<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-06 15:41:00"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E539355" ref_strand="+" ref_description="SGN-E539355 [TUS-59-B5]">
      <seq>ttttttttttaagaagcattagaatgatccttgataatgtgtgttacacaatctcactatacatgctgctgtaggtatcagagaaacaaatatggccaaaaatgatctacatatacatcatatcatgcatgatacataaactactcctatttgcttgccagaacttcatctagataaaaagactccattgatcgatctgttccagagcagccatatggtgaacttatcagatcatctgctttctcattgaacatcctaacttctgtttcttggtttccctttttacctcgatctcccctagaagacactgttttgtgtttgataccaatagcttcagcctgatctgcaaataatttctttgagatggatgaactgcaaatttgtttatacacatcgtaggtagctgcatgagtgtgttccccgttcagaatgtttgaaagaggatgcaacacagaaattggatcactgttcctacttagagtttccttcatttctagaaacttagaaaccagttctggcttgctaaactgaataaacacagcactttcatccaagtggtagacagaagaaacaggatttgggccaaaggcttgtgttatacaagcttttatctcccttgcttttaggttagatggaaatccccacaacagaatgatgctaggaaatgagatatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="10223" stop="11497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10523" g_stop="11197" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="675" r_length="675" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E539355" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10523" e_stop="11197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTTCATGAAGAAGCATTAGAATGATCCTTGATAATGTGTGTTACACAATCTCACTATACATGCTGCTGTAGGTATCAGAGAAACAAATATGGCCAAAAATGATCTACATATACATCATATCATGCATGATACATAAACTACTCCTATTTGCTTGCCAGAACTTCATCTAGATAAAAAGACTCCATTGATCGATCTGTTCCAGAGCAGCCATATGGTGAACTTATCAGATCATCTGCTTTCTCATTGAACATCCTAACTTCTGTTTCTTGGTTTCCCTTTTTACCTCGATCTCCCCTAGAAGACACTGTTTTGTGTTTGATACCAATAGCTTCAGCCTGATCTGCAAATAATTTCTTTGAGATGGATGAACTGCAAATTTGTTTATACACATCGTAGGTAGCTGCATGAGTGTGTTCCCCGTTCAGAATGTTTGAAAGAGGATGCAACACAGAAATTGGATCACTGTTCCTACTTAGAGTTTCCTTCATTTCTAGAAACTTAGAAACCAGTTCTGGCTTGCTAAACTGAATAAACACAGCACTTTCATCCAAGTGGTAGACAGAAGAAACAGGATTTGGGCCAAAGGCTTGTGTTATACAAGCTTTTATCTCCCTTGCTTTTAGTTTAGATGGAAATCCCCACAACAGAATGATGCTAGGAAATGAGATATCC</genome_strand>
        <mrna_strand>TTTTTTTTTTAAGAAGCATTAGAATGATCCTTGATAATGTGTGTTACACAATCTCACTATACATGCTGCTGTAGGTATCAGAGAAACAAATATGGCCAAAAATGATCTACATATACATCATATCATGCATGATACATAAACTACTCCTATTTGCTTGCCAGAACTTCATCTAGATAAAAAGACTCCATTGATCGATCTGTTCCAGAGCAGCCATATGGTGAACTTATCAGATCATCTGCTTTCTCATTGAACATCCTAACTTCTGTTTCTTGGTTTCCCTTTTTACCTCGATCTCCCCTAGAAGACACTGTTTTGTGTTTGATACCAATAGCTTCAGCCTGATCTGCAAATAATTTCTTTGAGATGGATGAACTGCAAATTTGTTTATACACATCGTAGGTAGCTGCATGAGTGTGTTCCCCGTTCAGAATGTTTGAAAGAGGATGCAACACAGAAATTGGATCACTGTTCCTACTTAGAGTTTCCTTCATTTCTAGAAACTTAGAAACCAGTTCTGGCTTGCTAAACTGAATAAACACAGCACTTTCATCCAAGTGGTAGACAGAAGAAACAGGATTTGGGCCAAAGGCTTGTGTTATACAAGCTTTTATCTCCCTTGCTTTTAGGTTAGATGGAAATCCCCACAACAGAATGATGCTAGGAAATGAGATATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E539357" ref_strand="+" ref_description="SGN-E539357 [TUS-59-B5]">
      <seq>cttgatgtggcacatatgtacagtaaattcattggtccactaccttcaaccgctgaggattatgtatcttcccttcagaagctctttcctaccatagtggacaccaagatactcttgaatgcaaacggtgtttttcgacagactttaaataaaagcaacacctcactatccagagcatttgtctctatctgtcctcatattgctttaggtatcaaaacatctagtttggctgatagaccgtgtgtagaagtggaggttcaagtagatgaaaaaagatcctcgaactggaactcaggagccaagcatgaagctggctatgatgcattcatgactggatgcatttttgcacaggcgtgcaatcatctaggcattgatttcaccctccatgtgcttggtggagatttagcgaaggatacaaagcttcagaattatatcaatcgcctttaccttagctgggttagtggtaacgtcattgatctaagtagtgggaaatgtacaccagactcctcagcttctagcaacctcaaaagtcggtaccaggatatctcatttcctagcatcattctgttgtggggatttccatctaaactaaaagcaagggagataaaagcttgtataacacaagcctttggcccaaatcctgtttcttctgtctaccacttggatgaaagtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="12400" stop="10762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12184" g_stop="12181" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12180" i_stop="12100" i_length="81">
            <donor d_prob="0.844" d_score="0.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12099" g_stop="11829" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="275" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11828" i_stop="11462" i_length="367">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11461" g_stop="11062" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="675" r_length="400" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E539357" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12184" e_stop="12181"/>
          <exon e_start="12099" e_stop="11829"/>
          <exon e_start="11461" e_stop="11062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGTAAATATTTCCTTTTTGACTTATGGAAAGGCTACATTATGTATTTCAAGTTTTGCTCAACACTTTATACAATGAATGCAGATGTGGCACATATGTACAGTAAATTCATTGGTCCACTACCTTCAACCGCTGAGGATTATGTATCTTCCCTTCAGAAGCTCTTTCCTACCATAGTGGACACCAAGATACTCTTGAATGCAAACGGTGTTTTTCGACAGACTTTAAATAAAAGCAACACCTCACTATCCAGAGCATTTGTCTCTATCTGTCCTCATATTGCTTTAGGTATCAAAACATCTAGTTTGGCTGATAGACCGTGTGTAGAAGTGGAGGTTCAAGTAGATGAAAAAAGGTTACCACCAATCCCACACTACTCTTGAGACTGAATCTACATGATGCAATTTGTTATTTCACTGCGTGCTTACCATTTCCATTTGCCCGACTGTTTCTAGCGTGGCAATTGATTTTGATCTACATCTTTTACGCACATCTTTCTTTTTCTCCTGTTGGAGTTCTGTATGCATATGACACTGTGATGTTATGTGTGTCTCAACTGTGTTTGCTTTGCATCTTGGTCTATTTGATTAGGATTGTGAAGAAAATTTTTCGCCTCTTTCAGCACTCCTATAGCATTAACCTATTGAGCCGCATCTCGATTTATAAATCAAAAAGAACAATGTGAATAATCCTTGTCACTAATTTTTTAAGTTGATTTGCAGATCCTCGAACTGGAACTCAGGAGCCAAGCATGAAGCTGGCTATGATGCATTCATGACTGGATGCATTTTTGCACAGGCGTGCAATCATCTAGGCATTGATTTCACCCTCCATGTGCTTGGTGGAGATTTAGCGAAGGATACAAAGCTTCAGAATTATATCAATCGCCTTTACCTTAGCTGGGTTAGTGGTAACGTCATTGATCTAAGTAGTGGGAAATGTACACCAGACTCCTCAGCTTCTAGCAACCTCAAAAGTCGGTACCAGGATATCTCATTTCCTAGCATCATTCTGTTGTGGGGATTTCCATCTAAACTAAAAGCAAGGGAGATAAAAGCTTGTATAACACAAGCCTTTGGCCCAAATCCTGTTTCTTCTGTCTACCACTTGGATGAAAGTGCT</genome_strand>
        <mrna_strand>CTTG.................................................................................ATGTGGCACATATGTACAGTAAATTCATTGGTCCACTACCTTCAACCGCTGAGGATTATGTATCTTCCCTTCAGAAGCTCTTTCCTACCATAGTGGACACCAAGATACTCTTGAATGCAAACGGTGTTTTTCGACAGACTTTAAATAAAAGCAACACCTCACTATCCAGAGCATTTGTCTCTATCTGTCCTCATATTGCTTTAGGTATCAAAACATCTAGTTTGGCTGATAGACCGTGTGTAGAAGTGGAGGTTCAAGTAGATGAAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................ATCCTCGAACTGGAACTCAGGAGCCAAGCATGAAGCTGGCTATGATGCATTCATGACTGGATGCATTTTTGCACAGGCGTGCAATCATCTAGGCATTGATTTCACCCTCCATGTGCTTGGTGGAGATTTAGCGAAGGATACAAAGCTTCAGAATTATATCAATCGCCTTTACCTTAGCTGGGTTAGTGGTAACGTCATTGATCTAAGTAGTGGGAAATGTACACCAGACTCCTCAGCTTCTAGCAACCTCAAAAGTCGGTACCAGGATATCTCATTTCCTAGCATCATTCTGTTGTGGGGATTTCCATCTAAACTAAAAGCAAGGGAGATAAAAGCTTGTATAACACAAGCCTTTGGCCCAAATCCTGTTTCTTCTGTCTACCACTTGGATGAAAGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E281709" ref_strand="+" ref_description="SGN-E281709 [cLER-14-L18]">
      <seq>aattcattggtccactaccttcaaccgctgaggattatgtatcttcccttcagaagctctttcctaccatagtggacaccaagatactcttgaatgcaaacggtgtttttcgacagactttaaataaaagcaacacctcactatccagagcatttgtctctatctgtcctcatattgctttaggtatcaaaacatctagtttggctgatagaccgtgtgtagaagtggaggttcaagtagatgaaaaaagatcctcgaactggaactcaggagccaagcatgaagctggctatgatgcattcatgactggatgcatttttgcacaggcgtgcaatcatctaggcattgatttcaccctccatgtgcttggtggagatttagcgaaggatacaaagcttcagaattatatcaatcgcctttaccttagctgggttagtggtaacgtcattgatctaagtagtgggaaatgtacaccagactcctcagcttctagcaacctcaaaagtcggtaccaggatatctcatttcctagcatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="12378" stop="10873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12078" g_stop="11829" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11828" i_stop="11462" i_length="367">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11461" g_stop="11173" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="539" r_length="289" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E281709" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12078" e_stop="11829"/>
          <exon e_start="11461" e_stop="11173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCATTGGTCCACTACCTTCAACCGCTGAGGATTATGTATCTTCCCTTCAGAAGCTCTTTCCTACCATAGTGGACACCAAGATACTCTTGAATGCAAACGGTGTTTTTCGACAGACTTTAAATAAAAGCAACACCTCACTATCCAGAGCATTTGTCTCTATCTGTCCTCATATTGCTTTAGGTATCAAAACATCTAGTTTGGCTGATAGACCGTGTGTAGAAGTGGAGGTTCAAGTAGATGAAAAAAGGTTACCACCAATCCCACACTACTCTTGAGACTGAATCTACATGATGCAATTTGTTATTTCACTGCGTGCTTACCATTTCCATTTGCCCGACTGTTTCTAGCGTGGCAATTGATTTTGATCTACATCTTTTACGCACATCTTTCTTTTTCTCCTGTTGGAGTTCTGTATGCATATGACACTGTGATGTTATGTGTGTCTCAACTGTGTTTGCTTTGCATCTTGGTCTATTTGATTAGGATTGTGAAGAAAATTTTTCGCCTCTTTCAGCACTCCTATAGCATTAACCTATTGAGCCGCATCTCGATTTATAAATCAAAAAGAACAATGTGAATAATCCTTGTCACTAATTTTTTAAGTTGATTTGCAGATCCTCGAACTGGAACTCAGGAGCCAAGCATGAAGCTGGCTATGATGCATTCATGACTGGATGCATTTTTGCACAGGCGTGCAATCATCTAGGCATTGATTTCACCCTCCATGTGCTTGGTGGAGATTTAGCGAAGGATACAAAGCTTCAGAATTATATCAATCGCCTTTACCTTAGCTGGGTTAGTGGTAACGTCATTGATCTAAGTAGTGGGAAATGTACACCAGACTCCTCAGCTTCTAGCAACCTCAAAAGTCGGTACCAGGATATCTCATTTCCTAGCATCATT</genome_strand>
        <mrna_strand>AATTCATTGGTCCACTACCTTCAACCGCTGAGGATTATGTATCTTCCCTTCAGAAGCTCTTTCCTACCATAGTGGACACCAAGATACTCTTGAATGCAAACGGTGTTTTTCGACAGACTTTAAATAAAAGCAACACCTCACTATCCAGAGCATTTGTCTCTATCTGTCCTCATATTGCTTTAGGTATCAAAACATCTAGTTTGGCTGATAGACCGTGTGTAGAAGTGGAGGTTCAAGTAGATGAAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................ATCCTCGAACTGGAACTCAGGAGCCAAGCATGAAGCTGGCTATGATGCATTCATGACTGGATGCATTTTTGCACAGGCGTGCAATCATCTAGGCATTGATTTCACCCTCCATGTGCTTGGTGGAGATTTAGCGAAGGATACAAAGCTTCAGAATTATATCAATCGCCTTTACCTTAGCTGGGTTAGTGGTAACGTCATTGATCTAAGTAGTGGGAAATGTACACCAGACTCCTCAGCTTCTAGCAACCTCAAAAGTCGGTACCAGGATATCTCATTTCCTAGCATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E246837" ref_strand="+" ref_description="SGN-E246837 [cLEF-41-O21]">
      <seq>catttattccacgctccgaccaccattttcactacgcgcgggcgcacactctcatcatcttcttccttccatattaagaatgtgaccaaatcaaacttcgaatcagctctcaaggaccttcgaggtcttctacgggacgccgatttcgtagctgtagacttggaaatgaccggagtcaccagtgctccttggagagaatcattcgattacgaccggtatgatattagctacctgaaagttaaggactccgccgagaagttcgccgtcgttcagttcggcgtttgtcccttccggtgggatcctcacaagcaatccttcatcgctcatccacacaacttctacatattcccacggcaagaaattcctggtagcaaccaatcccgtgagttcctttgccagacaacatcacttgatttcttggcaaaataccagtttgatttcaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="15450" stop="13701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15150" g_stop="14822" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14821" i_stop="14119" i_length="703">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14118" g_stop="14001" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="447" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E246837" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15150" e_stop="14822"/>
          <exon e_start="14118" e_stop="14001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTATCCCACGCTCCGACCACCATTTTCACTACGCGCCGCCGCACACTCTCATCATCTTCTTCCTTCGATATTAAGAATGTTACCAAATCAAACTTCGAATCAGCTCTCAAGGACCTTCGAGGTCTTCTACGGGACGCCGATTTCGTAGCTGTAGACTTGGAAATGACCGGAGTCACCAGTGCTCCTTGGAGAGAATCATTCGATTACGACCGGTATGATATTAGCTACCTGAAAGTTAAGGACTCCGCCGAGAAGTTCGCCGTCGTTCAGTTCGGCGTTTGTCCCTTCCGGTGGGATCCTCACAAGCAATCCTTCATCGCTCATCCGTAAGTTTTCGCTCATCCTTCTTGTGTTTTGTTCGGTGAAGCATACATAGAATCCCAATCAACTTATTTAGAACTGATCTTCTAGTGTTTCTCTGAATGATATAAAGGATAAGTATAGTTTACTGCAACTTATTTGAATTTGATGCTTAGTTAATTGATTGATGTTTTTTGTCCTAGTGAATTCTTTATGAACAAAGAAATTGATTTGTTTTTGGAAAACCGTTTATCTTAAGGAGAAGCTTATCTTAGAGCCTAGACGATGACACTGAAGCACACATTAAGTGCGACAAAACACTCGACATGTTTTGGCCCTTGCTTCAGGGCTTATGGCGCCTTTGACAATACTGTGAGAACTGTCGGCATTCCTGTTTGTCCAAGTAGGGAGCTCATGTGAGCATTCCAGTGTCGAGAGAAGGGAAAGTTTGTTTCTCTTGCTTTTGATGAAATACAAATCATCACCTGTTTAGCAGCAACATATATGTTTGACTTTGAGATGTTGCATATTGCATTTTCTGTATCAATGCTTTTTTAGGATGGTAACATATCTGCAGTGTCAATATCAAGTCCGCTCTATTTGGGTGTTCTGCTCAATACGGGCAGAGTAAATGTGTTTTTTCAAGGGGACGAGCAGCATAGGTTGTCTTTATCGGTTAATGTTACATTTTGAATTTTCAAGTCTGATACTCTTATTTCTCTTTGGCAGACACAACTTCTACATATTCCCACGGCAAGAAATTCCTGGTAGCAACCAATCCCGTGAGTTCCTTTGCCAGACAACATCACTTGATTTCTTGGCAAAATACCAGTTTGATTTCAATCTG</genome_strand>
        <mrna_strand>CATTTATTCCACGCTCCGACCACCATTTTCACTACGCGCGGGCGCACACTCTCATCATCTTCTTCCTTCCATATTAAGAATGTGACCAAATCAAACTTCGAATCAGCTCTCAAGGACCTTCGAGGTCTTCTACGGGACGCCGATTTCGTAGCTGTAGACTTGGAAATGACCGGAGTCACCAGTGCTCCTTGGAGAGAATCATTCGATTACGACCGGTATGATATTAGCTACCTGAAAGTTAAGGACTCCGCCGAGAAGTTCGCCGTCGTTCAGTTCGGCGTTTGTCCCTTCCGGTGGGATCCTCACAAGCAATCCTTCATCGCTCATCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAACTTCTACATATTCCCACGGCAAGAAATTCCTGGTAGCAACCAATCCCGTGAGTTCCTTTGCCAGACAACATCACTTGATTTCTTGGCAAAATACCAGTTTGATTTCAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E201468" ref_strand="+" ref_description="SGN-E201468 [cLEC-4-A18]">
      <seq>cgctccgaccaccattttcactacgcgccgccgcacactctcatcatcttcttccttcgatattaagaatgttaccaaatcaaacttcgaatcagctctcaaggaccttcgaggtcttctacgggacgccgatttcgtagctgtagacttggaaatgaccggagtcaccagtgctccttggagagaatcattcgattacgaccggtatgatattagctacctgaaagttaaggactccgccgagaagttcgccgtcgttcagttcggcgtttgtcccttccggtgggatcctcacaagcaatccttcatcgctcatccacacaacttctacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="15439" stop="14514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15139" g_stop="14822" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E201468" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15139" e_stop="14822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTCCGACCACCATTTTCACTACGCGCCGCCGCACACTCTCATCATCTTCTTCCTTCGATATTAAGAATGTTACCAAATCAAACTTCGAATCAGCTCTCAAGGACCTTCGAGGTCTTCTACGGGACGCCGATTTCGTAGCTGTAGACTTGGAAATGACCGGAGTCACCAGTGCTCCTTGGAGAGAATCATTCGATTACGACCGGTATGATATTAGCTACCTGAAAGTTAAGGACTCCGCCGAGAAGTTCGCCGTCGTTCAGTTCGGCGTTTGTCCCTTCCGGTGGGATCCTCACAAGCAATCCTTCATCGCTCATCC</genome_strand>
        <mrna_strand>CGCTCCGACCACCATTTTCACTACGCGCCGCCGCACACTCTCATCATCTTCTTCCTTCGATATTAAGAATGTTACCAAATCAAACTTCGAATCAGCTCTCAAGGACCTTCGAGGTCTTCTACGGGACGCCGATTTCGTAGCTGTAGACTTGGAAATGACCGGAGTCACCAGTGCTCCTTGGAGAGAATCATTCGATTACGACCGGTATGATATTAGCTACCTGAAAGTTAAGGACTCCGCCGAGAAGTTCGCCGTCGTTCAGTTCGGCGTTTGTCCCTTCCGGTGGGATCCTCACAAGCAATCCTTCATCGCTCATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E739321" ref_strand="+" ref_description="SGN-E739321 [LC16DH06]">
      <seq>ccttttatgtcagcattgccatctacgttactcgctgaagcgcatatgcttcgggacagagctatgagtcattaccaagcacgcagcttgtttggaggcagccacaggcttcatggtcgtagaaatggtctgggatttgacagacagacagttatggacaggggtgtgggtgttacaattgcccggagggcttcatcctctttttcagagagtttgaagttgaaggaacttgaaggcgagccacttttagatgctcatggcttgaaagcattgatccgcctcttgcgcttagcacagcctcttgggaaaggtctgttgcaaagactcttgttgaatttgtctgctcatagcagtacaagagcagttctagtccaccttcttcttgaagctatcaagcccgagactggaggggctggtggtggtttaacaaccattaactcacagagactttatggctgtcagtcgaatattgtttatggacgatcacaattatttgatggtcttcctccactggtattgcggcggattctggagatcttaacttaccttgctaccaaccactctgcagttgccagtcttcttttctactttgatctctcgcttattccagagtggtcagatgtgaagtgtttggaaaataatagggacaaaggcaacgagaaaattgttgaacaaaatccctccaatcctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="26997" stop="28539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27296" g_stop="27592" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27593" i_stop="27763" i_length="171">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27764" g_stop="27965" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="499" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27966" i_stop="28044" i_length="79">
            <donor d_prob="0.573" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28045" g_stop="28239" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="694" r_length="195" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E739321" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27296" e_stop="27592"/>
          <exon e_start="27764" e_stop="27965"/>
          <exon e_start="28045" e_stop="28239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTTTGTCAGCATTGCCATCTACGTTACTCGCTGAAGCGCAAATGCTTCGGGACAGAGCTATGAGTCATTACCAAGCACGCAGCTTGTTTGGAGGCAGCCACAGGCTTCATGGTCGTAGAAATGGTCTGGGATTTGACAGACAGACAGTTATGGACAGGGGTGTGGGTGTTACAATTGCCCGGAGGGCTTCATCCTCTTTTTCAGAGAGTTTGAAGTTGAAGGAACTTGAAGGCGAGCCACTTTTAGATGCTCATGGCTTGAAAGCATTGATCCGCCTCTTGCGCTTAGCACAGGTAAATTGCTTCACATCAACCGATCAAGCACCTTTGAAATGAAAATGCTTCTGTCATCAAACAATTGGCTTGCTTCTGTAGAGTTGTAATTGACGTTGTGATGTTTTGGTTTTTATATTTTTTTGTATGCGCTCAACAACTTTAACTGAGACATTCAATATTTGTTTTCAGCCTCTTGGGAAAGGTCTGTTGCAAAGACTCTTGTTGAATTTGTCTGCTCATAGCAGTACAAGAGCAGTTCTAGTCCACCTTCTTCTTGAAGCTATCAAGCCCGAGACTGGAGGGGCTGGTGGTGGTTTAACAACCATTAACTCACAGAGACTTTATGGCTGTCAGTCGAATATTGTTTATGGACGATCACAATTATTTGATGGTATCTGTCTCTTCTTAAGTGACGTTATAGGTCTCTGTTTACATATGGTCTGTTGCTAACCATTTAAGTCATTTTCCAGGTCTTCCTCCACTGGTATTGCGGCGGATTCTGGAGATCTTAACTTACCTTGCTACCAACCACTCTGCAGTTGCCAGTCTTCTTTTCTACTTTGATCTCTCGCTTATTCCAGAGTGGTCAGATGTGAAGTGTTTGGAAAATAAGAGGGACAAAGGCAAGGAGAAAATTGTTGAAGAAGATCCCTCCAATCCTTTTA</genome_strand>
        <mrna_strand>CCTTTTATGTCAGCATTGCCATCTACGTTACTCGCTGAAGCGCATATGCTTCGGGACAGAGCTATGAGTCATTACCAAGCACGCAGCTTGTTTGGAGGCAGCCACAGGCTTCATGGTCGTAGAAATGGTCTGGGATTTGACAGACAGACAGTTATGGACAGGGGTGTGGGTGTTACAATTGCCCGGAGGGCTTCATCCTCTTTTTCAGAGAGTTTGAAGTTGAAGGAACTTGAAGGCGAGCCACTTTTAGATGCTCATGGCTTGAAAGCATTGATCCGCCTCTTGCGCTTAGCACAG...........................................................................................................................................................................CCTCTTGGGAAAGGTCTGTTGCAAAGACTCTTGTTGAATTTGTCTGCTCATAGCAGTACAAGAGCAGTTCTAGTCCACCTTCTTCTTGAAGCTATCAAGCCCGAGACTGGAGGGGCTGGTGGTGGTTTAACAACCATTAACTCACAGAGACTTTATGGCTGTCAGTCGAATATTGTTTATGGACGATCACAATTATTTGATG...............................................................................GTCTTCCTCCACTGGTATTGCGGCGGATTCTGGAGATCTTAACTTACCTTGCTACCAACCACTCTGCAGTTGCCAGTCTTCTTTTCTACTTTGATCTCTCGCTTATTCCAGAGTGGTCAGATGTGAAGTGTTTGGAAAATAATAGGGACAAAGGCAACGAGAAAATTGTTGAACAAAATCCCTCCAATCCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E735528" ref_strand="+" ref_description="SGN-E735528 [LC02AA07]">
      <seq>cggatggaacttgaaggcgagccacttttagatgctcatggcttgaaagcattgatccgcctcttgcgcttagcacagcctcttgggaaaggtctgttgcaaagactcttgttgaatttgtctgctcatagcagtacaagagcagttctagtccaccttcttcttgaagctatcaagcccgagactggaggggctggtggtggtttaacaaccattaactcacagagactttatggctgtcagtcgaatattgtttatggacgatcacaattatttgatggtcttcctccactggtattgcggcggattctggagatcttaacttaccttgctaccaaccactctgcagttgccagtcttcttttctactttgatctctcgcttattccagagtggtcagatgtgaagtgtttggaaaataagagggacaaaggcaaggagaaaattgttgaagaagatccctccaatccttttagaagctctaacaagagggatattccattggttttgtttctgaagctcttgaaccaaccactttttttgcgcagcatagcacatcttgaacaggtcatgggactccttcaagtagttgtctatactgctgcatccaagatggagtgtcagtcttattctgaagaaaccgtacaccgttctcataatgaaacagtaaagggttctattatccctgatggccatgaaactatgagtgatatacagaaagatcctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="27217" stop="28889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27515" g_stop="27592" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27593" i_stop="27763" i_length="171">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27764" g_stop="27965" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="280" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27966" i_stop="28044" i_length="79">
            <donor d_prob="0.573" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28045" g_stop="28331" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="567" r_length="287" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28332" i_stop="28428" i_length="97">
            <donor d_prob="0.951" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28429" g_stop="28589" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="728" r_length="161" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E735528" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27515" e_stop="27592"/>
          <exon e_start="27764" e_stop="27965"/>
          <exon e_start="28045" e_stop="28331"/>
          <exon e_start="28429" e_stop="28589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGGAACTTGAAGGCGAGCCACTTTTAGATGCTCATGGCTTGAAAGCATTGATCCGCCTCTTGCGCTTAGCACAGGTAAATTGCTTCACATCAACCGATCAAGCACCTTTGAAATGAAAATGCTTCTGTCATCAAACAATTGGCTTGCTTCTGTAGAGTTGTAATTGACGTTGTGATGTTTTGGTTTTTATATTTTTTTGTATGCGCTCAACAACTTTAACTGAGACATTCAATATTTGTTTTCAGCCTCTTGGGAAAGGTCTGTTGCAAAGACTCTTGTTGAATTTGTCTGCTCATAGCAGTACAAGAGCAGTTCTAGTCCACCTTCTTCTTGAAGCTATCAAGCCCGAGACTGGAGGGGCTGGTGGTGGTTTAACAACCATTAACTCACAGAGACTTTATGGCTGTCAGTCGAATATTGTTTATGGACGATCACAATTATTTGATGGTATCTGTCTCTTCTTAAGTGACGTTATAGGTCTCTGTTTACATATGGTCTGTTGCTAACCATTTAAGTCATTTTCCAGGTCTTCCTCCACTGGTATTGCGGCGGATTCTGGAGATCTTAACTTACCTTGCTACCAACCACTCTGCAGTTGCCAGTCTTCTTTTCTACTTTGATCTCTCGCTTATTCCAGAGTGGTCAGATGTGAAGTGTTTGGAAAATAAGAGGGACAAAGGCAAGGAGAAAATTGTTGAAGAAGATCCCTCCAATCCTTTTAGAAGCTCTAACAAGAGGGATATTCCATTGGTTTTGTTTCTGAAGCTCTTGAACCAGCCACTTTTTTTGCGCAGCATAGCACATCTTGAACAGGTAGATTATGGTCAAATGCTTTGATGTTACTGAAATATTTAGGTCTGGCGATAGTTAATTCAGATACATTTGTTGTTTCCTTGAATGTACTGTGTAGGTCATGGGACTCCTTCAAGTAGTTGTCTATACTGCTGCATCCAAGATGGAGTGTCAGTCTCATTCTGAAGAAACAGTAGACCGTTCTCATAATGAAACAGTAGAGGGTTCTAATAATCCTGATGGCAATGAAACTATGAGTGATATACAGAAAGATCCTGC</genome_strand>
        <mrna_strand>CGGATGGAACTTGAAGGCGAGCCACTTTTAGATGCTCATGGCTTGAAAGCATTGATCCGCCTCTTGCGCTTAGCACAG...........................................................................................................................................................................CCTCTTGGGAAAGGTCTGTTGCAAAGACTCTTGTTGAATTTGTCTGCTCATAGCAGTACAAGAGCAGTTCTAGTCCACCTTCTTCTTGAAGCTATCAAGCCCGAGACTGGAGGGGCTGGTGGTGGTTTAACAACCATTAACTCACAGAGACTTTATGGCTGTCAGTCGAATATTGTTTATGGACGATCACAATTATTTGATG...............................................................................GTCTTCCTCCACTGGTATTGCGGCGGATTCTGGAGATCTTAACTTACCTTGCTACCAACCACTCTGCAGTTGCCAGTCTTCTTTTCTACTTTGATCTCTCGCTTATTCCAGAGTGGTCAGATGTGAAGTGTTTGGAAAATAAGAGGGACAAAGGCAAGGAGAAAATTGTTGAAGAAGATCCCTCCAATCCTTTTAGAAGCTCTAACAAGAGGGATATTCCATTGGTTTTGTTTCTGAAGCTCTTGAACCAACCACTTTTTTTGCGCAGCATAGCACATCTTGAACAG.................................................................................................GTCATGGGACTCCTTCAAGTAGTTGTCTATACTGCTGCATCCAAGATGGAGTGTCAGTCTTATTCTGAAGAAACCGTACACCGTTCTCATAATGAAACAGTAAAGGGTTCTATTATCCCTGATGGCCATGAAACTATGAGTGATATACAGAAAGATCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E555490" ref_strand="+" ref_description="SGN-E555490 [cTSC-4-E19]">
      <seq>gtttaacaaccattaactcacagagactttatggctgtcagtcgaatattgtttatggacgatcacaattatttgatggtcttcctccactggtattgcggcggattctggagatcttaacttaccttgctaccaaccactctgcagttgccagtcttcttttctactttgatctctcgcttattccagagtggtcagatgtgaagtgtttggaaaataagagggacaaaggcaaggagaaaattgttgaagaagatccctccaatccttttagaagctctaacaagagggatattccattggttttgtttctgaagctcttgaaccagccactttttttgcgcagcatagcacatcttgaacaggtcatgggactccttcaagtagttgtctatactgctgcatccaagatggagtgtcagtctcattctgaagaaacagtagaccgttctcataatgaaacagtagagggttctaataatcctgatggcaatgaaactatgagtgatatacagaaagatcctgcgttgccagacataaagtcccctcaagatgatagcggcactggttctgccaaccctgcatctgatgccaatggaagcacaatcattcatgacatcttcttgcagctgccacattctgatttgcacaatctttgctgtcttcttggtcatgaaggactctcagataaagtttacatgcttgcgggtgaggtgttgaagaagctagcctcagttgctgctccccatcggaagttcttcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="27588" stop="29263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27888" g_stop="27965" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27966" i_stop="28044" i_length="79">
            <donor d_prob="0.573" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28045" g_stop="28331" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="365" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28332" i_stop="28428" i_length="97">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28429" g_stop="28742" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="679" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28743" i_stop="28877" i_length="135">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.271" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28878" g_stop="28963" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="765" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E555490" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27888" e_stop="27965"/>
          <exon e_start="28045" e_stop="28331"/>
          <exon e_start="28429" e_stop="28742"/>
          <exon e_start="28878" e_stop="28963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAACAACCATTAACTCACAGAGACTTTATGGCTGTCAGTCGAATATTGTTTATGGACGATCACAATTATTTGATGGTATCTGTCTCTTCTTAAGTGACGTTATAGGTCTCTGTTTACATATGGTCTGTTGCTAACCATTTAAGTCATTTTCCAGGTCTTCCTCCACTGGTATTGCGGCGGATTCTGGAGATCTTAACTTACCTTGCTACCAACCACTCTGCAGTTGCCAGTCTTCTTTTCTACTTTGATCTCTCGCTTATTCCAGAGTGGTCAGATGTGAAGTGTTTGGAAAATAAGAGGGACAAAGGCAAGGAGAAAATTGTTGAAGAAGATCCCTCCAATCCTTTTAGAAGCTCTAACAAGAGGGATATTCCATTGGTTTTGTTTCTGAAGCTCTTGAACCAGCCACTTTTTTTGCGCAGCATAGCACATCTTGAACAGGTAGATTATGGTCAAATGCTTTGATGTTACTGAAATATTTAGGTCTGGCGATAGTTAATTCAGATACATTTGTTGTTTCCTTGAATGTACTGTGTAGGTCATGGGACTCCTTCAAGTAGTTGTCTATACTGCTGCATCCAAGATGGAGTGTCAGTCTCATTCTGAAGAAACAGTAGACCGTTCTCATAATGAAACAGTAGAGGGTTCTAATAATCCTGATGGCAATGAAACTATGAGTGATATACAGAAAGATCCTGCGTTGCCAGACATAAAGTCCCCTCAAGATGATAGCGGCACTGGTTCTGCCAACCCTGCATCTGATGCCAATGGAAGCACAATCATTCATGACATCTTCTTGCAGCTGCCACATTCTGATTTGCACAATCTTTGCTGTCTTCTTGGTCATGAAGGGTATTTTTCTATTTAAATTGCTGTATCTTTTCATTTCCCGTTCCTTGATTTCCCATTTTGGTTCATCTTTCTTCTTCACTTCTGAAAGACAAATGTTGTGTTGCAACTACCTGACCTCTAGTGTATGTCGTTTAGACTCTCAGATAAAGTTTACATGCTTGCGGGTGAGGTGTTGAAGAAGCTAGCCTCAGTTGCTGCTCCCCATCGGAAGTTCTTCATTT</genome_strand>
        <mrna_strand>GTTTAACAACCATTAACTCACAGAGACTTTATGGCTGTCAGTCGAATATTGTTTATGGACGATCACAATTATTTGATG...............................................................................GTCTTCCTCCACTGGTATTGCGGCGGATTCTGGAGATCTTAACTTACCTTGCTACCAACCACTCTGCAGTTGCCAGTCTTCTTTTCTACTTTGATCTCTCGCTTATTCCAGAGTGGTCAGATGTGAAGTGTTTGGAAAATAAGAGGGACAAAGGCAAGGAGAAAATTGTTGAAGAAGATCCCTCCAATCCTTTTAGAAGCTCTAACAAGAGGGATATTCCATTGGTTTTGTTTCTGAAGCTCTTGAACCAGCCACTTTTTTTGCGCAGCATAGCACATCTTGAACAG.................................................................................................GTCATGGGACTCCTTCAAGTAGTTGTCTATACTGCTGCATCCAAGATGGAGTGTCAGTCTCATTCTGAAGAAACAGTAGACCGTTCTCATAATGAAACAGTAGAGGGTTCTAATAATCCTGATGGCAATGAAACTATGAGTGATATACAGAAAGATCCTGCGTTGCCAGACATAAAGTCCCCTCAAGATGATAGCGGCACTGGTTCTGCCAACCCTGCATCTGATGCCAATGGAAGCACAATCATTCATGACATCTTCTTGCAGCTGCCACATTCTGATTTGCACAATCTTTGCTGTCTTCTTGGTCATGAAGG.......................................................................................................................................ACTCTCAGATAAAGTTTACATGCTTGCGGGTGAGGTGTTGAAGAAGCTAGCCTCAGTTGCTGCTCCCCATCGGAAGTTCTTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E540283" ref_strand="+" ref_description="SGN-E540283 [TUS-60-H16]">
      <seq>ccccgggctgcaggttggaaaataacagggacaaaggcaaggagaaaattgttgaagaagatccctccaatccttttagaagctcgaacaagagggatattccattggttttgcttctgaagctcttgaaccagccactttttttgcgcagcatagcacatcttgaacaggtcatgggactccttcaggtagttgtctatactgctgcatccaagatggagtgtcagtctcattctgaagaaacagtagaccgttctcataatgaaacagtagagggttctaataatcctgatggcaatgaaactatgagtgatatacagaaagatcctgcgctgccagagataaagtcccctcaagatgatagcggcactggttctgccaaccctgcatctgatgccaatggaagcactatcattcatgacatcttcttgcaactgccacattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="27868" stop="29003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28160" g_stop="28331" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28332" i_stop="28428" i_length="97">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28429" g_stop="28703" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="445" r_length="275" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E540283" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28160" e_stop="28331"/>
          <exon e_start="28429" e_stop="28703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGATGTGAAGTGTTTGGAAAATAAGAGGGACAAAGGCAAGGAGAAAATTGTTGAAGAAGATCCCTCCAATCCTTTTAGAAGCTCTAACAAGAGGGATATTCCATTGGTTTTGTTTCTGAAGCTCTTGAACCAGCCACTTTTTTTGCGCAGCATAGCACATCTTGAACAGGTAGATTATGGTCAAATGCTTTGATGTTACTGAAATATTTAGGTCTGGCGATAGTTAATTCAGATACATTTGTTGTTTCCTTGAATGTACTGTGTAGGTCATGGGACTCCTTCAAGTAGTTGTCTATACTGCTGCATCCAAGATGGAGTGTCAGTCTCATTCTGAAGAAACAGTAGACCGTTCTCATAATGAAACAGTAGAGGGTTCTAATAATCCTGATGGCAATGAAACTATGAGTGATATACAGAAAGATCCTGCGTTGCCAGACATAAAGTCCCCTCAAGATGATAGCGGCACTGGTTCTGCCAACCCTGCATCTGATGCCAATGGAAGCACAATCATTCATGACATCTTCTTGCAGCTGCCACATTC</genome_strand>
        <mrna_strand>CCCCGGGCTGCAG-G-TTGGAAAATAACAGGGACAAAGGCAAGGAGAAAATTGTTGAAGAAGATCCCTCCAATCCTTTTAGAAGCTCGAACAAGAGGGATATTCCATTGGTTTTGCTTCTGAAGCTCTTGAACCAGCCACTTTTTTTGCGCAGCATAGCACATCTTGAACAG.................................................................................................GTCATGGGACTCCTTCAGGTAGTTGTCTATACTGCTGCATCCAAGATGGAGTGTCAGTCTCATTCTGAAGAAACAGTAGACCGTTCTCATAATGAAACAGTAGAGGGTTCTAATAATCCTGATGGCAATGAAACTATGAGTGATATACAGAAAGATCCTGCGCTGCCAGAGATAAAGTCCCCTCAAGATGATAGCGGCACTGGTTCTGCCAACCCTGCATCTGATGCCAATGGAAGCACTATCATTCATGACATCTTCTTGCAACTGCCACATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E540276" ref_strand="+" ref_description="SGN-E540276 [TUS-60-H12]">
      <seq>ttggaaaataagagggacaaaggcaaggagaaaattgttgaagaagatccctccaatccttttagaagctctaacaagagggatattccattggttttgtttctgaagctcttgaaccagccactttttttgcgcagcatagcacatcttgaacaggtcatgggactccttcaagtagttgtctatactgctgcatccaagatggagtgtcagtctcattctgaagaaacagtagaccgttctcataatgaaacagtagagggttctaataatcctgatggcaatgaaactatgagtgatatacagaaagatcctgcgttgccagacataaagtcccctcaagatgatagcggcactggttctgccaaccctgcatctgatgccaatggaagcacaatcattcatgacatcttcttgcagctgccacattctgatttgcacaatctttgctgtcttcttggtcatgaaggactctcagataaagtttacatgcttgcgggtgaggtgttgaagaagctagcctcagttgctgctccccatcggaagttcttcatttctgaactttcagagttgactcaaaggctgagcaagtcagctgtggaagagcttatcacacttaagaatacacacatgctgggattgagcgctggatctatggctggagctgcggtccttcgtgtactacagactcttagttcactaagtacagcttctgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="27876" stop="29426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28176" g_stop="28331" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28332" i_stop="28428" i_length="97">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28429" g_stop="28742" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="470" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28743" i_stop="28877" i_length="135">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.271" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28878" g_stop="29126" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="719" r_length="249" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E540276" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28176" e_stop="28331"/>
          <exon e_start="28429" e_stop="28742"/>
          <exon e_start="28878" e_stop="29126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAAAATAAGAGGGACAAAGGCAAGGAGAAAATTGTTGAAGAAGATCCCTCCAATCCTTTTAGAAGCTCTAACAAGAGGGATATTCCATTGGTTTTGTTTCTGAAGCTCTTGAACCAGCCACTTTTTTTGCGCAGCATAGCACATCTTGAACAGGTAGATTATGGTCAAATGCTTTGATGTTACTGAAATATTTAGGTCTGGCGATAGTTAATTCAGATACATTTGTTGTTTCCTTGAATGTACTGTGTAGGTCATGGGACTCCTTCAAGTAGTTGTCTATACTGCTGCATCCAAGATGGAGTGTCAGTCTCATTCTGAAGAAACAGTAGACCGTTCTCATAATGAAACAGTAGAGGGTTCTAATAATCCTGATGGCAATGAAACTATGAGTGATATACAGAAAGATCCTGCGTTGCCAGACATAAAGTCCCCTCAAGATGATAGCGGCACTGGTTCTGCCAACCCTGCATCTGATGCCAATGGAAGCACAATCATTCATGACATCTTCTTGCAGCTGCCACATTCTGATTTGCACAATCTTTGCTGTCTTCTTGGTCATGAAGGGTATTTTTCTATTTAAATTGCTGTATCTTTTCATTTCCCGTTCCTTGATTTCCCATTTTGGTTCATCTTTCTTCTTCACTTCTGAAAGACAAATGTTGTGTTGCAACTACCTGACCTCTAGTGTATGTCGTTTAGACTCTCAGATAAAGTTTACATGCTTGCGGGTGAGGTGTTGAAGAAGCTAGCCTCAGTTGCTGCTCCCCATCGGAAGTTCTTCATTTCTGAACTTTCAGAGTTGACTCAAAGGCTGAGCAAGTCAGCTGTGGAAGAGCTTATCACACTTAAGAATACACACATGCTGGGATTGAGCGCTGGATCTATGGCTGGAGCTGCGGTCCTTCGTGTACTACAGACTCTTAGTTCACTAAGTACAGCTTCTGCTGA</genome_strand>
        <mrna_strand>TTGGAAAATAAGAGGGACAAAGGCAAGGAGAAAATTGTTGAAGAAGATCCCTCCAATCCTTTTAGAAGCTCTAACAAGAGGGATATTCCATTGGTTTTGTTTCTGAAGCTCTTGAACCAGCCACTTTTTTTGCGCAGCATAGCACATCTTGAACAG.................................................................................................GTCATGGGACTCCTTCAAGTAGTTGTCTATACTGCTGCATCCAAGATGGAGTGTCAGTCTCATTCTGAAGAAACAGTAGACCGTTCTCATAATGAAACAGTAGAGGGTTCTAATAATCCTGATGGCAATGAAACTATGAGTGATATACAGAAAGATCCTGCGTTGCCAGACATAAAGTCCCCTCAAGATGATAGCGGCACTGGTTCTGCCAACCCTGCATCTGATGCCAATGGAAGCACAATCATTCATGACATCTTCTTGCAGCTGCCACATTCTGATTTGCACAATCTTTGCTGTCTTCTTGGTCATGAAGG.......................................................................................................................................ACTCTCAGATAAAGTTTACATGCTTGCGGGTGAGGTGTTGAAGAAGCTAGCCTCAGTTGCTGCTCCCCATCGGAAGTTCTTCATTTCTGAACTTTCAGAGTTGACTCAAAGGCTGAGCAAGTCAGCTGTGGAAGAGCTTATCACACTTAAGAATACACACATGCTGGGATTGAGCGCTGGATCTATGGCTGGAGCTGCGGTCCTTCGTGTACTACAGACTCTTAGTTCACTAAGTACAGCTTCTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E286102" ref_strand="+" ref_description="SGN-E286102 [cLES-13-O22]">
      <seq>tggaaaataagagggacaaaggcaaggagaaaattgttgaagaagatccctccaatccttttagaagctctaacaagagggatattccattggttttgtttctgaagctcttgaaccagccactttttttgcgcagcatagcacatcttgaacaggtcatgggactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="27877" stop="28633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28177" g_stop="28331" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28332" i_stop="28428" i_length="97">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28429" g_stop="28440" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="167" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E286102" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>167</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28177" e_stop="28331"/>
          <exon e_start="28429" e_stop="28440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAAATAAGAGGGACAAAGGCAAGGAGAAAATTGTTGAAGAAGATCCCTCCAATCCTTTTAGAAGCTCTAACAAGAGGGATATTCCATTGGTTTTGTTTCTGAAGCTCTTGAACCAGCCACTTTTTTTGCGCAGCATAGCACATCTTGAACAGGTAGATTATGGTCAAATGCTTTGATGTTACTGAAATATTTAGGTCTGGCGATAGTTAATTCAGATACATTTGTTGTTTCCTTGAATGTACTGTGTAGGTCATGGGACTC</genome_strand>
        <mrna_strand>TGGAAAATAAGAGGGACAAAGGCAAGGAGAAAATTGTTGAAGAAGATCCCTCCAATCCTTTTAGAAGCTCTAACAAGAGGGATATTCCATTGGTTTTGTTTCTGAAGCTCTTGAACCAGCCACTTTTTTTGCGCAGCATAGCACATCTTGAACAG.................................................................................................GTCATGGGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E736587" ref_strand="+" ref_description="SGN-E736587 [LC06BD10]">
      <seq>ctgaagctcttgaaccagccactttttttgcgcagcatagcacatcttgaacaggtcatgggactccttcaagtagttgtctatactgctgcatccaagatggagtgtcagtctcattctgaagaaacagtagaccgttctcataatgaaacagtagagggttctaataatcctgatggcaatgaaactatgagtgatatacagaaagatcctgcgttgccagacataaagtcccctcaagatgatagcggcactggttctgccaaccctgcatctgatgccaatggaagcacaatcattcatgacatcttcttgcagctgccacattctgatttgcacaatctttgctgtcttcttggtcatgaaggactctcagataaagtttacatgcttgcgggtgaggtgttgaagaagctagcctcagttgctgctccccatcggaagttcttcatttctgaactttcagagttgactcaaaggctgagcaagtcagctgtggaagagcttatcacacttaagaatacacacatgctgggattgagcgctggatctatggctggagctgcggtccttcgtgtactacagactcttagttcactaagtacagcttctgctgatggcaatacagacacatctatggaggaagaacatgatgagcataacatcatgtggaagttaaatgttgcactagaacctttgtgggaaggcctgagtgaatgcataggcaccatggagttagagctcacccagagcacttcttcttcagttatgtcaagtaccaacactggggagcatataaatgaagccggtgcttcatctgtatcttctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="27978" stop="29640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28278" g_stop="28331" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28332" i_stop="28428" i_length="97">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28429" g_stop="28742" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="368" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28743" i_stop="28877" i_length="135">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.271" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28878" g_stop="29340" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="831" r_length="463" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E736587" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28278" e_stop="28331"/>
          <exon e_start="28429" e_stop="28742"/>
          <exon e_start="28878" e_stop="29340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGCTCTTGAACCAGCCACTTTTTTTGCGCAGCATAGCACATCTTGAACAGGTAGATTATGGTCAAATGCTTTGATGTTACTGAAATATTTAGGTCTGGCGATAGTTAATTCAGATACATTTGTTGTTTCCTTGAATGTACTGTGTAGGTCATGGGACTCCTTCAAGTAGTTGTCTATACTGCTGCATCCAAGATGGAGTGTCAGTCTCATTCTGAAGAAACAGTAGACCGTTCTCATAATGAAACAGTAGAGGGTTCTAATAATCCTGATGGCAATGAAACTATGAGTGATATACAGAAAGATCCTGCGTTGCCAGACATAAAGTCCCCTCAAGATGATAGCGGCACTGGTTCTGCCAACCCTGCATCTGATGCCAATGGAAGCACAATCATTCATGACATCTTCTTGCAGCTGCCACATTCTGATTTGCACAATCTTTGCTGTCTTCTTGGTCATGAAGGGTATTTTTCTATTTAAATTGCTGTATCTTTTCATTTCCCGTTCCTTGATTTCCCATTTTGGTTCATCTTTCTTCTTCACTTCTGAAAGACAAATGTTGTGTTGCAACTACCTGACCTCTAGTGTATGTCGTTTAGACTCTCAGATAAAGTTTACATGCTTGCGGGTGAGGTGTTGAAGAAGCTAGCCTCAGTTGCTGCTCCCCATCGGAAGTTCTTCATTTCTGAACTTTCAGAGTTGACTCAAAGGCTGAGCAAGTCAGCTGTGGAAGAGCTTATCACACTTAAGAATACACACATGCTGGGATTGAGCGCTGGATCTATGGCTGGAGCTGCGGTCCTTCGTGTACTACAGACTCTTAGTTCACTAAGTACAGCTTCTGCTGATGGCAATACAGACACATCTATGGAGGAAGAACATGATGAGCATAACATCATGTGGAAGTTAAATGTTGCACTAGAACCTTTGTGGGAAGGCCTGAGTGAATGCATAGGCACCATGGAGTTAGAGCTCACCCAGAGCACTTCTTCTTCAGTTATGTCAAGTACCAACACTGGGGAGCATATAAATGAAGCCGGTGCTTCATCTGTATCTTCTCCA</genome_strand>
        <mrna_strand>CTGAAGCTCTTGAACCAGCCACTTTTTTTGCGCAGCATAGCACATCTTGAACAG.................................................................................................GTCATGGGACTCCTTCAAGTAGTTGTCTATACTGCTGCATCCAAGATGGAGTGTCAGTCTCATTCTGAAGAAACAGTAGACCGTTCTCATAATGAAACAGTAGAGGGTTCTAATAATCCTGATGGCAATGAAACTATGAGTGATATACAGAAAGATCCTGCGTTGCCAGACATAAAGTCCCCTCAAGATGATAGCGGCACTGGTTCTGCCAACCCTGCATCTGATGCCAATGGAAGCACAATCATTCATGACATCTTCTTGCAGCTGCCACATTCTGATTTGCACAATCTTTGCTGTCTTCTTGGTCATGAAGG.......................................................................................................................................ACTCTCAGATAAAGTTTACATGCTTGCGGGTGAGGTGTTGAAGAAGCTAGCCTCAGTTGCTGCTCCCCATCGGAAGTTCTTCATTTCTGAACTTTCAGAGTTGACTCAAAGGCTGAGCAAGTCAGCTGTGGAAGAGCTTATCACACTTAAGAATACACACATGCTGGGATTGAGCGCTGGATCTATGGCTGGAGCTGCGGTCCTTCGTGTACTACAGACTCTTAGTTCACTAAGTACAGCTTCTGCTGATGGCAATACAGACACATCTATGGAGGAAGAACATGATGAGCATAACATCATGTGGAAGTTAAATGTTGCACTAGAACCTTTGTGGGAAGGCCTGAGTGAATGCATAGGCACCATGGAGTTAGAGCTCACCCAGAGCACTTCTTCTTCAGTTATGTCAAGTACCAACACTGGGGAGCATATAAATGAAGCCGGTGCTTCATCTGTATCTTCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E540274" ref_strand="+" ref_description="SGN-E540274 [TUS-60-H12]">
      <seq>cccctcgagcgaaaaaagctcttttattgtcaaatcaatgagccgtggggctttcagcatcacacaaagtgatttctccagtaagccggggttctgcctgacaaaagcgttaagcaagcgcctatgcttttccgcaaatcttacaaatgttacagcaccatctactcttttatgtgaatcaccaacagacttggaggacaacttgactgaagtaccggctaactctttcacttctcttgcagttgcattcatatgatcttgctgcataatagagatgtttgcctgaagcttctcacacagaacaaagaaagcctcaataaaaggtaacagacgctgagttccagggggcaatggagaagatacagatgaagcaccggcttcatttatatgctccccagtgttggtacttgacataactgaagaagaagtgctctgggtgagctctaactccatggtgcctatgcattcactcaggccttcccacaaaggttctagtgcaacatttaacttccacatgatgttatgctcatcatgttcttcctccatagatgtgtctgtattgccatcagcagaagctgtacttagtgaactaagagtctgtagtacacgaaggaccgcagctccagccatagatccagcgctcaatcccagcatgtgtgtattcttaagtgtgataagctcttccacagctgacttgctcagcctttgagtcaactctgaaagttcagaaatgaagaacttccgatggggagcagcaactgangctagcttcttcacacctcacccgcaagcatgtaaactttatctgagagtccttcatgacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="29990" stop="28569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29693" g_stop="28867" g_length="827"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="825" r_length="825" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E540274" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29693" e_stop="28867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCGAGCGAAAATAAGCTCTTTTATTGTCAAAATCAATGAGCCGTGGGGCTTTCAGCATCACACAAAGTGATTTCTCCAGTAAGCCGGGGTTCTGCCTGACAAAAGCGTTAAGCAAGCGCCTATGCTTTTCCGCAAATCTTACAAATGTTACAGCACCATCTACTCTTTTATGTGAATCACCAACAGACTTGGAGGACAACTTGACTGAAGTACCGGCTAACTCTTTCACTTCTCTTGCAGTTGCATTCATATGATCTTGCTGCATAATAGAGATGTTTGCCTGAAGCTTCTCACACAGAACAAAGAAAGCCTCAATAAAAGGTAACAGACGCTGAGTTCCAGGGGGCAATGGAGAAGATACAGATGAAGCACCGGCTTCATTTATATGCTCCCCAGTGTTGGTACTTGACATAACTGAAGAAGAAGTGCTCTGGGTGAGCTCTAACTCCATGGTGCCTATGCATTCACTCAGGCCTTCCCACAAAGGTTCTAGTGCAACATTTAACTTCCACATGATGTTATGCTCATCATGTTCTTCCTCCATAGATGTGTCTGTATTGCCATCAGCAGAAGCTGTACTTAGTGAACTAAGAGTCTGTAGTACACGAAGGACCGCAGCTCCAGCCATAGATCCAGCGCTCAATCCCAGCATGTGTGTATTCTTAAGTGTGATAAGCTCTTCCACAGCTGACTTGCTCAGCCTTTGAGTCAACTCTGAAAGTTCAGAAATGAAGAACTTCCGATGGGGAGCAGCAACTGAGGCTAGCTTCTTCAACACCTCACCCGCAAGCATGTAAACTTTATCTGAGAGT-CTAAACGACAT</genome_strand>
        <mrna_strand>CCCCTCGAGCGAAAA-AAGCTCTTTTATTGTC-AAATCAATGAGCCGTGGGGCTTTCAGCATCACACAAAGTGATTTCTCCAGTAAGCCGGGGTTCTGCCTGACAAAAGCGTTAAGCAAGCGCCTATGCTTTTCCGCAAATCTTACAAATGTTACAGCACCATCTACTCTTTTATGTGAATCACCAACAGACTTGGAGGACAACTTGACTGAAGTACCGGCTAACTCTTTCACTTCTCTTGCAGTTGCATTCATATGATCTTGCTGCATAATAGAGATGTTTGCCTGAAGCTTCTCACACAGAACAAAGAAAGCCTCAATAAAAGGTAACAGACGCTGAGTTCCAGGGGGCAATGGAGAAGATACAGATGAAGCACCGGCTTCATTTATATGCTCCCCAGTGTTGGTACTTGACATAACTGAAGAAGAAGTGCTCTGGGTGAGCTCTAACTCCATGGTGCCTATGCATTCACTCAGGCCTTCCCACAAAGGTTCTAGTGCAACATTTAACTTCCACATGATGTTATGCTCATCATGTTCTTCCTCCATAGATGTGTCTGTATTGCCATCAGCAGAAGCTGTACTTAGTGAACTAAGAGTCTGTAGTACACGAAGGACCGCAGCTCCAGCCATAGATCCAGCGCTCAATCCCAGCATGTGTGTATTCTTAAGTGTGATAAGCTCTTCCACAGCTGACTTGCTCAGCCTTTGAGTCAACTCTGAAAGTTCAGAAATGAAGAACTTCCGATGGGGAGCAGCAACTGANGCTAGCTTCTTC-ACACCTCACCCGCAAGCATGTAAACTTTATCTGAGAGTCCTTCATGACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E548359" ref_strand="+" ref_description="SGN-E548359 [TUS-60-H16]">
      <seq>caagcgcctatgcttttccgcaaatcttacagatgttacagcaccatctactcttttatgtgaatcacctacagacttggaggacaacttgactgaagtaccggctaactctttcacttctcttgcagttgcattcatatgatcttgctgcataatagagatgtttgcctgaagcttctcacacataacaaagaaagcctcaataaaaggtaactgacgctgagttctagggggcaatggagaagagacagatgaagcaccggcttcatttatatgctccccagtgttggtacttgacataactgaagaagaagtgctctgggtgagctctaactccatggtgcctatgcattcactcaggccttcccacaaaggttctagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="29877" stop="28895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29577" g_stop="29195" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E548359" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29577" e_stop="29195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCGCCTATGCTTTTCCGCAAATCTTACAAATGTTACAGCACCATCTACTCTTTTATGTGAATCACCAACAGACTTGGAGGACAACTTGACTGAAGTACCGGCTAACTCTTTCACTTCTCTTGCAGTTGCATTCATATGATCTTGCTGCATAATAGAGATGTTTGCCTGAAGCTTCTCACACAGAACAAAGAAAGCCTCAATAAAAGGTAACAGACGCTGAGTTCCAGGGGGCAATGGAGAAGATACAGATGAAGCACCGGCTTCATTTATATGCTCCCCAGTGTTGGTACTTGACATAACTGAAGAAGAAGTGCTCTGGGTGAGCTCTAACTCCATGGTGCCTATGCATTCACTCAGGCCTTCCCACAAAGGTTCTAGTG</genome_strand>
        <mrna_strand>CAAGCGCCTATGCTTTTCCGCAAATCTTACAGATGTTACAGCACCATCTACTCTTTTATGTGAATCACCTACAGACTTGGAGGACAACTTGACTGAAGTACCGGCTAACTCTTTCACTTCTCTTGCAGTTGCATTCATATGATCTTGCTGCATAATAGAGATGTTTGCCTGAAGCTTCTCACACATAACAAAGAAAGCCTCAATAAAAGGTAACTGACGCTGAGTTCTAGGGGGCAATGGAGAAGAGACAGATGAAGCACCGGCTTCATTTATATGCTCCCCAGTGTTGGTACTTGACATAACTGAAGAAGAAGTGCTCTGGGTGAGCTCTAACTCCATGGTGCCTATGCATTCACTCAGGCCTTCCCACAAAGGTTCTAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E701829" ref_strand="+" ref_description="SGN-E701829 [FA17AC04]">
      <seq>gagtgaatgcataggcaccatggagttagagctcacccagagcacttcttcttcagttatgtcaagtaccaacactggggagcatataaatgaagccggtgcttcatctgtatcttctccattgccccctggaactcagcgtctgttaccttttattgaggctttctttgttctgtgtgagaagcttcaggcaaacatctctattatgcagcaagatcatatgaatgcaactgcaagagaagtgaaagagttagccggtacttcagtcaagttgtcctccaagtctgttggtgattcacataaaagagtagatggtgctgtaacatttgtaagatttgcggaaaagcataggcgcttgcttaacgcttttgtcaggcagaaccccggcttactggagaaatcactttgtgtgatgctgaaagccccacggctcattgattttgacaataaaagagcttattttcgctcgagaataaggcagcagcatgaacagcacctctcaggtcctctgcgaattagcgttcggcgggcttatgtgttggaggattcttataatcagttgcgtatgcgacccaatcaagacctgaaaggacggttaaatgtgcattttcaaggtgaagagggtattgatgctggtggtttgacgagagagtggtatcaattgctatcaagggtcatatttgacaaaggagctttgctgtttacgactgttgggaataatgcaactttccaacctaacccaaactctgtttatcaaactgaacatctctcatacttncaatttgtaggccgtgtggttgctaaagcactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="28920" stop="30426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29220" g_stop="30015" g_length="796"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="796" r_length="796" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30016" i_stop="30109" i_length="94">
            <donor d_prob="0.561" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30110" g_stop="30126" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="797" r_stop="813" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E701829" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29220" e_stop="30015"/>
          <exon e_start="30110" e_stop="30126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGAATGCATAGGCACCATGGAGTTAGAGCTCACCCAGAGCACTTCTTCTTCAGTTATGTCAAGTACCAACACTGGGGAGCATATAAATGAAGCCGGTGCTTCATCTGTATCTTCTCCATTGCCCCCTGGAACTCAGCGTCTGTTACCTTTTATTGAGGCTTTCTTTGTTCTGTGTGAGAAGCTTCAGGCAAACATCTCTATTATGCAGCAAGATCATATGAATGCAACTGCAAGAGAAGTGAAAGAGTTAGCCGGTACTTCAGTCAAGTTGTCCTCCAAGTCTGTTGGTGATTCACATAAAAGAGTAGATGGTGCTGTAACATTTGTAAGATTTGCGGAAAAGCATAGGCGCTTGCTTAACGCTTTTGTCAGGCAGAACCCCGGCTTACTGGAGAAATCACTTTGTGTGATGCTGAAAGCCCCACGGCTCATTGATTTTGACAATAAAAGAGCTTATTTTCGCTCGAGAATAAGGCAGCAGCATGAACAGCACCTCTCAGGTCCTCTGCGAATTAGCGTTCGGCGGGCTTATGTGTTGGAGGATTCTTATAATCAGTTGCGTATGCGACCCAATCAAGACCTGAAAGGACGGTTAAATGTGCATTTTCAAGGTGAAGAGGGTATTGATGCTGGTGGTTTGACGAGAGAGTGGTATCAATTGCTATCAAGGGTCATATTTGACAAAGGAGCTTTGCTGTTTACGACTGTTGGGAATAATGCAACTTTCCAACCTAACCCAAACTCTGTTTATCAAACTGAACATCTCTCATACTTCAAATTTGTAGGCCGTGTGGTAGGACTTCTGGAACTAATTTTAAAATCCAAGCCATAATTTTATCCTTGTTTCACATCTTAATCTCAAGCCTTTGATGTGATACTCTTTATAGGTTGCTAAAGCACTATT</genome_strand>
        <mrna_strand>GAGTGAATGCATAGGCACCATGGAGTTAGAGCTCACCCAGAGCACTTCTTCTTCAGTTATGTCAAGTACCAACACTGGGGAGCATATAAATGAAGCCGGTGCTTCATCTGTATCTTCTCCATTGCCCCCTGGAACTCAGCGTCTGTTACCTTTTATTGAGGCTTTCTTTGTTCTGTGTGAGAAGCTTCAGGCAAACATCTCTATTATGCAGCAAGATCATATGAATGCAACTGCAAGAGAAGTGAAAGAGTTAGCCGGTACTTCAGTCAAGTTGTCCTCCAAGTCTGTTGGTGATTCACATAAAAGAGTAGATGGTGCTGTAACATTTGTAAGATTTGCGGAAAAGCATAGGCGCTTGCTTAACGCTTTTGTCAGGCAGAACCCCGGCTTACTGGAGAAATCACTTTGTGTGATGCTGAAAGCCCCACGGCTCATTGATTTTGACAATAAAAGAGCTTATTTTCGCTCGAGAATAAGGCAGCAGCATGAACAGCACCTCTCAGGTCCTCTGCGAATTAGCGTTCGGCGGGCTTATGTGTTGGAGGATTCTTATAATCAGTTGCGTATGCGACCCAATCAAGACCTGAAAGGACGGTTAAATGTGCATTTTCAAGGTGAAGAGGGTATTGATGCTGGTGGTTTGACGAGAGAGTGGTATCAATTGCTATCAAGGGTCATATTTGACAAAGGAGCTTTGCTGTTTACGACTGTTGGGAATAATGCAACTTTCCAACCTAACCCAAACTCTGTTTATCAAACTGAACATCTCTCATACTTNCAATTTGTAGGCCGTGTG..............................................................................................GTTGCTAAAGCACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E201873" ref_strand="+" ref_description="SGN-E201873 [cLEC-18-A3]">
      <seq>taaagcactatttgacgggcagttgctggatgttcattttacccggtcattctacaaacatatccttggtgtgaaggtcacatatcatgatatagaggctgtcgatcctgattactataagaacttgaagtggatgctggagaatgatgtgagtgatataccacatttgacttttagcatggatgcagatgaggaaaaactcattctttatgagaaaacagaggttactgattatgagcttaaacctggaggaagaaatataagggtcacagaagagacaaagcacgaatatgttgatctcgttgctgaccatattctgacaaatgctattcgccctcaaataaatgcattccttgaaggtttcagtgaatcggtaccacgtgaacttatctccattttcaatgataaggagcttgcacttttgataagtggtctaccagaaattgacatggaagatctgaaggccaacactgaatatactggatataccacggcatctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="29815" stop="31238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30115" g_stop="30256" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30257" i_stop="30344" i_length="88">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30345" g_stop="30425" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="223" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30426" i_stop="30576" i_length="151">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30577" g_stop="30802" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="449" r_length="226" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30803" i_stop="30885" i_length="83">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30886" g_stop="30938" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="502" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E201873" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30115" e_stop="30256"/>
          <exon e_start="30345" e_stop="30425"/>
          <exon e_start="30577" e_stop="30802"/>
          <exon e_start="30886" e_stop="30938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGCACTATTTGACGGGCAGTTGCTGGATGTTCATTTTACCCGGTCATTCTACAAACATATCCTTGGTGTGAAGGTCACATATCATGATATAGAGGCTGTCGATCCTGATTACTATAAGAACTTGAAGTGGATGCTGGAGGTGAGATTATATTAAGATGCAGTAATTTGTAACTGATATACAATTTCATCTATGGAACTTCTGATTGTTTCTTGATTTCCTATACCAGAATGATGTGAGTGATATACCAGATTTGACTTTTAGCATGGATGCAGATGAGGAAAAACTCATTCTTTATGAGAAAACAGAGGTCGGTATACATAATGTTTCGACCCCCCCCCCCCCCCCAAAAAAAAAGATAAAATAAAAATGAAAAAAGCTAAATGAGTAACAGCAAGTCATATATTGCTCTGTTCAGGTGATACCTAAAGTAACTTTTTTTTTAATCTTGCATGATCAAGGTTACTGATTATGAGCTTAAACCTGGAGGAAGAAATATAAGGGTCACAGAAGAGACAAAGCACGAATATGTTGATCTCGTTGCTGACCATATTCTGACAAATGCTATTCGCCCTCAAATAAATGCATTCCTTGAAGGTTTCAGTGAATTGGTACCACGTGAACTTATCTCCATTTTCAATGATAAGGAGCTTGAACTTTTGATAAGTGGTCTACCAGAAATTGACAGTAAGTAGACATGCTTCTCCACGATTGCAGTGTATACACCATGTTGTTTCCTATGAAGCTTCTTATAATGATTCTATATGCAGTGGAAGATCTGAAGGCCAACACTGAATATACTGGATATACCACGGCATCTACT</genome_strand>
        <mrna_strand>TAAAGCACTATTTGACGGGCAGTTGCTGGATGTTCATTTTACCCGGTCATTCTACAAACATATCCTTGGTGTGAAGGTCACATATCATGATATAGAGGCTGTCGATCCTGATTACTATAAGAACTTGAAGTGGATGCTGGAG........................................................................................AATGATGTGAGTGATATACCACATTTGACTTTTAGCATGGATGCAGATGAGGAAAAACTCATTCTTTATGAGAAAACAGAG.......................................................................................................................................................GTTACTGATTATGAGCTTAAACCTGGAGGAAGAAATATAAGGGTCACAGAAGAGACAAAGCACGAATATGTTGATCTCGTTGCTGACCATATTCTGACAAATGCTATTCGCCCTCAAATAAATGCATTCCTTGAAGGTTTCAGTGAATCGGTACCACGTGAACTTATCTCCATTTTCAATGATAAGGAGCTTGCACTTTTGATAAGTGGTCTACCAGAAATTGACA...................................................................................TGGAAGATCTGAAGGCCAACACTGAATATACTGGATATACCACGGCATCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E245596" ref_strand="+" ref_description="SGN-E245596 [cLEF-43-D21]">
      <seq>ggatataccacggcatctactgctattcagtggttttgggaggtcgttaaaggttttagcaaggaagacatggcaagatttcttcaatttgtgaccggcacatccaaggttcctttggagggtttcaaagcattgcaagggatctctggccctcagagatttcagattcacaaagcttatggagctcctgagaggctcccatctgcacatacctgcttcaaccaacttgaccttccggagtatacttccaaagaacaacttcaagaacgtttgcttttggctatccatgaggctagtgaaggatttggttttggttgagacaagcttaccttgtgcagatttcctgaaaattgcatatatttgatcaccctgtgattgccatgtaaatactggctgatcgatatcaactgcacaagatagatttggagtggtatttcttagaaatttgagtccatgcagagcctgcctcaaggatgtgtaggtagttggccacaccactctggtcagtttagtatcttgagggtagtgagttatgcattacaagtggtgaggagctctgttattttgttgttccttccattgcgataagacactcctacagccatccccgtgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="30618" stop="33047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30918" g_stop="31025" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31026" i_stop="31463" i_length="438">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31464" g_stop="31570" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="215" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31571" i_stop="31700" i_length="130">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31701" g_stop="31873" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="388" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31874" i_stop="32520" i_length="647">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32521" g_stop="32747" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="615" r_length="227" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E245596" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30918" e_stop="31025"/>
          <exon e_start="31464" e_stop="31570"/>
          <exon e_start="31701" e_stop="31873"/>
          <exon e_start="32521" e_stop="32747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATATACCACGGCATCTACTGCTATTCAGTGGTTTTGGGAGGTCGTTAAAGGTTTTAGCAAGGAAGACATGGCAAGATTTCTTCAATTTGTGACCGGCACATCCAAGGTTAGTAGATATCATTGTACCCACAGGTTTTTTTGTCTCATAGAGTATCTGCTAAATGGCGATATGTCTTGGAACAAACTTACAAGAATTTCTTTCTCCCTCCTTCTCCACCCTAGTAAAGATCAATTTTGTACCAGAGTCGGTTTTCCTTGAGAAAAGATCCTCTTCTCTTCGCAAACCAAATATCCAGGTGCTCAAAATTCTGTTATGTGTTGCTGAATTCTGCTAATTTGTGATTGCAGATTGATGTTTGTTACCCCAGTATATCTCATGTTCAATCATTTAAAAGAAGACTTCACTTTCCCTTTGTTTAGTGGTTCAGGATTCTGTATGCCCTTTGGTTGTTTTACATAGTATAGTGCATGCACATTCCCCTGTAAATGTCTGTGCCTTGTGGATTTCTTCGTTGTGATTAATTGTGGGTGCTGTTGGCCTTAGGTTCCTTTGGAGGGTTTCAAAGCATTGCAAGGGATCTCTGGCCCTCAGAGATTTCAGATTCACAAAGCTTATGGAGCTCCTGAGAGGCTCCCATCTGCACATACCTGGTTGGTGCTTGTATATCAGACTTATTATATGCTTATCAGTAGTTCACTCATAATTAAGTAGATGCCATCTGGGAGATAGTATGTAGCAAAGCTTTAGTGACCCTTACTGTCATTTGTCTTTTCCTTCCAGCTTCAACCAACTTGACCTTCCGGAGTATACTTCCAAAGAACAACTTCAAGAACGTTTGCTTTTGGCTATCCATGAGGCTAGTGAAGGATTTGGTTTTGGTTGAGACAAGCTTACCTTGTGCAGATTTCCTGAAAATTGCATATATTTGATCACCCTGTGATTGCCATGTAAATGTAAGTATGTCCTCTTTTCATTTTACTTCTCTTGTTTCGCTGTAGTTGGTAACTAAAACCACTCACTTGTTCACTGCTTTGTCAAGTGATGAAAATTCTGCTCTTCAAGTCGAAATTTGTTTCCTTCACCTTCTTTAGATGAGGTTGTTATGATGGTTGTTGAGTGCTTAAATCTTGCTCTACTTTATGGCATGTGATTTGAATTTTCTGTGAGGTGTCTGCAGATTTTGGGTGTCCTATGATAAGCATGATTCTAATAAGTGATTGACGGAAATATGTGACTTTTGTTTCTGCATGTGCTCAAATATTGGCATATTCACTTCTGAAACTTCGACGAAAATATGTGACTTTTGTTTCTACATGTGCTCAAATATTGGCATATTCACGTCTGAAACTTTGACGGAAAGACCATCTGTTTTCTCATCGTCAAATTTCCCTCATTGGGCTGTGTTCTAGTTGCTCTCCTGTCCTGTATTGCTCCACTGAAGTAGTAATAACATATAATTACTGAACCATTGTCGTGCATGCCTAATTTAACATGAATGGTGGTTATCAATTTTTAAGGCTTATAATAGGTTTTCTGCTTGGTTGATTTACTGGTCAATTAACTCGAAAAATGCTGATGAGCTTCACTTTGTCTCATGCAGACTGGCTGATCGATATCAACTGCACAAGATAGATTTGGAGTGGTATTTCTTAGAAATTTGAGTCCATGCAGAGCCTGCCTCAAGGATGTGTAGGTAGTTGGCCACACCACTCTGGTCAGTTTAGTATCTTGAGGGTAGTGAGTTATGCATTACAAGTGGTGAGGAGCTCTGTTATTTTGTTGTTCCTTCCATTGCGATAGGACACTCCTACAGCCATCCCCGTGTAG</genome_strand>
        <mrna_strand>GGATATACCACGGCATCTACTGCTATTCAGTGGTTTTGGGAGGTCGTTAAAGGTTTTAGCAAGGAAGACATGGCAAGATTTCTTCAATTTGTGACCGGCACATCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTTTGGAGGGTTTCAAAGCATTGCAAGGGATCTCTGGCCCTCAGAGATTTCAGATTCACAAAGCTTATGGAGCTCCTGAGAGGCTCCCATCTGCACATACCTG..................................................................................................................................CTTCAACCAACTTGACCTTCCGGAGTATACTTCCAAAGAACAACTTCAAGAACGTTTGCTTTTGGCTATCCATGAGGCTAGTGAAGGATTTGGTTTTGGTTGAGACAAGCTTACCTTGTGCAGATTTCCTGAAAATTGCATATATTTGATCACCCTGTGATTGCCATGTAAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGCTGATCGATATCAACTGCACAAGATAGATTTGGAGTGGTATTTCTTAGAAATTTGAGTCCATGCAGAGCCTGCCTCAAGGATGTGTAGGTAGTTGGCCACACCACTCTGGTCAGTTTAGTATCTTGAGGGTAGTGAGTTATGCATTACAAGTGGTGAGGAGCTCTGTTATTTTGTTGTTCCTTCCATTGCGATAAGACACTCCTACAGCCATCCCCGTGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E373755" ref_strand="-" ref_description="SGN-E373755 [TUS-31-E12]">
      <seq>ttcctttggagggtttcaaagcattgcaagggatctctggccctcagagatttcagattcacaaagcttatggagctcctgataggctcccatctgcacatacctgcttcaaccaacttgaccttccggagtatacttccaaagaacaacttcaagaacgtttgcttttggctatccatgaggctagtgaaggatttggttttggttgagacaagcttaccttgtgcagatttcctgaaaattgcatatatttgatcaccctgtgattgccatgtaaatactggctgatcgatatcaactgcacaagatagatttggagtggtatttcttagaaatttgagtccatgcagagcctgcctcaaggatgtgtaggtagttggccacaccactctggtcagtttagtatcttgagggtagtgagttatgcattacaagtggtgaggagctctgttattttgttgttccttccattgcgataggacactcctacagccatccccgtgtagataagtcggttctctttttgtcagggggtttagtgtaggaggtctacatttattttgggaaatgggtaggttgctaattctttcatgctttacaacctcattagttacctatggtcaccgataactcttacatcaccttataatgctatacttcacatctggtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="31165" stop="33211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31465" g_stop="31570" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31571" i_stop="31700" i_length="130">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31701" g_stop="31873" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="279" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31874" i_stop="32520" i_length="647">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32521" g_stop="32910" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="669" r_length="390" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="670" polyA_stop="681"/>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E373755" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373755" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="31465" e_stop="31570"/>
          <exon e_start="31701" e_stop="31873"/>
          <exon e_start="32521" e_stop="32910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTTGGAGGGTTTCAAAGCATTGCAAGGGATCTCTGGCCCTCAGAGATTTCAGATTCACAAAGCTTATGGAGCTCCTGAGAGGCTCCCATCTGCACATACCTGGTTGGTGCTTGTATATCAGACTTATTATATGCTTATCAGTAGTTCACTCATAATTAAGTAGATGCCATCTGGGAGATAGTATGTAGCAAAGCTTTAGTGACCCTTACTGTCATTTGTCTTTTCCTTCCAGCTTCAACCAACTTGACCTTCCGGAGTATACTTCCAAAGAACAACTTCAAGAACGTTTGCTTTTGGCTATCCATGAGGCTAGTGAAGGATTTGGTTTTGGTTGAGACAAGCTTACCTTGTGCAGATTTCCTGAAAATTGCATATATTTGATCACCCTGTGATTGCCATGTAAATGTAAGTATGTCCTCTTTTCATTTTACTTCTCTTGTTTCGCTGTAGTTGGTAACTAAAACCACTCACTTGTTCACTGCTTTGTCAAGTGATGAAAATTCTGCTCTTCAAGTCGAAATTTGTTTCCTTCACCTTCTTTAGATGAGGTTGTTATGATGGTTGTTGAGTGCTTAAATCTTGCTCTACTTTATGGCATGTGATTTGAATTTTCTGTGAGGTGTCTGCAGATTTTGGGTGTCCTATGATAAGCATGATTCTAATAAGTGATTGACGGAAATATGTGACTTTTGTTTCTGCATGTGCTCAAATATTGGCATATTCACTTCTGAAACTTCGACGAAAATATGTGACTTTTGTTTCTACATGTGCTCAAATATTGGCATATTCACGTCTGAAACTTTGACGGAAAGACCATCTGTTTTCTCATCGTCAAATTTCCCTCATTGGGCTGTGTTCTAGTTGCTCTCCTGTCCTGTATTGCTCCACTGAAGTAGTAATAACATATAATTACTGAACCATTGTCGTGCATGCCTAATTTAACATGAATGGTGGTTATCAATTTTTAAGGCTTATAATAGGTTTTCTGCTTGGTTGATTTACTGGTCAATTAACTCGAAAAATGCTGATGAGCTTCACTTTGTCTCATGCAGACTGGCTGATCGATATCAACTGCACAAGATAGATTTGGAGTGGTATTTCTTAGAAATTTGAGTCCATGCAGAGCCTGCCTCAAGGATGTGTAGGTAGTTGGCCACACCACTCTGGTCAGTTTAGTATCTTGAGGGTAGTGAGTTATGCATTACAAGTGGTGAGGAGCTCTGTTATTTTGTTGTTCCTTCCATTGCGATAGGACACTCCTACAGCCATCCCCGTGTAGATAAGTCGGTTCTCTTTTTGTCAGGGGGTTTAGTGTAGGAGGTCTACATTTATTTTGGGAAATGGGTAGGTTGCTAATTCTTTCATGCTTTACAACCTCATTAGTTACCTATGGTCACCGATAACTCTTACATCACCTTATAATGCTATACTTCACATCTGGT</genome_strand>
        <mrna_strand>TTCCTTTGGAGGGTTTCAAAGCATTGCAAGGGATCTCTGGCCCTCAGAGATTTCAGATTCACAAAGCTTATGGAGCTCCTGATAGGCTCCCATCTGCACATACCTG..................................................................................................................................CTTCAACCAACTTGACCTTCCGGAGTATACTTCCAAAGAACAACTTCAAGAACGTTTGCTTTTGGCTATCCATGAGGCTAGTGAAGGATTTGGTTTTGGTTGAGACAAGCTTACCTTGTGCAGATTTCCTGAAAATTGCATATATTTGATCACCCTGTGATTGCCATGTAAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGCTGATCGATATCAACTGCACAAGATAGATTTGGAGTGGTATTTCTTAGAAATTTGAGTCCATGCAGAGCCTGCCTCAAGGATGTGTAGGTAGTTGGCCACACCACTCTGGTCAGTTTAGTATCTTGAGGGTAGTGAGTTATGCATTACAAGTGGTGAGGAGCTCTGTTATTTTGTTGTTCCTTCCATTGCGATAGGACACTCCTACAGCCATCCCCGTGTAGATAAGTCGGTTCTCTTTTTGTCAGGGGGTTTAGTGTAGGAGGTCTACATTTATTTTGGGAAATGGGTAGGTTGCTAATTCTTTCATGCTTTACAACCTCATTAGTTACCTATGGTCACCGATAACTCTTACATCACCTTATAATGCTATACTTCACATCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E373756" ref_strand="+" ref_description="SGN-E373756 [TUS-31-E12]">
      <seq>tcctttggagggtttcaaagcattgcaagggatctctggccctcagagatttcagattcacaaagcttatggagctcctgataggctcccatctgcacatacctgcttcaaccaacttgaccttccggagtatacttccaaagaacaacttcaagaacgtttgcttttggctatccatgaggctagtgaaggatttggttttggttgagacaagcttaccttgtgcagatttcctgaaaattgcatatatttgatcaccctgtgattgccatgtaaatactggctgatcgatatcaactgcacaagatagatttggagtggtatttcttagaaatttgagtccatgcagagcctgcctcaaggatgtgtaggtagttggccacaccactctggtcagtttagtatcttgagggtagtgagttatgcattacaagtggtgaggagctctgttattttgttgttccttccattgcgataggacactcctacagccatccccgtgtagataagtcggttctctttttgtcagggggtttagtgtaggaggtctacatttattttgggaaatgggtaggttgctaattctttcatgctttacaacctcattagttacctatggtcaccgataactcttacatcaccttataatgctatacttcacatctggtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="31166" stop="33211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31466" g_stop="31570" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31571" i_stop="31700" i_length="130">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31701" g_stop="31873" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="278" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31874" i_stop="32520" i_length="647">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32521" g_stop="32910" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="668" r_length="390" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="669" polyA_stop="681"/>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E373756" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31466" e_stop="31570"/>
          <exon e_start="31701" e_stop="31873"/>
          <exon e_start="32521" e_stop="32910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTGGAGGGTTTCAAAGCATTGCAAGGGATCTCTGGCCCTCAGAGATTTCAGATTCACAAAGCTTATGGAGCTCCTGAGAGGCTCCCATCTGCACATACCTGGTTGGTGCTTGTATATCAGACTTATTATATGCTTATCAGTAGTTCACTCATAATTAAGTAGATGCCATCTGGGAGATAGTATGTAGCAAAGCTTTAGTGACCCTTACTGTCATTTGTCTTTTCCTTCCAGCTTCAACCAACTTGACCTTCCGGAGTATACTTCCAAAGAACAACTTCAAGAACGTTTGCTTTTGGCTATCCATGAGGCTAGTGAAGGATTTGGTTTTGGTTGAGACAAGCTTACCTTGTGCAGATTTCCTGAAAATTGCATATATTTGATCACCCTGTGATTGCCATGTAAATGTAAGTATGTCCTCTTTTCATTTTACTTCTCTTGTTTCGCTGTAGTTGGTAACTAAAACCACTCACTTGTTCACTGCTTTGTCAAGTGATGAAAATTCTGCTCTTCAAGTCGAAATTTGTTTCCTTCACCTTCTTTAGATGAGGTTGTTATGATGGTTGTTGAGTGCTTAAATCTTGCTCTACTTTATGGCATGTGATTTGAATTTTCTGTGAGGTGTCTGCAGATTTTGGGTGTCCTATGATAAGCATGATTCTAATAAGTGATTGACGGAAATATGTGACTTTTGTTTCTGCATGTGCTCAAATATTGGCATATTCACTTCTGAAACTTCGACGAAAATATGTGACTTTTGTTTCTACATGTGCTCAAATATTGGCATATTCACGTCTGAAACTTTGACGGAAAGACCATCTGTTTTCTCATCGTCAAATTTCCCTCATTGGGCTGTGTTCTAGTTGCTCTCCTGTCCTGTATTGCTCCACTGAAGTAGTAATAACATATAATTACTGAACCATTGTCGTGCATGCCTAATTTAACATGAATGGTGGTTATCAATTTTTAAGGCTTATAATAGGTTTTCTGCTTGGTTGATTTACTGGTCAATTAACTCGAAAAATGCTGATGAGCTTCACTTTGTCTCATGCAGACTGGCTGATCGATATCAACTGCACAAGATAGATTTGGAGTGGTATTTCTTAGAAATTTGAGTCCATGCAGAGCCTGCCTCAAGGATGTGTAGGTAGTTGGCCACACCACTCTGGTCAGTTTAGTATCTTGAGGGTAGTGAGTTATGCATTACAAGTGGTGAGGAGCTCTGTTATTTTGTTGTTCCTTCCATTGCGATAGGACACTCCTACAGCCATCCCCGTGTAGATAAGTCGGTTCTCTTTTTGTCAGGGGGTTTAGTGTAGGAGGTCTACATTTATTTTGGGAAATGGGTAGGTTGCTAATTCTTTCATGCTTTACAACCTCATTAGTTACCTATGGTCACCGATAACTCTTACATCACCTTATAATGCTATACTTCACATCTGGT</genome_strand>
        <mrna_strand>TCCTTTGGAGGGTTTCAAAGCATTGCAAGGGATCTCTGGCCCTCAGAGATTTCAGATTCACAAAGCTTATGGAGCTCCTGATAGGCTCCCATCTGCACATACCTG..................................................................................................................................CTTCAACCAACTTGACCTTCCGGAGTATACTTCCAAAGAACAACTTCAAGAACGTTTGCTTTTGGCTATCCATGAGGCTAGTGAAGGATTTGGTTTTGGTTGAGACAAGCTTACCTTGTGCAGATTTCCTGAAAATTGCATATATTTGATCACCCTGTGATTGCCATGTAAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGCTGATCGATATCAACTGCACAAGATAGATTTGGAGTGGTATTTCTTAGAAATTTGAGTCCATGCAGAGCCTGCCTCAAGGATGTGTAGGTAGTTGGCCACACCACTCTGGTCAGTTTAGTATCTTGAGGGTAGTGAGTTATGCATTACAAGTGGTGAGGAGCTCTGTTATTTTGTTGTTCCTTCCATTGCGATAGGACACTCCTACAGCCATCCCCGTGTAGATAAGTCGGTTCTCTTTTTGTCAGGGGGTTTAGTGTAGGAGGTCTACATTTATTTTGGGAAATGGGTAGGTTGCTAATTCTTTCATGCTTTACAACCTCATTAGTTACCTATGGTCACCGATAACTCTTACATCACCTTATAATGCTATACTTCACATCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E290562" ref_strand="+" ref_description="SGN-E290562 [cLES-20-D1]">
      <seq>tcctttggagggtttcaaagcattgcaagggatctctggccctcagagatttcagattcacaaagcttatggagctcctgataggctcccatctgcacatacctgcttcaaccaacttgaccttccggagtatacttccaaagaacaacttcaagaacgtttgcttttggctatccatgaggctagtgaaggatttggttttggttgagacaagcttaccttgtgcagatttcctgaaaattgcatatatttgatcaccctgtgattgccatgtaaatactggctgatcgatatcaactgcacaagataga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="31166" stop="32853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31466" g_stop="31570" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31571" i_stop="31700" i_length="130">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31701" g_stop="31873" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="278" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31874" i_stop="32520" i_length="647">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32521" g_stop="32553" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="311" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E290562" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31466" e_stop="31570"/>
