  I  M  L  L  L  S  Q  G  L  D  R :   C  S  H  V  E  I  T  H  H  S  V  V  G  I  E  T  L  D  A  Q  S  S  G  Q  E  W  L  K  H  *  K  I  F  L  S  S  R :   L  L  Q  V  S  V  L  L  C  F  S  L  G  K  V  M  F  S  H  A  E  R  T  D  M  V  N  L  V  M  V  T  H  R  I  G  Q  H  R  H  V  *  N  Y  S  H  L  L  V  L  *  F  R  L  L  L  D  L  V  M  H  L  Q  C  L  M  M  G  L  Y  T  L  L  V  R  V  L  I  S  A  L  V  M  E  N  S  R  M  N  S  S  H  V  Q  S  S  R  L  R  G  R  A  L  M  W  L  V  F  L  L  E  M  S  M  L  W  H  W  I  P  L  D  M :   Y  I  L  G  G  K  V  I  A  V  H  W  G  M  V  M  R  L  I  R  L  L  R  H  T  *  P  A  L  R  A  I  *  Q  F  R :   F  V  Q  A  R  G  K  R  L  S  L  W  T  M  V  L  F  M  A  L  A  G  W  V  L  V  A  S  D  S  L  T  E  E  H  Q  I  K  F  *  S  L  V  S  W  R  A  *  D  P  I  T  Y  L  K  S  A  L  A  Y  T  T  Q  *  L  L  Q  I  V  D  E  S  L  D  L  E  T  T  K  E  P  N  L  D  M  M  Q  *  G  D  A  L  N  L  Q  K  C  L  W  R  K  Q  *  V  Q  N  I  D  *  P  N  K  Y  C  F  Y  I  V  I  *  H  F  K  K  *  L  E  C  F  V  I  R  S  F  V  K  N  F  F  V  V  *  Y  K  K  D  K  S  Y  I  I  V  F  *  S   </second_frame>
            <third_frame>   R  T  P  Q  L  N  F  H  S  *  I  R  Y  L  L  K  F  V  F  I  K  F  L  S  L  W  G  F  G  V  F  S  C  N  L  V  E  K  E  F  N  F  V  L  F  V  Q  V  C  V  L  G  L  L  F  L  D  D  L  F  R  L  R  L  *  D  F  P  T  K  S  F  I  F  L  F  N  F  I  K  F  S  Y  I  *  Y  F  L  D  K  V  C  *  L  F  P  F  S  Y  K  R  L  F  L  *  R  E  N  G  G  S  F  E  V  N  F  N  G  G  F  A  S  T  F  D  S  *  N  I  D  V  R  S  I  S  C  Y  *  F  N  K  F  R  A  N  F  K  D  F  *  G  N  T  W  F  V  S  *  K  V  Q  V  F  G  R  L  C  C  F  S  A  L  W  I  E  F  N  L  C  F  F  A  L  *  C  S  G  R  A  V  D  A  M  *  R  Q  L  E  A  S  F  E  V  L  D  G  C  G  T  V  L  *  Y  G  *  N  F  C  R  Q   : Y  A  N  K  E  W  Q  V  S  H  T  A  N  Q  *  F  S  S  I  L  L  W  F  Q  F  M  R  R  P  W  S  W  A  *  N  N  S  V  C  G  I  Y  S  N  *  L  S  C  S  R  T  S  C  A  S  F  S  F  S  *  S  C  C  F  C  H  R  V  W  T   : G  V  H  M  W  R  *  L  I  I  L  L  W  A  *  R  H  W  T  P  N  L  Q  A  K  N  G  *  S  I  E  K  Y  S  C  Q  A   : G  C  C  R  S  Q  F  Y  Y  V  S  H  *  E  R  S  C  F  H  M  R  N  E  R  T  W  S  T  W  S  W  *  H  I  G  *  A  N  T  D  M  Y  R  T  T  R  I  Y  W  F  C  S  S  D  C  C  W  T  *  L  C  T  C  S  V  *  *  W  D  S  I  L  F  W  F  G  Y  *  F  L  P  W  S  W  R  T  A  E  *  T  P  A  T  C  N  P  V  V  *  E  E  G  H  *  C  G  S  C  F  C  W  R  *  A  C  C  G  T  G  F  H  W  I   : C  I  Y  L  G  E  R  L  L  R  C  I  G  A  W  *  *  D  *  *  D  Y  S  V  T  L  D  Q  P  *  E  P  S  S  S  S   : G  L  C  K  Q  E  E  N  V  C  P  C  G  R  W  F  C  L  W  L  W  L  D  G  F  W  *  P  R  I  P  *  Q  R  S  I  R  *  S  F  E  A  S  Y  P  G  E  L  E  I  P  S  H  I  S  N  Q  H  W  L  I  P  H  S  S  C  Y  K  L  W  T  S  L  W  I  W  R  Q  R  K  S  P  T  W  T  *  C  S  K  G  M  P  *  T  Y  R  N  V  Y  G  E  S  N  K  Y  K  I  L  T  D  Q  T  N  I  V  S  T  S  L  Y  N  I  S  K  N  D  L  N  V  L  *  L  D  L  L  *  R  T  F  L  L  Y  D  T  K  K  T  N  H  T  L  L  S  S  E  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0227C07.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52230" stop="52781"/>
                    <exon start="53319" stop="53528"/>
                    <exon start="54349" stop="54459"/>
                    <exon start="55453" stop="55821"/>
                    <exon start="55948" stop="56055"/>
                    <exon start="56236" stop="56559"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1671</number_coding_nucleotides>
                  <number_encoded_amino_acids>557</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKSLILFCLFKFVFWGCCFLMIYFDLDYKISPPSPSFSYSISSNFLTSDIFLIKCVNCFHFRIKDCFCEGKMGDRLRSTLMEDLPVHLILEILMCGRLAVIDLISLELTSRTFRGTHGLFPKKFKSLVDYAAFQLCGLSSIYASLHCNAQEELLTRCNGNWKRLLRFLMAVEQSSDMVETSAGNMQIRSGRYHTLLINDSAAYSCGSSLCGVLGHGPETTQCVEFTRISFPVPVQVAQVSASHNHAAFVTGSGQVFTCGDNSSFCCGHRDTGRPIFRPRMVEALKNIPVKQVAAGLSFTMFLTRKGHVFTCGTNGHGQLGHGDTSDRPTPTCIELLASIGSVVQIAAGPSYALAVSDDGTLYSFGSGTNFCLGHGEQQNELQPRAIQSFKRKGINVARVSAGDEHVVALDSTGYVYTWGKGYCGALGHGDETDKTTPSHLTSLKSHLAVQVCASKRKTFVLVDDGSVYGFGWMGFGSLGFLDRGASDKVLKPRILESLRSHHISQISTGLYHTVVVTNCGRVFGFGDNERAQLGHDAVRGCLEPTEMFMEKAISTKY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="57158" PGL_stop="59337"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57158" e_stop="57452"/>