          <exon e_start="31701" e_stop="31873"/>
          <exon e_start="32521" e_stop="32553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTGGAGGGTTTCAAAGCATTGCAAGGGATCTCTGGCCCTCAGAGATTTCAGATTCACAAAGCTTATGGAGCTCCTGAGAGGCTCCCATCTGCACATACCTGGTTGGTGCTTGTATATCAGACTTATTATATGCTTATCAGTAGTTCACTCATAATTAAGTAGATGCCATCTGGGAGATAGTATGTAGCAAAGCTTTAGTGACCCTTACTGTCATTTGTCTTTTCCTTCCAGCTTCAACCAACTTGACCTTCCGGAGTATACTTCCAAAGAACAACTTCAAGAACGTTTGCTTTTGGCTATCCATGAGGCTAGTGAAGGATTTGGTTTTGGTTGAGACAAGCTTACCTTGTGCAGATTTCCTGAAAATTGCATATATTTGATCACCCTGTGATTGCCATGTAAATGTAAGTATGTCCTCTTTTCATTTTACTTCTCTTGTTTCGCTGTAGTTGGTAACTAAAACCACTCACTTGTTCACTGCTTTGTCAAGTGATGAAAATTCTGCTCTTCAAGTCGAAATTTGTTTCCTTCACCTTCTTTAGATGAGGTTGTTATGATGGTTGTTGAGTGCTTAAATCTTGCTCTACTTTATGGCATGTGATTTGAATTTTCTGTGAGGTGTCTGCAGATTTTGGGTGTCCTATGATAAGCATGATTCTAATAAGTGATTGACGGAAATATGTGACTTTTGTTTCTGCATGTGCTCAAATATTGGCATATTCACTTCTGAAACTTCGACGAAAATATGTGACTTTTGTTTCTACATGTGCTCAAATATTGGCATATTCACGTCTGAAACTTTGACGGAAAGACCATCTGTTTTCTCATCGTCAAATTTCCCTCATTGGGCTGTGTTCTAGTTGCTCTCCTGTCCTGTATTGCTCCACTGAAGTAGTAATAACATATAATTACTGAACCATTGTCGTGCATGCCTAATTTAACATGAATGGTGGTTATCAATTTTTAAGGCTTATAATAGGTTTTCTGCTTGGTTGATTTACTGGTCAATTAACTCGAAAAATGCTGATGAGCTTCACTTTGTCTCATGCAGACTGGCTGATCGATATCAACTGCACAAGATAGA</genome_strand>
        <mrna_strand>TCCTTTGGAGGGTTTCAAAGCATTGCAAGGGATCTCTGGCCCTCAGAGATTTCAGATTCACAAAGCTTATGGAGCTCCTGATAGGCTCCCATCTGCACATACCTG..................................................................................................................................CTTCAACCAACTTGACCTTCCGGAGTATACTTCCAAAGAACAACTTCAAGAACGTTTGCTTTTGGCTATCCATGAGGCTAGTGAAGGATTTGGTTTTGGTTGAGACAAGCTTACCTTGTGCAGATTTCCTGAAAATTGCATATATTTGATCACCCTGTGATTGCCATGTAAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGCTGATCGATATCAACTGCACAAGATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E342092" ref_strand="+" ref_description="SGN-E342092 [cTOF-10-A9]">
      <seq>caaaattacgcattttcatacttttctctctcaaaaaattcctttctctttcgctctgttccactgaggaaaattctcattctctatagttggattcatgtcggaaaagggtcgaccattgcctaagtttggtgaatgggatgtcaatgatccagcttctgcagagggatttactgtgattttcaacaaggctagggatgagaaaaaaactggtggcaagccagactcaccatcaaagactgatggtaatagaaaggaaggagaagaacctttaaaacctcaaactaaaaaatggttttgctgtatgcagagccctcatgcagaatcttgacaatgttgtgtaaaatctgaatataggatgcatattcataatgaaaccccacaacttcttttggattggtgctggagactgaggcattgctcaaagtccccttttgtcttgtaaacttgtgttatattgttggggaaacaaaatatgaaagacaaaaatgtttgatgttgtacctatatgttgtatctttttattttacctttagcagacaagcacatangtgtggtttgtaaagcacctctcaaccgtaaatttttcttgttgatttcatgagatcatngttgtttttgcctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="34920" stop="40190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35220" g_stop="35322" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35323" i_stop="37482" i_length="2160">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.537" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37483" g_stop="37665" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="286" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37666" i_stop="39542" i_length="1877">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39543" g_stop="39889" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="635" r_length="349" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E342092" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35220" e_stop="35322"/>
          <exon e_start="37483" e_stop="37665"/>
          <exon e_start="39543" e_stop="39889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTACGCATTTTCATACTTTTCTCTCTCAAAAAATTCCTTTCTCTTTCGCTCTGTTCCACTGAGGAAAATTCTCATTCTCTATAGTTGGATTCATGTCGGTATGTAATTTTTACTCAAGATTGATTTTTTAATCATCTTGATTATTTGTTTCTGTTTACTCGATTTCACTTGCCCCCCCCCCCCCCTTTTTTTGTTTTTTTCAATTTTTGTTAGCTGATGATGTGATATGTGTGTTGATCATGTGAATGGATGATTATGGTTTGTTTGTTTGGGGGGTTTATTGGGTTTTTATTTTTTGCTTAATGGGTTTTCATTGATGGGTTCATTTTGCTGAATTTGCTGGGTTTTTTTTTTTGAGTTTGAGTTTGATCGAGAATCTTGACTTTCAGCTAGATCCTGTATAGAGCTTGGTTTTGTTGAATTTTGGTCCTTGAAATTTTTGCTTTTCATTTTGGTATGACTTTGGATGGTTAAACTGAGCTGAAATGCCCCTACCCCTTTTTGAAAGGGGACAAGAAAGGGGCCAGTGGACTGCTATTGGAATGGAATGTTATGAGCTGGACTCTCGGTGACCTCATGGATCACTGCTATCCAGTTGGGTTTTGTTTATTTTCATTGAACCATGTGCAAAAGGAAAATTGTTTTTGCTTTGTTAGGTTGTTTAGTTTTTCGATAAAGCTTTGTTGGGTTCCTTTTATTGATGACAAAGGAACCAGCAGCCGCTATCCTTCGGGTGCACACAGGGTTCTCAAACTAGCCTCGTGCGATGAGCTCAACCCCTTGTCACAAGCTGGGGGTTTCGGTGGGTTCCTTATTACTAGTACTTTTTTTTAAAAAAAAAACTATTTTCCATGTGCTTTATATTCAAAGGGTAGTTCTTGATGTGATGTGATGACTGTCTTAAGATGTTTTAACTTCATAACTGCAATTACCCCATTTTCCCCTAATGTGGAGTCTACTTTTTGCAAAATATACACTTAGCTTAGTTACAACAACAACATACCTAGTGTAATCCACTAGTGGGGTCTCGGGGGAGTAGGATATGCACAGGCCTTACCTGCCCCTACTTTTTGTGGGGTACGTAGCTCAGTTACATATCTAATATGTATACGTTTATGCATACAGATGTTCCAACTTGAAGTGTACTTTTACTATCTCTGTGTCCATATAGGGATATTCAAGTTTAGAAGTTTCTTGGATGTGCTGATTAGATAGGCTCTTTCCTGCCAGTAGTGATAAGTTTTTGTTTTTTATGTTCAGTGTTTGAATTTGTTAAGTTGACTATTAGCTTGTTTTTTCAATAGAGAAAATATGGCGCACCCAAAGGGTAGCGGCTGCGGGTTCCCTTGTCATCGAAAAAAATAGAGAAAATCTGAATAGCTTGAAATTTTTGTATTGCATTGTTTCCTCTTGTGTGGATTTCATAAACCGTGTCAATGTATGTATTTCTAGTCTTTTCTCCTTTTAATGCTTTGATCTGCTCATGCATCAACTAATGGGAAAGTGTATATCTCCAGTTGGAGTTAAGTCAAGTGGTTTTTAGAAAGGTAGTTGACACTATGATGGTTTTGTTATGATCTTTAGAGTACATTTACCTTCCTTGATTTGTCATTGCCCTTTTAATGGCATTGAGGACTTGGATCATAGTGGTTTAAGAGCTTTTTAGAGGTAACATGCCAGCAATACCAGGGTACAATTTCTGGAATCAGTTTGATATGAATTCTAATTCATTTTAAGAAGAATTGAATTGACATTTTGTGGATGCATATTGTAGTTTTCCAGTTGCTGGAGACTTCATAATATTGAACATCAGCAGTTCTGATAATTTGGATATAGACTTCAGCAGGTGTTTTTTTCTTTTGTTCTCAAGTTGTTCGTACCTTCTCCACATCCTTTTTCAGTAGCAAAATTTTGAACCTTTGGTGAGATCAAAGGAATTTCAGAGTTGTCCATCACTTTGTGCATGCTTCCTAATGGATCAAGTTCGCATTTTCATGTAGTATTATAGATTTGGAGAATTTGGCCTTCTTCTCGTGTTGATTATGGGATGGAGTCATAGATATGTATTCTTGCACGTTATATCAACAAAATTGTAGTGGCATAATGATAATTTAGCTTCTTTCTCTGCGACTGCAATAGGATTTGTTCACAGTTCATTCATGAAATTACTCACTTGACTAATGGCAACTATACTGTATTCTTCTTTTGGTCCAATAATTTACCTTACATATTTGGCTTTCACATCTATCTTCAAGCAGGAAAAGGGTCGACCATTGCCTAAGTTTGGTGAATGGGATGTCAATGATCCAGCTTCTGCAGAGGGATTTACTGTGATTTTCAACAAGGCTAGGGATGAGAAAAAAACTGGTGGCAAGCCAGACTCACCATCAAAGACTGATGGTAATAGAAAGGAAGGAGAAGAACCTTTAAAACCTCAAACTGTAAGTTATTTTGATAACTTTTTCTCTGGATGAATATATTAAATGACTTATACCCTCTACACTTTTTGGTTGAAATGTTAAGAATTCTGCCCTTTGCTCTTCACATATTTAAACTGCCATTAGCTGTGTGATTCTGCATCTTCACAGAGAGACTATCCAGTCAGAGGATAATTCATTTATCAAATAGGTGATACGCCATCCCACTCTATGTCCCTCTCAAAACAGTTGAAGGACGCCAATATCCAATCTACAATATAATTATCCACTCTACACCAACTAAGCCACTTTCAGCTATCTTCTGCTGTCTCATATTTTCAAAATATTTTGGCTGTAATATAGTGAATTATATGTGCATGTTTATCAAAATTAAATTTCCATCACACTGTATAATCATCATTTAAGAATAATTTGCTAGACTAATGCAAAGGCTTCAGCTTAATTACTTTAAGATCCCGATCATTAACTTAACCAGTTATAGTTTAGAACACATGGTAGTAGGTATTTTAGGCTGATGGCAATTCTTGTTGTGTGGAGAACTTCCCTTTGGCTGTGAGCATCAGTAAATTCTTATTGTATAGTGGTCAGATCATATACACTCTATTGGAACTCCAAGTGGAACTTCCTGTATAAGCATAGGATTAAAACCATCATTTAGGGAACTCATGTAATTTATTTGCTCTAATCAATCTTCGCTTCTAGTCAACTATCTAAGGAAAAGATATGTGAGGCAATGTTTCTTGGGAATCCTCTAGGATTTTCTAGATGTGACGTAGGCTTCTAAACGCATGAGGGCAACCATGAAGAGCAGAAGTTTTATAGGGATAACACCTTGACATTTGTAGCTTTCATCTTATGCATACTATTCATATTGGTTGTCTGCCTTGTATGTCTCTAGACCTCAAGTTCACTTTACAACTTTGATAGTTCATCTTGTACGTACTAAGACTGTAAGACGATAACTTAGCTTTTCATTATAAGTGTTAAACTATTAACTTCTTTAATTAATATTTGTTTGCTCCGTAGTTTGAAGATGTAGTATAACTTTTATGACACAATATTTAATTTGTTTTTGTACATTTTTTGGTTCTGATTAATACGATTTTAAATGTACTTTCATGACATAAATTTTTTGTGGGGTGGACCCTAATATTATATACCTCTACTTTTAAACATTGGAAAGAAGAACCTACCTTTTCTTACTCGGGGATGGCTGGGTTGTTCCCAACATGATAGTTGAGTGGTTCAGGCATAGAATTAACAACATAGAGATCGTAATTTTCAGTGTGAGCCAACTTGCTAGCCTTGGTGGTACCTATGCTTGTGGTCTGGACCAGAGTCGACCTGCACGCAAGCTTGCTATGATACCAGGGTCTCCGAAAAATGAGTGATATTCAACTTCTTGATTTCTACGCTCGCAGTAATGAACTTTAAATAGTTGCCACCTAGTATAACTTAATATTCAAAGAATTAGAGAGCAAGGCTAATTATGTATTGTTTGGATGGCGCTTCCTTTACATAGACGTTTTGAGGAAAAGAAAATACTTGTCAGGTTATCTAAGTAGTTGACCAGCTGCATTTTTTTTCCTTCAGTATGAGTAAGAGTAGTTGACCAGCTCCATTATGGCTTGGGTTAGGAAGATTTATCCTGTCCTTAATTGTCAAACTTTAGTTTTGGAATCATCAGGTTAGATTTCTATTGTCTTTGCTAATATGACTAGATGAGTGTGGTTGCGAGCATACTACAATCATGTGTTTGCTTTTTGATGTAACGACAAATGGTGACCCATCTGAATATACTTTTCATATATGCTACTTGTCTCATTAATCTTTGAAGCATTCTTATTAATAATTTCACCAATATATTTGTCGTTTTGCAGAAAAAATGGTTTTGCTGTATGCAGAGCCCTCATGCAGAATCTTGACAATGTTGTGTAAAATCTGAATATAGGATGCATATTCATAATGAAACCCCACAACTTCTTTTGGATTGGTGCTGGAGACTGAGGCATTGCTCAAAGTCCCCTTTTGTCTTGTAAACTTGTGTTATATTGTTGGGGAAACAAAATATGAAAGACAAAAATGTTTGATGTTGTACCTATATGTTGTATCTTTTTATTTTACCTTTAGCAGACAAGCACATA-GTGTGGTTTGTAAAGCACCTCTCAACCGTAAATTTTTCTTGTTGATTTCATGAGATCAT-GTTGTTTTTGCCTAATAAGTAGAA</genome_strand>
        <mrna_strand>CAAAATTACGCATTTTCATACTTTTCTCTCTCAAAAAATTCCTTTCTCTTTCGCTCTGTTCCACTGAGGAAAATTCTCATTCTCTATAGTTGGATTCATGTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGGTCGACCATTGCCTAAGTTTGGTGAATGGGATGTCAATGATCCAGCTTCTGCAGAGGGATTTACTGTGATTTTCAACAAGGCTAGGGATGAGAAAAAAACTGGTGGCAAGCCAGACTCACCATCAAAGACTGATGGTAATAGAAAGGAAGGAGAAGAACCTTTAAAACCTCAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAATGGTTTTGCTGTATGCAGAGCCCTCATGCAGAATCTTGACAATGTTGTGTAAAATCTGAATATAGGATGCATATTCATAATGAAACCCCACAACTTCTTTTGGATTGGTGCTGGAGACTGAGGCATTGCTCAAAGTCCCCTTTTGTCTTGTAAACTTGTGTTATATTGTTGGGGAAACAAAATATGAAAGACAAAAATGTTTGATGTTGTACCTATATGTTGTATCTTTTTATTTTACCTTTAGCAGACAAGCACATANGTGTGGTTTGTAAAGCACCTCTCAACCGTAAATTTTTCTTGTTGATTTCATGAGATCATNGTTGTTTTTGCCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E309107" ref_strand="+" ref_description="SGN-E309107 [cLEZ-1-C11]">
      <seq>caaaattacgcattttcatacttttctctctcaaaaaattcctttctctttcgctctgttccactgaggaaaattctcattctctatagttggattcatgtcggaaaagggtcgaccattgcctaagtttggtgaatgggatgtcaatgatccagcttctgcagagggatttactgtgattttcaacaaggctagggatgagaaaaaaactggtggcaagccagactcaccatcaaagactgatggtaatagaaaggaaggagaagaacctttaaaacctcaaactaaaaaatggttttgctgtatgcagagccctcatgcagaatcttgacaatgttgtgtaaaatctgaatataggatgcatattcataatgaaaccccacaacttcttttggattggtgctggagactgaggcattgctcaaagtccccttttgtcttgtaaacttgtgttatattgttggggaaacaaaatatgaaagacaaaaatgtttgatgttgcacctatatgttgtatctttttattttacctttagcagacaagcacatagtgtggtttgtaaagcacctctcaaccgtaaatttttcttgttgatttcatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="34920" stop="40161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35220" g_stop="35322" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35323" i_stop="37482" i_length="2160">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.537" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37483" g_stop="37665" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="286" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37666" i_stop="39542" i_length="1877">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39543" g_stop="39861" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="605" r_length="319" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E309107" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35220" e_stop="35322"/>
          <exon e_start="37483" e_stop="37665"/>
          <exon e_start="39543" e_stop="39861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTACGCATTTTCATACTTTTCTCTCTCAAAAAATTCCTTTCTCTTTCGCTCTGTTCCACTGAGGAAAATTCTCATTCTCTATAGTTGGATTCATGTCGGTATGTAATTTTTACTCAAGATTGATTTTTTAATCATCTTGATTATTTGTTTCTGTTTACTCGATTTCACTTGCCCCCCCCCCCCCCTTTTTTTGTTTTTTTCAATTTTTGTTAGCTGATGATGTGATATGTGTGTTGATCATGTGAATGGATGATTATGGTTTGTTTGTTTGGGGGGTTTATTGGGTTTTTATTTTTTGCTTAATGGGTTTTCATTGATGGGTTCATTTTGCTGAATTTGCTGGGTTTTTTTTTTTGAGTTTGAGTTTGATCGAGAATCTTGACTTTCAGCTAGATCCTGTATAGAGCTTGGTTTTGTTGAATTTTGGTCCTTGAAATTTTTGCTTTTCATTTTGGTATGACTTTGGATGGTTAAACTGAGCTGAAATGCCCCTACCCCTTTTTGAAAGGGGACAAGAAAGGGGCCAGTGGACTGCTATTGGAATGGAATGTTATGAGCTGGACTCTCGGTGACCTCATGGATCACTGCTATCCAGTTGGGTTTTGTTTATTTTCATTGAACCATGTGCAAAAGGAAAATTGTTTTTGCTTTGTTAGGTTGTTTAGTTTTTCGATAAAGCTTTGTTGGGTTCCTTTTATTGATGACAAAGGAACCAGCAGCCGCTATCCTTCGGGTGCACACAGGGTTCTCAAACTAGCCTCGTGCGATGAGCTCAACCCCTTGTCACAAGCTGGGGGTTTCGGTGGGTTCCTTATTACTAGTACTTTTTTTTAAAAAAAAAACTATTTTCCATGTGCTTTATATTCAAAGGGTAGTTCTTGATGTGATGTGATGACTGTCTTAAGATGTTTTAACTTCATAACTGCAATTACCCCATTTTCCCCTAATGTGGAGTCTACTTTTTGCAAAATATACACTTAGCTTAGTTACAACAACAACATACCTAGTGTAATCCACTAGTGGGGTCTCGGGGGAGTAGGATATGCACAGGCCTTACCTGCCCCTACTTTTTGTGGGGTACGTAGCTCAGTTACATATCTAATATGTATACGTTTATGCATACAGATGTTCCAACTTGAAGTGTACTTTTACTATCTCTGTGTCCATATAGGGATATTCAAGTTTAGAAGTTTCTTGGATGTGCTGATTAGATAGGCTCTTTCCTGCCAGTAGTGATAAGTTTTTGTTTTTTATGTTCAGTGTTTGAATTTGTTAAGTTGACTATTAGCTTGTTTTTTCAATAGAGAAAATATGGCGCACCCAAAGGGTAGCGGCTGCGGGTTCCCTTGTCATCGAAAAAAATAGAGAAAATCTGAATAGCTTGAAATTTTTGTATTGCATTGTTTCCTCTTGTGTGGATTTCATAAACCGTGTCAATGTATGTATTTCTAGTCTTTTCTCCTTTTAATGCTTTGATCTGCTCATGCATCAACTAATGGGAAAGTGTATATCTCCAGTTGGAGTTAAGTCAAGTGGTTTTTAGAAAGGTAGTTGACACTATGATGGTTTTGTTATGATCTTTAGAGTACATTTACCTTCCTTGATTTGTCATTGCCCTTTTAATGGCATTGAGGACTTGGATCATAGTGGTTTAAGAGCTTTTTAGAGGTAACATGCCAGCAATACCAGGGTACAATTTCTGGAATCAGTTTGATATGAATTCTAATTCATTTTAAGAAGAATTGAATTGACATTTTGTGGATGCATATTGTAGTTTTCCAGTTGCTGGAGACTTCATAATATTGAACATCAGCAGTTCTGATAATTTGGATATAGACTTCAGCAGGTGTTTTTTTCTTTTGTTCTCAAGTTGTTCGTACCTTCTCCACATCCTTTTTCAGTAGCAAAATTTTGAACCTTTGGTGAGATCAAAGGAATTTCAGAGTTGTCCATCACTTTGTGCATGCTTCCTAATGGATCAAGTTCGCATTTTCATGTAGTATTATAGATTTGGAGAATTTGGCCTTCTTCTCGTGTTGATTATGGGATGGAGTCATAGATATGTATTCTTGCACGTTATATCAACAAAATTGTAGTGGCATAATGATAATTTAGCTTCTTTCTCTGCGACTGCAATAGGATTTGTTCACAGTTCATTCATGAAATTACTCACTTGACTAATGGCAACTATACTGTATTCTTCTTTTGGTCCAATAATTTACCTTACATATTTGGCTTTCACATCTATCTTCAAGCAGGAAAAGGGTCGACCATTGCCTAAGTTTGGTGAATGGGATGTCAATGATCCAGCTTCTGCAGAGGGATTTACTGTGATTTTCAACAAGGCTAGGGATGAGAAAAAAACTGGTGGCAAGCCAGACTCACCATCAAAGACTGATGGTAATAGAAAGGAAGGAGAAGAACCTTTAAAACCTCAAACTGTAAGTTATTTTGATAACTTTTTCTCTGGATGAATATATTAAATGACTTATACCCTCTACACTTTTTGGTTGAAATGTTAAGAATTCTGCCCTTTGCTCTTCACATATTTAAACTGCCATTAGCTGTGTGATTCTGCATCTTCACAGAGAGACTATCCAGTCAGAGGATAATTCATTTATCAAATAGGTGATACGCCATCCCACTCTATGTCCCTCTCAAAACAGTTGAAGGACGCCAATATCCAATCTACAATATAATTATCCACTCTACACCAACTAAGCCACTTTCAGCTATCTTCTGCTGTCTCATATTTTCAAAATATTTTGGCTGTAATATAGTGAATTATATGTGCATGTTTATCAAAATTAAATTTCCATCACACTGTATAATCATCATTTAAGAATAATTTGCTAGACTAATGCAAAGGCTTCAGCTTAATTACTTTAAGATCCCGATCATTAACTTAACCAGTTATAGTTTAGAACACATGGTAGTAGGTATTTTAGGCTGATGGCAATTCTTGTTGTGTGGAGAACTTCCCTTTGGCTGTGAGCATCAGTAAATTCTTATTGTATAGTGGTCAGATCATATACACTCTATTGGAACTCCAAGTGGAACTTCCTGTATAAGCATAGGATTAAAACCATCATTTAGGGAACTCATGTAATTTATTTGCTCTAATCAATCTTCGCTTCTAGTCAACTATCTAAGGAAAAGATATGTGAGGCAATGTTTCTTGGGAATCCTCTAGGATTTTCTAGATGTGACGTAGGCTTCTAAACGCATGAGGGCAACCATGAAGAGCAGAAGTTTTATAGGGATAACACCTTGACATTTGTAGCTTTCATCTTATGCATACTATTCATATTGGTTGTCTGCCTTGTATGTCTCTAGACCTCAAGTTCACTTTACAACTTTGATAGTTCATCTTGTACGTACTAAGACTGTAAGACGATAACTTAGCTTTTCATTATAAGTGTTAAACTATTAACTTCTTTAATTAATATTTGTTTGCTCCGTAGTTTGAAGATGTAGTATAACTTTTATGACACAATATTTAATTTGTTTTTGTACATTTTTTGGTTCTGATTAATACGATTTTAAATGTACTTTCATGACATAAATTTTTTGTGGGGTGGACCCTAATATTATATACCTCTACTTTTAAACATTGGAAAGAAGAACCTACCTTTTCTTACTCGGGGATGGCTGGGTTGTTCCCAACATGATAGTTGAGTGGTTCAGGCATAGAATTAACAACATAGAGATCGTAATTTTCAGTGTGAGCCAACTTGCTAGCCTTGGTGGTACCTATGCTTGTGGTCTGGACCAGAGTCGACCTGCACGCAAGCTTGCTATGATACCAGGGTCTCCGAAAAATGAGTGATATTCAACTTCTTGATTTCTACGCTCGCAGTAATGAACTTTAAATAGTTGCCACCTAGTATAACTTAATATTCAAAGAATTAGAGAGCAAGGCTAATTATGTATTGTTTGGATGGCGCTTCCTTTACATAGACGTTTTGAGGAAAAGAAAATACTTGTCAGGTTATCTAAGTAGTTGACCAGCTGCATTTTTTTTCCTTCAGTATGAGTAAGAGTAGTTGACCAGCTCCATTATGGCTTGGGTTAGGAAGATTTATCCTGTCCTTAATTGTCAAACTTTAGTTTTGGAATCATCAGGTTAGATTTCTATTGTCTTTGCTAATATGACTAGATGAGTGTGGTTGCGAGCATACTACAATCATGTGTTTGCTTTTTGATGTAACGACAAATGGTGACCCATCTGAATATACTTTTCATATATGCTACTTGTCTCATTAATCTTTGAAGCATTCTTATTAATAATTTCACCAATATATTTGTCGTTTTGCAGAAAAAATGGTTTTGCTGTATGCAGAGCCCTCATGCAGAATCTTGACAATGTTGTGTAAAATCTGAATATAGGATGCATATTCATAATGAAACCCCACAACTTCTTTTGGATTGGTGCTGGAGACTGAGGCATTGCTCAAAGTCCCCTTTTGTCTTGTAAACTTGTGTTATATTGTTGGGGAAACAAAATATGAAAGACAAAAATGTTTGATGTTGTACCTATATGTTGTATCTTTTTATTTTACCTTTAGCAGACAAGCACATAGTGTGGTTTGTAAAGCACCTCTCAACCGTAAATTTTTCTTGTTGATTTCATGAGA</genome_strand>
        <mrna_strand>CAAAATTACGCATTTTCATACTTTTCTCTCTCAAAAAATTCCTTTCTCTTTCGCTCTGTTCCACTGAGGAAAATTCTCATTCTCTATAGTTGGATTCATGTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGGTCGACCATTGCCTAAGTTTGGTGAATGGGATGTCAATGATCCAGCTTCTGCAGAGGGATTTACTGTGATTTTCAACAAGGCTAGGGATGAGAAAAAAACTGGTGGCAAGCCAGACTCACCATCAAAGACTGATGGTAATAGAAAGGAAGGAGAAGAACCTTTAAAACCTCAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAATGGTTTTGCTGTATGCAGAGCCCTCATGCAGAATCTTGACAATGTTGTGTAAAATCTGAATATAGGATGCATATTCATAATGAAACCCCACAACTTCTTTTGGATTGGTGCTGGAGACTGAGGCATTGCTCAAAGTCCCCTTTTGTCTTGTAAACTTGTGTTATATTGTTGGGGAAACAAAATATGAAAGACAAAAATGTTTGATGTTGCACCTATATGTTGTATCTTTTTATTTTACCTTTAGCAGACAAGCACATAGTGTGGTTTGTAAAGCACCTCTCAACCGTAAATTTTTCTTGTTGATTTCATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E294666" ref_strand="+" ref_description="SGN-E294666 [cLET-22-H17]">
      <seq>caaaattacgcattttcatacttttctctctcaaaaaaattcctttctctttcgctctgttccactgaggaaaattctcattctctatagttggattcatgtcggaaaagggtcgaccattgcctaagtttggtgaatgggatgtcaatgatccagcttctgcagagggatttactgtgattttcaacaaggctagggatgagaaaaaaactggtggcaagccagactcaccatcaaagactgatggtaatagaaaggaaggagaagaacctttaaaacctcaaactaaaaatggttttgctgtatgcagagccctcatgcagaatcttgacaatgttgtgtaaaatctgaatataggatgcatattcataatgaaaccccacaacttcttttggattggtgctggagactgaagcattgctcaaagtccccttttgtcttgtaaacttgtgttatattggtgggggaacaaaatatgaaagacaaaaatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="34920" stop="40050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35220" g_stop="35322" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35323" i_stop="37482" i_length="2160">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.537" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37483" g_stop="37665" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="287" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37666" i_stop="39542" i_length="1877">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39543" g_stop="39750" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="494" r_length="207" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E294666" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35220" e_stop="35322"/>
          <exon e_start="37483" e_stop="37665"/>
          <exon e_start="39543" e_stop="39750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTACGCATTTTCATACTTTTCTCTCTCAA-AAAATTCCTTTCTCTTTCGCTCTGTTCCACTGAGGAAAATTCTCATTCTCTATAGTTGGATTCATGTCGGTATGTAATTTTTACTCAAGATTGATTTTTTAATCATCTTGATTATTTGTTTCTGTTTACTCGATTTCACTTGCCCCCCCCCCCCCCTTTTTTTGTTTTTTTCAATTTTTGTTAGCTGATGATGTGATATGTGTGTTGATCATGTGAATGGATGATTATGGTTTGTTTGTTTGGGGGGTTTATTGGGTTTTTATTTTTTGCTTAATGGGTTTTCATTGATGGGTTCATTTTGCTGAATTTGCTGGGTTTTTTTTTTTGAGTTTGAGTTTGATCGAGAATCTTGACTTTCAGCTAGATCCTGTATAGAGCTTGGTTTTGTTGAATTTTGGTCCTTGAAATTTTTGCTTTTCATTTTGGTATGACTTTGGATGGTTAAACTGAGCTGAAATGCCCCTACCCCTTTTTGAAAGGGGACAAGAAAGGGGCCAGTGGACTGCTATTGGAATGGAATGTTATGAGCTGGACTCTCGGTGACCTCATGGATCACTGCTATCCAGTTGGGTTTTGTTTATTTTCATTGAACCATGTGCAAAAGGAAAATTGTTTTTGCTTTGTTAGGTTGTTTAGTTTTTCGATAAAGCTTTGTTGGGTTCCTTTTATTGATGACAAAGGAACCAGCAGCCGCTATCCTTCGGGTGCACACAGGGTTCTCAAACTAGCCTCGTGCGATGAGCTCAACCCCTTGTCACAAGCTGGGGGTTTCGGTGGGTTCCTTATTACTAGTACTTTTTTTTAAAAAAAAAACTATTTTCCATGTGCTTTATATTCAAAGGGTAGTTCTTGATGTGATGTGATGACTGTCTTAAGATGTTTTAACTTCATAACTGCAATTACCCCATTTTCCCCTAATGTGGAGTCTACTTTTTGCAAAATATACACTTAGCTTAGTTACAACAACAACATACCTAGTGTAATCCACTAGTGGGGTCTCGGGGGAGTAGGATATGCACAGGCCTTACCTGCCCCTACTTTTTGTGGGGTACGTAGCTCAGTTACATATCTAATATGTATACGTTTATGCATACAGATGTTCCAACTTGAAGTGTACTTTTACTATCTCTGTGTCCATATAGGGATATTCAAGTTTAGAAGTTTCTTGGATGTGCTGATTAGATAGGCTCTTTCCTGCCAGTAGTGATAAGTTTTTGTTTTTTATGTTCAGTGTTTGAATTTGTTAAGTTGACTATTAGCTTGTTTTTTCAATAGAGAAAATATGGCGCACCCAAAGGGTAGCGGCTGCGGGTTCCCTTGTCATCGAAAAAAATAGAGAAAATCTGAATAGCTTGAAATTTTTGTATTGCATTGTTTCCTCTTGTGTGGATTTCATAAACCGTGTCAATGTATGTATTTCTAGTCTTTTCTCCTTTTAATGCTTTGATCTGCTCATGCATCAACTAATGGGAAAGTGTATATCTCCAGTTGGAGTTAAGTCAAGTGGTTTTTAGAAAGGTAGTTGACACTATGATGGTTTTGTTATGATCTTTAGAGTACATTTACCTTCCTTGATTTGTCATTGCCCTTTTAATGGCATTGAGGACTTGGATCATAGTGGTTTAAGAGCTTTTTAGAGGTAACATGCCAGCAATACCAGGGTACAATTTCTGGAATCAGTTTGATATGAATTCTAATTCATTTTAAGAAGAATTGAATTGACATTTTGTGGATGCATATTGTAGTTTTCCAGTTGCTGGAGACTTCATAATATTGAACATCAGCAGTTCTGATAATTTGGATATAGACTTCAGCAGGTGTTTTTTTCTTTTGTTCTCAAGTTGTTCGTACCTTCTCCACATCCTTTTTCAGTAGCAAAATTTTGAACCTTTGGTGAGATCAAAGGAATTTCAGAGTTGTCCATCACTTTGTGCATGCTTCCTAATGGATCAAGTTCGCATTTTCATGTAGTATTATAGATTTGGAGAATTTGGCCTTCTTCTCGTGTTGATTATGGGATGGAGTCATAGATATGTATTCTTGCACGTTATATCAACAAAATTGTAGTGGCATAATGATAATTTAGCTTCTTTCTCTGCGACTGCAATAGGATTTGTTCACAGTTCATTCATGAAATTACTCACTTGACTAATGGCAACTATACTGTATTCTTCTTTTGGTCCAATAATTTACCTTACATATTTGGCTTTCACATCTATCTTCAAGCAGGAAAAGGGTCGACCATTGCCTAAGTTTGGTGAATGGGATGTCAATGATCCAGCTTCTGCAGAGGGATTTACTGTGATTTTCAACAAGGCTAGGGATGAGAAAAAAACTGGTGGCAAGCCAGACTCACCATCAAAGACTGATGGTAATAGAAAGGAAGGAGAAGAACCTTTAAAACCTCAAACTGTAAGTTATTTTGATAACTTTTTCTCTGGATGAATATATTAAATGACTTATACCCTCTACACTTTTTGGTTGAAATGTTAAGAATTCTGCCCTTTGCTCTTCACATATTTAAACTGCCATTAGCTGTGTGATTCTGCATCTTCACAGAGAGACTATCCAGTCAGAGGATAATTCATTTATCAAATAGGTGATACGCCATCCCACTCTATGTCCCTCTCAAAACAGTTGAAGGACGCCAATATCCAATCTACAATATAATTATCCACTCTACACCAACTAAGCCACTTTCAGCTATCTTCTGCTGTCTCATATTTTCAAAATATTTTGGCTGTAATATAGTGAATTATATGTGCATGTTTATCAAAATTAAATTTCCATCACACTGTATAATCATCATTTAAGAATAATTTGCTAGACTAATGCAAAGGCTTCAGCTTAATTACTTTAAGATCCCGATCATTAACTTAACCAGTTATAGTTTAGAACACATGGTAGTAGGTATTTTAGGCTGATGGCAATTCTTGTTGTGTGGAGAACTTCCCTTTGGCTGTGAGCATCAGTAAATTCTTATTGTATAGTGGTCAGATCATATACACTCTATTGGAACTCCAAGTGGAACTTCCTGTATAAGCATAGGATTAAAACCATCATTTAGGGAACTCATGTAATTTATTTGCTCTAATCAATCTTCGCTTCTAGTCAACTATCTAAGGAAAAGATATGTGAGGCAATGTTTCTTGGGAATCCTCTAGGATTTTCTAGATGTGACGTAGGCTTCTAAACGCATGAGGGCAACCATGAAGAGCAGAAGTTTTATAGGGATAACACCTTGACATTTGTAGCTTTCATCTTATGCATACTATTCATATTGGTTGTCTGCCTTGTATGTCTCTAGACCTCAAGTTCACTTTACAACTTTGATAGTTCATCTTGTACGTACTAAGACTGTAAGACGATAACTTAGCTTTTCATTATAAGTGTTAAACTATTAACTTCTTTAATTAATATTTGTTTGCTCCGTAGTTTGAAGATGTAGTATAACTTTTATGACACAATATTTAATTTGTTTTTGTACATTTTTTGGTTCTGATTAATACGATTTTAAATGTACTTTCATGACATAAATTTTTTGTGGGGTGGACCCTAATATTATATACCTCTACTTTTAAACATTGGAAAGAAGAACCTACCTTTTCTTACTCGGGGATGGCTGGGTTGTTCCCAACATGATAGTTGAGTGGTTCAGGCATAGAATTAACAACATAGAGATCGTAATTTTCAGTGTGAGCCAACTTGCTAGCCTTGGTGGTACCTATGCTTGTGGTCTGGACCAGAGTCGACCTGCACGCAAGCTTGCTATGATACCAGGGTCTCCGAAAAATGAGTGATATTCAACTTCTTGATTTCTACGCTCGCAGTAATGAACTTTAAATAGTTGCCACCTAGTATAACTTAATATTCAAAGAATTAGAGAGCAAGGCTAATTATGTATTGTTTGGATGGCGCTTCCTTTACATAGACGTTTTGAGGAAAAGAAAATACTTGTCAGGTTATCTAAGTAGTTGACCAGCTGCATTTTTTTTCCTTCAGTATGAGTAAGAGTAGTTGACCAGCTCCATTATGGCTTGGGTTAGGAAGATTTATCCTGTCCTTAATTGTCAAACTTTAGTTTTGGAATCATCAGGTTAGATTTCTATTGTCTTTGCTAATATGACTAGATGAGTGTGGTTGCGAGCATACTACAATCATGTGTTTGCTTTTTGATGTAACGACAAATGGTGACCCATCTGAATATACTTTTCATATATGCTACTTGTCTCATTAATCTTTGAAGCATTCTTATTAATAATTTCACCAATATATTTGTCGTTTTGCAGAAAAAATGGTTTTGCTGTATGCAGAGCCCTCATGCAGAATCTTGACAATGTTGTGTAAAATCTGAATATAGGATGCATATTCATAATGAAACCCCACAACTTCTTTTGGATTGGTGCTGGAGACTGAGGCATTGCTCAAAGTCCCCTTTTGTCTTGTAAACTTGTGTTATATTGTTGGGGAAACAAAATATGAAAGACAAAAATGTTT</genome_strand>
        <mrna_strand>CAAAATTACGCATTTTCATACTTTTCTCTCTCAAAAAAATTCCTTTCTCTTTCGCTCTGTTCCACTGAGGAAAATTCTCATTCTCTATAGTTGGATTCATGTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGGTCGACCATTGCCTAAGTTTGGTGAATGGGATGTCAATGATCCAGCTTCTGCAGAGGGATTTACTGTGATTTTCAACAAGGCTAGGGATGAGAAAAAAACTGGTGGCAAGCCAGACTCACCATCAAAGACTGATGGTAATAGAAAGGAAGGAGAAGAACCTTTAAAACCTCAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-AAAAATGGTTTTGCTGTATGCAGAGCCCTCATGCAGAATCTTGACAATGTTGTGTAAAATCTGAATATAGGATGCATATTCATAATGAAACCCCACAACTTCTTTTGGATTGGTGCTGGAGACTGAAGCATTGCTCAAAGTCCCCTTTTGTCTTGTAAACTTGTGTTATATTGGTGGGGGAACAAAATATGAAAGACAAAAATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E540505" ref_strand="+" ref_description="SGN-E540505 [TUS-60-N1]">
      <seq>ggaaaattctcattctctatagttggattcatgtcggaaaagggtcgaccattgcctaagtttggtgaatgggatgtcaatgatccagcttctgcagagggatttactgtgattttcaacaaggctagggatgagaaaaaaactggtggcaagccagactcaccatcaaagactgatggtaatagaaaggaaggagaagaacctttaaaacctcaaactaaaaaatggttttgctgtatgcagagccctcatgcagaatcttgacaatgttgtgtaaaatctgaatataggatgcatattcataatgaaaccccacaacttcttttggattggtgctggagactgaggcattgctcaaagtccccttttgtcttgtaaacttgtgttatattgttggggaaacaaaatatgaaagacaaaaatgtttgatgttgtacctatatgttgtatctttttattttacctttagcagacaagcacatagtgtggtttgtaaagcacctctcaaccgtaaatttttcttgttgatttcatgaaaaananannnaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="34987" stop="40161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35287" g_stop="35322" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35323" i_stop="37482" i_length="2160">
            <donor d_prob="0.973" d_score="0.00"/>
            <acceptor a_prob="0.537" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37483" g_stop="37665" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="219" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37666" i_stop="39542" i_length="1877">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39543" g_stop="39860" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="537" r_length="318" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="548" polyA_stop="561"/>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E540505" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35287" e_stop="35322"/>
          <exon e_start="37483" e_stop="37665"/>
          <exon e_start="39543" e_stop="39860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAATTCTCATTCTCTATAGTTGGATTCATGTCGGTATGTAATTTTTACTCAAGATTGATTTTTTAATCATCTTGATTATTTGTTTCTGTTTACTCGATTTCACTTGCCCCCCCCCCCCCCTTTTTTTGTTTTTTTCAATTTTTGTTAGCTGATGATGTGATATGTGTGTTGATCATGTGAATGGATGATTATGGTTTGTTTGTTTGGGGGGTTTATTGGGTTTTTATTTTTTGCTTAATGGGTTTTCATTGATGGGTTCATTTTGCTGAATTTGCTGGGTTTTTTTTTTTGAGTTTGAGTTTGATCGAGAATCTTGACTTTCAGCTAGATCCTGTATAGAGCTTGGTTTTGTTGAATTTTGGTCCTTGAAATTTTTGCTTTTCATTTTGGTATGACTTTGGATGGTTAAACTGAGCTGAAATGCCCCTACCCCTTTTTGAAAGGGGACAAGAAAGGGGCCAGTGGACTGCTATTGGAATGGAATGTTATGAGCTGGACTCTCGGTGACCTCATGGATCACTGCTATCCAGTTGGGTTTTGTTTATTTTCATTGAACCATGTGCAAAAGGAAAATTGTTTTTGCTTTGTTAGGTTGTTTAGTTTTTCGATAAAGCTTTGTTGGGTTCCTTTTATTGATGACAAAGGAACCAGCAGCCGCTATCCTTCGGGTGCACACAGGGTTCTCAAACTAGCCTCGTGCGATGAGCTCAACCCCTTGTCACAAGCTGGGGGTTTCGGTGGGTTCCTTATTACTAGTACTTTTTTTTAAAAAAAAAACTATTTTCCATGTGCTTTATATTCAAAGGGTAGTTCTTGATGTGATGTGATGACTGTCTTAAGATGTTTTAACTTCATAACTGCAATTACCCCATTTTCCCCTAATGTGGAGTCTACTTTTTGCAAAATATACACTTAGCTTAGTTACAACAACAACATACCTAGTGTAATCCACTAGTGGGGTCTCGGGGGAGTAGGATATGCACAGGCCTTACCTGCCCCTACTTTTTGTGGGGTACGTAGCTCAGTTACATATCTAATATGTATACGTTTATGCATACAGATGTTCCAACTTGAAGTGTACTTTTACTATCTCTGTGTCCATATAGGGATATTCAAGTTTAGAAGTTTCTTGGATGTGCTGATTAGATAGGCTCTTTCCTGCCAGTAGTGATAAGTTTTTGTTTTTTATGTTCAGTGTTTGAATTTGTTAAGTTGACTATTAGCTTGTTTTTTCAATAGAGAAAATATGGCGCACCCAAAGGGTAGCGGCTGCGGGTTCCCTTGTCATCGAAAAAAATAGAGAAAATCTGAATAGCTTGAAATTTTTGTATTGCATTGTTTCCTCTTGTGTGGATTTCATAAACCGTGTCAATGTATGTATTTCTAGTCTTTTCTCCTTTTAATGCTTTGATCTGCTCATGCATCAACTAATGGGAAAGTGTATATCTCCAGTTGGAGTTAAGTCAAGTGGTTTTTAGAAAGGTAGTTGACACTATGATGGTTTTGTTATGATCTTTAGAGTACATTTACCTTCCTTGATTTGTCATTGCCCTTTTAATGGCATTGAGGACTTGGATCATAGTGGTTTAAGAGCTTTTTAGAGGTAACATGCCAGCAATACCAGGGTACAATTTCTGGAATCAGTTTGATATGAATTCTAATTCATTTTAAGAAGAATTGAATTGACATTTTGTGGATGCATATTGTAGTTTTCCAGTTGCTGGAGACTTCATAATATTGAACATCAGCAGTTCTGATAATTTGGATATAGACTTCAGCAGGTGTTTTTTTCTTTTGTTCTCAAGTTGTTCGTACCTTCTCCACATCCTTTTTCAGTAGCAAAATTTTGAACCTTTGGTGAGATCAAAGGAATTTCAGAGTTGTCCATCACTTTGTGCATGCTTCCTAATGGATCAAGTTCGCATTTTCATGTAGTATTATAGATTTGGAGAATTTGGCCTTCTTCTCGTGTTGATTATGGGATGGAGTCATAGATATGTATTCTTGCACGTTATATCAACAAAATTGTAGTGGCATAATGATAATTTAGCTTCTTTCTCTGCGACTGCAATAGGATTTGTTCACAGTTCATTCATGAAATTACTCACTTGACTAATGGCAACTATACTGTATTCTTCTTTTGGTCCAATAATTTACCTTACATATTTGGCTTTCACATCTATCTTCAAGCAGGAAAAGGGTCGACCATTGCCTAAGTTTGGTGAATGGGATGTCAATGATCCAGCTTCTGCAGAGGGATTTACTGTGATTTTCAACAAGGCTAGGGATGAGAAAAAAACTGGTGGCAAGCCAGACTCACCATCAAAGACTGATGGTAATAGAAAGGAAGGAGAAGAACCTTTAAAACCTCAAACTGTAAGTTATTTTGATAACTTTTTCTCTGGATGAATATATTAAATGACTTATACCCTCTACACTTTTTGGTTGAAATGTTAAGAATTCTGCCCTTTGCTCTTCACATATTTAAACTGCCATTAGCTGTGTGATTCTGCATCTTCACAGAGAGACTATCCAGTCAGAGGATAATTCATTTATCAAATAGGTGATACGCCATCCCACTCTATGTCCCTCTCAAAACAGTTGAAGGACGCCAATATCCAATCTACAATATAATTATCCACTCTACACCAACTAAGCCACTTTCAGCTATCTTCTGCTGTCTCATATTTTCAAAATATTTTGGCTGTAATATAGTGAATTATATGTGCATGTTTATCAAAATTAAATTTCCATCACACTGTATAATCATCATTTAAGAATAATTTGCTAGACTAATGCAAAGGCTTCAGCTTAATTACTTTAAGATCCCGATCATTAACTTAACCAGTTATAGTTTAGAACACATGGTAGTAGGTATTTTAGGCTGATGGCAATTCTTGTTGTGTGGAGAACTTCCCTTTGGCTGTGAGCATCAGTAAATTCTTATTGTATAGTGGTCAGATCATATACACTCTATTGGAACTCCAAGTGGAACTTCCTGTATAAGCATAGGATTAAAACCATCATTTAGGGAACTCATGTAATTTATTTGCTCTAATCAATCTTCGCTTCTAGTCAACTATCTAAGGAAAAGATATGTGAGGCAATGTTTCTTGGGAATCCTCTAGGATTTTCTAGATGTGACGTAGGCTTCTAAACGCATGAGGGCAACCATGAAGAGCAGAAGTTTTATAGGGATAACACCTTGACATTTGTAGCTTTCATCTTATGCATACTATTCATATTGGTTGTCTGCCTTGTATGTCTCTAGACCTCAAGTTCACTTTACAACTTTGATAGTTCATCTTGTACGTACTAAGACTGTAAGACGATAACTTAGCTTTTCATTATAAGTGTTAAACTATTAACTTCTTTAATTAATATTTGTTTGCTCCGTAGTTTGAAGATGTAGTATAACTTTTATGACACAATATTTAATTTGTTTTTGTACATTTTTTGGTTCTGATTAATACGATTTTAAATGTACTTTCATGACATAAATTTTTTGTGGGGTGGACCCTAATATTATATACCTCTACTTTTAAACATTGGAAAGAAGAACCTACCTTTTCTTACTCGGGGATGGCTGGGTTGTTCCCAACATGATAGTTGAGTGGTTCAGGCATAGAATTAACAACATAGAGATCGTAATTTTCAGTGTGAGCCAACTTGCTAGCCTTGGTGGTACCTATGCTTGTGGTCTGGACCAGAGTCGACCTGCACGCAAGCTTGCTATGATACCAGGGTCTCCGAAAAATGAGTGATATTCAACTTCTTGATTTCTACGCTCGCAGTAATGAACTTTAAATAGTTGCCACCTAGTATAACTTAATATTCAAAGAATTAGAGAGCAAGGCTAATTATGTATTGTTTGGATGGCGCTTCCTTTACATAGACGTTTTGAGGAAAAGAAAATACTTGTCAGGTTATCTAAGTAGTTGACCAGCTGCATTTTTTTTCCTTCAGTATGAGTAAGAGTAGTTGACCAGCTCCATTATGGCTTGGGTTAGGAAGATTTATCCTGTCCTTAATTGTCAAACTTTAGTTTTGGAATCATCAGGTTAGATTTCTATTGTCTTTGCTAATATGACTAGATGAGTGTGGTTGCGAGCATACTACAATCATGTGTTTGCTTTTTGATGTAACGACAAATGGTGACCCATCTGAATATACTTTTCATATATGCTACTTGTCTCATTAATCTTTGAAGCATTCTTATTAATAATTTCACCAATATATTTGTCGTTTTGCAGAAAAAATGGTTTTGCTGTATGCAGAGCCCTCATGCAGAATCTTGACAATGTTGTGTAAAATCTGAATATAGGATGCATATTCATAATGAAACCCCACAACTTCTTTTGGATTGGTGCTGGAGACTGAGGCATTGCTCAAAGTCCCCTTTTGTCTTGTAAACTTGTGTTATATTGTTGGGGAAACAAAATATGAAAGACAAAAATGTTTGATGTTGTACCTATATGTTGTATCTTTTTATTTTACCTTTAGCAGACAAGCACATAGTGTGGTTTGTAAAGCACCTCTCAACCGTAAATTTTTCTTGTTGATTTCATGAG</genome_strand>
        <mrna_strand>GGAAAATTCTCATTCTCTATAGTTGGATTCATGTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGGTCGACCATTGCCTAAGTTTGGTGAATGGGATGTCAATGATCCAGCTTCTGCAGAGGGATTTACTGTGATTTTCAACAAGGCTAGGGATGAGAAAAAAACTGGTGGCAAGCCAGACTCACCATCAAAGACTGATGGTAATAGAAAGGAAGGAGAAGAACCTTTAAAACCTCAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAATGGTTTTGCTGTATGCAGAGCCCTCATGCAGAATCTTGACAATGTTGTGTAAAATCTGAATATAGGATGCATATTCATAATGAAACCCCACAACTTCTTTTGGATTGGTGCTGGAGACTGAGGCATTGCTCAAAGTCCCCTTTTGTCTTGTAAACTTGTGTTATATTGTTGGGGAAACAAAATATGAAAGACAAAAATGTTTGATGTTGTACCTATATGTTGTATCTTTTTATTTTACCTTTAGCAGACAAGCACATAGTGTGGTTTGTAAAGCACCTCTCAACCGTAAATTTTTCTTGTTGATTTCATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E540502" ref_strand="-" ref_description="SGN-E540502 [TUS-60-N1]">
      <seq>ggaaaattctcattctctatagttggattcatgtcggaaaagggtcgaccattgcctaagtttggtgaatgggatgtcaatgatccagcttctgcagagggatttactgtgattttcaacaaggctagggatgagaaaaaaactggtggcaagccagactcaccatcaaagactgatggtaatagaaaggaaggagaagaacctttaaaacctcaaactaaaaaatggttttgctgtatgcagagccctcatgcagaatcttgacaatgttgtgtaaaatctgaatataggatgcatattcataatgaaaccccacaacttcttttggattggtgctggagactgaggcattgctcaaagtccccttttgtcttgtaaacttgtgttatattgttggggaaacaaaatatgaaagacaaaaatgtttgatgttgtacctatatgttgtatctttttattttacctttagcagacaagcacatagtgtggtttgtaaagcacctctcaaccgtaaatttttcttgttgatttcaggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="34987" stop="40161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35287" g_stop="35322" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35323" i_stop="37482" i_length="2160">
            <donor d_prob="0.973" d_score="0.00"/>
            <acceptor a_prob="0.537" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37483" g_stop="37665" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="219" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37666" i_stop="39542" i_length="1877">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39543" g_stop="39855" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="532" r_length="313" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="536" polyA_stop="568"/>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E540502" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540502" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="35287" e_stop="35322"/>
          <exon e_start="37483" e_stop="37665"/>
          <exon e_start="39543" e_stop="39855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAATTCTCATTCTCTATAGTTGGATTCATGTCGGTATGTAATTTTTACTCAAGATTGATTTTTTAATCATCTTGATTATTTGTTTCTGTTTACTCGATTTCACTTGCCCCCCCCCCCCCCTTTTTTTGTTTTTTTCAATTTTTGTTAGCTGATGATGTGATATGTGTGTTGATCATGTGAATGGATGATTATGGTTTGTTTGTTTGGGGGGTTTATTGGGTTTTTATTTTTTGCTTAATGGGTTTTCATTGATGGGTTCATTTTGCTGAATTTGCTGGGTTTTTTTTTTTGAGTTTGAGTTTGATCGAGAATCTTGACTTTCAGCTAGATCCTGTATAGAGCTTGGTTTTGTTGAATTTTGGTCCTTGAAATTTTTGCTTTTCATTTTGGTATGACTTTGGATGGTTAAACTGAGCTGAAATGCCCCTACCCCTTTTTGAAAGGGGACAAGAAAGGGGCCAGTGGACTGCTATTGGAATGGAATGTTATGAGCTGGACTCTCGGTGACCTCATGGATCACTGCTATCCAGTTGGGTTTTGTTTATTTTCATTGAACCATGTGCAAAAGGAAAATTGTTTTTGCTTTGTTAGGTTGTTTAGTTTTTCGATAAAGCTTTGTTGGGTTCCTTTTATTGATGACAAAGGAACCAGCAGCCGCTATCCTTCGGGTGCACACAGGGTTCTCAAACTAGCCTCGTGCGATGAGCTCAACCCCTTGTCACAAGCTGGGGGTTTCGGTGGGTTCCTTATTACTAGTACTTTTTTTTAAAAAAAAAACTATTTTCCATGTGCTTTATATTCAAAGGGTAGTTCTTGATGTGATGTGATGACTGTCTTAAGATGTTTTAACTTCATAACTGCAATTACCCCATTTTCCCCTAATGTGGAGTCTACTTTTTGCAAAATATACACTTAGCTTAGTTACAACAACAACATACCTAGTGTAATCCACTAGTGGGGTCTCGGGGGAGTAGGATATGCACAGGCCTTACCTGCCCCTACTTTTTGTGGGGTACGTAGCTCAGTTACATATCTAATATGTATACGTTTATGCATACAGATGTTCCAACTTGAAGTGTACTTTTACTATCTCTGTGTCCATATAGGGATATTCAAGTTTAGAAGTTTCTTGGATGTGCTGATTAGATAGGCTCTTTCCTGCCAGTAGTGATAAGTTTTTGTTTTTTATGTTCAGTGTTTGAATTTGTTAAGTTGACTATTAGCTTGTTTTTTCAATAGAGAAAATATGGCGCACCCAAAGGGTAGCGGCTGCGGGTTCCCTTGTCATCGAAAAAAATAGAGAAAATCTGAATAGCTTGAAATTTTTGTATTGCATTGTTTCCTCTTGTGTGGATTTCATAAACCGTGTCAATGTATGTATTTCTAGTCTTTTCTCCTTTTAATGCTTTGATCTGCTCATGCATCAACTAATGGGAAAGTGTATATCTCCAGTTGGAGTTAAGTCAAGTGGTTTTTAGAAAGGTAGTTGACACTATGATGGTTTTGTTATGATCTTTAGAGTACATTTACCTTCCTTGATTTGTCATTGCCCTTTTAATGGCATTGAGGACTTGGATCATAGTGGTTTAAGAGCTTTTTAGAGGTAACATGCCAGCAATACCAGGGTACAATTTCTGGAATCAGTTTGATATGAATTCTAATTCATTTTAAGAAGAATTGAATTGACATTTTGTGGATGCATATTGTAGTTTTCCAGTTGCTGGAGACTTCATAATATTGAACATCAGCAGTTCTGATAATTTGGATATAGACTTCAGCAGGTGTTTTTTTCTTTTGTTCTCAAGTTGTTCGTACCTTCTCCACATCCTTTTTCAGTAGCAAAATTTTGAACCTTTGGTGAGATCAAAGGAATTTCAGAGTTGTCCATCACTTTGTGCATGCTTCCTAATGGATCAAGTTCGCATTTTCATGTAGTATTATAGATTTGGAGAATTTGGCCTTCTTCTCGTGTTGATTATGGGATGGAGTCATAGATATGTATTCTTGCACGTTATATCAACAAAATTGTAGTGGCATAATGATAATTTAGCTTCTTTCTCTGCGACTGCAATAGGATTTGTTCACAGTTCATTCATGAAATTACTCACTTGACTAATGGCAACTATACTGTATTCTTCTTTTGGTCCAATAATTTACCTTACATATTTGGCTTTCACATCTATCTTCAAGCAGGAAAAGGGTCGACCATTGCCTAAGTTTGGTGAATGGGATGTCAATGATCCAGCTTCTGCAGAGGGATTTACTGTGATTTTCAACAAGGCTAGGGATGAGAAAAAAACTGGTGGCAAGCCAGACTCACCATCAAAGACTGATGGTAATAGAAAGGAAGGAGAAGAACCTTTAAAACCTCAAACTGTAAGTTATTTTGATAACTTTTTCTCTGGATGAATATATTAAATGACTTATACCCTCTACACTTTTTGGTTGAAATGTTAAGAATTCTGCCCTTTGCTCTTCACATATTTAAACTGCCATTAGCTGTGTGATTCTGCATCTTCACAGAGAGACTATCCAGTCAGAGGATAATTCATTTATCAAATAGGTGATACGCCATCCCACTCTATGTCCCTCTCAAAACAGTTGAAGGACGCCAATATCCAATCTACAATATAATTATCCACTCTACACCAACTAAGCCACTTTCAGCTATCTTCTGCTGTCTCATATTTTCAAAATATTTTGGCTGTAATATAGTGAATTATATGTGCATGTTTATCAAAATTAAATTTCCATCACACTGTATAATCATCATTTAAGAATAATTTGCTAGACTAATGCAAAGGCTTCAGCTTAATTACTTTAAGATCCCGATCATTAACTTAACCAGTTATAGTTTAGAACACATGGTAGTAGGTATTTTAGGCTGATGGCAATTCTTGTTGTGTGGAGAACTTCCCTTTGGCTGTGAGCATCAGTAAATTCTTATTGTATAGTGGTCAGATCATATACACTCTATTGGAACTCCAAGTGGAACTTCCTGTATAAGCATAGGATTAAAACCATCATTTAGGGAACTCATGTAATTTATTTGCTCTAATCAATCTTCGCTTCTAGTCAACTATCTAAGGAAAAGATATGTGAGGCAATGTTTCTTGGGAATCCTCTAGGATTTTCTAGATGTGACGTAGGCTTCTAAACGCATGAGGGCAACCATGAAGAGCAGAAGTTTTATAGGGATAACACCTTGACATTTGTAGCTTTCATCTTATGCATACTATTCATATTGGTTGTCTGCCTTGTATGTCTCTAGACCTCAAGTTCACTTTACAACTTTGATAGTTCATCTTGTACGTACTAAGACTGTAAGACGATAACTTAGCTTTTCATTATAAGTGTTAAACTATTAACTTCTTTAATTAATATTTGTTTGCTCCGTAGTTTGAAGATGTAGTATAACTTTTATGACACAATATTTAATTTGTTTTTGTACATTTTTTGGTTCTGATTAATACGATTTTAAATGTACTTTCATGACATAAATTTTTTGTGGGGTGGACCCTAATATTATATACCTCTACTTTTAAACATTGGAAAGAAGAACCTACCTTTTCTTACTCGGGGATGGCTGGGTTGTTCCCAACATGATAGTTGAGTGGTTCAGGCATAGAATTAACAACATAGAGATCGTAATTTTCAGTGTGAGCCAACTTGCTAGCCTTGGTGGTACCTATGCTTGTGGTCTGGACCAGAGTCGACCTGCACGCAAGCTTGCTATGATACCAGGGTCTCCGAAAAATGAGTGATATTCAACTTCTTGATTTCTACGCTCGCAGTAATGAACTTTAAATAGTTGCCACCTAGTATAACTTAATATTCAAAGAATTAGAGAGCAAGGCTAATTATGTATTGTTTGGATGGCGCTTCCTTTACATAGACGTTTTGAGGAAAAGAAAATACTTGTCAGGTTATCTAAGTAGTTGACCAGCTGCATTTTTTTTCCTTCAGTATGAGTAAGAGTAGTTGACCAGCTCCATTATGGCTTGGGTTAGGAAGATTTATCCTGTCCTTAATTGTCAAACTTTAGTTTTGGAATCATCAGGTTAGATTTCTATTGTCTTTGCTAATATGACTAGATGAGTGTGGTTGCGAGCATACTACAATCATGTGTTTGCTTTTTGATGTAACGACAAATGGTGACCCATCTGAATATACTTTTCATATATGCTACTTGTCTCATTAATCTTTGAAGCATTCTTATTAATAATTTCACCAATATATTTGTCGTTTTGCAGAAAAAATGGTTTTGCTGTATGCAGAGCCCTCATGCAGAATCTTGACAATGTTGTGTAAAATCTGAATATAGGATGCATATTCATAATGAAACCCCACAACTTCTTTTGGATTGGTGCTGGAGACTGAGGCATTGCTCAAAGTCCCCTTTTGTCTTGTAAACTTGTGTTATATTGTTGGGGAAACAAAATATGAAAGACAAAAATGTTTGATGTTGTACCTATATGTTGTATCTTTTTATTTTACCTTTAGCAGACAAGCACATAGTGTGGTTTGTAAAGCACCTCTCAACCGTAAATTTTTCTTGTTGATTTC</genome_strand>
        <mrna_strand>GGAAAATTCTCATTCTCTATAGTTGGATTCATGTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGGTCGACCATTGCCTAAGTTTGGTGAATGGGATGTCAATGATCCAGCTTCTGCAGAGGGATTTACTGTGATTTTCAACAAGGCTAGGGATGAGAAAAAAACTGGTGGCAAGCCAGACTCACCATCAAAGACTGATGGTAATAGAAAGGAAGGAGAAGAACCTTTAAAACCTCAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAATGGTTTTGCTGTATGCAGAGCCCTCATGCAGAATCTTGACAATGTTGTGTAAAATCTGAATATAGGATGCATATTCATAATGAAACCCCACAACTTCTTTTGGATTGGTGCTGGAGACTGAGGCATTGCTCAAAGTCCCCTTTTGTCTTGTAAACTTGTGTTATATTGTTGGGGAAACAAAATATGAAAGACAAAAATGTTTGATGTTGTACCTATATGTTGTATCTTTTTATTTTACCTTTAGCAGACAAGCACATAGTGTGGTTTGTAAAGCACCTCTCAACCGTAAATTTTTCTTGTTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E289308" ref_strand="+" ref_description="SGN-E289308 [cLES-18-N13]">
      <seq>gaaaattctcattctctatagttggattcatgtcggaaaagggtcgaccattgcctaagtttggtgaatgggatgtcaatgatccagcttctgcagagggatttactgtgattttcaacaaggctagggatgagaaaaaaactggtggcaagccagactcaccatcaaagactgatggtaatagaaaggaaggagaagaacctttaaaacctcaaactaaaaaatggttttgctgtatgcagagccctcatgcagaatcttgacaatgttgtgtaaaatctgaatataggatgcatattcataatgaaaccccacaacttcttttggattggtgctggagactgaggcattgctcaaagtccccttttgtcttgtaaacttgtgttatattgttggggaaacaaaatatgaaagacaaaaatgtttgatgttgtacctatatgttgtatctttttattttacctttagcagacaagcacatagtgtggtttgtaaagcacctctcaaccgtaaatttttcttgttgatttcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="34988" stop="40159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35288" g_stop="35322" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35323" i_stop="37482" i_length="2160">
            <donor d_prob="0.973" d_score="0.00"/>
            <acceptor a_prob="0.537" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37483" g_stop="37665" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="218" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37666" i_stop="39542" i_length="1877">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39543" g_stop="39859" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="535" r_length="317" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E289308" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35288" e_stop="35322"/>
          <exon e_start="37483" e_stop="37665"/>
          <exon e_start="39543" e_stop="39859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATTCTCATTCTCTATAGTTGGATTCATGTCGGTATGTAATTTTTACTCAAGATTGATTTTTTAATCATCTTGATTATTTGTTTCTGTTTACTCGATTTCACTTGCCCCCCCCCCCCCCTTTTTTTGTTTTTTTCAATTTTTGTTAGCTGATGATGTGATATGTGTGTTGATCATGTGAATGGATGATTATGGTTTGTTTGTTTGGGGGGTTTATTGGGTTTTTATTTTTTGCTTAATGGGTTTTCATTGATGGGTTCATTTTGCTGAATTTGCTGGGTTTTTTTTTTTGAGTTTGAGTTTGATCGAGAATCTTGACTTTCAGCTAGATCCTGTATAGAGCTTGGTTTTGTTGAATTTTGGTCCTTGAAATTTTTGCTTTTCATTTTGGTATGACTTTGGATGGTTAAACTGAGCTGAAATGCCCCTACCCCTTTTTGAAAGGGGACAAGAAAGGGGCCAGTGGACTGCTATTGGAATGGAATGTTATGAGCTGGACTCTCGGTGACCTCATGGATCACTGCTATCCAGTTGGGTTTTGTTTATTTTCATTGAACCATGTGCAAAAGGAAAATTGTTTTTGCTTTGTTAGGTTGTTTAGTTTTTCGATAAAGCTTTGTTGGGTTCCTTTTATTGATGACAAAGGAACCAGCAGCCGCTATCCTTCGGGTGCACACAGGGTTCTCAAACTAGCCTCGTGCGATGAGCTCAACCCCTTGTCACAAGCTGGGGGTTTCGGTGGGTTCCTTATTACTAGTACTTTTTTTTAAAAAAAAAACTATTTTCCATGTGCTTTATATTCAAAGGGTAGTTCTTGATGTGATGTGATGACTGTCTTAAGATGTTTTAACTTCATAACTGCAATTACCCCATTTTCCCCTAATGTGGAGTCTACTTTTTGCAAAATATACACTTAGCTTAGTTACAACAACAACATACCTAGTGTAATCCACTAGTGGGGTCTCGGGGGAGTAGGATATGCACAGGCCTTACCTGCCCCTACTTTTTGTGGGGTACGTAGCTCAGTTACATATCTAATATGTATACGTTTATGCATACAGATGTTCCAACTTGAAGTGTACTTTTACTATCTCTGTGTCCATATAGGGATATTCAAGTTTAGAAGTTTCTTGGATGTGCTGATTAGATAGGCTCTTTCCTGCCAGTAGTGATAAGTTTTTGTTTTTTATGTTCAGTGTTTGAATTTGTTAAGTTGACTATTAGCTTGTTTTTTCAATAGAGAAAATATGGCGCACCCAAAGGGTAGCGGCTGCGGGTTCCCTTGTCATCGAAAAAAATAGAGAAAATCTGAATAGCTTGAAATTTTTGTATTGCATTGTTTCCTCTTGTGTGGATTTCATAAACCGTGTCAATGTATGTATTTCTAGTCTTTTCTCCTTTTAATGCTTTGATCTGCTCATGCATCAACTAATGGGAAAGTGTATATCTCCAGTTGGAGTTAAGTCAAGTGGTTTTTAGAAAGGTAGTTGACACTATGATGGTTTTGTTATGATCTTTAGAGTACATTTACCTTCCTTGATTTGTCATTGCCCTTTTAATGGCATTGAGGACTTGGATCATAGTGGTTTAAGAGCTTTTTAGAGGTAACATGCCAGCAATACCAGGGTACAATTTCTGGAATCAGTTTGATATGAATTCTAATTCATTTTAAGAAGAATTGAATTGACATTTTGTGGATGCATATTGTAGTTTTCCAGTTGCTGGAGACTTCATAATATTGAACATCAGCAGTTCTGATAATTTGGATATAGACTTCAGCAGGTGTTTTTTTCTTTTGTTCTCAAGTTGTTCGTACCTTCTCCACATCCTTTTTCAGTAGCAAAATTTTGAACCTTTGGTGAGATCAAAGGAATTTCAGAGTTGTCCATCACTTTGTGCATGCTTCCTAATGGATCAAGTTCGCATTTTCATGTAGTATTATAGATTTGGAGAATTTGGCCTTCTTCTCGTGTTGATTATGGGATGGAGTCATAGATATGTATTCTTGCACGTTATATCAACAAAATTGTAGTGGCATAATGATAATTTAGCTTCTTTCTCTGCGACTGCAATAGGATTTGTTCACAGTTCATTCATGAAATTACTCACTTGACTAATGGCAACTATACTGTATTCTTCTTTTGGTCCAATAATTTACCTTACATATTTGGCTTTCACATCTATCTTCAAGCAGGAAAAGGGTCGACCATTGCCTAAGTTTGGTGAATGGGATGTCAATGATCCAGCTTCTGCAGAGGGATTTACTGTGATTTTCAACAAGGCTAGGGATGAGAAAAAAACTGGTGGCAAGCCAGACTCACCATCAAAGACTGATGGTAATAGAAAGGAAGGAGAAGAACCTTTAAAACCTCAAACTGTAAGTTATTTTGATAACTTTTTCTCTGGATGAATATATTAAATGACTTATACCCTCTACACTTTTTGGTTGAAATGTTAAGAATTCTGCCCTTTGCTCTTCACATATTTAAACTGCCATTAGCTGTGTGATTCTGCATCTTCACAGAGAGACTATCCAGTCAGAGGATAATTCATTTATCAAATAGGTGATACGCCATCCCACTCTATGTCCCTCTCAAAACAGTTGAAGGACGCCAATATCCAATCTACAATATAATTATCCACTCTACACCAACTAAGCCACTTTCAGCTATCTTCTGCTGTCTCATATTTTCAAAATATTTTGGCTGTAATATAGTGAATTATATGTGCATGTTTATCAAAATTAAATTTCCATCACACTGTATAATCATCATTTAAGAATAATTTGCTAGACTAATGCAAAGGCTTCAGCTTAATTACTTTAAGATCCCGATCATTAACTTAACCAGTTATAGTTTAGAACACATGGTAGTAGGTATTTTAGGCTGATGGCAATTCTTGTTGTGTGGAGAACTTCCCTTTGGCTGTGAGCATCAGTAAATTCTTATTGTATAGTGGTCAGATCATATACACTCTATTGGAACTCCAAGTGGAACTTCCTGTATAAGCATAGGATTAAAACCATCATTTAGGGAACTCATGTAATTTATTTGCTCTAATCAATCTTCGCTTCTAGTCAACTATCTAAGGAAAAGATATGTGAGGCAATGTTTCTTGGGAATCCTCTAGGATTTTCTAGATGTGACGTAGGCTTCTAAACGCATGAGGGCAACCATGAAGAGCAGAAGTTTTATAGGGATAACACCTTGACATTTGTAGCTTTCATCTTATGCATACTATTCATATTGGTTGTCTGCCTTGTATGTCTCTAGACCTCAAGTTCACTTTACAACTTTGATAGTTCATCTTGTACGTACTAAGACTGTAAGACGATAACTTAGCTTTTCATTATAAGTGTTAAACTATTAACTTCTTTAATTAATATTTGTTTGCTCCGTAGTTTGAAGATGTAGTATAACTTTTATGACACAATATTTAATTTGTTTTTGTACATTTTTTGGTTCTGATTAATACGATTTTAAATGTACTTTCATGACATAAATTTTTTGTGGGGTGGACCCTAATATTATATACCTCTACTTTTAAACATTGGAAAGAAGAACCTACCTTTTCTTACTCGGGGATGGCTGGGTTGTTCCCAACATGATAGTTGAGTGGTTCAGGCATAGAATTAACAACATAGAGATCGTAATTTTCAGTGTGAGCCAACTTGCTAGCCTTGGTGGTACCTATGCTTGTGGTCTGGACCAGAGTCGACCTGCACGCAAGCTTGCTATGATACCAGGGTCTCCGAAAAATGAGTGATATTCAACTTCTTGATTTCTACGCTCGCAGTAATGAACTTTAAATAGTTGCCACCTAGTATAACTTAATATTCAAAGAATTAGAGAGCAAGGCTAATTATGTATTGTTTGGATGGCGCTTCCTTTACATAGACGTTTTGAGGAAAAGAAAATACTTGTCAGGTTATCTAAGTAGTTGACCAGCTGCATTTTTTTTCCTTCAGTATGAGTAAGAGTAGTTGACCAGCTCCATTATGGCTTGGGTTAGGAAGATTTATCCTGTCCTTAATTGTCAAACTTTAGTTTTGGAATCATCAGGTTAGATTTCTATTGTCTTTGCTAATATGACTAGATGAGTGTGGTTGCGAGCATACTACAATCATGTGTTTGCTTTTTGATGTAACGACAAATGGTGACCCATCTGAATATACTTTTCATATATGCTACTTGTCTCATTAATCTTTGAAGCATTCTTATTAATAATTTCACCAATATATTTGTCGTTTTGCAGAAAAAATGGTTTTGCTGTATGCAGAGCCCTCATGCAGAATCTTGACAATGTTGTGTAAAATCTGAATATAGGATGCATATTCATAATGAAACCCCACAACTTCTTTTGGATTGGTGCTGGAGACTGAGGCATTGCTCAAAGTCCCCTTTTGTCTTGTAAACTTGTGTTATATTGTTGGGGAAACAAAATATGAAAGACAAAAATGTTTGATGTTGTACCTATATGTTGTATCTTTTTATTTTACCTTTAGCAGACAAGCACATAGTGTGGTTTGTAAAGCACCTCTCAACCGTAAATTTTTCTTGTTGATTTCATGA</genome_strand>
        <mrna_strand>GAAAATTCTCATTCTCTATAGTTGGATTCATGTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGGTCGACCATTGCCTAAGTTTGGTGAATGGGATGTCAATGATCCAGCTTCTGCAGAGGGATTTACTGTGATTTTCAACAAGGCTAGGGATGAGAAAAAAACTGGTGGCAAGCCAGACTCACCATCAAAGACTGATGGTAATAGAAAGGAAGGAGAAGAACCTTTAAAACCTCAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAATGGTTTTGCTGTATGCAGAGCCCTCATGCAGAATCTTGACAATGTTGTGTAAAATCTGAATATAGGATGCATATTCATAATGAAACCCCACAACTTCTTTTGGATTGGTGCTGGAGACTGAGGCATTGCTCAAAGTCCCCTTTTGTCTTGTAAACTTGTGTTATATTGTTGGGGAAACAAAATATGAAAGACAAAAATGTTTGATGTTGTACCTATATGTTGTATCTTTTTATTTTACCTTTAGCAGACAAGCACATAGTGTGGTTTGTAAAGCACCTCTCAACCGTAAATTTTTCTTGTTGATTTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E290665" ref_strand="+" ref_description="SGN-E290665 [cLET-10-G21]">
      <seq>tgtcngaaaagggtcgaccattgcctaagtttggtgaatgggatgtcaatgatccagcttctgcagagggatttactgtgattttcaacaaggctagggatgagaaaaaaactggtggcaagccagactcaccatcaaagactgatggtaatagaaaggaaggagaagaacctttaaaacctcaaactaaaaaatggttttgctgtatgcagagccctcatgcagaatcttgacaatgttgtgtaaaatctgaatataggatgcatattcataatgaaaccccacaacttcttttggattggtgctggagactgaggcattgctcaaagtccccttttgtcttgtaaacttgtgttatattgttggggaaacaaaatatgaaagacaaaaatgtttgatgttgtacctatatgttgtatctttttattttacctttagcagacaagcacatagtgtggtttgtaaagcacctctcaaccgtaaatttttcttgttgatttcntgagaaaaagaaagaannaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="37183" stop="40166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37483" g_stop="37665" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="188" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37666" i_stop="39542" i_length="1877">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39543" g_stop="39860" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="506" r_length="318" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E290665" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37483" e_stop="37665"/>
          <exon e_start="39543" e_stop="39860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGGGTCGACCATTGCCTAAGTTTGGTGAATGGGATGTCAATGATCCAGCTTCTGCAGAGGGATTTACTGTGATTTTCAACAAGGCTAGGGATGAGAAAAAAACTGGTGGCAAGCCAGACTCACCATCAAAGACTGATGGTAATAGAAAGGAAGGAGAAGAACCTTTAAAACCTCAAACTGTAAGTTATTTTGATAACTTTTTCTCTGGATGAATATATTAAATGACTTATACCCTCTACACTTTTTGGTTGAAATGTTAAGAATTCTGCCCTTTGCTCTTCACATATTTAAACTGCCATTAGCTGTGTGATTCTGCATCTTCACAGAGAGACTATCCAGTCAGAGGATAATTCATTTATCAAATAGGTGATACGCCATCCCACTCTATGTCCCTCTCAAAACAGTTGAAGGACGCCAATATCCAATCTACAATATAATTATCCACTCTACACCAACTAAGCCACTTTCAGCTATCTTCTGCTGTCTCATATTTTCAAAATATTTTGGCTGTAATATAGTGAATTATATGTGCATGTTTATCAAAATTAAATTTCCATCACACTGTATAATCATCATTTAAGAATAATTTGCTAGACTAATGCAAAGGCTTCAGCTTAATTACTTTAAGATCCCGATCATTAACTTAACCAGTTATAGTTTAGAACACATGGTAGTAGGTATTTTAGGCTGATGGCAATTCTTGTTGTGTGGAGAACTTCCCTTTGGCTGTGAGCATCAGTAAATTCTTATTGTATAGTGGTCAGATCATATACACTCTATTGGAACTCCAAGTGGAACTTCCTGTATAAGCATAGGATTAAAACCATCATTTAGGGAACTCATGTAATTTATTTGCTCTAATCAATCTTCGCTTCTAGTCAACTATCTAAGGAAAAGATATGTGAGGCAATGTTTCTTGGGAATCCTCTAGGATTTTCTAGATGTGACGTAGGCTTCTAAACGCATGAGGGCAACCATGAAGAGCAGAAGTTTTATAGGGATAACACCTTGACATTTGTAGCTTTCATCTTATGCATACTATTCATATTGGTTGTCTGCCTTGTATGTCTCTAGACCTCAAGTTCACTTTACAACTTTGATAGTTCATCTTGTACGTACTAAGACTGTAAGACGATAACTTAGCTTTTCATTATAAGTGTTAAACTATTAACTTCTTTAATTAATATTTGTTTGCTCCGTAGTTTGAAGATGTAGTATAACTTTTATGACACAATATTTAATTTGTTTTTGTACATTTTTTGGTTCTGATTAATACGATTTTAAATGTACTTTCATGACATAAATTTTTTGTGGGGTGGACCCTAATATTATATACCTCTACTTTTAAACATTGGAAAGAAGAACCTACCTTTTCTTACTCGGGGATGGCTGGGTTGTTCCCAACATGATAGTTGAGTGGTTCAGGCATAGAATTAACAACATAGAGATCGTAATTTTCAGTGTGAGCCAACTTGCTAGCCTTGGTGGTACCTATGCTTGTGGTCTGGACCAGAGTCGACCTGCACGCAAGCTTGCTATGATACCAGGGTCTCCGAAAAATGAGTGATATTCAACTTCTTGATTTCTACGCTCGCAGTAATGAACTTTAAATAGTTGCCACCTAGTATAACTTAATATTCAAAGAATTAGAGAGCAAGGCTAATTATGTATTGTTTGGATGGCGCTTCCTTTACATAGACGTTTTGAGGAAAAGAAAATACTTGTCAGGTTATCTAAGTAGTTGACCAGCTGCATTTTTTTTCCTTCAGTATGAGTAAGAGTAGTTGACCAGCTCCATTATGGCTTGGGTTAGGAAGATTTATCCTGTCCTTAATTGTCAAACTTTAGTTTTGGAATCATCAGGTTAGATTTCTATTGTCTTTGCTAATATGACTAGATGAGTGTGGTTGCGAGCATACTACAATCATGTGTTTGCTTTTTGATGTAACGACAAATGGTGACCCATCTGAATATACTTTTCATATATGCTACTTGTCTCATTAATCTTTGAAGCATTCTTATTAATAATTTCACCAATATATTTGTCGTTTTGCAGAAAAAATGGTTTTGCTGTATGCAGAGCCCTCATGCAGAATCTTGACAATGTTGTGTAAAATCTGAATATAGGATGCATATTCATAATGAAACCCCACAACTTCTTTTGGATTGGTGCTGGAGACTGAGGCATTGCTCAAAGTCCCCTTTTGTCTTGTAAACTTGTGTTATATTGTTGGGGAAACAAAATATGAAAGACAAAAATGTTTGATGTTGTACCTATATGTTGTATCTTTTTATTTTACCTTTAGCAGACAAGCACATAGTGTGGTTTGTAAAGCACCTCTCAACCGTAAATTTTTCTTGTTGATTTCATGAG</genome_strand>
        <mrna_strand>GAAAAGGGTCGACCATTGCCTAAGTTTGGTGAATGGGATGTCAATGATCCAGCTTCTGCAGAGGGATTTACTGTGATTTTCAACAAGGCTAGGGATGAGAAAAAAACTGGTGGCAAGCCAGACTCACCATCAAAGACTGATGGTAATAGAAAGGAAGGAGAAGAACCTTTAAAACCTCAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAATGGTTTTGCTGTATGCAGAGCCCTCATGCAGAATCTTGACAATGTTGTGTAAAATCTGAATATAGGATGCATATTCATAATGAAACCCCACAACTTCTTTTGGATTGGTGCTGGAGACTGAGGCATTGCTCAAAGTCCCCTTTTGTCTTGTAAACTTGTGTTATATTGTTGGGGAAACAAAATATGAAAGACAAAAATGTTTGATGTTGTACCTATATGTTGTATCTTTTTATTTTACCTTTAGCAGACAAGCACATAGTGTGGTTTGTAAAGCACCTCTCAACCGTAAATTTTTCTTGTTGATTTCNTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E278854" ref_strand="-" ref_description="SGN-E278854 [cLER-2-J12]">
      <seq>agactcaccatcaaagactgatggtaatagaaaggaaggagaagaacctttaaaacctcaaactaaaaaatggttttgctgtatgcagagccctcatgcagaatcttgacaatgttgtgtaaaatctgaatataggatgcatattcataatgaaaccccacaacttcttttggattggtgctggagactgaggcattgctcaaagtccccttttgtcttgtaaacttgtgttatattgttggggaaacaaaatatgaaagacaaaaatgtttgatgttgtacctatatgttgtatctttttattttacctttagcagacaagcacatagtgtggtttgtaaagcacctctcaaccgtaaatttttcttgttgatttcatgagatcatgttgtttttgcctaataagtagaaaatgcatcgtagaacttcctaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="37302" stop="40210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37602" g_stop="37665" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37666" i_stop="39542" i_length="1877">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39543" g_stop="39909" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="431" r_length="367" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="432" polyA_stop="450"/>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E278854" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278854" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="37602" e_stop="37665"/>
          <exon e_start="39543" e_stop="39909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTCACCATCAAAGACTGATGGTAATAGAAAGGAAGGAGAAGAACCTTTAAAACCTCAAACTGTAAGTTATTTTGATAACTTTTTCTCTGGATGAATATATTAAATGACTTATACCCTCTACACTTTTTGGTTGAAATGTTAAGAATTCTGCCCTTTGCTCTTCACATATTTAAACTGCCATTAGCTGTGTGATTCTGCATCTTCACAGAGAGACTATCCAGTCAGAGGATAATTCATTTATCAAATAGGTGATACGCCATCCCACTCTATGTCCCTCTCAAAACAGTTGAAGGACGCCAATATCCAATCTACAATATAATTATCCACTCTACACCAACTAAGCCACTTTCAGCTATCTTCTGCTGTCTCATATTTTCAAAATATTTTGGCTGTAATATAGTGAATTATATGTGCATGTTTATCAAAATTAAATTTCCATCACACTGTATAATCATCATTTAAGAATAATTTGCTAGACTAATGCAAAGGCTTCAGCTTAATTACTTTAAGATCCCGATCATTAACTTAACCAGTTATAGTTTAGAACACATGGTAGTAGGTATTTTAGGCTGATGGCAATTCTTGTTGTGTGGAGAACTTCCCTTTGGCTGTGAGCATCAGTAAATTCTTATTGTATAGTGGTCAGATCATATACACTCTATTGGAACTCCAAGTGGAACTTCCTGTATAAGCATAGGATTAAAACCATCATTTAGGGAACTCATGTAATTTATTTGCTCTAATCAATCTTCGCTTCTAGTCAACTATCTAAGGAAAAGATATGTGAGGCAATGTTTCTTGGGAATCCTCTAGGATTTTCTAGATGTGACGTAGGCTTCTAAACGCATGAGGGCAACCATGAAGAGCAGAAGTTTTATAGGGATAACACCTTGACATTTGTAGCTTTCATCTTATGCATACTATTCATATTGGTTGTCTGCCTTGTATGTCTCTAGACCTCAAGTTCACTTTACAACTTTGATAGTTCATCTTGTACGTACTAAGACTGTAAGACGATAACTTAGCTTTTCATTATAAGTGTTAAACTATTAACTTCTTTAATTAATATTTGTTTGCTCCGTAGTTTGAAGATGTAGTATAACTTTTATGACACAATATTTAATTTGTTTTTGTACATTTTTTGGTTCTGATTAATACGATTTTAAATGTACTTTCATGACATAAATTTTTTGTGGGGTGGACCCTAATATTATATACCTCTACTTTTAAACATTGGAAAGAAGAACCTACCTTTTCTTACTCGGGGATGGCTGGGTTGTTCCCAACATGATAGTTGAGTGGTTCAGGCATAGAATTAACAACATAGAGATCGTAATTTTCAGTGTGAGCCAACTTGCTAGCCTTGGTGGTACCTATGCTTGTGGTCTGGACCAGAGTCGACCTGCACGCAAGCTTGCTATGATACCAGGGTCTCCGAAAAATGAGTGATATTCAACTTCTTGATTTCTACGCTCGCAGTAATGAACTTTAAATAGTTGCCACCTAGTATAACTTAATATTCAAAGAATTAGAGAGCAAGGCTAATTATGTATTGTTTGGATGGCGCTTCCTTTACATAGACGTTTTGAGGAAAAGAAAATACTTGTCAGGTTATCTAAGTAGTTGACCAGCTGCATTTTTTTTCCTTCAGTATGAGTAAGAGTAGTTGACCAGCTCCATTATGGCTTGGGTTAGGAAGATTTATCCTGTCCTTAATTGTCAAACTTTAGTTTTGGAATCATCAGGTTAGATTTCTATTGTCTTTGCTAATATGACTAGATGAGTGTGGTTGCGAGCATACTACAATCATGTGTTTGCTTTTTGATGTAACGACAAATGGTGACCCATCTGAATATACTTTTCATATATGCTACTTGTCTCATTAATCTTTGAAGCATTCTTATTAATAATTTCACCAATATATTTGTCGTTTTGCAGAAAAAATGGTTTTGCTGTATGCAGAGCCCTCATGCAGAATCTTGACAATGTTGTGTAAAATCTGAATATAGGATGCATATTCATAATGAAACCCCACAACTTCTTTTGGATTGGTGCTGGAGACTGAGGCATTGCTCAAAGTCCCCTTTTGTCTTGTAAACTTGTGTTATATTGTTGGGGAAACAAAATATGAAAGACAAAAATGTTTGATGTTGTACCTATATGTTGTATCTTTTTATTTTACCTTTAGCAGACAAGCACATAGTGTGGTTTGTAAAGCACCTCTCAACCGTAAATTTTTCTTGTTGATTTCATGAGATCATGTTGTTTTTGCCTAATAAGTAGAAAATGCATCGTAGAACTTCCT</genome_strand>
        <mrna_strand>AGACTCACCATCAAAGACTGATGGTAATAGAAAGGAAGGAGAAGAACCTTTAAAACCTCAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAATGGTTTTGCTGTATGCAGAGCCCTCATGCAGAATCTTGACAATGTTGTGTAAAATCTGAATATAGGATGCATATTCATAATGAAACCCCACAACTTCTTTTGGATTGGTGCTGGAGACTGAGGCATTGCTCAAAGTCCCCTTTTGTCTTGTAAACTTGTGTTATATTGTTGGGGAAACAAAATATGAAAGACAAAAATGTTTGATGTTGTACCTATATGTTGTATCTTTTTATTTTACCTTTAGCAGACAAGCACATAGTGTGGTTTGTAAAGCACCTCTCAACCGTAAATTTTTCTTGTTGATTTCATGAGATCATGTTGTTTTTGCCTAATAAGTAGAAAATGCATCGTAGAACTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E290698" ref_strand="+" ref_description="SGN-E290698 [cLET-10-C14]">
      <seq>agagccgtctacaaagctttgctcgagtcttctgctctcattggcgttagcattctacaagtctaccttctaaagcatcttttcgaacgaaagctggggcaatccagagtttaggttttgacagaactgaagatatttatactgctgatcatctttgaacttcaaatgcattccctttatgtactgtaaaaactagaatgaacagtttttgccagagattaaagtttttatatttcctttagttgaatgttgaaagctcaataatctcaaatgaaaaattccaattcttttggaaatttaatttggttgggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="40884" stop="16816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40584" g_stop="40275" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40274" i_stop="39787" i_length="488">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.182" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39786" g_stop="39761" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="335" r_length="26" r_score="0.654"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39760" i_stop="39311" i_length="450">
            <donor d_prob="0.877" d_score="0.00"/>
            <acceptor a_prob="0.485" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39310" g_stop="39303" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="343" r_length="8" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E290698" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40584" e_stop="40275"/>
          <exon e_start="39786" e_stop="39761"/>
          <exon e_start="39310" e_stop="39303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCCGTCTACAAAGCTTTGCTCGAGTCTTCTGCTCTCATTGGCGTTAGCATTCTACAAGTCTACCTTCTAAAGCATCTTTTCGAACGAAAGCTGGGGCAATCCAGAGTTTAGGTTTTGACAGAACTGAAGATATTTATACTGCTGATCATCTTTGAACTTCAAATGCATTCCCTTTATGTACTGTAAAAACTAGAATGAACAGTTTTTGCCAGAGATTAAAGTTTTTATATTTCCTTTAGTTGAATGTTGAAAGCTCAATAATCTCAAATGAAAAATTACAATTCCTTTTGGAATTTTATTTTGTTTGGTAAATTCTGTTGAAACAACATTGATGTTGACAAACACAGTTTTGAAATAAACAAAAAACAACTACATTGGCAAACCACAACTGGCAAGTTAATAGAAACAAAAAGTTTTGACATTCAAAAATAAAATGGTTGTGCATTCATATTCAGACGTTTTAACTTGGCTTCACGAGCTCAAAACTCTAGTCTGCATCTTCAGTCATGTCTATTTCACGGAGCCTCTCTCCGAGACCATATCCATTTTTCACTTAACAAACACATAAATAGGAATATGAACTACATATAATGAGGCCTCATGAGCTCAATACACTAGGCGACGTCTATTTCAATACCATGTCCATATATTTCACCAAGCAAACACACAAATAGGAAGTTCTACGATGCATTTTCTACTTATTAGGCAAAAACAACATGATCTCATGAAATCAACAAGAAAAATTTACGGTTGAGAGGTGCTTTACAAACCACACTATGTGCTTGTCTGCTAAAGGTAAAATAAAAAGATACAACATATAGGTACAACATCAAACATTTTTGTCTTTCATATTTTGTTTCCCCAACAATATAACACAAGTTTACAAGACAAAAGGGGACTTTGAGCAATGCCTCAGTCTCCAGCACCAATCCAAAAGAAGTTGTGGGGTTTCATTATGAATATGCATCCTATATTCAGATTTTACACAACATTGTCAAGATTCTGCATGAGGGCTCTGCATACAGCAAAACCATTTTTTCTGCAAAACGACAAATATATTGGTGAAATTATTAATAAGAATGCTTCAAAGATTAATGAGACAAGTAGCATATATGAAAAGTATATTCAGATGGGTCACCATTTGTCGTTACATCAAAAAGCAAACACATGATTGTAGTATGCTCGCAACCACACTCATCTAGTCATATTAGCAAAGACAATAGAAATCTAACCTGATGATTCCAAAACTAAAGTTTGACAATTAAGGACAGGATAAATC</genome_strand>
        <mrna_strand>AGAGCCGTCTACAAAGCTTTGCTCGAGTCTTCTGCTCTCATTGGCGTTAGCATTCTACAAGTCTACCTTCTAAAGCATCTTTTCGAACGAAAGCTGGGGCAATCCAGAGTTTAGGTTTTGACAGAACTGAAGATATTTATACTGCTGATCATCTTTGAACTTCAAATGCATTCCCTTTATGTACTGTAAAAACTAGAATGAACAGTTTTTGCCAGAGATTAAAGTTTTTATATTTCCTTTAGTTGAATGTTGAAAGCTCAATAATCTCAAATGAAAAATTCCAATT-CTTTTGGAAATTTAATTTGGTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAAAAAAAAAAAAAAAAAAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E714385" ref_strand="+" ref_description="SGN-E714385 [FB11BC01]">
      <seq>gtttttcacataaagttcaaatgggagaatcagtccatttttcgtttgttgttatcaaatcagaaggttcttggcattatagtgaagagggtgttgaccttgtggtgaagggaccttccggggagcagcttcatgattttcgtgacaaaataagtgagaagaacgagtttgtggcccatcatgaaggagtttatcgtttctgtttcaccaacaagtcaccctatcatgaaaccatagactttgatctacatgctgcccacttctcataccacgacgagcacgcaaaagatgagcatttcaaaccgttgtttgagcacattggacaactagaggaagctttatacaacattcagtttgagcagcattggctcgaggcccagacagaccgacaagcaatagtgaatgaaataatgagcaaaagagccgtctacaaagctttgctcgagtcttctgctctcattggcgttagcattctacaagtctaccttctaaagcatcttttcgaacgaaagctggggcaatccagagtttaggttttgacagaactgaagatatttatactgctgatcatctttgaacttcaaatgcattccctttatgtactgtaaaaactagaatgaacagtttttgccagagattaaagtttttatatttcctttagttgaatgttgaaagctcaataatctcaaatgaaaaattacaattccttttggaattttattttgtttggtaaaaaaaaaaaaaaaaaaaaaaactccggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="43808" stop="16809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43508" g_stop="43405" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43404" i_stop="41755" i_length="1650">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41754" g_stop="41568" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="291" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41567" i_stop="41485" i_length="83">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41484" g_stop="41377" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="399" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41376" i_stop="40605" i_length="772">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40604" g_stop="40275" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="729" r_length="330" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40274" i_stop="39787" i_length="488">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.182" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39786" g_stop="39761" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="753" r_length="24" r_score="0.692"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39760" i_stop="39583" i_length="178">
            <donor d_prob="0.877" d_score="0.00"/>
            <acceptor a_prob="0.040" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39582" g_stop="39569" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="767" r_length="14" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E714385" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43508" e_stop="43405"/>
          <exon e_start="41754" e_stop="41568"/>
          <exon e_start="41484" e_stop="41377"/>
          <exon e_start="40604" e_stop="40275"/>
          <exon e_start="39786" e_stop="39761"/>
          <exon e_start="39582" e_stop="39569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTCACATAAAGTTCAAATGGGAGAATCAGTCCATTTTTCGTTTGTTGTTATCAAATCAGAAGGTTCTTGGCATTATAGTGAAGAGGGTGTTGACCTTGTGGTAACTAAATTACTTTAATCTAGCTGTTTGTGTTTTTTCTGTTATGTAATTTGCAGTTTTTGTGATTTCTGATGATTGTGAATGGTAAAGATTTTGTCTTTATTGAGATGAAAGGCGATAGAGTAGTTGTCGGATTAATTGTATATCTTGTTGGTGCACTGTTAATAATGGAAGTGTGGTTTGGAATTCAAGCTTTGTTGTTTTGTTTGCGAATTTGTGGTGACTTTGATTTTAAGAATCATTAGACACTTGAATTATTTGAGCTTGTGAGGTATGTAATTTGCATTTTTTGTGATTTTTGCTGATCGGAAATTGTAAAGATTTCGTCTTTATTGAGATGAAAGGTGAAATAGTAGTATTGGATTTAGTTATATATATTGTTGCTTTGACTTTTGAACTAGTGTAAATAATGGAAGTGAGGTTTGGAATTCAAGCTTTGTTGTTTTGTTTGCATATTTGTGGTGACTTTGAATTGTCTGAGCTTGTGAGGTATGAAATTTGCATTTTTTGTTATTTTTGCTGATTGAAAATTGTGTAAGTTTCGTCTTTATTGAGATGAAGGGTGATATAGTAGTTATCGCATTGGTTATGTATCTTGTTGCTTTGATTCTACACTGAAATAATGAAGTGCAGTTTGGAATTCAAGCTTTGTTGTTTTGTTTGCATTTAGTTGACTTTGATTATAAGATTCACTAGACACAGCTGAATTGTTCGAGCTTAGTTGTTTTGTTAGCTGGTATATAGTTGTGTAATTTGCATTTTTTTAATATGTGCTGATTGAAAATTGTAAAGATTTCATCTTTATTGAGATGAAGGTGATATAGTAGTCATCGGATTAGTTATATATATCTAGTTGTTGTGATTCATGAACTACTGTTAATAATGAATGTGAGGTTTGGAATTCAAGCTTCCTTGTTTTGGTTGCAAATTTGTGGTGACTTTGACTTTGATTTAAAGATTTATTAAACACTTGAATTGTTCGAGTTTTTTTTTTTTTCAATTTTGTGTTGACTTTGATTTTAGAATTGTTGAGAGAAACTAACAATATTTTTCTTTATTTTTACACGTCTCTTTTGTGTTTTTTGCAACTTCAATCCTTTTTGTACACATAAAATTCCATAAATTGCAATTTGGTGGAGGAATATTTATCACTTTTATTCACTTTTTTTCTTGCGGGGTGGGGGAAATTGAGTCACAACTTTGAGAATTAGAATTATATGTGCTCAATTTCAAGAAAATTTGTATCTTGGAGCTGTAAATTGATGAGCTATTTTCTAAGACCACATAAGGATTACTTCAGTCAACTGTTCTAGTCACTCCAATACGGCTTTTTACCTTATGGCCCACGGTTCAAAGCTTGGTGGATAATGGGCCCACACATCTAACCTTCTTTGGGACTTTACTTAAATAACAAGGTTTTATCTACACGAGGGTTCGAATCCATGGTGGCGCTCCACCACACATCACGTGCTGCACTCTGACTACTAGATCAAAACCTGACATTTGGCATTAGTTTTGAACTTTGTCGCAATTGGTTCTTTATGCTTTTTTCATAGGGACCATATTTTACATTCACTTCTAAAGAAGAACTGTGTGTTTTTTCTGTCTAGTGGATTGTTCAATTGATGTTGCTATGTTGGTGGAAATTAGGTGAAGGGACCTTCCGGGGAGCAGCTTCATGATTTTCGTGACAAAATAAGTGAGAAGAACGAGTTTGTGGCCCATCATGAAGGAGTTTATCGTTTCTGTTTCACCAACAAGTCACCCTATCATGAAACCATAGACTTTGATCTACATGCTGCCCACTTCTCATACCACGACGAGCACGCAAAAGATGGTTAGCGTGTCACTTTGCTTCATCTTACTTTGTTATTAGGGGGCTCTTTACAAGATATCTTACTTTTTATTATGATACTGCAGAGCATTTCAAACCGTTGTTTGAGCACATTGGACAACTAGAGGAAGCTTTATACAACATTCAGTTTGAGCAGCATTGGCTCGAGGCCCAGACAGACCGACAAGCAATAGGTATTAGCTTTTGCATATTTCTTATATACGACTCTCCCACATTTCAGCAAATCAAATTTTTCCAACCACTTGCCATTTATCTAGTAGAAACAGTCCTTTTCTCCCTTTTGGCGTACACTTCAATGAGATAATTCTCCTTTCCCATTTTCCTCACTTTTTCACGTGATGTTCAACATAAATCCGGTGAAATGATCGTTATTGCTTCAGTTTCAGTTTGTTAAACCTAATTTTCAAATTTTTTTTCATTGTTCAATTTTACAAGATTGAGGATGCACATCTCTCCTCCATCTTGAATTATGTGAATGGTCATGAACTTTAGCACATGACCATTTAAGCCCAATATTCTTGGTAATGCTAAAGATGTGCAAGATTGTTTTATGCTATGTTGCTCGGACTCTTCAAAAATGTCGACATGTGCATTTCGGATACTCCAAAGTAGTTCATTTTGGAGAATCCTGACACAGCTGCGGCAACAATTTTGGAGAGTCCGAGCAACATAGGTTTTATGAACTTCATATGTTGTGTTTTTTGGATAATGATACGTGTATTATATATCCGTGACTTAGTTGTTTGAATATTCATATTGAGTATCACTTTTCTGTTCACTAGCAACAAGGGAATATCATTTATATGATCTGTTTCTCTTGGGTGTTGGCATCTCAATTTTATACTAATGGCAAAAGTCATGTTCACAAATCTTGCCAATTCATGATACTCTGCATGCTCCACAGCTTGTAGTTCTAATACGTTGATATCGTTTCTATTTATGCAGTGAATGAAATAATGAGCAAAAGAGCCGTCTACAAAGCTTTGCTCGAGTCTTCTGCTCTCATTGGCGTTAGCATTCTACAAGTCTACCTTCTAAAGCATCTTTTCGAACGAAAGCTGGGGCAATCCAGAGTTTAGGTTTTGACAGAACTGAAGATATTTATACTGCTGATCATCTTTGAACTTCAAATGCATTCCCTTTATGTACTGTAAAAACTAGAATGAACAGTTTTTGCCAGAGATTAAAGTTTTTATATTTCCTTTAGTTGAATGTTGAAAGCTCAATAATCTCAAATGAAAAATTACAATTCCTTTTGGAATTTTATTTTGTTTGGTAAATTCTGTTGAAACAACATTGATGTTGACAAACACAGTTTTGAAATAAACAAAAAACAACTACATTGGCAAACCACAACTGGCAAGTTAATAGAAACAAAAAGTTTTGACATTCAAAAATAAAATGGTTGTGCATTCATATTCAGACGTTTTAACTTGGCTTCACGAGCTCAAAACTCTAGTCTGCATCTTCAGTCATGTCTATTTCACGGAGCCTCTCTCCGAGACCATATCCATTTTTCACTTAACAAACACATAAATAGGAATATGAACTACATATAATGAGGCCTCATGAGCTCAATACACTAGGCGACGTCTATTTCAATACCATGTCCATATATTTCACCAAGCAAACACACAAATAGGAAGTTCTACGATGCATTTTCTACTTATTAGGCAAAAACAACATGATCTCATGAAATCAACAAGAAAAATTTACGGTTGAGAGGTGCTTTACAAACCACACTATGTGCTTGTCTGCTAAAGGTAAAATAAAAAGATACAACATATAGGTACAACATCAAACATTTTTGTCTTTCATATTTTGTTTCCCCAACAATATAACACAAGTTTACAAGACAAAAGGGGACTTTGAGCAATGCCTCAGTCTCCAGCACCAATCCAAAAGAAGTTGTGGGGTTTCATTATGAATATGCATCCTATATTCAGATTTTACACAACATTGTCAAGATTCTGCATGAGGG</genome_strand>