            <exon e_start="57544" e_stop="57722"/>
            <exon e_start="58453" e_stop="58564"/>
            <exon e_start="58638" e_stop="58754"/>
            <exon e_start="58836" e_stop="59147"/>
            <exon e_start="59301" e_stop="59337"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.790" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.945" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57158" e_stop="57452" e_length="295"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.999">
            <gDNA_intron_boundary i_start="57453" i_stop="57543" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57544" e_stop="57722" e_length="179"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.983">
            <gDNA_intron_boundary i_start="57723" i_stop="58452" i_length="730"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58453" e_stop="58564" e_length="112"/>
          </exon>
          <intron i_serial="3" don_prob="0.967" acc_prob="0.989">
            <gDNA_intron_boundary i_start="58565" i_stop="58637" i_length="73"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58638" e_stop="58754" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.790" acc_prob="0.996">
            <gDNA_intron_boundary i_start="58755" i_stop="58835" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="58836" e_stop="59147" e_length="312"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.945">
            <gDNA_intron_boundary i_start="59148" i_stop="59300" i_length="153"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="59301" e_stop="59337" e_length="37"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57158" stop="57452"/>
              <exon start="57544" stop="57722"/>
              <exon start="58453" stop="58564"/>
              <exon start="58638" stop="58724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58659" stop="58754"/>
              <exon start="58836" stop="59147"/>
              <exon start="59301" stop="59337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342178" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATAAAGAAAAAAACTTACACTACCCCGGATAGACTTGCTCTGTTCTGTCTTCTGAGAACCACCGGAGCTCTGTTCTTTCCATAAATTTGTTCCGGCGGAGGATTCAACAGAACCGGAAATAAAGAGATGCCAGATCGTTTCTTTCCAAACACCATGCCTAGTTTTGTTGATGAAACTACAGTTAAAGAATCATTTCTTGAAGGAGCAAAAGATCCATTGTTAGAGCTTCTGTATTTGCCTTATGGTACTGTTTGCGACAAGCTCAAAAGGGTTGCTTTTGATCTCAAAGAAACG : ATTGTGAAGGAGACATGGGTATGTAAAAGGGGAAGAGTGAGTGACTATACAATTTACACTGGAGCTTTAGGAACTGCTTTTTTGTTATTTAAAGCTTACCAAGTTACTCTTGACAAGAATGATCTTGCTCTCTGTTCTGATATTATCAAGGCTTGTGACTCTGCTTCCCGTGGTTCTGG : GCGTGTGACTTTCATATGTGGACAAGCTGGTGTTTATTCTCTTGGTGCAGTTGTGGCCAAACAGAGCGGGGATGAACAATTGTGTGATCACTATCTGACGAAATTCAAAGAG : ATTGAGCTTCCTAAAGATCTTCCAAATGAGTTGTTGTATGGGAGGGCTGGTTTCTTGTGGGCTTGTTCATTCTTAAACAAAAATATTGGTAGAGAAACAATATCTCCAACCCAAATT : CGAGCAGTTGTTGCTGAGGTTATAAAGTCCGGACGAAAAATGGGGAAAGGAAAATGTCCACTGATGTATGAATGGCATGGAAAAAGATACTGGGGTGCTGCTCATGGACTAGCTGGGATAATGCATGTACTTATGGACATGGAACTGAAAGCAGATGAGGTCGAGGATGTGAAGGCTACACTGCATTACATGATCCGAAATCGTTTTCCTAGTGGAAATTACCCCTCAAGTGAAGGAAGTGAATCTGACCGACTTGTGCATTGGTGTCATGGTGCTCCAGGTGTTGCCCTTACTCTAATCAAAGCAGCTAAG : GTTTTCAGCAATGACGAGTTTCTGCAGGCAGCTATAG</gDNA_template>
            <first_frame> N  K  E  K  N  L  H  Y  P  G  *  T  C  S  V  L  S  S  E  N  H  R  S  S  V  L  S  I  N  L  F  R  R  R  I  Q  Q  N  R  K  *  R  D  A  R  S  F  L  S  K  H  H  A  *  F  C  *  *  N  Y  S  *  R  I  I  S  *  R  S  K  R  S  I  V  R  A  S  V  F  A  L  W  Y  C  L  R  Q  A  Q  K  G  C  F  *  S  Q  R  N   : D  C  E  G  D  M  G  M  *  K  G  K  S  E  *  L  Y  N  L  H  W  S  F  R  N  C  F  F  V  I  *  S  L  P  S  Y  S  *  Q  E  *  S  C  S  L  F  *  Y  Y  Q  G  L  *  L  C  F  P  W  F  W  :  A  C  D  F  H  M  W  T  S  W  C  L  F  S  W  C  S  C  G  Q  T  E  R  G  *  T  I  V  *  S  L  S  D  E  I  Q  R   : D  *  A  S  *  R  S  S  K  *  V  V  V  W  E  G  W  F  L  V  G  L  F  I  L  K  Q  K  Y  W  *  R  N  N  I  S  N  P  N   : S  S  S  C  C  *  G  Y  K  V  R  T  K  N  G  E  R  K  M  S  T  D  V  *  M  A  W  K  K  I  L  G  C  C  S  W  T  S  W  D  N  A  C  T  Y  G  H  G  T  E  S  R  *  G  R  G  C  E  G  Y  T  A  L  H  D  P  K  S  F  S  *  W  K  L  P  L  K  *  R  K  *  I  *  P  T  C  A  L  V  S  W  C  S  R  C  C  P  Y  S  N  Q  S  S  *   : G  F  Q  Q  *  R  V  S  A  G  S  Y   </first_frame>
            <second_frame>  I  K  K  K  T  Y  T  T  P  D  R  L  A  L  F  C  L  L  R  T  T  G  A  L  F  F  P  *  I  C  S  G  G  G  F  N  R  T  G  N  K  E  M  P  D  R  F  F  P  N  T  M  P  S  F  V  D  E  T  T  V  K  E  S  F  L  E  G  A  K  D  P  L  L  E  L  L  Y  L  P  Y  G  T  V  C  D  K  L  K  R  V  A  F  D  L  K  E  T  :  I  V  K  E  T  W  V  C  K  R  G  R  V  S  D  Y  T  I  Y  T  G  A  L  G  T  A  F  L  L  F  K  A  Y  Q  V  T  L  D  K  N  D  L  A  L  C  S  D  I  I  K  A  C  D  S  A  S  R  G  S  G :   R  V  T  F  I  C  G  Q  A  G  V  Y  S  L  G  A  V  V  A  K  Q  S  G  D  E  Q  L  C  D  H  Y  L  T  K  F  K  E  :  I  E  L  P  K  D  L  P  N  E  L  L  Y  G  R  A  G  F  L  W  A  C  S  F  L  N  K  N  I  G  R  E  T  I  S  P  T  Q  I  :  R  A  V  V  A  E  V  I  K  S  G  R  K  M  G  K  G  K  C  P  L  M  Y  E  W  H  G  K  R  Y  W  G  A  A  H  G  L  A  G  I  M  H  V  L  M  D  M  E  L  K  A  D  E  V  E  D  V  K  A  T  L  H  Y  M  I  R  N  R  F  P  S  G  N  Y  P  S  S  E  G  S  E  S  D  R  L  V  H  W  C  H  G  A  P  G  V  A  L  T  L  I  K  A  A  K  :  V  F  S  N  D  E  F  L  Q  A  A  I  </second_frame>
            <third_frame>   *  R  K  K  L  T  L  P  R  I  D  L  L  C  S  V  F  *  E  P  P  E  L  C  S  F  H  K  F  V  P  A  E  D  S  T  E  P  E  I  K  R  C  Q  I  V  S  F  Q  T  P  C  L  V  L  L  M  K  L  Q  L  K  N  H  F  L  K  E  Q  K  I  H  C  *  S  F  C  I  C  L  M  V  L  F  A  T  S  S  K  G  L  L  L  I  S  K  K  R :   L  *  R  R  H  G  Y  V  K  G  E  E  *  V  T  I  Q  F  T  L  E  L  *  E  L  L  F  C  Y  L  K  L  T  K  L  L  L  T  R  M  I  L  L  S  V  L  I  L  S  R  L  V  T  L  L  P  V  V  L   : G  V  *  L  S  Y  V  D  K  L  V  F  I  L  L  V  Q  L  W  P  N  R  A  G  M  N  N  C  V  I  T  I  *  R  N  S  K  R :   L  S  F  L  K  I  F  Q  M  S  C  C  M  G  G  L  V  S  C  G  L  V  H  S  *  T  K  I  L  V  E  K  Q  Y  L  Q  P  K  F :   E  Q  L  L  L  R  L  *  S  P  D  E  K  W  G  K  E  N  V  H  *  C  M  N  G  M  E  K  D  T  G  V  L  L  M  D  *  L  G  *  C  M  Y  L  W  T  W  N  *  K  Q  M  R  S  R  M  *  R  L  H  C  I  T  *  S  E  I  V  F  L  V  E  I  T  P  Q  V  K  E  V  N  L  T  D  L  C  I  G  V  M  V  L  Q  V  L  P  L  L  *  S  K  Q  L  R :   F  S  A  M  T  S  F  C  R  Q  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0227C07.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57243" stop="57452"/>
                    <exon start="57544" stop="57722"/>
                    <exon start="58453" stop="58564"/>
                    <exon start="58638" stop="58754"/>
                    <exon start="58836" stop="59147"/>
                    <exon start="59301" stop="59336"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICSGGGFNRTGNKEMPDRFFPNTMPSFVDETTVKESFLEGAKDPLLELLYLPYGTVCDKLKRVAFDLKETIVKETWVCKRGRVSDYTIYTGALGTAFLLFKAYQVTLDKNDLALCSDIIKACDSASRGSGRVTFICGQAGVYSLGAVVAKQSGDEQLCDHYLTKFKEIELPKDLPNELLYGRAGFLWACSFLNKNIGRETISPTQIRAVVAEVIKSGRKMGKGKCPLMYEWHGKRYWGAAHGLAGIMHVLMDMELKADEVEDVKATLHYMIRNRFPSGNYPSSEGSESDRLVHWCHGAPGVALTLIKAAKVFSNDEFLQAAI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="59853" PGL_stop="59330"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59853" e_stop="59330"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="59853" e_stop="59330" e_length="524"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59853" stop="59330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340168" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTGAGGTGAAATTTTTGTAATTTACTTTTCTATACAACTTATTAGAGTATGATAAGATAGAATGTTTCACGTTACCTTTTAACAATACATCATATGATAATACATCTACCTTACATAAAAAAGATTAACATAGCCAATTCTACAACCCACAACATGTTCATTCTGTATGTACAAAACTAGAGTGATTGTGTTCATTTTCTGTATGTACAAAACTAGAGTTCATAAGCAGGGAACCTTGTTTCTATTGGATCTATCATGTCGAAAAAGAGATAAGCCATTCCTCCCATTCCTTCAAACAACGAGTATGGACGATCACCTCCATGCATAACTCCCTCTGATATGAGTGTTTGAGCTCTAGTGTGCAGAAAGCACGCGAAGGCCTTTGCCTTGTACAAGTACTCAACTTTACCTGTCAAACGATACAGTGAAAGAAAGACATAGGAATTTCCACTAACACCGTGACATATTCCAACTCGTTTGAGTAAGCCTCGATTCCAAATCACCTCAGCTGCTTCTATAGCT</gDNA_template>
            <first_frame> F  *  G  E  I  F  V  I  Y  F  S  I  Q  L  I  R  V  *  *  D  R  M  F  H  V  T  F  *  Q  Y  I  I  *  *  Y  I  Y  L  T  *  K  R  L  T  *  P  I  L  Q  P  T  T  C  S  F  C  M  Y  K  T  R  V  I  V  F  I  F  C  M  Y  K  T  R  V  H  K  Q  G  T  L  F  L  L  D  L  S  C  R  K  R  D  K  P  F  L  P  F  L  Q  T  T  S  M  D  D  H  L  H  A  *  L  P  L  I  *  V  F  E  L  *  C  A  E  S  T  R  R  P  L  P  C  T  S  T  Q  L  Y  L  S  N  D  T  V  K  E  R  H  R  N  F  H  *  H  R  D  I  F  Q  L  V  *  V  S  L  D  S  K  S  P  Q  L  L  L  *   </first_frame>