        <mrna_strand>GTTTTTCACATAAAGTTCAAATGGGAGAATCAGTCCATTTTTCGTTTGTTGTTATCAAATCAGAAGGTTCTTGGCATTATAGTGAAGAGGGTGTTGACCTTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGGGACCTTCCGGGGAGCAGCTTCATGATTTTCGTGACAAAATAAGTGAGAAGAACGAGTTTGTGGCCCATCATGAAGGAGTTTATCGTTTCTGTTTCACCAACAAGTCACCCTATCATGAAACCATAGACTTTGATCTACATGCTGCCCACTTCTCATACCACGACGAGCACGCAAAAGATG...................................................................................AGCATTTCAAACCGTTGTTTGAGCACATTGGACAACTAGAGGAAGCTTTATACAACATTCAGTTTGAGCAGCATTGGCTCGAGGCCCAGACAGACCGACAAGCAATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGAAATAATGAGCAAAAGAGCCGTCTACAAAGCTTTGCTCGAGTCTTCTGCTCTCATTGGCGTTAGCATTCTACAAGTCTACCTTCTAAAGCATCTTTTCGAACGAAAGCTGGGGCAATCCAGAGTTTAGGTTTTGACAGAACTGAAGATATTTATACTGCTGATCATCTTTGAACTTCAAATGCATTCCCTTTATGTACTGTAAAAACTAGAATGAACAGTTTTTGCCAGAGATTAAAGTTTTTATATTTCCTTTAGTTGAATGTTGAAAGCTCAATAATCTCAAATGAAAAATTACAATTCCTTTTGGAATTTTATTTTGTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAA-AAAAA-AAAAAAAAAAAAA..................................................................................................................................................................................ACTCCGGGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E722137" ref_strand="+" ref_description="SGN-E722137 [FC16BC12]">
      <seq>gaagtcaaacaaacaccacaaaaatcgtacaaatttcaaactcttgtccaaaatcccaattttttcgccaagaaaagatgagaattgggtcattgaaagtttggatcttggtgactatattggtggtggcatggagatgtggaggggtttatggaattagatttgtgattgatagagaagaatgtttttcacataaagttcaaatgggagaatcagtccatttttcgtttgttgttatcaaatcagaaggttcttggcattatagtgaagagggtgttgaccttgtggtgaagggaccttccggggagcagcttcatgattttcgtgacaaaataagtgagaagaacgagtttgtggcccatcatgaaggagtttatcgtttctgtttcaccaacaagtcaccctatcatgaaaccatagactttgatctacatgctgcccacttctcataccacgacgagcacgcaaaagatgagcatttcaaaccgttgtttgagcacattggacaactagaggaagctttatacaacattcagtttgagcagcattggctcgaggcccagacagaccgacaagcaatagtgaatgaaataatgagcaaaagagccgtctacaaagctttgctcgagtcttctgctctcattggcgttagcattctacaagtctaccttctaaagcatcttttcgaacgaaagctggggcaatccagagtttaggttttgacagaactgaagatatttatactgctgatcatctttgaacttcaaatgcattccctttatgtactgtaaaaactagaatgaacagtttttgccagagattaaagtttttatatttcctttagttgaatgttgaaagctcaataatctcaaatgaaaaatttacattccttttggaattttattttgtttggtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="44080" stop="39971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43781" g_stop="43705" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43704" i_stop="43615" i_length="90">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43614" g_stop="43405" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="287" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43404" i_stop="41755" i_length="1650">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41754" g_stop="41568" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="474" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41567" i_stop="41485" i_length="83">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41484" g_stop="41377" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="582" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41376" i_stop="40605" i_length="772">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40604" g_stop="40271" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="916" r_length="334" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E722137" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>916</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43781" e_stop="43705"/>
          <exon e_start="43614" e_stop="43405"/>
          <exon e_start="41754" e_stop="41568"/>
          <exon e_start="41484" e_stop="41377"/>
          <exon e_start="40604" e_stop="40271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTCAAACAAACACAACAAAAATCGTACAAATTTCAAACTCTTGTCCAAAATCCCAATTTTTTCGCCAAGAAAAGGTAAACCCTAGTTCTAAAAATCCAATTTTTTGATGTTTTTTTGTTCAATTTGATTTTTTTTGTGAAATTAAAACTGAGAATTAATTGCAGATGAGAATTGGGTCATTGAAAGTTTGGATCTTGGTGACTATATTGGTGGTGGCATGGAGATGTGGAGGGGTTTATGGAATTAGATTTGTGATTGATAGAGAAGAATGTTTTTCACATAAAGTTCAAATGGGAGAATCAGTCCATTTTTCGTTTGTTGTTATCAAATCAGAAGGTTCTTGGCATTATAGTGAAGAGGGTGTTGACCTTGTGGTAACTAAATTACTTTAATCTAGCTGTTTGTGTTTTTTCTGTTATGTAATTTGCAGTTTTTGTGATTTCTGATGATTGTGAATGGTAAAGATTTTGTCTTTATTGAGATGAAAGGCGATAGAGTAGTTGTCGGATTAATTGTATATCTTGTTGGTGCACTGTTAATAATGGAAGTGTGGTTTGGAATTCAAGCTTTGTTGTTTTGTTTGCGAATTTGTGGTGACTTTGATTTTAAGAATCATTAGACACTTGAATTATTTGAGCTTGTGAGGTATGTAATTTGCATTTTTTGTGATTTTTGCTGATCGGAAATTGTAAAGATTTCGTCTTTATTGAGATGAAAGGTGAAATAGTAGTATTGGATTTAGTTATATATATTGTTGCTTTGACTTTTGAACTAGTGTAAATAATGGAAGTGAGGTTTGGAATTCAAGCTTTGTTGTTTTGTTTGCATATTTGTGGTGACTTTGAATTGTCTGAGCTTGTGAGGTATGAAATTTGCATTTTTTGTTATTTTTGCTGATTGAAAATTGTGTAAGTTTCGTCTTTATTGAGATGAAGGGTGATATAGTAGTTATCGCATTGGTTATGTATCTTGTTGCTTTGATTCTACACTGAAATAATGAAGTGCAGTTTGGAATTCAAGCTTTGTTGTTTTGTTTGCATTTAGTTGACTTTGATTATAAGATTCACTAGACACAGCTGAATTGTTCGAGCTTAGTTGTTTTGTTAGCTGGTATATAGTTGTGTAATTTGCATTTTTTTAATATGTGCTGATTGAAAATTGTAAAGATTTCATCTTTATTGAGATGAAGGTGATATAGTAGTCATCGGATTAGTTATATATATCTAGTTGTTGTGATTCATGAACTACTGTTAATAATGAATGTGAGGTTTGGAATTCAAGCTTCCTTGTTTTGGTTGCAAATTTGTGGTGACTTTGACTTTGATTTAAAGATTTATTAAACACTTGAATTGTTCGAGTTTTTTTTTTTTTCAATTTTGTGTTGACTTTGATTTTAGAATTGTTGAGAGAAACTAACAATATTTTTCTTTATTTTTACACGTCTCTTTTGTGTTTTTTGCAACTTCAATCCTTTTTGTACACATAAAATTCCATAAATTGCAATTTGGTGGAGGAATATTTATCACTTTTATTCACTTTTTTTCTTGCGGGGTGGGGGAAATTGAGTCACAACTTTGAGAATTAGAATTATATGTGCTCAATTTCAAGAAAATTTGTATCTTGGAGCTGTAAATTGATGAGCTATTTTCTAAGACCACATAAGGATTACTTCAGTCAACTGTTCTAGTCACTCCAATACGGCTTTTTACCTTATGGCCCACGGTTCAAAGCTTGGTGGATAATGGGCCCACACATCTAACCTTCTTTGGGACTTTACTTAAATAACAAGGTTTTATCTACACGAGGGTTCGAATCCATGGTGGCGCTCCACCACACATCACGTGCTGCACTCTGACTACTAGATCAAAACCTGACATTTGGCATTAGTTTTGAACTTTGTCGCAATTGGTTCTTTATGCTTTTTTCATAGGGACCATATTTTACATTCACTTCTAAAGAAGAACTGTGTGTTTTTTCTGTCTAGTGGATTGTTCAATTGATGTTGCTATGTTGGTGGAAATTAGGTGAAGGGACCTTCCGGGGAGCAGCTTCATGATTTTCGTGACAAAATAAGTGAGAAGAACGAGTTTGTGGCCCATCATGAAGGAGTTTATCGTTTCTGTTTCACCAACAAGTCACCCTATCATGAAACCATAGACTTTGATCTACATGCTGCCCACTTCTCATACCACGACGAGCACGCAAAAGATGGTTAGCGTGTCACTTTGCTTCATCTTACTTTGTTATTAGGGGGCTCTTTACAAGATATCTTACTTTTTATTATGATACTGCAGAGCATTTCAAACCGTTGTTTGAGCACATTGGACAACTAGAGGAAGCTTTATACAACATTCAGTTTGAGCAGCATTGGCTCGAGGCCCAGACAGACCGACAAGCAATAGGTATTAGCTTTTGCATATTTCTTATATACGACTCTCCCACATTTCAGCAAATCAAATTTTTCCAACCACTTGCCATTTATCTAGTAGAAACAGTCCTTTTCTCCCTTTTGGCGTACACTTCAATGAGATAATTCTCCTTTCCCATTTTCCTCACTTTTTCACGTGATGTTCAACATAAATCCGGTGAAATGATCGTTATTGCTTCAGTTTCAGTTTGTTAAACCTAATTTTCAAATTTTTTTTCATTGTTCAATTTTACAAGATTGAGGATGCACATCTCTCCTCCATCTTGAATTATGTGAATGGTCATGAACTTTAGCACATGACCATTTAAGCCCAATATTCTTGGTAATGCTAAAGATGTGCAAGATTGTTTTATGCTATGTTGCTCGGACTCTTCAAAAATGTCGACATGTGCATTTCGGATACTCCAAAGTAGTTCATTTTGGAGAATCCTGACACAGCTGCGGCAACAATTTTGGAGAGTCCGAGCAACATAGGTTTTATGAACTTCATATGTTGTGTTTTTTGGATAATGATACGTGTATTATATATCCGTGACTTAGTTGTTTGAATATTCATATTGAGTATCACTTTTCTGTTCACTAGCAACAAGGGAATATCATTTATATGATCTGTTTCTCTTGGGTGTTGGCATCTCAATTTTATACTAATGGCAAAAGTCATGTTCACAAATCTTGCCAATTCATGATACTCTGCATGCTCCACAGCTTGTAGTTCTAATACGTTGATATCGTTTCTATTTATGCAGTGAATGAAATAATGAGCAAAAGAGCCGTCTACAAAGCTTTGCTCGAGTCTTCTGCTCTCATTGGCGTTAGCATTCTACAAGTCTACCTTCTAAAGCATCTTTTCGAACGAAAGCTGGGGCAATCCAGAGTTTAGGTTTTGACAGAACTGAAGATATTTATACTGCTGATCATCTTTGAACTTCAAATGCATTCCCTTTATGTACTGTAAAAACTAGAATGAACAGTTTTTGCCAGAGATTAAAGTTTTTATATTTCCTTTAGTTGAATGTTGAAAGCTCAATAATCTCAAATGAAAAATTACAATTCCTTTTGGAATTTTATTTTGTTTGGTAA</genome_strand>
        <mrna_strand>GAAGTCAAACAAACACCACAAAAATCGTACAAATTTCAAACTCTTGTCCAAAATCCCAATTTTTTCGCCAAGAAAAG..........................................................................................ATGAGAATTGGGTCATTGAAAGTTTGGATCTTGGTGACTATATTGGTGGTGGCATGGAGATGTGGAGGGGTTTATGGAATTAGATTTGTGATTGATAGAGAAGAATGTTTTTCACATAAAGTTCAAATGGGAGAATCAGTCCATTTTTCGTTTGTTGTTATCAAATCAGAAGGTTCTTGGCATTATAGTGAAGAGGGTGTTGACCTTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGGGACCTTCCGGGGAGCAGCTTCATGATTTTCGTGACAAAATAAGTGAGAAGAACGAGTTTGTGGCCCATCATGAAGGAGTTTATCGTTTCTGTTTCACCAACAAGTCACCCTATCATGAAACCATAGACTTTGATCTACATGCTGCCCACTTCTCATACCACGACGAGCACGCAAAAGATG...................................................................................AGCATTTCAAACCGTTGTTTGAGCACATTGGACAACTAGAGGAAGCTTTATACAACATTCAGTTTGAGCAGCATTGGCTCGAGGCCCAGACAGACCGACAAGCAATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGAAATAATGAGCAAAAGAGCCGTCTACAAAGCTTTGCTCGAGTCTTCTGCTCTCATTGGCGTTAGCATTCTACAAGTCTACCTTCTAAAGCATCTTTTCGAACGAAAGCTGGGGCAATCCAGAGTTTAGGTTTTGACAGAACTGAAGATATTTATACTGCTGATCATCTTTGAACTTCAAATGCATTCCCTTTATGTACTGTAAAAACTAGAATGAACAGTTTTTGCCAGAGATTAAAGTTTTTATATTTCCTTTAGTTGAATGTTGAAAGCTCAATAATCTCAAATGAAAAATTTACATTCCTTTTGGAATTTTATTTTGTTTGGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E543244" ref_strand="-" ref_description="SGN-E543244 [TUS-64-P10]">
      <seq>tcagtttgagcagcattggctcgaggcccagacagaccgacaagcaatagtgaatgaaataatgagcaaaagagccgtctacaaagctttgctcgagtcttctgctctcattggcgttagcattctacaagtctaccttctaaagcatcttttcgaacgaaagctggggcaatccagagtttaggttttgacagaactgaagatatttatactgctgatcatctttgaacttcaaatgcattccctttatgtactgtaaaaactagaatgaacagtttttgccagagattaaagtttttatatttcctttagttgaatgttgaaagctcaataatctcaaatgaaaaattacaattccttttggaattttattttgtttggtaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="41726" stop="39970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41426" g_stop="41377" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41376" i_stop="40605" i_length="772">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40604" g_stop="40271" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="384" r_length="334" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="385" polyA_stop="399"/>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E543244" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543244" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41426" e_stop="41377"/>
          <exon e_start="40604" e_stop="40271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTTGAGCAGCATTGGCTCGAGGCCCAGACAGACCGACAAGCAATAGGTATTAGCTTTTGCATATTTCTTATATACGACTCTCCCACATTTCAGCAAATCAAATTTTTCCAACCACTTGCCATTTATCTAGTAGAAACAGTCCTTTTCTCCCTTTTGGCGTACACTTCAATGAGATAATTCTCCTTTCCCATTTTCCTCACTTTTTCACGTGATGTTCAACATAAATCCGGTGAAATGATCGTTATTGCTTCAGTTTCAGTTTGTTAAACCTAATTTTCAAATTTTTTTTCATTGTTCAATTTTACAAGATTGAGGATGCACATCTCTCCTCCATCTTGAATTATGTGAATGGTCATGAACTTTAGCACATGACCATTTAAGCCCAATATTCTTGGTAATGCTAAAGATGTGCAAGATTGTTTTATGCTATGTTGCTCGGACTCTTCAAAAATGTCGACATGTGCATTTCGGATACTCCAAAGTAGTTCATTTTGGAGAATCCTGACACAGCTGCGGCAACAATTTTGGAGAGTCCGAGCAACATAGGTTTTATGAACTTCATATGTTGTGTTTTTTGGATAATGATACGTGTATTATATATCCGTGACTTAGTTGTTTGAATATTCATATTGAGTATCACTTTTCTGTTCACTAGCAACAAGGGAATATCATTTATATGATCTGTTTCTCTTGGGTGTTGGCATCTCAATTTTATACTAATGGCAAAAGTCATGTTCACAAATCTTGCCAATTCATGATACTCTGCATGCTCCACAGCTTGTAGTTCTAATACGTTGATATCGTTTCTATTTATGCAGTGAATGAAATAATGAGCAAAAGAGCCGTCTACAAAGCTTTGCTCGAGTCTTCTGCTCTCATTGGCGTTAGCATTCTACAAGTCTACCTTCTAAAGCATCTTTTCGAACGAAAGCTGGGGCAATCCAGAGTTTAGGTTTTGACAGAACTGAAGATATTTATACTGCTGATCATCTTTGAACTTCAAATGCATTCCCTTTATGTACTGTAAAAACTAGAATGAACAGTTTTTGCCAGAGATTAAAGTTTTTATATTTCCTTTAGTTGAATGTTGAAAGCTCAATAATCTCAAATGAAAAATTACAATTCCTTTTGGAATTTTATTTTGTTTGGTAA</genome_strand>
        <mrna_strand>TCAGTTTGAGCAGCATTGGCTCGAGGCCCAGACAGACCGACAAGCAATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGAAATAATGAGCAAAAGAGCCGTCTACAAAGCTTTGCTCGAGTCTTCTGCTCTCATTGGCGTTAGCATTCTACAAGTCTACCTTCTAAAGCATCTTTTCGAACGAAAGCTGGGGCAATCCAGAGTTTAGGTTTTGACAGAACTGAAGATATTTATACTGCTGATCATCTTTGAACTTCAAATGCATTCCCTTTATGTACTGTAAAAACTAGAATGAACAGTTTTTGCCAGAGATTAAAGTTTTTATATTTCCTTTAGTTGAATGTTGAAAGCTCAATAATCTCAAATGAAAAATTACAATTCCTTTTGGAATTTTATTTTGTTTGGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E706814" ref_strand="+" ref_description="SGN-E706814 [FA31AA09]">
      <seq>tgaaaccctagactttgatctaccatgctgcccacttctcataccacgacgagcacgcccaagatgagcatttcaaaccgttgtttgagcacattggacaactagaggaagctttatacaacattcagtttgagcagcattggctcgaggcccagacagaccgacaagcaatagtgaatgaaataatgagcaaaagagccgtctacaaagctttgctcgagtcttctgctctcattggcgttagcattctacaagtctaccttctaaagcatcttttcgaacgaaagctggggcaatccagagtttaggttttgacagaactgaagatatttatactgctgatcatctttgaacttcaaatgcattccctttatgcactgtaaaaactagaatgaacagtttttgcccgagattaaagttcttatatttccctttacttgaatgttgaaagctcaataatctcaaatgaaaaattacaattccttttggaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="41932" stop="39986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41632" g_stop="41568" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41567" i_stop="41485" i_length="83">
            <donor d_prob="0.912" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41484" g_stop="41377" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="174" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41376" i_stop="40605" i_length="772">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40604" g_stop="40286" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="494" r_length="320" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E706814" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41632" e_stop="41568"/>
          <exon e_start="41484" e_stop="41377"/>
          <exon e_start="40604" e_stop="40286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAACCATAGACTTTGATCTA-CATGCTGCCCACTTCTCATACCACGACGAGCACGCAAAAGATGGTTAGCGTGTCACTTTGCTTCATCTTACTTTGTTATTAGGGGGCTCTTTACAAGATATCTTACTTTTTATTATGATACTGCAGAGCATTTCAAACCGTTGTTTGAGCACATTGGACAACTAGAGGAAGCTTTATACAACATTCAGTTTGAGCAGCATTGGCTCGAGGCCCAGACAGACCGACAAGCAATAGGTATTAGCTTTTGCATATTTCTTATATACGACTCTCCCACATTTCAGCAAATCAAATTTTTCCAACCACTTGCCATTTATCTAGTAGAAACAGTCCTTTTCTCCCTTTTGGCGTACACTTCAATGAGATAATTCTCCTTTCCCATTTTCCTCACTTTTTCACGTGATGTTCAACATAAATCCGGTGAAATGATCGTTATTGCTTCAGTTTCAGTTTGTTAAACCTAATTTTCAAATTTTTTTTCATTGTTCAATTTTACAAGATTGAGGATGCACATCTCTCCTCCATCTTGAATTATGTGAATGGTCATGAACTTTAGCACATGACCATTTAAGCCCAATATTCTTGGTAATGCTAAAGATGTGCAAGATTGTTTTATGCTATGTTGCTCGGACTCTTCAAAAATGTCGACATGTGCATTTCGGATACTCCAAAGTAGTTCATTTTGGAGAATCCTGACACAGCTGCGGCAACAATTTTGGAGAGTCCGAGCAACATAGGTTTTATGAACTTCATATGTTGTGTTTTTTGGATAATGATACGTGTATTATATATCCGTGACTTAGTTGTTTGAATATTCATATTGAGTATCACTTTTCTGTTCACTAGCAACAAGGGAATATCATTTATATGATCTGTTTCTCTTGGGTGTTGGCATCTCAATTTTATACTAATGGCAAAAGTCATGTTCACAAATCTTGCCAATTCATGATACTCTGCATGCTCCACAGCTTGTAGTTCTAATACGTTGATATCGTTTCTATTTATGCAGTGAATGAAATAATGAGCAAAAGAGCCGTCTACAAAGCTTTGCTCGAGTCTTCTGCTCTCATTGGCGTTAGCATTCTACAAGTCTACCTTCTAAAGCATCTTTTCGAACGAAAGCTGGGGCAATCCAGAGTTTAGGTTTTGACAGAACTGAAGATATTTATACTGCTGATCATCTTTGAACTTCAAATGCATTCCCTTTATGTACTGTAAAAACTAGAATGAACAGTTTTTGCCAGAGATTAAAGTTTTTATATTT-CCTTTAGTTGAATGTTGAAAGCTCAATAATCTCAAATGAAAAATTACAATTCCTTTTGGAATTT</genome_strand>
        <mrna_strand>TGAAACCCTAGACTTTGATCTACCATGCTGCCCACTTCTCATACCACGACGAGCACGCCCAAGATG...................................................................................AGCATTTCAAACCGTTGTTTGAGCACATTGGACAACTAGAGGAAGCTTTATACAACATTCAGTTTGAGCAGCATTGGCTCGAGGCCCAGACAGACCGACAAGCAATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGAAATAATGAGCAAAAGAGCCGTCTACAAAGCTTTGCTCGAGTCTTCTGCTCTCATTGGCGTTAGCATTCTACAAGTCTACCTTCTAAAGCATCTTTTCGAACGAAAGCTGGGGCAATCCAGAGTTTAGGTTTTGACAGAACTGAAGATATTTATACTGCTGATCATCTTTGAACTTCAAATGCATTCCCTTTATGCACTGTAAAAACTAGAATGAACAGTTTTTGCCCGAGATTAAAGTTCTTATATTTCCCTTTACTTGAATGTTGAAAGCTCAATAATCTCAAATGAAAAATTACAATTCCTTTTGGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E713737" ref_strand="+" ref_description="SGN-E713737 [FB09CA07]">
      <seq>cgtattaaatttcaaactcttgtccaaaatcccaattttttcgccaagaaaagatgagaattgggtcattgaaagtttggatcttggtgactatattggtggtggcatggagatgtggaggggtttatggaattagatttgtgattgatagagaagaatgtttttcacataaagttcaaatgggagaatcagtccatttttcgtttgttgttatcaaatcagaaggttcttggcattatagtgaagagggtgttgaccttgtggtgaagggaccttccggggagcagcttcatgattttcgtgacaaaataagtgagaagaacgagtttgtggcccatcatgaaggagtttatcgtttctgtttcaccaacaagtcaccctatcatgaaaccatagactttgatctacatgctgcccacttctcataccacgacgagcacgcaaaagatgagcatttcaaaccgttgtttgagcacattggacaactagaggaagctttatacaacattcagtttgagcagcattggctcgaggcccagacagaccgacaagcaatagtgaatgaaataatgagcaaaagagccgtctacaaagctttgctcgagtcttctgctctcattggcgttagcattctacaagtctaccttctaaagcatcttttcgaacgaaagctggggcaatccagagtttaggttttgacagaactgaagatatttatactgctgatcatctttgaacttcaaatgcattccctttatgtactgtaaaaactagaatgaacagtttttgccagagattaaagttttatatttcctttagttgaatgttgaaagctcaataatctcaaatgaaaaattaccattccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="44051" stop="39994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43756" g_stop="43705" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43704" i_stop="43615" i_length="90">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43614" g_stop="43405" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="263" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43404" i_stop="41755" i_length="1650">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41754" g_stop="41568" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="450" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41567" i_stop="41485" i_length="83">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41484" g_stop="41377" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="558" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41376" i_stop="40605" i_length="772">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40604" g_stop="40294" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="868" r_length="310" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E713737" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43756" e_stop="43705"/>
          <exon e_start="43614" e_stop="43405"/>
          <exon e_start="41754" e_stop="41568"/>
          <exon e_start="41484" e_stop="41377"/>
          <exon e_start="40604" e_stop="40294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTA-CAAATTTCAAACTCTTGTCCAAAATCCCAATTTTTTCGCCAAGAAAAGGTAAACCCTAGTTCTAAAAATCCAATTTTTTGATGTTTTTTTGTTCAATTTGATTTTTTTTGTGAAATTAAAACTGAGAATTAATTGCAGATGAGAATTGGGTCATTGAAAGTTTGGATCTTGGTGACTATATTGGTGGTGGCATGGAGATGTGGAGGGGTTTATGGAATTAGATTTGTGATTGATAGAGAAGAATGTTTTTCACATAAAGTTCAAATGGGAGAATCAGTCCATTTTTCGTTTGTTGTTATCAAATCAGAAGGTTCTTGGCATTATAGTGAAGAGGGTGTTGACCTTGTGGTAACTAAATTACTTTAATCTAGCTGTTTGTGTTTTTTCTGTTATGTAATTTGCAGTTTTTGTGATTTCTGATGATTGTGAATGGTAAAGATTTTGTCTTTATTGAGATGAAAGGCGATAGAGTAGTTGTCGGATTAATTGTATATCTTGTTGGTGCACTGTTAATAATGGAAGTGTGGTTTGGAATTCAAGCTTTGTTGTTTTGTTTGCGAATTTGTGGTGACTTTGATTTTAAGAATCATTAGACACTTGAATTATTTGAGCTTGTGAGGTATGTAATTTGCATTTTTTGTGATTTTTGCTGATCGGAAATTGTAAAGATTTCGTCTTTATTGAGATGAAAGGTGAAATAGTAGTATTGGATTTAGTTATATATATTGTTGCTTTGACTTTTGAACTAGTGTAAATAATGGAAGTGAGGTTTGGAATTCAAGCTTTGTTGTTTTGTTTGCATATTTGTGGTGACTTTGAATTGTCTGAGCTTGTGAGGTATGAAATTTGCATTTTTTGTTATTTTTGCTGATTGAAAATTGTGTAAGTTTCGTCTTTATTGAGATGAAGGGTGATATAGTAGTTATCGCATTGGTTATGTATCTTGTTGCTTTGATTCTACACTGAAATAATGAAGTGCAGTTTGGAATTCAAGCTTTGTTGTTTTGTTTGCATTTAGTTGACTTTGATTATAAGATTCACTAGACACAGCTGAATTGTTCGAGCTTAGTTGTTTTGTTAGCTGGTATATAGTTGTGTAATTTGCATTTTTTTAATATGTGCTGATTGAAAATTGTAAAGATTTCATCTTTATTGAGATGAAGGTGATATAGTAGTCATCGGATTAGTTATATATATCTAGTTGTTGTGATTCATGAACTACTGTTAATAATGAATGTGAGGTTTGGAATTCAAGCTTCCTTGTTTTGGTTGCAAATTTGTGGTGACTTTGACTTTGATTTAAAGATTTATTAAACACTTGAATTGTTCGAGTTTTTTTTTTTTTCAATTTTGTGTTGACTTTGATTTTAGAATTGTTGAGAGAAACTAACAATATTTTTCTTTATTTTTACACGTCTCTTTTGTGTTTTTTGCAACTTCAATCCTTTTTGTACACATAAAATTCCATAAATTGCAATTTGGTGGAGGAATATTTATCACTTTTATTCACTTTTTTTCTTGCGGGGTGGGGGAAATTGAGTCACAACTTTGAGAATTAGAATTATATGTGCTCAATTTCAAGAAAATTTGTATCTTGGAGCTGTAAATTGATGAGCTATTTTCTAAGACCACATAAGGATTACTTCAGTCAACTGTTCTAGTCACTCCAATACGGCTTTTTACCTTATGGCCCACGGTTCAAAGCTTGGTGGATAATGGGCCCACACATCTAACCTTCTTTGGGACTTTACTTAAATAACAAGGTTTTATCTACACGAGGGTTCGAATCCATGGTGGCGCTCCACCACACATCACGTGCTGCACTCTGACTACTAGATCAAAACCTGACATTTGGCATTAGTTTTGAACTTTGTCGCAATTGGTTCTTTATGCTTTTTTCATAGGGACCATATTTTACATTCACTTCTAAAGAAGAACTGTGTGTTTTTTCTGTCTAGTGGATTGTTCAATTGATGTTGCTATGTTGGTGGAAATTAGGTGAAGGGACCTTCCGGGGAGCAGCTTCATGATTTTCGTGACAAAATAAGTGAGAAGAACGAGTTTGTGGCCCATCATGAAGGAGTTTATCGTTTCTGTTTCACCAACAAGTCACCCTATCATGAAACCATAGACTTTGATCTACATGCTGCCCACTTCTCATACCACGACGAGCACGCAAAAGATGGTTAGCGTGTCACTTTGCTTCATCTTACTTTGTTATTAGGGGGCTCTTTACAAGATATCTTACTTTTTATTATGATACTGCAGAGCATTTCAAACCGTTGTTTGAGCACATTGGACAACTAGAGGAAGCTTTATACAACATTCAGTTTGAGCAGCATTGGCTCGAGGCCCAGACAGACCGACAAGCAATAGGTATTAGCTTTTGCATATTTCTTATATACGACTCTCCCACATTTCAGCAAATCAAATTTTTCCAACCACTTGCCATTTATCTAGTAGAAACAGTCCTTTTCTCCCTTTTGGCGTACACTTCAATGAGATAATTCTCCTTTCCCATTTTCCTCACTTTTTCACGTGATGTTCAACATAAATCCGGTGAAATGATCGTTATTGCTTCAGTTTCAGTTTGTTAAACCTAATTTTCAAATTTTTTTTCATTGTTCAATTTTACAAGATTGAGGATGCACATCTCTCCTCCATCTTGAATTATGTGAATGGTCATGAACTTTAGCACATGACCATTTAAGCCCAATATTCTTGGTAATGCTAAAGATGTGCAAGATTGTTTTATGCTATGTTGCTCGGACTCTTCAAAAATGTCGACATGTGCATTTCGGATACTCCAAAGTAGTTCATTTTGGAGAATCCTGACACAGCTGCGGCAACAATTTTGGAGAGTCCGAGCAACATAGGTTTTATGAACTTCATATGTTGTGTTTTTTGGATAATGATACGTGTATTATATATCCGTGACTTAGTTGTTTGAATATTCATATTGAGTATCACTTTTCTGTTCACTAGCAACAAGGGAATATCATTTATATGATCTGTTTCTCTTGGGTGTTGGCATCTCAATTTTATACTAATGGCAAAAGTCATGTTCACAAATCTTGCCAATTCATGATACTCTGCATGCTCCACAGCTTGTAGTTCTAATACGTTGATATCGTTTCTATTTATGCAGTGAATGAAATAATGAGCAAAAGAGCCGTCTACAAAGCTTTGCTCGAGTCTTCTGCTCTCATTGGCGTTAGCATTCTACAAGTCTACCTTCTAAAGCATCTTTTCGAACGAAAGCTGGGGCAATCCAGAGTTTAGGTTTTGACAGAACTGAAGATATTTATACTGCTGATCATCTTTGAACTTCAAATGCATTCCCTTTATGTACTGTAAAAACTAGAATGAACAGTTTTTGCCAGAGATTAAAGTTTTTATATTTCCTTTAGTTGAATGTTGAAAGCTCAATAATCTCAAATGAAAAATTACAATTCCTTT</genome_strand>
        <mrna_strand>CGTATTAAATTTCAAACTCTTGTCCAAAATCCCAATTTTTTCGCCAAGAAAAG..........................................................................................ATGAGAATTGGGTCATTGAAAGTTTGGATCTTGGTGACTATATTGGTGGTGGCATGGAGATGTGGAGGGGTTTATGGAATTAGATTTGTGATTGATAGAGAAGAATGTTTTTCACATAAAGTTCAAATGGGAGAATCAGTCCATTTTTCGTTTGTTGTTATCAAATCAGAAGGTTCTTGGCATTATAGTGAAGAGGGTGTTGACCTTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGGGACCTTCCGGGGAGCAGCTTCATGATTTTCGTGACAAAATAAGTGAGAAGAACGAGTTTGTGGCCCATCATGAAGGAGTTTATCGTTTCTGTTTCACCAACAAGTCACCCTATCATGAAACCATAGACTTTGATCTACATGCTGCCCACTTCTCATACCACGACGAGCACGCAAAAGATG...................................................................................AGCATTTCAAACCGTTGTTTGAGCACATTGGACAACTAGAGGAAGCTTTATACAACATTCAGTTTGAGCAGCATTGGCTCGAGGCCCAGACAGACCGACAAGCAATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGAAATAATGAGCAAAAGAGCCGTCTACAAAGCTTTGCTCGAGTCTTCTGCTCTCATTGGCGTTAGCATTCTACAAGTCTACCTTCTAAAGCATCTTTTCGAACGAAAGCTGGGGCAATCCAGAGTTTAGGTTTTGACAGAACTGAAGATATTTATACTGCTGATCATCTTTGAACTTCAAATGCATTCCCTTTATGTACTGTAAAAACTAGAATGAACAGTTTTTGCCAGAGATTAAAG-TTTTATATTTCCTTTAGTTGAATGTTGAAAGCTCAATAATCTCAAATGAAAAATTACCATTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E267871" ref_strand="+" ref_description="SGN-E267871 [cLEI-12-O18]">
      <seq>gagcagcttcatgattttcgtgacaaaataagtgagaagaacgagtttgtggcccatcatgaaggagtttatcgtttctgtttcaccaacaagtcaccctatcatgaaaccatagactttgatctacatgctgcccacttctcataccacgacgagcacgcaaaagatgagcatttcaaaccgttgtttgagcacattggacaactagaggaagctttatacaacattcagtttgagcagcattggctcgaggcccagacagaccgacaagcaatagtgaatgaaataatgagcaaaagagccgtctacaaagctttgctcgagtcttctgctctcattggcgttagcattctacaagtctaccttctaaagcatcttttcgaacgaaagctggggcaatccagagtttaggttttgacagaactgaagatatttatactgctgatcatctttgaacttcaaatgcattccctttatgtactgtaaaaactagaatgaacagtttttgccagagattaaagtttttatatttcctttagttgaatgttgaaagctcaataatctcaaatgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="42036" stop="40008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41736" g_stop="41568" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41567" i_stop="41485" i_length="83">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41484" g_stop="41377" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="277" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41376" i_stop="40605" i_length="772">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40604" g_stop="40308" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="574" r_length="297" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E267871" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41736" e_stop="41568"/>
          <exon e_start="41484" e_stop="41377"/>
          <exon e_start="40604" e_stop="40308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAGCTTCATGATTTTCGTGACAAAATAAGTGAGAAGAACGAGTTTGTGGCCCATCATGAAGGAGTTTATCGTTTCTGTTTCACCAACAAGTCACCCTATCATGAAACCATAGACTTTGATCTACATGCTGCCCACTTCTCATACCACGACGAGCACGCAAAAGATGGTTAGCGTGTCACTTTGCTTCATCTTACTTTGTTATTAGGGGGCTCTTTACAAGATATCTTACTTTTTATTATGATACTGCAGAGCATTTCAAACCGTTGTTTGAGCACATTGGACAACTAGAGGAAGCTTTATACAACATTCAGTTTGAGCAGCATTGGCTCGAGGCCCAGACAGACCGACAAGCAATAGGTATTAGCTTTTGCATATTTCTTATATACGACTCTCCCACATTTCAGCAAATCAAATTTTTCCAACCACTTGCCATTTATCTAGTAGAAACAGTCCTTTTCTCCCTTTTGGCGTACACTTCAATGAGATAATTCTCCTTTCCCATTTTCCTCACTTTTTCACGTGATGTTCAACATAAATCCGGTGAAATGATCGTTATTGCTTCAGTTTCAGTTTGTTAAACCTAATTTTCAAATTTTTTTTCATTGTTCAATTTTACAAGATTGAGGATGCACATCTCTCCTCCATCTTGAATTATGTGAATGGTCATGAACTTTAGCACATGACCATTTAAGCCCAATATTCTTGGTAATGCTAAAGATGTGCAAGATTGTTTTATGCTATGTTGCTCGGACTCTTCAAAAATGTCGACATGTGCATTTCGGATACTCCAAAGTAGTTCATTTTGGAGAATCCTGACACAGCTGCGGCAACAATTTTGGAGAGTCCGAGCAACATAGGTTTTATGAACTTCATATGTTGTGTTTTTTGGATAATGATACGTGTATTATATATCCGTGACTTAGTTGTTTGAATATTCATATTGAGTATCACTTTTCTGTTCACTAGCAACAAGGGAATATCATTTATATGATCTGTTTCTCTTGGGTGTTGGCATCTCAATTTTATACTAATGGCAAAAGTCATGTTCACAAATCTTGCCAATTCATGATACTCTGCATGCTCCACAGCTTGTAGTTCTAATACGTTGATATCGTTTCTATTTATGCAGTGAATGAAATAATGAGCAAAAGAGCCGTCTACAAAGCTTTGCTCGAGTCTTCTGCTCTCATTGGCGTTAGCATTCTACAAGTCTACCTTCTAAAGCATCTTTTCGAACGAAAGCTGGGGCAATCCAGAGTTTAGGTTTTGACAGAACTGAAGATATTTATACTGCTGATCATCTTTGAACTTCAAATGCATTCCCTTTATGTACTGTAAAAACTAGAATGAACAGTTTTTGCCAGAGATTAAAGTTTTTATATTTCCTTTAGTTGAATGTTGAAAGCTCAATAATCTCAAATGAAAA</genome_strand>
        <mrna_strand>GAGCAGCTTCATGATTTTCGTGACAAAATAAGTGAGAAGAACGAGTTTGTGGCCCATCATGAAGGAGTTTATCGTTTCTGTTTCACCAACAAGTCACCCTATCATGAAACCATAGACTTTGATCTACATGCTGCCCACTTCTCATACCACGACGAGCACGCAAAAGATG...................................................................................AGCATTTCAAACCGTTGTTTGAGCACATTGGACAACTAGAGGAAGCTTTATACAACATTCAGTTTGAGCAGCATTGGCTCGAGGCCCAGACAGACCGACAAGCAATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGAAATAATGAGCAAAAGAGCCGTCTACAAAGCTTTGCTCGAGTCTTCTGCTCTCATTGGCGTTAGCATTCTACAAGTCTACCTTCTAAAGCATCTTTTCGAACGAAAGCTGGGGCAATCCAGAGTTTAGGTTTTGACAGAACTGAAGATATTTATACTGCTGATCATCTTTGAACTTCAAATGCATTCCCTTTATGTACTGTAAAAACTAGAATGAACAGTTTTTGCCAGAGATTAAAGTTTTTATATTTCCTTTAGTTGAATGTTGAAAGCTCAATAATCTCAAATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E290924" ref_strand="+" ref_description="SGN-E290924 [cLET-8-K13]">
      <seq>aaaaatcgtacaaatttcaaactcttgtccaaaatcccaattttttcgccaagaaaagatgagaattgggtcattgaaagtttggatcttggtgactatattggtggtggcatggagatgtggaggggtttatggaattagatttgtgattgatagagaagaatgtttttcacataaagttcaaatgggagaatcagtccatttttcgtttgttgttatcaaatcagaaggttcttggcattatagtgaagagggtgttgaccttgtggtgaagggaccttccggggagcagcttcatgattttcgtgacaaaataagtgagaagaacgagtttgtggcccatcatgaaggagtttatcgtttctgtttcaccaacaagtcaccctatcatgaaaccatagactttgatctacatgctgcccacttcttataccacgacgagcacgcaaaagatgagcatttcaaaccgttgtttgagcacattggacaactagaggaagctttatacaacattcagtttgagcagcattggctcgaggcccagacagaccgacaggccattagtgaatgaaataatgagcaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="44062" stop="40283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43762" g_stop="43705" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43704" i_stop="43615" i_length="90">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43614" g_stop="43405" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="268" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43404" i_stop="41755" i_length="1650">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41754" g_stop="41568" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="455" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41567" i_stop="41485" i_length="83">
            <donor d_prob="0.912" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41484" g_stop="41377" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="564" r_length="109" r_score="0.963"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41376" i_stop="40605" i_length="772">
            <donor d_prob="0.981" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40604" g_stop="40583" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="586" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E290924" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43762" e_stop="43705"/>
          <exon e_start="43614" e_stop="43405"/>
          <exon e_start="41754" e_stop="41568"/>
          <exon e_start="41484" e_stop="41377"/>
          <exon e_start="40604" e_stop="40583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCGTACAAATTTCAAACTCTTGTCCAAAATCCCAATTTTTTCGCCAAGAAAAGGTAAACCCTAGTTCTAAAAATCCAATTTTTTGATGTTTTTTTGTTCAATTTGATTTTTTTTGTGAAATTAAAACTGAGAATTAATTGCAGATGAGAATTGGGTCATTGAAAGTTTGGATCTTGGTGACTATATTGGTGGTGGCATGGAGATGTGGAGGGGTTTATGGAATTAGATTTGTGATTGATAGAGAAGAATGTTTTTCACATAAAGTTCAAATGGGAGAATCAGTCCATTTTTCGTTTGTTGTTATCAAATCAGAAGGTTCTTGGCATTATAGTGAAGAGGGTGTTGACCTTGTGGTAACTAAATTACTTTAATCTAGCTGTTTGTGTTTTTTCTGTTATGTAATTTGCAGTTTTTGTGATTTCTGATGATTGTGAATGGTAAAGATTTTGTCTTTATTGAGATGAAAGGCGATAGAGTAGTTGTCGGATTAATTGTATATCTTGTTGGTGCACTGTTAATAATGGAAGTGTGGTTTGGAATTCAAGCTTTGTTGTTTTGTTTGCGAATTTGTGGTGACTTTGATTTTAAGAATCATTAGACACTTGAATTATTTGAGCTTGTGAGGTATGTAATTTGCATTTTTTGTGATTTTTGCTGATCGGAAATTGTAAAGATTTCGTCTTTATTGAGATGAAAGGTGAAATAGTAGTATTGGATTTAGTTATATATATTGTTGCTTTGACTTTTGAACTAGTGTAAATAATGGAAGTGAGGTTTGGAATTCAAGCTTTGTTGTTTTGTTTGCATATTTGTGGTGACTTTGAATTGTCTGAGCTTGTGAGGTATGAAATTTGCATTTTTTGTTATTTTTGCTGATTGAAAATTGTGTAAGTTTCGTCTTTATTGAGATGAAGGGTGATATAGTAGTTATCGCATTGGTTATGTATCTTGTTGCTTTGATTCTACACTGAAATAATGAAGTGCAGTTTGGAATTCAAGCTTTGTTGTTTTGTTTGCATTTAGTTGACTTTGATTATAAGATTCACTAGACACAGCTGAATTGTTCGAGCTTAGTTGTTTTGTTAGCTGGTATATAGTTGTGTAATTTGCATTTTTTTAATATGTGCTGATTGAAAATTGTAAAGATTTCATCTTTATTGAGATGAAGGTGATATAGTAGTCATCGGATTAGTTATATATATCTAGTTGTTGTGATTCATGAACTACTGTTAATAATGAATGTGAGGTTTGGAATTCAAGCTTCCTTGTTTTGGTTGCAAATTTGTGGTGACTTTGACTTTGATTTAAAGATTTATTAAACACTTGAATTGTTCGAGTTTTTTTTTTTTTCAATTTTGTGTTGACTTTGATTTTAGAATTGTTGAGAGAAACTAACAATATTTTTCTTTATTTTTACACGTCTCTTTTGTGTTTTTTGCAACTTCAATCCTTTTTGTACACATAAAATTCCATAAATTGCAATTTGGTGGAGGAATATTTATCACTTTTATTCACTTTTTTTCTTGCGGGGTGGGGGAAATTGAGTCACAACTTTGAGAATTAGAATTATATGTGCTCAATTTCAAGAAAATTTGTATCTTGGAGCTGTAAATTGATGAGCTATTTTCTAAGACCACATAAGGATTACTTCAGTCAACTGTTCTAGTCACTCCAATACGGCTTTTTACCTTATGGCCCACGGTTCAAAGCTTGGTGGATAATGGGCCCACACATCTAACCTTCTTTGGGACTTTACTTAAATAACAAGGTTTTATCTACACGAGGGTTCGAATCCATGGTGGCGCTCCACCACACATCACGTGCTGCACTCTGACTACTAGATCAAAACCTGACATTTGGCATTAGTTTTGAACTTTGTCGCAATTGGTTCTTTATGCTTTTTTCATAGGGACCATATTTTACATTCACTTCTAAAGAAGAACTGTGTGTTTTTTCTGTCTAGTGGATTGTTCAATTGATGTTGCTATGTTGGTGGAAATTAGGTGAAGGGACCTTCCGGGGAGCAGCTTCATGATTTTCGTGACAAAATAAGTGAGAAGAACGAGTTTGTGGCCCATCATGAAGGAGTTTATCGTTTCTGTTTCACCAACAAGTCACCCTATCATGAAACCATAGACTTTGATCTACATGCTGCCCACTTCTCATACCACGACGAGCACGCAAAAGATGGTTAGCGTGTCACTTTGCTTCATCTTACTTTGTTATTAGGGGGCTCTTTACAAGATATCTTACTTTTTATTATGATACTGCAGAGCATTTCAAACCGTTGTTTGAGCACATTGGACAACTAGAGGAAGCTTTATACAACATTCAGTTTGAGCAGCATTGGCTCGAGGCCCAGACAGACCGACAAG-CAATAGGTATTAGCTTTTGCATATTTCTTATATACGACTCTCCCACATTTCAGCAAATCAAATTTTTCCAACCACTTGCCATTTATCTAGTAGAAACAGTCCTTTTCTCCCTTTTGGCGTACACTTCAATGAGATAATTCTCCTTTCCCATTTTCCTCACTTTTTCACGTGATGTTCAACATAAATCCGGTGAAATGATCGTTATTGCTTCAGTTTCAGTTTGTTAAACCTAATTTTCAAATTTTTTTTCATTGTTCAATTTTACAAGATTGAGGATGCACATCTCTCCTCCATCTTGAATTATGTGAATGGTCATGAACTTTAGCACATGACCATTTAAGCCCAATATTCTTGGTAATGCTAAAGATGTGCAAGATTGTTTTATGCTATGTTGCTCGGACTCTTCAAAAATGTCGACATGTGCATTTCGGATACTCCAAAGTAGTTCATTTTGGAGAATCCTGACACAGCTGCGGCAACAATTTTGGAGAGTCCGAGCAACATAGGTTTTATGAACTTCATATGTTGTGTTTTTTGGATAATGATACGTGTATTATATATCCGTGACTTAGTTGTTTGAATATTCATATTGAGTATCACTTTTCTGTTCACTAGCAACAAGGGAATATCATTTATATGATCTGTTTCTCTTGGGTGTTGGCATCTCAATTTTATACTAATGGCAAAAGTCATGTTCACAAATCTTGCCAATTCATGATACTCTGCATGCTCCACAGCTTGTAGTTCTAATACGTTGATATCGTTTCTATTTATGCAGTGAATGAAATAATGAGCAAAAG</genome_strand>
        <mrna_strand>AAAAATCGTACAAATTTCAAACTCTTGTCCAAAATCCCAATTTTTTCGCCAAGAAAAG..........................................................................................ATGAGAATTGGGTCATTGAAAGTTTGGATCTTGGTGACTATATTGGTGGTGGCATGGAGATGTGGAGGGGTTTATGGAATTAGATTTGTGATTGATAGAGAAGAATGTTTTTCACATAAAGTTCAAATGGGAGAATCAGTCCATTTTTCGTTTGTTGTTATCAAATCAGAAGGTTCTTGGCATTATAGTGAAGAGGGTGTTGACCTTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGGGACCTTCCGGGGAGCAGCTTCATGATTTTCGTGACAAAATAAGTGAGAAGAACGAGTTTGTGGCCCATCATGAAGGAGTTTATCGTTTCTGTTTCACCAACAAGTCACCCTATCATGAAACCATAGACTTTGATCTACATGCTGCCCACTTCTTATACCACGACGAGCACGCAAAAGATG...................................................................................AGCATTTCAAACCGTTGTTTGAGCACATTGGACAACTAGAGGAAGCTTTATACAACATTCAGTTTGAGCAGCATTGGCTCGAGGCCCAGACAGACCGACAGGCCATTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGAAATAATGAGCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E303980" ref_strand="+" ref_description="SGN-E303980 [cLEX-4-N4]">
      <seq>aaaaatcgtacaaatttcaaactcttgtccaaaatcccaattttttcgccaagaaaagatgagaattgggtcattgaaagtttggatcttggtgactatattggtggtggcatggagatgtggaggggtttatggaattagatttgtgattgatagagaagaatgtttttcacataaagttcaaatgggagaatcagtccatttttcgtttgttgttatcaaatcagaaggttcttggcattatagtgaagagggtgttgaccttgtggtgaagggaccttccggggagcagcttcatgattttcgtgacaaaataagtgagaagaacgagtttgtggcccatcatgaaggagtttatcgtttctgtttcaccaacaagtcaccctatcatgaaaccatagactttgatctacatgctgcccacttctcataccacgacgagcacgcaaaagatgagcatttcaaaccgttgtttgagcacattggacaactagaggaagctttatacaacattcagtttgagcagcattggctcgaggcccagacagaccgacaagcaatagtgaatgaaataatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="44062" stop="41064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43762" g_stop="43705" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43704" i_stop="43615" i_length="90">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43614" g_stop="43405" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="268" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43404" i_stop="41755" i_length="1650">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41754" g_stop="41568" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="455" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41567" i_stop="41485" i_length="83">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41484" g_stop="41377" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="563" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E303980" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43762" e_stop="43705"/>
          <exon e_start="43614" e_stop="43405"/>
          <exon e_start="41754" e_stop="41568"/>
          <exon e_start="41484" e_stop="41377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCGTACAAATTTCAAACTCTTGTCCAAAATCCCAATTTTTTCGCCAAGAAAAGGTAAACCCTAGTTCTAAAAATCCAATTTTTTGATGTTTTTTTGTTCAATTTGATTTTTTTTGTGAAATTAAAACTGAGAATTAATTGCAGATGAGAATTGGGTCATTGAAAGTTTGGATCTTGGTGACTATATTGGTGGTGGCATGGAGATGTGGAGGGGTTTATGGAATTAGATTTGTGATTGATAGAGAAGAATGTTTTTCACATAAAGTTCAAATGGGAGAATCAGTCCATTTTTCGTTTGTTGTTATCAAATCAGAAGGTTCTTGGCATTATAGTGAAGAGGGTGTTGACCTTGTGGTAACTAAATTACTTTAATCTAGCTGTTTGTGTTTTTTCTGTTATGTAATTTGCAGTTTTTGTGATTTCTGATGATTGTGAATGGTAAAGATTTTGTCTTTATTGAGATGAAAGGCGATAGAGTAGTTGTCGGATTAATTGTATATCTTGTTGGTGCACTGTTAATAATGGAAGTGTGGTTTGGAATTCAAGCTTTGTTGTTTTGTTTGCGAATTTGTGGTGACTTTGATTTTAAGAATCATTAGACACTTGAATTATTTGAGCTTGTGAGGTATGTAATTTGCATTTTTTGTGATTTTTGCTGATCGGAAATTGTAAAGATTTCGTCTTTATTGAGATGAAAGGTGAAATAGTAGTATTGGATTTAGTTATATATATTGTTGCTTTGACTTTTGAACTAGTGTAAATAATGGAAGTGAGGTTTGGAATTCAAGCTTTGTTGTTTTGTTTGCATATTTGTGGTGACTTTGAATTGTCTGAGCTTGTGAGGTATGAAATTTGCATTTTTTGTTATTTTTGCTGATTGAAAATTGTGTAAGTTTCGTCTTTATTGAGATGAAGGGTGATATAGTAGTTATCGCATTGGTTATGTATCTTGTTGCTTTGATTCTACACTGAAATAATGAAGTGCAGTTTGGAATTCAAGCTTTGTTGTTTTGTTTGCATTTAGTTGACTTTGATTATAAGATTCACTAGACACAGCTGAATTGTTCGAGCTTAGTTGTTTTGTTAGCTGGTATATAGTTGTGTAATTTGCATTTTTTTAATATGTGCTGATTGAAAATTGTAAAGATTTCATCTTTATTGAGATGAAGGTGATATAGTAGTCATCGGATTAGTTATATATATCTAGTTGTTGTGATTCATGAACTACTGTTAATAATGAATGTGAGGTTTGGAATTCAAGCTTCCTTGTTTTGGTTGCAAATTTGTGGTGACTTTGACTTTGATTTAAAGATTTATTAAACACTTGAATTGTTCGAGTTTTTTTTTTTTTCAATTTTGTGTTGACTTTGATTTTAGAATTGTTGAGAGAAACTAACAATATTTTTCTTTATTTTTACACGTCTCTTTTGTGTTTTTTGCAACTTCAATCCTTTTTGTACACATAAAATTCCATAAATTGCAATTTGGTGGAGGAATATTTATCACTTTTATTCACTTTTTTTCTTGCGGGGTGGGGGAAATTGAGTCACAACTTTGAGAATTAGAATTATATGTGCTCAATTTCAAGAAAATTTGTATCTTGGAGCTGTAAATTGATGAGCTATTTTCTAAGACCACATAAGGATTACTTCAGTCAACTGTTCTAGTCACTCCAATACGGCTTTTTACCTTATGGCCCACGGTTCAAAGCTTGGTGGATAATGGGCCCACACATCTAACCTTCTTTGGGACTTTACTTAAATAACAAGGTTTTATCTACACGAGGGTTCGAATCCATGGTGGCGCTCCACCACACATCACGTGCTGCACTCTGACTACTAGATCAAAACCTGACATTTGGCATTAGTTTTGAACTTTGTCGCAATTGGTTCTTTATGCTTTTTTCATAGGGACCATATTTTACATTCACTTCTAAAGAAGAACTGTGTGTTTTTTCTGTCTAGTGGATTGTTCAATTGATGTTGCTATGTTGGTGGAAATTAGGTGAAGGGACCTTCCGGGGAGCAGCTTCATGATTTTCGTGACAAAATAAGTGAGAAGAACGAGTTTGTGGCCCATCATGAAGGAGTTTATCGTTTCTGTTTCACCAACAAGTCACCCTATCATGAAACCATAGACTTTGATCTACATGCTGCCCACTTCTCATACCACGACGAGCACGCAAAAGATGGTTAGCGTGTCACTTTGCTTCATCTTACTTTGTTATTAGGGGGCTCTTTACAAGATATCTTACTTTTTATTATGATACTGCAGAGCATTTCAAACCGTTGTTTGAGCACATTGGACAACTAGAGGAAGCTTTATACAACATTCAGTTTGAGCAGCATTGGCTCGAGGCCCAGACAGACCGACAAGCAATAG</genome_strand>
        <mrna_strand>AAAAATCGTACAAATTTCAAACTCTTGTCCAAAATCCCAATTTTTTCGCCAAGAAAAG..........................................................................................ATGAGAATTGGGTCATTGAAAGTTTGGATCTTGGTGACTATATTGGTGGTGGCATGGAGATGTGGAGGGGTTTATGGAATTAGATTTGTGATTGATAGAGAAGAATGTTTTTCACATAAAGTTCAAATGGGAGAATCAGTCCATTTTTCGTTTGTTGTTATCAAATCAGAAGGTTCTTGGCATTATAGTGAAGAGGGTGTTGACCTTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGGGACCTTCCGGGGAGCAGCTTCATGATTTTCGTGACAAAATAAGTGAGAAGAACGAGTTTGTGGCCCATCATGAAGGAGTTTATCGTTTCTGTTTCACCAACAAGTCACCCTATCATGAAACCATAGACTTTGATCTACATGCTGCCCACTTCTCATACCACGACGAGCACGCAAAAGATG...................................................................................AGCATTTCAAACCGTTGTTTGAGCACATTGGACAACTAGAGGAAGCTTTATACAACATTCAGTTTGAGCAGCATTGGCTCGAGGCCCAGACAGACCGACAAGCAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E254729" ref_strand="+" ref_description="SGN-E254729 [cLEG-29-P6]">
      <seq>acaacaaaaatcgtacaaatttcaaactcttgtccaaaatcccaattttttcgccaagaaaagatgagaattgggtcattgaaagtttggatcttggtgactatattggtggtggcatggagatgtggaggggtttatggaattagatttgtgattgatagagaagaatgtttttcacataaagttcaaatgggagaatcagtccatttttcgtttgttgttatcaaatcagaaggttcttggcattatagtgaagagggtgttgaccttgtggtgaagggaccttccggggagcagcttcatgattttcgtgacaaaataagtgagaagaacgagtttgtggcccatcatgaaggagtttatcgtttctgtttcaccaacaagtcaccctatcatgaaaccatagactttgatctacatgctgcccacttctcataccacgacgagcacgcaaaagatgagcatttcaaaccgttgtttgagcacattggacaactagaggaagctttatacaacattcagtttgagcagcattggctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="44067" stop="41104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43767" g_stop="43705" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43704" i_stop="43615" i_length="90">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43614" g_stop="43405" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="273" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43404" i_stop="41755" i_length="1650">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41754" g_stop="41568" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="460" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41567" i_stop="41485" i_length="83">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41484" g_stop="41404" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="541" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E254729" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43767" e_stop="43705"/>
          <exon e_start="43614" e_stop="43405"/>
          <exon e_start="41754" e_stop="41568"/>
          <exon e_start="41484" e_stop="41404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACAAAAATCGTACAAATTTCAAACTCTTGTCCAAAATCCCAATTTTTTCGCCAAGAAAAGGTAAACCCTAGTTCTAAAAATCCAATTTTTTGATGTTTTTTTGTTCAATTTGATTTTTTTTGTGAAATTAAAACTGAGAATTAATTGCAGATGAGAATTGGGTCATTGAAAGTTTGGATCTTGGTGACTATATTGGTGGTGGCATGGAGATGTGGAGGGGTTTATGGAATTAGATTTGTGATTGATAGAGAAGAATGTTTTTCACATAAAGTTCAAATGGGAGAATCAGTCCATTTTTCGTTTGTTGTTATCAAATCAGAAGGTTCTTGGCATTATAGTGAAGAGGGTGTTGACCTTGTGGTAACTAAATTACTTTAATCTAGCTGTTTGTGTTTTTTCTGTTATGTAATTTGCAGTTTTTGTGATTTCTGATGATTGTGAATGGTAAAGATTTTGTCTTTATTGAGATGAAAGGCGATAGAGTAGTTGTCGGATTAATTGTATATCTTGTTGGTGCACTGTTAATAATGGAAGTGTGGTTTGGAATTCAAGCTTTGTTGTTTTGTTTGCGAATTTGTGGTGACTTTGATTTTAAGAATCATTAGACACTTGAATTATTTGAGCTTGTGAGGTATGTAATTTGCATTTTTTGTGATTTTTGCTGATCGGAAATTGTAAAGATTTCGTCTTTATTGAGATGAAAGGTGAAATAGTAGTATTGGATTTAGTTATATATATTGTTGCTTTGACTTTTGAACTAGTGTAAATAATGGAAGTGAGGTTTGGAATTCAAGCTTTGTTGTTTTGTTTGCATATTTGTGGTGACTTTGAATTGTCTGAGCTTGTGAGGTATGAAATTTGCATTTTTTGTTATTTTTGCTGATTGAAAATTGTGTAAGTTTCGTCTTTATTGAGATGAAGGGTGATATAGTAGTTATCGCATTGGTTATGTATCTTGTTGCTTTGATTCTACACTGAAATAATGAAGTGCAGTTTGGAATTCAAGCTTTGTTGTTTTGTTTGCATTTAGTTGACTTTGATTATAAGATTCACTAGACACAGCTGAATTGTTCGAGCTTAGTTGTTTTGTTAGCTGGTATATAGTTGTGTAATTTGCATTTTTTTAATATGTGCTGATTGAAAATTGTAAAGATTTCATCTTTATTGAGATGAAGGTGATATAGTAGTCATCGGATTAGTTATATATATCTAGTTGTTGTGATTCATGAACTACTGTTAATAATGAATGTGAGGTTTGGAATTCAAGCTTCCTTGTTTTGGTTGCAAATTTGTGGTGACTTTGACTTTGATTTAAAGATTTATTAAACACTTGAATTGTTCGAGTTTTTTTTTTTTTCAATTTTGTGTTGACTTTGATTTTAGAATTGTTGAGAGAAACTAACAATATTTTTCTTTATTTTTACACGTCTCTTTTGTGTTTTTTGCAACTTCAATCCTTTTTGTACACATAAAATTCCATAAATTGCAATTTGGTGGAGGAATATTTATCACTTTTATTCACTTTTTTTCTTGCGGGGTGGGGGAAATTGAGTCACAACTTTGAGAATTAGAATTATATGTGCTCAATTTCAAGAAAATTTGTATCTTGGAGCTGTAAATTGATGAGCTATTTTCTAAGACCACATAAGGATTACTTCAGTCAACTGTTCTAGTCACTCCAATACGGCTTTTTACCTTATGGCCCACGGTTCAAAGCTTGGTGGATAATGGGCCCACACATCTAACCTTCTTTGGGACTTTACTTAAATAACAAGGTTTTATCTACACGAGGGTTCGAATCCATGGTGGCGCTCCACCACACATCACGTGCTGCACTCTGACTACTAGATCAAAACCTGACATTTGGCATTAGTTTTGAACTTTGTCGCAATTGGTTCTTTATGCTTTTTTCATAGGGACCATATTTTACATTCACTTCTAAAGAAGAACTGTGTGTTTTTTCTGTCTAGTGGATTGTTCAATTGATGTTGCTATGTTGGTGGAAATTAGGTGAAGGGACCTTCCGGGGAGCAGCTTCATGATTTTCGTGACAAAATAAGTGAGAAGAACGAGTTTGTGGCCCATCATGAAGGAGTTTATCGTTTCTGTTTCACCAACAAGTCACCCTATCATGAAACCATAGACTTTGATCTACATGCTGCCCACTTCTCATACCACGACGAGCACGCAAAAGATGGTTAGCGTGTCACTTTGCTTCATCTTACTTTGTTATTAGGGGGCTCTTTACAAGATATCTTACTTTTTATTATGATACTGCAGAGCATTTCAAACCGTTGTTTGAGCACATTGGACAACTAGAGGAAGCTTTATACAACATTCAGTTTGAGCAGCATTGGCTCG</genome_strand>
        <mrna_strand>ACAACAAAAATCGTACAAATTTCAAACTCTTGTCCAAAATCCCAATTTTTTCGCCAAGAAAAG..........................................................................................ATGAGAATTGGGTCATTGAAAGTTTGGATCTTGGTGACTATATTGGTGGTGGCATGGAGATGTGGAGGGGTTTATGGAATTAGATTTGTGATTGATAGAGAAGAATGTTTTTCACATAAAGTTCAAATGGGAGAATCAGTCCATTTTTCGTTTGTTGTTATCAAATCAGAAGGTTCTTGGCATTATAGTGAAGAGGGTGTTGACCTTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGGGACCTTCCGGGGAGCAGCTTCATGATTTTCGTGACAAAATAAGTGAGAAGAACGAGTTTGTGGCCCATCATGAAGGAGTTTATCGTTTCTGTTTCACCAACAAGTCACCCTATCATGAAACCATAGACTTTGATCTACATGCTGCCCACTTCTCATACCACGACGAGCACGCAAAAGATG...................................................................................AGCATTTCAAACCGTTGTTTGAGCACATTGGACAACTAGAGGAAGCTTTATACAACATTCAGTTTGAGCAGCATTGGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E260034" ref_strand="+" ref_description="SGN-E260034 [cLEG-52-C2]">
      <seq>acaacaaaaatcgtacaaatttcaaactcttgtccaaaatcccaattttttcgccaagaaaagatgagaattgggtcattgaaagtttggatcttggtgactatattggtggtggcatggagatgtggaggggtttatggaattagatttgtgattgatagagaagaatgtttttcacataaagttcaaatgggagaatcagtccatttttcgtttgttgttatcaaatcagaaggttcttggcattatagtgaagagggtgttgaccttgtggtgaagggaccttccggggagcagcttcatgattttcgtgacaaaataagtgagaagaacgagtttgtggcccatcatgaaggagtttatcgtttctgtttcaccaacaagtcaccctatcatgaaaccatagactttgatctacatgctgcccacttctcataccacgacgagcacgcaaaagatgagcatttcaaaccgttgtttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="44067" stop="41162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43767" g_stop="43705" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43704" i_stop="43615" i_length="90">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43614" g_stop="43405" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="273" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43404" i_stop="41755" i_length="1650">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41754" g_stop="41568" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="460" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41567" i_stop="41485" i_length="83">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41484" g_stop="41462" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="483" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E260034" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43767" e_stop="43705"/>
          <exon e_start="43614" e_stop="43405"/>
          <exon e_start="41754" e_stop="41568"/>
          <exon e_start="41484" e_stop="41462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACAAAAATCGTACAAATTTCAAACTCTTGTCCAAAATCCCAATTTTTTCGCCAAGAAAAGGTAAACCCTAGTTCTAAAAATCCAATTTTTTGATGTTTTTTTGTTCAATTTGATTTTTTTTGTGAAATTAAAACTGAGAATTAATTGCAGATGAGAATTGGGTCATTGAAAGTTTGGATCTTGGTGACTATATTGGTGGTGGCATGGAGATGTGGAGGGGTTTATGGAATTAGATTTGTGATTGATAGAGAAGAATGTTTTTCACATAAAGTTCAAATGGGAGAATCAGTCCATTTTTCGTTTGTTGTTATCAAATCAGAAGGTTCTTGGCATTATAGTGAAGAGGGTGTTGACCTTGTGGTAACTAAATTACTTTAATCTAGCTGTTTGTGTTTTTTCTGTTATGTAATTTGCAGTTTTTGTGATTTCTGATGATTGTGAATGGTAAAGATTTTGTCTTTATTGAGATGAAAGGCGATAGAGTAGTTGTCGGATTAATTGTATATCTTGTTGGTGCACTGTTAATAATGGAAGTGTGGTTTGGAATTCAAGCTTTGTTGTTTTGTTTGCGAATTTGTGGTGACTTTGATTTTAAGAATCATTAGACACTTGAATTATTTGAGCTTGTGAGGTATGTAATTTGCATTTTTTGTGATTTTTGCTGATCGGAAATTGTAAAGATTTCGTCTTTATTGAGATGAAAGGTGAAATAGTAGTATTGGATTTAGTTATATATATTGTTGCTTTGACTTTTGAACTAGTGTAAATAATGGAAGTGAGGTTTGGAATTCAAGCTTTGTTGTTTTGTTTGCATATTTGTGGTGACTTTGAATTGTCTGAGCTTGTGAGGTATGAAATTTGCATTTTTTGTTATTTTTGCTGATTGAAAATTGTGTAAGTTTCGTCTTTATTGAGATGAAGGGTGATATAGTAGTTATCGCATTGGTTATGTATCTTGTTGCTTTGATTCTACACTGAAATAATGAAGTGCAGTTTGGAATTCAAGCTTTGTTGTTTTGTTTGCATTTAGTTGACTTTGATTATAAGATTCACTAGACACAGCTGAATTGTTCGAGCTTAGTTGTTTTGTTAGCTGGTATATAGTTGTGTAATTTGCATTTTTTTAATATGTGCTGATTGAAAATTGTAAAGATTTCATCTTTATTGAGATGAAGGTGATATAGTAGTCATCGGATTAGTTATATATATCTAGTTGTTGTGATTCATGAACTACTGTTAATAATGAATGTGAGGTTTGGAATTCAAGCTTCCTTGTTTTGGTTGCAAATTTGTGGTGACTTTGACTTTGATTTAAAGATTTATTAAACACTTGAATTGTTCGAGTTTTTTTTTTTTTCAATTTTGTGTTGACTTTGATTTTAGAATTGTTGAGAGAAACTAACAATATTTTTCTTTATTTTTACACGTCTCTTTTGTGTTTTTTGCAACTTCAATCCTTTTTGTACACATAAAATTCCATAAATTGCAATTTGGTGGAGGAATATTTATCACTTTTATTCACTTTTTTTCTTGCGGGGTGGGGGAAATTGAGTCACAACTTTGAGAATTAGAATTATATGTGCTCAATTTCAAGAAAATTTGTATCTTGGAGCTGTAAATTGATGAGCTATTTTCTAAGACCACATAAGGATTACTTCAGTCAACTGTTCTAGTCACTCCAATACGGCTTTTTACCTTATGGCCCACGGTTCAAAGCTTGGTGGATAATGGGCCCACACATCTAACCTTCTTTGGGACTTTACTTAAATAACAAGGTTTTATCTACACGAGGGTTCGAATCCATGGTGGCGCTCCACCACACATCACGTGCTGCACTCTGACTACTAGATCAAAACCTGACATTTGGCATTAGTTTTGAACTTTGTCGCAATTGGTTCTTTATGCTTTTTTCATAGGGACCATATTTTACATTCACTTCTAAAGAAGAACTGTGTGTTTTTTCTGTCTAGTGGATTGTTCAATTGATGTTGCTATGTTGGTGGAAATTAGGTGAAGGGACCTTCCGGGGAGCAGCTTCATGATTTTCGTGACAAAATAAGTGAGAAGAACGAGTTTGTGGCCCATCATGAAGGAGTTTATCGTTTCTGTTTCACCAACAAGTCACCCTATCATGAAACCATAGACTTTGATCTACATGCTGCCCACTTCTCATACCACGACGAGCACGCAAAAGATGGTTAGCGTGTCACTTTGCTTCATCTTACTTTGTTATTAGGGGGCTCTTTACAAGATATCTTACTTTTTATTATGATACTGCAGAGCATTTCAAACCGTTGTTTGAG</genome_strand>
        <mrna_strand>ACAACAAAAATCGTACAAATTTCAAACTCTTGTCCAAAATCCCAATTTTTTCGCCAAGAAAAG..........................................................................................ATGAGAATTGGGTCATTGAAAGTTTGGATCTTGGTGACTATATTGGTGGTGGCATGGAGATGTGGAGGGGTTTATGGAATTAGATTTGTGATTGATAGAGAAGAATGTTTTTCACATAAAGTTCAAATGGGAGAATCAGTCCATTTTTCGTTTGTTGTTATCAAATCAGAAGGTTCTTGGCATTATAGTGAAGAGGGTGTTGACCTTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGGGACCTTCCGGGGAGCAGCTTCATGATTTTCGTGACAAAATAAGTGAGAAGAACGAGTTTGTGGCCCATCATGAAGGAGTTTATCGTTTCTGTTTCACCAACAAGTCACCCTATCATGAAACCATAGACTTTGATCTACATGCTGCCCACTTCTCATACCACGACGAGCACGCAAAAGATG...................................................................................AGCATTTCAAACCGTTGTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E543245" ref_strand="+" ref_description="SGN-E543245 [TUS-64-P10]">
      <seq>caaaaatcgtacaaatttcaaactcttgtccaaaatcccaattttttcgccaagaaaagatgagaattgggtcattgaaagtttggatcttggtgactatattggtggtggcatggagatgtggaggggtttatggaattagatttgtgattgatagagaagaatgtttttcacataaagttcaaatgggagaatcagtccatttttcgtttgttgttatcaaatcagaaggttcttggcattatagtgaagagggtgttgaccttgtggtgaagggaccttccggggagcagcttcatgattttcgtgacaaaataagtgagaagaacgagtttgtggcccatcatgaaggagtttatcgtttctgtttcaccaacaagtcaccctatcatgaaaccatagacatttgatcttcatgctgcccacttctcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="44063" stop="41291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43763" g_stop="43705" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43704" i_stop="43615" i_length="90">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43614" g_stop="43405" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="269" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43404" i_stop="41755" i_length="1650">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41754" g_stop="41591" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="434" r_length="165" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E543245" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43763" e_stop="43705"/>
          <exon e_start="43614" e_stop="43405"/>
          <exon e_start="41754" e_stop="41591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATCGTACAAATTTCAAACTCTTGTCCAAAATCCCAATTTTTTCGCCAAGAAAAGGTAAACCCTAGTTCTAAAAATCCAATTTTTTGATGTTTTTTTGTTCAATTTGATTTTTTTTGTGAAATTAAAACTGAGAATTAATTGCAGATGAGAATTGGGTCATTGAAAGTTTGGATCTTGGTGACTATATTGGTGGTGGCATGGAGATGTGGAGGGGTTTATGGAATTAGATTTGTGATTGATAGAGAAGAATGTTTTTCACATAAAGTTCAAATGGGAGAATCAGTCCATTTTTCGTTTGTTGTTATCAAATCAGAAGGTTCTTGGCATTATAGTGAAGAGGGTGTTGACCTTGTGGTAACTAAATTACTTTAATCTAGCTGTTTGTGTTTTTTCTGTTATGTAATTTGCAGTTTTTGTGATTTCTGATGATTGTGAATGGTAAAGATTTTGTCTTTATTGAGATGAAAGGCGATAGAGTAGTTGTCGGATTAATTGTATATCTTGTTGGTGCACTGTTAATAATGGAAGTGTGGTTTGGAATTCAAGCTTTGTTGTTTTGTTTGCGAATTTGTGGTGACTTTGATTTTAAGAATCATTAGACACTTGAATTATTTGAGCTTGTGAGGTATGTAATTTGCATTTTTTGTGATTTTTGCTGATCGGAAATTGTAAAGATTTCGTCTTTATTGAGATGAAAGGTGAAATAGTAGTATTGGATTTAGTTATATATATTGTTGCTTTGACTTTTGAACTAGTGTAAATAATGGAAGTGAGGTTTGGAATTCAAGCTTTGTTGTTTTGTTTGCATATTTGTGGTGACTTTGAATTGTCTGAGCTTGTGAGGTATGAAATTTGCATTTTTTGTTATTTTTGCTGATTGAAAATTGTGTAAGTTTCGTCTTTATTGAGATGAAGGGTGATATAGTAGTTATCGCATTGGTTATGTATCTTGTTGCTTTGATTCTACACTGAAATAATGAAGTGCAGTTTGGAATTCAAGCTTTGTTGTTTTGTTTGCATTTAGTTGACTTTGATTATAAGATTCACTAGACACAGCTGAATTGTTCGAGCTTAGTTGTTTTGTTAGCTGGTATATAGTTGTGTAATTTGCATTTTTTTAATATGTGCTGATTGAAAATTGTAAAGATTTCATCTTTATTGAGATGAAGGTGATATAGTAGTCATCGGATTAGTTATATATATCTAGTTGTTGTGATTCATGAACTACTGTTAATAATGAATGTGAGGTTTGGAATTCAAGCTTCCTTGTTTTGGTTGCAAATTTGTGGTGACTTTGACTTTGATTTAAAGATTTATTAAACACTTGAATTGTTCGAGTTTTTTTTTTTTTCAATTTTGTGTTGACTTTGATTTTAGAATTGTTGAGAGAAACTAACAATATTTTTCTTTATTTTTACACGTCTCTTTTGTGTTTTTTGCAACTTCAATCCTTTTTGTACACATAAAATTCCATAAATTGCAATTTGGTGGAGGAATATTTATCACTTTTATTCACTTTTTTTCTTGCGGGGTGGGGGAAATTGAGTCACAACTTTGAGAATTAGAATTATATGTGCTCAATTTCAAGAAAATTTGTATCTTGGAGCTGTAAATTGATGAGCTATTTTCTAAGACCACATAAGGATTACTTCAGTCAACTGTTCTAGTCACTCCAATACGGCTTTTTACCTTATGGCCCACGGTTCAAAGCTTGGTGGATAATGGGCCCACACATCTAACCTTCTTTGGGACTTTACTTAAATAACAAGGTTTTATCTACACGAGGGTTCGAATCCATGGTGGCGCTCCACCACACATCACGTGCTGCACTCTGACTACTAGATCAAAACCTGACATTTGGCATTAGTTTTGAACTTTGTCGCAATTGGTTCTTTATGCTTTTTTCATAGGGACCATATTTTACATTCACTTCTAAAGAAGAACTGTGTGTTTTTTCTGTCTAGTGGATTGTTCAATTGATGTTGCTATGTTGGTGGAAATTAGGTGAAGGGACCTTCCGGGGAGCAGCTTCATGATTTTCGTGACAAAATAAGTGAGAAGAACGAGTTTGTGGCCCATCATGAAGGAGTTTATCGTTTCTGTTTCACCAACAAGTCACCCTATCATGAAACCATAGAC-TTTGATCTACATGCTGCCCACTTCTCATA</genome_strand>
        <mrna_strand>CAAAAATCGTACAAATTTCAAACTCTTGTCCAAAATCCCAATTTTTTCGCCAAGAAAAG..........................................................................................ATGAGAATTGGGTCATTGAAAGTTTGGATCTTGGTGACTATATTGGTGGTGGCATGGAGATGTGGAGGGGTTTATGGAATTAGATTTGTGATTGATAGAGAAGAATGTTTTTCACATAAAGTTCAAATGGGAGAATCAGTCCATTTTTCGTTTGTTGTTATCAAATCAGAAGGTTCTTGGCATTATAGTGAAGAGGGTGTTGACCTTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGGGACCTTCCGGGGAGCAGCTTCATGATTTTCGTGACAAAATAAGTGAGAAGAACGAGTTTGTGGCCCATCATGAAGGAGTTTATCGTTTCTGTTTCACCAACAAGTCACCCTATCATGAAACCATAGACATTTGATCTTCATGCTGCCCACTTCTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E340910" ref_strand="+" ref_description="SGN-E340910 [cTOF-5-K17]">
      <seq>tttcaacatacacagcttttctttttttctttagctttttgtaaaactttcaaatcatctcttaattcaagattccttgtctttactgtttgaattttttctttgtttttgcttattgaaactacccatatctcaatttttcctcttttcatagtttcactaactaaatagtgttttccccttcaaaggaattgtcttttctcttcttttatactttgctattgagggtttagataaaaaaaaaaaagattgtcttttgagtgtttggggcagtttgtttttgctgtttggtttgtgggtttgtgttgattagttgaaagattgacttttttttgaagatttttggtcaaccacttttgcttatctctgagaatttgctgctttgtatcaacccttttggcctttgggagttaaaagatttgatggtttctagggtttatggatgattaggggcttttcatcatttaagtgattctgtgtaaaagattaagatatgggtttcaaaagacccgtataaacctanctggatctccaaaagtacatgttggggagatagatacaagtgcaccatttcagtctgtcaaagatgctgttaactttgtttggggagggtgcattctcaggggaaaaacctgncatcaggaaggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="52103" stop="55087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52403" g_stop="52871" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52872" i_stop="54609" i_length="1738">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.905" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54610" g_stop="54784" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="646" r_length="178" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E340910" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52403" e_stop="52871"/>
          <exon e_start="54610" e_stop="54784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAACATACACAGCTTTTCTTTTTTTCTTTAGCTTTTTGTAAAACTTTCAAATCATCTCTTAATTCAAGATTCCTTGTCTTTACTGTTTGAATTTTTTTTCTTTGTTTTTGCTTATTGAAACTACCCATATCTCAATTTTTCCTCTTTTCATAGTTTCACTAACTAAATAGTGTTTTCCCCTTCAAAGGAATTGTCTTTTCTCTTCTTTTATACTTTGCTATTGAGGGTTTAGATAAAAAAAAAAAAGATTGTCTTTTGAGTGTTTGGGGCAGTTTGTTTTTGCTGTTTGGTTTGTGGGTTTGTGTTGATTAGTTGAAAGATTGACTTTTTTTTGAAGATTTTTGGTCAACCACTTTTGCTTATCTCTGAGAATTTGCTGCTTTGTATCAACCCTTTTGGCCTTTGGGAGTTAAAAGATTTGATGGTTTCTAGGGTTTATGGATGATTA-GGGCTTTTCATCATTTAGGTAAGCCCTTTTTCCTCTTTTACCCTTTTGCTTGCCTGTTATTGTTGTTGTTGTTGTATTTGTTGTTGAAGAAGGGTTAAAGTTGATGTCTTTATTAGACTCGGTGAATAGAATTTGGTTCTTGTTAGTTGTTATTATACTATTGGGTAAATTGTAATGGAGAAATGTAATGATTGTCTTTTTGAGTTGTTTTTGAATTTATTATGGGTTTCAGATTGAACATTGTCCTGTTTATTTTTATTGTGTGTATTTCTTAAGGCCTTTGAATTGTTAAGTTGTATGAGAATATGTGTATGTACACCTGCAATTTAATGCACTGAAATGGTTTGATTGCTTCCCTTTTAACAGATTTCAAATTTTGTTTACCTAAAAAAGTTGAAACGTGTTACTGTATGTGTTTATTGTGACCTTAGAGAGTGAAAATGTTTACATTCTTGGCTTAGCATACATTTTCAGGGATGTTTGTAGAGGTGTTTGTTTCTCTGTACTCACAATGGCATCTGTTTCGATCTTTTTGTTTCACTTCCGATAATGAATGACTAGGCAGCTATTCGCTACCCATAATTCTGTATACACCTAGAGAAACTTGGTTCTAGTTTGAAAATTTTCTGGATTGTATTTAATGTGTAGTTTAGTCGATTTTACATCTAAACTTAACTATATCCAGGGGAAAGTCGGATTATAACAAATTATGATTGTCCTTGCCGTGTAATGCCAAATAGAAATGGTGTGTGTTAGACCTTACAATAACTCTCGTTTAGTCTGATCTAAGCTTGTCAAGATTTGCTAGTTTATTACAACCTTAACTCTTTTTAAACAAGATGTGAAAGGGGACCTGTCACAAGAACACCTTAGTCTGTTGGCAAGCAATGAGAATTTTGATTAGGCCAATTTGATAGTTAAAATTCCTAAAGAGAGCTCCAATGAGATACTTGCATTTGTATGTCGTGGTAGAGACAACTGCTGCAATGGGATACTGACATATTTATCTTCCGCACCCTCAGATACAGCAAAGCAGAGCTCAACATAACTCTCTTTGAATATTTTTGAGTCAATAATGTTTAACATGAGTGTTTAGCTATTCACATTTGACATTTCGAGCCAATTATCTTTTTGTCATATAGGAATTATTTGAAGGTTTTAGTAGGTGAATAATTTGCTTGCAGTGGCTAGAATTGGAGGTAGAGTGATTAATTTTGAGGAATGAAGTGCATTTCATAGACATATCACCCCCTCCCCACTTTCTTTTCTTTCTGACAAGTCATGTGTACATACACTTAGTTCTCTGAGTATGACATAACATTACCATTTTTAAATGAAAGAAAAAGTCGAAAACAACCTACTCCCCTCAGTGTGACAAAAGGGAGCGTCTTTCTGTATATGTTTAGTGTGACCTTAGAGAGTGAAAATGTACATTTTTGGCTTAGCATATATTGTCAATAATGGCTGTAGAGGTTTTGCTTCCGTGCACTCAGAAAGACGTCTGTTTCTTATAATAAATGCCTAGGCAGCTATTCGCAATCCATCACTAAGATTTTCAAGTCCTTATCAAAAAAAAAAGATAAAGAATTTCAAGGAAAAGGAGGATGCTGATGTTAAATATACCTAGCTTGTATTGCATGATGACCACTTGTAAACTGGTATCTCAAGCTTCTGTGCTACTCTTATCCACAATGTTGAAATTCCGTCTGTGTTTTTGGTCACTCCCAGTAAACTTTTCTTTGCTTTTTGTTGATAGGTGATTCTGTGTAAAAGATTAAGATAT-GGTTTCAAAAGACCGTAATAAACCTA-CTGGATCTCCAAAAGTACATGTTGGGGAGATAGATACAAGTGCACCATTTCAGTCTGTCAAAGATGCTGTTAAC-TTGTTTGGGGAAGGTGCATTCTCAGGGGAAAAACCTGCAATCAGGAAG</genome_strand>
        <mrna_strand>TTTCAACATACACAGCTTTTCTTTTTTTCTTTAGCTTTTTGTAAAACTTTCAAATCATCTCTTAATTCAAGATTCCTTGTCTTTACTGTTTGAA--TTTTTTCTTTGTTTTTGCTTATTGAAACTACCCATATCTCAATTTTTCCTCTTTTCATAGTTTCACTAACTAAATAGTGTTTTCCCCTTCAAAGGAATTGTCTTTTCTCTTCTTTTATACTTTGCTATTGAGGGTTTAGATAAAAAAAAAAAAGATTGTCTTTTGAGTGTTTGGGGCAGTTTGTTTTTGCTGTTTGGTTTGTGGGTTTGTGTTGATTAGTTGAAAGATTGACTTTTTTTTGAAGATTTTTGGTCAACCACTTTTGCTTATCTCTGAGAATTTGCTGCTTTGTATCAACCCTTTTGGCCTTTGGGAGTTAAAAGATTTGATGGTTTCTAGGGTTTATGGATGATTAGGGGCTTTTCATCATTTAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTCTGTGTAAAAGATTAAGATATGGGTTTCAAAAGACCCGTATAAACCTANCTGGATCTCCAAAAGTACATGTTGGGGAGATAGATACAAGTGCACCATTTCAGTCTGTCAAAGATGCTGTTAACTTTGTTTGGGGAGGGTGCATTCTCAGGGGAAAAACCTGNCATCAGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E304343" ref_strand="+" ref_description="SGN-E304343 [cLEX-12-P11]">
      <seq>agggacggaatcacttgcagggggtctgcatgtcaagctccgtaaagccaaatccgagcttgaagtagcagttgcagaagaagccaaagcaagaggtgcttctgaagaaatgatctctactctccaccagctgatcttggagactgaaaacgcatagcttgaagctgaagagatgaaaatgcaagcagaagagttaaagaaagaagctgaagccgctagaatggcgcttgaagatgcagaaaagaagcttaaagtggcgatggaagaagctgaagaagcaaaatcagctgaagctgaggctcgtgatcaaattaagattttatctgaaaaaaccacagctgcacgatcctgaacttgtgagtctggtgctcgtattactttatcaagagacgagtttgactcattgagccgtaaagttgaagaactcgataatttagcagaaataagagtgggagctgcaatggctcaggtagaggccgtgaaagcaagtgagaatgaggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="55974" stop="57075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56274" g_stop="56775" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E304343" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56274" e_stop="56775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGACGGAATCACTTGCAGGGGGTCTGCATGTCAAGCTCCGTAAAGCCAAATCCGAGCTTGAAGTAGCAGTTGCAGAAGAAGCCAAAGCAAGAGGTGCTTCTGAAGAAATGATCTCTACTCTCCACCAGCTGATCTTGGAGACTGAAAACGCAAAGCTTGAAGCTGAAGAGATGAAAATGCAAGCAGAAGAGTTAAAGAAAGAAGCTGAAGCCGCTAGAATGGCGCTTGAAGATGCAGAAAAGAAGCTTAAAGTGGCGATGGAAGAAGCTGAAGAAGCAAAATCAGCTGAGGCTGAGGCTCGTGATCAAATTAAGATTTTATCTGAAAAAACCACAGCTGCACGATCCTCAACTTCTGAGTCTGGTGCTCGTATTACTTTATCAAGAGACGAGTTTGACTCATTGAGCCGTAAAGTTGAAGAACTTGATAATTTAGCAGAAATAAGAGTGGGAGCTGCAATGGCTCAGGTAGAGGCCGTGAAAGCAAGTGAGAATGAGGCC</genome_strand>
        <mrna_strand>AGGGACGGAATCACTTGCAGGGGGTCTGCATGTCAAGCTCCGTAAAGCCAAATCCGAGCTTGAAGTAGCAGTTGCAGAAGAAGCCAAAGCAAGAGGTGCTTCTGAAGAAATGATCTCTACTCTCCACCAGCTGATCTTGGAGACTGAAAACGCATAGCTTGAAGCTGAAGAGATGAAAATGCAAGCAGAAGAGTTAAAGAAAGAAGCTGAAGCCGCTAGAATGGCGCTTGAAGATGCAGAAAAGAAGCTTAAAGTGGCGATGGAAGAAGCTGAAGAAGCAAAATCAGCTGAAGCTGAGGCTCGTGATCAAATTAAGATTTTATCTGAAAAAACCACAGCTGCACGATCCTGAACTTGTGAGTCTGGTGCTCGTATTACTTTATCAAGAGACGAGTTTGACTCATTGAGCCGTAAAGTTGAAGAACTCGATAATTTAGCAGAAATAAGAGTGGGAGCTGCAATGGCTCAGGTAGAGGCCGTGAAAGCAAGTGAGAATGAGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E357576" ref_strand="+" ref_description="SGN-E357576 [cTOS-23-J22]">
      <seq>aagagacgagtttgactcattgagccgtaaagttgaagaacttgataatttagcagaaataagagtgggagctgcaatggctcaggtagaggccgtgaaagcaagtgagaatgaggccctcaagaagttggagtcaactcaaaaggagattaatgatataaaaaccgctactcaggaagccttgaagaaggcagagatggcagaagctgccaagaaggccgtagaaggggagcttagaaggtggcgagaacgtgagcaaaagaaggcagctgaggcagcttctcgtattcttgctgaaacacatatgaactacagatcttctcctcaaagttacacagttcagaaggagaaaccatctgagaaattcatggaatcacatgtaaagatgcactcacccgttgaaaccaagaagcaaaacacacaagagaacataatggaaatgcgcaagttgcagaaagcaaagacatcagtgtcaaagaagaaagtactgatgcctagtatcagtggcattttccacaagaagaaaaaccaagtagagggagattctccatcatatctgcctggagagaaacctgtttggtaacattttgtgcaaaatatttgtggtggagaggaactggtctctatgccatggattgtgtgtatatctgaaacctgtggagcagcgattttctttcccctttcacttttggtatttattgtgtgtctgcaacttcttangagtatatacatttgtctcctataataatacatgcttacggnactcgtctattccaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="56358" stop="57734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56658" g_stop="57441" g_length="784"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="783" r_length="783" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E357576" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56658" e_stop="57441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGACGAGTTTGACTCATTGAGCCGTAAAGTTGAAGAACTTGATAATTTAGCAGAAATAAGAGTGGGAGCTGCAATGGCTCAGGTAGAGGCCGTGAAAGCAAGTGAGAATGAGGCCCTCAAGAAGTTGGAGTCAACTCAAAAGGAGATTAATGATATAAAAACCGCTACTCAGGAAGCCTTGAAGAAGGCAGAGATGGCAGAAGCTGCCAAGAAGGCCGTAGAAGGGGAGCTTAGAAGGTGGCGAGAACGTGAGCAAAAGAAGGCAGCTGAGGCAGCTTCTCGTATTCTTGCTGAAACACATATGAACTACAGATCTTCTCCTCAAAGTTACACAGTTCAGAAGGAGAAACCATCTGAGAAATTCATGGAATCACATGTAAAGATGCACTCACCCGTTGAAACCAAGAAGCAAAACACACAAGAGAACATAATGGAAATGCGCAAGTTGCAGAAAGCAAAGACATCAGTGTCAAAGAAGAAAGTACTGATGCCTAGTATCAGTGGCATTTTCCACAAGAAGAAAAACCAAGTAGAGGGAGATTCTCCATCATATCTGCCTGGAGAGAAACCTGTTTGGTAACATTTTGTGCAAAATATTTGTGGTGGAGAGGAACTGGTCTCTATGCCATGGATTGTGTGTATATCTGAAACCTGTGGAGCAGCGATTTTCTTTCCCCTTTCACTTTTGGTATTTATTGTGTGTCTGCAACTTCTTAGAGTTATATACATTTGTCTCCTATAATAATAACATGCTTACGGGACTCGTCTATTCCATTTGGAG</genome_strand>
        <mrna_strand>AAGAGACGAGTTTGACTCATTGAGCCGTAAAGTTGAAGAACTTGATAATTTAGCAGAAATAAGAGTGGGAGCTGCAATGGCTCAGGTAGAGGCCGTGAAAGCAAGTGAGAATGAGGCCCTCAAGAAGTTGGAGTCAACTCAAAAGGAGATTAATGATATAAAAACCGCTACTCAGGAAGCCTTGAAGAAGGCAGAGATGGCAGAAGCTGCCAAGAAGGCCGTAGAAGGGGAGCTTAGAAGGTGGCGAGAACGTGAGCAAAAGAAGGCAGCTGAGGCAGCTTCTCGTATTCTTGCTGAAACACATATGAACTACAGATCTTCTCCTCAAAGTTACACAGTTCAGAAGGAGAAACCATCTGAGAAATTCATGGAATCACATGTAAAGATGCACTCACCCGTTGAAACCAAGAAGCAAAACACACAAGAGAACATAATGGAAATGCGCAAGTTGCAGAAAGCAAAGACATCAGTGTCAAAGAAGAAAGTACTGATGCCTAGTATCAGTGGCATTTTCCACAAGAAGAAAAACCAAGTAGAGGGAGATTCTCCATCATATCTGCCTGGAGAGAAACCTGTTTGGTAACATTTTGTGCAAAATATTTGTGGTGGAGAGGAACTGGTCTCTATGCCATGGATTGTGTGTATATCTGAAACCTGTGGAGCAGCGATTTTCTTTCCCCTTTCACTTTTGGTATTTATTGTGTGTCTGCAACTTCTTANGAGTATATACATTTGTCTCCTATAATAAT-ACATGCTTACGGNACTCGTCTATTCCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E287831" ref_strand="+" ref_description="SGN-E287831 [cLES-19-N17]">
      <seq>tcaaaaggagattaatgatataaaaaccgctactcaggaagccttgaagaaggcagagatgggagaggctgccaagagggccgtagaaggggagcttagaaggtggcgagaacgtgagcaaaagaaggcagctgaggcagcttctcgtattcttgctgaaacacatatgaactacagatcttctcctcaaagttacacagttcagaaggagaaaccatctgagaaattcatggaatcacatgtaaagatgcactcacccgttgaaaccaagaagcaaaacacacaagagaacataatggaaatgcgcaagttgcagaaagcaaagacatcagtgtcaaagaagaaagtactgatgcctagtatcagtggcattttccacaagaagaaaaaccaagtagagggagattctccatcatatctgcctggagagaaacctgtttggtaacattttgtgcaaaatatttgtggtggagaggaactggtctctatgccatggattgtgtgtatatctgaaacctgtggagcagcgattttctttcccctttcacttttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="56496" stop="57650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56796" g_stop="57350" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E287831" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56796" e_stop="57350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAGGAGATTAATGATATAAAAACCGCTACTCAGGAAGCCTTGAAGAAGGCAGAGATGGCAGAAGCTGCCAAGAAGGCCGTAGAAGGGGAGCTTAGAAGGTGGCGAGAACGTGAGCAAAAGAAGGCAGCTGAGGCAGCTTCTCGTATTCTTGCTGAAACACATATGAACTACAGATCTTCTCCTCAAAGTTACACAGTTCAGAAGGAGAAACCATCTGAGAAATTCATGGAATCACATGTAAAGATGCACTCACCCGTTGAAACCAAGAAGCAAAACACACAAGAGAACATAATGGAAATGCGCAAGTTGCAGAAAGCAAAGACATCAGTGTCAAAGAAGAAAGTACTGATGCCTAGTATCAGTGGCATTTTCCACAAGAAGAAAAACCAAGTAGAGGGAGATTCTCCATCATATCTGCCTGGAGAGAAACCTGTTTGGTAACATTTTGTGCAAAATATTTGTGGTGGAGAGGAACTGGTCTCTATGCCATGGATTGTGTGTATATCTGAAACCTGTGGAGCAGCGATTTTCTTTCCCCTTTCACTTTTGGT</genome_strand>
        <mrna_strand>TCAAAAGGAGATTAATGATATAAAAACCGCTACTCAGGAAGCCTTGAAGAAGGCAGAGATGGGAGAGGCTGCCAAGAGGGCCGTAGAAGGGGAGCTTAGAAGGTGGCGAGAACGTGAGCAAAAGAAGGCAGCTGAGGCAGCTTCTCGTATTCTTGCTGAAACACATATGAACTACAGATCTTCTCCTCAAAGTTACACAGTTCAGAAGGAGAAACCATCTGAGAAATTCATGGAATCACATGTAAAGATGCACTCACCCGTTGAAACCAAGAAGCAAAACACACAAGAGAACATAATGGAAATGCGCAAGTTGCAGAAAGCAAAGACATCAGTGTCAAAGAAGAAAGTACTGATGCCTAGTATCAGTGGCATTTTCCACAAGAAGAAAAACCAAGTAGAGGGAGATTCTCCATCATATCTGCCTGGAGAGAAACCTGTTTGGTAACATTTTGTGCAAAATATTTGTGGTGGAGAGGAACTGGTCTCTATGCCATGGATTGTGTGTATATCTGAAACCTGTGGAGCAGCGATTTTCTTTCCCCTTTCACTTTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E228111" ref_strand="+" ref_description="SGN-E228111 [cLED-2-P5]">