            <second_frame>  F  E  V  K  F  L  *  F  T  F  L  Y  N  L  L  E  Y  D  K  I  E  C  F  T  L  P  F  N  N  T  S  Y  D  N  T  S  T  L  H  K  K  D  *  H  S  Q  F  Y  N  P  Q  H  V  H  S  V  C  T  K  L  E  *  L  C  S  F  S  V  C  T  K  L  E  F  I  S  R  E  P  C  F  Y  W  I  Y  H  V  E  K  E  I  S  H  S  S  H  S  F  K  Q  R  V  W  T  I  T  S  M  H  N  S  L  *  Y  E  C  L  S  S  S  V  Q  K  A  R  E  G  L  C  L  V  Q  V  L  N  F  T  C  Q  T  I  Q  *  K  K  D  I  G  I  S  T  N  T  V  T  Y  S  N  S  F  E  *  A  S  I  P  N  H  L  S  C  F  Y  S  </second_frame>
            <third_frame>   L  R  *  N  F  C  N  L  L  F  Y  T  T  Y  *  S  M  I  R  *  N  V  S  R  Y  L  L  T  I  H  H  M  I  I  H  L  P  Y  I  K  K  I  N  I  A  N  S  T  T  H  N  M  F  I  L  Y  V  Q  N  *  S  D  C  V  H  F  L  Y  V  Q  N  *  S  S  *  A  G  N  L  V  S  I  G  S  I  M  S  K  K  R  *  A  I  P  P  I  P  S  N  N  E  Y  G  R  S  P  P  C  I  T  P  S  D  M  S  V  *  A  L  V  C  R  K  H  A  K  A  F  A  L  Y  K  Y  S  T  L  P  V  K  R  Y  S  E  R  K  T  *  E  F  P  L  T  P  *  H  I  P  T  R  L  S  K  P  R  F  Q  I  T  S  A  A  S  I  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0227C07.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59718" stop="59524"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PILQPTTCSFCMYKTRVIVFIFCMYKTRVHKQGTLFLLDLSCRKRDKPFLPFLQTTSMDDHLHA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="60321" PGL_stop="62977"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60321" e_stop="60503"/>
            <exon e_start="61386" e_stop="61564"/>
            <exon e_start="61739" e_stop="61850"/>
            <exon e_start="62401" e_stop="62517"/>
            <exon e_start="62731" e_stop="62977"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.953" acc_prob="0.997" e_score="0.995"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="0.983"/>
          <exon-intron don_prob="0.949" acc_prob="0.994" e_score="0.991"/>
          <exon-intron don_prob="0.935" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="60321" e_stop="60503" e_length="183"/>
          </exon>
          <intron i_serial="1" don_prob="0.953" acc_prob="0.997">
            <gDNA_intron_boundary i_start="60504" i_stop="61385" i_length="882"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="61386" e_stop="61564" e_length="179"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="61565" i_stop="61738" i_length="174"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="61739" e_stop="61850" e_length="112"/>
          </exon>
          <intron i_serial="3" don_prob="0.949" acc_prob="0.994">
            <gDNA_intron_boundary i_start="61851" i_stop="62400" i_length="550"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="62401" e_stop="62517" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.935" acc_prob="0.995">
            <gDNA_intron_boundary i_start="62518" i_stop="62730" i_length="213"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="62731" e_stop="62977" e_length="247"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60321" stop="60503"/>
              <exon start="61386" stop="61564"/>
              <exon start="61739" stop="61850"/>
              <exon start="62401" stop="62517"/>
              <exon start="62731" stop="62977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343136" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAAGAAATAAAAAAAATCTCAAAGATGACAGAACGTTACTATCCTAATGAAATGGATGAGCTTTCAATTGAAGAATTGGTACCTGAAAATACAAAAGACTCTTTATTCAAACTTCTTTCACTTCCTTATGATACTATTACTCAAAGACTCAAGCTAGATGCTATAAACCTCAAAGATGAA : GTTGTGAGGGAGACATGGTCAGCGAAAGGAAGACATGTAAAAGACTACACACTCTACACTGGAACTTTAGGGACTGCTTATATACTATTCAAATCATATCAAATTACTCGAAACATCGATGATATTGCACTTTGCTCCGATATTATTCAGGCATGTGACACCGCTTGCAATGGCTTTGG : ACCACCTACATTTATAGGCGGCCACGCAGGTATTTACGCTCTTGGTGCTGTTGCTGCGAAGAACAATGGTGATGATCAGTTATGTCAAATTTTTTTGACTAAATTCAAGGAG : ATGAAACTTCCAATAGATCTTGGAGATGACTTGTTTTATGGTAGAGCAGGGTACTTATGGGCATGTTCTTTCTTAAATAAACATCTTGGCAAAGGCACAATATCCATCTCCCAAATG : AGAGAAGTTGTGAATGAACTCGTCAAGTCAGGTAGAAAGTTGTCGAAATTAGAGAATTTTAAGTCTCCTTTAATGTACGAATCGAGGGGGGAAAAGTACTGGGGAGCTGCCCATGGAATAGCTGGTGTTATGAATGTTTTACTAGACATGGAACTGAAACAAGATGAAATTGAAGATGTTAAAGGAACATTAAGGTACATGATCAAGAATCGATTTTCGAGTGGAAATTATCGTACGAGTGAAGGAG</gDNA_template>
            <first_frame> K  K  E  I  K  K  I  S  K  M  T  E  R  Y  Y  P  N  E  M  D  E  L  S  I  E  E  L  V  P  E  N  T  K  D  S  L  F  K  L  L  S  L  P  Y  D  T  I  T  Q  R  L  K  L  D  A  I  N  L  K  D  E  :  V  V  R  E  T  W  S  A  K  G  R  H  V  K  D  Y  T  L  Y  T  G  T  L  G  T  A  Y  I  L  F  K  S  Y  Q  I  T  R  N  I  D  D  I  A  L  C  S  D  I  I  Q  A  C  D  T  A  C  N  G  F  G :   P  P  T  F  I  G  G  H  A  G  I  Y  A  L  G  A  V  A  A  K  N  N  G  D  D  Q  L  C  Q  I  F  L  T  K  F  K  E  :  M  K  L  P  I  D  L  G  D  D  L  F  Y  G  R  A  G  Y  L  W  A  C  S  F  L  N  K  H  L  G  K  G  T  I  S  I  S  Q  M  :  R  E  V  V  N  E  L  V  K  S  G  R  K  L  S  K  L  E  N  F  K  S  P  L  M  Y  E  S  R  G  E  K  Y  W  G  A  A  H  G  I  A  G  V  M  N  V  L  L  D  M  E  L  K  Q  D  E  I  E  D  V  K  G  T  L  R  Y  M  I  K  N  R  F  S  S  G  N  Y  R  T  S  E  G  </first_frame>
            <second_frame>  K  K  K  *  K  K  S  Q  R  *  Q  N  V  T  I  L  M  K  W  M  S  F  Q  L  K  N  W  Y  L  K  I  Q  K  T  L  Y  S  N  F  F  H  F  L  M  I  L  L  L  K  D  S  S  *  M  L  *  T  S  K  M  K :   L  *  G  R  H  G  Q  R  K  E  D  M  *  K  T  T  H  S  T  L  E  L  *  G  L  L  I  Y  Y  S  N  H  I  K  L  L  E  T  S  M  I  L  H  F  A  P  I  L  F  R  H  V  T  P  L  A  M  A  L   : D  H  L  H  L  *  A  A  T  Q  V  F  T  L  L  V  L  L  L  R  R  T  M  V  M  I  S  Y  V  K  F  F  *  L  N  S  R  R :   *  N  F  Q  *  I  L  E  M  T  C  F  M  V  E  Q  G  T  Y  G  H  V  L  S  *  I  N  I  L  A  K  A  Q  Y  P  S  P  K  * :   E  K  L  *  M  N  S  S  S  Q  V  E  S  C  R  N  *  R  I  L  S  L  L  *  C  T  N  R  G  G  K  S  T  G  E  L  P  M  E  *  L  V  L  *  M  F  Y  *  T  W  N  *  N  K  M  K  L  K  M  L  K  E  H  *  G  T  *  S  R  I  D  F  R  V  E  I  I  V  R  V  K  E </second_frame>
            <third_frame>   K  R  N  K  K  N  L  K  D  D  R  T  L  L  S  *  *  N  G  *  A  F  N  *  R  I  G  T  *  K  Y  K  R  L  F  I  Q  T  S  F  T  S  L  *  Y  Y  Y  S  K  T  Q  A  R  C  Y  K  P  Q  R  *   : S  C  E  G  D  M  V  S  E  R  K  T  C  K  R  L  H  T  L  H  W  N  F  R  D  C  L  Y  T  I  Q  I  I  S  N  Y  S  K  H  R  *  Y  C  T  L  L  R  Y  Y  S  G  M  *  H  R  L  Q  W  L  W  :  T  T  Y  I  Y  R  R  P  R  R  Y  L  R  S  W  C  C  C  C  E  E  Q  W  *  *  S  V  M  S  N  F  F  D  *  I  Q  G   : D  E  T  S  N  R  S  W  R  *  L  V  L  W  *  S  R  V  L  M  G  M  F  F  L  K  *  T  S  W  Q  R  H  N  I  H  L  P  N   : E  R  S  C  E  *  T  R  Q  V  R  *  K  V  V  E  I  R  E  F  *  V  S  F  N  V  R  I  E  G  G  K  V  L  G  S  C  P  W  N  S  W  C  Y  E  C  F  T  R  H  G  T  E  T  R  *  N  *  R  C  *  R  N  I  K  V  H  D  Q  E  S  I  F  E  W  K  L  S  Y  E  *  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0227C07.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60321" stop="60503"/>
                    <exon start="61386" stop="61564"/>
                    <exon start="61739" stop="61850"/>
                    <exon start="62401" stop="62517"/>
                    <exon start="62731" stop="62976"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>837</number_coding_nucleotides>
                  <number_encoded_amino_acids>279</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKEIKKISKMTERYYPNEMDELSIEELVPENTKDSLFKLLSLPYDTITQRLKLDAINLKDEVVRETWSAKGRHVKDYTLYTGTLGTAYILFKSYQITRNIDDIALCSDIIQACDTACNGFGPPTFIGGHAGIYALGAVAAKNNGDDQLCQIFLTKFKEMKLPIDLGDDLFYGRAGYLWACSFLNKHLGKGTISISQMREVVNELVKSGRKLSKLENFKSPLMYESRGEKYWGAAHGIAGVMNVLLDMELKQDEIEDVKGTLRYMIKNRFSSGNYRTSEG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="66986" PGL_stop="65290"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66986" e_stop="66945"/>
            <exon e_start="66746" e_stop="66589"/>
            <exon e_start="66469" e_stop="66418"/>
            <exon e_start="66281" e_stop="66199"/>
            <exon e_start="65925" e_stop="65832"/>
            <exon e_start="65667" e_stop="65290"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.116" acc_prob="0.691" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.568" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.671" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66986" e_stop="66945" e_length="42"/>
          </exon>
          <intron i_serial="1" don_prob="0.116" acc_prob="0.691">