      <seq>tgccaagaaggccgtagaaggggagcttagaaggtggcgagaacgtgagcaaaagaaggcagctgaggcagcttctcgtattcttgctgaaacacatatgaactacagatcttctcctcaaagttacacagttcagaaggagaaaccatctgagaaattcatggaatcacatgtaaagatgcactcacccgttgaaaccaagaagcaaaacacacaagagaacataatggaaatgcgcaagttgcagaaagcaaagacatcagtgtcaaagaagaaagtactgatgcctagtatcagtggcattttccacaagaagaaaaaccaagtagagggagattctncatcatatctgcctggagagaaacctgtttggtaacattttgtgcaaaatatttgtggtggagaggaactggtctctatgccatggattgtgtgtatatctgaaacctgtggagcagcgattttctttcccctttcacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="56565" stop="57646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="57346" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E228111" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="57346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCAAGAAGGCCGTAGAAGGGGAGCTTAGAAGGTGGCGAGAACGTGAGCAAAAGAAGGCAGCTGAGGCAGCTTCTCGTATTCTTGCTGAAACACATATGAACTACAGATCTTCTCCTCAAAGTTACACAGTTCAGAAGGAGAAACCATCTGAGAAATTCATGGAATCACATGTAAAGATGCACTCACCCGTTGAAACCAAGAAGCAAAACACACAAGAGAACATAATGGAAATGCGCAAGTTGCAGAAAGCAAAGACATCAGTGTCAAAGAAGAAAGTACTGATGCCTAGTATCAGTGGCATTTTCCACAAGAAGAAAAACCAAGTAGAGGGAGATTCTCCATCATATCTGCCTGGAGAGAAACCTGTTTGGTAACATTTTGTGCAAAATATTTGTGGTGGAGAGGAACTGGTCTCTATGCCATGGATTGTGTGTATATCTGAAACCTGTGGAGCAGCGATTTTCTTTCCCCTTTCACTTT</genome_strand>
        <mrna_strand>TGCCAAGAAGGCCGTAGAAGGGGAGCTTAGAAGGTGGCGAGAACGTGAGCAAAAGAAGGCAGCTGAGGCAGCTTCTCGTATTCTTGCTGAAACACATATGAACTACAGATCTTCTCCTCAAAGTTACACAGTTCAGAAGGAGAAACCATCTGAGAAATTCATGGAATCACATGTAAAGATGCACTCACCCGTTGAAACCAAGAAGCAAAACACACAAGAGAACATAATGGAAATGCGCAAGTTGCAGAAAGCAAAGACATCAGTGTCAAAGAAGAAAGTACTGATGCCTAGTATCAGTGGCATTTTCCACAAGAAGAAAAACCAAGTAGAGGGAGATTCTNCATCATATCTGCCTGGAGAGAAACCTGTTTGGTAACATTTTGTGCAAAATATTTGTGGTGGAGAGGAACTGGTCTCTATGCCATGGATTGTGTGTATATCTGAAACCTGTGGAGCAGCGATTTTCTTTCCCCTTTCACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E214183" ref_strand="+" ref_description="SGN-E214183 [cLEC-77-I9]">
      <seq>gaggaacttatgagtcaaaaagcttcaaactcaccgttaatggcgaacagagacgatttcataaaccctaacacttcttctcctgttactgtttccgatgccgacagcttccttctagattcttctcagatcggtagcgcttctggaagcttccagaacgagggttttctctccggtgctgatggcggcgccgccgccgctgctgatgctgagtttggtttctcccgtcctgattttcgccagacgcagcttgttggtactgttgatttctatgaacgccacgtgttcctttgctataagaatcctcaagtttggcctcctcgtattgaggctgctgagtttgatcgattgcctaggcttcttgctgctgctcttaccgctcggaagaatgatgttaagaaacagactcggttgacaatatgtgaagggcatgatggaactgagacatcgaatggggatgtgttgatctttccggacatgatcagatacaggagattgactcattttgatgttgacacatttgttgaggaagtgcttgtgaaggatggtgaatggttgcctgnaaatcctgaagctctgactggatggtacatatttgtgtgttgtcatgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="62863" stop="65388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63163" g_stop="63566" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63567" i_stop="64794" i_length="1228">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64795" g_stop="64880" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="491" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64881" i_stop="64966" i_length="86">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64967" g_stop="65088" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="613" r_length="122" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E214183" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63163" e_stop="63566"/>
          <exon e_start="64795" e_stop="64880"/>
          <exon e_start="64967" e_stop="65088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GA-GAACTTATGAGTCAAAAAGCTTCAAACTCACCGTTAATGGCGAACAGAGACGATTTCATAAACCCTAACACTTCTTCTCCTGTTACTGTTTCCGATGCCGACAGCTTCCTTCTAGATTCTTCTCAGATCGGTAGCGCTTCTGGAAGCTTCCAGAACGAGGGTTTTCTCTCCGGTGCTGATGGCGGCGCCGCCGCCGCTGCTGATGCTGAGTTTGGTTTCTCCCGTCCTGATTTTCGCCAGACGCAGCTTGTTGGTACTGTTGATTTCTATGAACGCCACGTGTTCCTTTGCTATAAGAATCCTCAAGTTTGGCCTCCTCGTATTGAGGCTGCTGAGTTTGATCGATTGCCTAGGCTTCTTGCTGCTGCTCTTACCGCTCGGAAGAATGATGTTAAGAAACAGGTTTATTCTGTTGTCATTTTTGAATTTTGTTATCTTTGCAAATCTTTGACTGCTGCTTTTGAAATGTTGAGTTATCCTGCATTGTAGAACTTTTATTAGCTTCTGGAAATGCTCATTGTTGTTGTTGCTAACCTGTTTACTTGTTTTCATTTTGTCGCACGGGGAGGGTCTTTCGGAAACAAGTCTCTGCCCCATAAAGGTAGGGGTAAGGTCTATGTATTCTCTCAAGACACCACTTGTGGGCATTACACGGCGTATGTGTTCCGTGTCATCTGTTAATAAATATCATTAATAGGCATTAAGCAGATGCAAAGTGTTACAAAATCAGAAAGTAATGTTAGCTTTAGAACAACAAAGTTGCTAAATTAGGGACAGGGAGCTAAAAGATTAAATTTTTTATTGGAGTTTGACCAATAAAAGATTAAGTCTTTTAAACCGTCTACAATCCTCTTATTCGCACTCCTACAAACTTGAACGAGGACAGTCAGACACTCAGACTAACCCCAAAGAAGAACTCTCATTAGAAAAAGCGGTCCCTTTCTTGCTTGATTCATCTTTCATCTCAGTGTCTTATCCGGATTGAATGTATGCTATCCCCCTAATGGACTAAGGGTTTTGATCGAATAATCCTGAACTTAAATTCTAGATTTCTCTTAATTTTACTGAAAGGAGAATTTGTATGAAATGGGCCTGATTAGAGTCAAATGAATACGAAGTATTTGTACAGCGAACCTTAATGTGCTTAAGGTGTGATTGGTTTGATTCAGCTTACGAGTTCAAACTTCATTTATCTAAGCTGATGCTTTCTTTCGAAAGAGGGACGTGCCTTACTGTTTTCTGTTGCTACTTTGGTATGTGTGGACCAAGTTTTTCCTGCATGTAGTGATAGAACAAAGTGCAAACTGCAAAGTTAGGTCCTACATTCTGTTCTCATAGACTTTTTGCGTTTGCAAATTTTTTTCTTTCTTATTCCTGACTAACATTCTTCCCAAGTTTCAAATTTTTCGATCCACCTCTATGATTAAATGATCAGTAACTTGCCAATGTCTAATCTTTATAGCTTTGGCTCAAGTTGAAGAGTAAATTGTTCTCGTTTGATCTCATTCTGATTGGGCTTGTGTAGTTTTTACAAATTCCCTTTCTAAAGCAAATTGCTTAGTTGGTTATGTTTTCTTTATGATCCCAGTAATATCTGTAGTGATTTACCTTCAACTTTTCTTTCGTCCAGACTCGGTTGACAATATGTGAAGGGCATGATGGAACTGAGACATCGAATGGGGATGTGTTGATCTTTCCGGACATGATCAGATACAGGTTTAAACGATGCTATACTATTCTAGTGCATCTGCAGCAGTTGATTACATATCTATTAAATGACATTGAATTTACCTATGGTGCAGGAGATTGACTCATTTTGATGTTGACACATTTGTTGAGGAGGTGCTTGTGAAGGATGGTGAATGGTTGCCTGGAAATCCTGAAGCTCTGACTGGATGGTACATATTTGTGTGTTGTCATGGTT</genome_strand>
        <mrna_strand>GAGGAACTTATGAGTCAAAAAGCTTCAAACTCACCGTTAATGGCGAACAGAGACGATTTCATAAACCCTAACACTTCTTCTCCTGTTACTGTTTCCGATGCCGACAGCTTCCTTCTAGATTCTTCTCAGATCGGTAGCGCTTCTGGAAGCTTCCAGAACGAGGGTTTTCTCTCCGGTGCTGATGGCGGCGCCGCCGCCGCTGCTGATGCTGAGTTTGGTTTCTCCCGTCCTGATTTTCGCCAGACGCAGCTTGTTGGTACTGTTGATTTCTATGAACGCCACGTGTTCCTTTGCTATAAGAATCCTCAAGTTTGGCCTCCTCGTATTGAGGCTGCTGAGTTTGATCGATTGCCTAGGCTTCTTGCTGCTGCTCTTACCGCTCGGAAGAATGATGTTAAGAAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGGTTGACAATATGTGAAGGGCATGATGGAACTGAGACATCGAATGGGGATGTGTTGATCTTTCCGGACATGATCAGATACAG......................................................................................GAGATTGACTCATTTTGATGTTGACACATTTGTTGAGGAAGTGCTTGTGAAGGATGGTGAATGGTTGCCTGNAAATCCTGAAGCTCTGACTGGATGGTACATATTTGTGTGTTGTCATGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E207600" ref_strand="+" ref_description="SGN-E207600 [cLEC-32-A18]">
      <seq>gaggaacttatgagtcaaaaagcttcaaactcaccgttaatggcgaacagagacgatttcataaaccctaacacttcttctcctgttactgtttccgatgccgacagcttccttctagattcttctcagatcggtagcgcttctggaagcttccagaacgagggttttctctccggtgctgatggcggcgccgccgccgctgctgatgctgagtttggtttctcccgtcctgattttcgccagacgcagcttgttggtactgttgatttctatgaacgccacgtgttcctttgctataagaatcctcaagtttggcctcctcgtattgaggctgctgagtttgatcgattgcctaggcttcttgctgctgctcttaccgctcggaagaatgatgttaagaaacagactcggttgacaatatgtgaagggcatgatggaactgagacatcgaatggggatgtgttgatctttccggacatgatcagatacaggagattgactcattttgatgttgacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="62863" stop="65294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63163" g_stop="63566" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63567" i_stop="64794" i_length="1228">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64795" g_stop="64880" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="491" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64881" i_stop="64966" i_length="86">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64967" g_stop="64994" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="519" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E207600" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63163" e_stop="63566"/>
          <exon e_start="64795" e_stop="64880"/>
          <exon e_start="64967" e_stop="64994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GA-GAACTTATGAGTCAAAAAGCTTCAAACTCACCGTTAATGGCGAACAGAGACGATTTCATAAACCCTAACACTTCTTCTCCTGTTACTGTTTCCGATGCCGACAGCTTCCTTCTAGATTCTTCTCAGATCGGTAGCGCTTCTGGAAGCTTCCAGAACGAGGGTTTTCTCTCCGGTGCTGATGGCGGCGCCGCCGCCGCTGCTGATGCTGAGTTTGGTTTCTCCCGTCCTGATTTTCGCCAGACGCAGCTTGTTGGTACTGTTGATTTCTATGAACGCCACGTGTTCCTTTGCTATAAGAATCCTCAAGTTTGGCCTCCTCGTATTGAGGCTGCTGAGTTTGATCGATTGCCTAGGCTTCTTGCTGCTGCTCTTACCGCTCGGAAGAATGATGTTAAGAAACAGGTTTATTCTGTTGTCATTTTTGAATTTTGTTATCTTTGCAAATCTTTGACTGCTGCTTTTGAAATGTTGAGTTATCCTGCATTGTAGAACTTTTATTAGCTTCTGGAAATGCTCATTGTTGTTGTTGCTAACCTGTTTACTTGTTTTCATTTTGTCGCACGGGGAGGGTCTTTCGGAAACAAGTCTCTGCCCCATAAAGGTAGGGGTAAGGTCTATGTATTCTCTCAAGACACCACTTGTGGGCATTACACGGCGTATGTGTTCCGTGTCATCTGTTAATAAATATCATTAATAGGCATTAAGCAGATGCAAAGTGTTACAAAATCAGAAAGTAATGTTAGCTTTAGAACAACAAAGTTGCTAAATTAGGGACAGGGAGCTAAAAGATTAAATTTTTTATTGGAGTTTGACCAATAAAAGATTAAGTCTTTTAAACCGTCTACAATCCTCTTATTCGCACTCCTACAAACTTGAACGAGGACAGTCAGACACTCAGACTAACCCCAAAGAAGAACTCTCATTAGAAAAAGCGGTCCCTTTCTTGCTTGATTCATCTTTCATCTCAGTGTCTTATCCGGATTGAATGTATGCTATCCCCCTAATGGACTAAGGGTTTTGATCGAATAATCCTGAACTTAAATTCTAGATTTCTCTTAATTTTACTGAAAGGAGAATTTGTATGAAATGGGCCTGATTAGAGTCAAATGAATACGAAGTATTTGTACAGCGAACCTTAATGTGCTTAAGGTGTGATTGGTTTGATTCAGCTTACGAGTTCAAACTTCATTTATCTAAGCTGATGCTTTCTTTCGAAAGAGGGACGTGCCTTACTGTTTTCTGTTGCTACTTTGGTATGTGTGGACCAAGTTTTTCCTGCATGTAGTGATAGAACAAAGTGCAAACTGCAAAGTTAGGTCCTACATTCTGTTCTCATAGACTTTTTGCGTTTGCAAATTTTTTTCTTTCTTATTCCTGACTAACATTCTTCCCAAGTTTCAAATTTTTCGATCCACCTCTATGATTAAATGATCAGTAACTTGCCAATGTCTAATCTTTATAGCTTTGGCTCAAGTTGAAGAGTAAATTGTTCTCGTTTGATCTCATTCTGATTGGGCTTGTGTAGTTTTTACAAATTCCCTTTCTAAAGCAAATTGCTTAGTTGGTTATGTTTTCTTTATGATCCCAGTAATATCTGTAGTGATTTACCTTCAACTTTTCTTTCGTCCAGACTCGGTTGACAATATGTGAAGGGCATGATGGAACTGAGACATCGAATGGGGATGTGTTGATCTTTCCGGACATGATCAGATACAGGTTTAAACGATGCTATACTATTCTAGTGCATCTGCAGCAGTTGATTACATATCTATTAAATGACATTGAATTTACCTATGGTGCAGGAGATTGACTCATTTTGATGTTGACACA</genome_strand>
        <mrna_strand>GAGGAACTTATGAGTCAAAAAGCTTCAAACTCACCGTTAATGGCGAACAGAGACGATTTCATAAACCCTAACACTTCTTCTCCTGTTACTGTTTCCGATGCCGACAGCTTCCTTCTAGATTCTTCTCAGATCGGTAGCGCTTCTGGAAGCTTCCAGAACGAGGGTTTTCTCTCCGGTGCTGATGGCGGCGCCGCCGCCGCTGCTGATGCTGAGTTTGGTTTCTCCCGTCCTGATTTTCGCCAGACGCAGCTTGTTGGTACTGTTGATTTCTATGAACGCCACGTGTTCCTTTGCTATAAGAATCCTCAAGTTTGGCCTCCTCGTATTGAGGCTGCTGAGTTTGATCGATTGCCTAGGCTTCTTGCTGCTGCTCTTACCGCTCGGAAGAATGATGTTAAGAAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGGTTGACAATATGTGAAGGGCATGATGGAACTGAGACATCGAATGGGGATGTGTTGATCTTTCCGGACATGATCAGATACAG......................................................................................GAGATTGACTCATTTTGATGTTGACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E341259" ref_strand="+" ref_description="SGN-E341259 [cTOE-22-M24]">
      <seq>tcaaaaagcttcaaactcaccgttaatggcgaacagagacgatttcataaaccctaacacttcttctcctgttactgtttccgatgccgacagcttccttctagattcttctcagatcggtagcgcttctggaagcttccagaacgagggttttctctccggtgctgatggcggcgccgccgccgctgctgatgctgagtttggtttctcccgtcctgattttcgccagacgcagcttgttggtactgttgatttctatgaacgccacgtgttcctttgctataagaatcctcaagtttggcctcctcgtattgaggctgctgagtttgatcgattgcctaggcttcttgctgctgctcttaccgctcggaagaatgatgttaagaaacagactcggttgacaatatgtgaagggcatgatggaactgagacatcgaatggggatgtgttgatctttccggacatgatcagata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="62876" stop="65177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63176" g_stop="63566" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63567" i_stop="64794" i_length="1228">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64795" g_stop="64877" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="474" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E341259" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63176" e_stop="63566"/>
          <exon e_start="64795" e_stop="64877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAAGCTTCAAACTCACCGTTAATGGCGAACAGAGACGATTTCATAAACCCTAACACTTCTTCTCCTGTTACTGTTTCCGATGCCGACAGCTTCCTTCTAGATTCTTCTCAGATCGGTAGCGCTTCTGGAAGCTTCCAGAACGAGGGTTTTCTCTCCGGTGCTGATGGCGGCGCCGCCGCCGCTGCTGATGCTGAGTTTGGTTTCTCCCGTCCTGATTTTCGCCAGACGCAGCTTGTTGGTACTGTTGATTTCTATGAACGCCACGTGTTCCTTTGCTATAAGAATCCTCAAGTTTGGCCTCCTCGTATTGAGGCTGCTGAGTTTGATCGATTGCCTAGGCTTCTTGCTGCTGCTCTTACCGCTCGGAAGAATGATGTTAAGAAACAGGTTTATTCTGTTGTCATTTTTGAATTTTGTTATCTTTGCAAATCTTTGACTGCTGCTTTTGAAATGTTGAGTTATCCTGCATTGTAGAACTTTTATTAGCTTCTGGAAATGCTCATTGTTGTTGTTGCTAACCTGTTTACTTGTTTTCATTTTGTCGCACGGGGAGGGTCTTTCGGAAACAAGTCTCTGCCCCATAAAGGTAGGGGTAAGGTCTATGTATTCTCTCAAGACACCACTTGTGGGCATTACACGGCGTATGTGTTCCGTGTCATCTGTTAATAAATATCATTAATAGGCATTAAGCAGATGCAAAGTGTTACAAAATCAGAAAGTAATGTTAGCTTTAGAACAACAAAGTTGCTAAATTAGGGACAGGGAGCTAAAAGATTAAATTTTTTATTGGAGTTTGACCAATAAAAGATTAAGTCTTTTAAACCGTCTACAATCCTCTTATTCGCACTCCTACAAACTTGAACGAGGACAGTCAGACACTCAGACTAACCCCAAAGAAGAACTCTCATTAGAAAAAGCGGTCCCTTTCTTGCTTGATTCATCTTTCATCTCAGTGTCTTATCCGGATTGAATGTATGCTATCCCCCTAATGGACTAAGGGTTTTGATCGAATAATCCTGAACTTAAATTCTAGATTTCTCTTAATTTTACTGAAAGGAGAATTTGTATGAAATGGGCCTGATTAGAGTCAAATGAATACGAAGTATTTGTACAGCGAACCTTAATGTGCTTAAGGTGTGATTGGTTTGATTCAGCTTACGAGTTCAAACTTCATTTATCTAAGCTGATGCTTTCTTTCGAAAGAGGGACGTGCCTTACTGTTTTCTGTTGCTACTTTGGTATGTGTGGACCAAGTTTTTCCTGCATGTAGTGATAGAACAAAGTGCAAACTGCAAAGTTAGGTCCTACATTCTGTTCTCATAGACTTTTTGCGTTTGCAAATTTTTTTCTTTCTTATTCCTGACTAACATTCTTCCCAAGTTTCAAATTTTTCGATCCACCTCTATGATTAAATGATCAGTAACTTGCCAATGTCTAATCTTTATAGCTTTGGCTCAAGTTGAAGAGTAAATTGTTCTCGTTTGATCTCATTCTGATTGGGCTTGTGTAGTTTTTACAAATTCCCTTTCTAAAGCAAATTGCTTAGTTGGTTATGTTTTCTTTATGATCCCAGTAATATCTGTAGTGATTTACCTTCAACTTTTCTTTCGTCCAGACTCGGTTGACAATATGTGAAGGGCATGATGGAACTGAGACATCGAATGGGGATGTGTTGATCTTTCCGGACATGATCAGATA</genome_strand>
        <mrna_strand>TCAAAAAGCTTCAAACTCACCGTTAATGGCGAACAGAGACGATTTCATAAACCCTAACACTTCTTCTCCTGTTACTGTTTCCGATGCCGACAGCTTCCTTCTAGATTCTTCTCAGATCGGTAGCGCTTCTGGAAGCTTCCAGAACGAGGGTTTTCTCTCCGGTGCTGATGGCGGCGCCGCCGCCGCTGCTGATGCTGAGTTTGGTTTCTCCCGTCCTGATTTTCGCCAGACGCAGCTTGTTGGTACTGTTGATTTCTATGAACGCCACGTGTTCCTTTGCTATAAGAATCCTCAAGTTTGGCCTCCTCGTATTGAGGCTGCTGAGTTTGATCGATTGCCTAGGCTTCTTGCTGCTGCTCTTACCGCTCGGAAGAATGATGTTAAGAAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGGTTGACAATATGTGAAGGGCATGATGGAACTGAGACATCGAATGGGGATGTGTTGATCTTTCCGGACATGATCAGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E236043" ref_strand="+" ref_description="SGN-E236043 [cLED-16-H7]">
      <seq>ggcgaacagagacgatttcataaaccctaacactttttctcctgttactgtttccgatgccgacagcttccttctagattcttctcagatcggtagcgcttctggaagcttccagaacgagggttttctctccggtgctgatggcggcgccgccgccgctgctgatgctgagtttggtttctcccgtcctgattttcgccagacgcagcttgttggtactgttgatttctatgaacgccacgtgttcctttgctataagaatcctcaagtttggcctcctcgtattgaggctgctgagtttgatcgattgcctaggcttcttgctgctgctcttaccgctcggaagaatgatgttaagaaacagactcggttgacaatatgtgaagggcatgatggaactgagacatcgaatggggatgtgttgatctttccggacattgatcagatacaggagattgactcattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="62903" stop="65283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63203" g_stop="63566" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63567" i_stop="64794" i_length="1228">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64795" g_stop="64880" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="451" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64881" i_stop="64966" i_length="86">
            <donor d_prob="0.946" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64967" g_stop="64983" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="468" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E236043" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63203" e_stop="63566"/>
          <exon e_start="64795" e_stop="64880"/>
          <exon e_start="64967" e_stop="64983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGAACAGAGACGATTTCATAAACCCTAACACTTCTTCTCCTGTTACTGTTTCCGATGCCGACAGCTTCCTTCTAGATTCTTCTCAGATCGGTAGCGCTTCTGGAAGCTTCCAGAACGAGGGTTTTCTCTCCGGTGCTGATGGCGGCGCCGCCGCCGCTGCTGATGCTGAGTTTGGTTTCTCCCGTCCTGATTTTCGCCAGACGCAGCTTGTTGGTACTGTTGATTTCTATGAACGCCACGTGTTCCTTTGCTATAAGAATCCTCAAGTTTGGCCTCCTCGTATTGAGGCTGCTGAGTTTGATCGATTGCCTAGGCTTCTTGCTGCTGCTCTTACCGCTCGGAAGAATGATGTTAAGAAACAGGTTTATTCTGTTGTCATTTTTGAATTTTGTTATCTTTGCAAATCTTTGACTGCTGCTTTTGAAATGTTGAGTTATCCTGCATTGTAGAACTTTTATTAGCTTCTGGAAATGCTCATTGTTGTTGTTGCTAACCTGTTTACTTGTTTTCATTTTGTCGCACGGGGAGGGTCTTTCGGAAACAAGTCTCTGCCCCATAAAGGTAGGGGTAAGGTCTATGTATTCTCTCAAGACACCACTTGTGGGCATTACACGGCGTATGTGTTCCGTGTCATCTGTTAATAAATATCATTAATAGGCATTAAGCAGATGCAAAGTGTTACAAAATCAGAAAGTAATGTTAGCTTTAGAACAACAAAGTTGCTAAATTAGGGACAGGGAGCTAAAAGATTAAATTTTTTATTGGAGTTTGACCAATAAAAGATTAAGTCTTTTAAACCGTCTACAATCCTCTTATTCGCACTCCTACAAACTTGAACGAGGACAGTCAGACACTCAGACTAACCCCAAAGAAGAACTCTCATTAGAAAAAGCGGTCCCTTTCTTGCTTGATTCATCTTTCATCTCAGTGTCTTATCCGGATTGAATGTATGCTATCCCCCTAATGGACTAAGGGTTTTGATCGAATAATCCTGAACTTAAATTCTAGATTTCTCTTAATTTTACTGAAAGGAGAATTTGTATGAAATGGGCCTGATTAGAGTCAAATGAATACGAAGTATTTGTACAGCGAACCTTAATGTGCTTAAGGTGTGATTGGTTTGATTCAGCTTACGAGTTCAAACTTCATTTATCTAAGCTGATGCTTTCTTTCGAAAGAGGGACGTGCCTTACTGTTTTCTGTTGCTACTTTGGTATGTGTGGACCAAGTTTTTCCTGCATGTAGTGATAGAACAAAGTGCAAACTGCAAAGTTAGGTCCTACATTCTGTTCTCATAGACTTTTTGCGTTTGCAAATTTTTTTCTTTCTTATTCCTGACTAACATTCTTCCCAAGTTTCAAATTTTTCGATCCACCTCTATGATTAAATGATCAGTAACTTGCCAATGTCTAATCTTTATAGCTTTGGCTCAAGTTGAAGAGTAAATTGTTCTCGTTTGATCTCATTCTGATTGGGCTTGTGTAGTTTTTACAAATTCCCTTTCTAAAGCAAATTGCTTAGTTGGTTATGTTTTCTTTATGATCCCAGTAATATCTGTAGTGATTTACCTTCAACTTTTCTTTCGTCCAGACTCGGTTGACAATATGTGAAGGGCATGATGGAACTGAGACATCGAATGGGGATGTGTTGATCTTTCCGGACA-TGATCAGATACAGGTTTAAACGATGCTATACTATTCTAGTGCATCTGCAGCAGTTGATTACATATCTATTAAATGACATTGAATTTACCTATGGTGCAGGAGATTGACTCATTTTG</genome_strand>
        <mrna_strand>GGCGAACAGAGACGATTTCATAAACCCTAACACTTTTTCTCCTGTTACTGTTTCCGATGCCGACAGCTTCCTTCTAGATTCTTCTCAGATCGGTAGCGCTTCTGGAAGCTTCCAGAACGAGGGTTTTCTCTCCGGTGCTGATGGCGGCGCCGCCGCCGCTGCTGATGCTGAGTTTGGTTTCTCCCGTCCTGATTTTCGCCAGACGCAGCTTGTTGGTACTGTTGATTTCTATGAACGCCACGTGTTCCTTTGCTATAAGAATCCTCAAGTTTGGCCTCCTCGTATTGAGGCTGCTGAGTTTGATCGATTGCCTAGGCTTCTTGCTGCTGCTCTTACCGCTCGGAAGAATGATGTTAAGAAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGGTTGACAATATGTGAAGGGCATGATGGAACTGAGACATCGAATGGGGATGTGTTGATCTTTCCGGACATTGATCAGATACAG......................................................................................GAGATTGACTCATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E378907" ref_strand="+" ref_description="SGN-E378907 [TUS-1-M6]">
      <seq>cgaaacactcacaaggaagtctccggacactggtatggctatgttacacctgatgatgtaccacagttgcttgaacagcatgttgctaaaggagagattgttgattggttgtggaggggccagatggggctatctgaagatgaacagaaagcatcccaacaacataggctcagcatttatggtggaacagatgtggacagaggcaccataaactcaaatgatgttggtattcgcacatgtggatcccaattagagggtatgggctgttgccaggcaaatggaaatgtctcatgttgtcagaccactcaaccaccagttgatgcagacaatttcaatctcaaccaagagaacgctgagtttacaaccgaaaagaagagcagcttcaagagacaagtttctcgaagtagcagtggcaaagggactcgttctcgcaaggtgtgctcaatgcctacttggtacgagagctgggagcgtgaagatacgtatgcagttcttgctgttgttggtgctgccatatcagttgcctatgccttncactgctacagacagctgaagtaatattatttataaagaagttcacatttgatttcattgttggttaaaaacaattatgtgctttgtctaatgtaaatttangttattgcatgtgtgtaagtcacttgcaatgaagtctagaatttgatttacttggggggataacatttatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="64941" stop="66920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65241" g_stop="65272" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65273" i_stop="65385" i_length="113">
            <donor d_prob="0.965" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65386" g_stop="65469" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="116" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65470" i_stop="66028" i_length="559">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66029" g_stop="66620" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="708" r_length="592" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E378907" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65241" e_stop="65272"/>
          <exon e_start="65386" e_stop="65469"/>
          <exon e_start="66029" e_stop="66620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAACACTCACAAGGAAGTCTCCGGACACTGGTTAGGAAAAATCCTTTTGCCCCTTTTCTTTTGGAAATTGTTCTCTCAGTTGTAGGCAGTTGATGAAATTTACTTGGGTAGTTAATTATATGTTTGTTTTTGTCGTGCACTAGGTATGGCTATGTTACACCTGATGATGTACCACAGTTGCTTGAACAGCATGTTGCTAAAGGAGAGATTGTTGATTGGTTGTGGAGGTAAGTTCTCTCTCCTGTTGCTATTATAATCGCATCTTGAGAACTACGTCTCCGAGCTATATATCCCCGTGTAATTCTGGTCATGGAATAAATGAAACTTGCTTCTAGATAAATGTAACTCGTTTTTGAGCTATTATGTACTTGTCAGCTCTAAAACATTAGGAATGTTACATTAAAAATTGTGGTTAGGATGCAAGTTATGTATTGGCATTATTATGTCAATATTTGTTACCTCTTAAACGGCTTAAGTTCCATAACCCGTGCCGTGATCTTCCTATGGACCATAGCTTGTGTTTTTGGTGAATCAAAAATTTTAGATGTATTCAATGGTAACTCACTGCTTCGTGAAGTTCTGAGGGTTTAAGAACACATAATGTTAATTCAAGTTTACTCATTAATGTGATCTAAAGTACTAAAGGGGAAGTGTCCTGTAGCAACCATCCTAATTTTGTAGAGGTGAAAAATTGGGTTTTCAAGATTCATCTGTTAGCTAATCTATCTGCAGGTGCAGAAGGCGTTTTTGCATTTGTTAATCTAGAATACTAATGTCTTGTTTCAGGGGCCAGATGGGGCTATCTGAAGATGAACAGAAAGCATCCCAACAACATAGGCTCAGCATTTATGGTGGAACAGATGTGGACAGAGGCACCATAAACTCAAATGATGTTGGTATTCGCACATGTGGATCCCAATTAGAGGGTATGGGCTGTTGCCAGGCAAATGGAAATGTCTCATGTTGTCAGACCACTCAACCACCAGTTGATGCAGACAATTTCAATCTCAACCAAGAGAACGCTGAGTTTACAACCGAAAAGAAGAGCAGCTTCAAGAGACAAGTTTCTCGAAGTAGCAGTGGCAAAGGGACTCGTTCTCGCAAGGTGTGCTCAATGCCTACTTGGTACGAGAGCTGGGAGCGTGAAGATACGTATGCAGTTCTTGCTGTTGTTGGTGCTGCCATATCAGTTGCCTATGCCTTCAACTGCTACAGACAGCTGAAGTAATATTATTTATAAAGAAGTTCACATTTGATTTCATTGTTGGTTAAAAACAATTATGTGCTTTGTCTAATGTAAATTTAGGTTATTGCATGTGTGTAAGTCACTTGCAATGAAGTCTAGAATTTGATTTACTTGGGGGGATAACATTTATGC</genome_strand>
        <mrna_strand>CGAAACACTCACAAGGAAGTCTCCGGACACTG.................................................................................................................GTATGGCTATGTTACACCTGATGATGTACCACAGTTGCTTGAACAGCATGTTGCTAAAGGAGAGATTGTTGATTGGTTGTGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCAGATGGGGCTATCTGAAGATGAACAGAAAGCATCCCAACAACATAGGCTCAGCATTTATGGTGGAACAGATGTGGACAGAGGCACCATAAACTCAAATGATGTTGGTATTCGCACATGTGGATCCCAATTAGAGGGTATGGGCTGTTGCCAGGCAAATGGAAATGTCTCATGTTGTCAGACCACTCAACCACCAGTTGATGCAGACAATTTCAATCTCAACCAAGAGAACGCTGAGTTTACAACCGAAAAGAAGAGCAGCTTCAAGAGACAAGTTTCTCGAAGTAGCAGTGGCAAAGGGACTCGTTCTCGCAAGGTGTGCTCAATGCCTACTTGGTACGAGAGCTGGGAGCGTGAAGATACGTATGCAGTTCTTGCTGTTGTTGGTGCTGCCATATCAGTTGCCTATGCCTTNCACTGCTACAGACAGCTGAAGTAATATTATTTATAAAGAAGTTCACATTTGATTTCATTGTTGGTTAAAAACAATTATGTGCTTTGTCTAATGTAAATTTANGTTATTGCATGTGTGTAAGTCACTTGCAATGAAGTCTAGAATTTGATTTACTTGGGGGGATAACATTTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E201950" ref_strand="+" ref_description="SGN-E201950 [cLEC-7-O15]">
      <seq>cgaaacactcacacggaagtcttcggacactggtatggctatgttacacctgatgatgtaccacagctgcttgaacagcatgttgctaaaggagagattgatgattggttgacgaggggccagattgggctatctgaagatgaacagaaagcatcccaacaacataggctcagcatttatggtggaacagatgtggactgaggcgccataaactcaaatgatgtatggtattcgcacatgtggatcccaattagagggtatgggctagagctccgctaatggaaatgtataatgttggcagaccactcaaccaccagttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="65071" stop="66534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65241" g_stop="65272" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65273" i_stop="65385" i_length="113">
            <donor d_prob="0.965" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65386" g_stop="65469" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="116" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65470" i_stop="66028" i_length="559">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66029" g_stop="66234" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="323" r_length="207" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E201950" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65241" e_stop="65272"/>
          <exon e_start="65386" e_stop="65469"/>
          <exon e_start="66029" e_stop="66234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAACACTCACAAGGAAGTCTCCGGACACTGGTTAGGAAAAATCCTTTTGCCCCTTTTCTTTTGGAAATTGTTCTCTCAGTTGTAGGCAGTTGATGAAATTTACTTGGGTAGTTAATTATATGTTTGTTTTTGTCGTGCACTAGGTATGGCTATGTTACACCTGATGATGTACCACAGTTGCTTGAACAGCATGTTGCTAAAGGAGAGATTGTTGATTGGTTGTGGAGGTAAGTTCTCTCTCCTGTTGCTATTATAATCGCATCTTGAGAACTACGTCTCCGAGCTATATATCCCCGTGTAATTCTGGTCATGGAATAAATGAAACTTGCTTCTAGATAAATGTAACTCGTTTTTGAGCTATTATGTACTTGTCAGCTCTAAAACATTAGGAATGTTACATTAAAAATTGTGGTTAGGATGCAAGTTATGTATTGGCATTATTATGTCAATATTTGTTACCTCTTAAACGGCTTAAGTTCCATAACCCGTGCCGTGATCTTCCTATGGACCATAGCTTGTGTTTTTGGTGAATCAAAAATTTTAGATGTATTCAATGGTAACTCACTGCTTCGTGAAGTTCTGAGGGTTTAAGAACACATAATGTTAATTCAAGTTTACTCATTAATGTGATCTAAAGTACTAAAGGGGAAGTGTCCTGTAGCAACCATCCTAATTTTGTAGAGGTGAAAAATTGGGTTTTCAAGATTCATCTGTTAGCTAATCTATCTGCAGGTGCAGAAGGCGTTTTTGCATTTGTTAATCTAGAATACTAATGTCTTGTTTCAGGGGCCAGATGGGGCTATCTGAAGATGAACAGAAAGCATCCCAACAACATAGGCTCAGCATTTATGGTGGAACAGATGTGGACAGAGGCACCATAAACTCAAATGATGT-TGGTATTCGCACATGTGGATCCCAATTAGAGGGTATGGGCTGTTGCCAGGCAAATGGAAATGTCTCATGTTGTCAGACCACTCAACCACCAGTTGATG</genome_strand>
        <mrna_strand>CGAAACACTCACACGGAAGTCTTCGGACACTG.................................................................................................................GTATGGCTATGTTACACCTGATGATGTACCACAGCTGCTTGAACAGCATGTTGCTAAAGGAGAGATTGATGATTGGTTGACGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCAGATTGGGCTATCTGAAGATGAACAGAAAGCATCCCAACAACATAGGCTCAGCATTTATGGTGGAACAGATGTGGACTGAGGCGCCATAAACTCAAATGATGTATGGTATTCGCACATGTGGATCCCAATTAGAGGGTATGGGCTAGAGCTCCGCTAATGGAAATGTATAATGTTGGCAGACCACTCAACCACCAGTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E380025" ref_strand="-" ref_description="SGN-E380025 [TUS-1-M6]">
      <seq>ttgcttgaacagcatgttgctaaaggagagattgttgattggttgtggaggggccagatggggctatctgaagatgaacagaaagcatcccaacaacataggctcagcatttatggtggaacagatgtggacagaggcaccataaactcaaatgatgttggtattcgcacatgtggatcccaattagagggtatgggctgttgccaggcaaatggaaatgtctcatgttgtcagaccactcaaccaccagttgatgcagacaatttcaatctcaaccaagagaacgctgagtttacaaccgaaaagaagagcagcttcaagagacaagtttctcgaagtagcagtggcaaagggactcgttctcgcaaggtgtgctcaatgcctacttggtacgagagctgggagcgtgaagatacgtatgcagttcttgctgttgttggtgctgccatatcagttgcctatgccttcaactgctacagacagctgaagtaatattatttataaagaagttcacatttgatttcattgttggttaaaaacaattatgtgctttgtctaatgtaaatttaggttattgcatgtgtgtaagtcacttgcaatgaagtctagaatttgatttacttggggggataacatttatgccaaatagtgttgtaatgatagactattggttctgtaaatttaggagccttcttttgtttgcatgtttccaacacttcctggtgtctgaagtgtttgtttgatgattgaatctgttggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="65120" stop="67040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65420" g_stop="65469" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65470" i_stop="66028" i_length="559">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66029" g_stop="66740" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="762" r_length="712" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E380025" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E380025" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="65420" e_stop="65469"/>
          <exon e_start="66029" e_stop="66740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTTGAACAGCATGTTGCTAAAGGAGAGATTGTTGATTGGTTGTGGAGGTAAGTTCTCTCTCCTGTTGCTATTATAATCGCATCTTGAGAACTACGTCTCCGAGCTATATATCCCCGTGTAATTCTGGTCATGGAATAAATGAAACTTGCTTCTAGATAAATGTAACTCGTTTTTGAGCTATTATGTACTTGTCAGCTCTAAAACATTAGGAATGTTACATTAAAAATTGTGGTTAGGATGCAAGTTATGTATTGGCATTATTATGTCAATATTTGTTACCTCTTAAACGGCTTAAGTTCCATAACCCGTGCCGTGATCTTCCTATGGACCATAGCTTGTGTTTTTGGTGAATCAAAAATTTTAGATGTATTCAATGGTAACTCACTGCTTCGTGAAGTTCTGAGGGTTTAAGAACACATAATGTTAATTCAAGTTTACTCATTAATGTGATCTAAAGTACTAAAGGGGAAGTGTCCTGTAGCAACCATCCTAATTTTGTAGAGGTGAAAAATTGGGTTTTCAAGATTCATCTGTTAGCTAATCTATCTGCAGGTGCAGAAGGCGTTTTTGCATTTGTTAATCTAGAATACTAATGTCTTGTTTCAGGGGCCAGATGGGGCTATCTGAAGATGAACAGAAAGCATCCCAACAACATAGGCTCAGCATTTATGGTGGAACAGATGTGGACAGAGGCACCATAAACTCAAATGATGTTGGTATTCGCACATGTGGATCCCAATTAGAGGGTATGGGCTGTTGCCAGGCAAATGGAAATGTCTCATGTTGTCAGACCACTCAACCACCAGTTGATGCAGACAATTTCAATCTCAACCAAGAGAACGCTGAGTTTACAACCGAAAAGAAGAGCAGCTTCAAGAGACAAGTTTCTCGAAGTAGCAGTGGCAAAGGGACTCGTTCTCGCAAGGTGTGCTCAATGCCTACTTGGTACGAGAGCTGGGAGCGTGAAGATACGTATGCAGTTCTTGCTGTTGTTGGTGCTGCCATATCAGTTGCCTATGCCTTCAACTGCTACAGACAGCTGAAGTAATATTATTTATAAAGAAGTTCACATTTGATTTCATTGTTGGTTAAAAACAATTATGTGCTTTGTCTAATGTAAATTTAGGTTATTGCATGTGTGTAAGTCACTTGCAATGAAGTCTAGAATTTGATTTACTTGGGGGGATAACATTTATGCCAAATAGTGTTGTAATGATAGACTATTGGTTCTGTAAATTTAGGAGCCTTCTTTTGTTTGCATGTTTCCAACACTTCCTGGTGTCTGAAGTGTTTGTTTGATCTTTGAATCTGTTGGCTC</genome_strand>
        <mrna_strand>TTGCTTGAACAGCATGTTGCTAAAGGAGAGATTGTTGATTGGTTGTGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCAGATGGGGCTATCTGAAGATGAACAGAAAGCATCCCAACAACATAGGCTCAGCATTTATGGTGGAACAGATGTGGACAGAGGCACCATAAACTCAAATGATGTTGGTATTCGCACATGTGGATCCCAATTAGAGGGTATGGGCTGTTGCCAGGCAAATGGAAATGTCTCATGTTGTCAGACCACTCAACCACCAGTTGATGCAGACAATTTCAATCTCAACCAAGAGAACGCTGAGTTTACAACCGAAAAGAAGAGCAGCTTCAAGAGACAAGTTTCTCGAAGTAGCAGTGGCAAAGGGACTCGTTCTCGCAAGGTGTGCTCAATGCCTACTTGGTACGAGAGCTGGGAGCGTGAAGATACGTATGCAGTTCTTGCTGTTGTTGGTGCTGCCATATCAGTTGCCTATGCCTTCAACTGCTACAGACAGCTGAAGTAATATTATTTATAAAGAAGTTCACATTTGATTTCATTGTTGGTTAAAAACAATTATGTGCTTTGTCTAATGTAAATTTAGGTTATTGCATGTGTGTAAGTCACTTGCAATGAAGTCTAGAATTTGATTTACTTGGGGGGATAACATTTATGCCAAATAGTGTTGTAATGATAGACTATTGGTTCTGTAAATTTAGGAGCCTTCTTTTGTTTGCATGTTTCCAACACTTCCTGGTGTCTGAAGTGTTTGTTTGATGATTGAATCTGTTGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E550241" ref_strand="-" ref_description="SGN-E550241 [TUS-5-N19]">
      <seq>gcgctaaaccaaattaagctcttaactgctatatctaccattgatgacctaaattatcntgagaagacagatacatattacattgttaatgctccatacatattctcagcctgctggaaggttgtgagacctcttttacaagaaagaactaaaaagaaagtccaagtgctctccggctcgggaaaagatgaactgttgaagataatggattatgcatcgctaccacacttttgtaaaagagaaggctcgggttcatctaaacatggtagaaatggtacaaatgataactgtttctcctttgatcacgcttttcatcagcaactctatgattatactaagcaacaagctctagcattagaggctgtagcaccaagcaaagaaggatctgtccatgtgaccttacctgagcctgatccagatgatgcaaagattgctgaaacaattgaatccacattccatagaatgggggagaaaaacggaatttgtcaatcatttcatgaaataaagatcaatggcgattgaagctgattcgctgtagtcttggtaactgcttattttgaatccagacgagaggatttaagtaagcgttgttatagtactaatatggcttgcatcatctcgatgcaggatttagttagaagctaagttgtaacatggcatttacgctaccttggagtggactatcatatgaatagtgaaaaatgtttatgctccccacaaagtattgacgcgaatttcgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="69816" stop="66839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69516" g_stop="69499" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69498" i_stop="68440" i_length="1059">
            <donor d_prob="0.975" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68439" g_stop="68337" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="120" r_length="102" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68336" i_stop="68259" i_length="78">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.558" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68258" g_stop="68178" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="201" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68177" i_stop="67682" i_length="496">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67681" g_stop="67139" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="743" r_length="542" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E550241" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550241" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69516" e_stop="69499"/>
          <exon e_start="68439" e_stop="68337"/>
          <exon e_start="68258" e_stop="68178"/>
          <exon e_start="67681" e_stop="67139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCTAAACCAAATTAAGGTATCTCGTTATTTGTTTGACATTGTAATTATACTTCATCGACCTTCCTACCAAAATCCTACTGTGTAAATCCTTATCATCTTTTTTCTAGTCAACATTCTTCTTGGATGTATAGATTCACTTATTTCGCTGAAAATCTTTGGTTCTGCATTCGTCGTCCACACTAATAGTTCTTGTTAAAGTTTTGAAATGATGTTCAATTGTCACTTTCTCCAAATAGAGATAAAGTTTTAAGTTTTCGGAGTTAAAAAGACTCTTTTGAGTGCATTTGTTCATTCACTAATTACTGCTATTTACAAAATTTGAACTTTTGATTATTGATCATCAATTACTCAAACAACATAAAAATAGCATATATTGGAGCGCCAAGAGAAGTTCTTGGGTGGTACTGGAGATAGAAAGTAACCTGCATCAGACATATAGATATAGAAAGGATATGGATGAAAAAATAGTCACAAGGACGAGAACAACAGGAGTTATAGGCTTATAGCAACTAGAAGCTCAAATGAGATGGTGCAATAATAGTGATTGAAGTGATAAAAGGGGGATGAGTAAAACTAAAATTGCATTGAGAGAAGACATTTCGAAAGATGTATGATATCTCAACATCAATGCACACTTAAACTAAAAACATAGCAGAATGGAAGAAAAGATCTATACAGGTGATCCAACTAGTTAAGAAACTTATGTTTTTCAAGAGTCTTTTTGGTCTTGTTAATACTTAGATGTGGATGTGGCATTCACCCGAGGCCTGGTGGCTATAACAAGGTGGTGTCTAGCCCAATTTGTGTGTGCCTCGATAATTCCACCGAATATTTTCTACCTCGCACCAACATAGGCGTTGAATAAATAACTACCGAAGGCTTAGGCAGGAAGAAAAATAGTTATTAGTTTGTTGTAGAAAACAAATCATTTGTTACTGGAATCAAAATGAATGTAGAGTATCATATAGCTGATTCCAATTACTTTGGGATTGAGACATTTGATTGATATTGATTATTGAAATGATTTATTCATTCATCTTTTTTAAACTTGACATTTTGTTTATTCCTCTTGTAGCTCTTAACTGCTATATCTACCA-TGATGACCCTAAATTATCCCTGAGAAGACAGATACATATTACATTGTTAATGCTCCATACATATTCTCAGCCTGCTGGAAGGTTCGTGTCTAACTTGTAATTATGCACGAGTCTTGCTGAATCAGTTAACCTAAAGCCTAACTATGTACAAACTAGCAGGTTGTGAGACCTCTTTTACAAGAAAGAACTAAAAAGAAAGTCCAAGTGCTCTCCGGCTCGGGAAAAGATGAACTGTTGAAGGTAAGATGTCTTTTTTCTTTTGAGTGGAAGGATCAAATACACCAGCTGAACTATCACCAAATGTTTATCAAAACACACCTCAACTATTAGTTTTTCCATTATCACACCCAAACCAAGTAGGAAAAGGGAAAAACTTCTAGTTGAGTGTGTGTTTCGATACACAATTAATGATAGTTCAGCTAGAAAGGTAGTTTAGGTATGGAACTCGAAAAGTGGAATTCTTCATTTGTGTTTTTGACCCTTCCAACAATTTTTTTCTTATTATGAGTTATCAAAGGTAAGATGATGTTCTTTAAGTCGATTGCCTTTTATCCGTTGATTCTCTCACTTCAGGAGAGGCTTACTGTTGCAGATGAACTCAATACTATTCTTTGTAGTTTGTAGAATCCATCTTTATTCGCATTAATAATGTTTGGTCATATACCTCGTGTTTCTGAGGAATACTATACTTGACTTCAAATCTAACTAGAATTATCTCTTAATTCTCAATTTGCAGATAATGGATTATGCATCGCTACCACACTTTTGTAAAAGAGAAGGCTCGGGTTCATCTAAACATGGTAGAAATGGTACAAATGATAACTGTTTCTCCTTTGATCACGCTTTTCATCAGCAACTCTATGATTATACTAAGCAACAAGCTCTAGCATTAGAGGCTGTAGCACCAAGCAAAGAAGGATCTGTCCATGTGACCTTACCTGAGCCTGATCCAGATGATGCAAAGATTGCTGAAACAATTGAATCCACATTCCATAGAATGGGGGAGAAAAACGGAATTTGTCAATCATTTCATGAAATAAAGATCAATGGCGATTGAAGCTGATTCGCTGTAGTCTTGGTAACTGCTTATTTTGAATCCAGACGAGAGGATTTAAGTAAGCGTTGTTATAGTACTAATATGGCTTGCATCATCTCGATGCAGGATTTAGTTAGAAGCTAAGTTGTAACATGGCATTTACGCTACCTTGGAGTGGACTATCATATGAATAGTCAAAAATGTTTATGCTCCCCACAAAGTATTTTACGCGAATTTCGCTGA</genome_strand>
        <mrna_strand>GCGCTAAACCAAATTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTAACTGCTATATCTACCATTGATGA-CCTAAATTAT-CNTGAGAAGACAGATACATATTACATTGTTAATGCTCCATACATATTCTCAGCCTGCTGGAAG..............................................................................GTTGTGAGACCTCTTTTACAAGAAAGAACTAAAAAGAAAGTCCAAGTGCTCTCCGGCTCGGGAAAAGATGAACTGTTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGGATTATGCATCGCTACCACACTTTTGTAAAAGAGAAGGCTCGGGTTCATCTAAACATGGTAGAAATGGTACAAATGATAACTGTTTCTCCTTTGATCACGCTTTTCATCAGCAACTCTATGATTATACTAAGCAACAAGCTCTAGCATTAGAGGCTGTAGCACCAAGCAAAGAAGGATCTGTCCATGTGACCTTACCTGAGCCTGATCCAGATGATGCAAAGATTGCTGAAACAATTGAATCCACATTCCATAGAATGGGGGAGAAAAACGGAATTTGTCAATCATTTCATGAAATAAAGATCAATGGCGATTGAAGCTGATTCGCTGTAGTCTTGGTAACTGCTTATTTTGAATCCAGACGAGAGGATTTAAGTAAGCGTTGTTATAGTACTAATATGGCTTGCATCATCTCGATGCAGGATTTAGTTAGAAGCTAAGTTGTAACATGGCATTTACGCTACCTTGGAGTGGACTATCATATGAATAGTGAAAAATGTTTATGCTCCCCACAAAGTA-TTGACGCGAATTTCGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E389672" ref_strand="-" ref_description="SGN-E389672 [TUS-4-N19]">
      <seq>gaagacagatacatattacattgttaatgctccatacatattctcagcctgctggaaggttgtgagacctctttaccaagaaagaactaaaaagaaagtccaagtgctctccggctcgggaaaagatgaactgttgaagataatggattatgcatcgctaccacacttttgtaaaagagaaggctcgggttcatctaaacatggtagaaatggtacaaatgataactgtttctcctttgatcacgcttttcatcagcaactctatgattatactaagcaacaagctctagcattagaggctgtagcaccaagcaaagaaggatctgtccatgtgaccttacctgagcctgatccagatgatgcaaagattgctgaaacaattgaatccacattccatagaatgggggagaaaaacggaatttgtcaatcatttcatgaaataaagatcaatggcgattgaagctgattcgctgtagtcttggtaactgcttattttgaatccagacgagaggatttaagtaagcgttgttatagtactaatatggcttgcatcatctcgatgcaggatttagttagaagctaagttgtaacatggcatttacgctaccttggagtggactatcatatgaatagtcaaaaatgtttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="68694" stop="66873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68394" g_stop="68337" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68336" i_stop="68259" i_length="78">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.558" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68258" g_stop="68178" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="139" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68177" i_stop="67682" i_length="496">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67681" g_stop="67173" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="648" r_length="509" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E389672" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389672" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68394" e_stop="68337"/>
          <exon e_start="68258" e_stop="68178"/>
          <exon e_start="67681" e_stop="67173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACAGATACATATTACATTGTTAATGCTCCATACATATTCTCAGCCTGCTGGAAGGTTCGTGTCTAACTTGTAATTATGCACGAGTCTTGCTGAATCAGTTAACCTAAAGCCTAACTATGTACAAACTAGCAGGTTGTGAGACCTCTTTTACAAGAAAGAACTAAAAAGAAAGTCCAAGTGCTCTCCGGCTCGGGAAAAGATGAACTGTTGAAGGTAAGATGTCTTTTTTCTTTTGAGTGGAAGGATCAAATACACCAGCTGAACTATCACCAAATGTTTATCAAAACACACCTCAACTATTAGTTTTTCCATTATCACACCCAAACCAAGTAGGAAAAGGGAAAAACTTCTAGTTGAGTGTGTGTTTCGATACACAATTAATGATAGTTCAGCTAGAAAGGTAGTTTAGGTATGGAACTCGAAAAGTGGAATTCTTCATTTGTGTTTTTGACCCTTCCAACAATTTTTTTCTTATTATGAGTTATCAAAGGTAAGATGATGTTCTTTAAGTCGATTGCCTTTTATCCGTTGATTCTCTCACTTCAGGAGAGGCTTACTGTTGCAGATGAACTCAATACTATTCTTTGTAGTTTGTAGAATCCATCTTTATTCGCATTAATAATGTTTGGTCATATACCTCGTGTTTCTGAGGAATACTATACTTGACTTCAAATCTAACTAGAATTATCTCTTAATTCTCAATTTGCAGATAATGGATTATGCATCGCTACCACACTTTTGTAAAAGAGAAGGCTCGGGTTCATCTAAACATGGTAGAAATGGTACAAATGATAACTGTTTCTCCTTTGATCACGCTTTTCATCAGCAACTCTATGATTATACTAAGCAACAAGCTCTAGCATTAGAGGCTGTAGCACCAAGCAAAGAAGGATCTGTCCATGTGACCTTACCTGAGCCTGATCCAGATGATGCAAAGATTGCTGAAACAATTGAATCCACATTCCATAGAATGGGGGAGAAAAACGGAATTTGTCAATCATTTCATGAAATAAAGATCAATGGCGATTGAAGCTGATTCGCTGTAGTCTTGGTAACTGCTTATTTTGAATCCAGACGAGAGGATTTAAGTAAGCGTTGTTATAGTACTAATATGGCTTGCATCATCTCGATGCAGGATTTAGTTAGAAGCTAAGTTGTAACATGGCATTTACGCTACCTTGGAGTGGACTATCATATGAATAGTCAAAAATGTTTATG</genome_strand>
        <mrna_strand>GAAGACAGATACATATTACATTGTTAATGCTCCATACATATTCTCAGCCTGCTGGAAG..............................................................................GTTGTGAGACCTCTTTACCAAGAAAGAACTAAAAAGAAAGTCCAAGTGCTCTCCGGCTCGGGAAAAGATGAACTGTTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGGATTATGCATCGCTACCACACTTTTGTAAAAGAGAAGGCTCGGGTTCATCTAAACATGGTAGAAATGGTACAAATGATAACTGTTTCTCCTTTGATCACGCTTTTCATCAGCAACTCTATGATTATACTAAGCAACAAGCTCTAGCATTAGAGGCTGTAGCACCAAGCAAAGAAGGATCTGTCCATGTGACCTTACCTGAGCCTGATCCAGATGATGCAAAGATTGCTGAAACAATTGAATCCACATTCCATAGAATGGGGGAGAAAAACGGAATTTGTCAATCATTTCATGAAATAAAGATCAATGGCGATTGAAGCTGATTCGCTGTAGTCTTGGTAACTGCTTATTTTGAATCCAGACGAGAGGATTTAAGTAAGCGTTGTTATAGTACTAATATGGCTTGCATCATCTCGATGCAGGATTTAGTTAGAAGCTAAGTTGTAACATGGCATTTACGCTACCTTGGAGTGGACTATCATATGAATAGTCAAAAATGTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E549978" ref_strand="+" ref_description="SGN-E549978 [TUS-5-N19]">
      <seq>attcatcacatatccaaatgaatgaataccgtgaccgtataatattgccgtctgcatcaaagaaatttgggcggtatattgggacctgtgttaaggttttggacatgactggtctaaagctttctgcgctaaaccaaattaagctcttaactgctatatctaccattgatgacctaaattatcctgagaagacagatacatattacattgttaatgctccatacatattctcagcctgctggaaggttgtgagacctcttttacaagaaagaactaaaaagaaagtccaagtgctctccggctcgggaaaagatgaactgttgaagataatggattatgcatcgctaccacacttttgtaaaagagaaggctcgggttcatctaaacatggtagaaatggtacaaatgataactgtttctcctttgatcacgcttttcatcagcaactctatgattatactaagcaacaagctctagcattagaggctgtagcaccaagcaaagaaggatctgtccatgtgaccttacctgagcctgatccagatgatgcaaagattgctgaaacaattgaatccacattccatagaatgggggagaaaaacggaatttgtcaatcatttcatgaaataaagatcaatggcgattgaagctgattcgctgtagtcttggtaactgcttattttgaatccagacgagaggatttaaagtaagcgtgttatagtactaatatggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="70029" stop="66974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69729" g_stop="69682" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69681" i_stop="69595" i_length="87">
            <donor d_prob="0.882" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69594" g_stop="69499" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="143" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69498" i_stop="68440" i_length="1059">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68439" g_stop="68337" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="245" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68336" i_stop="68259" i_length="78">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.558" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68258" g_stop="68178" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="326" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68177" i_stop="67682" i_length="496">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67681" g_stop="67274" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="734" r_length="408" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E549978" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69729" e_stop="69682"/>
          <exon e_start="69594" e_stop="69499"/>
          <exon e_start="68439" e_stop="68337"/>
          <exon e_start="68258" e_stop="68178"/>
          <exon e_start="67681" e_stop="67274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAATCACATATCCAAATGAATGAATACCGTGACCGTATAATATTGGTATGTCCTTGTGTTTGTTCATTCAAATAGGAGATAAATACGAAAAAAATATCCTATGATGTTGACTGGCTGATGTTCATGTTACAGCCGTCTGCATCAAAGAAATTTGGGCGGTATATTGGGACCTGTGTTAAGGTTTTGGACATGACTGGTCTAAAGCTTTCTGCGCTAAACCAAATTAAGGTATCTCGTTATTTGTTTGACATTGTAATTATACTTCATCGACCTTCCTACCAAAATCCTACTGTGTAAATCCTTATCATCTTTTTTCTAGTCAACATTCTTCTTGGATGTATAGATTCACTTATTTCGCTGAAAATCTTTGGTTCTGCATTCGTCGTCCACACTAATAGTTCTTGTTAAAGTTTTGAAATGATGTTCAATTGTCACTTTCTCCAAATAGAGATAAAGTTTTAAGTTTTCGGAGTTAAAAAGACTCTTTTGAGTGCATTTGTTCATTCACTAATTACTGCTATTTACAAAATTTGAACTTTTGATTATTGATCATCAATTACTCAAACAACATAAAAATAGCATATATTGGAGCGCCAAGAGAAGTTCTTGGGTGGTACTGGAGATAGAAAGTAACCTGCATCAGACATATAGATATAGAAAGGATATGGATGAAAAAATAGTCACAAGGACGAGAACAACAGGAGTTATAGGCTTATAGCAACTAGAAGCTCAAATGAGATGGTGCAATAATAGTGATTGAAGTGATAAAAGGGGGATGAGTAAAACTAAAATTGCATTGAGAGAAGACATTTCGAAAGATGTATGATATCTCAACATCAATGCACACTTAAACTAAAAACATAGCAGAATGGAAGAAAAGATCTATACAGGTGATCCAACTAGTTAAGAAACTTATGTTTTTCAAGAGTCTTTTTGGTCTTGTTAATACTTAGATGTGGATGTGGCATTCACCCGAGGCCTGGTGGCTATAACAAGGTGGTGTCTAGCCCAATTTGTGTGTGCCTCGATAATTCCACCGAATATTTTCTACCTCGCACCAACATAGGCGTTGAATAAATAACTACCGAAGGCTTAGGCAGGAAGAAAAATAGTTATTAGTTTGTTGTAGAAAACAAATCATTTGTTACTGGAATCAAAATGAATGTAGAGTATCATATAGCTGATTCCAATTACTTTGGGATTGAGACATTTGATTGATATTGATTATTGAAATGATTTATTCATTCATCTTTTTTAAACTTGACATTTTGTTTATTCCTCTTGTAGCTCTTAACTGCTATATCTACCA-TGATGACCCTAAATTATCCCTGAGAAGACAGATACATATTACATTGTTAATGCTCCATACATATTCTCAGCCTGCTGGAAGGTTCGTGTCTAACTTGTAATTATGCACGAGTCTTGCTGAATCAGTTAACCTAAAGCCTAACTATGTACAAACTAGCAGGTTGTGAGACCTCTTTTACAAGAAAGAACTAAAAAGAAAGTCCAAGTGCTCTCCGGCTCGGGAAAAGATGAACTGTTGAAGGTAAGATGTCTTTTTTCTTTTGAGTGGAAGGATCAAATACACCAGCTGAACTATCACCAAATGTTTATCAAAACACACCTCAACTATTAGTTTTTCCATTATCACACCCAAACCAAGTAGGAAAAGGGAAAAACTTCTAGTTGAGTGTGTGTTTCGATACACAATTAATGATAGTTCAGCTAGAAAGGTAGTTTAGGTATGGAACTCGAAAAGTGGAATTCTTCATTTGTGTTTTTGACCCTTCCAACAATTTTTTTCTTATTATGAGTTATCAAAGGTAAGATGATGTTCTTTAAGTCGATTGCCTTTTATCCGTTGATTCTCTCACTTCAGGAGAGGCTTACTGTTGCAGATGAACTCAATACTATTCTTTGTAGTTTGTAGAATCCATCTTTATTCGCATTAATAATGTTTGGTCATATACCTCGTGTTTCTGAGGAATACTATACTTGACTTCAAATCTAACTAGAATTATCTCTTAATTCTCAATTTGCAGATAATGGATTATGCATCGCTACCACACTTTTGTAAAAGAGAAGGCTCGGGTTCATCTAAACATGGTAGAAATGGTACAAATGATAACTGTTTCTCCTTTGATCACGCTTTTCATCAGCAACTCTATGATTATACTAAGCAACAAGCTCTAGCATTAGAGGCTGTAGCACCAAGCAAAGAAGGATCTGTCCATGTGACCTTACCTGAGCCTGATCCAGATGATGCAAAGATTGCTGAAACAATTGAATCCACATTCCATAGAATGGGGGAGAAAAACGGAATTTGTCAATCATTTCATGAAATAAAGATCAATGGCGATTGAAGCTGATTCGCTGTAGTCTTGGTAACTGCTTATTTTGAATCCAGACGAGAGGATTT-AAGTAAGCGTTGTTATAGTACTAATATGGCT</genome_strand>
        <mrna_strand>ATTCA-TCACATATCCAAATGAATGAATACCGTGACCGTATAATATTG.......................................................................................CCGTCTGCATCAAAGAAATTTGGGCGGTATATTGGGACCTGTGTTAAGGTTTTGGACATGACTGGTCTAAAGCTTTCTGCGCTAAACCAAATTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTAACTGCTATATCTACCATTGATGA-CCTAAATTAT-CCTGAGAAGACAGATACATATTACATTGTTAATGCTCCATACATATTCTCAGCCTGCTGGAAG..............................................................................GTTGTGAGACCTCTTTTACAAGAAAGAACTAAAAAGAAAGTCCAAGTGCTCTCCGGCTCGGGAAAAGATGAACTGTTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGGATTATGCATCGCTACCACACTTTTGTAAAAGAGAAGGCTCGGGTTCATCTAAACATGGTAGAAATGGTACAAATGATAACTGTTTCTCCTTTGATCACGCTTTTCATCAGCAACTCTATGATTATACTAAGCAACAAGCTCTAGCATTAGAGGCTGTAGCACCAAGCAAAGAAGGATCTGTCCATGTGACCTTACCTGAGCCTGATCCAGATGATGCAAAGATTGCTGAAACAATTGAATCCACATTCCATAGAATGGGGGAGAAAAACGGAATTTGTCAATCATTTCATGAAATAAAGATCAATGGCGATTGAAGCTGATTCGCTGTAGTCTTGGTAACTGCTTATTTTGAATCCAGACGAGAGGATTTAAAGTAAGCG-TGTTATAGTACTAATATGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E389931" ref_strand="+" ref_description="SGN-E389931 [TUS-4-N19]">
      <seq>attcatcacatatccaaatgaatgaataccgtgaccgtataatattgccgtctgcatcaaagaaatttgggcggtatattgggacctgtgttaaggttttggacatgactggtctaaagctttctgcgctaaaccaaattaagctcttaactgctatatctaccattgatgacctaaattatcctgagaagacagatacatattacattgttaatgctccatacatattctcagcctgctggaaggttgtgagacctcttttacaagaaagaactaaaaagaaagtccaagtgctctccggctcgggaaaagatgaactgttgaagataatggattatgcatcgctaccacacttttgtaaaagagaaggctcgggttcatctaaacatggtagaaatggtacaaatgataactgtttctcctttgatcacgcttttcatcagcaactctatgattatactaagcaacaagctctagcattagaggctgtagcaccaagcaaagaaggatctgtccatgtgaccttacctgagcctgatccagaatgatgcaagattgctgaaacaattgaatccacattccatagaatgggggagaaaaacggaaatttgtcatcatttcatgaaataaagatcaatggcgattgaagctgattcgctgtagtctttggtactgcttattttgaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="70029" stop="67019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69729" g_stop="69682" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69681" i_stop="69595" i_length="87">
            <donor d_prob="0.882" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69594" g_stop="69499" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="143" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69498" i_stop="68440" i_length="1059">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68439" g_stop="68337" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="245" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68336" i_stop="68259" i_length="78">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.558" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68258" g_stop="68178" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="326" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68177" i_stop="67682" i_length="496">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67681" g_stop="67319" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="689" r_length="363" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E389931" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69729" e_stop="69682"/>
          <exon e_start="69594" e_stop="69499"/>
          <exon e_start="68439" e_stop="68337"/>
          <exon e_start="68258" e_stop="68178"/>
          <exon e_start="67681" e_stop="67319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAATCACATATCCAAATGAATGAATACCGTGACCGTATAATATTGGTATGTCCTTGTGTTTGTTCATTCAAATAGGAGATAAATACGAAAAAAATATCCTATGATGTTGACTGGCTGATGTTCATGTTACAGCCGTCTGCATCAAAGAAATTTGGGCGGTATATTGGGACCTGTGTTAAGGTTTTGGACATGACTGGTCTAAAGCTTTCTGCGCTAAACCAAATTAAGGTATCTCGTTATTTGTTTGACATTGTAATTATACTTCATCGACCTTCCTACCAAAATCCTACTGTGTAAATCCTTATCATCTTTTTTCTAGTCAACATTCTTCTTGGATGTATAGATTCACTTATTTCGCTGAAAATCTTTGGTTCTGCATTCGTCGTCCACACTAATAGTTCTTGTTAAAGTTTTGAAATGATGTTCAATTGTCACTTTCTCCAAATAGAGATAAAGTTTTAAGTTTTCGGAGTTAAAAAGACTCTTTTGAGTGCATTTGTTCATTCACTAATTACTGCTATTTACAAAATTTGAACTTTTGATTATTGATCATCAATTACTCAAACAACATAAAAATAGCATATATTGGAGCGCCAAGAGAAGTTCTTGGGTGGTACTGGAGATAGAAAGTAACCTGCATCAGACATATAGATATAGAAAGGATATGGATGAAAAAATAGTCACAAGGACGAGAACAACAGGAGTTATAGGCTTATAGCAACTAGAAGCTCAAATGAGATGGTGCAATAATAGTGATTGAAGTGATAAAAGGGGGATGAGTAAAACTAAAATTGCATTGAGAGAAGACATTTCGAAAGATGTATGATATCTCAACATCAATGCACACTTAAACTAAAAACATAGCAGAATGGAAGAAAAGATCTATACAGGTGATCCAACTAGTTAAGAAACTTATGTTTTTCAAGAGTCTTTTTGGTCTTGTTAATACTTAGATGTGGATGTGGCATTCACCCGAGGCCTGGTGGCTATAACAAGGTGGTGTCTAGCCCAATTTGTGTGTGCCTCGATAATTCCACCGAATATTTTCTACCTCGCACCAACATAGGCGTTGAATAAATAACTACCGAAGGCTTAGGCAGGAAGAAAAATAGTTATTAGTTTGTTGTAGAAAACAAATCATTTGTTACTGGAATCAAAATGAATGTAGAGTATCATATAGCTGATTCCAATTACTTTGGGATTGAGACATTTGATTGATATTGATTATTGAAATGATTTATTCATTCATCTTTTTTAAACTTGACATTTTGTTTATTCCTCTTGTAGCTCTTAACTGCTATATCTACCA-TGATGACCCTAAATTATCCCTGAGAAGACAGATACATATTACATTGTTAATGCTCCATACATATTCTCAGCCTGCTGGAAGGTTCGTGTCTAACTTGTAATTATGCACGAGTCTTGCTGAATCAGTTAACCTAAAGCCTAACTATGTACAAACTAGCAGGTTGTGAGACCTCTTTTACAAGAAAGAACTAAAAAGAAAGTCCAAGTGCTCTCCGGCTCGGGAAAAGATGAACTGTTGAAGGTAAGATGTCTTTTTTCTTTTGAGTGGAAGGATCAAATACACCAGCTGAACTATCACCAAATGTTTATCAAAACACACCTCAACTATTAGTTTTTCCATTATCACACCCAAACCAAGTAGGAAAAGGGAAAAACTTCTAGTTGAGTGTGTGTTTCGATACACAATTAATGATAGTTCAGCTAGAAAGGTAGTTTAGGTATGGAACTCGAAAAGTGGAATTCTTCATTTGTGTTTTTGACCCTTCCAACAATTTTTTTCTTATTATGAGTTATCAAAGGTAAGATGATGTTCTTTAAGTCGATTGCCTTTTATCCGTTGATTCTCTCACTTCAGGAGAGGCTTACTGTTGCAGATGAACTCAATACTATTCTTTGTAGTTTGTAGAATCCATCTTTATTCGCATTAATAATGTTTGGTCATATACCTCGTGTTTCTGAGGAATACTATACTTGACTTCAAATCTAACTAGAATTATCTCTTAATTCTCAATTTGCAGATAATGGATTATGCATCGCTACCACACTTTTGTAAAAGAGAAGGCTCGGGTTCATCTAAACATGGTAGAAATGGTACAAATGATAACTGTTTCTCCTTTGATCACGCTTTTCATCAGCAACTCTATGATTATACTAAGCAACAAGCTCTAGCATTAGAGGCTGTAGCACCAAGCAAAGAAGGATCTGTCCATGTGACCTTACCTGAGCCTGATCCAG-ATGATGCAAAGATTGCTGAAACAATTGAATCCACATTCCATAGAATGGGGGAGAAAAACGG-AATTTGTCAATCATTTCATGAAATAAAGATCAATGGCGATTGAAGCTGATTCGCTGTAGTCTTGGTAACTGCTTATTTTGAATCC</genome_strand>
        <mrna_strand>ATTCA-TCACATATCCAAATGAATGAATACCGTGACCGTATAATATTG.......................................................................................CCGTCTGCATCAAAGAAATTTGGGCGGTATATTGGGACCTGTGTTAAGGTTTTGGACATGACTGGTCTAAAGCTTTCTGCGCTAAACCAAATTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTAACTGCTATATCTACCATTGATGA-CCTAAATTAT-CCTGAGAAGACAGATACATATTACATTGTTAATGCTCCATACATATTCTCAGCCTGCTGGAAG..............................................................................GTTGTGAGACCTCTTTTACAAGAAAGAACTAAAAAGAAAGTCCAAGTGCTCTCCGGCTCGGGAAAAGATGAACTGTTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGGATTATGCATCGCTACCACACTTTTGTAAAAGAGAAGGCTCGGGTTCATCTAAACATGGTAGAAATGGTACAAATGATAACTGTTTCTCCTTTGATCACGCTTTTCATCAGCAACTCTATGATTATACTAAGCAACAAGCTCTAGCATTAGAGGCTGTAGCACCAAGCAAAGAAGGATCTGTCCATGTGACCTTACCTGAGCCTGATCCAGAATGATGC-AAGATTGCTGAAACAATTGAATCCACATTCCATAGAATGGGGGAGAAAAACGGAAATTTGTC-ATCATTTCATGAAATAAAGATCAATGGCGATTGAAGCTGATTCGCTGTAGTCTTTGGTACTGCTTATTTTGAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E701589" ref_strand="+" ref_description="SGN-E701589 [FA16BF03]">
      <seq>cttatactaaaaacatagcagaatggaagaaaagatctatacaggtgatccaactagttaagaaacttatgtttttcaagagtctttttggtcttgttaatacttagatgtggatgtggcattcacccgaggcctggtggctataacaaggtggtgtctagcccaatttgtgtgtgcctcgataattccaccgaatattttctacctcgcaccaacataggcgttgaataaataactaccgaaggcttaggcaggaagaaaaatagttattagtttgttgtagaaaacaaatcatttgttactggaatcaaaatgaatgtagagtatcatatagctgattccaattactttgggattgagacatttgattgatattgattattgaaatgatttattcattcatcttttttaaacttgacattttgtttattcctcttgtagctcttaactgctatatctaccattgatgacctaaattatcctgagaagacagatacatattacattgttaatgctccatacatattctcagcctgctggaaggttgtgagacctcttttacaagaaagaactaaaaagaaagtccaagtgctctccggctcgggaaaagatgaactgttgaagataatggattatgcatcgctaccacacttttgtaaaagagaaggctcgggttcatctaaacatggtagaaatggtacaaatgataactgtttctcctttgatcacgcttttcatcagcaactctatgattatactaagcaacaagctctagcattagaggctgtagcaccaagcaaagaaggatctgtccatgtgaccctacctgagcctgatccaaatgatgcaaagattgctgaaacaattgaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="69180" stop="67134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68880" g_stop="68337" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68336" i_stop="68259" i_length="78">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.558" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68258" g_stop="68178" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="624" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68177" i_stop="67682" i_length="496">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67681" g_stop="67434" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="872" r_length="248" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E701589" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68880" e_stop="68337"/>
          <exon e_start="68258" e_stop="68178"/>
          <exon e_start="67681" e_stop="67434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAACTAAAAACATAGCAGAATGGAAGAAAAGATCTATACAGGTGATCCAACTAGTTAAGAAACTTATGTTTTTCAAGAGTCTTTTTGGTCTTGTTAATACTTAGATGTGGATGTGGCATTCACCCGAGGCCTGGTGGCTATAACAAGGTGGTGTCTAGCCCAATTTGTGTGTGCCTCGATAATTCCACCGAATATTTTCTACCTCGCACCAACATAGGCGTTGAATAAATAACTACCGAAGGCTTAGGCAGGAAGAAAAATAGTTATTAGTTTGTTGTAGAAAACAAATCATTTGTTACTGGAATCAAAATGAATGTAGAGTATCATATAGCTGATTCCAATTACTTTGGGATTGAGACATTTGATTGATATTGATTATTGAAATGATTTATTCATTCATCTTTTTTAAACTTGACATTTTGTTTATTCCTCTTGTAGCTCTTAACTGCTATATCTACCA-TGATGACCCTAAATTATCCCTGAGAAGACAGATACATATTACATTGTTAATGCTCCATACATATTCTCAGCCTGCTGGAAGGTTCGTGTCTAACTTGTAATTATGCACGAGTCTTGCTGAATCAGTTAACCTAAAGCCTAACTATGTACAAACTAGCAGGTTGTGAGACCTCTTTTACAAGAAAGAACTAAAAAGAAAGTCCAAGTGCTCTCCGGCTCGGGAAAAGATGAACTGTTGAAGGTAAGATGTCTTTTTTCTTTTGAGTGGAAGGATCAAATACACCAGCTGAACTATCACCAAATGTTTATCAAAACACACCTCAACTATTAGTTTTTCCATTATCACACCCAAACCAAGTAGGAAAAGGGAAAAACTTCTAGTTGAGTGTGTGTTTCGATACACAATTAATGATAGTTCAGCTAGAAAGGTAGTTTAGGTATGGAACTCGAAAAGTGGAATTCTTCATTTGTGTTTTTGACCCTTCCAACAATTTTTTTCTTATTATGAGTTATCAAAGGTAAGATGATGTTCTTTAAGTCGATTGCCTTTTATCCGTTGATTCTCTCACTTCAGGAGAGGCTTACTGTTGCAGATGAACTCAATACTATTCTTTGTAGTTTGTAGAATCCATCTTTATTCGCATTAATAATGTTTGGTCATATACCTCGTGTTTCTGAGGAATACTATACTTGACTTCAAATCTAACTAGAATTATCTCTTAATTCTCAATTTGCAGATAATGGATTATGCATCGCTACCACACTTTTGTAAAAGAGAAGGCTCGGGTTCATCTAAACATGGTAGAAATGGTACAAATGATAACTGTTTCTCCTTTGATCACGCTTTTCATCAGCAACTCTATGATTATACTAAGCAACAAGCTCTAGCATTAGAGGCTGTAGCACCAAGCAAAGAAGGATCTGTCCATGTGACCTTACCTGAGCCTGATCCAGATGATGCAAAGATTGCTGAAACAATTGAATC</genome_strand>
        <mrna_strand>CTTATACTAAAAACATAGCAGAATGGAAGAAAAGATCTATACAGGTGATCCAACTAGTTAAGAAACTTATGTTTTTCAAGAGTCTTTTTGGTCTTGTTAATACTTAGATGTGGATGTGGCATTCACCCGAGGCCTGGTGGCTATAACAAGGTGGTGTCTAGCCCAATTTGTGTGTGCCTCGATAATTCCACCGAATATTTTCTACCTCGCACCAACATAGGCGTTGAATAAATAACTACCGAAGGCTTAGGCAGGAAGAAAAATAGTTATTAGTTTGTTGTAGAAAACAAATCATTTGTTACTGGAATCAAAATGAATGTAGAGTATCATATAGCTGATTCCAATTACTTTGGGATTGAGACATTTGATTGATATTGATTATTGAAATGATTTATTCATTCATCTTTTTTAAACTTGACATTTTGTTTATTCCTCTTGTAGCTCTTAACTGCTATATCTACCATTGATGA-CCTAAATTAT-CCTGAGAAGACAGATACATATTACATTGTTAATGCTCCATACATATTCTCAGCCTGCTGGAAG..............................................................................GTTGTGAGACCTCTTTTACAAGAAAGAACTAAAAAGAAAGTCCAAGTGCTCTCCGGCTCGGGAAAAGATGAACTGTTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGGATTATGCATCGCTACCACACTTTTGTAAAAGAGAAGGCTCGGGTTCATCTAAACATGGTAGAAATGGTACAAATGATAACTGTTTCTCCTTTGATCACGCTTTTCATCAGCAACTCTATGATTATACTAAGCAACAAGCTCTAGCATTAGAGGCTGTAGCACCAAGCAAAGAAGGATCTGTCCATGTGACCCTACCTGAGCCTGATCCAAATGATGCAAAGATTGCTGAAACAATTGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E233337" ref_strand="+" ref_description="SGN-E233337 [cLED-9-K3]">
      <seq>ttcaatcacatatccaaatgaatgaataccgtgaccgtataatattgccgtctgcatcaaagaaatttgggcggtatattgggacctgtgttaaggttttggacatgactggtctaaagctttctgcgctaaaccaaattaagctcttaactgctatatctaccattgatgacctaaattatcctgagaagacagatacatattacattgttaatgctccatacatattctcagcctgctggaaggttgtgagacctcttttacaagaaagaactaaaaagaaagtccaagtgctctccggctcgggaaaagatgaactgttgaagataatggattatgcatcgctaccacacttttgtaaaagagaaggctcgggttcatctaaacatggtagaaatggtacaaatgataactgtttctcctttgatcacgcttttcatcagcaactctatgattatactaagcaacaagctctagcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="70028" stop="67227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69728" g_stop="69682" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69681" i_stop="69595" i_length="87">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69594" g_stop="69499" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="143" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69498" i_stop="68440" i_length="1059">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68439" g_stop="68337" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="245" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68336" i_stop="68259" i_length="78">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.558" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68258" g_stop="68178" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="326" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68177" i_stop="67682" i_length="496">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67681" g_stop="67527" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="481" r_length="155" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E233337" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69728" e_stop="69682"/>
          <exon e_start="69594" e_stop="69499"/>
          <exon e_start="68439" e_stop="68337"/>
          <exon e_start="68258" e_stop="68178"/>
          <exon e_start="67681" e_stop="67527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATCACATATCCAAATGAATGAATACCGTGACCGTATAATATTGGTATGTCCTTGTGTTTGTTCATTCAAATAGGAGATAAATACGAAAAAAATATCCTATGATGTTGACTGGCTGATGTTCATGTTACAGCCGTCTGCATCAAAGAAATTTGGGCGGTATATTGGGACCTGTGTTAAGGTTTTGGACATGACTGGTCTAAAGCTTTCTGCGCTAAACCAAATTAAGGTATCTCGTTATTTGTTTGACATTGTAATTATACTTCATCGACCTTCCTACCAAAATCCTACTGTGTAAATCCTTATCATCTTTTTTCTAGTCAACATTCTTCTTGGATGTATAGATTCACTTATTTCGCTGAAAATCTTTGGTTCTGCATTCGTCGTCCACACTAATAGTTCTTGTTAAAGTTTTGAAATGATGTTCAATTGTCACTTTCTCCAAATAGAGATAAAGTTTTAAGTTTTCGGAGTTAAAAAGACTCTTTTGAGTGCATTTGTTCATTCACTAATTACTGCTATTTACAAAATTTGAACTTTTGATTATTGATCATCAATTACTCAAACAACATAAAAATAGCATATATTGGAGCGCCAAGAGAAGTTCTTGGGTGGTACTGGAGATAGAAAGTAACCTGCATCAGACATATAGATATAGAAAGGATATGGATGAAAAAATAGTCACAAGGACGAGAACAACAGGAGTTATAGGCTTATAGCAACTAGAAGCTCAAATGAGATGGTGCAATAATAGTGATTGAAGTGATAAAAGGGGGATGAGTAAAACTAAAATTGCATTGAGAGAAGACATTTCGAAAGATGTATGATATCTCAACATCAATGCACACTTAAACTAAAAACATAGCAGAATGGAAGAAAAGATCTATACAGGTGATCCAACTAGTTAAGAAACTTATGTTTTTCAAGAGTCTTTTTGGTCTTGTTAATACTTAGATGTGGATGTGGCATTCACCCGAGGCCTGGTGGCTATAACAAGGTGGTGTCTAGCCCAATTTGTGTGTGCCTCGATAATTCCACCGAATATTTTCTACCTCGCACCAACATAGGCGTTGAATAAATAACTACCGAAGGCTTAGGCAGGAAGAAAAATAGTTATTAGTTTGTTGTAGAAAACAAATCATTTGTTACTGGAATCAAAATGAATGTAGAGTATCATATAGCTGATTCCAATTACTTTGGGATTGAGACATTTGATTGATATTGATTATTGAAATGATTTATTCATTCATCTTTTTTAAACTTGACATTTTGTTTATTCCTCTTGTAGCTCTTAACTGCTATATCTACCA-TGATGACCCTAAATTATCCCTGAGAAGACAGATACATATTACATTGTTAATGCTCCATACATATTCTCAGCCTGCTGGAAGGTTCGTGTCTAACTTGTAATTATGCACGAGTCTTGCTGAATCAGTTAACCTAAAGCCTAACTATGTACAAACTAGCAGGTTGTGAGACCTCTTTTACAAGAAAGAACTAAAAAGAAAGTCCAAGTGCTCTCCGGCTCGGGAAAAGATGAACTGTTGAAGGTAAGATGTCTTTTTTCTTTTGAGTGGAAGGATCAAATACACCAGCTGAACTATCACCAAATGTTTATCAAAACACACCTCAACTATTAGTTTTTCCATTATCACACCCAAACCAAGTAGGAAAAGGGAAAAACTTCTAGTTGAGTGTGTGTTTCGATACACAATTAATGATAGTTCAGCTAGAAAGGTAGTTTAGGTATGGAACTCGAAAAGTGGAATTCTTCATTTGTGTTTTTGACCCTTCCAACAATTTTTTTCTTATTATGAGTTATCAAAGGTAAGATGATGTTCTTTAAGTCGATTGCCTTTTATCCGTTGATTCTCTCACTTCAGGAGAGGCTTACTGTTGCAGATGAACTCAATACTATTCTTTGTAGTTTGTAGAATCCATCTTTATTCGCATTAATAATGTTTGGTCATATACCTCGTGTTTCTGAGGAATACTATACTTGACTTCAAATCTAACTAGAATTATCTCTTAATTCTCAATTTGCAGATAATGGATTATGCATCGCTACCACACTTTTGTAAAAGAGAAGGCTCGGGTTCATCTAAACATGGTAGAAATGGTACAAATGATAACTGTTTCTCCTTTGATCACGCTTTTCATCAGCAACTCTATGATTATACTAAGCAACAAGCTCTAGCATT</genome_strand>
        <mrna_strand>TTCAATCACATATCCAAATGAATGAATACCGTGACCGTATAATATTG.......................................................................................CCGTCTGCATCAAAGAAATTTGGGCGGTATATTGGGACCTGTGTTAAGGTTTTGGACATGACTGGTCTAAAGCTTTCTGCGCTAAACCAAATTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTAACTGCTATATCTACCATTGATGA-CCTAAATTAT-CCTGAGAAGACAGATACATATTACATTGTTAATGCTCCATACATATTCTCAGCCTGCTGGAAG..............................................................................GTTGTGAGACCTCTTTTACAAGAAAGAACTAAAAAGAAAGTCCAAGTGCTCTCCGGCTCGGGAAAAGATGAACTGTTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGGATTATGCATCGCTACCACACTTTTGTAAAAGAGAAGGCTCGGGTTCATCTAAACATGGTAGAAATGGTACAAATGATAACTGTTTCTCCTTTGATCACGCTTTTCATCAGCAACTCTATGATTATACTAAGCAACAAGCTCTAGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E705891" ref_strand="+" ref_description="SGN-E705891 [FA28BG04]">
      <seq>gtataactgaagatatgattaagcaattgcagacttcaatggatgaaattgctgagccacttcagaaaactttccagaatgtatatcaggggtatcgaaccgagacactggtgaggtttctcaaagctagagatggcagtgtgtctaaagcacacaagatgcttgttgactgtttaaattggaggatagacaatgagatcgatcagatacttgcaaagccaattgtacccactgatttttatagaggagtgagggacactcagcttgtggggatgtctggatatacaagagagggtcttcccgtcgttgctgttggagtaggcctcagcacatacgacaaagcatcgattcactactatattcaatcacatatccaaatgaatgaataccgtgaccgtataatattgccgtctgcatcaaagaaatttgggcggtatattgggacctgtgttaaggttttggacatgactggtctaaagctttctgcgctaaaccaaattaagctcttaactgctatatctaccattgatgacctaaattatcctgagaagacagatacatattacattgttaatgctccatacatattctcagcctgctggaaggttgtgagacctcttttacaagaaagaactaaaaagaaagtccaagtgctctccggctcgggaaaagatgaactgttgaagataatggattatgcatcgctaccacacttttgtaaaagagaaggctcgggttcatctaaacatggtagaaatggtacaaatgataactgtttctcctttgatcacgcttttcatcagcaactctatgattatactaagcaacaagctctagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="72018" stop="67228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71718" g_stop="71671" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71670" i_stop="71569" i_length="102">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71568" g_stop="71540" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="77" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71539" i_stop="70496" i_length="1044">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70495" g_stop="70412" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="161" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70411" i_stop="70312" i_length="100">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.519" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70311" g_stop="70258" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="215" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70257" i_stop="70135" i_length="123">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70134" g_stop="70057" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="293" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70056" i_stop="69925" i_length="132">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69924" g_stop="69871" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="347" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69870" i_stop="69742" i_length="129">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.549" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69741" g_stop="69682" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="407" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="69681" i_stop="69595" i_length="87">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="69594" g_stop="69499" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="503" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="69498" i_stop="68440" i_length="1059">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="68439" g_stop="68337" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="605" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="68336" i_stop="68259" i_length="78">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.558" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="68258" g_stop="68178" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="686" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="68177" i_stop="67682" i_length="496">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="67681" g_stop="67528" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="840" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E705891" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71718" e_stop="71671"/>
          <exon e_start="71568" e_stop="71540"/>
          <exon e_start="70495" e_stop="70412"/>
          <exon e_start="70311" e_stop="70258"/>
          <exon e_start="70134" e_stop="70057"/>
          <exon e_start="69924" e_stop="69871"/>
          <exon e_start="69741" e_stop="69682"/>
          <exon e_start="69594" e_stop="69499"/>
          <exon e_start="68439" e_stop="68337"/>
          <exon e_start="68258" e_stop="68178"/>