            <gDNA_intron_boundary i_start="66944" i_stop="66747" i_length="198"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66746" e_stop="66589" e_length="158"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.968">
            <gDNA_intron_boundary i_start="66588" i_stop="66470" i_length="119"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="66469" e_stop="66418" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.568">
            <gDNA_intron_boundary i_start="66417" i_stop="66282" i_length="136"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="66281" e_stop="66199" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.988">
            <gDNA_intron_boundary i_start="66198" i_stop="65926" i_length="273"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="65925" e_stop="65832" e_length="94"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.671">
            <gDNA_intron_boundary i_start="65831" i_stop="65668" i_length="164"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="65667" e_stop="65290" e_length="378"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66986" stop="66945"/>
              <exon start="66746" stop="66589"/>
              <exon start="66469" stop="66418"/>
              <exon start="66281" stop="66199"/>
              <exon start="65925" stop="65832"/>
              <exon start="65667" stop="65290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331920" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAGCAAGTCTTGTTTGAAGGTTTTCTCACATAGTGATTATG : TAACCTGCATCCAGTTTAACCCTGTTGATGATAGATACTTTATCAGTGGGTCCCTAGATGCTAAGGTTCGCATATGGAGCATTCCAGAGAGACAAGTTGTCGATTGGAATGATCTGCATGAGATGGTCACAGCTGCTTGCTATACACCAGATGGTCAG : GGTGCATTTGTTGGTTCATACAAGGGGAATTGTCGTCAATACAACACATCAG : ACAATAAATTGCAGCATAAAGCTCAACTCAATCTTCAGAATAAGAAGAAGAAGGCTCACCAGAAGAAAATTACTGGTTTCCAG : TTTGTTCCAGGGAGTACATCAGAAGTGCTTATAACATCTGCAGATTCGAGAATTCGGGTGGTTGATGGTGTTGATCTTGTCCACAAGTTCAAAG : GTTTTCGCAATACAAACAGCCAAATCTCAGCCTCTGTGACTGCTGATGGTAGATATGTGGTCTGTGCCAGTGAGGACTCACATGTCTATATCTGGAAACATGAAGGTGATTCTCGGCCAAGCAGGAATAGAGGCGTTACCATTACACAGTCGTACGAGCATTTCCATTGTCAAGATGTTTCAGTGGCCATACCTTGGCCTGGCTTATCTGATAATCTGAAACTTCCCGATTCCTCGTTAGGGGAGCAAAATGGGCATGCTGATCATCTCGATGAGGTTTCCACTGCCAACCATCCTCCTACACCCATTGAAGAGAATGGCACCGAGTGCTCACCTCTGGTATCTGGCTGCAGTAACAGTCCTCTTCATGGGACTTTAA</gDNA_template>
            <first_frame> L  A  S  L  V  *  R  F  S  H  I  V  I  M  :  *  P  A  S  S  L  T  L  L  M  I  D  T  L  S  V  G  P  *  M  L  R  F  A  Y  G  A  F  Q  R  D  K  L  S  I  G  M  I  C  M  R  W  S  Q  L  L  A  I  H  Q  M  V  R :   V  H  L  L  V  H  T  R  G  I  V  V  N  T  T  H  Q  :  T  I  N  C  S  I  K  L  N  S  I  F  R  I  R  R  R  R  L  T  R  R  K  L  L  V  S  S :   L  F  Q  G  V  H  Q  K  C  L  *  H  L  Q  I  R  E  F  G  W  L  M  V  L  I  L  S  T  S  S  K  :  V  F  A  I  Q  T  A  K  S  Q  P  L  *  L  L  M  V  D  M  W  S  V  P  V  R  T  H  M  S  I  S  G  N  M  K  V  I  L  G  Q  A  G  I  E  A  L  P  L  H  S  R  T  S  I  S  I  V  K  M  F  Q  W  P  Y  L  G  L  A  Y  L  I  I  *  N  F  P  I  P  R  *  G  S  K  M  G  M  L  I  I  S  M  R  F  P  L  P  T  I  L  L  H  P  L  K  R  M  A  P  S  A  H  L  W  Y  L  A  A  V  T  V  L  F  M  G  L  * </first_frame>
            <second_frame>  *  Q  V  L  F  E  G  F  L  T  *  *  L  C :   N  L  H  P  V  *  P  C  *  *  *  I  L  Y  Q  W  V  P  R  C  *  G  S  H  M  E  H  S  R  E  T  S  C  R  L  E  *  S  A  *  D  G  H  S  C  L  L  Y  T  R  W  S   : G  C  I  C  W  F  I  Q  G  E  L  S  S  I  Q  H  I  R :   Q  *  I  A  A  *  S  S  T  Q  S  S  E  *  E  E  E  G  S  P  E  E  N  Y  W  F  P   : V  C  S  R  E  Y  I  R  S  A  Y  N  I  C  R  F  E  N  S  G  G  *  W  C  *  S  C  P  Q  V  Q  R :   F  S  Q  Y  K  Q  P  N  L  S  L  C  D  C  *  W  *  I  C  G  L  C  Q  *  G  L  T  C  L  Y  L  E  T  *  R  *  F  S  A  K  Q  E  *  R  R  Y  H  Y  T  V  V  R  A  F  P  L  S  R  C  F  S  G  H  T  L  A  W  L  I  *  *  S  E  T  S  R  F  L  V  R  G  A  K  W  A  C  *  S  S  R  *  G  F  H  C  Q  P  S  S  Y  T  H  *  R  E  W  H  R  V  L  T  S  G  I  W  L  Q  *  Q  S  S  S  W  D  F   </second_frame>