          <exon e_start="67681" e_stop="67528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATAACTGAAGATATGATTAAGCAATTGCAGACTTCAATGGATGAAAGTTAGTATCTTTACTACTTATTATGATCTTGCTTGTACATTTCTTTTGAGTCTCAGCTTTTTTGAGTTTGGATCTCTAATTTTGTTGTTGTTGTTGTTGCAGTTGCTGAGCCACTTCAGAAAACTTTCCAGGTTTTGCTTCTAATTAACTCAACTTTATTTAAAATTTTGCTAAAAAAAAAGTTTCTGGATTTGATCTGTCTACTTGTTGTGATTCTTGATTTTGGTTTATTCAACAGTGGAGGTAAGTTGGTCAATGCCAAGTCAAATTTTTTTAGATTTCTTTGTTTGAGGTTTGACAAACTTGAAATTTTAGTAGGTTAGTTGGTTGACTAGCTAAACTTTCACCTTGTTGGTGGGGTCGATTCCCCACCTTGTAAATCTCATACCCCAATTTTCTTTTAGCAAACTCTAGTCTTGGAATGTTAACCAAATTGCTTTAGTTCTGCTTGCTTGGTGTGATTAATTACACAGAAGGTGCAAATGGAAATTTTCCTTGATGCTTTTTTTCTTGTGGTGGGCTAGTTATGAATCAGGATGCAACAATTTGTATTTCGTGGAGATGGATGTTCAAAGGTAGCATCTTGATGCAGAATCTGAAGTCACCTAAATGAAAATTGGTCAAAATGCAGCTAAAACTTTTCATAGATCTATTGTTTTTGAAATAAAACGCCCTTGTTCATATGTTAGAATGTATATGATCTGCAGTTGGAGAATGCTGAGCATAGTTAATCAACGAGTTACTCCGAAGACTTATATCCATAGCTAATGGTCACTGTGATGACAGTCCATCGAAGTTTTTAGCCAAAGATTGGTCTTTTACCTTGATTATAACTCTCTGTGAATAGCCAGTATCTCCCTTTATATTTATATGGGTAAAGAAAGTTACGAGTTCACGTAGCAGCAGGTGATTGCTCATATTAACACTTAGACAAATAGAAGGCTTATTATATCTGCCGTCAAAACTTAAATTAGTGAAGTGGCTGAACAAAATAAGACGAGCTAAGCATCTTGGCATGTGCAATAGTTAGATACTGAATAAAAGCTTGGCTATTTCATTGCTCAATGTTAATTAGAGGTTTTGAGGAATAAAAATAGAGATCCTTATTAGTGATGTTTCGTGAACCTATAACTATGTTATGACCGTACGTATATGATGTCTCAAATTTTGTGCAGAATGTATATCAGGGGTATCGAACCGAGACACTGGTGAGGTTTCTCAAAGCTAGAGATGGCAGTGTGTCTAAAGCACACAAGATGGTAAGTGCATACAGTTTTCATTCACATTTGAAGCTCAATATTGCTTCAGGATGAATATTGCACCGAGGAAATATTCTTAACTGTAATCAGCACTTTGCAGCTTGTTGACTGTTTAAATTGGAGGATAGACAATGAGATCGATCAGATACTTGCAGTAAGTTTTCTCTTATCATAGAATATTTGAATGGATAACCTTTAGTTAAGTCACAAATAGTAAAGAAATGAAGGCGAATTCCACCTTTACTATGTGGCTGATATTTGTCATTTATTGTTGCAGAAGCCAATTGTACCCACTGATTTTTATAGAGGAGTGAGGGACACTCAGCTTGTGGGGATGTCTGGATATACAAGAGAGGTAATACTTTGATCTGATTATATAATTATCATTGATTAGCTCTCTTCTCATTCGGGTTTATGCAACTTTTGGCGTTGTGCTTGGCCAATATAATCTTATTGTGTGGTTTCTACTTGGTTTTAATGTGTGCAGGGTCTTCCCGTCGTTGCTGTTGGAGTAGGCCTCAGCACATACGACAAAGCATCGGTAAGGGTCATTAGGTTGGGTTATTTAGCCCTGTTAACAAGTCAATTCAGCTGCTCAAACATCTTTTTTTTTTTCATTTGTCTCATACAGGCGGCATTAAAATACTGACATAGTGTTTTTCTATTGTAGATTCACTACTATATTCAATCACATATCCAAATGAATGAATACCGTGACCGTATAATATTGGTATGTCCTTGTGTTTGTTCATTCAAATAGGAGATAAATACGAAAAAAATATCCTATGATGTTGACTGGCTGATGTTCATGTTACAGCCGTCTGCATCAAAGAAATTTGGGCGGTATATTGGGACCTGTGTTAAGGTTTTGGACATGACTGGTCTAAAGCTTTCTGCGCTAAACCAAATTAAGGTATCTCGTTATTTGTTTGACATTGTAATTATACTTCATCGACCTTCCTACCAAAATCCTACTGTGTAAATCCTTATCATCTTTTTTCTAGTCAACATTCTTCTTGGATGTATAGATTCACTTATTTCGCTGAAAATCTTTGGTTCTGCATTCGTCGTCCACACTAATAGTTCTTGTTAAAGTTTTGAAATGATGTTCAATTGTCACTTTCTCCAAATAGAGATAAAGTTTTAAGTTTTCGGAGTTAAAAAGACTCTTTTGAGTGCATTTGTTCATTCACTAATTACTGCTATTTACAAAATTTGAACTTTTGATTATTGATCATCAATTACTCAAACAACATAAAAATAGCATATATTGGAGCGCCAAGAGAAGTTCTTGGGTGGTACTGGAGATAGAAAGTAACCTGCATCAGACATATAGATATAGAAAGGATATGGATGAAAAAATAGTCACAAGGACGAGAACAACAGGAGTTATAGGCTTATAGCAACTAGAAGCTCAAATGAGATGGTGCAATAATAGTGATTGAAGTGATAAAAGGGGGATGAGTAAAACTAAAATTGCATTGAGAGAAGACATTTCGAAAGATGTATGATATCTCAACATCAATGCACACTTAAACTAAAAACATAGCAGAATGGAAGAAAAGATCTATACAGGTGATCCAACTAGTTAAGAAACTTATGTTTTTCAAGAGTCTTTTTGGTCTTGTTAATACTTAGATGTGGATGTGGCATTCACCCGAGGCCTGGTGGCTATAACAAGGTGGTGTCTAGCCCAATTTGTGTGTGCCTCGATAATTCCACCGAATATTTTCTACCTCGCACCAACATAGGCGTTGAATAAATAACTACCGAAGGCTTAGGCAGGAAGAAAAATAGTTATTAGTTTGTTGTAGAAAACAAATCATTTGTTACTGGAATCAAAATGAATGTAGAGTATCATATAGCTGATTCCAATTACTTTGGGATTGAGACATTTGATTGATATTGATTATTGAAATGATTTATTCATTCATCTTTTTTAAACTTGACATTTTGTTTATTCCTCTTGTAGCTCTTAACTGCTATATCTACCA-TGATGACCCTAAATTATCCCTGAGAAGACAGATACATATTACATTGTTAATGCTCCATACATATTCTCAGCCTGCTGGAAGGTTCGTGTCTAACTTGTAATTATGCACGAGTCTTGCTGAATCAGTTAACCTAAAGCCTAACTATGTACAAACTAGCAGGTTGTGAGACCTCTTTTACAAGAAAGAACTAAAAAGAAAGTCCAAGTGCTCTCCGGCTCGGGAAAAGATGAACTGTTGAAGGTAAGATGTCTTTTTTCTTTTGAGTGGAAGGATCAAATACACCAGCTGAACTATCACCAAATGTTTATCAAAACACACCTCAACTATTAGTTTTTCCATTATCACACCCAAACCAAGTAGGAAAAGGGAAAAACTTCTAGTTGAGTGTGTGTTTCGATACACAATTAATGATAGTTCAGCTAGAAAGGTAGTTTAGGTATGGAACTCGAAAAGTGGAATTCTTCATTTGTGTTTTTGACCCTTCCAACAATTTTTTTCTTATTATGAGTTATCAAAGGTAAGATGATGTTCTTTAAGTCGATTGCCTTTTATCCGTTGATTCTCTCACTTCAGGAGAGGCTTACTGTTGCAGATGAACTCAATACTATTCTTTGTAGTTTGTAGAATCCATCTTTATTCGCATTAATAATGTTTGGTCATATACCTCGTGTTTCTGAGGAATACTATACTTGACTTCAAATCTAACTAGAATTATCTCTTAATTCTCAATTTGCAGATAATGGATTATGCATCGCTACCACACTTTTGTAAAAGAGAAGGCTCGGGTTCATCTAAACATGGTAGAAATGGTACAAATGATAACTGTTTCTCCTTTGATCACGCTTTTCATCAGCAACTCTATGATTATACTAAGCAACAAGCTCTAGCAT</genome_strand>
        <mrna_strand>GTATAACTGAAGATATGATTAAGCAATTGCAGACTTCAATGGATGAAA......................................................................................................TTGCTGAGCCACTTCAGAAAACTTTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTATATCAGGGGTATCGAACCGAGACACTGGTGAGGTTTCTCAAAGCTAGAGATGGCAGTGTGTCTAAAGCACACAAGATG....................................................................................................CTTGTTGACTGTTTAAATTGGAGGATAGACAATGAGATCGATCAGATACTTGCA...........................................................................................................................AAGCCAATTGTACCCACTGATTTTTATAGAGGAGTGAGGGACACTCAGCTTGTGGGGATGTCTGGATATACAAGAGAG....................................................................................................................................GGTCTTCCCGTCGTTGCTGTTGGAGTAGGCCTCAGCACATACGACAAAGCATCG.................................................................................................................................ATTCACTACTATATTCAATCACATATCCAAATGAATGAATACCGTGACCGTATAATATTG.......................................................................................CCGTCTGCATCAAAGAAATTTGGGCGGTATATTGGGACCTGTGTTAAGGTTTTGGACATGACTGGTCTAAAGCTTTCTGCGCTAAACCAAATTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTAACTGCTATATCTACCATTGATGA-CCTAAATTAT-CCTGAGAAGACAGATACATATTACATTGTTAATGCTCCATACATATTCTCAGCCTGCTGGAAG..............................................................................GTTGTGAGACCTCTTTTACAAGAAAGAACTAAAAAGAAAGTCCAAGTGCTCTCCGGCTCGGGAAAAGATGAACTGTTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGGATTATGCATCGCTACCACACTTTTGTAAAAGAGAAGGCTCGGGTTCATCTAAACATGGTAGAAATGGTACAAATGATAACTGTTTCTCCTTTGATCACGCTTTTCATCAGCAACTCTATGATTATACTAAGCAACAAGCTCTAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E702022" ref_strand="+" ref_description="SGN-E702022 [FA17CD04]">
      <seq>gttttttgataattttaggaggtgggtgtgaatcttttttgggtaaatttatagtgggatcaagaatggtgtgtataactgaagatatgattaagcaattgcagacttcaatggatgaaattgctgagccacttcagaaaactttccagaatgtatatcaggggtatcgaaccgagacactggtgaggtttctcaaagctagagatggcagtgtgtctaaagcacacaagatgcttgttgactgtttaaattggaggatagacaatgagatcgatcagatacttgcaaagccaattgtacccactgatttttatagaggagtgagggacactcagcttgtggggatgtctggatatacaagagagggtcttcccgtcgttgctgttggagtaggcctcagcacatacgacaaagcatcgattcactactatattcaatcacatatccaaatgaatgaataccgtgaccgtataatattgccgtctgcatcaaagaaatttgggcggtatattgggacctgtgttaaggttttggacatgactggtctaaagctttctgcgctaaaccaaattaagctcttaactgctatatctaccattgatgacctaaattatcctgagaagacagatacatattacattgttaatgctccatacatattctcagcctgctggaaggttgtgagacctcttttacaagaaagaactaaaaagaaagtccaagtgctctccggctcgggaaaagatgaactgttgaagataatggattatgcatcgctaccacacttttgtaaaagagaaggctcgggttcatctaaacatggtagaaatggtacaaatgataactgtttctcctttgatcacgcttttcatcagcaactctatgattatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="72090" stop="67247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71790" g_stop="71671" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71670" i_stop="71569" i_length="102">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71568" g_stop="71540" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="149" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71539" i_stop="70496" i_length="1044">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70495" g_stop="70412" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="233" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70411" i_stop="70312" i_length="100">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.519" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70311" g_stop="70258" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="287" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70257" i_stop="70135" i_length="123">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70134" g_stop="70057" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="365" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70056" i_stop="69925" i_length="132">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69924" g_stop="69871" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="419" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69870" i_stop="69742" i_length="129">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.549" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69741" g_stop="69682" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="479" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="69681" i_stop="69595" i_length="87">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="69594" g_stop="69499" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="575" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="69498" i_stop="68440" i_length="1059">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="68439" g_stop="68337" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="677" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="68336" i_stop="68259" i_length="78">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.558" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="68258" g_stop="68178" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="758" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="68177" i_stop="67682" i_length="496">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="67681" g_stop="67547" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="893" r_length="135" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E702022" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>894</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71790" e_stop="71671"/>
          <exon e_start="71568" e_stop="71540"/>
          <exon e_start="70495" e_stop="70412"/>
          <exon e_start="70311" e_stop="70258"/>
          <exon e_start="70134" e_stop="70057"/>
          <exon e_start="69924" e_stop="69871"/>
          <exon e_start="69741" e_stop="69682"/>
          <exon e_start="69594" e_stop="69499"/>
          <exon e_start="68439" e_stop="68337"/>
          <exon e_start="68258" e_stop="68178"/>
          <exon e_start="67681" e_stop="67547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTTGATAATTTTAGGAGGTGGGTGTGAATCTTTTTTGGGTAAATTTATAGTGGGATCAAGAATGGTGTGTATAACTGAAGATATGATTAAGCAATTGCAGACTTCAATGGATGAAAGTTAGTATCTTTACTACTTATTATGATCTTGCTTGTACATTTCTTTTGAGTCTCAGCTTTTTTGAGTTTGGATCTCTAATTTTGTTGTTGTTGTTGTTGCAGTTGCTGAGCCACTTCAGAAAACTTTCCAGGTTTTGCTTCTAATTAACTCAACTTTATTTAAAATTTTGCTAAAAAAAAAGTTTCTGGATTTGATCTGTCTACTTGTTGTGATTCTTGATTTTGGTTTATTCAACAGTGGAGGTAAGTTGGTCAATGCCAAGTCAAATTTTTTTAGATTTCTTTGTTTGAGGTTTGACAAACTTGAAATTTTAGTAGGTTAGTTGGTTGACTAGCTAAACTTTCACCTTGTTGGTGGGGTCGATTCCCCACCTTGTAAATCTCATACCCCAATTTTCTTTTAGCAAACTCTAGTCTTGGAATGTTAACCAAATTGCTTTAGTTCTGCTTGCTTGGTGTGATTAATTACACAGAAGGTGCAAATGGAAATTTTCCTTGATGCTTTTTTTCTTGTGGTGGGCTAGTTATGAATCAGGATGCAACAATTTGTATTTCGTGGAGATGGATGTTCAAAGGTAGCATCTTGATGCAGAATCTGAAGTCACCTAAATGAAAATTGGTCAAAATGCAGCTAAAACTTTTCATAGATCTATTGTTTTTGAAATAAAACGCCCTTGTTCATATGTTAGAATGTATATGATCTGCAGTTGGAGAATGCTGAGCATAGTTAATCAACGAGTTACTCCGAAGACTTATATCCATAGCTAATGGTCACTGTGATGACAGTCCATCGAAGTTTTTAGCCAAAGATTGGTCTTTTACCTTGATTATAACTCTCTGTGAATAGCCAGTATCTCCCTTTATATTTATATGGGTAAAGAAAGTTACGAGTTCACGTAGCAGCAGGTGATTGCTCATATTAACACTTAGACAAATAGAAGGCTTATTATATCTGCCGTCAAAACTTAAATTAGTGAAGTGGCTGAACAAAATAAGACGAGCTAAGCATCTTGGCATGTGCAATAGTTAGATACTGAATAAAAGCTTGGCTATTTCATTGCTCAATGTTAATTAGAGGTTTTGAGGAATAAAAATAGAGATCCTTATTAGTGATGTTTCGTGAACCTATAACTATGTTATGACCGTACGTATATGATGTCTCAAATTTTGTGCAGAATGTATATCAGGGGTATCGAACCGAGACACTGGTGAGGTTTCTCAAAGCTAGAGATGGCAGTGTGTCTAAAGCACACAAGATGGTAAGTGCATACAGTTTTCATTCACATTTGAAGCTCAATATTGCTTCAGGATGAATATTGCACCGAGGAAATATTCTTAACTGTAATCAGCACTTTGCAGCTTGTTGACTGTTTAAATTGGAGGATAGACAATGAGATCGATCAGATACTTGCAGTAAGTTTTCTCTTATCATAGAATATTTGAATGGATAACCTTTAGTTAAGTCACAAATAGTAAAGAAATGAAGGCGAATTCCACCTTTACTATGTGGCTGATATTTGTCATTTATTGTTGCAGAAGCCAATTGTACCCACTGATTTTTATAGAGGAGTGAGGGACACTCAGCTTGTGGGGATGTCTGGATATACAAGAGAGGTAATACTTTGATCTGATTATATAATTATCATTGATTAGCTCTCTTCTCATTCGGGTTTATGCAACTTTTGGCGTTGTGCTTGGCCAATATAATCTTATTGTGTGGTTTCTACTTGGTTTTAATGTGTGCAGGGTCTTCCCGTCGTTGCTGTTGGAGTAGGCCTCAGCACATACGACAAAGCATCGGTAAGGGTCATTAGGTTGGGTTATTTAGCCCTGTTAACAAGTCAATTCAGCTGCTCAAACATCTTTTTTTTTTTCATTTGTCTCATACAGGCGGCATTAAAATACTGACATAGTGTTTTTCTATTGTAGATTCACTACTATATTCAATCACATATCCAAATGAATGAATACCGTGACCGTATAATATTGGTATGTCCTTGTGTTTGTTCATTCAAATAGGAGATAAATACGAAAAAAATATCCTATGATGTTGACTGGCTGATGTTCATGTTACAGCCGTCTGCATCAAAGAAATTTGGGCGGTATATTGGGACCTGTGTTAAGGTTTTGGACATGACTGGTCTAAAGCTTTCTGCGCTAAACCAAATTAAGGTATCTCGTTATTTGTTTGACATTGTAATTATACTTCATCGACCTTCCTACCAAAATCCTACTGTGTAAATCCTTATCATCTTTTTTCTAGTCAACATTCTTCTTGGATGTATAGATTCACTTATTTCGCTGAAAATCTTTGGTTCTGCATTCGTCGTCCACACTAATAGTTCTTGTTAAAGTTTTGAAATGATGTTCAATTGTCACTTTCTCCAAATAGAGATAAAGTTTTAAGTTTTCGGAGTTAAAAAGACTCTTTTGAGTGCATTTGTTCATTCACTAATTACTGCTATTTACAAAATTTGAACTTTTGATTATTGATCATCAATTACTCAAACAACATAAAAATAGCATATATTGGAGCGCCAAGAGAAGTTCTTGGGTGGTACTGGAGATAGAAAGTAACCTGCATCAGACATATAGATATAGAAAGGATATGGATGAAAAAATAGTCACAAGGACGAGAACAACAGGAGTTATAGGCTTATAGCAACTAGAAGCTCAAATGAGATGGTGCAATAATAGTGATTGAAGTGATAAAAGGGGGATGAGTAAAACTAAAATTGCATTGAGAGAAGACATTTCGAAAGATGTATGATATCTCAACATCAATGCACACTTAAACTAAAAACATAGCAGAATGGAAGAAAAGATCTATACAGGTGATCCAACTAGTTAAGAAACTTATGTTTTTCAAGAGTCTTTTTGGTCTTGTTAATACTTAGATGTGGATGTGGCATTCACCCGAGGCCTGGTGGCTATAACAAGGTGGTGTCTAGCCCAATTTGTGTGTGCCTCGATAATTCCACCGAATATTTTCTACCTCGCACCAACATAGGCGTTGAATAAATAACTACCGAAGGCTTAGGCAGGAAGAAAAATAGTTATTAGTTTGTTGTAGAAAACAAATCATTTGTTACTGGAATCAAAATGAATGTAGAGTATCATATAGCTGATTCCAATTACTTTGGGATTGAGACATTTGATTGATATTGATTATTGAAATGATTTATTCATTCATCTTTTTTAAACTTGACATTTTGTTTATTCCTCTTGTAGCTCTTAACTGCTATATCTACCA-TGATGACCCTAAATTATCCCTGAGAAGACAGATACATATTACATTGTTAATGCTCCATACATATTCTCAGCCTGCTGGAAGGTTCGTGTCTAACTTGTAATTATGCACGAGTCTTGCTGAATCAGTTAACCTAAAGCCTAACTATGTACAAACTAGCAGGTTGTGAGACCTCTTTTACAAGAAAGAACTAAAAAGAAAGTCCAAGTGCTCTCCGGCTCGGGAAAAGATGAACTGTTGAAGGTAAGATGTCTTTTTTCTTTTGAGTGGAAGGATCAAATACACCAGCTGAACTATCACCAAATGTTTATCAAAACACACCTCAACTATTAGTTTTTCCATTATCACACCCAAACCAAGTAGGAAAAGGGAAAAACTTCTAGTTGAGTGTGTGTTTCGATACACAATTAATGATAGTTCAGCTAGAAAGGTAGTTTAGGTATGGAACTCGAAAAGTGGAATTCTTCATTTGTGTTTTTGACCCTTCCAACAATTTTTTTCTTATTATGAGTTATCAAAGGTAAGATGATGTTCTTTAAGTCGATTGCCTTTTATCCGTTGATTCTCTCACTTCAGGAGAGGCTTACTGTTGCAGATGAACTCAATACTATTCTTTGTAGTTTGTAGAATCCATCTTTATTCGCATTAATAATGTTTGGTCATATACCTCGTGTTTCTGAGGAATACTATACTTGACTTCAAATCTAACTAGAATTATCTCTTAATTCTCAATTTGCAGATAATGGATTATGCATCGCTACCACACTTTTGTAAAAGAGAAGGCTCGGGTTCATCTAAACATGGTAGAAATGGTACAAATGATAACTGTTTCTCCTTTGATCACGCTTTTCATCAGCAACTCTATGATTATACT</genome_strand>
        <mrna_strand>GTTTTTTGATAATTTTAGGAGGTGGGTGTGAATCTTTTTTGGGTAAATTTATAGTGGGATCAAGAATGGTGTGTATAACTGAAGATATGATTAAGCAATTGCAGACTTCAATGGATGAAA......................................................................................................TTGCTGAGCCACTTCAGAAAACTTTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTATATCAGGGGTATCGAACCGAGACACTGGTGAGGTTTCTCAAAGCTAGAGATGGCAGTGTGTCTAAAGCACACAAGATG....................................................................................................CTTGTTGACTGTTTAAATTGGAGGATAGACAATGAGATCGATCAGATACTTGCA...........................................................................................................................AAGCCAATTGTACCCACTGATTTTTATAGAGGAGTGAGGGACACTCAGCTTGTGGGGATGTCTGGATATACAAGAGAG....................................................................................................................................GGTCTTCCCGTCGTTGCTGTTGGAGTAGGCCTCAGCACATACGACAAAGCATCG.................................................................................................................................ATTCACTACTATATTCAATCACATATCCAAATGAATGAATACCGTGACCGTATAATATTG.......................................................................................CCGTCTGCATCAAAGAAATTTGGGCGGTATATTGGGACCTGTGTTAAGGTTTTGGACATGACTGGTCTAAAGCTTTCTGCGCTAAACCAAATTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTAACTGCTATATCTACCATTGATGA-CCTAAATTAT-CCTGAGAAGACAGATACATATTACATTGTTAATGCTCCATACATATTCTCAGCCTGCTGGAAG..............................................................................GTTGTGAGACCTCTTTTACAAGAAAGAACTAAAAAGAAAGTCCAAGTGCTCTCCGGCTCGGGAAAAGATGAACTGTTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGGATTATGCATCGCTACCACACTTTTGTAAAAGAGAAGGCTCGGGTTCATCTAAACATGGTAGAAATGGTACAAATGATAACTGTTTCTCCTTTGATCACGCTTTTCATCAGCAACTCTATGATTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E311752" ref_strand="+" ref_description="SGN-E311752 [cLEZ-9-C24]">
      <seq>aagacagatacatattacattgttaatgctccatacatattctcagcctgctggaaggttgtgagacctcttttacaagaaagaactaaaaagaaagtccaagtgctctccggctcgggaaaagatgaactgttgaaggtaagatgtcttttttcttttgagtggaaggatcaaatacaccagctgaactatcaccaaatgtttatcaaaacacacctcaactattagtttttccattatcacacccaaaccaagtaggaaaagggaaaaacttctagttgagtgtgtgtttcgatacacaattaatgatagttcagctagaaaggtagtttaggtatggaactcgaaaagtggaattcttcatttgtgtttttgacccttccaacaatttttttcttattatgagttatcaaaggtaagatgatgttctttaagtcgattgccttttatccgttgattctctcacttcaggagaggcttactgttgcagatgaactcaatactattctttgtagtttgtagaatccatctgtattcgcattaataatgtttggtcatatacctcgtgtttctgaggaatactatacttgacttcaaatctaactagaattatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="68693" stop="67401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68393" g_stop="68337" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68336" i_stop="68259" i_length="78">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.558" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68258" g_stop="67701" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="615" r_length="558" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E311752" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68393" e_stop="68337"/>
          <exon e_start="68258" e_stop="67701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACAGATACATATTACATTGTTAATGCTCCATACATATTCTCAGCCTGCTGGAAGGTTCGTGTCTAACTTGTAATTATGCACGAGTCTTGCTGAATCAGTTAACCTAAAGCCTAACTATGTACAAACTAGCAGGTTGTGAGACCTCTTTTACAAGAAAGAACTAAAAAGAAAGTCCAAGTGCTCTCCGGCTCGGGAAAAGATGAACTGTTGAAGGTAAGATGTCTTTTTTCTTTTGAGTGGAAGGATCAAATACACCAGCTGAACTATCACCAAATGTTTATCAAAACACACCTCAACTATTAGTTTTTCCATTATCACACCCAAACCAAGTAGGAAAAGGGAAAAACTTCTAGTTGAGTGTGTGTTTCGATACACAATTAATGATAGTTCAGCTAGAAAGGTAGTTTAGGTATGGAACTCGAAAAGTGGAATTCTTCATTTGTGTTTTTGACCCTTCCAACAATTTTTTTCTTATTATGAGTTATCAAAGGTAAGATGATGTTCTTTAAGTCGATTGCCTTTTATCCGTTGATTCTCTCACTTCAGGAGAGGCTTACTGTTGCAGATGAACTCAATACTATTCTTTGTAGTTTGTAGAATCCATCTTTATTCGCATTAATAATGTTTGGTCATATACCTCGTGTTTCTGAGGAATACTATACTTGACTTCAAATCTAACTAGAATTATCT</genome_strand>
        <mrna_strand>AAGACAGATACATATTACATTGTTAATGCTCCATACATATTCTCAGCCTGCTGGAAG..............................................................................GTTGTGAGACCTCTTTTACAAGAAAGAACTAAAAAGAAAGTCCAAGTGCTCTCCGGCTCGGGAAAAGATGAACTGTTGAAGGTAAGATGTCTTTTTTCTTTTGAGTGGAAGGATCAAATACACCAGCTGAACTATCACCAAATGTTTATCAAAACACACCTCAACTATTAGTTTTTCCATTATCACACCCAAACCAAGTAGGAAAAGGGAAAAACTTCTAGTTGAGTGTGTGTTTCGATACACAATTAATGATAGTTCAGCTAGAAAGGTAGTTTAGGTATGGAACTCGAAAAGTGGAATTCTTCATTTGTGTTTTTGACCCTTCCAACAATTTTTTTCTTATTATGAGTTATCAAAGGTAAGATGATGTTCTTTAAGTCGATTGCCTTTTATCCGTTGATTCTCTCACTTCAGGAGAGGCTTACTGTTGCAGATGAACTCAATACTATTCTTTGTAGTTTGTAGAATCCATCTGTATTCGCATTAATAATGTTTGGTCATATACCTCGTGTTTCTGAGGAATACTATACTTGACTTCAAATCTAACTAGAATTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E348017" ref_strand="+" ref_description="SGN-E348017 [cTOF-31-K21]">
      <seq>gggaaaaagcaagattttgaggttttttgataattttaggaggtgggtgtgaatcttttttgggtaaatttatagtgggatcaagaatggtgtgtataactgaagatatgattaagcaattgcagacttcaatggatgaaattgctgagccacttcagaaaactttccagaatgtatatcaggggtatcgaaccgagacactggtgaggtttctcaaagctagagatggcagtgtgtctaaagcacacaagatgcttgttgactgtttaaattggaggatagacaatgagatcgatcagatacttgcaaagccaattgtacccactgatttttatagaggagtgagggacactcagcttgtggggatgtctggatatacaagagagggtcttcccgtcgttgctgttggagtaggcctcagcacatacgacaaagcatcgattcactactatattcaatcacatatccaaatgaatgaataccgtgaccgtataatattgccgtctgcatcaaagaaatttgggcggtatattgggacctgtgttaaggttttggacatgactggtctaaagctttctgcgctaaaccaaattaagctcttaactgctatatctaccattgatgacctaaattatcctgagaagacagatacatattacattgttaatgctccatacatattctcagcctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="72111" stop="68042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71811" g_stop="71671" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71670" i_stop="71569" i_length="102">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71568" g_stop="71540" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="170" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71539" i_stop="70496" i_length="1044">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70495" g_stop="70412" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="254" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70411" i_stop="70312" i_length="100">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.519" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70311" g_stop="70258" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="308" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70257" i_stop="70135" i_length="123">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70134" g_stop="70057" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="386" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70056" i_stop="69925" i_length="132">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69924" g_stop="69871" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="440" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69870" i_stop="69742" i_length="129">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.549" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69741" g_stop="69682" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="500" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="69681" i_stop="69595" i_length="87">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="69594" g_stop="69499" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="596" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="69498" i_stop="68440" i_length="1059">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="68439" g_stop="68342" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="693" r_length="97" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E348017" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71811" e_stop="71671"/>
          <exon e_start="71568" e_stop="71540"/>
          <exon e_start="70495" e_stop="70412"/>
          <exon e_start="70311" e_stop="70258"/>
          <exon e_start="70134" e_stop="70057"/>
          <exon e_start="69924" e_stop="69871"/>
          <exon e_start="69741" e_stop="69682"/>
          <exon e_start="69594" e_stop="69499"/>
          <exon e_start="68439" e_stop="68342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAAAGCAAGATTTTGAGGTTTTTTGATAATTTTAGGAGGTGGGTGTGAATCTTTTTTGGGTAAATTTATAGTGGGATCAAGAATGGTGTGTATAACTGAAGATATGATTAAGCAATTGCAGACTTCAATGGATGAAAGTTAGTATCTTTACTACTTATTATGATCTTGCTTGTACATTTCTTTTGAGTCTCAGCTTTTTTGAGTTTGGATCTCTAATTTTGTTGTTGTTGTTGTTGCAGTTGCTGAGCCACTTCAGAAAACTTTCCAGGTTTTGCTTCTAATTAACTCAACTTTATTTAAAATTTTGCTAAAAAAAAAGTTTCTGGATTTGATCTGTCTACTTGTTGTGATTCTTGATTTTGGTTTATTCAACAGTGGAGGTAAGTTGGTCAATGCCAAGTCAAATTTTTTTAGATTTCTTTGTTTGAGGTTTGACAAACTTGAAATTTTAGTAGGTTAGTTGGTTGACTAGCTAAACTTTCACCTTGTTGGTGGGGTCGATTCCCCACCTTGTAAATCTCATACCCCAATTTTCTTTTAGCAAACTCTAGTCTTGGAATGTTAACCAAATTGCTTTAGTTCTGCTTGCTTGGTGTGATTAATTACACAGAAGGTGCAAATGGAAATTTTCCTTGATGCTTTTTTTCTTGTGGTGGGCTAGTTATGAATCAGGATGCAACAATTTGTATTTCGTGGAGATGGATGTTCAAAGGTAGCATCTTGATGCAGAATCTGAAGTCACCTAAATGAAAATTGGTCAAAATGCAGCTAAAACTTTTCATAGATCTATTGTTTTTGAAATAAAACGCCCTTGTTCATATGTTAGAATGTATATGATCTGCAGTTGGAGAATGCTGAGCATAGTTAATCAACGAGTTACTCCGAAGACTTATATCCATAGCTAATGGTCACTGTGATGACAGTCCATCGAAGTTTTTAGCCAAAGATTGGTCTTTTACCTTGATTATAACTCTCTGTGAATAGCCAGTATCTCCCTTTATATTTATATGGGTAAAGAAAGTTACGAGTTCACGTAGCAGCAGGTGATTGCTCATATTAACACTTAGACAAATAGAAGGCTTATTATATCTGCCGTCAAAACTTAAATTAGTGAAGTGGCTGAACAAAATAAGACGAGCTAAGCATCTTGGCATGTGCAATAGTTAGATACTGAATAAAAGCTTGGCTATTTCATTGCTCAATGTTAATTAGAGGTTTTGAGGAATAAAAATAGAGATCCTTATTAGTGATGTTTCGTGAACCTATAACTATGTTATGACCGTACGTATATGATGTCTCAAATTTTGTGCAGAATGTATATCAGGGGTATCGAACCGAGACACTGGTGAGGTTTCTCAAAGCTAGAGATGGCAGTGTGTCTAAAGCACACAAGATGGTAAGTGCATACAGTTTTCATTCACATTTGAAGCTCAATATTGCTTCAGGATGAATATTGCACCGAGGAAATATTCTTAACTGTAATCAGCACTTTGCAGCTTGTTGACTGTTTAAATTGGAGGATAGACAATGAGATCGATCAGATACTTGCAGTAAGTTTTCTCTTATCATAGAATATTTGAATGGATAACCTTTAGTTAAGTCACAAATAGTAAAGAAATGAAGGCGAATTCCACCTTTACTATGTGGCTGATATTTGTCATTTATTGTTGCAGAAGCCAATTGTACCCACTGATTTTTATAGAGGAGTGAGGGACACTCAGCTTGTGGGGATGTCTGGATATACAAGAGAGGTAATACTTTGATCTGATTATATAATTATCATTGATTAGCTCTCTTCTCATTCGGGTTTATGCAACTTTTGGCGTTGTGCTTGGCCAATATAATCTTATTGTGTGGTTTCTACTTGGTTTTAATGTGTGCAGGGTCTTCCCGTCGTTGCTGTTGGAGTAGGCCTCAGCACATACGACAAAGCATCGGTAAGGGTCATTAGGTTGGGTTATTTAGCCCTGTTAACAAGTCAATTCAGCTGCTCAAACATCTTTTTTTTTTTCATTTGTCTCATACAGGCGGCATTAAAATACTGACATAGTGTTTTTCTATTGTAGATTCACTACTATATTCAATCACATATCCAAATGAATGAATACCGTGACCGTATAATATTGGTATGTCCTTGTGTTTGTTCATTCAAATAGGAGATAAATACGAAAAAAATATCCTATGATGTTGACTGGCTGATGTTCATGTTACAGCCGTCTGCATCAAAGAAATTTGGGCGGTATATTGGGACCTGTGTTAAGGTTTTGGACATGACTGGTCTAAAGCTTTCTGCGCTAAACCAAATTAAGGTATCTCGTTATTTGTTTGACATTGTAATTATACTTCATCGACCTTCCTACCAAAATCCTACTGTGTAAATCCTTATCATCTTTTTTCTAGTCAACATTCTTCTTGGATGTATAGATTCACTTATTTCGCTGAAAATCTTTGGTTCTGCATTCGTCGTCCACACTAATAGTTCTTGTTAAAGTTTTGAAATGATGTTCAATTGTCACTTTCTCCAAATAGAGATAAAGTTTTAAGTTTTCGGAGTTAAAAAGACTCTTTTGAGTGCATTTGTTCATTCACTAATTACTGCTATTTACAAAATTTGAACTTTTGATTATTGATCATCAATTACTCAAACAACATAAAAATAGCATATATTGGAGCGCCAAGAGAAGTTCTTGGGTGGTACTGGAGATAGAAAGTAACCTGCATCAGACATATAGATATAGAAAGGATATGGATGAAAAAATAGTCACAAGGACGAGAACAACAGGAGTTATAGGCTTATAGCAACTAGAAGCTCAAATGAGATGGTGCAATAATAGTGATTGAAGTGATAAAAGGGGGATGAGTAAAACTAAAATTGCATTGAGAGAAGACATTTCGAAAGATGTATGATATCTCAACATCAATGCACACTTAAACTAAAAACATAGCAGAATGGAAGAAAAGATCTATACAGGTGATCCAACTAGTTAAGAAACTTATGTTTTTCAAGAGTCTTTTTGGTCTTGTTAATACTTAGATGTGGATGTGGCATTCACCCGAGGCCTGGTGGCTATAACAAGGTGGTGTCTAGCCCAATTTGTGTGTGCCTCGATAATTCCACCGAATATTTTCTACCTCGCACCAACATAGGCGTTGAATAAATAACTACCGAAGGCTTAGGCAGGAAGAAAAATAGTTATTAGTTTGTTGTAGAAAACAAATCATTTGTTACTGGAATCAAAATGAATGTAGAGTATCATATAGCTGATTCCAATTACTTTGGGATTGAGACATTTGATTGATATTGATTATTGAAATGATTTATTCATTCATCTTTTTTAAACTTGACATTTTGTTTATTCCTCTTGTAGCTCTTAACTGCTATATCTACCA-TGATGACCCTAAATTATCCCTGAGAAGACAGATACATATTACATTGTTAATGCTCCATACATATTCTCAGCCTGCT</genome_strand>
        <mrna_strand>GGGAAAAAGCAAGATTTTGAGGTTTTTTGATAATTTTAGGAGGTGGGTGTGAATCTTTTTTGGGTAAATTTATAGTGGGATCAAGAATGGTGTGTATAACTGAAGATATGATTAAGCAATTGCAGACTTCAATGGATGAAA......................................................................................................TTGCTGAGCCACTTCAGAAAACTTTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTATATCAGGGGTATCGAACCGAGACACTGGTGAGGTTTCTCAAAGCTAGAGATGGCAGTGTGTCTAAAGCACACAAGATG....................................................................................................CTTGTTGACTGTTTAAATTGGAGGATAGACAATGAGATCGATCAGATACTTGCA...........................................................................................................................AAGCCAATTGTACCCACTGATTTTTATAGAGGAGTGAGGGACACTCAGCTTGTGGGGATGTCTGGATATACAAGAGAG....................................................................................................................................GGTCTTCCCGTCGTTGCTGTTGGAGTAGGCCTCAGCACATACGACAAAGCATCG.................................................................................................................................ATTCACTACTATATTCAATCACATATCCAAATGAATGAATACCGTGACCGTATAATATTG.......................................................................................CCGTCTGCATCAAAGAAATTTGGGCGGTATATTGGGACCTGTGTTAAGGTTTTGGACATGACTGGTCTAAAGCTTTCTGCGCTAAACCAAATTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTAACTGCTATATCTACCATTGATGA-CCTAAATTAT-CCTGAGAAGACAGATACATATTACATTGTTAATGCTCCATACATATTCTCAGCCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E300946" ref_strand="+" ref_description="SGN-E300946 [cLEW-8-G18]">
      <seq>tgagatcgatcagatacttgcaaagccaattgtacccactgatttttatagaggagtgagggacactcagcttgtggggatgtctggatatacaagagagggtcttcccgtcgttgctgttggagtaggcctcagcacatacgacaaagcatcgattcactactatattcaatcacatatccaaatgaatgaataccgtgaccgtataatattgccgcctgcatcaaagaaatttgggcggtatattgggacctgtgttaaggttttggacatgactggtctaaagctttctgcgctaaaccaaattaacgtatctcgttatttgtttgacattgtaattatacttcatcgaccttcctaccaaaatcctactgtgtaaatccttatcatcttttttctagtcaacattcttcttggatgtatagattcacttatttcgctgaaaatctttggttctgcattcgtcgtccacactaatagttcttgttaaagttttgaaatgatgttcaattgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="70579" stop="68993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70279" g_stop="70258" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70257" i_stop="70135" i_length="123">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70134" g_stop="70057" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="100" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70056" i_stop="69925" i_length="132">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69924" g_stop="69871" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="154" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69870" i_stop="69742" i_length="129">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.549" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69741" g_stop="69682" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="214" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69681" i_stop="69595" i_length="87">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69594" g_stop="69293" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="516" r_length="302" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E300946" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70279" e_stop="70258"/>
          <exon e_start="70134" e_stop="70057"/>
          <exon e_start="69924" e_stop="69871"/>
          <exon e_start="69741" e_stop="69682"/>
          <exon e_start="69594" e_stop="69293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGATCGATCAGATACTTGCAGTAAGTTTTCTCTTATCATAGAATATTTGAATGGATAACCTTTAGTTAAGTCACAAATAGTAAAGAAATGAAGGCGAATTCCACCTTTACTATGTGGCTGATATTTGTCATTTATTGTTGCAGAAGCCAATTGTACCCACTGATTTTTATAGAGGAGTGAGGGACACTCAGCTTGTGGGGATGTCTGGATATACAAGAGAGGTAATACTTTGATCTGATTATATAATTATCATTGATTAGCTCTCTTCTCATTCGGGTTTATGCAACTTTTGGCGTTGTGCTTGGCCAATATAATCTTATTGTGTGGTTTCTACTTGGTTTTAATGTGTGCAGGGTCTTCCCGTCGTTGCTGTTGGAGTAGGCCTCAGCACATACGACAAAGCATCGGTAAGGGTCATTAGGTTGGGTTATTTAGCCCTGTTAACAAGTCAATTCAGCTGCTCAAACATCTTTTTTTTTTTCATTTGTCTCATACAGGCGGCATTAAAATACTGACATAGTGTTTTTCTATTGTAGATTCACTACTATATTCAATCACATATCCAAATGAATGAATACCGTGACCGTATAATATTGGTATGTCCTTGTGTTTGTTCATTCAAATAGGAGATAAATACGAAAAAAATATCCTATGATGTTGACTGGCTGATGTTCATGTTACAGCCGTCTGCATCAAAGAAATTTGGGCGGTATATTGGGACCTGTGTTAAGGTTTTGGACATGACTGGTCTAAAGCTTTCTGCGCTAAACCAAATTAAGGTATCTCGTTATTTGTTTGACATTGTAATTATACTTCATCGACCTTCCTACCAAAATCCTACTGTGTAAATCCTTATCATCTTTTTTCTAGTCAACATTCTTCTTGGATGTATAGATTCACTTATTTCGCTGAAAATCTTTGGTTCTGCATTCGTCGTCCACACTAATAGTTCTTGTTAAAGTTTTGAAATGATGTTCAATTGTCA</genome_strand>
        <mrna_strand>TGAGATCGATCAGATACTTGCA...........................................................................................................................AAGCCAATTGTACCCACTGATTTTTATAGAGGAGTGAGGGACACTCAGCTTGTGGGGATGTCTGGATATACAAGAGAG....................................................................................................................................GGTCTTCCCGTCGTTGCTGTTGGAGTAGGCCTCAGCACATACGACAAAGCATCG.................................................................................................................................ATTCACTACTATATTCAATCACATATCCAAATGAATGAATACCGTGACCGTATAATATTG.......................................................................................CCGCCTGCATCAAAGAAATTTGGGCGGTATATTGGGACCTGTGTTAAGGTTTTGGACATGACTGGTCTAAAGCTTTCTGCGCTAAACCAAATTAACGTATCTCGTTATTTGTTTGACATTGTAATTATACTTCATCGACCTTCCTACCAAAATCCTACTGTGTAAATCCTTATCATCTTTTTTCTAGTCAACATTCTTCTTGGATGTATAGATTCACTTATTTCGCTGAAAATCTTTGGTTCTGCATTCGTCGTCCACACTAATAGTTCTTGTTAAAGTTTTGAAATGATGTTCAATTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E249763" ref_strand="+" ref_description="SGN-E249763 [cLEF-57-M6]">
      <seq>tttgcctaaatttaagaagatctgacaatgaagcagcaccttcaattcttgagtcactgtcctatgaggaagagggaggagagtggaaattgagaacttaaagaaaaagttgctttttttttcttcacaaaatacaacaacccctcttcctctttagacccaaaatctagggaaaaagcaagattttgaggttttttgataattttaggaggtgggtgtgaatcttttttgggtaaatttatagtgggatcaagaatggtgtgtataactgaagatatgattaagcaattgcagacttcaatggatgaaattgctgagccacttcagaaaactttccagaatgtatatcaggggtatcgaaccgagacactggtgaggtttctcaaagctagagatggcagtgtgtctaaagcacacaagatgcttgttgactgtttaaattggaggatagacaatgagatcgatcagatacttgcaaagccaattgtacccactgatttttatagaggagtgagggacactcagcttgtggggatgtctggatatacaagagagggtcttcccgtcgttgctgttggagtaggcctcagcacatacgacaaagcatcgattcactactatattcaatcacatatccaaatgaatgaataccgtgaccgtataatattgccgtctgcatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="72280" stop="69382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71980" g_stop="71671" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71670" i_stop="71569" i_length="102">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71568" g_stop="71540" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="339" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71539" i_stop="70496" i_length="1044">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70495" g_stop="70412" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="423" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70411" i_stop="70312" i_length="100">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.519" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70311" g_stop="70258" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="477" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70257" i_stop="70135" i_length="123">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70134" g_stop="70057" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="555" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70056" i_stop="69925" i_length="132">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69924" g_stop="69871" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="609" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69870" i_stop="69742" i_length="129">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.549" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69741" g_stop="69682" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="669" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="69681" i_stop="69595" i_length="87">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="69594" g_stop="69582" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="682" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E249763" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71980" e_stop="71671"/>
          <exon e_start="71568" e_stop="71540"/>
          <exon e_start="70495" e_stop="70412"/>
          <exon e_start="70311" e_stop="70258"/>
          <exon e_start="70134" e_stop="70057"/>
          <exon e_start="69924" e_stop="69871"/>
          <exon e_start="69741" e_stop="69682"/>
          <exon e_start="69594" e_stop="69582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCCTAAATTTAAGAAGATCTGACAATGAAGCAGCACCTTCAATTCTTGAGTCACTGTCCTATGAGGAAGAGGGAGGAGAGTGGAAATTGAGAACTTAAAGAAAAAGTTGCTTTTTTTTTCTTCACAAAATACAACAACCCCTCTTCCTCTTTAGACCCAAAATCTAGGGAAAAAGCAAGATTTTGAGGTTTTTTGATAATTTTAGGAGGTGGGTGTGAATCTTTTTTGGGTAAATTTATAGTGGGATCAAGAATGGTGTGTATAACTGAAGATATGATTAAGCAATTGCAGACTTCAATGGATGAAAGTTAGTATCTTTACTACTTATTATGATCTTGCTTGTACATTTCTTTTGAGTCTCAGCTTTTTTGAGTTTGGATCTCTAATTTTGTTGTTGTTGTTGTTGCAGTTGCTGAGCCACTTCAGAAAACTTTCCAGGTTTTGCTTCTAATTAACTCAACTTTATTTAAAATTTTGCTAAAAAAAAAGTTTCTGGATTTGATCTGTCTACTTGTTGTGATTCTTGATTTTGGTTTATTCAACAGTGGAGGTAAGTTGGTCAATGCCAAGTCAAATTTTTTTAGATTTCTTTGTTTGAGGTTTGACAAACTTGAAATTTTAGTAGGTTAGTTGGTTGACTAGCTAAACTTTCACCTTGTTGGTGGGGTCGATTCCCCACCTTGTAAATCTCATACCCCAATTTTCTTTTAGCAAACTCTAGTCTTGGAATGTTAACCAAATTGCTTTAGTTCTGCTTGCTTGGTGTGATTAATTACACAGAAGGTGCAAATGGAAATTTTCCTTGATGCTTTTTTTCTTGTGGTGGGCTAGTTATGAATCAGGATGCAACAATTTGTATTTCGTGGAGATGGATGTTCAAAGGTAGCATCTTGATGCAGAATCTGAAGTCACCTAAATGAAAATTGGTCAAAATGCAGCTAAAACTTTTCATAGATCTATTGTTTTTGAAATAAAACGCCCTTGTTCATATGTTAGAATGTATATGATCTGCAGTTGGAGAATGCTGAGCATAGTTAATCAACGAGTTACTCCGAAGACTTATATCCATAGCTAATGGTCACTGTGATGACAGTCCATCGAAGTTTTTAGCCAAAGATTGGTCTTTTACCTTGATTATAACTCTCTGTGAATAGCCAGTATCTCCCTTTATATTTATATGGGTAAAGAAAGTTACGAGTTCACGTAGCAGCAGGTGATTGCTCATATTAACACTTAGACAAATAGAAGGCTTATTATATCTGCCGTCAAAACTTAAATTAGTGAAGTGGCTGAACAAAATAAGACGAGCTAAGCATCTTGGCATGTGCAATAGTTAGATACTGAATAAAAGCTTGGCTATTTCATTGCTCAATGTTAATTAGAGGTTTTGAGGAATAAAAATAGAGATCCTTATTAGTGATGTTTCGTGAACCTATAACTATGTTATGACCGTACGTATATGATGTCTCAAATTTTGTGCAGAATGTATATCAGGGGTATCGAACCGAGACACTGGTGAGGTTTCTCAAAGCTAGAGATGGCAGTGTGTCTAAAGCACACAAGATGGTAAGTGCATACAGTTTTCATTCACATTTGAAGCTCAATATTGCTTCAGGATGAATATTGCACCGAGGAAATATTCTTAACTGTAATCAGCACTTTGCAGCTTGTTGACTGTTTAAATTGGAGGATAGACAATGAGATCGATCAGATACTTGCAGTAAGTTTTCTCTTATCATAGAATATTTGAATGGATAACCTTTAGTTAAGTCACAAATAGTAAAGAAATGAAGGCGAATTCCACCTTTACTATGTGGCTGATATTTGTCATTTATTGTTGCAGAAGCCAATTGTACCCACTGATTTTTATAGAGGAGTGAGGGACACTCAGCTTGTGGGGATGTCTGGATATACAAGAGAGGTAATACTTTGATCTGATTATATAATTATCATTGATTAGCTCTCTTCTCATTCGGGTTTATGCAACTTTTGGCGTTGTGCTTGGCCAATATAATCTTATTGTGTGGTTTCTACTTGGTTTTAATGTGTGCAGGGTCTTCCCGTCGTTGCTGTTGGAGTAGGCCTCAGCACATACGACAAAGCATCGGTAAGGGTCATTAGGTTGGGTTATTTAGCCCTGTTAACAAGTCAATTCAGCTGCTCAAACATCTTTTTTTTTTTCATTTGTCTCATACAGGCGGCATTAAAATACTGACATAGTGTTTTTCTATTGTAGATTCACTACTATATTCAATCACATATCCAAATGAATGAATACCGTGACCGTATAATATTGGTATGTCCTTGTGTTTGTTCATTCAAATAGGAGATAAATACGAAAAAAATATCCTATGATGTTGACTGGCTGATGTTCATGTTACAGCCGTCTGCATCAA</genome_strand>
        <mrna_strand>TTTGCCTAAATTTAAGAAGATCTGACAATGAAGCAGCACCTTCAATTCTTGAGTCACTGTCCTATGAGGAAGAGGGAGGAGAGTGGAAATTGAGAACTTAAAGAAAAAGTTGCTTTTTTTTTCTTCACAAAATACAACAACCCCTCTTCCTCTTTAGACCCAAAATCTAGGGAAAAAGCAAGATTTTGAGGTTTTTTGATAATTTTAGGAGGTGGGTGTGAATCTTTTTTGGGTAAATTTATAGTGGGATCAAGAATGGTGTGTATAACTGAAGATATGATTAAGCAATTGCAGACTTCAATGGATGAAA......................................................................................................TTGCTGAGCCACTTCAGAAAACTTTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTATATCAGGGGTATCGAACCGAGACACTGGTGAGGTTTCTCAAAGCTAGAGATGGCAGTGTGTCTAAAGCACACAAGATG....................................................................................................CTTGTTGACTGTTTAAATTGGAGGATAGACAATGAGATCGATCAGATACTTGCA...........................................................................................................................AAGCCAATTGTACCCACTGATTTTTATAGAGGAGTGAGGGACACTCAGCTTGTGGGGATGTCTGGATATACAAGAGAG....................................................................................................................................GGTCTTCCCGTCGTTGCTGTTGGAGTAGGCCTCAGCACATACGACAAAGCATCG.................................................................................................................................ATTCACTACTATATTCAATCACATATCCAAATGAATGAATACCGTGACCGTATAATATTG.......................................................................................CCGTCTGCATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E304265" ref_strand="+" ref_description="SGN-E304265 [cLEX-6-P6]">
      <seq>aggaagagggaggagagtggaaattgagaacttaaagaaaaagttgctttttttttcttcacaaaatacaacaacccctcttcctctttagacccaaaatctagggaaaaagcaagattttgaggttttttgataattttaggaggtgggtgtgaatcttttttgggtaaatttatagtgggatcaagaatggtgtgtataactgaagatatgattaagcaattgcagacttcaatggatgaaattgctgagccacttcagaaaactttccagaatgtatatcaggggtatcgaaccgagacactggtgaggtttctcaaagctagagatggcagtgtgtctaaagcacacaagatgcttgttgactgtttaaattggaggatagacaatgagatcgatcagatacttgcaaagccaattgtacccactgatttttatagaggagtgagggacactcagcttgtggggatgtctggatatacaagagagggtcttcccgtcgttgctgttggagtaggcctcagcacatacgacaaagcatcgattcactactatattcaatcacatatccaaatgaatgaatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="72214" stop="69399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71914" g_stop="71671" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71670" i_stop="71569" i_length="102">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71568" g_stop="71540" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="273" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71539" i_stop="70496" i_length="1044">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70495" g_stop="70412" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="357" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70411" i_stop="70312" i_length="100">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.519" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70311" g_stop="70258" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="411" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70257" i_stop="70135" i_length="123">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70134" g_stop="70057" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="489" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70056" i_stop="69925" i_length="132">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69924" g_stop="69871" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="543" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69870" i_stop="69742" i_length="129">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.549" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69741" g_stop="69699" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="586" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E304265" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71914" e_stop="71671"/>
          <exon e_start="71568" e_stop="71540"/>
          <exon e_start="70495" e_stop="70412"/>
          <exon e_start="70311" e_stop="70258"/>
          <exon e_start="70134" e_stop="70057"/>
          <exon e_start="69924" e_stop="69871"/>
          <exon e_start="69741" e_stop="69699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGAGGGAGGAGAGTGGAAATTGAGAACTTAAAGAAAAAGTTGCTTTTTTTTTCTTCACAAAATACAACAACCCCTCTTCCTCTTTAGACCCAAAATCTAGGGAAAAAGCAAGATTTTGAGGTTTTTTGATAATTTTAGGAGGTGGGTGTGAATCTTTTTTGGGTAAATTTATAGTGGGATCAAGAATGGTGTGTATAACTGAAGATATGATTAAGCAATTGCAGACTTCAATGGATGAAAGTTAGTATCTTTACTACTTATTATGATCTTGCTTGTACATTTCTTTTGAGTCTCAGCTTTTTTGAGTTTGGATCTCTAATTTTGTTGTTGTTGTTGTTGCAGTTGCTGAGCCACTTCAGAAAACTTTCCAGGTTTTGCTTCTAATTAACTCAACTTTATTTAAAATTTTGCTAAAAAAAAAGTTTCTGGATTTGATCTGTCTACTTGTTGTGATTCTTGATTTTGGTTTATTCAACAGTGGAGGTAAGTTGGTCAATGCCAAGTCAAATTTTTTTAGATTTCTTTGTTTGAGGTTTGACAAACTTGAAATTTTAGTAGGTTAGTTGGTTGACTAGCTAAACTTTCACCTTGTTGGTGGGGTCGATTCCCCACCTTGTAAATCTCATACCCCAATTTTCTTTTAGCAAACTCTAGTCTTGGAATGTTAACCAAATTGCTTTAGTTCTGCTTGCTTGGTGTGATTAATTACACAGAAGGTGCAAATGGAAATTTTCCTTGATGCTTTTTTTCTTGTGGTGGGCTAGTTATGAATCAGGATGCAACAATTTGTATTTCGTGGAGATGGATGTTCAAAGGTAGCATCTTGATGCAGAATCTGAAGTCACCTAAATGAAAATTGGTCAAAATGCAGCTAAAACTTTTCATAGATCTATTGTTTTTGAAATAAAACGCCCTTGTTCATATGTTAGAATGTATATGATCTGCAGTTGGAGAATGCTGAGCATAGTTAATCAACGAGTTACTCCGAAGACTTATATCCATAGCTAATGGTCACTGTGATGACAGTCCATCGAAGTTTTTAGCCAAAGATTGGTCTTTTACCTTGATTATAACTCTCTGTGAATAGCCAGTATCTCCCTTTATATTTATATGGGTAAAGAAAGTTACGAGTTCACGTAGCAGCAGGTGATTGCTCATATTAACACTTAGACAAATAGAAGGCTTATTATATCTGCCGTCAAAACTTAAATTAGTGAAGTGGCTGAACAAAATAAGACGAGCTAAGCATCTTGGCATGTGCAATAGTTAGATACTGAATAAAAGCTTGGCTATTTCATTGCTCAATGTTAATTAGAGGTTTTGAGGAATAAAAATAGAGATCCTTATTAGTGATGTTTCGTGAACCTATAACTATGTTATGACCGTACGTATATGATGTCTCAAATTTTGTGCAGAATGTATATCAGGGGTATCGAACCGAGACACTGGTGAGGTTTCTCAAAGCTAGAGATGGCAGTGTGTCTAAAGCACACAAGATGGTAAGTGCATACAGTTTTCATTCACATTTGAAGCTCAATATTGCTTCAGGATGAATATTGCACCGAGGAAATATTCTTAACTGTAATCAGCACTTTGCAGCTTGTTGACTGTTTAAATTGGAGGATAGACAATGAGATCGATCAGATACTTGCAGTAAGTTTTCTCTTATCATAGAATATTTGAATGGATAACCTTTAGTTAAGTCACAAATAGTAAAGAAATGAAGGCGAATTCCACCTTTACTATGTGGCTGATATTTGTCATTTATTGTTGCAGAAGCCAATTGTACCCACTGATTTTTATAGAGGAGTGAGGGACACTCAGCTTGTGGGGATGTCTGGATATACAAGAGAGGTAATACTTTGATCTGATTATATAATTATCATTGATTAGCTCTCTTCTCATTCGGGTTTATGCAACTTTTGGCGTTGTGCTTGGCCAATATAATCTTATTGTGTGGTTTCTACTTGGTTTTAATGTGTGCAGGGTCTTCCCGTCGTTGCTGTTGGAGTAGGCCTCAGCACATACGACAAAGCATCGGTAAGGGTCATTAGGTTGGGTTATTTAGCCCTGTTAACAAGTCAATTCAGCTGCTCAAACATCTTTTTTTTTTTCATTTGTCTCATACAGGCGGCATTAAAATACTGACATAGTGTTTTTCTATTGTAGATTCACTACTATATTCAATCACATATCCAAATGAATGAATACC</genome_strand>
        <mrna_strand>AGGAAGAGGGAGGAGAGTGGAAATTGAGAACTTAAAGAAAAAGTTGCTTTTTTTTTCTTCACAAAATACAACAACCCCTCTTCCTCTTTAGACCCAAAATCTAGGGAAAAAGCAAGATTTTGAGGTTTTTTGATAATTTTAGGAGGTGGGTGTGAATCTTTTTTGGGTAAATTTATAGTGGGATCAAGAATGGTGTGTATAACTGAAGATATGATTAAGCAATTGCAGACTTCAATGGATGAAA......................................................................................................TTGCTGAGCCACTTCAGAAAACTTTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTATATCAGGGGTATCGAACCGAGACACTGGTGAGGTTTCTCAAAGCTAGAGATGGCAGTGTGTCTAAAGCACACAAGATG....................................................................................................CTTGTTGACTGTTTAAATTGGAGGATAGACAATGAGATCGATCAGATACTTGCA...........................................................................................................................AAGCCAATTGTACCCACTGATTTTTATAGAGGAGTGAGGGACACTCAGCTTGTGGGGATGTCTGGATATACAAGAGAG....................................................................................................................................GGTCTTCCCGTCGTTGCTGTTGGAGTAGGCCTCAGCACATACGACAAAGCATCG.................................................................................................................................ATTCACTACTATATTCAATCACATATCCAAATGAATGAATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E302482" ref_strand="+" ref_description="SGN-E302482 [cLEW-27-L20]">
      <seq>tcctatgaggaatagggaggagagtggaaattgagaacttaaagaaaaagttgctttttttttcttcacaaaatacaacaacccctcttcctctttagacccaaaatctagggaaaaagcaagattttgaggttttttgataattttaggaggtgggtgtgaatcttttttgggtaaatttatagtgggatcaagaatggtgtgtataactgaagatatgattaagcaattgcagacttcaatggatgaaattgctgagccacttcagaaaactttccagaatgtatatcaggggtatcgaaccgagacactggtgaggtttctcaaagctagagatggcagtgtgtctaaagcacacaagatgcttgttgactgtttaaattggaggatagacaatgagatcgatcagatacttgcaaagccaattgtacccactgatttttatagaggagtgagggacactcagcttgtggggatgtctggatatacaagagagggtcttcccgtcgttgctgttggagtaggcctcagcacatacgacaaagcatcgattcactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="72221" stop="69569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71921" g_stop="71671" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71670" i_stop="71569" i_length="102">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71568" g_stop="71540" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="280" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71539" i_stop="70496" i_length="1044">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70495" g_stop="70412" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="364" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70411" i_stop="70312" i_length="100">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.519" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70311" g_stop="70258" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="418" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70257" i_stop="70135" i_length="123">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70134" g_stop="70057" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="496" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70056" i_stop="69925" i_length="132">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69924" g_stop="69871" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="550" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69870" i_stop="69742" i_length="129">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.549" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69741" g_stop="69733" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="559" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E302482" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71921" e_stop="71671"/>
          <exon e_start="71568" e_stop="71540"/>
          <exon e_start="70495" e_stop="70412"/>
          <exon e_start="70311" e_stop="70258"/>
          <exon e_start="70134" e_stop="70057"/>
          <exon e_start="69924" e_stop="69871"/>
          <exon e_start="69741" e_stop="69733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTATGAGGAAGAGGGAGGAGAGTGGAAATTGAGAACTTAAAGAAAAAGTTGCTTTTTTTTTCTTCACAAAATACAACAACCCCTCTTCCTCTTTAGACCCAAAATCTAGGGAAAAAGCAAGATTTTGAGGTTTTTTGATAATTTTAGGAGGTGGGTGTGAATCTTTTTTGGGTAAATTTATAGTGGGATCAAGAATGGTGTGTATAACTGAAGATATGATTAAGCAATTGCAGACTTCAATGGATGAAAGTTAGTATCTTTACTACTTATTATGATCTTGCTTGTACATTTCTTTTGAGTCTCAGCTTTTTTGAGTTTGGATCTCTAATTTTGTTGTTGTTGTTGTTGCAGTTGCTGAGCCACTTCAGAAAACTTTCCAGGTTTTGCTTCTAATTAACTCAACTTTATTTAAAATTTTGCTAAAAAAAAAGTTTCTGGATTTGATCTGTCTACTTGTTGTGATTCTTGATTTTGGTTTATTCAACAGTGGAGGTAAGTTGGTCAATGCCAAGTCAAATTTTTTTAGATTTCTTTGTTTGAGGTTTGACAAACTTGAAATTTTAGTAGGTTAGTTGGTTGACTAGCTAAACTTTCACCTTGTTGGTGGGGTCGATTCCCCACCTTGTAAATCTCATACCCCAATTTTCTTTTAGCAAACTCTAGTCTTGGAATGTTAACCAAATTGCTTTAGTTCTGCTTGCTTGGTGTGATTAATTACACAGAAGGTGCAAATGGAAATTTTCCTTGATGCTTTTTTTCTTGTGGTGGGCTAGTTATGAATCAGGATGCAACAATTTGTATTTCGTGGAGATGGATGTTCAAAGGTAGCATCTTGATGCAGAATCTGAAGTCACCTAAATGAAAATTGGTCAAAATGCAGCTAAAACTTTTCATAGATCTATTGTTTTTGAAATAAAACGCCCTTGTTCATATGTTAGAATGTATATGATCTGCAGTTGGAGAATGCTGAGCATAGTTAATCAACGAGTTACTCCGAAGACTTATATCCATAGCTAATGGTCACTGTGATGACAGTCCATCGAAGTTTTTAGCCAAAGATTGGTCTTTTACCTTGATTATAACTCTCTGTGAATAGCCAGTATCTCCCTTTATATTTATATGGGTAAAGAAAGTTACGAGTTCACGTAGCAGCAGGTGATTGCTCATATTAACACTTAGACAAATAGAAGGCTTATTATATCTGCCGTCAAAACTTAAATTAGTGAAGTGGCTGAACAAAATAAGACGAGCTAAGCATCTTGGCATGTGCAATAGTTAGATACTGAATAAAAGCTTGGCTATTTCATTGCTCAATGTTAATTAGAGGTTTTGAGGAATAAAAATAGAGATCCTTATTAGTGATGTTTCGTGAACCTATAACTATGTTATGACCGTACGTATATGATGTCTCAAATTTTGTGCAGAATGTATATCAGGGGTATCGAACCGAGACACTGGTGAGGTTTCTCAAAGCTAGAGATGGCAGTGTGTCTAAAGCACACAAGATGGTAAGTGCATACAGTTTTCATTCACATTTGAAGCTCAATATTGCTTCAGGATGAATATTGCACCGAGGAAATATTCTTAACTGTAATCAGCACTTTGCAGCTTGTTGACTGTTTAAATTGGAGGATAGACAATGAGATCGATCAGATACTTGCAGTAAGTTTTCTCTTATCATAGAATATTTGAATGGATAACCTTTAGTTAAGTCACAAATAGTAAAGAAATGAAGGCGAATTCCACCTTTACTATGTGGCTGATATTTGTCATTTATTGTTGCAGAAGCCAATTGTACCCACTGATTTTTATAGAGGAGTGAGGGACACTCAGCTTGTGGGGATGTCTGGATATACAAGAGAGGTAATACTTTGATCTGATTATATAATTATCATTGATTAGCTCTCTTCTCATTCGGGTTTATGCAACTTTTGGCGTTGTGCTTGGCCAATATAATCTTATTGTGTGGTTTCTACTTGGTTTTAATGTGTGCAGGGTCTTCCCGTCGTTGCTGTTGGAGTAGGCCTCAGCACATACGACAAAGCATCGGTAAGGGTCATTAGGTTGGGTTATTTAGCCCTGTTAACAAGTCAATTCAGCTGCTCAAACATCTTTTTTTTTTTCATTTGTCTCATACAGGCGGCATTAAAATACTGACATAGTGTTTTTCTATTGTAGATTCACTAC</genome_strand>
        <mrna_strand>TCCTATGAGGAATAGGGAGGAGAGTGGAAATTGAGAACTTAAAGAAAAAGTTGCTTTTTTTTTCTTCACAAAATACAACAACCCCTCTTCCTCTTTAGACCCAAAATCTAGGGAAAAAGCAAGATTTTGAGGTTTTTTGATAATTTTAGGAGGTGGGTGTGAATCTTTTTTGGGTAAATTTATAGTGGGATCAAGAATGGTGTGTATAACTGAAGATATGATTAAGCAATTGCAGACTTCAATGGATGAAA......................................................................................................TTGCTGAGCCACTTCAGAAAACTTTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTATATCAGGGGTATCGAACCGAGACACTGGTGAGGTTTCTCAAAGCTAGAGATGGCAGTGTGTCTAAAGCACACAAGATG....................................................................................................CTTGTTGACTGTTTAAATTGGAGGATAGACAATGAGATCGATCAGATACTTGCA...........................................................................................................................AAGCCAATTGTACCCACTGATTTTTATAGAGGAGTGAGGGACACTCAGCTTGTGGGGATGTCTGGATATACAAGAGAG....................................................................................................................................GGTCTTCCCGTCGTTGCTGTTGGAGTAGGCCTCAGCACATACGACAAAGCATCG.................................................................................................................................ATTCACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E305690" ref_strand="+" ref_description="SGN-E305690 [cLEX-14-N24]">
      <seq>aggaagagggaggagagtggaaattgagaacttaaagaaaaagttgctttttttttcttcacaaaatacaacaacccctcttcctctttatacccaaaatctagggaaaaagcaagattttgaggttttttgataattttaggaggtgggtgtgaatcttttttgggtaaatttatagtgggatcaagaatggtgtgtataactgaagatatgattaagcaattgcagacttcaatggatgaaattgctgagccacttcacaaaactttccagaatgtatatcaggggtatcgaaccgagacactggtgaggtttctcaaagctagagatggcagtgtgtctaaagcacacaagatgcttgttgactgtttaaattggaggatagacaatgagatcgatcagatacttgcaaagccaattgtacccactgattcttatagaggagtgagggacactcagcttgtggggatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="72214" stop="69772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71914" g_stop="71671" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71670" i_stop="71569" i_length="102">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71568" g_stop="71540" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="273" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71539" i_stop="70496" i_length="1044">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70495" g_stop="70412" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="357" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70411" i_stop="70312" i_length="100">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.519" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70311" g_stop="70258" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="411" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70257" i_stop="70135" i_length="123">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70134" g_stop="70072" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="474" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E305690" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71914" e_stop="71671"/>
          <exon e_start="71568" e_stop="71540"/>
          <exon e_start="70495" e_stop="70412"/>
          <exon e_start="70311" e_stop="70258"/>
          <exon e_start="70134" e_stop="70072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGAGGGAGGAGAGTGGAAATTGAGAACTTAAAGAAAAAGTTGCTTTTTTTTTCTTCACAAAATACAACAACCCCTCTTCCTCTTTAGACCCAAAATCTAGGGAAAAAGCAAGATTTTGAGGTTTTTTGATAATTTTAGGAGGTGGGTGTGAATCTTTTTTGGGTAAATTTATAGTGGGATCAAGAATGGTGTGTATAACTGAAGATATGATTAAGCAATTGCAGACTTCAATGGATGAAAGTTAGTATCTTTACTACTTATTATGATCTTGCTTGTACATTTCTTTTGAGTCTCAGCTTTTTTGAGTTTGGATCTCTAATTTTGTTGTTGTTGTTGTTGCAGTTGCTGAGCCACTTCAGAAAACTTTCCAGGTTTTGCTTCTAATTAACTCAACTTTATTTAAAATTTTGCTAAAAAAAAAGTTTCTGGATTTGATCTGTCTACTTGTTGTGATTCTTGATTTTGGTTTATTCAACAGTGGAGGTAAGTTGGTCAATGCCAAGTCAAATTTTTTTAGATTTCTTTGTTTGAGGTTTGACAAACTTGAAATTTTAGTAGGTTAGTTGGTTGACTAGCTAAACTTTCACCTTGTTGGTGGGGTCGATTCCCCACCTTGTAAATCTCATACCCCAATTTTCTTTTAGCAAACTCTAGTCTTGGAATGTTAACCAAATTGCTTTAGTTCTGCTTGCTTGGTGTGATTAATTACACAGAAGGTGCAAATGGAAATTTTCCTTGATGCTTTTTTTCTTGTGGTGGGCTAGTTATGAATCAGGATGCAACAATTTGTATTTCGTGGAGATGGATGTTCAAAGGTAGCATCTTGATGCAGAATCTGAAGTCACCTAAATGAAAATTGGTCAAAATGCAGCTAAAACTTTTCATAGATCTATTGTTTTTGAAATAAAACGCCCTTGTTCATATGTTAGAATGTATATGATCTGCAGTTGGAGAATGCTGAGCATAGTTAATCAACGAGTTACTCCGAAGACTTATATCCATAGCTAATGGTCACTGTGATGACAGTCCATCGAAGTTTTTAGCCAAAGATTGGTCTTTTACCTTGATTATAACTCTCTGTGAATAGCCAGTATCTCCCTTTATATTTATATGGGTAAAGAAAGTTACGAGTTCACGTAGCAGCAGGTGATTGCTCATATTAACACTTAGACAAATAGAAGGCTTATTATATCTGCCGTCAAAACTTAAATTAGTGAAGTGGCTGAACAAAATAAGACGAGCTAAGCATCTTGGCATGTGCAATAGTTAGATACTGAATAAAAGCTTGGCTATTTCATTGCTCAATGTTAATTAGAGGTTTTGAGGAATAAAAATAGAGATCCTTATTAGTGATGTTTCGTGAACCTATAACTATGTTATGACCGTACGTATATGATGTCTCAAATTTTGTGCAGAATGTATATCAGGGGTATCGAACCGAGACACTGGTGAGGTTTCTCAAAGCTAGAGATGGCAGTGTGTCTAAAGCACACAAGATGGTAAGTGCATACAGTTTTCATTCACATTTGAAGCTCAATATTGCTTCAGGATGAATATTGCACCGAGGAAATATTCTTAACTGTAATCAGCACTTTGCAGCTTGTTGACTGTTTAAATTGGAGGATAGACAATGAGATCGATCAGATACTTGCAGTAAGTTTTCTCTTATCATAGAATATTTGAATGGATAACCTTTAGTTAAGTCACAAATAGTAAAGAAATGAAGGCGAATTCCACCTTTACTATGTGGCTGATATTTGTCATTTATTGTTGCAGAAGCCAATTGTACCCACTGATTTTTATAGAGGAGTGAGGGACACTCAGCTTGTGGGGATGTCT</genome_strand>
        <mrna_strand>AGGAAGAGGGAGGAGAGTGGAAATTGAGAACTTAAAGAAAAAGTTGCTTTTTTTTTCTTCACAAAATACAACAACCCCTCTTCCTCTTTATACCCAAAATCTAGGGAAAAAGCAAGATTTTGAGGTTTTTTGATAATTTTAGGAGGTGGGTGTGAATCTTTTTTGGGTAAATTTATAGTGGGATCAAGAATGGTGTGTATAACTGAAGATATGATTAAGCAATTGCAGACTTCAATGGATGAAA......................................................................................................TTGCTGAGCCACTTCACAAAACTTTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTATATCAGGGGTATCGAACCGAGACACTGGTGAGGTTTCTCAAAGCTAGAGATGGCAGTGTGTCTAAAGCACACAAGATG....................................................................................................CTTGTTGACTGTTTAAATTGGAGGATAGACAATGAGATCGATCAGATACTTGCA...........................................................................................................................AAGCCAATTGTACCCACTGATTCTTATAGAGGAGTGAGGGACACTCAGCTTGTGGGGATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E271272" ref_strand="+" ref_description="SGN-E271272 [cLEM-5-F7]">
      <seq>aaatctagggaaaaagcaagattttgaggttttttgataattttaggaggtgggtgtgaatcttttttgggtaaatttatagtgggatcaagaatggtgtgtataactgaagatatgattaagcaattgcagacttcaatggatgaaattgctgagccacttcagaaaactttccagaatgtatatcaggggtatcgaaccgagacactggtgaggtttctcaaagctagagatggcagtgtgtctaaagcacacaagatgcttgttgactgtttaaattggaggatagacaatgagatcgatcagatacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="72118" stop="69959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71818" g_stop="71671" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71670" i_stop="71569" i_length="102">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71568" g_stop="71540" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="177" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71539" i_stop="70496" i_length="1044">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70495" g_stop="70412" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="261" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70411" i_stop="70312" i_length="100">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.519" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70311" g_stop="70259" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="314" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E271272" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71818" e_stop="71671"/>
          <exon e_start="71568" e_stop="71540"/>
          <exon e_start="70495" e_stop="70412"/>
          <exon e_start="70311" e_stop="70259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTAGGGAAAAAGCAAGATTTTGAGGTTTTTTGATAATTTTAGGAGGTGGGTGTGAATCTTTTTTGGGTAAATTTATAGTGGGATCAAGAATGGTGTGTATAACTGAAGATATGATTAAGCAATTGCAGACTTCAATGGATGAAAGTTAGTATCTTTACTACTTATTATGATCTTGCTTGTACATTTCTTTTGAGTCTCAGCTTTTTTGAGTTTGGATCTCTAATTTTGTTGTTGTTGTTGTTGCAGTTGCTGAGCCACTTCAGAAAACTTTCCAGGTTTTGCTTCTAATTAACTCAACTTTATTTAAAATTTTGCTAAAAAAAAAGTTTCTGGATTTGATCTGTCTACTTGTTGTGATTCTTGATTTTGGTTTATTCAACAGTGGAGGTAAGTTGGTCAATGCCAAGTCAAATTTTTTTAGATTTCTTTGTTTGAGGTTTGACAAACTTGAAATTTTAGTAGGTTAGTTGGTTGACTAGCTAAACTTTCACCTTGTTGGTGGGGTCGATTCCCCACCTTGTAAATCTCATACCCCAATTTTCTTTTAGCAAACTCTAGTCTTGGAATGTTAACCAAATTGCTTTAGTTCTGCTTGCTTGGTGTGATTAATTACACAGAAGGTGCAAATGGAAATTTTCCTTGATGCTTTTTTTCTTGTGGTGGGCTAGTTATGAATCAGGATGCAACAATTTGTATTTCGTGGAGATGGATGTTCAAAGGTAGCATCTTGATGCAGAATCTGAAGTCACCTAAATGAAAATTGGTCAAAATGCAGCTAAAACTTTTCATAGATCTATTGTTTTTGAAATAAAACGCCCTTGTTCATATGTTAGAATGTATATGATCTGCAGTTGGAGAATGCTGAGCATAGTTAATCAACGAGTTACTCCGAAGACTTATATCCATAGCTAATGGTCACTGTGATGACAGTCCATCGAAGTTTTTAGCCAAAGATTGGTCTTTTACCTTGATTATAACTCTCTGTGAATAGCCAGTATCTCCCTTTATATTTATATGGGTAAAGAAAGTTACGAGTTCACGTAGCAGCAGGTGATTGCTCATATTAACACTTAGACAAATAGAAGGCTTATTATATCTGCCGTCAAAACTTAAATTAGTGAAGTGGCTGAACAAAATAAGACGAGCTAAGCATCTTGGCATGTGCAATAGTTAGATACTGAATAAAAGCTTGGCTATTTCATTGCTCAATGTTAATTAGAGGTTTTGAGGAATAAAAATAGAGATCCTTATTAGTGATGTTTCGTGAACCTATAACTATGTTATGACCGTACGTATATGATGTCTCAAATTTTGTGCAGAATGTATATCAGGGGTATCGAACCGAGACACTGGTGAGGTTTCTCAAAGCTAGAGATGGCAGTGTGTCTAAAGCACACAAGATGGTAAGTGCATACAGTTTTCATTCACATTTGAAGCTCAATATTGCTTCAGGATGAATATTGCACCGAGGAAATATTCTTAACTGTAATCAGCACTTTGCAGCTTGTTGACTGTTTAAATTGGAGGATAGACAATGAGATCGATCAGATACTTGC</genome_strand>
        <mrna_strand>AAATCTAGGGAAAAAGCAAGATTTTGAGGTTTTTTGATAATTTTAGGAGGTGGGTGTGAATCTTTTTTGGGTAAATTTATAGTGGGATCAAGAATGGTGTGTATAACTGAAGATATGATTAAGCAATTGCAGACTTCAATGGATGAAA......................................................................................................TTGCTGAGCCACTTCAGAAAACTTTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTATATCAGGGGTATCGAACCGAGACACTGGTGAGGTTTCTCAAAGCTAGAGATGGCAGTGTGTCTAAAGCACACAAGATG....................................................................................................CTTGTTGACTGTTTAAATTGGAGGATAGACAATGAGATCGATCAGATACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E739461" ref_strand="+" ref_description="SGN-E739461 [LC17CC07]">
      <seq>acatcgaagggagaggtcagtccaacactagtcaagtcatcatctcttgaaggtgagccactgcgcaagaattcagcttattgtgtgcagccagcatgcatcgagccctcttgtattcagccatcctgtgctgttactactacatgtttcgggcctcgcctcttttccagcaagtcaaagaaagaaaagaaatctaaaaatgaaataggtaaccaagttagcccattaccagagcttattgctgagcctactggagcacggtcaatgtcatttgtcgggactcacgagtacttagcacccgagataatcaaaggtgaaggacacggcagtgcagtagactggtggacctttggtatctttctatatgagttactgtttggcaaaacacccttcaagggatcaggaaatcgacaaactcttttcaacgttgttggtcagcccttgcggtttccagaatctccagtggtcagtttctcagctagagatcttatccgaggcttgctcgtgaaggagcctcagcatagactggcatacaaaagaggagccacagaaatcaagcaacatcctttctttgaaggtgtaaattgggctttgatacgctgcgcgagccctcctgagatcccaaggcctgtggaattcgagagaatttcagttccaccagcagcatcaaccagtgagaaaggtgtagctggaactgttccttaccagaagaattcagacaactatcttgagtttgatttcttctaatctattttttatatatctttttttccgtcgaggcgatattggctgttcatcttcacaaattgaaacataggaaggctgtacaacatttggaagatgttatgtgaaggtttgattagtttgatgatcatattattgttttgagttgtaattcaacagttgaaaatttgttgcatgccaaaacactacaagtttgatgctaacaatcgaatatgtgaaattgttagtttatttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="83169" stop="16816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82859" g_stop="81902" g_length="958"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="978" r_length="958" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81901" i_stop="80451" i_length="1451">
            <donor d_prob="0.900" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80450" g_stop="80433" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="979" r_stop="996" r_length="18" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E739461" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>976</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82859" e_stop="81902"/>
          <exon e_start="80450" e_stop="80433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAACACTAGTCAAGTCATCATCTCTTGAAGGTGAGCCACTGCGCAAGAATTCAGCTTATTGTGTGCAGCCAGCATGCATCGAGCCCTCTTGTATTCAGCCATCCTGTGCTGTTACTACTACATGTTTCGGGCCTCGCCTCTTTTCCAGCAAGTCAAAGAAAGAAAAGAAATCTAAAAATGAAATAGGTAACCAAGTTAGCCCATTACCAGAGCTTATTGCTGAGCCTACTGGAGCACGGTCAATGTCATTTGTCGGGACTCACGAGTACTTAGCACCCGAGATAATCAAAGGTGAAGGACACGGCAGTGCAGTAGACTGGTGGACCTTTGGTATCTTTCTATATGAGTTACTGTTTGGCAAAACACCCTTCAAGGGATCAGGAAATCGACAAACTCTTTTCAACGTTGTTGGTCAGCCCTTGCGGTTTCCAGAATCTCCAGTGGTCAGTTTCTCAGCTAGAGATCTTATCCGAGGCTTGCTCGTGAAGGAGCCTCAGCATAGACTGGCATACAAAAGAGGAGCCACAGAAATCAAGCAACATCCTTTCTTTGAAGGTGTAAATTGGGCTTTGATACGCTGCGCGAGCCCTCCTGAGATCCCAAGGCCTGTGGAATTCGAGAGAATTTCAGTTCCACCAGCAGCATCAACCAGTGAGAAAGGTGTAGCTGGAACTGTTCCTTACCAGAAGAATTCAGACAACTATCTTGAGTTTGATTTCTTCTAATCTATTTTTTATATATCTTTTTTTCCGTCGAGGCGATATTGGCTGTTCATCTTCACAAATTGAAACATAGGAAGGCTGTACAACATTTGGAAGATGTTATGTGAAGGTTTGATTAGTTTGATGATCATATTATTGTTTTGAGTTGTAATTCAACAGTTGAAAATTTGTTGCATGCCAAAACACTACAAGTTTGATGCTACCAATCGATAATGTGAATTTGTTAGTTTATTTATATCTTTGTTTTTCTTCCTTTTATGGTTCGATAACTCTTTTTGATGTATGAGGTTAGTTGCTTCAATAGTATTTATTCGAAGTTATCAACATGATATCAGTAGACTATAAGCCTTTGATTTGTGGTGTTTGAAGCTCTCGACTTGATATCACTAGACTATAAGCCTTTGATTTGTAGTGAATGAAGCGATTTTGAGAAGCCTTTGATGATTATTAGTCTGGTAGCCTTTGATAGTTAGTGTTTGAAACTCTCGACATGATATCACTAGACTATAAGCCTTTAATTTGTAGTGTTTGAAACACTCCACATGTTTTTAGAAGCCATGATTATTAATATCAGTAGACTATAAGCCTTTGATTTGTGGTGTTTGAAGCTCTGGACTTGATATCACTAGACTATAAGCCTTTGATTTGTAGTGAATGAAACGATTTTGAGAAGCCTTTGATGATTATTGGTCTGGTAGCCTTTGATAGTTAGTGTTTGAAACTCTCGACATGATATCACTAGACTATAAGCCTTTAATTTGTAGTGTTTGAAACACTCCACATGTTTTTAGAAGCCATGATTATTGATATCAGTAGACTATAAGCCTTTGATTTGTGGTGTTTGAAGCTCTCGACTTGATATCACTAGACTATAAGCCTTTGATTTGTAGTGAATGAAGCGATTTTGAGAAGCCTTTGATGATTATTAGTCTGGTAGCCTTTGATAGTTAGTGTTTGAAACTCTCGACATGATATCACTAGACTATAAGCCTTTAATTTGTAGTGTTTGAAACACTCCACATGTTTTTAGAAGCCATGATTATTAATATCAGTAGACTATAAGCCTTTGATTTGTGGTGTTTGAAGCTCTGGACTTGATATCACTAGACTATAAGCCTTTGATTTGTAGTGAATGAAACGATTTTGAGAAGCCTTTGATGATTATTGGTCTGGTAGCCTTTGATAGTTAGTGTTTGAAACTCTCGACATGATATCACTAGACTATAAGCCTTTAATTTGTAGTGTTTGAAACACTCCACATGTTTTTAGAAGCCATGATTATTGATATCAGTAGACTATAAGCCTTTGATTTGTGGTGTTTGAAGCTCTGGACTTGATATCACTAGACTATAAGCCTTTGATTTGTAGTGAATGAAACGATTTTGAGAAGCCTTTGATGATTATTGGTCTGGTAGCTTTGATAGTTAGTGTTTGAAACTCTCGACATGATATCACTAGACTATAAGCCTTTAATTTGTAGTGTTTGAAACACTCCACATGTTTTTAGAAGCCATGATTATTGATATCACTAGACTATAAGCCTTTGATTTGTAGTGAATGATACATTCCACATGTTTTTGAGAAGCCAGACCGATAATCATGATGAACAATATGAAATGTGATATACACAAAACATTTAGTGTTTATGTATTATCGATTTTGAACTATAAATAATAATCTAATACACAAAACATTAAAAAAAA</genome_strand>
        <mrna_strand>TCCAACACTAGTCAAGTCATCATCTCTTGAAGGTGAGCCACTGCGCAAGAATTCAGCTTATTGTGTGCAGCCAGCATGCATCGAGCCCTCTTGTATTCAGCCATCCTGTGCTGTTACTACTACATGTTTCGGGCCTCGCCTCTTTTCCAGCAAGTCAAAGAAAGAAAAGAAATCTAAAAATGAAATAGGTAACCAAGTTAGCCCATTACCAGAGCTTATTGCTGAGCCTACTGGAGCACGGTCAATGTCATTTGTCGGGACTCACGAGTACTTAGCACCCGAGATAATCAAAGGTGAAGGACACGGCAGTGCAGTAGACTGGTGGACCTTTGGTATCTTTCTATATGAGTTACTGTTTGGCAAAACACCCTTCAAGGGATCAGGAAATCGACAAACTCTTTTCAACGTTGTTGGTCAGCCCTTGCGGTTTCCAGAATCTCCAGTGGTCAGTTTCTCAGCTAGAGATCTTATCCGAGGCTTGCTCGTGAAGGAGCCTCAGCATAGACTGGCATACAAAAGAGGAGCCACAGAAATCAAGCAACATCCTTTCTTTGAAGGTGTAAATTGGGCTTTGATACGCTGCGCGAGCCCTCCTGAGATCCCAAGGCCTGTGGAATTCGAGAGAATTTCAGTTCCACCAGCAGCATCAACCAGTGAGAAAGGTGTAGCTGGAACTGTTCCTTACCAGAAGAATTCAGACAACTATCTTGAGTTTGATTTCTTCTAATCTATTTTTTATATATCTTTTTTTCCGTCGAGGCGATATTGGCTGTTCATCTTCACAAATTGAAACATAGGAAGGCTGTACAACATTTGGAAGATGTTATGTGAAGGTTTGATTAGTTTGATGATCATATTATTGTTTTGAGTTGTAATTCAACAGTTGAAAATTTGTTGCATGCCAAAACACTACAAGTTTGATGCTAACAATCGAATATGTGAAATTGTTAGTTTATTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E540066" ref_strand="+" ref_description="SGN-E540066 [TUS-60-C11]">
      <seq>ttttttttttaaataaactaacaaattcacattatcgattggtagcatcaaacttgtagtgttttggcatgcaacaaattttcaactgttgaattacaactcaaaacaataatatgatcatcaaactaatcaaaccttcacataacatcttccaaatgttgtacagccttcctatgtttcaatttgtgaagatgaacagccaatatcgcctcgacggaaaaaaagatatataaaaaatagattagaagaaatcaaactcaagatagttgtctgaattcttctggtaaggaacagttccagctacacctttctcactggttgatgctgctggtggaactgaaattctctcgaattccacaggccttgggatctcaggagggctcgcgcagcgtatcaaagcccaatttacaccttcaaagaaaggatgttgcttgatttctgtggctcctcttttgtatgccagtctatgctgaggctccttcacgagcaagcctcggataagatctctagctgagaaactgaccactggagattctggaaaccgcaagggctgaccaacaacgttgaaaagagtttgtcgatttcctgatcccttgaagggtgttttgccaaacagtaactcatatagaaagataccaaaggtccaccagtctactgcactgccgtgtccttcacctttgattatctcgggtgctaagtactcgtgagtcccgacaaatgacattgaccgtgctccagtaggctcagcaataagctctggtaatgggctaacttggttacctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="81599" stop="82975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81898" g_stop="82675" g_length="778"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="784" r_length="778" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E540066" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81898" e_stop="82675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAAATAAACTAACAAATTCACATTATCGATTGGTAGCATCAAACTTGTAGTGTTTTGGCATGCAACAAATTTTCAACTGTTGAATTACAACTCAAAACAATAATATGATCATCAAACTAATCAAACCTTCACATAACATCTTCCAAATGTTGTACAGCCTTCCTATGTTTCAATTTGTGAAGATGAACAGCCAATATCGCCTCGACGGAAAAAAAGATATATAAAAAATAGATTAGAAGAAATCAAACTCAAGATAGTTGTCTGAATTCTTCTGGTAAGGAACAGTTCCAGCTACACCTTTCTCACTGGTTGATGCTGCTGGTGGAACTGAAATTCTCTCGAATTCCACAGGCCTTGGGATCTCAGGAGGGCTCGCGCAGCGTATCAAAGCCCAATTTACACCTTCAAAGAAAGGATGTTGCTTGATTTCTGTGGCTCCTCTTTTGTATGCCAGTCTATGCTGAGGCTCCTTCACGAGCAAGCCTCGGATAAGATCTCTAGCTGAGAAACTGACCACTGGAGATTCTGGAAACCGCAAGGGCTGACCAACAACGTTGAAAAGAGTTTGTCGATTTCCTGATCCCTTGAAGGGTGTTTTGCCAAACAGTAACTCATATAGAAAGATACCAAAGGTCCACCAGTCTACTGCACTGCCGTGTCCTTCACCTTTGATTATCTCGGGTGCTAAGTACTCGTGAGTCCCGACAAATGACATTGACCGTGCTCCAGTAGGCTCAGCAATAAGCTCTGGTAATGGGCTAACTTGGTTACCTAT</genome_strand>
        <mrna_strand>TTTTAAATAAACTAACAAATTCACATTATCGATTGGTAGCATCAAACTTGTAGTGTTTTGGCATGCAACAAATTTTCAACTGTTGAATTACAACTCAAAACAATAATATGATCATCAAACTAATCAAACCTTCACATAACATCTTCCAAATGTTGTACAGCCTTCCTATGTTTCAATTTGTGAAGATGAACAGCCAATATCGCCTCGACGGAAAAAAAGATATATAAAAAATAGATTAGAAGAAATCAAACTCAAGATAGTTGTCTGAATTCTTCTGGTAAGGAACAGTTCCAGCTACACCTTTCTCACTGGTTGATGCTGCTGGTGGAACTGAAATTCTCTCGAATTCCACAGGCCTTGGGATCTCAGGAGGGCTCGCGCAGCGTATCAAAGCCCAATTTACACCTTCAAAGAAAGGATGTTGCTTGATTTCTGTGGCTCCTCTTTTGTATGCCAGTCTATGCTGAGGCTCCTTCACGAGCAAGCCTCGGATAAGATCTCTAGCTGAGAAACTGACCACTGGAGATTCTGGAAACCGCAAGGGCTGACCAACAACGTTGAAAAGAGTTTGTCGATTTCCTGATCCCTTGAAGGGTGTTTTGCCAAACAGTAACTCATATAGAAAGATACCAAAGGTCCACCAGTCTACTGCACTGCCGTGTCCTTCACCTTTGATTATCTCGGGTGCTAAGTACTCGTGAGTCCCGACAAATGACATTGACCGTGCTCCAGTAGGCTCAGCAATAAGCTCTGGTAATGGGCTAACTTGGTTACCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E709959" ref_strand="+" ref_description="SGN-E709959 [FA53DA08]">
      <seq>cgatggagttctgcccaggaggagacctgcacacactcagacaaagacaaccagggaagcatttttcagaacaagcggtgaaattctacgtagcagaagtgctcctttccctggaataccttcacatgcttggcattgtctatcgtgatctcaagccagaaaatgtgcttgtcagagaagatggacatataatgctctctgattttgacctctcccttcgctgtgctgtcagtccaacactagtcaagtcatcatctcttgaaggtgagccactgcgcaagaattcagcttattgtgtgcagccagcatgcatcgagccctcttgtattcagccatcctgtgctgttactactacatgtttcgggcctcgcctcttttccagcaagtcaaagaaagaaaagaaatctaaaaatgaaataggtaaccaagttagcccattaccagagcttattgctgagcctactggagcacggtcaatgtcatttgtcgggactcacgagtacttagcacccgagataatcaaaggtgaaggacacggcagtgcagtagactggtggacctttggtatctttctatatgagttactgtttggcaaaacacccttcaagggatcaggaaatcgacaaactcttttcaacgttgttggtcagcccttgcggtttccagaatctccagtggtcagtttctcagctagagatcttatccgaggcttgctcgtgaaggagcctcaacatagactggcatacaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="85444" stop="82041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85145" g_stop="85064" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85063" i_stop="83010" i_length="2054">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83009" g_stop="82341" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="751" r_length="669" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E709959" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85145" e_stop="85064"/>
          <exon e_start="83009" e_stop="82341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGGAGTTCTGCCCAGGAGGAGACCTGCACACACTCAGACAAAGACAACCAGGGAAGCATTTTTCAGAACAAGCGGTGAAGTATGATACTTGATCTCTGACCTTACTGTCTTAAGATAGCTTGCTCTTCTTTCTTTTAAAAAAGTTGGCATATTTTGTTGCTTTCAGTCTGGAGTATTATTTTCACAATTTACAGCATTGACTGTATCTTTAACTGTTAGATCTAGATATGTTTTTGTTGTGGCTGTAGACATAATTAATCCAACATTATCCATTATTTCTTAATTTAAATTAATTGATCTAACAGATATACTTATAACAATCAAGAGATATAAATGCCTTTACATGACATGATTTTCTTGGTGGTACCAATAAATTAAATTGAAGCAAACTGACTTGATATGCAAGTTCTTTCAAGTCCCTAAAGCAGTCGGATTGCATGTACTAACCAGTTATATCATTTACCTCTGGACAATGAAATGCATGTTGACCCCACTGTTAGTTCAAAAACCTTGTTATTTGATATTCTGACTTTATTATTTGCGCAGTAGTTTAGATTCTAAATCTTAACTACTTTTGGGATCATTTGCCTAGTTTTTTTCTTCCATAGGTGGTTTCATTTGCTTGTGTTTTTCTTACTAAGCCAAGTGGATGTTTAAACTGGTTTATATTCTTCTTCTGTGTTGGATCTATACGAAGTTGTTTTGGGTCTCTGTTGCCTACTGCATGTTCTTCTTGTCAATTATTTCCAATTCGATAGCTGCAAGTTAGTGTGACCACTACTTTAATTGGACATGATAAATGCTGTTTATTTTACTTTTAAGGTTTGGTGCCTGCAGGGTCATAACATATTTTTTGTAGTCATTAAGATACTGTTTGTTGTGTGGTCCTGTAGTTGGGGTAATCAGCTAATGTGCAGGCTGGTGTTTTTCTCTTTTTGGCAAATGAATCCTTCAGTTTAGTAGTCATCCACCTAATTTTAAATATTAAGAAACATTATTGATTTGTTGGTTGGTGTTGGATTATTGAGAGACTGATTAATTCTCACTTTGACTCATTCCTGTGACCTCCTTTCATTTTGTCATTTGCTTTAAAACATTGACCTCTTTAGTGTAATGGGGAACTTTTATTTGGTGAAGTTAATAGTTGTAACAGAAATATTTACTTTGTCAAAAATATTAGATTCAATTGTATGTGACATCTTAAAATTTTCCTGGCTGTTCTGCTATTAATTTGATATCTCTAGCAAACTCTTATTATAACCCATCCAACTGTATTTTCAATGTCTGCATAACTCAAATTCGACTAGTTTATACAAGACGGAGGAAGCATCTAAATAACCAGATCTAGGGCAAGTGTTGTGTTCCCCTTCCCTAGAATAAATGGGGAAAATGTTGAAACCCAAATAAGGGATGATACTTTGGACCAGTGAAAAGGTTGTCACCGTCGGACTAAACCATTACCATTCAGTAATACTCTTTTTTTTGGGTGGTGGTGGTGGTGGTGGGTGGGAGACACCTTTCTGGCAACGTCTTTGTTTGATGATTCTTGCCCGTCTCCCTAGTCACTGGAATCATGAAAGCTGTAACCAGCTCTTCAATTTTGTTGGCAGTTCTCTCTTCCTTGCAATTAAAATCTTCCCACCTTGCACCCAAGGGTGTGGCCTAGTGGTCAATAAAGTGGGTTGAGAACCATGTGGTCTCTGGTTCAAAACCAATTGGAAGCAAAAAAACTAGCAGGTTTGTTCTCATCTGTTCAAGCCTTGATAGACAGTTTATCTGTTGGCTGTGCTAGTGGGAGGGGTCTAAAAAATTGCATACCATGCATATGAAGAAAGTTTTAAATTAGTGTATTCATACTTGTTTCTTGACATGATTTGAATGGGATGTTGCATTATTTCGGAATATATGAAGTATCATAAATATTTGTGTATTTTTCTTTGGAGTTGAATAGTAGATATAAGCCTTCGGTTGCTTGTGCTAAAACTCCAATGAAGAAAGCAGGAAGAAATTATCAGGATTTTCATTTCTGCTATCTGCCTTTACTCAATTCCAAACTCATGAACGAAAAGTATACTATGTTGGTGGCTGCAGTTTATTGATTTGCTTGTGTTGTATTGTATCTTAAAATTGCAGATTCTACGTAGCAGAAGTGCTCCTTTCCCTGGAATACCTTCACATGCTTGGCATTGTCTATCGTGATCTCAAGCCAGAAAATGTGCTTGTCAGAGAAGATGGACATATAATGCTCTCTGATTTTGACCTCTCCCTTCGCTGTGCTGTCAGTCCAACACTAGTCAAGTCATCATCTCTTGAAGGTGAGCCACTGCGCAAGAATTCAGCTTATTGTGTGCAGCCAGCATGCATCGAGCCCTCTTGTATTCAGCCATCCTGTGCTGTTACTACTACATGTTTCGGGCCTCGCCTCTTTTCCAGCAAGTCAAAGAAAGAAAAGAAATCTAAAAATGAAATAGGTAACCAAGTTAGCCCATTACCAGAGCTTATTGCTGAGCCTACTGGAGCACGGTCAATGTCATTTGTCGGGACTCACGAGTACTTAGCACCCGAGATAATCAAAGGTGAAGGACACGGCAGTGCAGTAGACTGGTGGACCTTTGGTATCTTTCTATATGAGTTACTGTTTGGCAAAACACCCTTCAAGGGATCAGGAAATCGACAAACTCTTTTCAACGTTGTTGGTCAGCCCTTGCGGTTTCCAGAATCTCCAGTGGTCAGTTTCTCAGCTAGAGATCTTATCCGAGGCTTGCTCGTGAAGGAGCCTCAGCATAGACTGGCATACAAAAG</genome_strand>
        <mrna_strand>CGATGGAGTTCTGCCCAGGAGGAGACCTGCACACACTCAGACAAAGACAACCAGGGAAGCATTTTTCAGAACAAGCGGTGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTACGTAGCAGAAGTGCTCCTTTCCCTGGAATACCTTCACATGCTTGGCATTGTCTATCGTGATCTCAAGCCAGAAAATGTGCTTGTCAGAGAAGATGGACATATAATGCTCTCTGATTTTGACCTCTCCCTTCGCTGTGCTGTCAGTCCAACACTAGTCAAGTCATCATCTCTTGAAGGTGAGCCACTGCGCAAGAATTCAGCTTATTGTGTGCAGCCAGCATGCATCGAGCCCTCTTGTATTCAGCCATCCTGTGCTGTTACTACTACATGTTTCGGGCCTCGCCTCTTTTCCAGCAAGTCAAAGAAAGAAAAGAAATCTAAAAATGAAATAGGTAACCAAGTTAGCCCATTACCAGAGCTTATTGCTGAGCCTACTGGAGCACGGTCAATGTCATTTGTCGGGACTCACGAGTACTTAGCACCCGAGATAATCAAAGGTGAAGGACACGGCAGTGCAGTAGACTGGTGGACCTTTGGTATCTTTCTATATGAGTTACTGTTTGGCAAAACACCCTTCAAGGGATCAGGAAATCGACAAACTCTTTTCAACGTTGTTGGTCAGCCCTTGCGGTTTCCAGAATCTCCAGTGGTCAGTTTCTCAGCTAGAGATCTTATCCGAGGCTTGCTCGTGAAGGAGCCTCAACATAGACTGGCATACAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E548324" ref_strand="+" ref_description="SGN-E548324 [TUS-60-C11]">
      <seq>cccaacattatatagccattttgaaacagaaaagttctcatgtctagtgatggagttctgcccaggaggagacctgcacacactcagacaaagacaaccagggaagcatttttcagaacaagcggtgaaattctacgtagcagaagtgctcctttccctggaataccttcacatgcttggcattgtctatcgtgatctcaagccagaaaatgtgcttgtcagagaagatggacatataatgctctctgattttgacctctcccttcgctgtgctgtcagtccaacactagtcaagtcatcatctcttgaaggtgagccactgcgcaagaattcagcttattgtgtgcagccagcatgcatcgagccctcttgtattcagccatcctgtgctgttactactacatgtttcgggcctcgcctcttttccagcaagtcaaagaaagaaaagaaatctaaaaatgaaataggtaaccaagttagcccattaccagagcttattgctgagcctactggagcacggtcaatgtcatttgtcgggactcacgagtacttagcacccgagataatcaaaggtgaaggacacggcagtgcagtagactggtggacctttggtatctttctatatgagttactgtttggcaaaacacccttcaagggatcaggaaatcgacaaactcttttcaacgttgttggtcagcccttgcggtttccagaatctccagtggtcangttctcagctagagatcttatccgaggcttgctcgtngaggagcctcagcatagactggcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="85492" stop="82046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85192" g_stop="85064" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85063" i_stop="83010" i_length="2054">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83009" g_stop="82346" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="793" r_length="664" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E548324" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85192" e_stop="85064"/>
          <exon e_start="83009" e_stop="82346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAACATTATATAGCCATTTTGAAACAGAAAAGTTCTCATGTCTAGTGATGGAGTTCTGCCCAGGAGGAGACCTGCACACACTCAGACAAAGACAACCAGGGAAGCATTTTTCAGAACAAGCGGTGAAGTATGATACTTGATCTCTGACCTTACTGTCTTAAGATAGCTTGCTCTTCTTTCTTTTAAAAAAGTTGGCATATTTTGTTGCTTTCAGTCTGGAGTATTATTTTCACAATTTACAGCATTGACTGTATCTTTAACTGTTAGATCTAGATATGTTTTTGTTGTGGCTGTAGACATAATTAATCCAACATTATCCATTATTTCTTAATTTAAATTAATTGATCTAACAGATATACTTATAACAATCAAGAGATATAAATGCCTTTACATGACATGATTTTCTTGGTGGTACCAATAAATTAAATTGAAGCAAACTGACTTGATATGCAAGTTCTTTCAAGTCCCTAAAGCAGTCGGATTGCATGTACTAACCAGTTATATCATTTACCTCTGGACAATGAAATGCATGTTGACCCCACTGTTAGTTCAAAAACCTTGTTATTTGATATTCTGACTTTATTATTTGCGCAGTAGTTTAGATTCTAAATCTTAACTACTTTTGGGATCATTTGCCTAGTTTTTTTCTTCCATAGGTGGTTTCATTTGCTTGTGTTTTTCTTACTAAGCCAAGTGGATGTTTAAACTGGTTTATATTCTTCTTCTGTGTTGGATCTATACGAAGTTGTTTTGGGTCTCTGTTGCCTACTGCATGTTCTTCTTGTCAATTATTTCCAATTCGATAGCTGCAAGTTAGTGTGACCACTACTTTAATTGGACATGATAAATGCTGTTTATTTTACTTTTAAGGTTTGGTGCCTGCAGGGTCATAACATATTTTTTGTAGTCATTAAGATACTGTTTGTTGTGTGGTCCTGTAGTTGGGGTAATCAGCTAATGTGCAGGCTGGTGTTTTTCTCTTTTTGGCAAATGAATCCTTCAGTTTAGTAGTCATCCACCTAATTTTAAATATTAAGAAACATTATTGATTTGTTGGTTGGTGTTGGATTATTGAGAGACTGATTAATTCTCACTTTGACTCATTCCTGTGACCTCCTTTCATTTTGTCATTTGCTTTAAAACATTGACCTCTTTAGTGTAATGGGGAACTTTTATTTGGTGAAGTTAATAGTTGTAACAGAAATATTTACTTTGTCAAAAATATTAGATTCAATTGTATGTGACATCTTAAAATTTTCCTGGCTGTTCTGCTATTAATTTGATATCTCTAGCAAACTCTTATTATAACCCATCCAACTGTATTTTCAATGTCTGCATAACTCAAATTCGACTAGTTTATACAAGACGGAGGAAGCATCTAAATAACCAGATCTAGGGCAAGTGTTGTGTTCCCCTTCCCTAGAATAAATGGGGAAAATGTTGAAACCCAAATAAGGGATGATACTTTGGACCAGTGAAAAGGTTGTCACCGTCGGACTAAACCATTACCATTCAGTAATACTCTTTTTTTTGGGTGGTGGTGGTGGTGGTGGGTGGGAGACACCTTTCTGGCAACGTCTTTGTTTGATGATTCTTGCCCGTCTCCCTAGTCACTGGAATCATGAAAGCTGTAACCAGCTCTTCAATTTTGTTGGCAGTTCTCTCTTCCTTGCAATTAAAATCTTCCCACCTTGCACCCAAGGGTGTGGCCTAGTGGTCAATAAAGTGGGTTGAGAACCATGTGGTCTCTGGTTCAAAACCAATTGGAAGCAAAAAAACTAGCAGGTTTGTTCTCATCTGTTCAAGCCTTGATAGACAGTTTATCTGTTGGCTGTGCTAGTGGGAGGGGTCTAAAAAATTGCATACCATGCATATGAAGAAAGTTTTAAATTAGTGTATTCATACTTGTTTCTTGACATGATTTGAATGGGATGTTGCATTATTTCGGAATATATGAAGTATCATAAATATTTGTGTATTTTTCTTTGGAGTTGAATAGTAGATATAAGCCTTCGGTTGCTTGTGCTAAAACTCCAATGAAGAAAGCAGGAAGAAATTATCAGGATTTTCATTTCTGCTATCTGCCTTTACTCAATTCCAAACTCATGAACGAAAAGTATACTATGTTGGTGGCTGCAGTTTATTGATTTGCTTGTGTTGTATTGTATCTTAAAATTGCAGATTCTACGTAGCAGAAGTGCTCCTTTCCCTGGAATACCTTCACATGCTTGGCATTGTCTATCGTGATCTCAAGCCAGAAAATGTGCTTGTCAGAGAAGATGGACATATAATGCTCTCTGATTTTGACCTCTCCCTTCGCTGTGCTGTCAGTCCAACACTAGTCAAGTCATCATCTCTTGAAGGTGAGCCACTGCGCAAGAATTCAGCTTATTGTGTGCAGCCAGCATGCATCGAGCCCTCTTGTATTCAGCCATCCTGTGCTGTTACTACTACATGTTTCGGGCCTCGCCTCTTTTCCAGCAAGTCAAAGAAAGAAAAGAAATCTAAAAATGAAATAGGTAACCAAGTTAGCCCATTACCAGAGCTTATTGCTGAGCCTACTGGAGCACGGTCAATGTCATTTGTCGGGACTCACGAGTACTTAGCACCCGAGATAATCAAAGGTGAAGGACACGGCAGTGCAGTAGACTGGTGGACCTTTGGTATCTTTCTATATGAGTTACTGTTTGGCAAAACACCCTTCAAGGGATCAGGAAATCGACAAACTCTTTTCAACGTTGTTGGTCAGCCCTTGCGGTTTCCAGAATCTCCAGTGGTCAGTTTCTCAGCTAGAGATCTTATCCGAGGCTTGCTCGTGAAGGAGCCTCAGCATAGACTGGCATAC</genome_strand>
        <mrna_strand>CCCAACATTATATAGCCATTTTGAAACAGAAAAGTTCTCATGTCTAGTGATGGAGTTCTGCCCAGGAGGAGACCTGCACACACTCAGACAAAGACAACCAGGGAAGCATTTTTCAGAACAAGCGGTGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTACGTAGCAGAAGTGCTCCTTTCCCTGGAATACCTTCACATGCTTGGCATTGTCTATCGTGATCTCAAGCCAGAAAATGTGCTTGTCAGAGAAGATGGACATATAATGCTCTCTGATTTTGACCTCTCCCTTCGCTGTGCTGTCAGTCCAACACTAGTCAAGTCATCATCTCTTGAAGGTGAGCCACTGCGCAAGAATTCAGCTTATTGTGTGCAGCCAGCATGCATCGAGCCCTCTTGTATTCAGCCATCCTGTGCTGTTACTACTACATGTTTCGGGCCTCGCCTCTTTTCCAGCAAGTCAAAGAAAGAAAAGAAATCTAAAAATGAAATAGGTAACCAAGTTAGCCCATTACCAGAGCTTATTGCTGAGCCTACTGGAGCACGGTCAATGTCATTTGTCGGGACTCACGAGTACTTAGCACCCGAGATAATCAAAGGTGAAGGACACGGCAGTGCAGTAGACTGGTGGACCTTTGGTATCTTTCTATATGAGTTACTGTTTGGCAAAACACCCTTCAAGGGATCAGGAAATCGACAAACTCTTTTCAACGTTGTTGGTCAGCCCTTGCGGTTTCCAGAATCTCCAGTGGTCANGTTCTCAGCTAGAGATCTTATCCGAGGCTTGCTCGTNGAGGAGCCTCAGCATAGACTGGCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E287558" ref_strand="+" ref_description="SGN-E287558 [cLES-9-N5]">
      <seq>ccaacattatatagccattttgaaacagaaaagttctcatgtctagtgatggagttctgcccaggaggagacctgcacacactcagacaaagacaaccagggaagcatttttcagaacaagcggtgaaattctacgtagcagaagtgctcctttccctggaataccttcacatgcttggcattgtctatcgtgatctcaagccagaaaatgtgcttgtcagagaagatggacatataatgctctctgattttgacctctcccttcgctgtgctgtcagtccaacactagtcaagtcatcatctcttgaaggtgagccactgcgcaagaattcagcttattgtgtgcagccagcatgcatcgagccctcttgtattcagccatcctgtgctgttactactacatgtttcgggcctcgcctcttttccagcaagtcaaagaaagaaaagaaatctaaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="85491" stop="82378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85191" g_stop="85064" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85063" i_stop="83010" i_length="2054">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83009" g_stop="82678" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="460" r_length="332" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E287558" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85191" e_stop="85064"/>
          <exon e_start="83009" e_stop="82678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACATTATATAGCCATTTTGAAACAGAAAAGTTCTCATGTCTAGTGATGGAGTTCTGCCCAGGAGGAGACCTGCACACACTCAGACAAAGACAACCAGGGAAGCATTTTTCAGAACAAGCGGTGAAGTATGATACTTGATCTCTGACCTTACTGTCTTAAGATAGCTTGCTCTTCTTTCTTTTAAAAAAGTTGGCATATTTTGTTGCTTTCAGTCTGGAGTATTATTTTCACAATTTACAGCATTGACTGTATCTTTAACTGTTAGATCTAGATATGTTTTTGTTGTGGCTGTAGACATAATTAATCCAACATTATCCATTATTTCTTAATTTAAATTAATTGATCTAACAGATATACTTATAACAATCAAGAGATATAAATGCCTTTACATGACATGATTTTCTTGGTGGTACCAATAAATTAAATTGAAGCAAACTGACTTGATATGCAAGTTCTTTCAAGTCCCTAAAGCAGTCGGATTGCATGTACTAACCAGTTATATCATTTACCTCTGGACAATGAAATGCATGTTGACCCCACTGTTAGTTCAAAAACCTTGTTATTTGATATTCTGACTTTATTATTTGCGCAGTAGTTTAGATTCTAAATCTTAACTACTTTTGGGATCATTTGCCTAGTTTTTTTCTTCCATAGGTGGTTTCATTTGCTTGTGTTTTTCTTACTAAGCCAAGTGGATGTTTAAACTGGTTTATATTCTTCTTCTGTGTTGGATCTATACGAAGTTGTTTTGGGTCTCTGTTGCCTACTGCATGTTCTTCTTGTCAATTATTTCCAATTCGATAGCTGCAAGTTAGTGTGACCACTACTTTAATTGGACATGATAAATGCTGTTTATTTTACTTTTAAGGTTTGGTGCCTGCAGGGTCATAACATATTTTTTGTAGTCATTAAGATACTGTTTGTTGTGTGGTCCTGTAGTTGGGGTAATCAGCTAATGTGCAGGCTGGTGTTTTTCTCTTTTTGGCAAATGAATCCTTCAGTTTAGTAGTCATCCACCTAATTTTAAATATTAAGAAACATTATTGATTTGTTGGTTGGTGTTGGATTATTGAGAGACTGATTAATTCTCACTTTGACTCATTCCTGTGACCTCCTTTCATTTTGTCATTTGCTTTAAAACATTGACCTCTTTAGTGTAATGGGGAACTTTTATTTGGTGAAGTTAATAGTTGTAACAGAAATATTTACTTTGTCAAAAATATTAGATTCAATTGTATGTGACATCTTAAAATTTTCCTGGCTGTTCTGCTATTAATTTGATATCTCTAGCAAACTCTTATTATAACCCATCCAACTGTATTTTCAATGTCTGCATAACTCAAATTCGACTAGTTTATACAAGACGGAGGAAGCATCTAAATAACCAGATCTAGGGCAAGTGTTGTGTTCCCCTTCCCTAGAATAAATGGGGAAAATGTTGAAACCCAAATAAGGGATGATACTTTGGACCAGTGAAAAGGTTGTCACCGTCGGACTAAACCATTACCATTCAGTAATACTCTTTTTTTTGGGTGGTGGTGGTGGTGGTGGGTGGGAGACACCTTTCTGGCAACGTCTTTGTTTGATGATTCTTGCCCGTCTCCCTAGTCACTGGAATCATGAAAGCTGTAACCAGCTCTTCAATTTTGTTGGCAGTTCTCTCTTCCTTGCAATTAAAATCTTCCCACCTTGCACCCAAGGGTGTGGCCTAGTGGTCAATAAAGTGGGTTGAGAACCATGTGGTCTCTGGTTCAAAACCAATTGGAAGCAAAAAAACTAGCAGGTTTGTTCTCATCTGTTCAAGCCTTGATAGACAGTTTATCTGTTGGCTGTGCTAGTGGGAGGGGTCTAAAAAATTGCATACCATGCATATGAAGAAAGTTTTAAATTAGTGTATTCATACTTGTTTCTTGACATGATTTGAATGGGATGTTGCATTATTTCGGAATATATGAAGTATCATAAATATTTGTGTATTTTTCTTTGGAGTTGAATAGTAGATATAAGCCTTCGGTTGCTTGTGCTAAAACTCCAATGAAGAAAGCAGGAAGAAATTATCAGGATTTTCATTTCTGCTATCTGCCTTTACTCAATTCCAAACTCATGAACGAAAAGTATACTATGTTGGTGGCTGCAGTTTATTGATTTGCTTGTGTTGTATTGTATCTTAAAATTGCAGATTCTACGTAGCAGAAGTGCTCCTTTCCCTGGAATACCTTCACATGCTTGGCATTGTCTATCGTGATCTCAAGCCAGAAAATGTGCTTGTCAGAGAAGATGGACATATAATGCTCTCTGATTTTGACCTCTCCCTTCGCTGTGCTGTCAGTCCAACACTAGTCAAGTCATCATCTCTTGAAGGTGAGCCACTGCGCAAGAATTCAGCTTATTGTGTGCAGCCAGCATGCATCGAGCCCTCTTGTATTCAGCCATCCTGTGCTGTTACTACTACATGTTTCGGGCCTCGCCTCTTTTCCAGCAAGTCAAAGAAAGAAAAGAAATCTAAAAATG</genome_strand>
        <mrna_strand>CCAACATTATATAGCCATTTTGAAACAGAAAAGTTCTCATGTCTAGTGATGGAGTTCTGCCCAGGAGGAGACCTGCACACACTCAGACAAAGACAACCAGGGAAGCATTTTTCAGAACAAGCGGTGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTACGTAGCAGAAGTGCTCCTTTCCCTGGAATACCTTCACATGCTTGGCATTGTCTATCGTGATCTCAAGCCAGAAAATGTGCTTGTCAGAGAAGATGGACATATAATGCTCTCTGATTTTGACCTCTCCCTTCGCTGTGCTGTCAGTCCAACACTAGTCAAGTCATCATCTCTTGAAGGTGAGCCACTGCGCAAGAATTCAGCTTATTGTGTGCAGCCAGCATGCATCGAGCCCTCTTGTATTCAGCCATCCTGTGCTGTTACTACTACATGTTTCGGGCCTCGCCTCTTTTCCAGCAAGTCAAAGAAAGAAAAGAAATCTAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E262441" ref_strand="+" ref_description="SGN-E262441 [cLEG-56-F15]">
      <seq>atgggaagccattcaagctatccggactaaagatggggcattggatttgaggcacttccggttgctgaagaagttgggaagtggtgatattggaagtgtgtatctgtctgagttgtgtggaacaaagtgttattttgccatgaaagttatggataaggcgtcgttagctagtcgtaagaaattgcttcgtgcacagacagaaagagagattttgcagtccctggaagatccatttctcccaacattatatagccattttgaaacagaaaagttctcatgtctagtgatggagttctgcccaggaggagacctgcacacactcagacaaagacaaccagggaagcatttttcagaacaagcggtgaaattctacgtagcagaagtgctcctttccctggaataccttcacatgcttggcattgtctatcgtgatctcaagccagaaaatgtgcttgtcagagaagatggacatataatgctctctgattttgacctctcccttcgctgtgctgtcagtccaacactagtcaagtcatcatctcttgaaggtgagccactgcgcaagaattcagcttattgtgtgcagccagcatgcatcgagccctcttgaattcagccatcctgtgctgttactactacatgtttccggcctcgcctcttttccagcaagtcaaaggaagaaaagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="85729" stop="82387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85429" g_stop="85064" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85063" i_stop="83010" i_length="2054">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83009" g_stop="82687" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="689" r_length="323" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E262441" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85429" e_stop="85064"/>
          <exon e_start="83009" e_stop="82687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGAAGCCATTCAAGCTATCCGGACTAAAGATGGGGCATTGGATTTGAGGCACTTCCGGTTGCTGAAGAAGTTGGGAAGTGGTGATATTGGAAGTGTGTATCTGTCTGAGTTGTGTGGAACAAAGTGTTATTTTGCCATGAAAGTTATGGATAAGGCGTCGTTAGCTAGTCGTAAGAAATTGCTTCGTGCACAGACAGAAAGAGAGATTTTGCAGTCCCTGGACCATCCATTTCTCCCAACATTATATAGCCATTTTGAAACAGAAAAGTTCTCATGTCTAGTGATGGAGTTCTGCCCAGGAGGAGACCTGCACACACTCAGACAAAGACAACCAGGGAAGCATTTTTCAGAACAAGCGGTGAAGTATGATACTTGATCTCTGACCTTACTGTCTTAAGATAGCTTGCTCTTCTTTCTTTTAAAAAAGTTGGCATATTTTGTTGCTTTCAGTCTGGAGTATTATTTTCACAATTTACAGCATTGACTGTATCTTTAACTGTTAGATCTAGATATGTTTTTGTTGTGGCTGTAGACATAATTAATCCAACATTATCCATTATTTCTTAATTTAAATTAATTGATCTAACAGATATACTTATAACAATCAAGAGATATAAATGCCTTTACATGACATGATTTTCTTGGTGGTACCAATAAATTAAATTGAAGCAAACTGACTTGATATGCAAGTTCTTTCAAGTCCCTAAAGCAGTCGGATTGCATGTACTAACCAGTTATATCATTTACCTCTGGACAATGAAATGCATGTTGACCCCACTGTTAGTTCAAAAACCTTGTTATTTGATATTCTGACTTTATTATTTGCGCAGTAGTTTAGATTCTAAATCTTAACTACTTTTGGGATCATTTGCCTAGTTTTTTTCTTCCATAGGTGGTTTCATTTGCTTGTGTTTTTCTTACTAAGCCAAGTGGATGTTTAAACTGGTTTATATTCTTCTTCTGTGTTGGATCTATACGAAGTTGTTTTGGGTCTCTGTTGCCTACTGCATGTTCTTCTTGTCAATTATTTCCAATTCGATAGCTGCAAGTTAGTGTGACCACTACTTTAATTGGACATGATAAATGCTGTTTATTTTACTTTTAAGGTTTGGTGCCTGCAGGGTCATAACATATTTTTTGTAGTCATTAAGATACTGTTTGTTGTGTGGTCCTGTAGTTGGGGTAATCAGCTAATGTGCAGGCTGGTGTTTTTCTCTTTTTGGCAAATGAATCCTTCAGTTTAGTAGTCATCCACCTAATTTTAAATATTAAGAAACATTATTGATTTGTTGGTTGGTGTTGGATTATTGAGAGACTGATTAATTCTCACTTTGACTCATTCCTGTGACCTCCTTTCATTTTGTCATTTGCTTTAAAACATTGACCTCTTTAGTGTAATGGGGAACTTTTATTTGGTGAAGTTAATAGTTGTAACAGAAATATTTACTTTGTCAAAAATATTAGATTCAATTGTATGTGACATCTTAAAATTTTCCTGGCTGTTCTGCTATTAATTTGATATCTCTAGCAAACTCTTATTATAACCCATCCAACTGTATTTTCAATGTCTGCATAACTCAAATTCGACTAGTTTATACAAGACGGAGGAAGCATCTAAATAACCAGATCTAGGGCAAGTGTTGTGTTCCCCTTCCCTAGAATAAATGGGGAAAATGTTGAAACCCAAATAAGGGATGATACTTTGGACCAGTGAAAAGGTTGTCACCGTCGGACTAAACCATTACCATTCAGTAATACTCTTTTTTTTGGGTGGTGGTGGTGGTGGTGGGTGGGAGACACCTTTCTGGCAACGTCTTTGTTTGATGATTCTTGCCCGTCTCCCTAGTCACTGGAATCATGAAAGCTGTAACCAGCTCTTCAATTTTGTTGGCAGTTCTCTCTTCCTTGCAATTAAAATCTTCCCACCTTGCACCCAAGGGTGTGGCCTAGTGGTCAATAAAGTGGGTTGAGAACCATGTGGTCTCTGGTTCAAAACCAATTGGAAGCAAAAAAACTAGCAGGTTTGTTCTCATCTGTTCAAGCCTTGATAGACAGTTTATCTGTTGGCTGTGCTAGTGGGAGGGGTCTAAAAAATTGCATACCATGCATATGAAGAAAGTTTTAAATTAGTGTATTCATACTTGTTTCTTGACATGATTTGAATGGGATGTTGCATTATTTCGGAATATATGAAGTATCATAAATATTTGTGTATTTTTCTTTGGAGTTGAATAGTAGATATAAGCCTTCGGTTGCTTGTGCTAAAACTCCAATGAAGAAAGCAGGAAGAAATTATCAGGATTTTCATTTCTGCTATCTGCCTTTACTCAATTCCAAACTCATGAACGAAAAGTATACTATGTTGGTGGCTGCAGTTTATTGATTTGCTTGTGTTGTATTGTATCTTAAAATTGCAGATTCTACGTAGCAGAAGTGCTCCTTTCCCTGGAATACCTTCACATGCTTGGCATTGTCTATCGTGATCTCAAGCCAGAAAATGTGCTTGTCAGAGAAGATGGACATATAATGCTCTCTGATTTTGACCTCTCCCTTCGCTGTGCTGTCAGTCCAACACTAGTCAAGTCATCATCTCTTGAAGGTGAGCCACTGCGCAAGAATTCAGCTTATTGTGTGCAGCCAGCATGCATCGAGCCCTCTTGTATTCAGCCATCCTGTGCTGTTACTACTACATGTTTCGGGCCTCGCCTCTTTTCCAGCAAGTCAAAGAAAGAAAAGAAAT</genome_strand>
        <mrna_strand>ATGGGAAGCCATTCAAGCTATCCGGACTAAAGATGGGGCATTGGATTTGAGGCACTTCCGGTTGCTGAAGAAGTTGGGAAGTGGTGATATTGGAAGTGTGTATCTGTCTGAGTTGTGTGGAACAAAGTGTTATTTTGCCATGAAAGTTATGGATAAGGCGTCGTTAGCTAGTCGTAAGAAATTGCTTCGTGCACAGACAGAAAGAGAGATTTTGCAGTCCCTGGAAGATCCATTTCTCCCAACATTATATAGCCATTTTGAAACAGAAAAGTTCTCATGTCTAGTGATGGAGTTCTGCCCAGGAGGAGACCTGCACACACTCAGACAAAGACAACCAGGGAAGCATTTTTCAGAACAAGCGGTGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTACGTAGCAGAAGTGCTCCTTTCCCTGGAATACCTTCACATGCTTGGCATTGTCTATCGTGATCTCAAGCCAGAAAATGTGCTTGTCAGAGAAGATGGACATATAATGCTCTCTGATTTTGACCTCTCCCTTCGCTGTGCTGTCAGTCCAACACTAGTCAAGTCATCATCTCTTGAAGGTGAGCCACTGCGCAAGAATTCAGCTTATTGTGTGCAGCCAGCATGCATCGAGCCCTCTTGAATTCAGCCATCCTGTGCTGTTACTACTACATGTTTCCGGCCTCGCCTCTTTTCCAGCAAGTCAAAGGAAGAAAAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E704644" ref_strand="+" ref_description="SGN-E704644 [FA24DE01]">
      <seq>ggctagcagtattgcaaaaacaagtggaagtgccaaaattagtgatcgagcagattttcttgagagtggtaagagcagcatctgtagggggagcacaggaactgacgtaagtgaggagagtacttctagcagcttgagcagcagcgttaacaaaccccacaaagctaatgactcaagatgggaagccattcaagctatccggactaaagatggggcattggatttgaggcacttccggttgctgaagaagttgggaagtggtgatattggaagtgtgtatctgtctgagttgtgtggaacaaagtgttattttgccatgaaagttatggataaggcgtcgttagctagtcgtaagaaattgcttcgtgcacagacagaaagagagattttgcagtccctggaccatccatttctcccaacattatatagccattttgaaccagaaaagttctcatgtctagtgatggagttctgcccaggaggagacctgcacacactcagacaaagacaaccagggaagcatttttcagaacaagcggtgaaattctacgtagcagaagtgctcctttccctggaataccttcacatgcttggcattgtctatcgtgatctcaagccagaaaatgtgcttgtcagagaagatggacatataatgctctctgattttgacctctcccttcgctgtgctgtcagtccaacactagtcaagtcatcatctcttgaaggtgagccactgcgcaagaattcagcttattgtgtgcagccagcatgcatcgagccctcttgtattcagccatcctgtgctgttactactacatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="85906" stop="82431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85606" g_stop="85064" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85063" i_stop="83010" i_length="2054">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83009" g_stop="82731" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="822" r_length="279" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E704644" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85606" e_stop="85064"/>
          <exon e_start="83009" e_stop="82731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTAGCAGTATTGCAAAAACAAGTGGAAGTGCCAAAATTAGTGATCGAGCAGATTTTCTTGAGAGTGGTAAGAGCAGCATCTGTAGGGGGAGCACAGGAACTGACGTAAGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTTAACAAACCCCACAAAGCTAATGACTCAAGATGGGAAGCCATTCAAGCTATCCGGACTAAAGATGGGGCATTGGATTTGAGGCACTTCCGGTTGCTGAAGAAGTTGGGAAGTGGTGATATTGGAAGTGTGTATCTGTCTGAGTTGTGTGGAACAAAGTGTTATTTTGCCATGAAAGTTATGGATAAGGCGTCGTTAGCTAGTCGTAAGAAATTGCTTCGTGCACAGACAGAAAGAGAGATTTTGCAGTCCCTGGACCATCCATTTCTCCCAACATTATATAGCCATTTTGAAACAGAAAAGTTCTCATGTCTAGTGATGGAGTTCTGCCCAGGAGGAGACCTGCACACACTCAGACAAAGACAACCAGGGAAGCATTTTTCAGAACAAGCGGTGAAGTATGATACTTGATCTCTGACCTTACTGTCTTAAGATAGCTTGCTCTTCTTTCTTTTAAAAAAGTTGGCATATTTTGTTGCTTTCAGTCTGGAGTATTATTTTCACAATTTACAGCATTGACTGTATCTTTAACTGTTAGATCTAGATATGTTTTTGTTGTGGCTGTAGACATAATTAATCCAACATTATCCATTATTTCTTAATTTAAATTAATTGATCTAACAGATATACTTATAACAATCAAGAGATATAAATGCCTTTACATGACATGATTTTCTTGGTGGTACCAATAAATTAAATTGAAGCAAACTGACTTGATATGCAAGTTCTTTCAAGTCCCTAAAGCAGTCGGATTGCATGTACTAACCAGTTATATCATTTACCTCTGGACAATGAAATGCATGTTGACCCCACTGTTAGTTCAAAAACCTTGTTATTTGATATTCTGACTTTATTATTTGCGCAGTAGTTTAGATTCTAAATCTTAACTACTTTTGGGATCATTTGCCTAGTTTTTTTCTTCCATAGGTGGTTTCATTTGCTTGTGTTTTTCTTACTAAGCCAAGTGGATGTTTAAACTGGTTTATATTCTTCTTCTGTGTTGGATCTATACGAAGTTGTTTTGGGTCTCTGTTGCCTACTGCATGTTCTTCTTGTCAATTATTTCCAATTCGATAGCTGCAAGTTAGTGTGACCACTACTTTAATTGGACATGATAAATGCTGTTTATTTTACTTTTAAGGTTTGGTGCCTGCAGGGTCATAACATATTTTTTGTAGTCATTAAGATACTGTTTGTTGTGTGGTCCTGTAGTTGGGGTAATCAGCTAATGTGCAGGCTGGTGTTTTTCTCTTTTTGGCAAATGAATCCTTCAGTTTAGTAGTCATCCACCTAATTTTAAATATTAAGAAACATTATTGATTTGTTGGTTGGTGTTGGATTATTGAGAGACTGATTAATTCTCACTTTGACTCATTCCTGTGACCTCCTTTCATTTTGTCATTTGCTTTAAAACATTGACCTCTTTAGTGTAATGGGGAACTTTTATTTGGTGAAGTTAATAGTTGTAACAGAAATATTTACTTTGTCAAAAATATTAGATTCAATTGTATGTGACATCTTAAAATTTTCCTGGCTGTTCTGCTATTAATTTGATATCTCTAGCAAACTCTTATTATAACCCATCCAACTGTATTTTCAATGTCTGCATAACTCAAATTCGACTAGTTTATACAAGACGGAGGAAGCATCTAAATAACCAGATCTAGGGCAAGTGTTGTGTTCCCCTTCCCTAGAATAAATGGGGAAAATGTTGAAACCCAAATAAGGGATGATACTTTGGACCAGTGAAAAGGTTGTCACCGTCGGACTAAACCATTACCATTCAGTAATACTCTTTTTTTTGGGTGGTGGTGGTGGTGGTGGGTGGGAGACACCTTTCTGGCAACGTCTTTGTTTGATGATTCTTGCCCGTCTCCCTAGTCACTGGAATCATGAAAGCTGTAACCAGCTCTTCAATTTTGTTGGCAGTTCTCTCTTCCTTGCAATTAAAATCTTCCCACCTTGCACCCAAGGGTGTGGCCTAGTGGTCAATAAAGTGGGTTGAGAACCATGTGGTCTCTGGTTCAAAACCAATTGGAAGCAAAAAAACTAGCAGGTTTGTTCTCATCTGTTCAAGCCTTGATAGACAGTTTATCTGTTGGCTGTGCTAGTGGGAGGGGTCTAAAAAATTGCATACCATGCATATGAAGAAAGTTTTAAATTAGTGTATTCATACTTGTTTCTTGACATGATTTGAATGGGATGTTGCATTATTTCGGAATATATGAAGTATCATAAATATTTGTGTATTTTTCTTTGGAGTTGAATAGTAGATATAAGCCTTCGGTTGCTTGTGCTAAAACTCCAATGAAGAAAGCAGGAAGAAATTATCAGGATTTTCATTTCTGCTATCTGCCTTTACTCAATTCCAAACTCATGAACGAAAAGTATACTATGTTGGTGGCTGCAGTTTATTGATTTGCTTGTGTTGTATTGTATCTTAAAATTGCAGATTCTACGTAGCAGAAGTGCTCCTTTCCCTGGAATACCTTCACATGCTTGGCATTGTCTATCGTGATCTCAAGCCAGAAAATGTGCTTGTCAGAGAAGATGGACATATAATGCTCTCTGATTTTGACCTCTCCCTTCGCTGTGCTGTCAGTCCAACACTAGTCAAGTCATCATCTCTTGAAGGTGAGCCACTGCGCAAGAATTCAGCTTATTGTGTGCAGCCAGCATGCATCGAGCCCTCTTGTATTCAGCCATCCTGTGCTGTTACTACTACATGTTT</genome_strand>
        <mrna_strand>GGCTAGCAGTATTGCAAAAACAAGTGGAAGTGCCAAAATTAGTGATCGAGCAGATTTTCTTGAGAGTGGTAAGAGCAGCATCTGTAGGGGGAGCACAGGAACTGACGTAAGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTTAACAAACCCCACAAAGCTAATGACTCAAGATGGGAAGCCATTCAAGCTATCCGGACTAAAGATGGGGCATTGGATTTGAGGCACTTCCGGTTGCTGAAGAAGTTGGGAAGTGGTGATATTGGAAGTGTGTATCTGTCTGAGTTGTGTGGAACAAAGTGTTATTTTGCCATGAAAGTTATGGATAAGGCGTCGTTAGCTAGTCGTAAGAAATTGCTTCGTGCACAGACAGAAAGAGAGATTTTGCAGTCCCTGGACCATCCATTTCTCCCAACATTATATAGCCATTTTGAACCAGAAAAGTTCTCATGTCTAGTGATGGAGTTCTGCCCAGGAGGAGACCTGCACACACTCAGACAAAGACAACCAGGGAAGCATTTTTCAGAACAAGCGGTGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTACGTAGCAGAAGTGCTCCTTTCCCTGGAATACCTTCACATGCTTGGCATTGTCTATCGTGATCTCAAGCCAGAAAATGTGCTTGTCAGAGAAGATGGACATATAATGCTCTCTGATTTTGACCTCTCCCTTCGCTGTGCTGTCAGTCCAACACTAGTCAAGTCATCATCTCTTGAAGGTGAGCCACTGCGCAAGAATTCAGCTTATTGTGTGCAGCCAGCATGCATCGAGCCCTCTTGTATTCAGCCATCCTGTGCTGTTACTACTACATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E257528" ref_strand="+" ref_description="SGN-E257528 [cLEG-45-K21]">
      <seq>tgacgtaagtgaggagagtacttctagcagcttgagcagcagcgttaacaaaccccacaaagctaatgactcaagatgggaagccattcaagctatccggactaaagatggggcattggatttgaggcacttccggttgctgaagaagttgggaagtggtgatattggaagtgtgtatctgtctgagttgtgtggaacaaagtgttattttgccatgaaagttatggataaggcgtcgttagctagtcgtaagaaattgcttcgtgcacagacagaaagagagattttgcagtccctggaccatccatttctcccaacattatatagccattttgaaacagaaaagttctcatgtctagtgatggagttctgcccaggaggagacctgcacacactcagacaaagacaaccagggaagcatttttcagaacaagcggtgaaattctacgtagcagaagtgctcctttccctggaataccttcacatgcttggcattgtctatcgtgatctcaagccagaaaatgtgcttgtcagagaagatggacatataatgctctctgattttgacctctcccttcgctgtgctgtcagtccaacactagtcaagtcatcatctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="85804" stop="82531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85504" g_stop="85064" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85063" i_stop="83010" i_length="2054">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83009" g_stop="82831" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="620" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E257528" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85504" e_stop="85064"/>
          <exon e_start="83009" e_stop="82831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGTAAGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTTAACAAACCCCACAAAGCTAATGACTCAAGATGGGAAGCCATTCAAGCTATCCGGACTAAAGATGGGGCATTGGATTTGAGGCACTTCCGGTTGCTGAAGAAGTTGGGAAGTGGTGATATTGGAAGTGTGTATCTGTCTGAGTTGTGTGGAACAAAGTGTTATTTTGCCATGAAAGTTATGGATAAGGCGTCGTTAGCTAGTCGTAAGAAATTGCTTCGTGCACAGACAGAAAGAGAGATTTTGCAGTCCCTGGACCATCCATTTCTCCCAACATTATATAGCCATTTTGAAACAGAAAAGTTCTCATGTCTAGTGATGGAGTTCTGCCCAGGAGGAGACCTGCACACACTCAGACAAAGACAACCAGGGAAGCATTTTTCAGAACAAGCGGTGAAGTATGATACTTGATCTCTGACCTTACTGTCTTAAGATAGCTTGCTCTTCTTTCTTTTAAAAAAGTTGGCATATTTTGTTGCTTTCAGTCTGGAGTATTATTTTCACAATTTACAGCATTGACTGTATCTTTAACTGTTAGATCTAGATATGTTTTTGTTGTGGCTGTAGACATAATTAATCCAACATTATCCATTATTTCTTAATTTAAATTAATTGATCTAACAGATATACTTATAACAATCAAGAGATATAAATGCCTTTACATGACATGATTTTCTTGGTGGTACCAATAAATTAAATTGAAGCAAACTGACTTGATATGCAAGTTCTTTCAAGTCCCTAAAGCAGTCGGATTGCATGTACTAACCAGTTATATCATTTACCTCTGGACAATGAAATGCATGTTGACCCCACTGTTAGTTCAAAAACCTTGTTATTTGATATTCTGACTTTATTATTTGCGCAGTAGTTTAGATTCTAAATCTTAACTACTTTTGGGATCATTTGCCTAGTTTTTTTCTTCCATAGGTGGTTTCATTTGCTTGTGTTTTTCTTACTAAGCCAAGTGGATGTTTAAACTGGTTTATATTCTTCTTCTGTGTTGGATCTATACGAAGTTGTTTTGGGTCTCTGTTGCCTACTGCATGTTCTTCTTGTCAATTATTTCCAATTCGATAGCTGCAAGTTAGTGTGACCACTACTTTAATTGGACATGATAAATGCTGTTTATTTTACTTTTAAGGTTTGGTGCCTGCAGGGTCATAACATATTTTTTGTAGTCATTAAGATACTGTTTGTTGTGTGGTCCTGTAGTTGGGGTAATCAGCTAATGTGCAGGCTGGTGTTTTTCTCTTTTTGGCAAATGAATCCTTCAGTTTAGTAGTCATCCACCTAATTTTAAATATTAAGAAACATTATTGATTTGTTGGTTGGTGTTGGATTATTGAGAGACTGATTAATTCTCACTTTGACTCATTCCTGTGACCTCCTTTCATTTTGTCATTTGCTTTAAAACATTGACCTCTTTAGTGTAATGGGGAACTTTTATTTGGTGAAGTTAATAGTTGTAACAGAAATATTTACTTTGTCAAAAATATTAGATTCAATTGTATGTGACATCTTAAAATTTTCCTGGCTGTTCTGCTATTAATTTGATATCTCTAGCAAACTCTTATTATAACCCATCCAACTGTATTTTCAATGTCTGCATAACTCAAATTCGACTAGTTTATACAAGACGGAGGAAGCATCTAAATAACCAGATCTAGGGCAAGTGTTGTGTTCCCCTTCCCTAGAATAAATGGGGAAAATGTTGAAACCCAAATAAGGGATGATACTTTGGACCAGTGAAAAGGTTGTCACCGTCGGACTAAACCATTACCATTCAGTAATACTCTTTTTTTTGGGTGGTGGTGGTGGTGGTGGGTGGGAGACACCTTTCTGGCAACGTCTTTGTTTGATGATTCTTGCCCGTCTCCCTAGTCACTGGAATCATGAAAGCTGTAACCAGCTCTTCAATTTTGTTGGCAGTTCTCTCTTCCTTGCAATTAAAATCTTCCCACCTTGCACCCAAGGGTGTGGCCTAGTGGTCAATAAAGTGGGTTGAGAACCATGTGGTCTCTGGTTCAAAACCAATTGGAAGCAAAAAAACTAGCAGGTTTGTTCTCATCTGTTCAAGCCTTGATAGACAGTTTATCTGTTGGCTGTGCTAGTGGGAGGGGTCTAAAAAATTGCATACCATGCATATGAAGAAAGTTTTAAATTAGTGTATTCATACTTGTTTCTTGACATGATTTGAATGGGATGTTGCATTATTTCGGAATATATGAAGTATCATAAATATTTGTGTATTTTTCTTTGGAGTTGAATAGTAGATATAAGCCTTCGGTTGCTTGTGCTAAAACTCCAATGAAGAAAGCAGGAAGAAATTATCAGGATTTTCATTTCTGCTATCTGCCTTTACTCAATTCCAAACTCATGAACGAAAAGTATACTATGTTGGTGGCTGCAGTTTATTGATTTGCTTGTGTTGTATTGTATCTTAAAATTGCAGATTCTACGTAGCAGAAGTGCTCCTTTCCCTGGAATACCTTCACATGCTTGGCATTGTCTATCGTGATCTCAAGCCAGAAAATGTGCTTGTCAGAGAAGATGGACATATAATGCTCTCTGATTTTGACCTCTCCCTTCGCTGTGCTGTCAGTCCAACACTAGTCAAGTCATCATCTCTTG</genome_strand>
        <mrna_strand>TGACGTAAGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTTAACAAACCCCACAAAGCTAATGACTCAAGATGGGAAGCCATTCAAGCTATCCGGACTAAAGATGGGGCATTGGATTTGAGGCACTTCCGGTTGCTGAAGAAGTTGGGAAGTGGTGATATTGGAAGTGTGTATCTGTCTGAGTTGTGTGGAACAAAGTGTTATTTTGCCATGAAAGTTATGGATAAGGCGTCGTTAGCTAGTCGTAAGAAATTGCTTCGTGCACAGACAGAAAGAGAGATTTTGCAGTCCCTGGACCATCCATTTCTCCCAACATTATATAGCCATTTTGAAACAGAAAAGTTCTCATGTCTAGTGATGGAGTTCTGCCCAGGAGGAGACCTGCACACACTCAGACAAAGACAACCAGGGAAGCATTTTTCAGAACAAGCGGTGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTACGTAGCAGAAGTGCTCCTTTCCCTGGAATACCTTCACATGCTTGGCATTGTCTATCGTGATCTCAAGCCAGAAAATGTGCTTGTCAGAGAAGATGGACATATAATGCTCTCTGATTTTGACCTCTCCCTTCGCTGTGCTGTCAGTCCAACACTAGTCAAGTCATCATCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E260992" ref_strand="+" ref_description="SGN-E260992 [cLEG-55-E7]">
      <seq>tgacgtaagtgaggagagtacttctagcagcttgagcagcagcgttaacaaaccccacaaagctaatgactcaagatgggaagccattcaagctatccggactaaagatggggcattggatttgaggcacttccggttgctgaagaagttgggaagtggtgatattggaagtgtgtatctgtctgagttgtgtggaacaaagtgttattttgccatgaaagttatggataaggcgtcgttagctagtcgtaagaaattgcttcgtgcacagacagaaagagagattttgcagtccctggaccatccatttctcccaacattatatagccattttgaaacagaaaagttctcatgtctagtgatggagttctgcccaggaggagacctgcacacactcagacaaagacaaccagggaagcatttttcagaacaagcggtgaaattctacgtagcagaagtgctcctttccctggaataccttcacatgcttggcattgtctatcgtgatctcaagccagaaaatgtgcttgtcagagaagatggacatataatgctctctgattttgacctctcccttcgctgtgctgtcagtccaacactagtcaagtcatcatctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="85804" stop="82532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85504" g_stop="85064" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85063" i_stop="83010" i_length="2054">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83009" g_stop="82832" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="619" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E260992" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85504" e_stop="85064"/>
          <exon e_start="83009" e_stop="82832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGTAAGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTTAACAAACCCCACAAAGCTAATGACTCAAGATGGGAAGCCATTCAAGCTATCCGGACTAAAGATGGGGCATTGGATTTGAGGCACTTCCGGTTGCTGAAGAAGTTGGGAAGTGGTGATATTGGAAGTGTGTATCTGTCTGAGTTGTGTGGAACAAAGTGTTATTTTGCCATGAAAGTTATGGATAAGGCGTCGTTAGCTAGTCGTAAGAAATTGCTTCGTGCACAGACAGAAAGAGAGATTTTGCAGTCCCTGGACCATCCATTTCTCCCAACATTATATAGCCATTTTGAAACAGAAAAGTTCTCATGTCTAGTGATGGAGTTCTGCCCAGGAGGAGACCTGCACACACTCAGACAAAGACAACCAGGGAAGCATTTTTCAGAACAAGCGGTGAAGTATGATACTTGATCTCTGACCTTACTGTCTTAAGATAGCTTGCTCTTCTTTCTTTTAAAAAAGTTGGCATATTTTGTTGCTTTCAGTCTGGAGTATTATTTTCACAATTTACAGCATTGACTGTATCTTTAACTGTTAGATCTAGATATGTTTTTGTTGTGGCTGTAGACATAATTAATCCAACATTATCCATTATTTCTTAATTTAAATTAATTGATCTAACAGATATACTTATAACAATCAAGAGATATAAATGCCTTTACATGACATGATTTTCTTGGTGGTACCAATAAATTAAATTGAAGCAAACTGACTTGATATGCAAGTTCTTTCAAGTCCCTAAAGCAGTCGGATTGCATGTACTAACCAGTTATATCATTTACCTCTGGACAATGAAATGCATGTTGACCCCACTGTTAGTTCAAAAACCTTGTTATTTGATATTCTGACTTTATTATTTGCGCAGTAGTTTAGATTCTAAATCTTAACTACTTTTGGGATCATTTGCCTAGTTTTTTTCTTCCATAGGTGGTTTCATTTGCTTGTGTTTTTCTTACTAAGCCAAGTGGATGTTTAAACTGGTTTATATTCTTCTTCTGTGTTGGATCTATACGAAGTTGTTTTGGGTCTCTGTTGCCTACTGCATGTTCTTCTTGTCAATTATTTCCAATTCGATAGCTGCAAGTTAGTGTGACCACTACTTTAATTGGACATGATAAATGCTGTTTATTTTACTTTTAAGGTTTGGTGCCTGCAGGGTCATAACATATTTTTTGTAGTCATTAAGATACTGTTTGTTGTGTGGTCCTGTAGTTGGGGTAATCAGCTAATGTGCAGGCTGGTGTTTTTCTCTTTTTGGCAAATGAATCCTTCAGTTTAGTAGTCATCCACCTAATTTTAAATATTAAGAAACATTATTGATTTGTTGGTTGGTGTTGGATTATTGAGAGACTGATTAATTCTCACTTTGACTCATTCCTGTGACCTCCTTTCATTTTGTCATTTGCTTTAAAACATTGACCTCTTTAGTGTAATGGGGAACTTTTATTTGGTGAAGTTAATAGTTGTAACAGAAATATTTACTTTGTCAAAAATATTAGATTCAATTGTATGTGACATCTTAAAATTTTCCTGGCTGTTCTGCTATTAATTTGATATCTCTAGCAAACTCTTATTATAACCCATCCAACTGTATTTTCAATGTCTGCATAACTCAAATTCGACTAGTTTATACAAGACGGAGGAAGCATCTAAATAACCAGATCTAGGGCAAGTGTTGTGTTCCCCTTCCCTAGAATAAATGGGGAAAATGTTGAAACCCAAATAAGGGATGATACTTTGGACCAGTGAAAAGGTTGTCACCGTCGGACTAAACCATTACCATTCAGTAATACTCTTTTTTTTGGGTGGTGGTGGTGGTGGTGGGTGGGAGACACCTTTCTGGCAACGTCTTTGTTTGATGATTCTTGCCCGTCTCCCTAGTCACTGGAATCATGAAAGCTGTAACCAGCTCTTCAATTTTGTTGGCAGTTCTCTCTTCCTTGCAATTAAAATCTTCCCACCTTGCACCCAAGGGTGTGGCCTAGTGGTCAATAAAGTGGGTTGAGAACCATGTGGTCTCTGGTTCAAAACCAATTGGAAGCAAAAAAACTAGCAGGTTTGTTCTCATCTGTTCAAGCCTTGATAGACAGTTTATCTGTTGGCTGTGCTAGTGGGAGGGGTCTAAAAAATTGCATACCATGCATATGAAGAAAGTTTTAAATTAGTGTATTCATACTTGTTTCTTGACATGATTTGAATGGGATGTTGCATTATTTCGGAATATATGAAGTATCATAAATATTTGTGTATTTTTCTTTGGAGTTGAATAGTAGATATAAGCCTTCGGTTGCTTGTGCTAAAACTCCAATGAAGAAAGCAGGAAGAAATTATCAGGATTTTCATTTCTGCTATCTGCCTTTACTCAATTCCAAACTCATGAACGAAAAGTATACTATGTTGGTGGCTGCAGTTTATTGATTTGCTTGTGTTGTATTGTATCTTAAAATTGCAGATTCTACGTAGCAGAAGTGCTCCTTTCCCTGGAATACCTTCACATGCTTGGCATTGTCTATCGTGATCTCAAGCCAGAAAATGTGCTTGTCAGAGAAGATGGACATATAATGCTCTCTGATTTTGACCTCTCCCTTCGCTGTGCTGTCAGTCCAACACTAGTCAAGTCATCATCTCTT</genome_strand>
        <mrna_strand>TGACGTAAGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTTAACAAACCCCACAAAGCTAATGACTCAAGATGGGAAGCCATTCAAGCTATCCGGACTAAAGATGGGGCATTGGATTTGAGGCACTTCCGGTTGCTGAAGAAGTTGGGAAGTGGTGATATTGGAAGTGTGTATCTGTCTGAGTTGTGTGGAACAAAGTGTTATTTTGCCATGAAAGTTATGGATAAGGCGTCGTTAGCTAGTCGTAAGAAATTGCTTCGTGCACAGACAGAAAGAGAGATTTTGCAGTCCCTGGACCATCCATTTCTCCCAACATTATATAGCCATTTTGAAACAGAAAAGTTCTCATGTCTAGTGATGGAGTTCTGCCCAGGAGGAGACCTGCACACACTCAGACAAAGACAACCAGGGAAGCATTTTTCAGAACAAGCGGTGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTACGTAGCAGAAGTGCTCCTTTCCCTGGAATACCTTCACATGCTTGGCATTGTCTATCGTGATCTCAAGCCAGAAAATGTGCTTGTCAGAGAAGATGGACATATAATGCTCTCTGATTTTGACCTCTCCCTTCGCTGTGCTGTCAGTCCAACACTAGTCAAGTCATCATCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E259873" ref_strand="+" ref_description="SGN-E259873 [cLEG-51-H20]">
      <seq>tgacgtaagtgaggagagtacttctagcagcttgagcagcagcgttaacaaaccccacaaagctaatgactcaagatgggaagccattcaagctatccggactaaagatggggcattggatttgaggcacttccggttgctgaagaagttgggaagtggtgatattggaagtgtgtatctgtctgagttgtgtggaacaaagtgttattttgccatgaaagttatggataaggcgtcgttagctagtcgtaagaaattgcttcgtgcacagacagaaagagagattttgcagtccctggaccatccatttctcccaacattatatagccattttgaaacagaaaagttctcatgtctagtgatggagttctgcccaggaggagacctgcacacactcagacaaagacaaccagggaagcatttttcagaacaagcggtgaaattctacgtagcagaagtgctcctttccctggaataccttcacatgcttggcattgtctatcgtgatctcaagccagaaaatgtgcttgtcagagaagatggacatataatgctctctgattttgacctctcccttcgctgtgctgtcagtccaacactagtcaagtcatcatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="85804" stop="82534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85504" g_stop="85064" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85063" i_stop="83010" i_length="2054">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83009" g_stop="82834" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="617" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E259873" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85504" e_stop="85064"/>
          <exon e_start="83009" e_stop="82834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGTAAGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTTAACAAACCCCACAAAGCTAATGACTCAAGATGGGAAGCCATTCAAGCTATCCGGACTAAAGATGGGGCATTGGATTTGAGGCACTTCCGGTTGCTGAAGAAGTTGGGAAGTGGTGATATTGGAAGTGTGTATCTGTCTGAGTTGTGTGGAACAAAGTGTTATTTTGCCATGAAAGTTATGGATAAGGCGTCGTTAGCTAGTCGTAAGAAATTGCTTCGTGCACAGACAGAAAGAGAGATTTTGCAGTCCCTGGACCATCCATTTCTCCCAACATTATATAGCCATTTTGAAACAGAAAAGTTCTCATGTCTAGTGATGGAGTTCTGCCCAGGAGGAGACCTGCACACACTCAGACAAAGACAACCAGGGAAGCATTTTTCAGAACAAGCGGTGAAGTATGATACTTGATCTCTGACCTTACTGTCTTAAGATAGCTTGCTCTTCTTTCTTTTAAAAAAGTTGGCATATTTTGTTGCTTTCAGTCTGGAGTATTATTTTCACAATTTACAGCATTGACTGTATCTTTAACTGTTAGATCTAGATATGTTTTTGTTGTGGCTGTAGACATAATTAATCCAACATTATCCATTATTTCTTAATTTAAATTAATTGATCTAACAGATATACTTATAACAATCAAGAGATATAAATGCCTTTACATGACATGATTTTCTTGGTGGTACCAATAAATTAAATTGAAGCAAACTGACTTGATATGCAAGTTCTTTCAAGTCCCTAAAGCAGTCGGATTGCATGTACTAACCAGTTATATCATTTACCTCTGGACAATGAAATGCATGTTGACCCCACTGTTAGTTCAAAAACCTTGTTATTTGATATTCTGACTTTATTATTTGCGCAGTAGTTTAGATTCTAAATCTTAACTACTTTTGGGATCATTTGCCTAGTTTTTTTCTTCCATAGGTGGTTTCATTTGCTTGTGTTTTTCTTACTAAGCCAAGTGGATGTTTAAACTGGTTTATATTCTTCTTCTGTGTTGGATCTATACGAAGTTGTTTTGGGTCTCTGTTGCCTACTGCATGTTCTTCTTGTCAATTATTTCCAATTCGATAGCTGCAAGTTAGTGTGACCACTACTTTAATTGGACATGATAAATGCTGTTTATTTTACTTTTAAGGTTTGGTGCCTGCAGGGTCATAACATATTTTTTGTAGTCATTAAGATACTGTTTGTTGTGTGGTCCTGTAGTTGGGGTAATCAGCTAATGTGCAGGCTGGTGTTTTTCTCTTTTTGGCAAATGAATCCTTCAGTTTAGTAGTCATCCACCTAATTTTAAATATTAAGAAACATTATTGATTTGTTGGTTGGTGTTGGATTATTGAGAGACTGATTAATTCTCACTTTGACTCATTCCTGTGACCTCCTTTCATTTTGTCATTTGCTTTAAAACATTGACCTCTTTAGTGTAATGGGGAACTTTTATTTGGTGAAGTTAATAGTTGTAACAGAAATATTTACTTTGTCAAAAATATTAGATTCAATTGTATGTGACATCTTAAAATTTTCCTGGCTGTTCTGCTATTAATTTGATATCTCTAGCAAACTCTTATTATAACCCATCCAACTGTATTTTCAATGTCTGCATAACTCAAATTCGACTAGTTTATACAAGACGGAGGAAGCATCTAAATAACCAGATCTAGGGCAAGTGTTGTGTTCCCCTTCCCTAGAATAAATGGGGAAAATGTTGAAACCCAAATAAGGGATGATACTTTGGACCAGTGAAAAGGTTGTCACCGTCGGACTAAACCATTACCATTCAGTAATACTCTTTTTTTTGGGTGGTGGTGGTGGTGGTGGGTGGGAGACACCTTTCTGGCAACGTCTTTGTTTGATGATTCTTGCCCGTCTCCCTAGTCACTGGAATCATGAAAGCTGTAACCAGCTCTTCAATTTTGTTGGCAGTTCTCTCTTCCTTGCAATTAAAATCTTCCCACCTTGCACCCAAGGGTGTGGCCTAGTGGTCAATAAAGTGGGTTGAGAACCATGTGGTCTCTGGTTCAAAACCAATTGGAAGCAAAAAAACTAGCAGGTTTGTTCTCATCTGTTCAAGCCTTGATAGACAGTTTATCTGTTGGCTGTGCTAGTGGGAGGGGTCTAAAAAATTGCATACCATGCATATGAAGAAAGTTTTAAATTAGTGTATTCATACTTGTTTCTTGACATGATTTGAATGGGATGTTGCATTATTTCGGAATATATGAAGTATCATAAATATTTGTGTATTTTTCTTTGGAGTTGAATAGTAGATATAAGCCTTCGGTTGCTTGTGCTAAAACTCCAATGAAGAAAGCAGGAAGAAATTATCAGGATTTTCATTTCTGCTATCTGCCTTTACTCAATTCCAAACTCATGAACGAAAAGTATACTATGTTGGTGGCTGCAGTTTATTGATTTGCTTGTGTTGTATTGTATCTTAAAATTGCAGATTCTACGTAGCAGAAGTGCTCCTTTCCCTGGAATACCTTCACATGCTTGGCATTGTCTATCGTGATCTCAAGCCAGAAAATGTGCTTGTCAGAGAAGATGGACATATAATGCTCTCTGATTTTGACCTCTCCCTTCGCTGTGCTGTCAGTCCAACACTAGTCAAGTCATCATCTC</genome_strand>
        <mrna_strand>TGACGTAAGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTTAACAAACCCCACAAAGCTAATGACTCAAGATGGGAAGCCATTCAAGCTATCCGGACTAAAGATGGGGCATTGGATTTGAGGCACTTCCGGTTGCTGAAGAAGTTGGGAAGTGGTGATATTGGAAGTGTGTATCTGTCTGAGTTGTGTGGAACAAAGTGTTATTTTGCCATGAAAGTTATGGATAAGGCGTCGTTAGCTAGTCGTAAGAAATTGCTTCGTGCACAGACAGAAAGAGAGATTTTGCAGTCCCTGGACCATCCATTTCTCCCAACATTATATAGCCATTTTGAAACAGAAAAGTTCTCATGTCTAGTGATGGAGTTCTGCCCAGGAGGAGACCTGCACACACTCAGACAAAGACAACCAGGGAAGCATTTTTCAGAACAAGCGGTGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTACGTAGCAGAAGTGCTCCTTTCCCTGGAATACCTTCACATGCTTGGCATTGTCTATCGTGATCTCAAGCCAGAAAATGTGCTTGTCAGAGAAGATGGACATATAATGCTCTCTGATTTTGACCTCTCCCTTCGCTGTGCTGTCAGTCCAACACTAGTCAAGTCATCATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E252212" ref_strand="+" ref_description="SGN-E252212 [cLEG-8-N18]">
      <seq>tgacgtaagtgaggagagtacttctagcagcttgagcagcagcgttaacaaaccccacaaagctaatgactcaagatgggaagccattcaagctatccggactaaagatggggcattggatttgaggcacttccggttgctgaagaagttgggaagtggtgatattggaagtgtgtatctgtctgagttgtgtggaacaaagtgttattttgccatgaaagttatggataaggcgtcgttagctagtcgtaagaaattgcttcgtgcacagacagaaagagagattttgcagtccctggaccatccatttctcccaacattatatagccattttgaaacagaaaagttctcatgtctagtgatggagttctgcccaggaggagacctgcacacactcagacaaagacaaccagggaagcatttttcagaacaagcggtgaaattctacgtagcagaagtgctcctttccctggaataccttcacatgcttggcattgtctatcgtgatctcaagccagaaaatgtgcttgtcagagaagatggacatataatgctctctgattttgacctctcccttcgctgtgctgtcagtccaacactagtcaagtcatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="85804" stop="82536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85504" g_stop="85064" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85063" i_stop="83010" i_length="2054">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83009" g_stop="82836" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="615" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E252212" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85504" e_stop="85064"/>
          <exon e_start="83009" e_stop="82836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGTAAGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTTAACAAACCCCACAAAGCTAATGACTCAAGATGGGAAGCCATTCAAGCTATCCGGACTAAAGATGGGGCATTGGATTTGAGGCACTTCCGGTTGCTGAAGAAGTTGGGAAGTGGTGATATTGGAAGTGTGTATCTGTCTGAGTTGTGTGGAACAAAGTGTTATTTTGCCATGAAAGTTATGGATAAGGCGTCGTTAGCTAGTCGTAAGAAATTGCTTCGTGCACAGACAGAAAGAGAGATTTTGCAGTCCCTGGACCATCCATTTCTCCCAACATTATATAGCCATTTTGAAACAGAAAAGTTCTCATGTCTAGTGATGGAGTTCTGCCCAGGAGGAGACCTGCACACACTCAGACAAAGACAACCAGGGAAGCATTTTTCAGAACAAGCGGTGAAGTATGATACTTGATCTCTGACCTTACTGTCTTAAGATAGCTTGCTCTTCTTTCTTTTAAAAAAGTTGGCATATTTTGTTGCTTTCAGTCTGGAGTATTATTTTCACAATTTACAGCATTGACTGTATCTTTAACTGTTAGATCTAGATATGTTTTTGTTGTGGCTGTAGACATAATTAATCCAACATTATCCATTATTTCTTAATTTAAATTAATTGATCTAACAGATATACTTATAACAATCAAGAGATATAAATGCCTTTACATGACATGATTTTCTTGGTGGTACCAATAAATTAAATTGAAGCAAACTGACTTGATATGCAAGTTCTTTCAAGTCCCTAAAGCAGTCGGATTGCATGTACTAACCAGTTATATCATTTACCTCTGGACAATGAAATGCATGTTGACCCCACTGTTAGTTCAAAAACCTTGTTATTTGATATTCTGACTTTATTATTTGCGCAGTAGTTTAGATTCTAAATCTTAACTACTTTTGGGATCATTTGCCTAGTTTTTTTCTTCCATAGGTGGTTTCATTTGCTTGTGTTTTTCTTACTAAGCCAAGTGGATGTTTAAACTGGTTTATATTCTTCTTCTGTGTTGGATCTATACGAAGTTGTTTTGGGTCTCTGTTGCCTACTGCATGTTCTTCTTGTCAATTATTTCCAATTCGATAGCTGCAAGTTAGTGTGACCACTACTTTAATTGGACATGATAAATGCTGTTTATTTTACTTTTAAGGTTTGGTGCCTGCAGGGTCATAACATATTTTTTGTAGTCATTAAGATACTGTTTGTTGTGTGGTCCTGTAGTTGGGGTAATCAGCTAATGTGCAGGCTGGTGTTTTTCTCTTTTTGGCAAATGAATCCTTCAGTTTAGTAGTCATCCACCTAATTTTAAATATTAAGAAACATTATTGATTTGTTGGTTGGTGTTGGATTATTGAGAGACTGATTAATTCTCACTTTGACTCATTCCTGTGACCTCCTTTCATTTTGTCATTTGCTTTAAAACATTGACCTCTTTAGTGTAATGGGGAACTTTTATTTGGTGAAGTTAATAGTTGTAACAGAAATATTTACTTTGTCAAAAATATTAGATTCAATTGTATGTGACATCTTAAAATTTTCCTGGCTGTTCTGCTATTAATTTGATATCTCTAGCAAACTCTTATTATAACCCATCCAACTGTATTTTCAATGTCTGCATAACTCAAATTCGACTAGTTTATACAAGACGGAGGAAGCATCTAAATAACCAGATCTAGGGCAAGTGTTGTGTTCCCCTTCCCTAGAATAAATGGGGAAAATGTTGAAACCCAAATAAGGGATGATACTTTGGACCAGTGAAAAGGTTGTCACCGTCGGACTAAACCATTACCATTCAGTAATACTCTTTTTTTTGGGTGGTGGTGGTGGTGGTGGGTGGGAGACACCTTTCTGGCAACGTCTTTGTTTGATGATTCTTGCCCGTCTCCCTAGTCACTGGAATCATGAAAGCTGTAACCAGCTCTTCAATTTTGTTGGCAGTTCTCTCTTCCTTGCAATTAAAATCTTCCCACCTTGCACCCAAGGGTGTGGCCTAGTGGTCAATAAAGTGGGTTGAGAACCATGTGGTCTCTGGTTCAAAACCAATTGGAAGCAAAAAAACTAGCAGGTTTGTTCTCATCTGTTCAAGCCTTGATAGACAGTTTATCTGTTGGCTGTGCTAGTGGGAGGGGTCTAAAAAATTGCATACCATGCATATGAAGAAAGTTTTAAATTAGTGTATTCATACTTGTTTCTTGACATGATTTGAATGGGATGTTGCATTATTTCGGAATATATGAAGTATCATAAATATTTGTGTATTTTTCTTTGGAGTTGAATAGTAGATATAAGCCTTCGGTTGCTTGTGCTAAAACTCCAATGAAGAAAGCAGGAAGAAATTATCAGGATTTTCATTTCTGCTATCTGCCTTTACTCAATTCCAAACTCATGAACGAAAAGTATACTATGTTGGTGGCTGCAGTTTATTGATTTGCTTGTGTTGTATTGTATCTTAAAATTGCAGATTCTACGTAGCAGAAGTGCTCCTTTCCCTGGAATACCTTCACATGCTTGGCATTGTCTATCGTGATCTCAAGCCAGAAAATGTGCTTGTCAGAGAAGATGGACATATAATGCTCTCTGATTTTGACCTCTCCCTTCGCTGTGCTGTCAGTCCAACACTAGTCAAGTCATCATC</genome_strand>
        <mrna_strand>TGACGTAAGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTTAACAAACCCCACAAAGCTAATGACTCAAGATGGGAAGCCATTCAAGCTATCCGGACTAAAGATGGGGCATTGGATTTGAGGCACTTCCGGTTGCTGAAGAAGTTGGGAAGTGGTGATATTGGAAGTGTGTATCTGTCTGAGTTGTGTGGAACAAAGTGTTATTTTGCCATGAAAGTTATGGATAAGGCGTCGTTAGCTAGTCGTAAGAAATTGCTTCGTGCACAGACAGAAAGAGAGATTTTGCAGTCCCTGGACCATCCATTTCTCCCAACATTATATAGCCATTTTGAAACAGAAAAGTTCTCATGTCTAGTGATGGAGTTCTGCCCAGGAGGAGACCTGCACACACTCAGACAAAGACAACCAGGGAAGCATTTTTCAGAACAAGCGGTGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTACGTAGCAGAAGTGCTCCTTTCCCTGGAATACCTTCACATGCTTGGCATTGTCTATCGTGATCTCAAGCCAGAAAATGTGCTTGTCAGAGAAGATGGACATATAATGCTCTCTGATTTTGACCTCTCCCTTCGCTGTGCTGTCAGTCCAACACTAGTCAAGTCATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E257930" ref_strand="+" ref_description="SGN-E257930 [cLEG-48-I21]">
      <seq>tgacgtaagtgaggagagtacttctagcagcttgagcagcagcgttaacaaaccccacaaagctaatgactcaagatgggaagccattcaagctatccggactaaagatggggcattggatttgaggcacttccggttgctgaagaagttgggaagtggtgatattggaagtgtgtatctgtctgagttgtgtggaacaaagtgttattttgccatgaaagttatggataaggcgtcgttagctagtcgtaagaaattgcttcgtgcacagacagaaagagagattttgcagtccctggaccatccatttctcccaacattatatagccattttgaaacagaaaagttctcatgtctagtgatggagttctgcccaggaggagacctgcacacactcagacaaagacaaccagggaagcatttttcagaacaagcggtgaaattctacgtagcagaagtgctcctttccctggaataccttcacatgcttggcattgtctatcgtgatctcaagccagaaaatgtgcttgtcagagaagatggacatataatgctctctgattttgacctctccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="85804" stop="82576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85504" g_stop="85064" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85063" i_stop="83010" i_length="2054">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83009" g_stop="82876" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="575" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E257930" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85504" e_stop="85064"/>
          <exon e_start="83009" e_stop="82876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGTAAGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTTAACAAACCCCACAAAGCTAATGACTCAAGATGGGAAGCCATTCAAGCTATCCGGACTAAAGATGGGGCATTGGATTTGAGGCACTTCCGGTTGCTGAAGAAGTTGGGAAGTGGTGATATTGGAAGTGTGTATCTGTCTGAGTTGTGTGGAACAAAGTGTTATTTTGCCATGAAAGTTATGGATAAGGCGTCGTTAGCTAGTCGTAAGAAATTGCTTCGTGCACAGACAGAAAGAGAGATTTTGCAGTCCCTGGACCATCCATTTCTCCCAACATTATATAGCCATTTTGAAACAGAAAAGTTCTCATGTCTAGTGATGGAGTTCTGCCCAGGAGGAGACCTGCACACACTCAGACAAAGACAACCAGGGAAGCATTTTTCAGAACAAGCGGTGAAGTATGATACTTGATCTCTGACCTTACTGTCTTAAGATAGCTTGCTCTTCTTTCTTTTAAAAAAGTTGGCATATTTTGTTGCTTTCAGTCTGGAGTATTATTTTCACAATTTACAGCATTGACTGTATCTTTAACTGTTAGATCTAGATATGTTTTTGTTGTGGCTGTAGACATAATTAATCCAACATTATCCATTATTTCTTAATTTAAATTAATTGATCTAACAGATATACTTATAACAATCAAGAGATATAAATGCCTTTACATGACATGATTTTCTTGGTGGTACCAATAAATTAAATTGAAGCAAACTGACTTGATATGCAAGTTCTTTCAAGTCCCTAAAGCAGTCGGATTGCATGTACTAACCAGTTATATCATTTACCTCTGGACAATGAAATGCATGTTGACCCCACTGTTAGTTCAAAAACCTTGTTATTTGATATTCTGACTTTATTATTTGCGCAGTAGTTTAGATTCTAAATCTTAACTACTTTTGGGATCATTTGCCTAGTTTTTTTCTTCCATAGGTGGTTTCATTTGCTTGTGTTTTTCTTACTAAGCCAAGTGGATGTTTAAACTGGTTTATATTCTTCTTCTGTGTTGGATCTATACGAAGTTGTTTTGGGTCTCTGTTGCCTACTGCATGTTCTTCTTGTCAATTATTTCCAATTCGATAGCTGCAAGTTAGTGTGACCACTACTTTAATTGGACATGATAAATGCTGTTTATTTTACTTTTAAGGTTTGGTGCCTGCAGGGTCATAACATATTTTTTGTAGTCATTAAGATACTGTTTGTTGTGTGGTCCTGTAGTTGGGGTAATCAGCTAATGTGCAGGCTGGTGTTTTTCTCTTTTTGGCAAATGAATCCTTCAGTTTAGTAGTCATCCACCTAATTTTAAATATTAAGAAACATTATTGATTTGTTGGTTGGTGTTGGATTATTGAGAGACTGATTAATTCTCACTTTGACTCATTCCTGTGACCTCCTTTCATTTTGTCATTTGCTTTAAAACATTGACCTCTTTAGTGTAATGGGGAACTTTTATTTGGTGAAGTTAATAGTTGTAACAGAAATATTTACTTTGTCAAAAATATTAGATTCAATTGTATGTGACATCTTAAAATTTTCCTGGCTGTTCTGCTATTAATTTGATATCTCTAGCAAACTCTTATTATAACCCATCCAACTGTATTTTCAATGTCTGCATAACTCAAATTCGACTAGTTTATACAAGACGGAGGAAGCATCTAAATAACCAGATCTAGGGCAAGTGTTGTGTTCCCCTTCCCTAGAATAAATGGGGAAAATGTTGAAACCCAAATAAGGGATGATACTTTGGACCAGTGAAAAGGTTGTCACCGTCGGACTAAACCATTACCATTCAGTAATACTCTTTTTTTTGGGTGGTGGTGGTGGTGGTGGGTGGGAGACACCTTTCTGGCAACGTCTTTGTTTGATGATTCTTGCCCGTCTCCCTAGTCACTGGAATCATGAAAGCTGTAACCAGCTCTTCAATTTTGTTGGCAGTTCTCTCTTCCTTGCAATTAAAATCTTCCCACCTTGCACCCAAGGGTGTGGCCTAGTGGTCAATAAAGTGGGTTGAGAACCATGTGGTCTCTGGTTCAAAACCAATTGGAAGCAAAAAAACTAGCAGGTTTGTTCTCATCTGTTCAAGCCTTGATAGACAGTTTATCTGTTGGCTGTGCTAGTGGGAGGGGTCTAAAAAATTGCATACCATGCATATGAAGAAAGTTTTAAATTAGTGTATTCATACTTGTTTCTTGACATGATTTGAATGGGATGTTGCATTATTTCGGAATATATGAAGTATCATAAATATTTGTGTATTTTTCTTTGGAGTTGAATAGTAGATATAAGCCTTCGGTTGCTTGTGCTAAAACTCCAATGAAGAAAGCAGGAAGAAATTATCAGGATTTTCATTTCTGCTATCTGCCTTTACTCAATTCCAAACTCATGAACGAAAAGTATACTATGTTGGTGGCTGCAGTTTATTGATTTGCTTGTGTTGTATTGTATCTTAAAATTGCAGATTCTACGTAGCAGAAGTGCTCCTTTCCCTGGAATACCTTCACATGCTTGGCATTGTCTATCGTGATCTCAAGCCAGAAAATGTGCTTGTCAGAGAAGATGGACATATAATGCTCTCTGATTTTGACCTCTCCC</genome_strand>
        <mrna_strand>TGACGTAAGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTTAACAAACCCCACAAAGCTAATGACTCAAGATGGGAAGCCATTCAAGCTATCCGGACTAAAGATGGGGCATTGGATTTGAGGCACTTCCGGTTGCTGAAGAAGTTGGGAAGTGGTGATATTGGAAGTGTGTATCTGTCTGAGTTGTGTGGAACAAAGTGTTATTTTGCCATGAAAGTTATGGATAAGGCGTCGTTAGCTAGTCGTAAGAAATTGCTTCGTGCACAGACAGAAAGAGAGATTTTGCAGTCCCTGGACCATCCATTTCTCCCAACATTATATAGCCATTTTGAAACAGAAAAGTTCTCATGTCTAGTGATGGAGTTCTGCCCAGGAGGAGACCTGCACACACTCAGACAAAGACAACCAGGGAAGCATTTTTCAGAACAAGCGGTGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTACGTAGCAGAAGTGCTCCTTTCCCTGGAATACCTTCACATGCTTGGCATTGTCTATCGTGATCTCAAGCCAGAAAATGTGCTTGTCAGAGAAGATGGACATATAATGCTCTCTGATTTTGACCTCTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E257343" ref_strand="+" ref_description="SGN-E257343 [cLEG-45-C15]">
      <seq>aggctcacaagggacagctgatcaggaaagaaagaattctactaaggacagctcagcatcagccaaagttagtgatggggctagcagtattgcaaaaacaagtggaagtgccaaaattagtgatcgagcagattttcttgagagtggtaagagcagcatctgtagggggagcacaggaactgacgtaagtgaggagagtacttctagcagcttgagcagcagcgttaacaaaccccacaaagctaatgactcaagatgggaagccattcaagctatccggactaaagatggggcattggatttgaggcacttccggttgctgaagaagttgggaagtggtgatattggaagtgtgtatctgtctgagttgtgtggaacaaagtgttattttgccatgaaagttatggataaggcgtcgttagctagtcgtaagaaattgcttcgtgcacagacagaaagagagattttgcagtccctggaccatccatttctcccaacattatatagccattttgaaacagaaaagttctcatgtctagtgatggagttctgcccaggaggagacctgcacacactcagacaaagacaaccagggaagcatttttcagaacaagcggtgaaattctacgtagcagaagtgctcctttccctggaataccttcacatgcttggcattgtctatcgtgatctcagccagaaaatgtgcttgtcagagaagaggacatataatgctctctgattttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="85984" stop="82583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85684" g_stop="85064" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85063" i_stop="83010" i_length="2054">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83009" g_stop="82883" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="746" r_length="125" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E257343" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85684" e_stop="85064"/>
          <exon e_start="83009" e_stop="82883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTCACAAGGGACAGCTGATCAGGAAAGAAAGAATTCTACTAAGGACAGCTCAGCATCAGCCAAAGTTAGTGATGGGGCTAGCAGTATTGCAAAAACAAGTGGAAGTGCCAAAATTAGTGATCGAGCAGATTTTCTTGAGAGTGGTAAGAGCAGCATCTGTAGGGGGAGCACAGGAACTGACGTAAGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTTAACAAACCCCACAAAGCTAATGACTCAAGATGGGAAGCCATTCAAGCTATCCGGACTAAAGATGGGGCATTGGATTTGAGGCACTTCCGGTTGCTGAAGAAGTTGGGAAGTGGTGATATTGGAAGTGTGTATCTGTCTGAGTTGTGTGGAACAAAGTGTTATTTTGCCATGAAAGTTATGGATAAGGCGTCGTTAGCTAGTCGTAAGAAATTGCTTCGTGCACAGACAGAAAGAGAGATTTTGCAGTCCCTGGACCATCCATTTCTCCCAACATTATATAGCCATTTTGAAACAGAAAAGTTCTCATGTCTAGTGATGGAGTTCTGCCCAGGAGGAGACCTGCACACACTCAGACAAAGACAACCAGGGAAGCATTTTTCAGAACAAGCGGTGAAGTATGATACTTGATCTCTGACCTTACTGTCTTAAGATAGCTTGCTCTTCTTTCTTTTAAAAAAGTTGGCATATTTTGTTGCTTTCAGTCTGGAGTATTATTTTCACAATTTACAGCATTGACTGTATCTTTAACTGTTAGATCTAGATATGTTTTTGTTGTGGCTGTAGACATAATTAATCCAACATTATCCATTATTTCTTAATTTAAATTAATTGATCTAACAGATATACTTATAACAATCAAGAGATATAAATGCCTTTACATGACATGATTTTCTTGGTGGTACCAATAAATTAAATTGAAGCAAACTGACTTGATATGCAAGTTCTTTCAAGTCCCTAAAGCAGTCGGATTGCATGTACTAACCAGTTATATCATTTACCTCTGGACAATGAAATGCATGTTGACCCCACTGTTAGTTCAAAAACCTTGTTATTTGATATTCTGACTTTATTATTTGCGCAGTAGTTTAGATTCTAAATCTTAACTACTTTTGGGATCATTTGCCTAGTTTTTTTCTTCCATAGGTGGTTTCATTTGCTTGTGTTTTTCTTACTAAGCCAAGTGGATGTTTAAACTGGTTTATATTCTTCTTCTGTGTTGGATCTATACGAAGTTGTTTTGGGTCTCTGTTGCCTACTGCATGTTCTTCTTGTCAATTATTTCCAATTCGATAGCTGCAAGTTAGTGTGACCACTACTTTAATTGGACATGATAAATGCTGTTTATTTTACTTTTAAGGTTTGGTGCCTGCAGGGTCATAACATATTTTTTGTAGTCATTAAGATACTGTTTGTTGTGTGGTCCTGTAGTTGGGGTAATCAGCTAATGTGCAGGCTGGTGTTTTTCTCTTTTTGGCAAATGAATCCTTCAGTTTAGTAGTCATCCACCTAATTTTAAATATTAAGAAACATTATTGATTTGTTGGTTGGTGTTGGATTATTGAGAGACTGATTAATTCTCACTTTGACTCATTCCTGTGACCTCCTTTCATTTTGTCATTTGCTTTAAAACATTGACCTCTTTAGTGTAATGGGGAACTTTTATTTGGTGAAGTTAATAGTTGTAACAGAAATATTTACTTTGTCAAAAATATTAGATTCAATTGTATGTGACATCTTAAAATTTTCCTGGCTGTTCTGCTATTAATTTGATATCTCTAGCAAACTCTTATTATAACCCATCCAACTGTATTTTCAATGTCTGCATAACTCAAATTCGACTAGTTTATACAAGACGGAGGAAGCATCTAAATAACCAGATCTAGGGCAAGTGTTGTGTTCCCCTTCCCTAGAATAAATGGGGAAAATGTTGAAACCCAAATAAGGGATGATACTTTGGACCAGTGAAAAGGTTGTCACCGTCGGACTAAACCATTACCATTCAGTAATACTCTTTTTTTTGGGTGGTGGTGGTGGTGGTGGGTGGGAGACACCTTTCTGGCAACGTCTTTGTTTGATGATTCTTGCCCGTCTCCCTAGTCACTGGAATCATGAAAGCTGTAACCAGCTCTTCAATTTTGTTGGCAGTTCTCTCTTCCTTGCAATTAAAATCTTCCCACCTTGCACCCAAGGGTGTGGCCTAGTGGTCAATAAAGTGGGTTGAGAACCATGTGGTCTCTGGTTCAAAACCAATTGGAAGCAAAAAAACTAGCAGGTTTGTTCTCATCTGTTCAAGCCTTGATAGACAGTTTATCTGTTGGCTGTGCTAGTGGGAGGGGTCTAAAAAATTGCATACCATGCATATGAAGAAAGTTTTAAATTAGTGTATTCATACTTGTTTCTTGACATGATTTGAATGGGATGTTGCATTATTTCGGAATATATGAAGTATCATAAATATTTGTGTATTTTTCTTTGGAGTTGAATAGTAGATATAAGCCTTCGGTTGCTTGTGCTAAAACTCCAATGAAGAAAGCAGGAAGAAATTATCAGGATTTTCATTTCTGCTATCTGCCTTTACTCAATTCCAAACTCATGAACGAAAAGTATACTATGTTGGTGGCTGCAGTTTATTGATTTGCTTGTGTTGTATTGTATCTTAAAATTGCAGATTCTACGTAGCAGAAGTGCTCCTTTCCCTGGAATACCTTCACATGCTTGGCATTGTCTATCGTGATCTCAAGCCAGAAAATGTGCTTGTCAGAGAAGATGGACATATAATGCTCTCTGATTTTGAC</genome_strand>
        <mrna_strand>AGGCTCACAAGGGACAGCTGATCAGGAAAGAAAGAATTCTACTAAGGACAGCTCAGCATCAGCCAAAGTTAGTGATGGGGCTAGCAGTATTGCAAAAACAAGTGGAAGTGCCAAAATTAGTGATCGAGCAGATTTTCTTGAGAGTGGTAAGAGCAGCATCTGTAGGGGGAGCACAGGAACTGACGTAAGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTTAACAAACCCCACAAAGCTAATGACTCAAGATGGGAAGCCATTCAAGCTATCCGGACTAAAGATGGGGCATTGGATTTGAGGCACTTCCGGTTGCTGAAGAAGTTGGGAAGTGGTGATATTGGAAGTGTGTATCTGTCTGAGTTGTGTGGAACAAAGTGTTATTTTGCCATGAAAGTTATGGATAAGGCGTCGTTAGCTAGTCGTAAGAAATTGCTTCGTGCACAGACAGAAAGAGAGATTTTGCAGTCCCTGGACCATCCATTTCTCCCAACATTATATAGCCATTTTGAAACAGAAAAGTTCTCATGTCTAGTGATGGAGTTCTGCCCAGGAGGAGACCTGCACACACTCAGACAAAGACAACCAGGGAAGCATTTTTCAGAACAAGCGGTGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTACGTAGCAGAAGTGCTCCTTTCCCTGGAATACCTTCACATGCTTGGCATTGTCTATCGTGATCTC-AGCCAGAAAATGTGCTTGTCAGAGAAGA-GGACATATAATGCTCTCTGATTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E342893" ref_strand="+" ref_description="SGN-E342893 [cTOF-11-I13]">
      <seq>ctcacaagggacagctgatcaggaaagaaagaattctactaaggacagctcagcatcagccaaagttagtgatggggctagcagtattgcaaaaacaagtggaagtgccaaaattagtgatcgagcagattttcttgagagtggtaagagcagcatctgtagggggagcacaggaactgacgtaagtgaggagagtacttctagcagcttgagcagcagcgttaacaaaccccacaaagctaatgactcaagatgggaagccattcaagctatccggactaaagatggggcattggatttgaggcacttccggttgctgaagaagttgggaagtggtgatattggaagtgtgtatctgtctgagttgtgtggaacaaagtgttattttgccatgaaagttatggataaggcgtcgttagctagtcgtaagaaattgcttcgtgcacagacagaaagagagattttgcagtccctggaccatccatttctcccaacattatatagccattttgaaacagaaaagttctcatgtctagtgatggagttctgcccaggaggagacctgcacacactcagacaaagacaaccagggaagcatttttcagaacaagcggtgaaattctacgtagcagaagtgctcctttccctggaataccttcacatgcttggcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="85981" stop="82655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85681" g_stop="85064" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85063" i_stop="83010" i_length="2054">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83009" g_stop="82955" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="673" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E342893" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85681" e_stop="85064"/>
          <exon e_start="83009" e_stop="82955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACAAGGGACAGCTGATCAGGAAAGAAAGAATTCTACTAAGGACAGCTCAGCATCAGCCAAAGTTAGTGATGGGGCTAGCAGTATTGCAAAAACAAGTGGAAGTGCCAAAATTAGTGATCGAGCAGATTTTCTTGAGAGTGGTAAGAGCAGCATCTGTAGGGGGAGCACAGGAACTGACGTAAGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTTAACAAACCCCACAAAGCTAATGACTCAAGATGGGAAGCCATTCAAGCTATCCGGACTAAAGATGGGGCATTGGATTTGAGGCACTTCCGGTTGCTGAAGAAGTTGGGAAGTGGTGATATTGGAAGTGTGTATCTGTCTGAGTTGTGTGGAACAAAGTGTTATTTTGCCATGAAAGTTATGGATAAGGCGTCGTTAGCTAGTCGTAAGAAATTGCTTCGTGCACAGACAGAAAGAGAGATTTTGCAGTCCCTGGACCATCCATTTCTCCCAACATTATATAGCCATTTTGAAACAGAAAAGTTCTCATGTCTAGTGATGGAGTTCTGCCCAGGAGGAGACCTGCACACACTCAGACAAAGACAACCAGGGAAGCATTTTTCAGAACAAGCGGTGAAGTATGATACTTGATCTCTGACCTTACTGTCTTAAGATAGCTTGCTCTTCTTTCTTTTAAAAAAGTTGGCATATTTTGTTGCTTTCAGTCTGGAGTATTATTTTCACAATTTACAGCATTGACTGTATCTTTAACTGTTAGATCTAGATATGTTTTTGTTGTGGCTGTAGACATAATTAATCCAACATTATCCATTATTTCTTAATTTAAATTAATTGATCTAACAGATATACTTATAACAATCAAGAGATATAAATGCCTTTACATGACATGATTTTCTTGGTGGTACCAATAAATTAAATTGAAGCAAACTGACTTGATATGCAAGTTCTTTCAAGTCCCTAAAGCAGTCGGATTGCATGTACTAACCAGTTATATCATTTACCTCTGGACAATGAAATGCATGTTGACCCCACTGTTAGTTCAAAAACCTTGTTATTTGATATTCTGACTTTATTATTTGCGCAGTAGTTTAGATTCTAAATCTTAACTACTTTTGGGATCATTTGCCTAGTTTTTTTCTTCCATAGGTGGTTTCATTTGCTTGTGTTTTTCTTACTAAGCCAAGTGGATGTTTAAACTGGTTTATATTCTTCTTCTGTGTTGGATCTATACGAAGTTGTTTTGGGTCTCTGTTGCCTACTGCATGTTCTTCTTGTCAATTATTTCCAATTCGATAGCTGCAAGTTAGTGTGACCACTACTTTAATTGGACATGATAAATGCTGTTTATTTTACTTTTAAGGTTTGGTGCCTGCAGGGTCATAACATATTTTTTGTAGTCATTAAGATACTGTTTGTTGTGTGGTCCTGTAGTTGGGGTAATCAGCTAATGTGCAGGCTGGTGTTTTTCTCTTTTTGGCAAATGAATCCTTCAGTTTAGTAGTCATCCACCTAATTTTAAATATTAAGAAACATTATTGATTTGTTGGTTGGTGTTGGATTATTGAGAGACTGATTAATTCTCACTTTGACTCATTCCTGTGACCTCCTTTCATTTTGTCATTTGCTTTAAAACATTGACCTCTTTAGTGTAATGGGGAACTTTTATTTGGTGAAGTTAATAGTTGTAACAGAAATATTTACTTTGTCAAAAATATTAGATTCAATTGTATGTGACATCTTAAAATTTTCCTGGCTGTTCTGCTATTAATTTGATATCTCTAGCAAACTCTTATTATAACCCATCCAACTGTATTTTCAATGTCTGCATAACTCAAATTCGACTAGTTTATACAAGACGGAGGAAGCATCTAAATAACCAGATCTAGGGCAAGTGTTGTGTTCCCCTTCCCTAGAATAAATGGGGAAAATGTTGAAACCCAAATAAGGGATGATACTTTGGACCAGTGAAAAGGTTGTCACCGTCGGACTAAACCATTACCATTCAGTAATACTCTTTTTTTTGGGTGGTGGTGGTGGTGGTGGGTGGGAGACACCTTTCTGGCAACGTCTTTGTTTGATGATTCTTGCCCGTCTCCCTAGTCACTGGAATCATGAAAGCTGTAACCAGCTCTTCAATTTTGTTGGCAGTTCTCTCTTCCTTGCAATTAAAATCTTCCCACCTTGCACCCAAGGGTGTGGCCTAGTGGTCAATAAAGTGGGTTGAGAACCATGTGGTCTCTGGTTCAAAACCAATTGGAAGCAAAAAAACTAGCAGGTTTGTTCTCATCTGTTCAAGCCTTGATAGACAGTTTATCTGTTGGCTGTGCTAGTGGGAGGGGTCTAAAAAATTGCATACCATGCATATGAAGAAAGTTTTAAATTAGTGTATTCATACTTGTTTCTTGACATGATTTGAATGGGATGTTGCATTATTTCGGAATATATGAAGTATCATAAATATTTGTGTATTTTTCTTTGGAGTTGAATAGTAGATATAAGCCTTCGGTTGCTTGTGCTAAAACTCCAATGAAGAAAGCAGGAAGAAATTATCAGGATTTTCATTTCTGCTATCTGCCTTTACTCAATTCCAAACTCATGAACGAAAAGTATACTATGTTGGTGGCTGCAGTTTATTGATTTGCTTGTGTTGTATTGTATCTTAAAATTGCAGATTCTACGTAGCAGAAGTGCTCCTTTCCCTGGAATACCTTCACATGCTTGGCATT</genome_strand>