            <third_frame>   S  K  S  C  L  K  V  F  S  H  S  D  Y   : V  T  C  I  Q  F  N  P  V  D  D  R  Y  F  I  S  G  S  L  D  A  K  V  R  I  W  S  I  P  E  R  Q  V  V  D  W  N  D  L  H  E  M  V  T  A  A  C  Y  T  P  D  G  Q  :  G  A  F  V  G  S  Y  K  G  N  C  R  Q  Y  N  T  S   : D  N  K  L  Q  H  K  A  Q  L  N  L  Q  N  K  K  K  K  A  H  Q  K  K  I  T  G  F  Q  :  F  V  P  G  S  T  S  E  V  L  I  T  S  A  D  S  R  I  R  V  V  D  G  V  D  L  V  H  K  F  K   : G  F  R  N  T  N  S  Q  I  S  A  S  V  T  A  D  G  R  Y  V  V  C  A  S  E  D  S  H  V  Y  I  W  K  H  E  G  D  S  R  P  S  R  N  R  G  V  T  I  T  Q  S  Y  E  H  F  H  C  Q  D  V  S  V  A  I  P  W  P  G  L  S  D  N  L  K  L  P  D  S  S  L  G  E  Q  N  G  H  A  D  H  L  D  E  V  S  T  A  N  H  P  P  T  P  I  E  E  N  G  T  E  C  S  P  L  V  S  G  C  S  N  S  P  L  H  G  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0227C07.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66984" stop="66945"/>
                    <exon start="66746" stop="66589"/>
                    <exon start="66469" stop="66418"/>
                    <exon start="66281" stop="66199"/>
                    <exon start="65925" stop="65832"/>
                    <exon start="65667" stop="65291"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKSCLKVFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGAFVGSYKGNCRQYNTSDNKLQHKAQLNLQNKKKKAHQKKITGFQFVPGSTSEVLITSADSRIRVVDGVDLVHKFKGFRNTNSQISASVTADGRYVVCASEDSHVYIWKHEGDSRPSRNRGVTITQSYEHFHCQDVSVAIPWPGLSDNLKLPDSSLGEQNGHADHLDEVSTANHPPTPIEENGTECSPLVSGCSNSPLHGTL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="74616" PGL_stop="73858"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74616" e_stop="74122"/>
            <exon e_start="74021" e_stop="73858"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="0.984"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="74616" e_stop="74122" e_length="495"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="74121" i_stop="74022" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="74021" e_stop="73858" e_length="164"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74616" stop="74122"/>
              <exon start="74021" stop="73858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345099" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATGATTCCATTGTGGTTCGAGCCCATTCGGTTGATAATGTGTCTGATTATGACCAACAGACAGACATTTTCATGGTCTTAGACATCGTCGGAGCTGAACAAGTTAAGCACAGCATGCCTAATCACGCGGAAGAGAAGCTTGATCCTTCTGATGCATGTGAACCAAATGATCTTTTCATGGTTCTTGGAAGAGATTCAGCTGCTGAGCAAGTTTCAGCCTCTCGGGATACTGAAATGTATGACGAAAATGATGTCTTCCTGTCTGAAACTCTTAAGAGTCACACTGATATCAGACCTGCTTCTGCTGAGACAAAGCTTCAAACAAAAGGCGAAGGGACCAACAAAAGGATCGGTAGGGACCTTGGGCGAAAGGCAGTTATTAAAGAACCAAAATCTAAAACTTCCGTAACCGGATCTCTTGGAAGGACCAAATCTGATACATCATCAAGAATCAAGAAATCACCTTCCACATTTCAGAAGAGCAAAGCTGACAAG : GACGAGGAGAGTCGAAAGAAATTAGAACAATCATTATTGCAACGTCAAAAGAGAATCGCAGAAAGAAGTGGTGCCACTGGTTTAACCAAACCAACATCAAGGAAGAATCCAGCCACATCTTCAACAATTGAGAAATCAAAACCTGAGGCAACCAATAGATTACA</gDNA_template>
            <first_frame> D  D  S  I  V  V  R  A  H  S  V  D  N  V  S  D  Y  D  Q  Q  T  D  I  F  M  V  L  D  I  V  G  A  E  Q  V  K  H  S  M  P  N  H  A  E  E  K  L  D  P  S  D  A  C  E  P  N  D  L  F  M  V  L  G  R  D  S  A  A  E  Q  V  S  A  S  R  D  T  E  M  Y  D  E  N  D  V  F  L  S  E  T  L  K  S  H  T  D  I  R  P  A  S  A  E  T  K  L  Q  T  K  G  E  G  T  N  K  R  I  G  R  D  L  G  R  K  A  V  I  K  E  P  K  S  K  T  S  V  T  G  S  L  G  R  T  K  S  D  T  S  S  R  I  K  K  S  P  S  T  F  Q  K  S  K  A  D  K  :  D  E  E  S  R  K  K  L  E  Q  S  L  L  Q  R  Q  K  R  I  A  E  R  S  G  A  T  G  L  T  K  P  T  S  R  K  N  P  A  T  S  S  T  I  E  K  S  K  P  E  A  T  N  R  L   </first_frame>
            <second_frame>  M  I  P  L  W  F  E  P  I  R  L  I  M  C  L  I  M  T  N  R  Q  T  F  S  W  S  *  T  S  S  E  L  N  K  L  S  T  A  C  L  I  T  R  K  R  S  L  I  L  L  M  H  V  N  Q  M  I  F  S  W  F  L  E  E  I  Q  L  L  S  K  F  Q  P  L  G  I  L  K  C  M  T  K  M  M  S  S  C  L  K  L  L  R  V  T  L  I  S  D  L  L  L  L  R  Q  S  F  K  Q  K  A  K  G  P  T  K  G  S  V  G  T  L  G  E  R  Q  L  L  K  N  Q  N  L  K  L  P  *  P  D  L  L  E  G  P  N  L  I  H  H  Q  E  S  R  N  H  L  P  H  F  R  R  A  K  L  T  R :   T  R  R  V  E  R  N  *  N  N  H  Y  C  N  V  K  R  E  S  Q  K  E  V  V  P  L  V  *  P  N  Q  H  Q  G  R  I  Q  P  H  L  Q  Q  L  R  N  Q  N  L  R  Q  P  I  D  Y  </second_frame>