        <mrna_strand>CTCACAAGGGACAGCTGATCAGGAAAGAAAGAATTCTACTAAGGACAGCTCAGCATCAGCCAAAGTTAGTGATGGGGCTAGCAGTATTGCAAAAACAAGTGGAAGTGCCAAAATTAGTGATCGAGCAGATTTTCTTGAGAGTGGTAAGAGCAGCATCTGTAGGGGGAGCACAGGAACTGACGTAAGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTTAACAAACCCCACAAAGCTAATGACTCAAGATGGGAAGCCATTCAAGCTATCCGGACTAAAGATGGGGCATTGGATTTGAGGCACTTCCGGTTGCTGAAGAAGTTGGGAAGTGGTGATATTGGAAGTGTGTATCTGTCTGAGTTGTGTGGAACAAAGTGTTATTTTGCCATGAAAGTTATGGATAAGGCGTCGTTAGCTAGTCGTAAGAAATTGCTTCGTGCACAGACAGAAAGAGAGATTTTGCAGTCCCTGGACCATCCATTTCTCCCAACATTATATAGCCATTTTGAAACAGAAAAGTTCTCATGTCTAGTGATGGAGTTCTGCCCAGGAGGAGACCTGCACACACTCAGACAAAGACAACCAGGGAAGCATTTTTCAGAACAAGCGGTGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTACGTAGCAGAAGTGCTCCTTTCCCTGGAATACCTTCACATGCTTGGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E202693" ref_strand="+" ref_description="SGN-E202693 [cLEC-19-H10]">
      <seq>acaagggacagctgatcaggaaagaaagaattctactaaggacagctcaggatcagccaaagttagtgatggggctagcagtattgcaaaaacaagtggaagtgccaaaattagtgatcgagcagattttcttgagagtggtaagagcagcatctgtagggggagcacaggaactgacgtaagtgaggagagtacttctagcagcttgagcagcagcgttaacaaaccccacaaagctaatgactcaagatgggaagccattcaagctatccggactaaagatggggcattggatttgaggcacttccggttgctgaagaagttgggaagtggtgatattggaagtgtgtatctgtctgagttgtgtggaacaaagtgttattttgccatgaaagttatggataaggcgtcgttagctagtcgtaagaaattgcttcgtgcacagacagaaagagagattttgcagtccctggaccatccatttctcccaacattatatagccattttgaaacagaaaagttctcatgtctagtgatggagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="85978" stop="84834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85678" g_stop="85134" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E202693" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85678" e_stop="85134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGGGACAGCTGATCAGGAAAGAAAGAATTCTACTAAGGACAGCTCAGCATCAGCCAAAGTTAGTGATGGGGCTAGCAGTATTGCAAAAACAAGTGGAAGTGCCAAAATTAGTGATCGAGCAGATTTTCTTGAGAGTGGTAAGAGCAGCATCTGTAGGGGGAGCACAGGAACTGACGTAAGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTTAACAAACCCCACAAAGCTAATGACTCAAGATGGGAAGCCATTCAAGCTATCCGGACTAAAGATGGGGCATTGGATTTGAGGCACTTCCGGTTGCTGAAGAAGTTGGGAAGTGGTGATATTGGAAGTGTGTATCTGTCTGAGTTGTGTGGAACAAAGTGTTATTTTGCCATGAAAGTTATGGATAAGGCGTCGTTAGCTAGTCGTAAGAAATTGCTTCGTGCACAGACAGAAAGAGAGATTTTGCAGTCCCTGGACCATCCATTTCTCCCAACATTATATAGCCATTTTGAAACAGAAAAGTTCTCATGTCTAGTGATGGAGTTCT</genome_strand>
        <mrna_strand>ACAAGGGACAGCTGATCAGGAAAGAAAGAATTCTACTAAGGACAGCTCAGGATCAGCCAAAGTTAGTGATGGGGCTAGCAGTATTGCAAAAACAAGTGGAAGTGCCAAAATTAGTGATCGAGCAGATTTTCTTGAGAGTGGTAAGAGCAGCATCTGTAGGGGGAGCACAGGAACTGACGTAAGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTTAACAAACCCCACAAAGCTAATGACTCAAGATGGGAAGCCATTCAAGCTATCCGGACTAAAGATGGGGCATTGGATTTGAGGCACTTCCGGTTGCTGAAGAAGTTGGGAAGTGGTGATATTGGAAGTGTGTATCTGTCTGAGTTGTGTGGAACAAAGTGTTATTTTGCCATGAAAGTTATGGATAAGGCGTCGTTAGCTAGTCGTAAGAAATTGCTTCGTGCACAGACAGAAAGAGAGATTTTGCAGTCCCTGGACCATCCATTTCTCCCAACATTATATAGCCATTTTGAAACAGAAAAGTTCTCATGTCTAGTGATGGAGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E396285" ref_strand="+" ref_description="SGN-E396285 [TUS-46-D4]">
      <seq>gtcgcagagcagtcaacctaagggatcttccaactcacttgctgataaattcgattcaaacttatatttgggcaattctaagaattcagctagtggagtaggttctatgcctacagagacaaaaggctcacaagggacagctgatcaggaaagaaagaattctactaaggacagctcagcatcagccaaagttagtgatggggctagcagtattgcaaaaacaagtggaagtgccaaaattagtgatcgagcagattttcttgagagtggtaagagcagcatctgtagggggagcacaggaactgacgtaagtgaggagagtacttctagcagcttgagcagcagcgttaacaaaccccacaaagctaatgactcaagatgggaagccattcaagctatccggactaaagatggggcattggatttgaggcacttccggttgctgaagaagttgggaagtggtgatattggaagtgtgtatctgtctgagttgtgtggaacaaagtgttattttgccatgaaagttatggataaggcgtcgttagctagtcgtaagaaattgcttcgtgcacagacagaaagagagattttgcagtccctggaccatccatttctcccaacattatatagccattttgaaacagaaaagttctcatgtctagtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="86107" stop="84842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85807" g_stop="85142" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E396285" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85807" e_stop="85142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCAGAGCAGTCAACCTAAGGGATCTTCCAACTCACTTGCTGATAAATTCGATTCAAACTTATATTTGGGCAATTCTAAGAATTCAGCTAGTGGAGTAGGTTCTATGCCTACAGAGACAAAAGGCTCACAAGGGACAGCTGATCAGGAAAGAAAGAATTCTACTAAGGACAGCTCAGCATCAGCCAAAGTTAGTGATGGGGCTAGCAGTATTGCAAAAACAAGTGGAAGTGCCAAAATTAGTGATCGAGCAGATTTTCTTGAGAGTGGTAAGAGCAGCATCTGTAGGGGGAGCACAGGAACTGACGTAAGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTTAACAAACCCCACAAAGCTAATGACTCAAGATGGGAAGCCATTCAAGCTATCCGGACTAAAGATGGGGCATTGGATTTGAGGCACTTCCGGTTGCTGAAGAAGTTGGGAAGTGGTGATATTGGAAGTGTGTATCTGTCTGAGTTGTGTGGAACAAAGTGTTATTTTGCCATGAAAGTTATGGATAAGGCGTCGTTAGCTAGTCGTAAGAAATTGCTTCGTGCACAGACAGAAAGAGAGATTTTGCAGTCCCTGGACCATCCATTTCTCCCAACATTATATAGCCATTTTGAAACAGAAAAGTTCTCATGTCTAGTGAT</genome_strand>
        <mrna_strand>GTCGCAGAGCAGTCAACCTAAGGGATCTTCCAACTCACTTGCTGATAAATTCGATTCAAACTTATATTTGGGCAATTCTAAGAATTCAGCTAGTGGAGTAGGTTCTATGCCTACAGAGACAAAAGGCTCACAAGGGACAGCTGATCAGGAAAGAAAGAATTCTACTAAGGACAGCTCAGCATCAGCCAAAGTTAGTGATGGGGCTAGCAGTATTGCAAAAACAAGTGGAAGTGCCAAAATTAGTGATCGAGCAGATTTTCTTGAGAGTGGTAAGAGCAGCATCTGTAGGGGGAGCACAGGAACTGACGTAAGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTTAACAAACCCCACAAAGCTAATGACTCAAGATGGGAAGCCATTCAAGCTATCCGGACTAAAGATGGGGCATTGGATTTGAGGCACTTCCGGTTGCTGAAGAAGTTGGGAAGTGGTGATATTGGAAGTGTGTATCTGTCTGAGTTGTGTGGAACAAAGTGTTATTTTGCCATGAAAGTTATGGATAAGGCGTCGTTAGCTAGTCGTAAGAAATTGCTTCGTGCACAGACAGAAAGAGAGATTTTGCAGTCCCTGGACCATCCATTTCTCCCAACATTATATAGCCATTTTGAAACAGAAAAGTTCTCATGTCTAGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E737867" ref_strand="+" ref_description="SGN-E737867 [LC11CB02]">
      <seq>ctgcaggaattcggcacgaggtttggttgtttttgaggaactttctatgttgttgatggagcagcttatgttggtgtgtttttctaataagaaggggattaatggcttaagcttggagtccgagtgatgggtttggtaagcacagtgtattgaggtatcaatattcatttctatggcctcgacaccttcttccaagagtttagccgaaaagctgaacaagacaactggaaatcagacaacagaacggagttctcgcaggtctacaccttcccaagttccaaaaaataacaaattagagaccacgatttctaaagaacgagaagttgtatcgaaacagcttgtggtagaatcaactgtcacccaaaagtcgcagagcagtcaacctaagggatcttccaactcacttgctgataaattcgattcaaacttatatttgggcaattctaagaattcagctagtggagtaggttctatgcctacagagacaaaaggctcacaagggacagctgatcaggaaagaaagaattctactaaggacagctcagcatcagccaaagttagtgatggggctagcagtattgcaaaaacaagtggaagtgccaaaattagtgatcgagcagattttcttgagagtggtaagagcagcatctgtagggggagcacaggaactgacgtaagtgaggagagtacttctagcagcttgagcagcagcgttaacaaaccccacaaagctaatgactcaagatgggaagccattcaagctatccggactaaagatggggcattggatttgaggcacttccggttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="86855" stop="85064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86570" g_stop="86534" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.649"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86533" i_stop="86137" i_length="397">
            <donor d_prob="0.312" d_score="0.00"/>
            <acceptor a_prob="0.659" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86136" g_stop="85364" g_length="773"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="810" r_length="773" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E737867" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86570" e_stop="86534"/>
          <exon e_start="86136" e_stop="85364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTGGAGGAAAAAAAGGGATTTGGTTGTTTTTGAGGTAAATGTTTGAGACATTAGGTGTCTTGGACCTTTAATCGTTGCTTAGTAATAATGATCTGCTATCTGTTGCTTGATTTTTGTTGGATTTGTCTACTAAATGAATGTTGATTTTTGACCTTGTGGAGTTTGGTTTCATCATTTCAACCCCTTTGTGTGTTCAGATCTTTTACTTTCTATTTTTCCCTTGCTTAATGATTTCAAGTTCTGCTTCTTTTTGTCTTTTTGAAATAGTGCCATCTTTTGTTGTTTTATAGTTCTATTACTTCAAGTTTGGAACTTTTGACTGTGATAGTGCGGTTGAGTTGTGTTTTTATGATTTTCGTGTTCCAATTTAGGAACTTTTGACTGTAATTACGCGGTAGGCTGTGTTTTTATGGTTTCTTGTTTCAATTTAGGAACTTTCTATGTTGTTGATGGAGCAGCTTATGTTGGTGTGTTTTTCTAATAAGAAGGGGATTAATGGCTTAAGCTTGGAGTCCGAGTGATGGGTTTGGTAAGCACAGTGTATTGAGGTATCAATATTCATTTCTATGGCCTCGACACCTTCTTCCAAGAGTTTAGCCGAAAAGCTGAACAAGACAACTGGAAATCAGACAACAGAACGGAGTTCTCGCAGGTCTACACCTTCCCAAGTTCCAAAAAATAACAAATTAGAGACCACGATTTCTAAAGAACGAGAAGTTGTATCGAAACAGCTTGTGGTAGAATCAACTGTCACCCAAAAGTCGCAGAGCAGTCAACCTAAGGGATCTTCCAACTCACTTGCTGATAAATTCGATTCAAACTTATATTTGGGCAATTCTAAGAATTCAGCTAGTGGAGTAGGTTCTATGCCTACAGAGACAAAAGGCTCACAAGGGACAGCTGATCAGGAAAGAAAGAATTCTACTAAGGACAGCTCAGCATCAGCCAAAGTTAGTGATGGGGCTAGCAGTATTGCAAAAACAAGTGGAAGTGCCAAAATTAGTGATCGAGCAGATTTTCTTGAGAGTGGTAAGAGCAGCATCTGTAGGGGGAGCACAGGAACTGACGTAAGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTTAACAAACCCCACAAAGCTAATGACTCAAGATGGGAAGCCATTCAAGCTATCCGGACTAAAGATGGGGCATTGGATTTGAGGCACTTCCGGTTGCT</genome_strand>
        <mrna_strand>CTGCAGGAATTCGGCACGAGGTTTGGTTGTTTTTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................GAACTTTCTATGTTGTTGATGGAGCAGCTTATGTTGGTGTGTTTTTCTAATAAGAAGGGGATTAATGGCTTAAGCTTGGAGTCCGAGTGATGGGTTTGGTAAGCACAGTGTATTGAGGTATCAATATTCATTTCTATGGCCTCGACACCTTCTTCCAAGAGTTTAGCCGAAAAGCTGAACAAGACAACTGGAAATCAGACAACAGAACGGAGTTCTCGCAGGTCTACACCTTCCCAAGTTCCAAAAAATAACAAATTAGAGACCACGATTTCTAAAGAACGAGAAGTTGTATCGAAACAGCTTGTGGTAGAATCAACTGTCACCCAAAAGTCGCAGAGCAGTCAACCTAAGGGATCTTCCAACTCACTTGCTGATAAATTCGATTCAAACTTATATTTGGGCAATTCTAAGAATTCAGCTAGTGGAGTAGGTTCTATGCCTACAGAGACAAAAGGCTCACAAGGGACAGCTGATCAGGAAAGAAAGAATTCTACTAAGGACAGCTCAGCATCAGCCAAAGTTAGTGATGGGGCTAGCAGTATTGCAAAAACAAGTGGAAGTGCCAAAATTAGTGATCGAGCAGATTTTCTTGAGAGTGGTAAGAGCAGCATCTGTAGGGGGAGCACAGGAACTGACGTAAGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTTAACAAACCCCACAAAGCTAATGACTCAAGATGGGAAGCCATTCAAGCTATCCGGACTAAAGATGGGGCATTGGATTTGAGGCACTTCCGGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E737728" ref_strand="+" ref_description="SGN-E737728 [LC11AB02]">
      <seq>ttttgaggaactttctatgttgttgatggagcagcttatgttggtgtgtttttctaataagaaggggattaatggcttaagcttggagtccgagtgatgggtttggtaagcacagtgtattgaggtatcaatattcatttctatggcctcgacaccttcttccaagagtttagccgaaaagctgaacaagacaactggaaatcagacaacagaacggagttctcgcaggtctacaccttcccaagttccaaaaaataacaaattagagaccacgatttctaaagaacgagaagttgtatcgaaacagcttgtggtagaatcaactgtcacccaaaagtcgcagagcagtcaacctaagggatcttccaactcacttgctgataaattcgattcaaacttatatttgggcaattctaagaattcagctagtggagtaggttctatgcctacagagacaaaaggctcacaagggacagctgatcaggaaagaaagaattctactaaggacagctcagcatcagccaaagttagtgatggggctagcagtattgcaaaaacaagtggaagtgccaaaattagtgatcgagcagattttcttgagagtggtaagagcagcatctgtagggggagcacaggaactgacgtaagtgaggagagtacttctagcagcttgagcagcagcgttaacaaaccccacaaagctaatggactcaagatgggaagccattcaagctatccggactaaagatggggcattggatttgaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="86441" stop="85077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86143" g_stop="85377" g_length="767"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="768" r_length="768" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E737728" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86143" e_stop="85377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTAGGAACTTTCTATGTTGTTGATGGAGCAGCTTATGTTGGTGTGTTTTTCTAATAAGAAGGGGATTAATGGCTTAAGCTTGGAGTCCGAGTGATGGGTTTGGTAAGCACAGTGTATTGAGGTATCAATATTCATTTCTATGGCCTCGACACCTTCTTCCAAGAGTTTAGCCGAAAAGCTGAACAAGACAACTGGAAATCAGACAACAGAACGGAGTTCTCGCAGGTCTACACCTTCCCAAGTTCCAAAAAATAACAAATTAGAGACCACGATTTCTAAAGAACGAGAAGTTGTATCGAAACAGCTTGTGGTAGAATCAACTGTCACCCAAAAGTCGCAGAGCAGTCAACCTAAGGGATCTTCCAACTCACTTGCTGATAAATTCGATTCAAACTTATATTTGGGCAATTCTAAGAATTCAGCTAGTGGAGTAGGTTCTATGCCTACAGAGACAAAAGGCTCACAAGGGACAGCTGATCAGGAAAGAAAGAATTCTACTAAGGACAGCTCAGCATCAGCCAAAGTTAGTGATGGGGCTAGCAGTATTGCAAAAACAAGTGGAAGTGCCAAAATTAGTGATCGAGCAGATTTTCTTGAGAGTGGTAAGAGCAGCATCTGTAGGGGGAGCACAGGAACTGACGTAAGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTTAACAAACCCCACAAAGCTAAT-GACTCAAGATGGGAAGCCATTCAAGCTATCCGGACTAAAGATGGGGCATTGGATTTGAGGC</genome_strand>
        <mrna_strand>TTTTGAGGAACTTTCTATGTTGTTGATGGAGCAGCTTATGTTGGTGTGTTTTTCTAATAAGAAGGGGATTAATGGCTTAAGCTTGGAGTCCGAGTGATGGGTTTGGTAAGCACAGTGTATTGAGGTATCAATATTCATTTCTATGGCCTCGACACCTTCTTCCAAGAGTTTAGCCGAAAAGCTGAACAAGACAACTGGAAATCAGACAACAGAACGGAGTTCTCGCAGGTCTACACCTTCCCAAGTTCCAAAAAATAACAAATTAGAGACCACGATTTCTAAAGAACGAGAAGTTGTATCGAAACAGCTTGTGGTAGAATCAACTGTCACCCAAAAGTCGCAGAGCAGTCAACCTAAGGGATCTTCCAACTCACTTGCTGATAAATTCGATTCAAACTTATATTTGGGCAATTCTAAGAATTCAGCTAGTGGAGTAGGTTCTATGCCTACAGAGACAAAAGGCTCACAAGGGACAGCTGATCAGGAAAGAAAGAATTCTACTAAGGACAGCTCAGCATCAGCCAAAGTTAGTGATGGGGCTAGCAGTATTGCAAAAACAAGTGGAAGTGCCAAAATTAGTGATCGAGCAGATTTTCTTGAGAGTGGTAAGAGCAGCATCTGTAGGGGGAGCACAGGAACTGACGTAAGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTTAACAAACCCCACAAAGCTAATGGACTCAAGATGGGAAGCCATTCAAGCTATCCGGACTAAAGATGGGGCATTGGATTTGAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E297603" ref_strand="+" ref_description="SGN-E297603 [cLET-28-J4]">
      <seq>tcgcagagcagtcaacctaagggatcttccaactcacttgctgataaattcgattcaaacttatatttgggcaattctaagaattcagctagtggagtaggttctatgcctacagagacaaaaggctcacaagggacagctgatcaggaaagaaagaattctactaaggacagctcagcatcagccaaagttagtgatggggctagcagtattgcaaaaacaagtggaagtgccaaaattagtgatcgagcagattttcttgagagtggtaagagcagcatctgtagggggagcacaggaactgacgtaagtgaggagagtacttctagcagcttgagcagcagcgttaacaaaccccacaaagctaatgactcaagatgggaagccattcaagctatccggactaaagatgggggcattggatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="86106" stop="85081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85806" g_stop="85381" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E297603" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85806" e_stop="85381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCAGAGCAGTCAACCTAAGGGATCTTCCAACTCACTTGCTGATAAATTCGATTCAAACTTATATTTGGGCAATTCTAAGAATTCAGCTAGTGGAGTAGGTTCTATGCCTACAGAGACAAAAGGCTCACAAGGGACAGCTGATCAGGAAAGAAAGAATTCTACTAAGGACAGCTCAGCATCAGCCAAAGTTAGTGATGGGGCTAGCAGTATTGCAAAAACAAGTGGAAGTGCCAAAATTAGTGATCGAGCAGATTTTCTTGAGAGTGGTAAGAGCAGCATCTGTAGGGGGAGCACAGGAACTGACGTAAGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTTAACAAACCCCACAAAGCTAATGACTCAAGATGGGAAGCCATTCAAGCTATCCGGACTAAAGAT-GGGGCATTGGATTTG</genome_strand>
        <mrna_strand>TCGCAGAGCAGTCAACCTAAGGGATCTTCCAACTCACTTGCTGATAAATTCGATTCAAACTTATATTTGGGCAATTCTAAGAATTCAGCTAGTGGAGTAGGTTCTATGCCTACAGAGACAAAAGGCTCACAAGGGACAGCTGATCAGGAAAGAAAGAATTCTACTAAGGACAGCTCAGCATCAGCCAAAGTTAGTGATGGGGCTAGCAGTATTGCAAAAACAAGTGGAAGTGCCAAAATTAGTGATCGAGCAGATTTTCTTGAGAGTGGTAAGAGCAGCATCTGTAGGGGGAGCACAGGAACTGACGTAAGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTTAACAAACCCCACAAAGCTAATGACTCAAGATGGGAAGCCATTCAAGCTATCCGGACTAAAGATGGGGGCATTGGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E328993" ref_strand="+" ref_description="SGN-E328993 [cTOC-24-G19]">
      <seq>gaaaaaaagggatttggttgtttttgaggaactttctatgttgttgatggagcagcttatgttggtgtgtttttctaataagaaggggattaatggcttaagcttggagtccgagtgatgggtttggtaagcacagtgtattgaggtatcaatattcatttctatggcctcgacaccttcttccaagagtttagccgaaaagctgaacaagacaactggaaatcagacaacagaacggagttctcgcaggtctacaccttcccaagttccaaaaaataacaaattagagaccacgatttctaaagaacgagaagttgtatcgaaacagcttgtggtagaatcaactgtcacccaaaagtcgcagagcagtcaacctaagggatcttccaactcacttgctgataaattcgattcaaacttatatttgggcaattctaagaattcagctagtggagtaggttctatgcctacagagacaaaaggctcacaagggacagctgatcaggaaagaaagaattctactaaggacagctcagcatcagccaaagttagtgatggggctagcagtattgcaaaaacaagtggaagtgccaaaattagtgatcgagcagattttcttgagagtggtaagagcagcatctgtanggggagcacaggaacttgacgtagtgaggagagtacttctagcagcttgagcagcagcggtaacaacccccaccaagctatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="86861" stop="85134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86561" g_stop="86534" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86533" i_stop="86137" i_length="397">
            <donor d_prob="0.312" d_score="0.00"/>
            <acceptor a_prob="0.659" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86136" g_stop="85434" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="730" r_length="702" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E328993" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86561" e_stop="86534"/>
          <exon e_start="86136" e_stop="85434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAAAGGGATTTGGTTGTTTTTGAGGTAAATGTTTGAGACATTAGGTGTCTTGGACCTTTAATCGTTGCTTAGTAATAATGATCTGCTATCTGTTGCTTGATTTTTGTTGGATTTGTCTACTAAATGAATGTTGATTTTTGACCTTGTGGAGTTTGGTTTCATCATTTCAACCCCTTTGTGTGTTCAGATCTTTTACTTTCTATTTTTCCCTTGCTTAATGATTTCAAGTTCTGCTTCTTTTTGTCTTTTTGAAATAGTGCCATCTTTTGTTGTTTTATAGTTCTATTACTTCAAGTTTGGAACTTTTGACTGTGATAGTGCGGTTGAGTTGTGTTTTTATGATTTTCGTGTTCCAATTTAGGAACTTTTGACTGTAATTACGCGGTAGGCTGTGTTTTTATGGTTTCTTGTTTCAATTTAGGAACTTTCTATGTTGTTGATGGAGCAGCTTATGTTGGTGTGTTTTTCTAATAAGAAGGGGATTAATGGCTTAAGCTTGGAGTCCGAGTGATGGGTTTGGTAAGCACAGTGTATTGAGGTATCAATATTCATTTCTATGGCCTCGACACCTTCTTCCAAGAGTTTAGCCGAAAAGCTGAACAAGACAACTGGAAATCAGACAACAGAACGGAGTTCTCGCAGGTCTACACCTTCCCAAGTTCCAAAAAATAACAAATTAGAGACCACGATTTCTAAAGAACGAGAAGTTGTATCGAAACAGCTTGTGGTAGAATCAACTGTCACCCAAAAGTCGCAGAGCAGTCAACCTAAGGGATCTTCCAACTCACTTGCTGATAAATTCGATTCAAACTTATATTTGGGCAATTCTAAGAATTCAGCTAGTGGAGTAGGTTCTATGCCTACAGAGACAAAAGGCTCACAAGGGACAGCTGATCAGGAAAGAAAGAATTCTACTAAGGACAGCTCAGCATCAGCCAAAGTTAGTGATGGGGCTAGCAGTATTGCAAAAACAAGTGGAAGTGCCAAAATTAGTGATCGAGCAGATTTTCTTGAGAGTGGTAAGAGCAGCATCTGTAGGGGGAGCACAGGAAC-TGACGTAAGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTTAACAAACCCCACAAAGCTAATGACT</genome_strand>
        <mrna_strand>GAAAAAAAGGGATTTGGTTGTTTTTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................GAACTTTCTATGTTGTTGATGGAGCAGCTTATGTTGGTGTGTTTTTCTAATAAGAAGGGGATTAATGGCTTAAGCTTGGAGTCCGAGTGATGGGTTTGGTAAGCACAGTGTATTGAGGTATCAATATTCATTTCTATGGCCTCGACACCTTCTTCCAAGAGTTTAGCCGAAAAGCTGAACAAGACAACTGGAAATCAGACAACAGAACGGAGTTCTCGCAGGTCTACACCTTCCCAAGTTCCAAAAAATAACAAATTAGAGACCACGATTTCTAAAGAACGAGAAGTTGTATCGAAACAGCTTGTGGTAGAATCAACTGTCACCCAAAAGTCGCAGAGCAGTCAACCTAAGGGATCTTCCAACTCACTTGCTGATAAATTCGATTCAAACTTATATTTGGGCAATTCTAAGAATTCAGCTAGTGGAGTAGGTTCTATGCCTACAGAGACAAAAGGCTCACAAGGGACAGCTGATCAGGAAAGAAAGAATTCTACTAAGGACAGCTCAGCATCAGCCAAAGTTAGTGATGGGGCTAGCAGTATTGCAAAAACAAGTGGAAGTGCCAAAATTAGTGATCGAGCAGATTTTCTTGAGAGTGGTAAGAGCAGCATCTGTANGGGGAGCACAGGAACTTGACGT-AGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGGTAACAACCCCCACCAAGCT-ATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E318210" ref_strand="+" ref_description="SGN-E318210 [cTOA-29-F22]">
      <seq>aagggatttggttgtttttgaggaactttctatgttgttgatggagcagcttatgttggtgtgtttttctaataagaaggggattaatggcttaagcttggagtccgagtgatgggtttggtaagcacagtgtattgaggtatcaatattcatttctatggcctcgacaccttcttccaagagtttagccgaaaagctgaacaagacaactggaaatcagacaacagaacggagttctcgcaggtctacaccttcccaagttccaaaaaataacaaattagagaccacgatttctaaagaacgagaagttgtatcgaaacagcttgtggtagaatcaactgtcacccaaaagtcgcagagcagtcaacctaagggatcttccaactcacttgctgataaattcgattcaaacttatatttgggcaattctaagaattcagctagtggagtaggttctatgcctacagagacaaaaggctcacaagggacagctgatcaggaaagaaagaattctactaaggacagctcagcatcagccaaagttagtgatggggctagcagtattgcaaaaacaagtggaagtgccaaaattagtgatcgagcagattttcttgagagtggtaagagcagcatctgtanggggagcacaggaaactgacgtagtgaggagagtacttctagcagcttgagcagcagcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="86855" stop="85159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86555" g_stop="86534" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86533" i_stop="86137" i_length="397">
            <donor d_prob="0.312" d_score="0.00"/>
            <acceptor a_prob="0.659" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86136" g_stop="85459" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="700" r_length="678" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E318210" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86555" e_stop="86534"/>
          <exon e_start="86136" e_stop="85459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGATTTGGTTGTTTTTGAGGTAAATGTTTGAGACATTAGGTGTCTTGGACCTTTAATCGTTGCTTAGTAATAATGATCTGCTATCTGTTGCTTGATTTTTGTTGGATTTGTCTACTAAATGAATGTTGATTTTTGACCTTGTGGAGTTTGGTTTCATCATTTCAACCCCTTTGTGTGTTCAGATCTTTTACTTTCTATTTTTCCCTTGCTTAATGATTTCAAGTTCTGCTTCTTTTTGTCTTTTTGAAATAGTGCCATCTTTTGTTGTTTTATAGTTCTATTACTTCAAGTTTGGAACTTTTGACTGTGATAGTGCGGTTGAGTTGTGTTTTTATGATTTTCGTGTTCCAATTTAGGAACTTTTGACTGTAATTACGCGGTAGGCTGTGTTTTTATGGTTTCTTGTTTCAATTTAGGAACTTTCTATGTTGTTGATGGAGCAGCTTATGTTGGTGTGTTTTTCTAATAAGAAGGGGATTAATGGCTTAAGCTTGGAGTCCGAGTGATGGGTTTGGTAAGCACAGTGTATTGAGGTATCAATATTCATTTCTATGGCCTCGACACCTTCTTCCAAGAGTTTAGCCGAAAAGCTGAACAAGACAACTGGAAATCAGACAACAGAACGGAGTTCTCGCAGGTCTACACCTTCCCAAGTTCCAAAAAATAACAAATTAGAGACCACGATTTCTAAAGAACGAGAAGTTGTATCGAAACAGCTTGTGGTAGAATCAACTGTCACCCAAAAGTCGCAGAGCAGTCAACCTAAGGGATCTTCCAACTCACTTGCTGATAAATTCGATTCAAACTTATATTTGGGCAATTCTAAGAATTCAGCTAGTGGAGTAGGTTCTATGCCTACAGAGACAAAAGGCTCACAAGGGACAGCTGATCAGGAAAGAAAGAATTCTACTAAGGACAGCTCAGCATCAGCCAAAGTTAGTGATGGGGCTAGCAGTATTGCAAAAACAAGTGGAAGTGCCAAAATTAGTGATCGAGCAGATTTTCTTGAGAGTGGTAAGAGCAGCATCTGTAGGGGGAGCACAGG-AACTGACGTAAGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTT</genome_strand>
        <mrna_strand>AAGGGATTTGGTTGTTTTTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................GAACTTTCTATGTTGTTGATGGAGCAGCTTATGTTGGTGTGTTTTTCTAATAAGAAGGGGATTAATGGCTTAAGCTTGGAGTCCGAGTGATGGGTTTGGTAAGCACAGTGTATTGAGGTATCAATATTCATTTCTATGGCCTCGACACCTTCTTCCAAGAGTTTAGCCGAAAAGCTGAACAAGACAACTGGAAATCAGACAACAGAACGGAGTTCTCGCAGGTCTACACCTTCCCAAGTTCCAAAAAATAACAAATTAGAGACCACGATTTCTAAAGAACGAGAAGTTGTATCGAAACAGCTTGTGGTAGAATCAACTGTCACCCAAAAGTCGCAGAGCAGTCAACCTAAGGGATCTTCCAACTCACTTGCTGATAAATTCGATTCAAACTTATATTTGGGCAATTCTAAGAATTCAGCTAGTGGAGTAGGTTCTATGCCTACAGAGACAAAAGGCTCACAAGGGACAGCTGATCAGGAAAGAAAGAATTCTACTAAGGACAGCTCAGCATCAGCCAAAGTTAGTGATGGGGCTAGCAGTATTGCAAAAACAAGTGGAAGTGCCAAAATTAGTGATCGAGCAGATTTTCTTGAGAGTGGTAAGAGCAGCATCTGTANGGGGAGCACAGGAAACTGACGT-AGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E292786" ref_strand="+" ref_description="SGN-E292786 [cLET-11-A9]">
      <seq>tcgcagagcagtcaacctaagggatcttccaactcacttgctgataaattcgattcaaacttatatttgggcaattctaagaattcagctagtggagtaggttctatgcctacagagacaaaaggctcacaagggacagctgatcaggaaagaaagaattctactaaggacagctcagcatcagccaaagttagtgatggggctagcagtattgcaaaaacaagtggaagtgccaaaattagtgatcgagcagattttcttgagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="86106" stop="85240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85806" g_stop="85540" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E292786" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>267</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85806" e_stop="85540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCAGAGCAGTCAACCTAAGGGATCTTCCAACTCACTTGCTGATAAATTCGATTCAAACTTATATTTGGGCAATTCTAAGAATTCAGCTAGTGGAGTAGGTTCTATGCCTACAGAGACAAAAGGCTCACAAGGGACAGCTGATCAGGAAAGAAAGAATTCTACTAAGGACAGCTCAGCATCAGCCAAAGTTAGTGATGGGGCTAGCAGTATTGCAAAAACAAGTGGAAGTGCCAAAATTAGTGATCGAGCAGATTTTCTTGAGAGT</genome_strand>
        <mrna_strand>TCGCAGAGCAGTCAACCTAAGGGATCTTCCAACTCACTTGCTGATAAATTCGATTCAAACTTATATTTGGGCAATTCTAAGAATTCAGCTAGTGGAGTAGGTTCTATGCCTACAGAGACAAAAGGCTCACAAGGGACAGCTGATCAGGAAAGAAAGAATTCTACTAAGGACAGCTCAGCATCAGCCAAAGTTAGTGATGGGGCTAGCAGTATTGCAAAAACAAGTGGAAGTGCCAAAATTAGTGATCGAGCAGATTTTCTTGAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E298157" ref_strand="+" ref_description="SGN-E298157 [cLEW-9-G24]">
      <seq>gttcttatcttcttttatgtggtgtttgactgctctttaatgtctacattttaatgttttgctttgttttaggttcctgtttcctggaggaaaaaaagggattcggttgtttttgaggaactttctatgttgttgatggagcagcttatgttggtgtgtttttctaataagaaggggattaatggcttaagcttggagtccgagtgatgggtttggtaagcacagtgtattgaggtatcaatattcatttctatggcctcgacaccttcttccaagagtttagccgaatagctgaacaatacaactggaaatcagacaacagaactgagttctcgcagtgtctacaccttcccaagttccaaacattaacaaattatagaccacgatttcttaagaacgagaagttgtatcgaaacagcttgtggtagaatcaactgtcacccaaaagtcgcagagcagtcaacctaagggatcttccaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="86950" stop="85472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86650" g_stop="86534" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86533" i_stop="86137" i_length="397">
            <donor d_prob="0.312" d_score="0.98"/>
            <acceptor a_prob="0.659" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86136" g_stop="85772" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="483" r_length="366" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E298157" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86650" e_stop="86534"/>
          <exon e_start="86136" e_stop="85772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTATCTTCTTCTATGTGGTGTTTGAGTGCTCTTTAATGTCTACATTTTAATGTTTTGCTTTGTTTTAGGTTCCTGTTTCCTGGAGGAAAAAAAGGGATTTGGTTGTTTTTGAGGTAAATGTTTGAGACATTAGGTGTCTTGGACCTTTAATCGTTGCTTAGTAATAATGATCTGCTATCTGTTGCTTGATTTTTGTTGGATTTGTCTACTAAATGAATGTTGATTTTTGACCTTGTGGAGTTTGGTTTCATCATTTCAACCCCTTTGTGTGTTCAGATCTTTTACTTTCTATTTTTCCCTTGCTTAATGATTTCAAGTTCTGCTTCTTTTTGTCTTTTTGAAATAGTGCCATCTTTTGTTGTTTTATAGTTCTATTACTTCAAGTTTGGAACTTTTGACTGTGATAGTGCGGTTGAGTTGTGTTTTTATGATTTTCGTGTTCCAATTTAGGAACTTTTGACTGTAATTACGCGGTAGGCTGTGTTTTTATGGTTTCTTGTTTCAATTTAGGAACTTTCTATGTTGTTGATGGAGCAGCTTATGTTGGTGTGTTTTTCTAATAAGAAGGGGATTAATGGCTTAAGCTTGGAGTCCGAGTGATGGGTTTGGTAAGCACAGTGTATTGAGGTATCAATATTCATTTCTATGGCCTCGACACCTTCTTCCAAGAGTTTAGCCGAAAAGCTGAACAAGACAACTGGAAATCAGACAACAGAACGGAGTTCTCGCAG-GTCTACACCTTCCCAAGTTCCAAAAAATAACAAATTAGAGACCACGATTTCTAAAGAACGAGAAGTTGTATCGAAACAGCTTGTGGTAGAATCAACTGTCACCCAAAAGTCGCAGAGCAGTCAACCTAAGGGATCTTCCAACTC</genome_strand>
        <mrna_strand>GTTCTTATCTTCTTTTATGTGGTGTTTGACTGCTCTTTAATGTCTACATTTTAATGTTTTGCTTTGTTTTAGGTTCCTGTTTCCTGGAGGAAAAAAAGGGATTCGGTTGTTTTTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................GAACTTTCTATGTTGTTGATGGAGCAGCTTATGTTGGTGTGTTTTTCTAATAAGAAGGGGATTAATGGCTTAAGCTTGGAGTCCGAGTGATGGGTTTGGTAAGCACAGTGTATTGAGGTATCAATATTCATTTCTATGGCCTCGACACCTTCTTCCAAGAGTTTAGCCGAATAGCTGAACAATACAACTGGAAATCAGACAACAGAACTGAGTTCTCGCAGTGTCTACACCTTCCCAAGTTCCAAACATTAACAAATTATAGACCACGATTTCTTAAGAACGAGAAGTTGTATCGAAACAGCTTGTGGTAGAATCAACTGTCACCCAAAAGTCGCAGAGCAGTCAACCTAAGGGATCTTCCAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E354187" ref_strand="-" ref_description="SGN-E354187 [cTOS-16-I21]">
      <seq>attaaaagttgcatatgcatcaccgagtcatatatacacatttgctcaatgtacgcgttgtttgcattactggtatcatttcgaaggtggttttagatgattcaacaaaactggaagctgatatcacagatatctcctagaccaactttcattcatatctccttaggataacaatttcgcggatctgtcctatgttggacagaatgtttttggttcgatgaaccccaaaccaggaaagtcaatcagaaaaatgaagaattctccgcgtttgtgaagactgcctcagaaattgccaagctagagatagttgtgcctgataagtttcatttcatgtgagaactcattagtccatttgagcctgttgtttctgtttgttactgttgtctcttttttcactattcgttcattctactgacgatctttcataaacaacttctctacctactttatcattcctggacttcccctgaaaaaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="89498" stop="16812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89197" g_stop="88739" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="470" r_length="459" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88738" i_stop="88024" i_length="715">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.879" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88023" g_stop="87995" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="498" r_length="28" r_score="0.586"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E354187" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354187" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="89197" e_stop="88739"/>
          <exon e_start="88023" e_stop="87995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATGCATCACCGAGTCATATATACACATTTGCTCAATGTACGCGTTGTTTGCATTACTGGTATCATTTCGAAGGTGGTTTTAGATGATTCAACAAAACTGGAAGCTGATATCACAGATATCTCCTAGACCAACTTTCATTCATATCTCCTTAGGATAACAATTTCGCGGATCTGTCCTATGTTGGACAGAATGTTTTTGGTTCGATGAACACCAAACCAGGAAAGTCAATCAGAAAAATGAAGAATTCTCCGCGTTTGTGAAGACTGCCTCAGAAATTGCCAAGCTAGAGATAGTTGTGCCTGATAAGTTTCATTTCATGTGAGAACTCATTAGTCCATTTGAGCCTGTTGTTTCTGTTTGTTACTGTTGTCTCTTTTTTCACTATTCGTTCATTCTACTGACGATCTTTCATAAACAACTTCTCTACCTACTTTATCATTCCTGGACTTACACTGAATTTTTTGTCGTTGTTGTTGAATCTTCACTAAAATCTTGCAAGTTATTGTTATTACAGAAACATTTGGTCAATTATTGAAAAAGAACATGATTACTCCTTTGTTGCAAAAAAATATAATAGTTGTGGTCAACAATGTCTAGTTGTTTTGTGATGTTACAATTCCTCCAATAAACTATGCAATTGCTCAAATAAACAATGGCTTTGAAAGTGGCATAGGTCAGACCAATTTGACCAAATCATGTCATGTCATGTCTCTTTGTATATATAGTTGTGGAGTACCTCAAATTCGGGTAATCAACTATAATCTAAATTCTAAAAATAATCAAACTCTTTTTCGATTCGTATTATTTGTCTTTTAAAGCTTTTGCTTAATCATGAGAGTATTCATCTACCTACTAATCAACGATCGGATGGATAATATAAATATGTTTTCGATACATAGTATAAGAATCTTTTGTCTTCTAATTTATATAATGTAAAATCAAAAGTCAAGCAGAGCACTAAGTAAACCTTCTGTACGAAAAATTACTAAACTTTAAATAAAATGATATACTTTGAACTCATAATTTCTTGAAATTTCTAATCATTTAGTTGTAAGAACCTAATATGTTCTATTTTTTTTTTAAATACTAAGCAAATTTTGGTATATCTAATTATTTGGCCAGATTCAATCATTATTATATATAATAACATAATTTGCATTAAAAAATTTAGGAAAAAAAGGAAAAATTTGACATTATTCC</genome_strand>
        <mrna_strand>CATATGCATCACCGAGTCATATATACACATTTGCTCAATGTACGCGTTGTTTGCATTACTGGTATCATTTCGAAGGTGGTTTTAGATGATTCAACAAAACTGGAAGCTGATATCACAGATATCTCCTAGACCAACTTTCATTCATATCTCCTTAGGATAACAATTTCGCGGATCTGTCCTATGTTGGACAGAATGTTTTTGGTTCGATGAACCCCAAACCAGGAAAGTCAATCAGAAAAATGAAGAATTCTCCGCGTTTGTGAAGACTGCCTCAGAAATTGCCAAGCTAGAGATAGTTGTGCCTGATAAGTTTCATTTCATGTGAGAACTCATTAGTCCATTTGAGCCTGTTGTTTCTGTTTGTTACTGTTGTCTCTTTTTTCACTATTCGTTCATTCTACTGACGATCTTTCATAAACAACTTCTCTACCTACTTTATCATTCCTGGACTTCCCCTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-AAAAAAAAAAAAAAAAAAAAAAAACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E223424" ref_strand="-" ref_description="SGN-E223424 [cLEL-14-E5]">
      <seq>gaaagctgatatcacagatatctcctagaccaactttcattcatatctccttaggataacaatttcgcggatctgtcctatgttggacagaatgtttttggttcgatgaacaccaaaccaggaaagtcaatcagaaaaatgaagaattctccgcgtttgtgaagactgcctcagaaattgccaagctagagatagttgtgcctgataagtttcatttcatgtgagaactcattagtccatttgagcctgttgtttctgtttgttactgttgtctcttttttcactattcgttcattctactgacgatctttcataaacaacttctctacctactttatcattcctggacttacgctgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="89396" stop="16816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89096" g_stop="88738" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88737" i_stop="88024" i_length="714">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.879" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88023" g_stop="88007" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="376" r_length="17" r_score="0.706"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E223424" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223424" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="89096" e_stop="88738"/>
          <exon e_start="88023" e_stop="88007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGCTGATATCACAGATATCTCCTAGACCAACTTTCATTCATATCTCCTTAGGATAACAATTTCGCGGATCTGTCCTATGTTGGACAGAATGTTTTTGGTTCGATGAACACCAAACCAGGAAAGTCAATCAGAAAAATGAAGAATTCTCCGCGTTTGTGAAGACTGCCTCAGAAATTGCCAAGCTAGAGATAGTTGTGCCTGATAAGTTTCATTTCATGTGAGAACTCATTAGTCCATTTGAGCCTGTTGTTTCTGTTTGTTACTGTTGTCTCTTTTTTCACTATTCGTTCATTCTACTGACGATCTTTCATAAACAACTTCTCTACCTACTTTATCATTCCTGGACTTACACTGAATTTTTTGTCGTTGTTGTTGAATCTTCACTAAAATCTTGCAAGTTATTGTTATTACAGAAACATTTGGTCAATTATTGAAAAAGAACATGATTACTCCTTTGTTGCAAAAAAATATAATAGTTGTGGTCAACAATGTCTAGTTGTTTTGTGATGTTACAATTCCTCCAATAAACTATGCAATTGCTCAAATAAACAATGGCTTTGAAAGTGGCATAGGTCAGACCAATTTGACCAAATCATGTCATGTCATGTCTCTTTGTATATATAGTTGTGGAGTACCTCAAATTCGGGTAATCAACTATAATCTAAATTCTAAAAATAATCAAACTCTTTTTCGATTCGTATTATTTGTCTTTTAAAGCTTTTGCTTAATCATGAGAGTATTCATCTACCTACTAATCAACGATCGGATGGATAATATAAATATGTTTTCGATACATAGTATAAGAATCTTTTGTCTTCTAATTTATATAATGTAAAATCAAAAGTCAAGCAGAGCACTAAGTAAACCTTCTGTACGAAAAATTACTAAACTTTAAATAAAATGATATACTTTGAACTCATAATTTCTTGAAATTTCTAATCATTTAGTTGTAAGAACCTAATATGTTCTATTTTTTTTTTAAATACTAAGCAAATTTTGGTATATCTAATTATTTGGCCAGATTCAATCATTATTATATATAATAACATAATTTGCATTAAAAAATTTAGGAAAAAAAGGAAAAATT</genome_strand>
        <mrna_strand>GAAAGCTGATATCACAGATATCTCCTAGACCAACTTTCATTCATATCTCCTTAGGATAACAATTTCGCGGATCTGTCCTATGTTGGACAGAATGTTTTTGGTTCGATGAACACCAAACCAGGAAAGTCAATCAGAAAAATGAAGAATTCTCCGCGTTTGTGAAGACTGCCTCAGAAATTGCCAAGCTAGAGATAGTTGTGCCTGATAAGTTTCATTTCATGTGAGAACTCATTAGTCCATTTGAGCCTGTTGTTTCTGTTTGTTACTGTTGTCTCTTTTTTCACTATTCGTTCATTCTACTGACGATCTTTCATAAACAACTTCTCTACCTACTTTATCATTCCTGGACTTACGCTGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E747320" ref_strand="+" ref_description="SGN-E747320 [GI|47104642]">
      <seq>attttgcagaaatgggatcttctgaaggtcgaagagcaactttaatggtgtacagaaatttactgaaagcagtgaaaaaacatatagggaaggaagaacacaaatctcattttactgatttcagcagggaagaattcaagaagaacataaatctggaatactcaaaagactcttcttttattcagcaaagaattaatcttgctcaaaattatacttatcttctcaatagtatccatcatcataaggacttgctattttcttacaacattgcagtggatagatcaaatgagatgacaaaagtgctgggcaaatctgctgcaagtgtgggtctacgccttcctgatgtttatcagcattaaaagttgcatatgcatcaccgagtcatatatacacatttgctcaatgtacgcgttgtttgcattactggtatcatttcgaaggtggttttagatgattcaacaaaactggaagctgatatcacagatatctcctagaccaactttcattcatatctccttaggataacaatttcgcggatctgtcctatgttggacagaatgtttttggttcgatgaacaccaaaccaggaaagtcaatcagaaaaatgaagaattctccgcgtttgtgaagactgcctcagaaattgccaagctagagatagttgtgcctgataagtttcatttcatgtgagaactcattagtccatttgagcctgttgtttctgtttgttactgttgtctcttttttcactattcgttcattctactgacgatctttcataaacaacttctctacctactttatcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="92135" stop="16818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91835" g_stop="91591" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91590" i_stop="90067" i_length="1524">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90066" g_stop="89947" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="365" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89946" i_stop="89198" i_length="749">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89197" g_stop="88758" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="805" r_length="440" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88757" i_stop="88024" i_length="734">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88023" g_stop="88009" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="806" r_stop="820" r_length="15" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E747320" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91835" e_stop="91591"/>
          <exon e_start="90066" e_stop="89947"/>
          <exon e_start="89197" e_stop="88758"/>
          <exon e_start="88023" e_stop="88009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGCAGAAATGGGATCTTCTGAAGGTCGAAGAGCAACTTTAATGGTGTACAGAAATTTACTGAAAGCAGTGAAAAAACATATAGGGAAGGAAGAACACAAATCTCATTTTACTGATTTCAGCAGGGAAGAATTCAAGAAGAACATAAATCTGGAATACTCAAAAGACTCTTCTTTTATTCAGCAAAGAATTAATCTTGCTCAAAATTATACTTATCTTCTCAATAGTATCCATCATCATAAGGTACCTTCATCTCTTTAATTAATTATCCCCGATTTTTGTTAAGTTGTAGCCCCTCTTTTTCTTGTTACCTGTTGTATTGTATTGTTATTTTAAGTACTATGTTTGTTTTGGTTGTTCTGAAAGATTTCATTTTTATGTATAATTACTTATTTGGTGTGGTTTCATCTGGTGGCAGATTTTGGATTTTCACTAATGAGTTCAAGCTATGAAAGCCGAAAGTTGTTTAACATTTGTTGTATATACATGTATAAACAGTGTAATCCTCAGTCTTACCTAGCTCCGCCCCTATATTTGTGTCGTTATATTATTTGGAAGGGAAGCTTTGTGTAACTGGTAAAATTGTTGTCATGTGATTAGGATGTTATAGTTTGAGTGTGGAAACAACCTCTTGCGGAAATGTGGTAAGATTGCATACAATAGTCCTTCCCGGACTCCATTCATAGCGGAACCTTTTGGTTCTTGACTAAAATGAAATGTATATAGTTAGTTATAACTCGTTATTATAGTATTAGTAGTGGGAAAATATTTAACAACATATTCAGTATAGTTTCACAAAGTGGGGAAGTAGTGTTAGTAATGGAAGAATATATGAAAACAATTGTTACAAAGTAATAAAAAGTTAGTTTGAGAGTCATTTTAGAAGTGTTACATAAATTTGGACATGAGAAGTATGCATATGAAATGTCTAGTTTGTTTATAATGTTTGAATTTACTTAGTTAAGGCATGTAGCCTAGTGAATTGTGTGTATCATAGAAGAGAGTGAGGACAACAGTGTTATGTAAATTGAATGTTTCATATCTAGTTGGTTTGTAATGTTTTAATTTACTTGGTTAAGGCGTATAGCCTAGTGAATTTTAAGTATCACAGAAGGTAGTGAGGATAACAATGTTATGTGGATTGAATGTTTAGCCTTTAAGGTCCTATGCACCTACAGTATTAGAGCTCACAAAAATGTCGATGTCAAGATGTATGTGTAATCACACAGTATCAGGTAAGATTATAAGTCATCACATTCAGTAGAGAGTGGAAGTGGCACAGTGTAGAATAAAATAAGAAGTCACTTGAGATAGTGGTGCAATATTATGATAACTGGAGATGCTACAAGGGAATGAGGTAGGCTGAAAATAATATGGAGGAAAATTCTCATTAGACGTACAATTTCTTGGAATCAATGTGGATTTTGTTTAGGATATAAAGGGTTACATAGAGTCTGTACCAATTGATTAGATCAAGGTTTTGTTATTGTGTCATTGTTAACATTTTACATTCGATCATATTACGGAAGATTTTTTTTCTTCTGATAAGCCTAATGTATAGCTGTAACTAGTCGTCTTTTCCTTATTACTTGACCATATGTTGAAACAATTTAAAGGGTGTCATGGGAAGTCTTTCTTTCTCAACTATAACATTTTTTGTGTGGTAAACTCTCTCCGCGATCATGATTCTTTGGCTCTTACGTTCTTGTTATCTTGAATTATGATAATAATTACATCTTACAAATGTGGCTTTCTTTGTTTTTGCAGGACTTGCTATTTTCTTACAACATTGCAGTGGATAGATCAAATGAGATGACAAAAGTGCTGGGCAAATCTGCTGCAAGTGTGGGTCTACGCCTTCCTGATGTTTATCAGCATTAAAAGTTGGTAGGTTTTCACTGCTTCCTTTCCATTTGCTTGATTATGTGACTTTGTGGTAAACGATGGATCCATTTAAGTTGTGTTGTTTATGGTCCAAAAATTGCCATGTCATAGCACGTTAAGCTTGGAAAGTCTGTATGTCTAAGAAATGAAAGAACCAATGGAAATGACAGAGCTAACAAGCTTCATGTTAGCATGTTACTCAAATTTATATTTTTTCAACTTCTTAATGGATGTTTCCTTTCTAGCAATTCGGATAGGATTTAAATATACTTTTTTTCTTTGTTGATGAATAGTTTTTCCATGTGGAAAGTAACCTCATTGCTGCAATGGCTAATTGGATTCAGGGCTCAGATCATTAATTGGCTCATCTTGATAGAATTTAAGATTTCGAAAGCTGCATTACTCACTGCCTTTCATCTTTTACTTAAGTGGTTGTATTGGACGTGAAATTGTCTAATCCAGGTCAAACAACTGTAATTGATGGAGTTGTAGCTAGAAATACATCTATGTAGGATTAGGTCCGGGTTGGTGGTGGCTCCTGTGTTGCTATTTTCGGGTTGTTGATGAAGATATGCATCTAAGATGTTACTGGACATTGTAGCGGCTCTGATTTTGTCGAAAACCTGATGTACTTTTATATGAATGAGTCGGATTAATTTTTGTGGAAATATGAATGGTTCCATAAAATTTTTAACATTTACTACTTGTCTGCAAAGTTTTTGATCCATTTCCACATTCTTGCTTGTTTGCAGCATATGCATCACCGAGTCATATATACACATTTGCTCAATGTACGCGTTGTTTGCATTACTGGTATCATTTCGAAGGTGGTTTTAGATGATTCAACAAAACTGGAAGCTGATATCACAGATATCTCCTAGACCAACTTTCATTCATATCTCCTTAGGATAACAATTTCGCGGATCTGTCCTATGTTGGACAGAATGTTTTTGGTTCGATGAACACCAAACCAGGAAAGTCAATCAGAAAAATGAAGAATTCTCCGCGTTTGTGAAGACTGCCTCAGAAATTGCCAAGCTAGAGATAGTTGTGCCTGATAAGTTTCATTTCATGTGAGAACTCATTAGTCCATTTGAGCCTGTTGTTTCTGTTTGTTACTGTTGTCTCTTTTTTCACTATTCGTTCATTCTACTGACGATCTTTCATAAACAACTTCTCTACCTACTTTATCATTCCTGGACTTACACTGAATTTTTTGTCGTTGTTGTTGAATCTTCACTAAAATCTTGCAAGTTATTGTTATTACAGAAACATTTGGTCAATTATTGAAAAAGAACATGATTACTCCTTTGTTGCAAAAAAATATAATAGTTGTGGTCAACAATGTCTAGTTGTTTTGTGATGTTACAATTCCTCCAATAAACTATGCAATTGCTCAAATAAACAATGGCTTTGAAAGTGGCATAGGTCAGACCAATTTGACCAAATCATGTCATGTCATGTCTCTTTGTATATATAGTTGTGGAGTACCTCAAATTCGGGTAATCAACTATAATCTAAATTCTAAAAATAATCAAACTCTTTTTCGATTCGTATTATTTGTCTTTTAAAGCTTTTGCTTAATCATGAGAGTATTCATCTACCTACTAATCAACGATCGGATGGATAATATAAATATGTTTTCGATACATAGTATAAGAATCTTTTGTCTTCTAATTTATATAATGTAAAATCAAAAGTCAAGCAGAGCACTAAGTAAACCTTCTGTACGAAAAATTACTAAACTTTAAATAAAATGATATACTTTGAACTCATAATTTCTTGAAATTTCTAATCATTTAGTTGTAAGAACCTAATATGTTCTATTTTTTTTTTAAATACTAAGCAAATTTTGGTATATCTAATTATTTGGCCAGATTCAATCATTATTATATATAATAACATAATTTGCATTAAAAAATTTAGGAAAAAAAGGAAAAA</genome_strand>
        <mrna_strand>ATTTTGCAGAAATGGGATCTTCTGAAGGTCGAAGAGCAACTTTAATGGTGTACAGAAATTTACTGAAAGCAGTGAAAAAACATATAGGGAAGGAAGAACACAAATCTCATTTTACTGATTTCAGCAGGGAAGAATTCAAGAAGAACATAAATCTGGAATACTCAAAAGACTCTTCTTTTATTCAGCAAAGAATTAATCTTGCTCAAAATTATACTTATCTTCTCAATAGTATCCATCATCATAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGCTATTTTCTTACAACATTGCAGTGGATAGATCAAATGAGATGACAAAAGTGCTGGGCAAATCTGCTGCAAGTGTGGGTCTACGCCTTCCTGATGTTTATCAGCATTAAAAGTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGCATCACCGAGTCATATATACACATTTGCTCAATGTACGCGTTGTTTGCATTACTGGTATCATTTCGAAGGTGGTTTTAGATGATTCAACAAAACTGGAAGCTGATATCACAGATATCTCCTAGACCAACTTTCATTCATATCTCCTTAGGATAACAATTTCGCGGATCTGTCCTATGTTGGACAGAATGTTTTTGGTTCGATGAACACCAAACCAGGAAAGTCAATCAGAAAAATGAAGAATTCTCCGCGTTTGTGAAGACTGCCTCAGAAATTGCCAAGCTAGAGATAGTTGTGCCTGATAAGTTTCATTTCATGTGAGAACTCATTAGTCCATTTGAGCCTGTTGTTTCTGTTTGTTACTGTTGTCTCTTTTTTCACTATTCGTTCATTCTACTGACGATCTTTCATAAACAACTTCTCTACCTACTTTATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E247999" ref_strand="+" ref_description="SGN-E247999 [cLEF-47-O17]">
      <seq>ttttgcagaaatgggatcttctgaaggtcgaagagcaactgtaatggtgtacagaaatttactgaaagcagtgaaaaaacatatagggaaggaagaacacaaatctcattttactgatttcagcagggaagaattcaagaagaacataaatctggaatactcaaaagactcttcttttattcagcaaagaattaatcttgctcaaaattatacttatcttctcaatagtatccatcatcataaggacttgctattttcttacaacattgcagtggatagatcaaatgagatgacaaaagtgctgggcaaatctgctgcaagtgtgggtctacgccttcctgatgtttatcagcattaaaagttgcatatgcatcaccgagtcatatatacacatttgctcaatgtacgcgttgtttgcattactggtatcatttcgaaggtggttttagatgattcaacaaaactggaagctgatatcacagatatctcctagaccaactttcattcatatctccttaggataacaatttcgcggatctgtcctatgttggacagaatgtttttggttcgatgaacaccaaaccaagaaagtcaatcagaaaaatgaagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="92134" stop="88650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91834" g_stop="91591" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91590" i_stop="90067" i_length="1524">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90066" g_stop="89947" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="364" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89946" i_stop="89198" i_length="749">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89197" g_stop="88950" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="612" r_length="248" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E247999" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91834" e_stop="91591"/>
          <exon e_start="90066" e_stop="89947"/>
          <exon e_start="89197" e_stop="88950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCAGAAATGGGATCTTCTGAAGGTCGAAGAGCAACTTTAATGGTGTACAGAAATTTACTGAAAGCAGTGAAAAAACATATAGGGAAGGAAGAACACAAATCTCATTTTACTGATTTCAGCAGGGAAGAATTCAAGAAGAACATAAATCTGGAATACTCAAAAGACTCTTCTTTTATTCAGCAAAGAATTAATCTTGCTCAAAATTATACTTATCTTCTCAATAGTATCCATCATCATAAGGTACCTTCATCTCTTTAATTAATTATCCCCGATTTTTGTTAAGTTGTAGCCCCTCTTTTTCTTGTTACCTGTTGTATTGTATTGTTATTTTAAGTACTATGTTTGTTTTGGTTGTTCTGAAAGATTTCATTTTTATGTATAATTACTTATTTGGTGTGGTTTCATCTGGTGGCAGATTTTGGATTTTCACTAATGAGTTCAAGCTATGAAAGCCGAAAGTTGTTTAACATTTGTTGTATATACATGTATAAACAGTGTAATCCTCAGTCTTACCTAGCTCCGCCCCTATATTTGTGTCGTTATATTATTTGGAAGGGAAGCTTTGTGTAACTGGTAAAATTGTTGTCATGTGATTAGGATGTTATAGTTTGAGTGTGGAAACAACCTCTTGCGGAAATGTGGTAAGATTGCATACAATAGTCCTTCCCGGACTCCATTCATAGCGGAACCTTTTGGTTCTTGACTAAAATGAAATGTATATAGTTAGTTATAACTCGTTATTATAGTATTAGTAGTGGGAAAATATTTAACAACATATTCAGTATAGTTTCACAAAGTGGGGAAGTAGTGTTAGTAATGGAAGAATATATGAAAACAATTGTTACAAAGTAATAAAAAGTTAGTTTGAGAGTCATTTTAGAAGTGTTACATAAATTTGGACATGAGAAGTATGCATATGAAATGTCTAGTTTGTTTATAATGTTTGAATTTACTTAGTTAAGGCATGTAGCCTAGTGAATTGTGTGTATCATAGAAGAGAGTGAGGACAACAGTGTTATGTAAATTGAATGTTTCATATCTAGTTGGTTTGTAATGTTTTAATTTACTTGGTTAAGGCGTATAGCCTAGTGAATTTTAAGTATCACAGAAGGTAGTGAGGATAACAATGTTATGTGGATTGAATGTTTAGCCTTTAAGGTCCTATGCACCTACAGTATTAGAGCTCACAAAAATGTCGATGTCAAGATGTATGTGTAATCACACAGTATCAGGTAAGATTATAAGTCATCACATTCAGTAGAGAGTGGAAGTGGCACAGTGTAGAATAAAATAAGAAGTCACTTGAGATAGTGGTGCAATATTATGATAACTGGAGATGCTACAAGGGAATGAGGTAGGCTGAAAATAATATGGAGGAAAATTCTCATTAGACGTACAATTTCTTGGAATCAATGTGGATTTTGTTTAGGATATAAAGGGTTACATAGAGTCTGTACCAATTGATTAGATCAAGGTTTTGTTATTGTGTCATTGTTAACATTTTACATTCGATCATATTACGGAAGATTTTTTTTCTTCTGATAAGCCTAATGTATAGCTGTAACTAGTCGTCTTTTCCTTATTACTTGACCATATGTTGAAACAATTTAAAGGGTGTCATGGGAAGTCTTTCTTTCTCAACTATAACATTTTTTGTGTGGTAAACTCTCTCCGCGATCATGATTCTTTGGCTCTTACGTTCTTGTTATCTTGAATTATGATAATAATTACATCTTACAAATGTGGCTTTCTTTGTTTTTGCAGGACTTGCTATTTTCTTACAACATTGCAGTGGATAGATCAAATGAGATGACAAAAGTGCTGGGCAAATCTGCTGCAAGTGTGGGTCTACGCCTTCCTGATGTTTATCAGCATTAAAAGTTGGTAGGTTTTCACTGCTTCCTTTCCATTTGCTTGATTATGTGACTTTGTGGTAAACGATGGATCCATTTAAGTTGTGTTGTTTATGGTCCAAAAATTGCCATGTCATAGCACGTTAAGCTTGGAAAGTCTGTATGTCTAAGAAATGAAAGAACCAATGGAAATGACAGAGCTAACAAGCTTCATGTTAGCATGTTACTCAAATTTATATTTTTTCAACTTCTTAATGGATGTTTCCTTTCTAGCAATTCGGATAGGATTTAAATATACTTTTTTTCTTTGTTGATGAATAGTTTTTCCATGTGGAAAGTAACCTCATTGCTGCAATGGCTAATTGGATTCAGGGCTCAGATCATTAATTGGCTCATCTTGATAGAATTTAAGATTTCGAAAGCTGCATTACTCACTGCCTTTCATCTTTTACTTAAGTGGTTGTATTGGACGTGAAATTGTCTAATCCAGGTCAAACAACTGTAATTGATGGAGTTGTAGCTAGAAATACATCTATGTAGGATTAGGTCCGGGTTGGTGGTGGCTCCTGTGTTGCTATTTTCGGGTTGTTGATGAAGATATGCATCTAAGATGTTACTGGACATTGTAGCGGCTCTGATTTTGTCGAAAACCTGATGTACTTTTATATGAATGAGTCGGATTAATTTTTGTGGAAATATGAATGGTTCCATAAAATTTTTAACATTTACTACTTGTCTGCAAAGTTTTTGATCCATTTCCACATTCTTGCTTGTTTGCAGCATATGCATCACCGAGTCATATATACACATTTGCTCAATGTACGCGTTGTTTGCATTACTGGTATCATTTCGAAGGTGGTTTTAGATGATTCAACAAAACTGGAAGCTGATATCACAGATATCTCCTAGACCAACTTTCATTCATATCTCCTTAGGATAACAATTTCGCGGATCTGTCCTATGTTGGACAGAATGTTTTTGGTTCGATGAACACCAAACCAGGAAAGTCAATCAGAAAAATGAAGAAT</genome_strand>
        <mrna_strand>TTTTGCAGAAATGGGATCTTCTGAAGGTCGAAGAGCAACTGTAATGGTGTACAGAAATTTACTGAAAGCAGTGAAAAAACATATAGGGAAGGAAGAACACAAATCTCATTTTACTGATTTCAGCAGGGAAGAATTCAAGAAGAACATAAATCTGGAATACTCAAAAGACTCTTCTTTTATTCAGCAAAGAATTAATCTTGCTCAAAATTATACTTATCTTCTCAATAGTATCCATCATCATAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGCTATTTTCTTACAACATTGCAGTGGATAGATCAAATGAGATGACAAAAGTGCTGGGCAAATCTGCTGCAAGTGTGGGTCTACGCCTTCCTGATGTTTATCAGCATTAAAAGTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGCATCACCGAGTCATATATACACATTTGCTCAATGTACGCGTTGTTTGCATTACTGGTATCATTTCGAAGGTGGTTTTAGATGATTCAACAAAACTGGAAGCTGATATCACAGATATCTCCTAGACCAACTTTCATTCATATCTCCTTAGGATAACAATTTCGCGGATCTGTCCTATGTTGGACAGAATGTTTTTGGTTCGATGAACACCAAACCAAGAAAGTCAATCAGAAAAATGAAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E246668" ref_strand="+" ref_description="SGN-E246668 [cLEF-45-C4]">
      <seq>ttttgcagaaatgggatcttctgaaggtcgaagagcaactttaatggtgtacagaaatttactgaaagcagtgaaaaaacatatagggaaggaagaacacaaatctcattttactgatttcagcagggaagaattcaagaagaacataaatctggaatactcaaaagactcttcttttattcagcaaagaattaatcttgctcaaaattatacttatcttctcaatagtatccatcatcataaggacttgctattttcttacaacattgcagtggatagatcaaatgagatgacaaaagtgctgggcaaatctgctgcaagtgtgggtctacgccttcctgatgtttatcagcattaaaagttgcatatgcatcaccgagtcatatatacacatttgctcaatgtacgcgttgtttgcattactggtatcatttcgaaggtggttttagatgattcaacaaaactggaagctgatatcacagatatctcctagaccaactttcattcatatctccttaggataacaatttcgcggatctgtcctatgttggacagaatgtttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="92134" stop="88697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91834" g_stop="91591" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91590" i_stop="90067" i_length="1524">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90066" g_stop="89947" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="364" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89946" i_stop="89198" i_length="749">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89197" g_stop="88997" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="565" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E246668" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91834" e_stop="91591"/>
          <exon e_start="90066" e_stop="89947"/>
          <exon e_start="89197" e_stop="88997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCAGAAATGGGATCTTCTGAAGGTCGAAGAGCAACTTTAATGGTGTACAGAAATTTACTGAAAGCAGTGAAAAAACATATAGGGAAGGAAGAACACAAATCTCATTTTACTGATTTCAGCAGGGAAGAATTCAAGAAGAACATAAATCTGGAATACTCAAAAGACTCTTCTTTTATTCAGCAAAGAATTAATCTTGCTCAAAATTATACTTATCTTCTCAATAGTATCCATCATCATAAGGTACCTTCATCTCTTTAATTAATTATCCCCGATTTTTGTTAAGTTGTAGCCCCTCTTTTTCTTGTTACCTGTTGTATTGTATTGTTATTTTAAGTACTATGTTTGTTTTGGTTGTTCTGAAAGATTTCATTTTTATGTATAATTACTTATTTGGTGTGGTTTCATCTGGTGGCAGATTTTGGATTTTCACTAATGAGTTCAAGCTATGAAAGCCGAAAGTTGTTTAACATTTGTTGTATATACATGTATAAACAGTGTAATCCTCAGTCTTACCTAGCTCCGCCCCTATATTTGTGTCGTTATATTATTTGGAAGGGAAGCTTTGTGTAACTGGTAAAATTGTTGTCATGTGATTAGGATGTTATAGTTTGAGTGTGGAAACAACCTCTTGCGGAAATGTGGTAAGATTGCATACAATAGTCCTTCCCGGACTCCATTCATAGCGGAACCTTTTGGTTCTTGACTAAAATGAAATGTATATAGTTAGTTATAACTCGTTATTATAGTATTAGTAGTGGGAAAATATTTAACAACATATTCAGTATAGTTTCACAAAGTGGGGAAGTAGTGTTAGTAATGGAAGAATATATGAAAACAATTGTTACAAAGTAATAAAAAGTTAGTTTGAGAGTCATTTTAGAAGTGTTACATAAATTTGGACATGAGAAGTATGCATATGAAATGTCTAGTTTGTTTATAATGTTTGAATTTACTTAGTTAAGGCATGTAGCCTAGTGAATTGTGTGTATCATAGAAGAGAGTGAGGACAACAGTGTTATGTAAATTGAATGTTTCATATCTAGTTGGTTTGTAATGTTTTAATTTACTTGGTTAAGGCGTATAGCCTAGTGAATTTTAAGTATCACAGAAGGTAGTGAGGATAACAATGTTATGTGGATTGAATGTTTAGCCTTTAAGGTCCTATGCACCTACAGTATTAGAGCTCACAAAAATGTCGATGTCAAGATGTATGTGTAATCACACAGTATCAGGTAAGATTATAAGTCATCACATTCAGTAGAGAGTGGAAGTGGCACAGTGTAGAATAAAATAAGAAGTCACTTGAGATAGTGGTGCAATATTATGATAACTGGAGATGCTACAAGGGAATGAGGTAGGCTGAAAATAATATGGAGGAAAATTCTCATTAGACGTACAATTTCTTGGAATCAATGTGGATTTTGTTTAGGATATAAAGGGTTACATAGAGTCTGTACCAATTGATTAGATCAAGGTTTTGTTATTGTGTCATTGTTAACATTTTACATTCGATCATATTACGGAAGATTTTTTTTCTTCTGATAAGCCTAATGTATAGCTGTAACTAGTCGTCTTTTCCTTATTACTTGACCATATGTTGAAACAATTTAAAGGGTGTCATGGGAAGTCTTTCTTTCTCAACTATAACATTTTTTGTGTGGTAAACTCTCTCCGCGATCATGATTCTTTGGCTCTTACGTTCTTGTTATCTTGAATTATGATAATAATTACATCTTACAAATGTGGCTTTCTTTGTTTTTGCAGGACTTGCTATTTTCTTACAACATTGCAGTGGATAGATCAAATGAGATGACAAAAGTGCTGGGCAAATCTGCTGCAAGTGTGGGTCTACGCCTTCCTGATGTTTATCAGCATTAAAAGTTGGTAGGTTTTCACTGCTTCCTTTCCATTTGCTTGATTATGTGACTTTGTGGTAAACGATGGATCCATTTAAGTTGTGTTGTTTATGGTCCAAAAATTGCCATGTCATAGCACGTTAAGCTTGGAAAGTCTGTATGTCTAAGAAATGAAAGAACCAATGGAAATGACAGAGCTAACAAGCTTCATGTTAGCATGTTACTCAAATTTATATTTTTTCAACTTCTTAATGGATGTTTCCTTTCTAGCAATTCGGATAGGATTTAAATATACTTTTTTTCTTTGTTGATGAATAGTTTTTCCATGTGGAAAGTAACCTCATTGCTGCAATGGCTAATTGGATTCAGGGCTCAGATCATTAATTGGCTCATCTTGATAGAATTTAAGATTTCGAAAGCTGCATTACTCACTGCCTTTCATCTTTTACTTAAGTGGTTGTATTGGACGTGAAATTGTCTAATCCAGGTCAAACAACTGTAATTGATGGAGTTGTAGCTAGAAATACATCTATGTAGGATTAGGTCCGGGTTGGTGGTGGCTCCTGTGTTGCTATTTTCGGGTTGTTGATGAAGATATGCATCTAAGATGTTACTGGACATTGTAGCGGCTCTGATTTTGTCGAAAACCTGATGTACTTTTATATGAATGAGTCGGATTAATTTTTGTGGAAATATGAATGGTTCCATAAAATTTTTAACATTTACTACTTGTCTGCAAAGTTTTTGATCCATTTCCACATTCTTGCTTGTTTGCAGCATATGCATCACCGAGTCATATATACACATTTGCTCAATGTACGCGTTGTTTGCATTACTGGTATCATTTCGAAGGTGGTTTTAGATGATTCAACAAAACTGGAAGCTGATATCACAGATATCTCCTAGACCAACTTTCATTCATATCTCCTTAGGATAACAATTTCGCGGATCTGTCCTATGTTGGACAGAATGTTTTTG</genome_strand>
        <mrna_strand>TTTTGCAGAAATGGGATCTTCTGAAGGTCGAAGAGCAACTTTAATGGTGTACAGAAATTTACTGAAAGCAGTGAAAAAACATATAGGGAAGGAAGAACACAAATCTCATTTTACTGATTTCAGCAGGGAAGAATTCAAGAAGAACATAAATCTGGAATACTCAAAAGACTCTTCTTTTATTCAGCAAAGAATTAATCTTGCTCAAAATTATACTTATCTTCTCAATAGTATCCATCATCATAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGCTATTTTCTTACAACATTGCAGTGGATAGATCAAATGAGATGACAAAAGTGCTGGGCAAATCTGCTGCAAGTGTGGGTCTACGCCTTCCTGATGTTTATCAGCATTAAAAGTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGCATCACCGAGTCATATATACACATTTGCTCAATGTACGCGTTGTTTGCATTACTGGTATCATTTCGAAGGTGGTTTTAGATGATTCAACAAAACTGGAAGCTGATATCACAGATATCTCCTAGACCAACTTTCATTCATATCTCCTTAGGATAACAATTTCGCGGATCTGTCCTATGTTGGACAGAATGTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E336472" ref_strand="+" ref_description="SGN-E336472 [cTOE-4-F19]">
      <seq>tgtacagaaatttactgaaagcagtgaaaaaacatatagggaaggaagaacacaaatctcattttactgatttcagcagggaagaattcaagaagaacataaatctggaatactcaaaagactcttcttttattcagcaaagaattaatcttgctcaaaattatacttatcttctcaatagtatccatcatcataaggacttgctattttcttacaacattgcagtggatagatcaaatgagatgacaaaagtgctgggcaaatctgctgcaagtgtgggtctacgccttcctgatgtttatcagcattaaaagttgcatatgcatcaccgagtcatatatacacatttgctcaatgtacgcgttgtttgcattactggtatcatttcgaaggtggttttagatgattcaacaaaactggaagctgatatcacagatatctcctagaccaactttcattcatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="92087" stop="88750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91787" g_stop="91591" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91590" i_stop="90067" i_length="1524">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90066" g_stop="89947" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="317" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89946" i_stop="89198" i_length="749">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89197" g_stop="89050" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="465" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E336472" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91787" e_stop="91591"/>
          <exon e_start="90066" e_stop="89947"/>
          <exon e_start="89197" e_stop="89050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTACAGAAATTTACTGAAAGCAGTGAAAAAACATATAGGGAAGGAAGAACACAAATCTCATTTTACTGATTTCAGCAGGGAAGAATTCAAGAAGAACATAAATCTGGAATACTCAAAAGACTCTTCTTTTATTCAGCAAAGAATTAATCTTGCTCAAAATTATACTTATCTTCTCAATAGTATCCATCATCATAAGGTACCTTCATCTCTTTAATTAATTATCCCCGATTTTTGTTAAGTTGTAGCCCCTCTTTTTCTTGTTACCTGTTGTATTGTATTGTTATTTTAAGTACTATGTTTGTTTTGGTTGTTCTGAAAGATTTCATTTTTATGTATAATTACTTATTTGGTGTGGTTTCATCTGGTGGCAGATTTTGGATTTTCACTAATGAGTTCAAGCTATGAAAGCCGAAAGTTGTTTAACATTTGTTGTATATACATGTATAAACAGTGTAATCCTCAGTCTTACCTAGCTCCGCCCCTATATTTGTGTCGTTATATTATTTGGAAGGGAAGCTTTGTGTAACTGGTAAAATTGTTGTCATGTGATTAGGATGTTATAGTTTGAGTGTGGAAACAACCTCTTGCGGAAATGTGGTAAGATTGCATACAATAGTCCTTCCCGGACTCCATTCATAGCGGAACCTTTTGGTTCTTGACTAAAATGAAATGTATATAGTTAGTTATAACTCGTTATTATAGTATTAGTAGTGGGAAAATATTTAACAACATATTCAGTATAGTTTCACAAAGTGGGGAAGTAGTGTTAGTAATGGAAGAATATATGAAAACAATTGTTACAAAGTAATAAAAAGTTAGTTTGAGAGTCATTTTAGAAGTGTTACATAAATTTGGACATGAGAAGTATGCATATGAAATGTCTAGTTTGTTTATAATGTTTGAATTTACTTAGTTAAGGCATGTAGCCTAGTGAATTGTGTGTATCATAGAAGAGAGTGAGGACAACAGTGTTATGTAAATTGAATGTTTCATATCTAGTTGGTTTGTAATGTTTTAATTTACTTGGTTAAGGCGTATAGCCTAGTGAATTTTAAGTATCACAGAAGGTAGTGAGGATAACAATGTTATGTGGATTGAATGTTTAGCCTTTAAGGTCCTATGCACCTACAGTATTAGAGCTCACAAAAATGTCGATGTCAAGATGTATGTGTAATCACACAGTATCAGGTAAGATTATAAGTCATCACATTCAGTAGAGAGTGGAAGTGGCACAGTGTAGAATAAAATAAGAAGTCACTTGAGATAGTGGTGCAATATTATGATAACTGGAGATGCTACAAGGGAATGAGGTAGGCTGAAAATAATATGGAGGAAAATTCTCATTAGACGTACAATTTCTTGGAATCAATGTGGATTTTGTTTAGGATATAAAGGGTTACATAGAGTCTGTACCAATTGATTAGATCAAGGTTTTGTTATTGTGTCATTGTTAACATTTTACATTCGATCATATTACGGAAGATTTTTTTTCTTCTGATAAGCCTAATGTATAGCTGTAACTAGTCGTCTTTTCCTTATTACTTGACCATATGTTGAAACAATTTAAAGGGTGTCATGGGAAGTCTTTCTTTCTCAACTATAACATTTTTTGTGTGGTAAACTCTCTCCGCGATCATGATTCTTTGGCTCTTACGTTCTTGTTATCTTGAATTATGATAATAATTACATCTTACAAATGTGGCTTTCTTTGTTTTTGCAGGACTTGCTATTTTCTTACAACATTGCAGTGGATAGATCAAATGAGATGACAAAAGTGCTGGGCAAATCTGCTGCAAGTGTGGGTCTACGCCTTCCTGATGTTTATCAGCATTAAAAGTTGGTAGGTTTTCACTGCTTCCTTTCCATTTGCTTGATTATGTGACTTTGTGGTAAACGATGGATCCATTTAAGTTGTGTTGTTTATGGTCCAAAAATTGCCATGTCATAGCACGTTAAGCTTGGAAAGTCTGTATGTCTAAGAAATGAAAGAACCAATGGAAATGACAGAGCTAACAAGCTTCATGTTAGCATGTTACTCAAATTTATATTTTTTCAACTTCTTAATGGATGTTTCCTTTCTAGCAATTCGGATAGGATTTAAATATACTTTTTTTCTTTGTTGATGAATAGTTTTTCCATGTGGAAAGTAACCTCATTGCTGCAATGGCTAATTGGATTCAGGGCTCAGATCATTAATTGGCTCATCTTGATAGAATTTAAGATTTCGAAAGCTGCATTACTCACTGCCTTTCATCTTTTACTTAAGTGGTTGTATTGGACGTGAAATTGTCTAATCCAGGTCAAACAACTGTAATTGATGGAGTTGTAGCTAGAAATACATCTATGTAGGATTAGGTCCGGGTTGGTGGTGGCTCCTGTGTTGCTATTTTCGGGTTGTTGATGAAGATATGCATCTAAGATGTTACTGGACATTGTAGCGGCTCTGATTTTGTCGAAAACCTGATGTACTTTTATATGAATGAGTCGGATTAATTTTTGTGGAAATATGAATGGTTCCATAAAATTTTTAACATTTACTACTTGTCTGCAAAGTTTTTGATCCATTTCCACATTCTTGCTTGTTTGCAGCATATGCATCACCGAGTCATATATACACATTTGCTCAATGTACGCGTTGTTTGCATTACTGGTATCATTTCGAAGGTGGTTTTAGATGATTCAACAAAACTGGAAGCTGATATCACAGATATCTCCTAGACCAACTTTCATTCATATC</genome_strand>
        <mrna_strand>TGTACAGAAATTTACTGAAAGCAGTGAAAAAACATATAGGGAAGGAAGAACACAAATCTCATTTTACTGATTTCAGCAGGGAAGAATTCAAGAAGAACATAAATCTGGAATACTCAAAAGACTCTTCTTTTATTCAGCAAAGAATTAATCTTGCTCAAAATTATACTTATCTTCTCAATAGTATCCATCATCATAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGCTATTTTCTTACAACATTGCAGTGGATAGATCAAATGAGATGACAAAAGTGCTGGGCAAATCTGCTGCAAGTGTGGGTCTACGCCTTCCTGATGTTTATCAGCATTAAAAGTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGCATCACCGAGTCATATATACACATTTGCTCAATGTACGCGTTGTTTGCATTACTGGTATCATTTCGAAGGTGGTTTTAGATGATTCAACAAAACTGGAAGCTGATATCACAGATATCTCCTAGACCAACTTTCATTCATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E539178" ref_strand="+" ref_description="SGN-E539178 [TUS-58-M22]">
      <seq>ttttttttttgaatcaagaaacaatatanttgtgcaagagatgttaccaatagntctttacaagaacaaaatcncatctttaaaacaatgaaacctattcctatcgcgcacaactantctctctcttgacaatttctgaaattactttgaaagcctcatgacaatcttcacaaacacgaagattcttcattattctgatcgtttctcctggctttatgttcatcaaaccgtaaacaagagccaatttttcactatgtcgatacacatatttttctttctcattttcttctatgtcaagcagaaccactgaagtatttggtacataccctttggacttcatttgttccaacagttcatcccatctcttaaagatctgctcagcctgaggatggttatcatctccagccacaaattcgtgcgttgttcctgctatagtaattgaactccaacctggagttttctttactccgcgatccttcatcaacttcctcaccattgctgcatcttcccaacgcttagcttctgcatagatgttagacatgataatgtagtatccatcgttaagagggtctaggacacctagttgcctgatagcttcctcagccatttttacgtccttttgagttctacatccaccaagaaaagaaccccatacaacagcatttggttttataggcatgcttgtgatgagctcatacgcgtcttcaagaagtcctgctcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="92173" stop="93487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92470" g_stop="93187" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="722" r_length="722" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-E539178" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92470" e_stop="93187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCATTTGAATCAAGAAACAATATA-TTGTGCAAGAGATGTTACCAATAG-TCTTTACAAGAACAAAATC-CATCTTTAAAACAATGAAACCTATTCCTATCGCGCACAACTA-TCTCTCTCTTGACAATTTCTGAAATTACTTTGAAAGCCTCATGACAATCTTCACAAACACGAAGATTCTTCATTATTCTGATCGTTTCTCCTGGCTTTATGTTCATCAAACCGTAAACAAGAGCCAATTTTTCACTATGTCGATACACATATTTTTCTTTCTCATTTTCTTCTATGTCAAGCAGAACCACTGAAGTATTTGGTACATACCCTTTGGACTTCATTTGTTCCAACAGTTCATCCCATCTCTTAAAGATCTGCTCAGCCTGAGGATGGTTATCATCTCCAGCCACAAATTCGTGCGTTGTTCCTGCTATAGTAATTGAACTCCAACCTGGAGTTTTCTTTACTCCGCGATCCTTCATCAACTTCCTCACCATTGCTGCATCTTCCCAACGCTTAGCTTCTGCATAGATGTTAGACATGATAATGTAGTATCCATCGTTAAGAGGGTCTAGGACACCTAGTTGCCTGATAGCTTCCTCAGCCATTTTTACGTCCTTTTGAGTTCTACATCCACCAAGAAAAGAACCCCATACAACAGCATTTGGTTTTATAGGCATGCTTGTGATGAGCTCATACGCGTCTTCAAGAAGTCCTGCTCGA</genome_strand>
        <mrna_strand>TTTTTTTTTTGAATCAAGAAACAATATANTTGTGCAAGAGATGTTACCAATAGNTCTTTACAAGAACAAAATCNCATCTTTAAAACAATGAAACCTATTCCTATCGCGCACAACTANTCTCTCTCTTGACAATTTCTGAAATTACTTTGAAAGCCTCATGACAATCTTCACAAACACGAAGATTCTTCATTATTCTGATCGTTTCTCCTGGCTTTATGTTCATCAAACCGTAAACAAGAGCCAATTTTTCACTATGTCGATACACATATTTTTCTTTCTCATTTTCTTCTATGTCAAGCAGAACCACTGAAGTATTTGGTACATACCCTTTGGACTTCATTTGTTCCAACAGTTCATCCCATCTCTTAAAGATCTGCTCAGCCTGAGGATGGTTATCATCTCCAGCCACAAATTCGTGCGTTGTTCCTGCTATAGTAATTGAACTCCAACCTGGAGTTTTCTTTACTCCGCGATCCTTCATCAACTTCCTCACCATTGCTGCATCTTCCCAACGCTTAGCTTCTGCATAGATGTTAGACATGATAATGTAGTATCCATCGTTAAGAGGGTCTAGGACACCTAGTTGCCTGATAGCTTCCTCAGCCATTTTTACGTCCTTTTGAGTTCTACATCCACCAAGAAAAGAACCCCATACAACAGCATTTGGTTTTATAGGCATGCTTGTGATGAGCTCATACGCGTCTTCAAGAAGTCCTGCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E283722" ref_strand="-" ref_description="SGN-E283722 [cLES-1-E23]">
      <seq>aatattaattacagtcgtctcgctgtggatgatgatgacgactattatggatattctggcaagcgagctgaccctagatttgattattcaccaaaatcgttagatagaatcccctggaagtccattgcccttgctctttttctgctctttctgggatgtttgcttctcttactatcctacttcatcttatctggtcatatggaaggagagagttcccaggcatatggtctccttggactcggaatcctcacttttctccctggtttctatgagacgcgtattgcatattactcttggagaggtgctcaaggttatcgatttactgcaatccctgactattgaggttttcacatttcatgtaaacgctaaatgtagttactagcttctgtaatgagctttatgatagtttttattgtaacacacattgccctatacatttcgaataacatctgaatgtagttactggttttcataatgagttcgagtttgatgagtttgcagaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="96173" stop="16816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95873" g_stop="95612" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95611" i_stop="95057" i_length="555">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95056" g_stop="94816" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="503" r_length="241" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94815" i_stop="94466" i_length="350">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94465" g_stop="94448" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="521" r_length="18" r_score="0.667"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94447" i_stop="93092" i_length="1356">
            <donor d_prob="0.884" d_score="0.00"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93091" g_stop="93083" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="530" r_length="9" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E283722" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283722" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="95873" e_stop="95612"/>
          <exon e_start="95056" e_stop="94816"/>
          <exon e_start="94465" e_stop="94448"/>
          <exon e_start="93091" e_stop="93083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTAATTACAGTCGTCTCGCTGTGGATGATGATGACGACTATTATGGATATTCTGGCAAGCGAGCTGACCCTAGATTTGATTATTCACCAAAATCGTTAGATAGAATCCCCTGGAAGTCCATTGCCCTTGCTCTTTTTCTGCTCTTTCTGGGATGTTTGCTTCTCTTACTATCCTACTTCATCTTATCTGGTCATATGGAAGGAGAGAGTTCCCAGGCATATGGTCTCCTTGGACTCGGAATCCTCACTTTTCTCCCTGGTAAGTCAAAAACATACATCAATTTATACTGCTTTGGATGCTTAAGCTGCAAAACTTTTGTCCATTATTGTTCAAGATATCCTCGAGGAGAGTGTAGTAATTCATTAAGTCCAGAATCAATTTGCGGCTATGCCATTTATTTGACTGCGTGATTATCAGTTTGTGTTAACAAGGTAACTTTACATTGAATTTGCAGCACAATAAATAGGTGAGATAGCAAATGGCTGAGCTACTTGTTACCGTATCTGTCCTCTTTGTAGTTGCTATAAGCACCATATCTAGGTGATTGTAGATCTGCACTTGAAAATGGTCTTCTTTAATCGATCTCTTGGGACTTGCATTACATGTTGTAAACTTCTGGAATAGGCAATAGGCAATAGATTCTACTTCAAGTCATATTTTCTCTGTTTTGTTTAGACATTCTTGAGTCTAATACTGCCTATGCCGCTGGTTTCATATTGAGTTCTTCATTCAAGTTTCATATTCATTTTTACATTAGTAAGTTAATTAGGCAACTTCCAATTATCAACGTTAACTTTGGTAATTACTCAACAGGTTTCTATGAGACGCGTATTGCATATTACTCTTGGAGAGGTGCTCAAGGTTATCGATTTACTGCAATCCCTGACTATTGAGGTTTTCACATTTCATGTAAACGCTAAATGTAGTTACTAGCTTCTGTAATGAGCTTTATGATAGTTTTTATTGTAACACACATTGCCCTATACATTTCGAATAACATCTGAATGTAGTTACTGGTTTTCATAATGAGTTCGAGTTTGATGAGTTTGCAGCATTCATTTTGTCCCAGCGTGTCAATTCATTTTTTTTCTTTACATAATCTTTGTATCGTCGACGCCTCTATGTGTTGTATTCGATACATCAGATTCCACAGTATGAAGGACTAACTTCAGGAAGCATGAAGCAGTTTACGCCCTGTGGTTATTGATTTTTCGATAAGCATACTATATGGTTTGATTCTTTTAGAACTTCCAATTGGAGAGAGGATGTTTCAAACTTGATTTATATATAAAGTAAAAATCATTGGATAAGCTGTGGTGAATGGTGATGAGGAATTGCCTCGGGGATTCTTGTGCCTATTCTTCACGAAGTTTCATTTAGACACTTCAAAAATAATGCAAGTAGCCAAACAACAACAAAAAGGTACTACTATATAGGCTTTTATGCTTCATTAGCAGCTAACATTGAAGCTAAGGCAATGCTGCATTCTGTTTGCTTAGCATCTCCACTTCACTCCCCAAAACTTAAAGACTCCATTAATGGCACTTCAGAAATCCCCACTACTACCCTTCACCATTTCACTTCTCCATTCGAGCTCAAACAAGCTGTTGCCTTTCTCATCAAAACCAATAAACCTCTTTCACTACTCCCACTTTCTCGGGTAGCTTCCATTTGCGCACTTACTCCCGATTTCCCCTTTGCTCAACAGATTTTCAGCTCTGTTGATCAGCAAGAAGTTGCTATATGGAATAGCTGTTTGAGAAATCTTGCTGAAGGTAGTTCCTTAATTGATGCAATTTTCTTGTTTCAGCAAATGCGTAGTTACAATGTGAGTCTTGACTGTTTCACTTGCTCGTTTGTTCTTAAGGCTTGTGTGGGGTTACGGGATCTTTTACGTGGGAGAATTGTTCATGGGTATATAGAGAAACTTGGGTTTCAATCGAATTTAGTTTTGCTAAATGCACTTCTTCATTTATATGCTACTTGTGGAGCAACGGATGATGCCATCCTTCTGTTCGATAAAATGCCTCAACGAGATGTTGTGTCTTGGAATATAATGATTACCCAATTATCAAAGAAGGGTGATGTTGATGGGGCGTTTGACTTGTTTGGGAAAATGCCTGAGAGAAATTTAAGGTCTTGGACAGCCATGATTACTGGTTTTGTTCATTGCGTGAAGGCTAAAGAGGCTATTAGACTTTTCGTAGAAATGGAAGAAACGGGGTTGAGGGCGAATGAGGTAACTGTAGTGGCTGTTCTTGCAGCTTGTGCTGATTTGGGTGCACTTGACTTGGGTAGGAGGATTCATGAGTATTCAAATAAGAGCGGGTTCAGGAGAAACGTTCACATTTGTAACACTCTGATTGACATGTACATTAAGTGTGGCTGCTTAGAGGCTGCAAAAGCTGTTTTCGATGAAATGAAGGAACCAACAATTGTATCATGGTCAGCCATGATCCAGGGTTTAGCTATCCATGGACACGGGGATGAAGCCTTAGAACTCTTTAACGAGATGATCAAAATGGGAATGAAGCCTAACGAGGTCACGTTTCTTGGAATCTTGCATGCTTGTAGCCATATGGGGTTGATCAATAAGGGGCGAGAATTCTTTACTAGCATGAGTAGAGACTACAACATTTCTCCTCAAATCGAGCATTATGGTTGTATGGTTGATCTCTTGAGTCGAGCAGGACTTCTTGAAGACGCGTATGAGCTCATCACAAGCATGCCTATAAAACCAAATGCTGTTGTATGGGGTTCTTTTCTTGGTGGATGTAGAACTCAAAA</genome_strand>
        <mrna_strand>AATATTAATTACAGTCGTCTCGCTGTGGATGATGATGACGACTATTATGGATATTCTGGCAAGCGAGCTGACCCTAGATTTGATTATTCACCAAAATCGTTAGATAGAATCCCCTGGAAGTCCATTGCCCTTGCTCTTTTTCTGCTCTTTCTGGGATGTTTGCTTCTCTTACTATCCTACTTCATCTTATCTGGTCATATGGAAGGAGAGAGTTCCCAGGCATATGGTCTCCTTGGACTCGGAATCCTCACTTTTCTCCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTATGAGACGCGTATTGCATATTACTCTTGGAGAGGTGCTCAAGGTTATCGATTTACTGCAATCCCTGACTATTGAGGTTTTCACATTTCATGTAAACGCTAAATGTAGTTACTAGCTTCTGTAATGAGCTTTATGATAGTTTTTATTGTAACACACATTGCCCTATACATTTCGAATAACATCTGAATGTAGTTACTGGTTTTCATAATGAGTTCGAGTTTGATGAGTTTGCAGAA..............................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E548178" ref_strand="+" ref_description="SGN-E548178 [TUS-58-M22]">
      <seq>tttcaatcgaatttagttttgctaaatgcacttcttcatttatatgctacttgtggagcaacggatgatgccatccttctgttcgataaaatgcctcaacgagatgttgtgtcttggaatataatgattacccaattatcaaagaagggtgatgttgatggggcgtttgacttgtttgggaaaatgcctgagagaaatttaaggtcttggacagccatgattactggttttgttcattgcgtgaaggctaaagaggctattagacttttcgtagaaatggaagaaacggggttgagggcgaatgaggtaactgtagtggctgttcttgcagcttgtgctgatttgggtgcacttgacttgggtaggaggattcatgagtattcaaataagagcgggttcaggagaaacgttcacatttgtaacactctgattgacatgtacattaagtgtggctgcttagaggctgcaaaagctgttttcgatgaaatgaaggaaccaacaattgtatcatggtcagccatgatccagggtttagctatccatggacacggggatgaagccttagaactctttaacgagatgatcaaaatgggaatgaagcctaacgaggtcacgtttcttggaatcttgcatgcttgtagccatatggggttgatcaataaggggcgagaattctttactagcatgagtagagactacaacatttctccctcaatcgagcattatggttgtatggttgatctcttgagtcgagcaggacttcttgaagacgcgtatgagctcatcacaagcatgcctataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="94236" stop="92835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93936" g_stop="93135" g_length="802"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="802" r_length="802" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E548178" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93936" e_stop="93135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATCGAATTTAGTTTTGCTAAATGCACTTCTTCATTTATATGCTACTTGTGGAGCAACGGATGATGCCATCCTTCTGTTCGATAAAATGCCTCAACGAGATGTTGTGTCTTGGAATATAATGATTACCCAATTATCAAAGAAGGGTGATGTTGATGGGGCGTTTGACTTGTTTGGGAAAATGCCTGAGAGAAATTTAAGGTCTTGGACAGCCATGATTACTGGTTTTGTTCATTGCGTGAAGGCTAAAGAGGCTATTAGACTTTTCGTAGAAATGGAAGAAACGGGGTTGAGGGCGAATGAGGTAACTGTAGTGGCTGTTCTTGCAGCTTGTGCTGATTTGGGTGCACTTGACTTGGGTAGGAGGATTCATGAGTATTCAAATAAGAGCGGGTTCAGGAGAAACGTTCACATTTGTAACACTCTGATTGACATGTACATTAAGTGTGGCTGCTTAGAGGCTGCAAAAGCTGTTTTCGATGAAATGAAGGAACCAACAATTGTATCATGGTCAGCCATGATCCAGGGTTTAGCTATCCATGGACACGGGGATGAAGCCTTAGAACTCTTTAACGAGATGATCAAAATGGGAATGAAGCCTAACGAGGTCACGTTTCTTGGAATCTTGCATGCTTGTAGCCATATGGGGTTGATCAATAAGGGGCGAGAATTCTTTACTAGCATGAGTAGAGACTACAACATTTCTCCTCAAATCGAGCATTATGGTTGTATGGTTGATCTCTTGAGTCGAGCAGGACTTCTTGAAGACGCGTATGAGCTCATCACAAGCATGCCTATAA</genome_strand>