            <third_frame>   *  F  H  C  G  S  S  P  F  G  *  *  C  V  *  L  *  P  T  D  R  H  F  H  G  L  R  H  R  R  S  *  T  S  *  A  Q  H  A  *  S  R  G  R  E  A  *  S  F  *  C  M  *  T  K  *  S  F  H  G  S  W  K  R  F  S  C  *  A  S  F  S  L  S  G  Y  *  N  V  *  R  K  *  C  L  P  V  *  N  S  *  E  S  H  *  Y  Q  T  C  F  C  *  D  K  A  S  N  K  R  R  R  D  Q  Q  K  D  R  *  G  P  W  A  K  G  S  Y  *  R  T  K  I  *  N  F  R  N  R  I  S  W  K  D  Q  I  *  Y  I  I  K  N  Q  E  I  T  F  H  I  S  E  E  Q  S  *  Q   : G  R  G  E  S  K  E  I  R  T  I  I  I  A  T  S  K  E  N  R  R  K  K  W  C  H  W  F  N  Q  T  N  I  K  E  E  S  S  H  I  F  N  N  *  E  I  K  T  *  G  N  Q  *  I  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0227C07.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74616" stop="74122"/>
                    <exon start="74021" stop="73860"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DDSIVVRAHSVDNVSDYDQQTDIFMVLDIVGAEQVKHSMPNHAEEKLDPSDACEPNDLFMVLGRDSAAEQVSASRDTEMYDENDVFLSETLKSHTDIRPASAETKLQTKGEGTNKRIGRDLGRKAVIKEPKSKTSVTGSLGRTKSDTSSRIKKSPSTFQKSKADKDEESRKKLEQSLLQRQKRIAERSGATGLTKPTSRKNPATSSTIEKSKPEATNRL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="97161" PGL_stop="96659"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97161" e_stop="96833"/>
            <exon e_start="96754" e_stop="96659"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.404" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97161" e_stop="96833" e_length="329"/>
          </exon>
          <intron i_serial="1" don_prob="0.404" acc_prob="0.982">
            <gDNA_intron_boundary i_start="96832" i_stop="96755" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96754" e_stop="96659" e_length="96"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97161" stop="96833"/>
              <exon start="96754" stop="96659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342756" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAAACCACTATGGCACTCTGTATGCGAAAGATTGCATTAATTCTAGCTGCGTTTGCTCCAATTCTAGTTGCATCGCGGGTGGAGACCACCCTATCCATGGCTATCTCATTACTCTAGGAGAGAAAGATGGCGTTTCTATTGGAGAACCGGTATGAAGTTGTTTTTGTAATCCTTAAACTCTGCTTTCTCTCGTCATGATACGCGTACTGTCCTGTTCTCCATAGACAGGAATGTCTCGATTTTTCGTGGTTCCAAATGGAATGGAGGAGATTGTTGACTATATGAAGAAGAGATACCATAATAAACCTATGTTTGTTACTGAAAATG : GCTACGCCTCTCTGAATCCTACTACAGCACAAGCGGATGAGCTACAACATGATACTAAGCGAGTTGAATTCCATAAGTCATATCTTGCATCATTAG</gDNA_template>
            <first_frame> N  K  P  L  W  H  S  V  C  E  R  L  H  *  F  *  L  R  L  L  Q  F  *  L  H  R  G  W  R  P  P  Y  P  W  L  S  H  Y  S  R  R  E  R  W  R  F  Y  W  R  T  G  M  K  L  F  L  *  S  L  N  S  A  F  S  R  H  D  T  R  T  V  L  F  S  I  D  R  N  V  S  I  F  R  G  S  K  W  N  G  G  D  C  *  L  Y  E  E  E  I  P  *  *  T  Y  V  C  Y  *  K  W :   L  R  L  S  E  S  Y  Y  S  T  S  G  *  A  T  T  *  Y  *  A  S  *  I  P  *  V  I  S  C  I  I   </first_frame>
            <second_frame>  I  N  H  Y  G  T  L  Y  A  K  D  C  I  N  S  S  C  V  C  S  N  S  S  C  I  A  G  G  D  H  P  I  H  G  Y  L  I  T  L  G  E  K  D  G  V  S  I  G  E  P  V  *  S  C  F  C  N  P  *  T  L  L  S  L  V  M  I  R  V  L  S  C  S  P  *  T  G  M  S  R  F  F  V  V  P  N  G  M  E  E  I  V  D  Y  M  K  K  R  Y  H  N  K  P  M  F  V  T  E  N   : G  Y  A  S  L  N  P  T  T  A  Q  A  D  E  L  Q  H  D  T  K  R  V  E  F  H  K  S  Y  L  A  S  L  </second_frame>
            <third_frame>   *  T  T  M  A  L  C  M  R  K  I  A  L  I  L  A  A  F  A  P  I  L  V  A  S  R  V  E  T  T  L  S  M  A  I  S  L  L  *  E  R  K  M  A  F  L  L  E  N  R  Y  E  V  V  F  V  I  L  K  L  C  F  L  S  S  *  Y  A  Y  C  P  V  L  H  R  Q  E  C  L  D  F  S  W  F  Q  M  E  W  R  R  L  L  T  I  *  R  R  D  T  I  I  N  L  C  L  L  L  K  M  :  A  T  P  L  *  I  L  L  Q  H  K  R  M  S  Y  N  M  I  L  S  E  L  N  S  I  S  H  I  L  H  H  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0227C07.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96935" stop="96833"/>
                    <exon start="96754" stop="96660"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TGMSRFFVVPNGMEEIVDYMKKRYHNKPMFVTENGYASLNPTTAQADELQHDTKRVEFHKSYLASL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 34 chains have been computed
$ 
$ memory statistics:
$ 25872 bytes spliced alignments in total
$ 12 spliced alignments have been stored
$ 2156 bytes was the average size of a spliced alignment
$ 17672 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1767 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 40 backtrace matrices have been allocated
$ 
$ date finished: 2008-11-08 20:36:44
-->