        <mrna_strand>TTTCAATCGAATTTAGTTTTGCTAAATGCACTTCTTCATTTATATGCTACTTGTGGAGCAACGGATGATGCCATCCTTCTGTTCGATAAAATGCCTCAACGAGATGTTGTGTCTTGGAATATAATGATTACCCAATTATCAAAGAAGGGTGATGTTGATGGGGCGTTTGACTTGTTTGGGAAAATGCCTGAGAGAAATTTAAGGTCTTGGACAGCCATGATTACTGGTTTTGTTCATTGCGTGAAGGCTAAAGAGGCTATTAGACTTTTCGTAGAAATGGAAGAAACGGGGTTGAGGGCGAATGAGGTAACTGTAGTGGCTGTTCTTGCAGCTTGTGCTGATTTGGGTGCACTTGACTTGGGTAGGAGGATTCATGAGTATTCAAATAAGAGCGGGTTCAGGAGAAACGTTCACATTTGTAACACTCTGATTGACATGTACATTAAGTGTGGCTGCTTAGAGGCTGCAAAAGCTGTTTTCGATGAAATGAAGGAACCAACAATTGTATCATGGTCAGCCATGATCCAGGGTTTAGCTATCCATGGACACGGGGATGAAGCCTTAGAACTCTTTAACGAGATGATCAAAATGGGAATGAAGCCTAACGAGGTCACGTTTCTTGGAATCTTGCATGCTTGTAGCCATATGGGGTTGATCAATAAGGGGCGAGAATTCTTTACTAGCATGAGTAGAGACTACAACATTTCTCCCTCAATCGAGCATTATGGTTGTATGGTTGATCTCTTGAGTCGAGCAGGACTTCTTGAAGACGCGTATGAGCTCATCACAAGCATGCCTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E278271" ref_strand="+" ref_description="SGN-E278271 [cLER-9-L20]">
      <seq>ttcaatcgaatttagttttgctaaatgcacttcttcatttatatgctacttgtggagcaacggatgatgccatccttctgttcgataaaatgcctcaacgagatgttgtgtcttggaatataatgattacccaattatcaaagaagggtgatgttgatggggcgtttgacttgtttgggaaaatgcctgagagaaatttaaggtcttggacagccatgattactggttttgttcattgcgtgaaggctaaagaggctattagacttttcgtagaaatggaagaaacggggttgagggcgaatgaggtaactgtagtggctgttcttgcagcttgtgctgatttgggtgcacttgacttgggtaggaggattcatgagtattcaaataagagcgggttcaggagaaacgttcacatttgtaacactctgattgacatgtacattaagtgtggctgcttaaaggctgcaaaagctgttttcgatgaaatgaaggaaccaacaattgtatcatggtcagccatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="94235" stop="93113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93935" g_stop="93413" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E278271" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93935" e_stop="93413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATCGAATTTAGTTTTGCTAAATGCACTTCTTCATTTATATGCTACTTGTGGAGCAACGGATGATGCCATCCTTCTGTTCGATAAAATGCCTCAACGAGATGTTGTGTCTTGGAATATAATGATTACCCAATTATCAAAGAAGGGTGATGTTGATGGGGCGTTTGACTTGTTTGGGAAAATGCCTGAGAGAAATTTAAGGTCTTGGACAGCCATGATTACTGGTTTTGTTCATTGCGTGAAGGCTAAAGAGGCTATTAGACTTTTCGTAGAAATGGAAGAAACGGGGTTGAGGGCGAATGAGGTAACTGTAGTGGCTGTTCTTGCAGCTTGTGCTGATTTGGGTGCACTTGACTTGGGTAGGAGGATTCATGAGTATTCAAATAAGAGCGGGTTCAGGAGAAACGTTCACATTTGTAACACTCTGATTGACATGTACATTAAGTGTGGCTGCTTAGAGGCTGCAAAAGCTGTTTTCGATGAAATGAAGGAACCAACAATTGTATCATGGTCAGCCATGAT</genome_strand>
        <mrna_strand>TTCAATCGAATTTAGTTTTGCTAAATGCACTTCTTCATTTATATGCTACTTGTGGAGCAACGGATGATGCCATCCTTCTGTTCGATAAAATGCCTCAACGAGATGTTGTGTCTTGGAATATAATGATTACCCAATTATCAAAGAAGGGTGATGTTGATGGGGCGTTTGACTTGTTTGGGAAAATGCCTGAGAGAAATTTAAGGTCTTGGACAGCCATGATTACTGGTTTTGTTCATTGCGTGAAGGCTAAAGAGGCTATTAGACTTTTCGTAGAAATGGAAGAAACGGGGTTGAGGGCGAATGAGGTAACTGTAGTGGCTGTTCTTGCAGCTTGTGCTGATTTGGGTGCACTTGACTTGGGTAGGAGGATTCATGAGTATTCAAATAAGAGCGGGTTCAGGAGAAACGTTCACATTTGTAACACTCTGATTGACATGTACATTAAGTGTGGCTGCTTAAAGGCTGCAAAAGCTGTTTTCGATGAAATGAAGGAACCAACAATTGTATCATGGTCAGCCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E687694" ref_strand="+" ref_description="SGN-E687694 [T3_tus_79_H18]">
      <seq>ctacccttcaccatttcacttctccattcgagctcaaacaagctgttgcctttctcatcaaaaccaataaacctctttcactactcccactttctcgggtagcttccatttgcgcacttactcccgatttcccctttgctcaacagattttcagctctgttgatcagcaagaagttgctatatggaatagctgtttgagaaatcttgctgaaggtagttccttaattgatgcaattttcttgtttcagcaaatgcgtagttacaatgtgagtcttgactgtttcacttgctcgtttgttcttaaggcttgtgtggggttacgggatcttttacgtgggagaattgttcatgggtatatagagaaacttgggtttcaatcgaatttagttttgctaaatgcacttcttcatttatatgctacttgtggagcaacggatgatgccatccttctgttcgataaaatgcctcaacgagatgttgtgtcttggaatataatgattacccaattatcaaagaagggtgatgttgatggggcgttttgacttgtttgggaaaatgcctgagagaaatttaaggtcttggacagccatgattactggttttgttcattgcgtgaaggctaaagaggctattagacttttcgtacaaatggaagaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="94607" stop="93350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94307" g_stop="93650" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E687694" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94307" e_stop="93650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCCTTCACCATTTCACTTCTCCATTCGAGCTCAAACAAGCTGTTGCCTTTCTCATCAAAACCAATAAACCTCTTTCACTACTCCCACTTTCTCGGGTAGCTTCCATTTGCGCACTTACTCCCGATTTCCCCTTTGCTCAACAGATTTTCAGCTCTGTTGATCAGCAAGAAGTTGCTATATGGAATAGCTGTTTGAGAAATCTTGCTGAAGGTAGTTCCTTAATTGATGCAATTTTCTTGTTTCAGCAAATGCGTAGTTACAATGTGAGTCTTGACTGTTTCACTTGCTCGTTTGTTCTTAAGGCTTGTGTGGGGTTACGGGATCTTTTACGTGGGAGAATTGTTCATGGGTATATAGAGAAACTTGGGTTTCAATCGAATTTAGTTTTGCTAAATGCACTTCTTCATTTATATGCTACTTGTGGAGCAACGGATGATGCCATCCTTCTGTTCGATAAAATGCCTCAACGAGATGTTGTGTCTTGGAATATAATGATTACCCAATTATCAAAGAAGGGTGATGTTGATGGGGCG-TTTGACTTGTTTGGGAAAATGCCTGAGAGAAATTTAAGGTCTTGGACAGCCATGATTACTGGTTTTGTTCATTGCGTGAAGGCTAAAGAGGCTATTAGACTTTTCGTAGAAATGGAAGAAAC</genome_strand>
        <mrna_strand>CTACCCTTCACCATTTCACTTCTCCATTCGAGCTCAAACAAGCTGTTGCCTTTCTCATCAAAACCAATAAACCTCTTTCACTACTCCCACTTTCTCGGGTAGCTTCCATTTGCGCACTTACTCCCGATTTCCCCTTTGCTCAACAGATTTTCAGCTCTGTTGATCAGCAAGAAGTTGCTATATGGAATAGCTGTTTGAGAAATCTTGCTGAAGGTAGTTCCTTAATTGATGCAATTTTCTTGTTTCAGCAAATGCGTAGTTACAATGTGAGTCTTGACTGTTTCACTTGCTCGTTTGTTCTTAAGGCTTGTGTGGGGTTACGGGATCTTTTACGTGGGAGAATTGTTCATGGGTATATAGAGAAACTTGGGTTTCAATCGAATTTAGTTTTGCTAAATGCACTTCTTCATTTATATGCTACTTGTGGAGCAACGGATGATGCCATCCTTCTGTTCGATAAAATGCCTCAACGAGATGTTGTGTCTTGGAATATAATGATTACCCAATTATCAAAGAAGGGTGATGTTGATGGGGCGTTTTGACTTGTTTGGGAAAATGCCTGAGAGAAATTTAAGGTCTTGGACAGCCATGATTACTGGTTTTGTTCATTGCGTGAAGGCTAAAGAGGCTATTAGACTTTTCGTACAAATGGAAGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E322927" ref_strand="+" ref_description="SGN-E322927 [cTOB-30-C8]">
      <seq>tacccttcaccatttcacttctccattcgagctcaaacaagctgttgcctttctcatcaaaaccaataaacctctttcactactcccactttctcgggtagcttccatttgcgcacttactcccgatttcccctttgctcaacagaatttcagctctgttgagcagcaagaagatgctatatggaatagctgtttgagaaatcttgctgaaggtaggtccttaattgatgcaattttcttgtttcagcaaatgcgtaggtacaatgtgagtcttgactggttcacttgctcgtttgttcttaaggcttgtgtgggggtacgggatcttttacgtgggagaattgttcatgggtatatagagaaacttggggttcaatcgaatttagttttgctaaatgcacttcttcatttatatggtactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="94606" stop="93585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94306" g_stop="93885" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E322927" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94306" e_stop="93885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCCTTCACCATTTCACTTCTCCATTCGAGCTCAAACAAGCTGTTGCCTTTCTCATCAAAACCAATAAACCTCTTTCACTACTCCCACTTTCTCGGGTAGCTTCCATTTGCGCACTTACTCCCGATTTCCCCTTTGCTCAACAGATTTTCAGCTCTGTTGATCAGCAAGAAGTTGCTATATGGAATAGCTGTTTGAGAAATCTTGCTGAAGGTAGTTCCTTAATTGATGCAATTTTCTTGTTTCAGCAAATGCGTAGTTACAATGTGAGTCTTGACTGTTTCACTTGCTCGTTTGTTCTTAAGGCTTGTGTGGGGTTACGGGATCTTTTACGTGGGAGAATTGTTCATGGGTATATAGAGAAACTTGGGTTTCAATCGAATTTAGTTTTGCTAAATGCACTTCTTCATTTATATGCTACTT</genome_strand>
        <mrna_strand>TACCCTTCACCATTTCACTTCTCCATTCGAGCTCAAACAAGCTGTTGCCTTTCTCATCAAAACCAATAAACCTCTTTCACTACTCCCACTTTCTCGGGTAGCTTCCATTTGCGCACTTACTCCCGATTTCCCCTTTGCTCAACAGAATTTCAGCTCTGTTGAGCAGCAAGAAGATGCTATATGGAATAGCTGTTTGAGAAATCTTGCTGAAGGTAGGTCCTTAATTGATGCAATTTTCTTGTTTCAGCAAATGCGTAGGTACAATGTGAGTCTTGACTGGTTCACTTGCTCGTTTGTTCTTAAGGCTTGTGTGGGGGTACGGGATCTTTTACGTGGGAGAATTGTTCATGGGTATATAGAGAAACTTGGGGTTCAATCGAATTTAGTTTTGCTAAATGCACTTCTTCATTTATATGGTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E732078" ref_strand="+" ref_description="SGN-E732078 [LB01AH05]">
      <seq>atttctcgggtctactgtaatcgtcgccggtcagcttccgtcggtgttccggtcaccttgttaggtgaatttgagctttctttctcatcaagacatctattccaattcaaagactgggaattctagtgtatggcttctaggcggaatattaattacagtcgtctcgctgtggatgatgatgacgactattatggatattctggcaagcgagctgaccctagatttgattattcaccaaaatcgttagatagaatcccctggaagtccattgcccttgctctttttctgctctttctgggatgtttgcttctcttactatcctacttcatcttatctggtcatatggaaggagagagttcccaggcatatggtctccttggactcggaatcctcacttttctccctggtttctatgagacgcgtattgcatattactcttggagaggtgctcaaggttatcgatttactgcaatccctgactattgaggttttcacatttcatgtaaacgctaaatgtagttactagcttctgtaatgagctttatgatagtttttattgtaacacacattgccctatacatttcgaataacatctgaatgtagttactggttttcataatgagttcgagtttgatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="97896" stop="94526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97596" g_stop="97505" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97504" i_stop="95926" i_length="1579">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95925" g_stop="95612" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="406" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95611" i_stop="95057" i_length="555">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95056" g_stop="94826" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="637" r_length="231" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="638" polyA_stop="647"/>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E732078" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97596" e_stop="97505"/>
          <exon e_start="95925" e_stop="95612"/>
          <exon e_start="95056" e_stop="94826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCGGGTCTACTGTAATCGTCGCCGGTCAGCTTCCGTCGGTGTTCCGGTCACCTTGTTAGGTGAATTTGAGCTTTCTTTCTCATCAAGGTTAGTGTGAGGTTTTTCGAATCAGCAGAATGTTTTATTGATTTATATGTTTGTATATGCATCCTGTTTTTGGTAGGTGTAGCCTGTAGGTTTATTGATTGAGTTGGATTCATATGTGATTTGATCTCTGATGAGTATTGATATTGGTTTGGCCAAAAATGGTTCTTTTACTTGATTGAAAGAAATGGCATCTGGAATTTCTGATTGTTTGATTTTGATGTTCCTTAGAAAACACTCAAAAGAATTTGCATGATTTAAAAAGCCACTAAAGAATTATGATAGTCTAAACAACAACGAATACCTGGTGCAATTCCACAAGTAGGATCTGGGGAAGGTAGGATATATGCAGATGTTGCCCCTACCTTTACCTTGATCTATACATTCATGCAACCGAGACTGTGCAAAGGTAGAACAGTTTGATACTTCACTGACTGTTCCGCTTCCAAAGTCAGTCATCTGCAGCTCACACTTGGGCAAAGACGACTCTCCCGTGGTTCTATTCTTTGTTAAGTAGTATCAAGGGGATGTAGATGCTGTTGATTTATTGGAAAAAGTCTTTCAAAACAGAGGTAAAGCGATAGTGTCAATTGAGACAGTCGACTATACATTAGGATATCTGGAGGACATATGATTTCACCACGCTAATTTGGATTGGCATCTTACCAAACAAAAATGTTCTCTTGACCATTGTTTTTCTGATTGACATAGTTTCTCTAAAGAGAAAAAGTGCTCTCTTTACAAGTGTGTCAAAGTTAATAAGAGACAATTCTTCATTGTTAGAAGGCCGTATTTGCCTTTCCAGCCAATTTGCACAAAAAAAGGCAAGGAGATCAGGACAATGCTATTTGAAAAGTTCTCCTTATGATACAATTCATAAATAGGCTGTTTATGATTGAATTGGTGTGATACTGTCTTAATTTAGTGCTTTTGAGTATCAAATTTATAAGAATATGCCACTTGTAGAACTTCACAAAATGGTCAATGAGTTTTATGAATCTCGTATACTTTTCAAATTATAAGCGCTAATGTAGAAGCCATGTAAAGGTCTCACTAAATCCTCAATTGGGTGATTAGAAAATTTGATGATCCTTCAGAAAAAGGATTTGGTGACGATAACATTTAATGTTTTGGTTTATTTTTTGAGCTTTGGGATACGCTGATCGCCAAAACCACCAAATTTCTGACTCAAGAATATCTTTCCAAGACACTTTTGTAAACCTTATAAACAAAAAAGGTTCCAGAAGCGATTTTTCTTTTGTATTTCTCTAATAAATAGAGCAGACATGTCATGAGTGTGTTAGTGACAGATTAAAGGTTATCAACTCTCGCGTGTGTCGTAATACATGAAAAACTGATACATTGTAATATACTTTTGTAACAATGTAGACTGTAGTTATAGTGTTTCACCTATTTGTCATTTGTATTTATCCACCTATTCTTTGTAGTTGTATTAAAATTTTAAACTATACCTTACTTTGCCAACTTATTGTATGTTCTGGTAGTCAGATCATTGTGTTCATAATTGATTGGTGTTCTTCTGAGCTGCCTTATTCAGAGTGATCATCTGACAAATTTGCAGACATCTATTCCAATTCAAAGACTGGGAATTCTAGTGTATGGCTTCTAGGCGGAATATTAATTACAGTCGTCTCGCTGTGGATGATGATGACGACTATTATGGATATTCTGGCAAGCGAGCTGACCCTAGATTTGATTATTCACCAAAATCGTTAGATAGAATCCCCTGGAAGTCCATTGCCCTTGCTCTTTTTCTGCTCTTTCTGGGATGTTTGCTTCTCTTACTATCCTACTTCATCTTATCTGGTCATATGGAAGGAGAGAGTTCCCAGGCATATGGTCTCCTTGGACTCGGAATCCTCACTTTTCTCCCTGGTAAGTCAAAAACATACATCAATTTATACTGCTTTGGATGCTTAAGCTGCAAAACTTTTGTCCATTATTGTTCAAGATATCCTCGAGGAGAGTGTAGTAATTCATTAAGTCCAGAATCAATTTGCGGCTATGCCATTTATTTGACTGCGTGATTATCAGTTTGTGTTAACAAGGTAACTTTACATTGAATTTGCAGCACAATAAATAGGTGAGATAGCAAATGGCTGAGCTACTTGTTACCGTATCTGTCCTCTTTGTAGTTGCTATAAGCACCATATCTAGGTGATTGTAGATCTGCACTTGAAAATGGTCTTCTTTAATCGATCTCTTGGGACTTGCATTACATGTTGTAAACTTCTGGAATAGGCAATAGGCAATAGATTCTACTTCAAGTCATATTTTCTCTGTTTTGTTTAGACATTCTTGAGTCTAATACTGCCTATGCCGCTGGTTTCATATTGAGTTCTTCATTCAAGTTTCATATTCATTTTTACATTAGTAAGTTAATTAGGCAACTTCCAATTATCAACGTTAACTTTGGTAATTACTCAACAGGTTTCTATGAGACGCGTATTGCATATTACTCTTGGAGAGGTGCTCAAGGTTATCGATTTACTGCAATCCCTGACTATTGAGGTTTTCACATTTCATGTAAACGCTAAATGTAGTTACTAGCTTCTGTAATGAGCTTTATGATAGTTTTTATTGTAACACACATTGCCCTATACATTTCGAATAACATCTGAATGTAGTTACTGGTTTTCATAATGAGTTCGAGTTTGATGA</genome_strand>
        <mrna_strand>ATTTCTCGGGTCTACTGTAATCGTCGCCGGTCAGCTTCCGTCGGTGTTCCGGTCACCTTGTTAGGTGAATTTGAGCTTTCTTTCTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCTATTCCAATTCAAAGACTGGGAATTCTAGTGTATGGCTTCTAGGCGGAATATTAATTACAGTCGTCTCGCTGTGGATGATGATGACGACTATTATGGATATTCTGGCAAGCGAGCTGACCCTAGATTTGATTATTCACCAAAATCGTTAGATAGAATCCCCTGGAAGTCCATTGCCCTTGCTCTTTTTCTGCTCTTTCTGGGATGTTTGCTTCTCTTACTATCCTACTTCATCTTATCTGGTCATATGGAAGGAGAGAGTTCCCAGGCATATGGTCTCCTTGGACTCGGAATCCTCACTTTTCTCCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTATGAGACGCGTATTGCATATTACTCTTGGAGAGGTGCTCAAGGTTATCGATTTACTGCAATCCCTGACTATTGAGGTTTTCACATTTCATGTAAACGCTAAATGTAGTTACTAGCTTCTGTAATGAGCTTTATGATAGTTTTTATTGTAACACACATTGCCCTATACATTTCGAATAACATCTGAATGTAGTTACTGGTTTTCATAATGAGTTCGAGTTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E310728" ref_strand="+" ref_description="SGN-E310728 [cLEZ-15-G8]">
      <seq>tcaaaattgggcgctatttctcgggtctactgtaatcgtcgccggtcagcttccgtcggtgttccggtcaccttgttaggtgaatttgagctttctttctcatcaagacatctattccaattcaaagactgggaattctagtgtatggcttctaggcggaatattaattacagtcgtctcgctgtggatgatgatgacgactattatggatattctggcaagcgagctgaccctagatttgattattcaccaaaatcgttagatagaatcccctggaagtccattgcccttgctctttttctgctctttctgggatgtttgcttctcttactatcctacttcatcttatctggtcatatggaaggagagagttcccaggcatatggtctccttggactcggaatcctcacttttctccctggtttctatgagacgcgtattgcatattactcttggagagggtgctcaggttatcgatttactgcaatccctgactattgaggttttcacatttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="97911" stop="94661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97611" g_stop="97505" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97504" i_stop="95926" i_length="1579">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95925" g_stop="95612" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="421" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95611" i_stop="95057" i_length="555">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95056" g_stop="94961" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="517" r_length="96" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E310728" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97611" e_stop="97505"/>
          <exon e_start="95925" e_stop="95612"/>
          <exon e_start="95056" e_stop="94961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAATTGGGCGCTATTTCTCGGGTCTACTGTAATCGTCGCCGGTCAGCTTCCGTCGGTGTTCCGGTCACCTTGTTAGGTGAATTTGAGCTTTCTTTCTCATCAAGGTTAGTGTGAGGTTTTTCGAATCAGCAGAATGTTTTATTGATTTATATGTTTGTATATGCATCCTGTTTTTGGTAGGTGTAGCCTGTAGGTTTATTGATTGAGTTGGATTCATATGTGATTTGATCTCTGATGAGTATTGATATTGGTTTGGCCAAAAATGGTTCTTTTACTTGATTGAAAGAAATGGCATCTGGAATTTCTGATTGTTTGATTTTGATGTTCCTTAGAAAACACTCAAAAGAATTTGCATGATTTAAAAAGCCACTAAAGAATTATGATAGTCTAAACAACAACGAATACCTGGTGCAATTCCACAAGTAGGATCTGGGGAAGGTAGGATATATGCAGATGTTGCCCCTACCTTTACCTTGATCTATACATTCATGCAACCGAGACTGTGCAAAGGTAGAACAGTTTGATACTTCACTGACTGTTCCGCTTCCAAAGTCAGTCATCTGCAGCTCACACTTGGGCAAAGACGACTCTCCCGTGGTTCTATTCTTTGTTAAGTAGTATCAAGGGGATGTAGATGCTGTTGATTTATTGGAAAAAGTCTTTCAAAACAGAGGTAAAGCGATAGTGTCAATTGAGACAGTCGACTATACATTAGGATATCTGGAGGACATATGATTTCACCACGCTAATTTGGATTGGCATCTTACCAAACAAAAATGTTCTCTTGACCATTGTTTTTCTGATTGACATAGTTTCTCTAAAGAGAAAAAGTGCTCTCTTTACAAGTGTGTCAAAGTTAATAAGAGACAATTCTTCATTGTTAGAAGGCCGTATTTGCCTTTCCAGCCAATTTGCACAAAAAAAGGCAAGGAGATCAGGACAATGCTATTTGAAAAGTTCTCCTTATGATACAATTCATAAATAGGCTGTTTATGATTGAATTGGTGTGATACTGTCTTAATTTAGTGCTTTTGAGTATCAAATTTATAAGAATATGCCACTTGTAGAACTTCACAAAATGGTCAATGAGTTTTATGAATCTCGTATACTTTTCAAATTATAAGCGCTAATGTAGAAGCCATGTAAAGGTCTCACTAAATCCTCAATTGGGTGATTAGAAAATTTGATGATCCTTCAGAAAAAGGATTTGGTGACGATAACATTTAATGTTTTGGTTTATTTTTTGAGCTTTGGGATACGCTGATCGCCAAAACCACCAAATTTCTGACTCAAGAATATCTTTCCAAGACACTTTTGTAAACCTTATAAACAAAAAAGGTTCCAGAAGCGATTTTTCTTTTGTATTTCTCTAATAAATAGAGCAGACATGTCATGAGTGTGTTAGTGACAGATTAAAGGTTATCAACTCTCGCGTGTGTCGTAATACATGAAAAACTGATACATTGTAATATACTTTTGTAACAATGTAGACTGTAGTTATAGTGTTTCACCTATTTGTCATTTGTATTTATCCACCTATTCTTTGTAGTTGTATTAAAATTTTAAACTATACCTTACTTTGCCAACTTATTGTATGTTCTGGTAGTCAGATCATTGTGTTCATAATTGATTGGTGTTCTTCTGAGCTGCCTTATTCAGAGTGATCATCTGACAAATTTGCAGACATCTATTCCAATTCAAAGACTGGGAATTCTAGTGTATGGCTTCTAGGCGGAATATTAATTACAGTCGTCTCGCTGTGGATGATGATGACGACTATTATGGATATTCTGGCAAGCGAGCTGACCCTAGATTTGATTATTCACCAAAATCGTTAGATAGAATCCCCTGGAAGTCCATTGCCCTTGCTCTTTTTCTGCTCTTTCTGGGATGTTTGCTTCTCTTACTATCCTACTTCATCTTATCTGGTCATATGGAAGGAGAGAGTTCCCAGGCATATGGTCTCCTTGGACTCGGAATCCTCACTTTTCTCCCTGGTAAGTCAAAAACATACATCAATTTATACTGCTTTGGATGCTTAAGCTGCAAAACTTTTGTCCATTATTGTTCAAGATATCCTCGAGGAGAGTGTAGTAATTCATTAAGTCCAGAATCAATTTGCGGCTATGCCATTTATTTGACTGCGTGATTATCAGTTTGTGTTAACAAGGTAACTTTACATTGAATTTGCAGCACAATAAATAGGTGAGATAGCAAATGGCTGAGCTACTTGTTACCGTATCTGTCCTCTTTGTAGTTGCTATAAGCACCATATCTAGGTGATTGTAGATCTGCACTTGAAAATGGTCTTCTTTAATCGATCTCTTGGGACTTGCATTACATGTTGTAAACTTCTGGAATAGGCAATAGGCAATAGATTCTACTTCAAGTCATATTTTCTCTGTTTTGTTTAGACATTCTTGAGTCTAATACTGCCTATGCCGCTGGTTTCATATTGAGTTCTTCATTCAAGTTTCATATTCATTTTTACATTAGTAAGTTAATTAGGCAACTTCCAATTATCAACGTTAACTTTGGTAATTACTCAACAGGTTTCTATGAGACGCGTATTGCATATTACTCTTGGAGA-GGTGCTCAAGGTTATCGATTTACTGCAATCCCTGACTATTGAGGTTTTCACATTTCAT</genome_strand>
        <mrna_strand>TCAAAATTGGGCGCTATTTCTCGGGTCTACTGTAATCGTCGCCGGTCAGCTTCCGTCGGTGTTCCGGTCACCTTGTTAGGTGAATTTGAGCTTTCTTTCTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCTATTCCAATTCAAAGACTGGGAATTCTAGTGTATGGCTTCTAGGCGGAATATTAATTACAGTCGTCTCGCTGTGGATGATGATGACGACTATTATGGATATTCTGGCAAGCGAGCTGACCCTAGATTTGATTATTCACCAAAATCGTTAGATAGAATCCCCTGGAAGTCCATTGCCCTTGCTCTTTTTCTGCTCTTTCTGGGATGTTTGCTTCTCTTACTATCCTACTTCATCTTATCTGGTCATATGGAAGGAGAGAGTTCCCAGGCATATGGTCTCCTTGGACTCGGAATCCTCACTTTTCTCCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTATGAGACGCGTATTGCATATTACTCTTGGAGAGGGTGCTC-AGGTTATCGATTTACTGCAATCCCTGACTATTGAGGTTTTCACATTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E208924" ref_strand="+" ref_description="SGN-E208924 [cLEC-38-C11]">
      <seq>gatattgcagtatcgggtcaaaattgggcgctatttctcgggtctactgtaatcgtcgccggtcagcttccgtcggtgttccggtcaccttgttaggtgaatttgagctttctttctcatcaagacatctattccaattcaaagactgggaattctagtgtatggcttctaggcggaatattaattacagtcgtctcgctgtggatgatgatgaccactattatggatattctggcaagcgagctgaccctagatttgattattcaccaaaatcgttagatagaatcccctggaagtccattgcccttgctctttttctgctctttctgggatgtttgcttctcttactatcctacttcatcttatctggtcatatggaaggagagagttcccaggcatatggtcttcttggactcggaatcctcacttttctccctggtttctatgacacgcgtattgcatattactcttggagaggtgctcaaggttatcgatttactgcaatgcctgacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="97928" stop="94681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97628" g_stop="97505" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97504" i_stop="95926" i_length="1579">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95925" g_stop="95612" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="438" r_length="314" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95611" i_stop="95057" i_length="555">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95056" g_stop="94981" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="514" r_length="76" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E208924" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97628" e_stop="97505"/>
          <exon e_start="95925" e_stop="95612"/>
          <exon e_start="95056" e_stop="94981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTGCAGTATCGGGTCAAAATTGGGCGCTATTTCTCGGGTCTACTGTAATCGTCGCCGGTCAGCTTCCGTCGGTGTTCCGGTCACCTTGTTAGGTGAATTTGAGCTTTCTTTCTCATCAAGGTTAGTGTGAGGTTTTTCGAATCAGCAGAATGTTTTATTGATTTATATGTTTGTATATGCATCCTGTTTTTGGTAGGTGTAGCCTGTAGGTTTATTGATTGAGTTGGATTCATATGTGATTTGATCTCTGATGAGTATTGATATTGGTTTGGCCAAAAATGGTTCTTTTACTTGATTGAAAGAAATGGCATCTGGAATTTCTGATTGTTTGATTTTGATGTTCCTTAGAAAACACTCAAAAGAATTTGCATGATTTAAAAAGCCACTAAAGAATTATGATAGTCTAAACAACAACGAATACCTGGTGCAATTCCACAAGTAGGATCTGGGGAAGGTAGGATATATGCAGATGTTGCCCCTACCTTTACCTTGATCTATACATTCATGCAACCGAGACTGTGCAAAGGTAGAACAGTTTGATACTTCACTGACTGTTCCGCTTCCAAAGTCAGTCATCTGCAGCTCACACTTGGGCAAAGACGACTCTCCCGTGGTTCTATTCTTTGTTAAGTAGTATCAAGGGGATGTAGATGCTGTTGATTTATTGGAAAAAGTCTTTCAAAACAGAGGTAAAGCGATAGTGTCAATTGAGACAGTCGACTATACATTAGGATATCTGGAGGACATATGATTTCACCACGCTAATTTGGATTGGCATCTTACCAAACAAAAATGTTCTCTTGACCATTGTTTTTCTGATTGACATAGTTTCTCTAAAGAGAAAAAGTGCTCTCTTTACAAGTGTGTCAAAGTTAATAAGAGACAATTCTTCATTGTTAGAAGGCCGTATTTGCCTTTCCAGCCAATTTGCACAAAAAAAGGCAAGGAGATCAGGACAATGCTATTTGAAAAGTTCTCCTTATGATACAATTCATAAATAGGCTGTTTATGATTGAATTGGTGTGATACTGTCTTAATTTAGTGCTTTTGAGTATCAAATTTATAAGAATATGCCACTTGTAGAACTTCACAAAATGGTCAATGAGTTTTATGAATCTCGTATACTTTTCAAATTATAAGCGCTAATGTAGAAGCCATGTAAAGGTCTCACTAAATCCTCAATTGGGTGATTAGAAAATTTGATGATCCTTCAGAAAAAGGATTTGGTGACGATAACATTTAATGTTTTGGTTTATTTTTTGAGCTTTGGGATACGCTGATCGCCAAAACCACCAAATTTCTGACTCAAGAATATCTTTCCAAGACACTTTTGTAAACCTTATAAACAAAAAAGGTTCCAGAAGCGATTTTTCTTTTGTATTTCTCTAATAAATAGAGCAGACATGTCATGAGTGTGTTAGTGACAGATTAAAGGTTATCAACTCTCGCGTGTGTCGTAATACATGAAAAACTGATACATTGTAATATACTTTTGTAACAATGTAGACTGTAGTTATAGTGTTTCACCTATTTGTCATTTGTATTTATCCACCTATTCTTTGTAGTTGTATTAAAATTTTAAACTATACCTTACTTTGCCAACTTATTGTATGTTCTGGTAGTCAGATCATTGTGTTCATAATTGATTGGTGTTCTTCTGAGCTGCCTTATTCAGAGTGATCATCTGACAAATTTGCAGACATCTATTCCAATTCAAAGACTGGGAATTCTAGTGTATGGCTTCTAGGCGGAATATTAATTACAGTCGTCTCGCTGTGGATGATGATGACGACTATTATGGATATTCTGGCAAGCGAGCTGACCCTAGATTTGATTATTCACCAAAATCGTTAGATAGAATCCCCTGGAAGTCCATTGCCCTTGCTCTTTTTCTGCTCTTTCTGGGATGTTTGCTTCTCTTACTATCCTACTTCATCTTATCTGGTCATATGGAAGGAGAGAGTTCCCAGGCATATGGTCTCCTTGGACTCGGAATCCTCACTTTTCTCCCTGGTAAGTCAAAAACATACATCAATTTATACTGCTTTGGATGCTTAAGCTGCAAAACTTTTGTCCATTATTGTTCAAGATATCCTCGAGGAGAGTGTAGTAATTCATTAAGTCCAGAATCAATTTGCGGCTATGCCATTTATTTGACTGCGTGATTATCAGTTTGTGTTAACAAGGTAACTTTACATTGAATTTGCAGCACAATAAATAGGTGAGATAGCAAATGGCTGAGCTACTTGTTACCGTATCTGTCCTCTTTGTAGTTGCTATAAGCACCATATCTAGGTGATTGTAGATCTGCACTTGAAAATGGTCTTCTTTAATCGATCTCTTGGGACTTGCATTACATGTTGTAAACTTCTGGAATAGGCAATAGGCAATAGATTCTACTTCAAGTCATATTTTCTCTGTTTTGTTTAGACATTCTTGAGTCTAATACTGCCTATGCCGCTGGTTTCATATTGAGTTCTTCATTCAAGTTTCATATTCATTTTTACATTAGTAAGTTAATTAGGCAACTTCCAATTATCAACGTTAACTTTGGTAATTACTCAACAGGTTTCTATGAGACGCGTATTGCATATTACTCTTGGAGAGGTGCTCAAGGTTATCGATTTACTGCAATCCCTGACTA</genome_strand>
        <mrna_strand>GATATTGCAGTATCGGGTCAAAATTGGGCGCTATTTCTCGGGTCTACTGTAATCGTCGCCGGTCAGCTTCCGTCGGTGTTCCGGTCACCTTGTTAGGTGAATTTGAGCTTTCTTTCTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCTATTCCAATTCAAAGACTGGGAATTCTAGTGTATGGCTTCTAGGCGGAATATTAATTACAGTCGTCTCGCTGTGGATGATGATGACCACTATTATGGATATTCTGGCAAGCGAGCTGACCCTAGATTTGATTATTCACCAAAATCGTTAGATAGAATCCCCTGGAAGTCCATTGCCCTTGCTCTTTTTCTGCTCTTTCTGGGATGTTTGCTTCTCTTACTATCCTACTTCATCTTATCTGGTCATATGGAAGGAGAGAGTTCCCAGGCATATGGTCTTCTTGGACTCGGAATCCTCACTTTTCTCCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTATGACACGCGTATTGCATATTACTCTTGGAGAGGTGCTCAAGGTTATCGATTTACTGCAATGCCTGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E283721" ref_strand="+" ref_description="SGN-E283721 [cLES-1-E23]">
      <seq>ctatttctcgggtctactgtaatcgtcgccggtcagcttccgtcggtgttccggtcaccttgttaggtgaatttgagctttctttctcatcaagacatctattccaattcaaagactgggaattctagtgtatggcttctaggcggaatattaattacagtcgtctcgctgtggatgatgatgacgactattatggatattctggcaagcgagctgaccctagatttgattattcaccaaaatcgttagatagaatcccctggaagtccattgcccttgctctttttctgctctttctgggatgtttgcttctcttactatcctacttcatcttatctggtcatatggaaggagagagttcccaggcatatggtctccttggactcggaatcctcacttttctccctggtttctatgagacgcgtattgcatattactcttggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="97898" stop="94720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97598" g_stop="97505" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97504" i_stop="95926" i_length="1579">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95925" g_stop="95612" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="408" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95611" i_stop="95057" i_length="555">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95056" g_stop="95020" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="445" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E283721" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97598" e_stop="97505"/>
          <exon e_start="95925" e_stop="95612"/>
          <exon e_start="95056" e_stop="95020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTTCTCGGGTCTACTGTAATCGTCGCCGGTCAGCTTCCGTCGGTGTTCCGGTCACCTTGTTAGGTGAATTTGAGCTTTCTTTCTCATCAAGGTTAGTGTGAGGTTTTTCGAATCAGCAGAATGTTTTATTGATTTATATGTTTGTATATGCATCCTGTTTTTGGTAGGTGTAGCCTGTAGGTTTATTGATTGAGTTGGATTCATATGTGATTTGATCTCTGATGAGTATTGATATTGGTTTGGCCAAAAATGGTTCTTTTACTTGATTGAAAGAAATGGCATCTGGAATTTCTGATTGTTTGATTTTGATGTTCCTTAGAAAACACTCAAAAGAATTTGCATGATTTAAAAAGCCACTAAAGAATTATGATAGTCTAAACAACAACGAATACCTGGTGCAATTCCACAAGTAGGATCTGGGGAAGGTAGGATATATGCAGATGTTGCCCCTACCTTTACCTTGATCTATACATTCATGCAACCGAGACTGTGCAAAGGTAGAACAGTTTGATACTTCACTGACTGTTCCGCTTCCAAAGTCAGTCATCTGCAGCTCACACTTGGGCAAAGACGACTCTCCCGTGGTTCTATTCTTTGTTAAGTAGTATCAAGGGGATGTAGATGCTGTTGATTTATTGGAAAAAGTCTTTCAAAACAGAGGTAAAGCGATAGTGTCAATTGAGACAGTCGACTATACATTAGGATATCTGGAGGACATATGATTTCACCACGCTAATTTGGATTGGCATCTTACCAAACAAAAATGTTCTCTTGACCATTGTTTTTCTGATTGACATAGTTTCTCTAAAGAGAAAAAGTGCTCTCTTTACAAGTGTGTCAAAGTTAATAAGAGACAATTCTTCATTGTTAGAAGGCCGTATTTGCCTTTCCAGCCAATTTGCACAAAAAAAGGCAAGGAGATCAGGACAATGCTATTTGAAAAGTTCTCCTTATGATACAATTCATAAATAGGCTGTTTATGATTGAATTGGTGTGATACTGTCTTAATTTAGTGCTTTTGAGTATCAAATTTATAAGAATATGCCACTTGTAGAACTTCACAAAATGGTCAATGAGTTTTATGAATCTCGTATACTTTTCAAATTATAAGCGCTAATGTAGAAGCCATGTAAAGGTCTCACTAAATCCTCAATTGGGTGATTAGAAAATTTGATGATCCTTCAGAAAAAGGATTTGGTGACGATAACATTTAATGTTTTGGTTTATTTTTTGAGCTTTGGGATACGCTGATCGCCAAAACCACCAAATTTCTGACTCAAGAATATCTTTCCAAGACACTTTTGTAAACCTTATAAACAAAAAAGGTTCCAGAAGCGATTTTTCTTTTGTATTTCTCTAATAAATAGAGCAGACATGTCATGAGTGTGTTAGTGACAGATTAAAGGTTATCAACTCTCGCGTGTGTCGTAATACATGAAAAACTGATACATTGTAATATACTTTTGTAACAATGTAGACTGTAGTTATAGTGTTTCACCTATTTGTCATTTGTATTTATCCACCTATTCTTTGTAGTTGTATTAAAATTTTAAACTATACCTTACTTTGCCAACTTATTGTATGTTCTGGTAGTCAGATCATTGTGTTCATAATTGATTGGTGTTCTTCTGAGCTGCCTTATTCAGAGTGATCATCTGACAAATTTGCAGACATCTATTCCAATTCAAAGACTGGGAATTCTAGTGTATGGCTTCTAGGCGGAATATTAATTACAGTCGTCTCGCTGTGGATGATGATGACGACTATTATGGATATTCTGGCAAGCGAGCTGACCCTAGATTTGATTATTCACCAAAATCGTTAGATAGAATCCCCTGGAAGTCCATTGCCCTTGCTCTTTTTCTGCTCTTTCTGGGATGTTTGCTTCTCTTACTATCCTACTTCATCTTATCTGGTCATATGGAAGGAGAGAGTTCCCAGGCATATGGTCTCCTTGGACTCGGAATCCTCACTTTTCTCCCTGGTAAGTCAAAAACATACATCAATTTATACTGCTTTGGATGCTTAAGCTGCAAAACTTTTGTCCATTATTGTTCAAGATATCCTCGAGGAGAGTGTAGTAATTCATTAAGTCCAGAATCAATTTGCGGCTATGCCATTTATTTGACTGCGTGATTATCAGTTTGTGTTAACAAGGTAACTTTACATTGAATTTGCAGCACAATAAATAGGTGAGATAGCAAATGGCTGAGCTACTTGTTACCGTATCTGTCCTCTTTGTAGTTGCTATAAGCACCATATCTAGGTGATTGTAGATCTGCACTTGAAAATGGTCTTCTTTAATCGATCTCTTGGGACTTGCATTACATGTTGTAAACTTCTGGAATAGGCAATAGGCAATAGATTCTACTTCAAGTCATATTTTCTCTGTTTTGTTTAGACATTCTTGAGTCTAATACTGCCTATGCCGCTGGTTTCATATTGAGTTCTTCATTCAAGTTTCATATTCATTTTTACATTAGTAAGTTAATTAGGCAACTTCCAATTATCAACGTTAACTTTGGTAATTACTCAACAGGTTTCTATGAGACGCGTATTGCATATTACTCTTGGAG</genome_strand>
        <mrna_strand>CTATTTCTCGGGTCTACTGTAATCGTCGCCGGTCAGCTTCCGTCGGTGTTCCGGTCACCTTGTTAGGTGAATTTGAGCTTTCTTTCTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCTATTCCAATTCAAAGACTGGGAATTCTAGTGTATGGCTTCTAGGCGGAATATTAATTACAGTCGTCTCGCTGTGGATGATGATGACGACTATTATGGATATTCTGGCAAGCGAGCTGACCCTAGATTTGATTATTCACCAAAATCGTTAGATAGAATCCCCTGGAAGTCCATTGCCCTTGCTCTTTTTCTGCTCTTTCTGGGATGTTTGCTTCTCTTACTATCCTACTTCATCTTATCTGGTCATATGGAAGGAGAGAGTTCCCAGGCATATGGTCTCCTTGGACTCGGAATCCTCACTTTTCTCCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTATGAGACGCGTATTGCATATTACTCTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E398022" ref_strand="+" ref_description="SGN-E398022 [TUS-38-G22]">
      <seq>agacattgcagtatcgggtcaaaattgggcgctatttctcgggtctactgtaatcgtcgccggtcagcttccgtcgtcgttccggtcaccttgttaggtgaatttgagctttctttctcatcaagacatctattccaattcaaagactgggaattctattgtatggcttctacgcagaatattaattacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="97929" stop="95559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97629" g_stop="97505" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97504" i_stop="95926" i_length="1579">
            <donor d_prob="0.943" d_score="0.96"/>
            <acceptor a_prob="0.541" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95925" g_stop="95859" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="192" r_length="67" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E398022" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>192</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97629" e_stop="97505"/>
          <exon e_start="95925" e_stop="95859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATATTGCAGTATCGGGTCAAAATTGGGCGCTATTTCTCGGGTCTACTGTAATCGTCGCCGGTCAGCTTCCGTCGGTGTTCCGGTCACCTTGTTAGGTGAATTTGAGCTTTCTTTCTCATCAAGGTTAGTGTGAGGTTTTTCGAATCAGCAGAATGTTTTATTGATTTATATGTTTGTATATGCATCCTGTTTTTGGTAGGTGTAGCCTGTAGGTTTATTGATTGAGTTGGATTCATATGTGATTTGATCTCTGATGAGTATTGATATTGGTTTGGCCAAAAATGGTTCTTTTACTTGATTGAAAGAAATGGCATCTGGAATTTCTGATTGTTTGATTTTGATGTTCCTTAGAAAACACTCAAAAGAATTTGCATGATTTAAAAAGCCACTAAAGAATTATGATAGTCTAAACAACAACGAATACCTGGTGCAATTCCACAAGTAGGATCTGGGGAAGGTAGGATATATGCAGATGTTGCCCCTACCTTTACCTTGATCTATACATTCATGCAACCGAGACTGTGCAAAGGTAGAACAGTTTGATACTTCACTGACTGTTCCGCTTCCAAAGTCAGTCATCTGCAGCTCACACTTGGGCAAAGACGACTCTCCCGTGGTTCTATTCTTTGTTAAGTAGTATCAAGGGGATGTAGATGCTGTTGATTTATTGGAAAAAGTCTTTCAAAACAGAGGTAAAGCGATAGTGTCAATTGAGACAGTCGACTATACATTAGGATATCTGGAGGACATATGATTTCACCACGCTAATTTGGATTGGCATCTTACCAAACAAAAATGTTCTCTTGACCATTGTTTTTCTGATTGACATAGTTTCTCTAAAGAGAAAAAGTGCTCTCTTTACAAGTGTGTCAAAGTTAATAAGAGACAATTCTTCATTGTTAGAAGGCCGTATTTGCCTTTCCAGCCAATTTGCACAAAAAAAGGCAAGGAGATCAGGACAATGCTATTTGAAAAGTTCTCCTTATGATACAATTCATAAATAGGCTGTTTATGATTGAATTGGTGTGATACTGTCTTAATTTAGTGCTTTTGAGTATCAAATTTATAAGAATATGCCACTTGTAGAACTTCACAAAATGGTCAATGAGTTTTATGAATCTCGTATACTTTTCAAATTATAAGCGCTAATGTAGAAGCCATGTAAAGGTCTCACTAAATCCTCAATTGGGTGATTAGAAAATTTGATGATCCTTCAGAAAAAGGATTTGGTGACGATAACATTTAATGTTTTGGTTTATTTTTTGAGCTTTGGGATACGCTGATCGCCAAAACCACCAAATTTCTGACTCAAGAATATCTTTCCAAGACACTTTTGTAAACCTTATAAACAAAAAAGGTTCCAGAAGCGATTTTTCTTTTGTATTTCTCTAATAAATAGAGCAGACATGTCATGAGTGTGTTAGTGACAGATTAAAGGTTATCAACTCTCGCGTGTGTCGTAATACATGAAAAACTGATACATTGTAATATACTTTTGTAACAATGTAGACTGTAGTTATAGTGTTTCACCTATTTGTCATTTGTATTTATCCACCTATTCTTTGTAGTTGTATTAAAATTTTAAACTATACCTTACTTTGCCAACTTATTGTATGTTCTGGTAGTCAGATCATTGTGTTCATAATTGATTGGTGTTCTTCTGAGCTGCCTTATTCAGAGTGATCATCTGACAAATTTGCAGACATCTATTCCAATTCAAAGACTGGGAATTCTAGTGTATGGCTTCTAGGCGGAATATTAATTACAGT</genome_strand>
        <mrna_strand>AGACATTGCAGTATCGGGTCAAAATTGGGCGCTATTTCTCGGGTCTACTGTAATCGTCGCCGGTCAGCTTCCGTCGTCGTTCCGGTCACCTTGTTAGGTGAATTTGAGCTTTCTTTCTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCTATTCCAATTCAAAGACTGGGAATTCTATTGTATGGCTTCTACGCAGAATATTAATTACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-u1qjIj/sgn_ests_tomato" ref_id="SGN-E274540" ref_strand="+" ref_description="SGN-E274540 [cLEN-11-D16]">
      <seq>ttttgagtatggacaaggacaacaatcaacttcaccatgtgagcatttgcctcagacgaactgcaagacggaaactttacgagatcaaaaggaaatgcttgtggagaattcagtctcaagctctgttcaattacaagaactgcaagaaaaacttgatttattgaaagcagcagttgaaatggcttctgatcacaaacatcccagtgacttttatgtgaatcagctaaacgatcaggtggaagtgaaaaggggcaaaattgttgaaatggaaagtcactgcattgatagaagcaaggcccttgagcaaaagaaggtttctcttgaggaaaagttaagagcaacaaatccagagacctatgaaaaatataaaaaggtggaagagattgagttgaagttggagaatatattagccgaaaacaaaagaagagaggaagaactcattgtactctcagccaaggctgagaagcagcccaaattacaacctagaagaacctacattcagcgtgttgaagagatcaccaaaaacagccggaagcaggatgtggacatagaaagaatattaaaagaaacaagggagcttcagttagagagcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-Jw6aM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="108565" stop="106801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108265" g_stop="108211" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108210" i_stop="107984" i_length="227">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.686" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107983" g_stop="107760" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="279" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107759" i_stop="107658" i_length="102">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107657" g_stop="107511" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="426" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107510" i_stop="107273" i_length="238">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107272" g_stop="107101" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="598" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-E274540" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108265" e_stop="108211"/>
          <exon e_start="107983" e_stop="107760"/>
          <exon e_start="107657" e_stop="107511"/>
          <exon e_start="107272" e_stop="107101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAGTATGGACAAGGACAACAATCAACTTCACCATGTGAGCATTTGCCTCAGGTACTTAATTATGAATGGATTGCATTGCTCTTTAGTATATTGTGGTAGACCTTTTACGCTTTGAGCTAGTTGTCCAATAGAGCAGAACAAGCCAATAATTTTTTAATTGGAGCATATAAAGATAACAGAAATAGGGAACAAACAATGATACTATTTGATTTCGTGGTTAGGCATTGGGAAAGCCTCCAACTTGTCGTCTTATCTTCTAAATTCATGCCATATTGCAGACGAACTGCAAGACGGAAACTTTACGAGATCAAAAGGAAATGCTTGTGGAGAATTCAGTCTCAAGCTCTGTTCAATTACAAGAACTGCAAGAAAAACTTGATTTATTGAAAGCAGCAGTTGAAATGGCTTCTGATCACAAACATCCCAGTGACTTTTATGTGAATCAGCTAAACGATCAGGTGGAAGTGAAAAGGGGCAAAATTGTTGAAATGGAAAGTCACTGGTAGGATACTGACGTTTCTATATTTTAAACATTTTTACTTATATTTCCCCTATTGAAACTTGGATGATATCAATTGTTAAGCCTTTTTAAAATATTGTACAGCATTGATAGAAGCAAGGCCCTTGAGCAAAAGAAGGTTTCTCTTGAGGAAAAGTTAAGAGCAACAAATCCAGAGACCTATGAAAAATATAAAAAGGTGGAAGAGATTGAGTTGAAGTTGGAGAATATATTAGCCGAAAACAAAAGAAGGTACGATCTTCTATTAGGTCATGCAAAATATCCGTCGTTTGTTAGATTACATAGTTGAACCAAAAGAGAAATTGAGAGAAGAAACTGTACCATTTTTGGTTTTTTATCGTTTGGATTCTTTGACATTTAAGAATTTTCATTACTCATTATGGAAAGGGGTCAAGTTGTGTGGATCTATTTGTATATCCGAGCTTTTAATGCTGCTTTGTTTGAAAGTTTGGTATGCGTAACTCTGCAGAGAGGAAGAACTCATTGTACTCTCAGCCAAGGCTGAGAAGCAGCCCAAATTACAACCTAGAAGAACCTACATTCAGCGTGTTGAAGAGATCACCAAAAACAGCCGGAAGCAGGATGTGGACATAGAAAGAATATTAAAAGAAACAAGGGAGCTTCAGTTAGAGAGCAACTTT</genome_strand>
        <mrna_strand>TTTTGAGTATGGACAAGGACAACAATCAACTTCACCATGTGAGCATTTGCCTCAG...................................................................................................................................................................................................................................ACGAACTGCAAGACGGAAACTTTACGAGATCAAAAGGAAATGCTTGTGGAGAATTCAGTCTCAAGCTCTGTTCAATTACAAGAACTGCAAGAAAAACTTGATTTATTGAAAGCAGCAGTTGAAATGGCTTCTGATCACAAACATCCCAGTGACTTTTATGTGAATCAGCTAAACGATCAGGTGGAAGTGAAAAGGGGCAAAATTGTTGAAATGGAAAGTCACTG......................................................................................................CATTGATAGAAGCAAGGCCCTTGAGCAAAAGAAGGTTTCTCTTGAGGAAAAGTTAAGAGCAACAAATCCAGAGACCTATGAAAAATATAAAAAGGTGGAAGAGATTGAGTTGAAGTTGGAGAATATATTAGCCGAAAACAAAAGAAG..............................................................................................................................................................................................................................................AGAGGAAGAACTCATTGTACTCTCAGCCAAGGCTGAGAAGCAGCCCAAATTACAACCTAGAAGAACCTACATTCAGCGTGTTGAAGAGATCACCAAAAACAGCCGGAAGCAGGATGTGGACATAGAAAGAATATTAAAAGAAACAAGGGAGCTTCAGTTAGAGAGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>109</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="10523" PGL_stop="11197"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10523" e_stop="11197"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="10523" e_stop="11197" e_length="675"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10523" stop="11197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539355" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTGTTCATGAAGAAGCATTAGAATGATCCTTGATAATGTGTGTTACACAATCTCACTATACATGCTGCTGTAGGTATCAGAGAAACAAATATGGCCAAAAATGATCTACATATACATCATATCATGCATGATACATAAACTACTCCTATTTGCTTGCCAGAACTTCATCTAGATAAAAAGACTCCATTGATCGATCTGTTCCAGAGCAGCCATATGGTGAACTTATCAGATCATCTGCTTTCTCATTGAACATCCTAACTTCTGTTTCTTGGTTTCCCTTTTTACCTCGATCTCCCCTAGAAGACACTGTTTTGTGTTTGATACCAATAGCTTCAGCCTGATCTGCAAATAATTTCTTTGAGATGGATGAACTGCAAATTTGTTTATACACATCGTAGGTAGCTGCATGAGTGTGTTCCCCGTTCAGAATGTTTGAAAGAGGATGCAACACAGAAATTGGATCACTGTTCCTACTTAGAGTTTCCTTCATTTCTAGAAACTTAGAAACCAGTTCTGGCTTGCTAAACTGAATAAACACAGCACTTTCATCCAAGTGGTAGACAGAAGAAACAGGATTTGGGCCAAAGGCTTGTGTTATACAAGCTTTTATCTCCCTTGCTTTTAGTTTAGATGGAAATCCCCACAACAGAATGATGCTAGGAAATGAGATATCC</gDNA_template>
            <first_frame> S  V  H  E  E  A  L  E  *  S  L  I  M  C  V  T  Q  S  H  Y  T  C  C  C  R  Y  Q  R  N  K  Y  G  Q  K  *  S  T  Y  T  S  Y  H  A  *  Y  I  N  Y  S  Y  L  L  A  R  T  S  S  R  *  K  D  S  I  D  R  S  V  P  E  Q  P  Y  G  E  L  I  R  S  S  A  F  S  L  N  I  L  T  S  V  S  W  F  P  F  L  P  R  S  P  L  E  D  T  V  L  C  L  I  P  I  A  S  A  *  S  A  N  N  F  F  E  M  D  E  L  Q  I  C  L  Y  T  S  *  V  A  A  *  V  C  S  P  F  R  M  F  E  R  G  C  N  T  E  I  G  S  L  F  L  L  R  V  S  F  I  S  R  N  L  E  T  S  S  G  L  L  N  *  I  N  T  A  L  S  S  K  W  *  T  E  E  T  G  F  G  P  K  A  C  V  I  Q  A  F  I  S  L  A  F  S  L  D  G  N  P  H  N  R  M  M  L  G  N  E  I  S </first_frame>
            <second_frame>  L  F  M  K  K  H  *  N  D  P  *  *  C  V  L  H  N  L  T  I  H  A  A  V  G  I  R  E  T  N  M  A  K  N  D  L  H  I  H  H  I  M  H  D  T  *  T  T  P  I  C  L  P  E  L  H  L  D  K  K  T  P  L  I  D  L  F  Q  S  S  H  M  V  N  L  S  D  H  L  L  S  H  *  T  S  *  L  L  F  L  G  F  P  F  Y  L  D  L  P  *  K  T  L  F  C  V  *  Y  Q  *  L  Q  P  D  L  Q  I  I  S  L  R  W  M  N  C  K  F  V  Y  T  H  R  R  *  L  H  E  C  V  P  R  S  E  C  L  K  E  D  A  T  Q  K  L  D  H  C  S  Y  L  E  F  P  S  F  L  E  T  *  K  P  V  L  A  C  *  T  E  *  T  Q  H  F  H  P  S  G  R  Q  K  K  Q  D  L  G  Q  R  L  V  L  Y  K  L  L  S  P  L  L  L  V  *  M  E  I  P  T  T  E  *  C  *  E  M  R  Y   </second_frame>
            <third_frame>   C  S  *  R  S  I  R  M  I  L  D  N  V  C  Y  T  I  S  L  Y  M  L  L  *  V  S  E  K  Q  I  W  P  K  M  I  Y  I  Y  I  I  S  C  M  I  H  K  L  L  L  F  A  C  Q  N  F  I  *  I  K  R  L  H  *  S  I  C  S  R  A  A  I  W  *  T  Y  Q  I  I  C  F  L  I  E  H  P  N  F  C  F  L  V  S  L  F  T  S  I  S  P  R  R  H  C  F  V  F  D  T  N  S  F  S  L  I  C  K  *  F  L  *  D  G  *  T  A  N  L  F  I  H  I  V  G  S  C  M  S  V  F  P  V  Q  N  V  *  K  R  M  Q  H  R  N  W  I  T  V  P  T  *  S  F  L  H  F  *  K  L  R  N  Q  F  W  L  A  K  L  N  K  H  S  T  F  I  Q  V  V  D  R  R  N  R  I  W  A  K  G  L  C  Y  T  S  F  Y  L  P  C  F  *  F  R  W  K  S  P  Q  Q  N  D  A  R  K  *  D  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0309B15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="12184" PGL_stop="11062"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12184" e_stop="12181"/>
            <exon e_start="12099" e_stop="11829"/>
            <exon e_start="11461" e_stop="11062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.844" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.882" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12184" e_stop="12181" e_length="4"/>
          </exon>
          <intron i_serial="1" don_prob="0.844" acc_prob="0.970">
            <gDNA_intron_boundary i_start="12180" i_stop="12100" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12099" e_stop="11829" e_length="271"/>
          </exon>
          <intron i_serial="2" don_prob="0.882" acc_prob="0.997">
            <gDNA_intron_boundary i_start="11828" i_stop="11462" i_length="367"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11461" e_stop="11062" e_length="400"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12184" stop="12181"/>
              <exon start="12099" stop="11829"/>
              <exon start="11461" stop="11062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12078" stop="11829"/>
              <exon start="11461" stop="11173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281709" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTG : ATGTGGCACATATGTACAGTAAATTCATTGGTCCACTACCTTCAACCGCTGAGGATTATGTATCTTCCCTTCAGAAGCTCTTTCCTACCATAGTGGACACCAAGATACTCTTGAATGCAAACGGTGTTTTTCGACAGACTTTAAATAAAAGCAACACCTCACTATCCAGAGCATTTGTCTCTATCTGTCCTCATATTGCTTTAGGTATCAAAACATCTAGTTTGGCTGATAGACCGTGTGTAGAAGTGGAGGTTCAAGTAGATGAAAAAAG : ATCCTCGAACTGGAACTCAGGAGCCAAGCATGAAGCTGGCTATGATGCATTCATGACTGGATGCATTTTTGCACAGGCGTGCAATCATCTAGGCATTGATTTCACCCTCCATGTGCTTGGTGGAGATTTAGCGAAGGATACAAAGCTTCAGAATTATATCAATCGCCTTTACCTTAGCTGGGTTAGTGGTAACGTCATTGATCTAAGTAGTGGGAAATGTACACCAGACTCCTCAGCTTCTAGCAACCTCAAAAGTCGGTACCAGGATATCTCATTTCCTAGCATCATTCTGTTGTGGGGATTTCCATCTAAACTAAAAGCAAGGGAGATAAAAGCTTGTATAACACAAGCCTTTGGCCCAAATCCTGTTTCTTCTGTCTACCACTTGGATGAAAGTGCT</gDNA_template>
            <first_frame> L   : D  V  A  H  M  Y  S  K  F  I  G  P  L  P  S  T  A  E  D  Y  V  S  S  L  Q  K  L  F  P  T  I  V  D  T  K  I  L  L  N  A  N  G  V  F  R  Q  T  L  N  K  S  N  T  S  L  S  R  A  F  V  S  I  C  P  H  I  A  L  G  I  K  T  S  S  L  A  D  R  P  C  V  E  V  E  V  Q  V  D  E  K  R :   S  S  N  W  N  S  G  A  K  H  E  A  G  Y  D  A  F  M  T  G  C  I  F  A  Q  A  C  N  H  L  G  I  D  F  T  L  H  V  L  G  G  D  L  A  K  D  T  K  L  Q  N  Y  I  N  R  L  Y  L  S  W  V  S  G  N  V  I  D  L  S  S  G  K  C  T  P  D  S  S  A  S  S  N  L  K  S  R  Y  Q  D  I  S  F  P  S  I  I  L  L  W  G  F  P  S  K  L  K  A  R  E  I  K  A  C  I  T  Q  A  F  G  P  N  P  V  S  S  V  Y  H  L  D  E  S  A </first_frame>
            <second_frame>  L  :  M  W  H  I  C  T  V  N  S  L  V  H  Y  L  Q  P  L  R  I  M  Y  L  P  F  R  S  S  F  L  P  *  W  T  P  R  Y  S  *  M  Q  T  V  F  F  D  R  L  *  I  K  A  T  P  H  Y  P  E  H  L  S  L  S  V  L  I  L  L  *  V  S  K  H  L  V  W  L  I  D  R  V  *  K  W  R  F  K  *  M  K  K   : D  P  R  T  G  T  Q  E  P  S  M  K  L  A  M  M  H  S  *  L  D  A  F  L  H  R  R  A  I  I  *  A  L  I  S  P  S  M  C  L  V  E  I  *  R  R  I  Q  S  F  R  I  I  S  I  A  F  T  L  A  G  L  V  V  T  S  L  I  *  V  V  G  N  V  H  Q  T  P  Q  L  L  A  T  S  K  V  G  T  R  I  S  H  F  L  A  S  F  C  C  G  D  F  H  L  N  *  K  Q  G  R  *  K  L  V  *  H  K  P  L  A  Q  I  L  F  L  L  S  T  T  W  M  K  V   </second_frame>
            <third_frame>   * :   C  G  T  Y  V  Q  *  I  H  W  S  T  T  F  N  R  *  G  L  C  I  F  P  S  E  A  L  S  Y  H  S  G  H  Q  D  T  L  E  C  K  R  C  F  S  T  D  F  K  *  K  Q  H  L  T  I  Q  S  I  C  L  Y  L  S  S  Y  C  F  R  Y  Q  N  I  *  F  G  *  *  T  V  C  R  S  G  G  S  S  R  *  K  K  :  I  L  E  L  E  L  R  S  Q  A  *  S  W  L  *  C  I  H  D  W  M  H  F  C  T  G  V  Q  S  S  R  H  *  F  H  P  P  C  A  W  W  R  F  S  E  G  Y  K  A  S  E  L  Y  Q  S  P  L  P  *  L  G  *  W  *  R  H  *  S  K  *  W  E  M  Y  T  R  L  L  S  F  *  Q  P  Q  K  S  V  P  G  Y  L  I  S  *  H  H  S  V  V  G  I  S  I  *  T  K  S  K  G  D  K  S  L  Y  N  T  S  L  W  P  K  S  C  F  F  C  L  P  L  G  *  K  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12184" stop="12181"/>
                    <exon start="12099" stop="11829"/>
                    <exon start="11461" stop="11062"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>675</number_coding_nucleotides>
                  <number_encoded_amino_acids>225</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDVAHMYSKFIGPLPSTAEDYVSSLQKLFPTIVDTKILLNANGVFRQTLNKSNTSLSRAFVSICPHIALGIKTSSLADRPCVEVEVQVDEKRSSNWNSGAKHEAGYDAFMTGCIFAQACNHLGIDFTLHVLGGDLAKDTKLQNYINRLYLSWVSGNVIDLSSGKCTPDSSASSNLKSRYQDISFPSIILLWGFPSKLKAREIKACITQAFGPNPVSSVYHLDESA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="15150" PGL_stop="14001"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15150" e_stop="14822"/>
            <exon e_start="14118" e_stop="14001"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15150" e_stop="14822" e_length="329"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="14821" i_stop="14119" i_length="703"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14118" e_stop="14001" e_length="118"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15150" stop="14822"/>
              <exon start="14118" stop="14001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15139" stop="14822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201468" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTTATCCCACGCTCCGACCACCATTTTCACTACGCGCCGCCGCACACTCTCATCATCTTCTTCCTTCGATATTAAGAATGTTACCAAATCAAACTTCGAATCAGCTCTCAAGGACCTTCGAGGTCTTCTACGGGACGCCGATTTCGTAGCTGTAGACTTGGAAATGACCGGAGTCACCAGTGCTCCTTGGAGAGAATCATTCGATTACGACCGGTATGATATTAGCTACCTGAAAGTTAAGGACTCCGCCGAGAAGTTCGCCGTCGTTCAGTTCGGCGTTTGTCCCTTCCGGTGGGATCCTCACAAGCAATCCTTCATCGCTCATCC : ACACAACTTCTACATATTCCCACGGCAAGAAATTCCTGGTAGCAACCAATCCCGTGAGTTCCTTTGCCAGACAACATCACTTGATTTCTTGGCAAAATACCAGTTTGATTTCAATCTG</gDNA_template>
            <first_frame> H  L  S  H  A  P  T  T  I  F  T  T  R  R  R  T  L  S  S  S  S  S  F  D  I  K  N  V  T  K  S  N  F  E  S  A  L  K  D  L  R  G  L  L  R  D  A  D  F  V  A  V  D  L  E  M  T  G  V  T  S  A  P  W  R  E  S  F  D  Y  D  R  Y  D  I  S  Y  L  K  V  K  D  S  A  E  K  F  A  V  V  Q  F  G  V  C  P  F  R  W  D  P  H  K  Q  S  F  I  A  H  P :   H  N  F  Y  I  F  P  R  Q  E  I  P  G  S  N  Q  S  R  E  F  L  C  Q  T  T  S  L  D  F  L  A  K  Y  Q  F  D  F  N  L </first_frame>
            <second_frame>  I  Y  P  T  L  R  P  P  F  S  L  R  A  A  A  H  S  H  H  L  L  P  S  I  L  R  M  L  P  N  Q  T  S  N  Q  L  S  R  T  F  E  V  F  Y  G  T  P  I  S  *  L  *  T  W  K  *  P  E  S  P  V  L  L  G  E  N  H  S  I  T  T  G  M  I  L  A  T  *  K  L  R  T  P  P  R  S  S  P  S  F  S  S  A  F  V  P  S  G  G  I  L  T  S  N  P  S  S  L  I   : H  T  T  S  T  Y  S  H  G  K  K  F  L  V  A  T  N  P  V  S  S  F  A  R  Q  H  H  L  I  S  W  Q  N  T  S  L  I  S  I   </second_frame>
            <third_frame>   F  I  P  R  S  D  H  H  F  H  Y  A  P  P  H  T  L  I  I  F  F  L  R  Y  *  E  C  Y  Q  I  K  L  R  I  S  S  Q  G  P  S  R  S  S  T  G  R  R  F  R  S  C  R  L  G  N  D  R  S  H  Q  C  S  L  E  R  I  I  R  L  R  P  V  *  Y  *  L  P  E  S  *  G  L  R  R  E  V  R  R  R  S  V  R  R  L  S  L  P  V  G  S  S  Q  A  I  L  H  R  S  S  :  T  Q  L  L  H  I  P  T  A  R  N  S  W  *  Q  P  I  P  *  V  P  L  P  D  N  I  T  *  F  L  G  K  I  P  V  *  F  Q  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15150" stop="14822"/>
                    <exon start="14118" stop="14001"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLSHAPTTIFTTRRRTLSSSSSFDIKNVTKSNFESALKDLRGLLRDADFVAVDLEMTGVTSAPWRESFDYDRYDISYLKVKDSAEKFAVVQFGVCPFRWDPHKQSFIAHPHNFYIFPRQEIPGSNQSREFLCQTTSLDFLAKYQFDFNL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="27296" PGL_stop="32910"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27296" e_stop="27592"/>
            <exon e_start="27764" e_stop="27965"/>
            <exon e_start="28045" e_stop="28331"/>
            <exon e_start="28429" e_stop="28742"/>
            <exon e_start="28878" e_stop="30015"/>
            <exon e_start="30110" e_stop="30256"/>
            <exon e_start="30345" e_stop="30425"/>
            <exon e_start="30577" e_stop="30802"/>
            <exon e_start="30886" e_stop="31025"/>
            <exon e_start="31464" e_stop="31570"/>
            <exon e_start="31701" e_stop="31873"/>
            <exon e_start="32521" e_stop="32910"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.964" e_score="0.987"/>
          <exon-intron don_prob="0.573" acc_prob="0.914" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.271" e_score="1.000"/>
          <exon-intron don_prob="0.561" acc_prob="0.996" e_score="0.997"/>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.972" e_score="0.988"/>
          <exon-intron don_prob="0.990" acc_prob="0.988" e_score="0.991"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.850" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.918" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="27296" e_stop="27592" e_length="297"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.964">
            <gDNA_intron_boundary i_start="27593" i_stop="27763" i_length="171"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27764" e_stop="27965" e_length="202"/>
          </exon>
          <intron i_serial="2" don_prob="0.573" acc_prob="0.914">
            <gDNA_intron_boundary i_start="27966" i_stop="28044" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28045" e_stop="28331" e_length="287"/>
          </exon>
          <intron i_serial="3" don_prob="0.951" acc_prob="0.992">
            <gDNA_intron_boundary i_start="28332" i_stop="28428" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28429" e_stop="28742" e_length="314"/>
          </exon>
          <intron i_serial="4" don_prob="0.975" acc_prob="0.271">
            <gDNA_intron_boundary i_start="28743" i_stop="28877" i_length="135"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="28878" e_stop="30015" e_length="1138"/>
          </exon>
          <intron i_serial="5" don_prob="0.561" acc_prob="0.996">
            <gDNA_intron_boundary i_start="30016" i_stop="30109" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30110" e_stop="30256" e_length="147"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="30257" i_stop="30344" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="0.988">
            <gDNA_exon_boundary e_start="30345" e_stop="30425" e_length="81"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.972">
            <gDNA_intron_boundary i_start="30426" i_stop="30576" i_length="151"/>
          </intron>
          <exon e_serial="8" e_score="0.991">
            <gDNA_exon_boundary e_start="30577" e_stop="30802" e_length="226"/>
          </exon>
          <intron i_serial="8" don_prob="0.990" acc_prob="0.988">
            <gDNA_intron_boundary i_start="30803" i_stop="30885" i_length="83"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="30886" e_stop="31025" e_length="140"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="31026" i_stop="31463" i_length="438"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="31464" e_stop="31570" e_length="107"/>
          </exon>
          <intron i_serial="10" don_prob="0.986" acc_prob="0.850">
            <gDNA_intron_boundary i_start="31571" i_stop="31700" i_length="130"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="31701" e_stop="31873" e_length="173"/>
          </exon>
          <intron i_serial="11" don_prob="0.959" acc_prob="0.918">
            <gDNA_intron_boundary i_start="31874" i_stop="32520" i_length="647"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="32521" e_stop="32910" e_length="390"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27296" stop="27592"/>
              <exon start="27764" stop="27965"/>
              <exon start="28045" stop="28239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27515" stop="27592"/>
              <exon start="27764" stop="27965"/>
              <exon start="28045" stop="28331"/>
              <exon start="28429" stop="28589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27888" stop="27965"/>
              <exon start="28045" stop="28331"/>
              <exon start="28429" stop="28742"/>
              <exon start="28878" stop="28963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28160" stop="28331"/>
              <exon start="28429" stop="28703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28176" stop="28331"/>
              <exon start="28429" stop="28742"/>
              <exon start="28878" stop="29126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28177" stop="28331"/>
              <exon start="28429" stop="28440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28278" stop="28331"/>
              <exon start="28429" stop="28742"/>
              <exon start="28878" stop="29340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29220" stop="30015"/>
              <exon start="30110" stop="30126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30115" stop="30256"/>
              <exon start="30345" stop="30425"/>
              <exon start="30577" stop="30802"/>
              <exon start="30886" stop="30938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30918" stop="31025"/>
              <exon start="31464" stop="31570"/>
              <exon start="31701" stop="31873"/>
              <exon start="32521" stop="32747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31465" stop="31570"/>
              <exon start="31701" stop="31873"/>
              <exon start="32521" stop="32910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373755" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31466" stop="31570"/>
              <exon start="31701" stop="31873"/>
              <exon start="32521" stop="32910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31466" stop="31570"/>
              <exon start="31701" stop="31873"/>
              <exon start="32521" stop="32553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290562" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTGTTTTGTCAGCATTGCCATCTACGTTACTCGCTGAAGCGCAAATGCTTCGGGACAGAGCTATGAGTCATTACCAAGCACGCAGCTTGTTTGGAGGCAGCCACAGGCTTCATGGTCGTAGAAATGGTCTGGGATTTGACAGACAGACAGTTATGGACAGGGGTGTGGGTGTTACAATTGCCCGGAGGGCTTCATCCTCTTTTTCAGAGAGTTTGAAGTTGAAGGAACTTGAAGGCGAGCCACTTTTAGATGCTCATGGCTTGAAAGCATTGATCCGCCTCTTGCGCTTAGCACAG : CCTCTTGGGAAAGGTCTGTTGCAAAGACTCTTGTTGAATTTGTCTGCTCATAGCAGTACAAGAGCAGTTCTAGTCCACCTTCTTCTTGAAGCTATCAAGCCCGAGACTGGAGGGGCTGGTGGTGGTTTAACAACCATTAACTCACAGAGACTTTATGGCTGTCAGTCGAATATTGTTTATGGACGATCACAATTATTTGATG : GTCTTCCTCCACTGGTATTGCGGCGGATTCTGGAGATCTTAACTTACCTTGCTACCAACCACTCTGCAGTTGCCAGTCTTCTTTTCTACTTTGATCTCTCGCTTATTCCAGAGTGGTCAGATGTGAAGTGTTTGGAAAATAAGAGGGACAAAGGCAAGGAGAAAATTGTTGAAGAAGATCCCTCCAATCCTTTTAGAAGCTCTAACAAGAGGGATATTCCATTGGTTTTGTTTCTGAAGCTCTTGAACCAGCCACTTTTTTTGCGCAGCATAGCACATCTTGAACAG : GTCATGGGACTCCTTCAAGTAGTTGTCTATACTGCTGCATCCAAGATGGAGTGTCAGTCTCATTCTGAAGAAACAGTAGACCGTTCTCATAATGAAACAGTAGAGGGTTCTAATAATCCTGATGGCAATGAAACTATGAGTGATATACAGAAAGATCCTGCGTTGCCAGACATAAAGTCCCCTCAAGATGATAGCGGCACTGGTTCTGCCAACCCTGCATCTGATGCCAATGGAAGCACAATCATTCATGACATCTTCTTGCAGCTGCCACATTCTGATTTGCACAATCTTTGCTGTCTTCTTGGTCATGAAGG : ACTCTCAGATAAAGTTTACATGCTTGCGGGTGAGGTGTTGAAGAAGCTAGCCTCAGTTGCTGCTCCCCATCGGAAGTTCTTCATTTCTGAACTTTCAGAGTTGACTCAAAGGCTGAGCAAGTCAGCTGTGGAAGAGCTTATCACACTTAAGAATACACACATGCTGGGATTGAGCGCTGGATCTATGGCTGGAGCTGCGGTCCTTCGTGTACTACAGACTCTTAGTTCACTAAGTACAGCTTCTGCTGATGGCAATACAGACACATCTATGGAGGAAGAACATGATGAGCATAACATCATGTGGAAGTTAAATGTTGCACTAGAACCTTTGTGGGAAGGCCTGAGTGAATGCATAGGCACCATGGAGTTAGAGCTCACCCAGAGCACTTCTTCTTCAGTTATGTCAAGTACCAACACTGGGGAGCATATAAATGAAGCCGGTGCTTCATCTGTATCTTCTCCATTGCCCCCTGGAACTCAGCGTCTGTTACCTTTTATTGAGGCTTTCTTTGTTCTGTGTGAGAAGCTTCAGGCAAACATCTCTATTATGCAGCAAGATCATATGAATGCAACTGCAAGAGAAGTGAAAGAGTTAGCCGGTACTTCAGTCAAGTTGTCCTCCAAGTCTGTTGGTGATTCACATAAAAGAGTAGATGGTGCTGTAACATTTGTAAGATTTGCGGAAAAGCATAGGCGCTTGCTTAACGCTTTTGTCAGGCAGAACCCCGGCTTACTGGAGAAATCACTTTGTGTGATGCTGAAAGCCCCACGGCTCATTGATTTTGACAATAAAAGAGCTTATTTTCGCTCGAGAATAAGGCAGCAGCATGAACAGCACCTCTCAGGTCCTCTGCGAATTAGCGTTCGGCGGGCTTATGTGTTGGAGGATTCTTATAATCAGTTGCGTATGCGACCCAATCAAGACCTGAAAGGACGGTTAAATGTGCATTTTCAAGGTGAAGAGGGTATTGATGCTGGTGGTTTGACGAGAGAGTGGTATCAATTGCTATCAAGGGTCATATTTGACAAAGGAGCTTTGCTGTTTACGACTGTTGGGAATAATGCAACTTTCCAACCTAACCCAAACTCTGTTTATCAAACTGAACATCTCTCATACTTCAAATTTGTAGGCCGTGTG : GTTGCTAAAGCACTATTTGACGGGCAGTTGCTGGATGTTCATTTTACCCGGTCATTCTACAAACATATCCTTGGTGTGAAGGTCACATATCATGATATAGAGGCTGTCGATCCTGATTACTATAAGAACTTGAAGTGGATGCTGGAG : AATGATGTGAGTGATATACCAGATTTGACTTTTAGCATGGATGCAGATGAGGAAAAACTCATTCTTTATGAGAAAACAGAG : GTTACTGATTATGAGCTTAAACCTGGAGGAAGAAATATAAGGGTCACAGAAGAGACAAAGCACGAATATGTTGATCTCGTTGCTGACCATATTCTGACAAATGCTATTCGCCCTCAAATAAATGCATTCCTTGAAGGTTTCAGTGAATTGGTACCACGTGAACTTATCTCCATTTTCAATGATAAGGAGCTTGAACTTTTGATAAGTGGTCTACCAGAAATTGACA : TGGAAGATCTGAAGGCCAACACTGAATATACTGGATATACCACGGCATCTACTGCTATTCAGTGGTTTTGGGAGGTCGTTAAAGGTTTTAGCAAGGAAGACATGGCAAGATTTCTTCAATTTGTGACCGGCACATCCAAG : GTTCCTTTGGAGGGTTTCAAAGCATTGCAAGGGATCTCTGGCCCTCAGAGATTTCAGATTCACAAAGCTTATGGAGCTCCTGAGAGGCTCCCATCTGCACATACCTG : CTTCAACCAACTTGACCTTCCGGAGTATACTTCCAAAGAACAACTTCAAGAACGTTTGCTTTTGGCTATCCATGAGGCTAGTGAAGGATTTGGTTTTGGTTGAGACAAGCTTACCTTGTGCAGATTTCCTGAAAATTGCATATATTTGATCACCCTGTGATTGCCATGTAAAT : ACTGGCTGATCGATATCAACTGCACAAGATAGATTTGGAGTGGTATTTCTTAGAAATTTGAGTCCATGCAGAGCCTGCCTCAAGGATGTGTAGGTAGTTGGCCACACCACTCTGGTCAGTTTAGTATCTTGAGGGTAGTGAGTTATGCATTACAAGTGGTGAGGAGCTCTGTTATTTTGTTGTTCCTTCCATTGCGATAGGACACTCCTACAGCCATCCCCGTGTAGATAAGTCGGTTCTCTTTTTGTCAGGGGGTTTAGTGTAGGAGGTCTACATTTATTTTGGGAAATGGGTAGGTTGCTAATTCTTTCATGCTTTACAACCTCATTAGTTACCTATGGTCACCGATAACTCTTACATCACCTTATAATGCTATACTTCACATCTGGT</gDNA_template>
            <first_frame> A  V  L  S  A  L  P  S  T  L  L  A  E  A  Q  M  L  R  D  R  A  M  S  H  Y  Q  A  R  S  L  F  G  G  S  H  R  L  H  G  R  R  N  G  L  G  F  D  R  Q  T  V  M  D  R  G  V  G  V  T  I  A  R  R  A  S  S  S  F  S  E  S  L  K  L  K  E  L  E  G  E  P  L  L  D  A  H  G  L  K  A  L  I  R  L  L  R  L  A  Q  :  P  L  G  K  G  L  L  Q  R  L  L  L  N  L  S  A  H  S  S  T  R  A  V  L  V  H  L  L  L  E  A  I  K  P  E  T  G  G  A  G  G  G  L  T  T  I  N  S  Q  R  L  Y  G  C  Q  S  N  I  V  Y  G  R  S  Q  L  F  D   : G  L  P  P  L  V  L  R  R  I  L  E  I  L  T  Y  L  A  T  N  H  S  A  V  A  S  L  L  F  Y  F  D  L  S  L  I  P  E  W  S  D  V  K  C  L  E  N  K  R  D  K  G  K  E  K  I  V  E  E  D  P  S  N  P  F  R  S  S  N  K  R  D  I  P  L  V  L  F  L  K  L  L  N  Q  P  L  F  L  R  S  I  A  H  L  E  Q  :  V  M  G  L  L  Q  V  V  V  Y  T  A  A  S  K  M  E  C  Q  S  H  S  E  E  T  V  D  R  S  H  N  E  T  V  E  G  S  N  N  P  D  G  N  E  T  M  S  D  I  Q  K  D  P  A  L  P  D  I  K  S  P  Q  D  D  S  G  T  G  S  A  N  P  A  S  D  A  N  G  S  T  I  I  H  D  I  F  L  Q  L  P  H  S  D  L  H  N  L  C  C  L  L  G  H  E  G :   L  S  D  K  V  Y  M  L  A  G  E  V  L  K  K  L  A  S  V  A  A  P  H  R  K  F  F  I  S  E  L  S  E  L  T  Q  R  L  S  K  S  A  V  E  E  L  I  T  L  K  N  T  H  M  L  G  L  S  A  G  S  M  A  G  A  A  V  L  R  V  L  Q  T  L  S  S  L  S  T  A  S  A  D  G  N  T  D  T  S  M  E  E  E  H  D  E  H  N  I  M  W  K  L  N  V  A  L  E  P  L  W  E  G  L  S  E  C  I  G  T  M  E  L  E  L  T  Q  S  T  S  S  S  V  M  S  S  T  N  T  G  E  H  I  N  E  A  G  A  S  S  V  S  S  P  L  P  P  G  T  Q  R  L  L  P  F  I  E  A  F  F  V  L  C  E  K  L  Q  A  N  I  S  I  M  Q  Q  D  H  M  N  A  T  A  R  E  V  K  E  L  A  G  T  S  V  K  L  S  S  K  S  V  G  D  S  H  K  R  V  D  G  A  V  T  F  V  R  F  A  E  K  H  R  R  L  L  N  A  F  V  R  Q  N  P  G  L  L  E  K  S  L  C  V  M  L  K  A  P  R  L  I  D  F  D  N  K  R  A  Y  F  R  S  R  I  R  Q  Q  H  E  Q  H  L  S  G  P  L  R  I  S  V  R  R  A  Y  V  L  E  D  S  Y  N  Q  L  R  M  R  P  N  Q  D  L  K  G  R  L  N  V  H  F  Q  G  E  E  G  I  D  A  G  G  L  T  R  E  W  Y  Q  L  L  S  R  V  I  F  D  K  G  A  L  L  F  T  T  V  G  N  N  A  T  F  Q  P  N  P  N  S  V  Y  Q  T  E  H  L  S  Y  F  K  F  V  G  R  V  :  V  A  K  A  L  F  D  G  Q  L  L  D  V  H  F  T  R  S  F  Y  K  H  I  L  G  V  K  V  T  Y  H  D  I  E  A  V  D  P  D  Y  Y  K  N  L  K  W  M  L  E  :  N  D  V  S  D  I  P  D  L  T  F  S  M  D  A  D  E  E  K  L  I  L  Y  E  K  T  E  :  V  T  D  Y  E  L  K  P  G  G  R  N  I  R  V  T  E  E  T  K  H  E  Y  V  D  L  V  A  D  H  I  L  T  N  A  I  R  P  Q  I  N  A  F  L  E  G  F  S  E  L  V  P  R  E  L  I  S  I  F  N  D  K  E  L  E  L  L  I  S  G  L  P  E  I  D   : M  E  D  L  K  A  N  T  E  Y  T  G  Y  T  T  A  S  T  A  I  Q  W  F  W  E  V  V  K  G  F  S  K  E  D  M  A  R  F  L  Q  F  V  T  G  T  S  K  :  V  P  L  E  G  F  K  A  L  Q  G  I  S  G  P  Q  R  F  Q  I  H  K  A  Y  G  A  P  E  R  L  P  S  A  H  T  C :   F  N  Q  L  D  L  P  E  Y  T  S  K  E  Q  L  Q  E  R  L  L  L  A  I  H  E  A  S  E  G  F  G  F  G  *  D  K  L  T  L  C  R  F  P  E  N  C  I  Y  L  I  T  L  *  L  P  C  K   : Y  W  L  I  D  I  N  C  T  R  *  I  W  S  G  I  S  *  K  F  E  S  M  Q  S  L  P  Q  G  C  V  G  S  W  P  H  H  S  G  Q  F  S  I  L  R  V  V  S  Y  A  L  Q  V  V  R  S  S  V  I  L  L  F  L  P  L  R  *  D  T  P  T  A  I  P  V  *  I  S  R  F  S  F  C  Q  G  V  *  C  R  R  S  T  F  I  L  G  N  G  *  V  A  N  S  F  M  L  Y  N  L  I  S  Y  L  W  S  P  I  T  L  T  S  P  Y  N  A  I  L  H  I  W  </first_frame>
            <second_frame>  L  F  C  Q  H  C  H  L  R  Y  S  L  K  R  K  C  F  G  T  E  L  *  V  I  T  K  H  A  A  C  L  E  A  A  T  G  F  M  V  V  E  M  V  W  D  L  T  D  R  Q  L  W  T  G  V  W  V  L  Q  L  P  G  G  L  H  P  L  F  Q  R  V  *  S  *  R  N  L  K  A  S  H  F  *  M  L  M  A  *  K  H  *  S  A  S  C  A  *  H  S :   L  L  G  K  V  C  C  K  D  S  C  *  I  C  L  L  I  A  V  Q  E  Q  F  *  S  T  F  F  L  K  L  S  S  P  R  L  E  G  L  V  V  V  *  Q  P  L  T  H  R  D  F  M  A  V  S  R  I  L  F  M  D  D  H  N  Y  L  M  :  V  F  L  H  W  Y  C  G  G  F  W  R  S  *  L  T  L  L  P  T  T  L  Q  L  P  V  F  F  S  T  L  I  S  R  L  F  Q  S  G  Q  M  *  S  V  W  K  I  R  G  T  K  A  R  R  K  L  L  K  K  I  P  P  I  L  L  E  A  L  T  R  G  I  F  H  W  F  C  F  *  S  S  *  T  S  H  F  F  C  A  A  *  H  I  L  N  R :   S  W  D  S  F  K  *  L  S  I  L  L  H  P  R  W  S  V  S  L  I  L  K  K  Q  *  T  V  L  I  M  K  Q  *  R  V  L  I  I  L  M  A  M  K  L  *  V  I  Y  R  K  I  L  R  C  Q  T  *  S  P  L  K  M  I  A  A  L  V  L  P  T  L  H  L  M  P  M  E  A  Q  S  F  M  T  S  S  C  S  C  H  I  L  I  C  T  I  F  A  V  F  L  V  M  K   : D  S  Q  I  K  F  T  C  L  R  V  R  C  *  R  S  *  P  Q  L  L  L  P  I  G  S  S  S  F  L  N  F  Q  S  *  L  K  G  *  A  S  Q  L  W  K  S  L  S  H  L  R  I  H  T  C  W  D  *  A  L  D  L  W  L  E  L  R  S  F  V  Y  Y  R  L  L  V  H  *  V  Q  L  L  L  M  A  I  Q  T  H  L  W  R  K  N  M  M  S  I  T  S  C  G  S  *  M  L  H  *  N  L  C  G  K  A  *  V  N  A  *  A  P  W  S  *  S  S  P  R  A  L  L  L  Q  L  C  Q  V  P  T  L  G  S  I  *  M  K  P  V  L  H  L  Y  L  L  H  C  P  L  E  L  S  V  C  Y  L  L  L  R  L  S  L  F  C  V  R  S  F  R  Q  T  S  L  L  C  S  K  I  I  *  M  Q  L  Q  E  K  *  K  S  *  P  V  L  Q  S  S  C  P  P  S  L  L  V  I  H  I  K  E  *  M  V  L  *  H  L  *  D  L  R  K  S  I  G  A  C  L  T  L  L  S  G  R  T  P  A  Y  W  R  N  H  F  V  *  C  *  K  P  H  G  S  L  I  L  T  I  K  E  L  I  F  A  R  E  *  G  S  S  M  N  S  T  S  Q  V  L  C  E  L  A  F  G  G  L  M  C  W  R  I  L  I  I  S  C  V  C  D  P  I  K  T  *  K  D  G  *  M  C  I  F  K  V  K  R  V  L  M  L  V  V  *  R  E  S  G  I  N  C  Y  Q  G  S  Y  L  T  K  E  L  C  C  L  R  L  L  G  I  M  Q  L  S  N  L  T  Q  T  L  F  I  K  L  N  I  S  H  T  S  N  L  *  A  V  W :   L  L  K  H  Y  L  T  G  S  C  W  M  F  I  L  P  G  H  S  T  N  I  S  L  V  *  R  S  H  I  M  I  *  R  L  S  I  L  I  T  I  R  T  *  S  G  C  W  R :   M  M  *  V  I  Y  Q  I  *  L  L  A  W  M  Q  M  R  K  N  S  F  F  M  R  K  Q  R :   L  L  I  M  S  L  N  L  E  E  E  I  *  G  S  Q  K  R  Q  S  T  N  M  L  I  S  L  L  T  I  F  *  Q  M  L  F  A  L  K  *  M  H  S  L  K  V  S  V  N  W  Y  H  V  N  L  S  P  F  S  M  I  R  S  L  N  F  *  *  V  V  Y  Q  K  L  T  :  W  K  I  *  R  P  T  L  N  I  L  D  I  P  R  H  L  L  L  F  S  G  F  G  R  S  L  K  V  L  A  R  K  T  W  Q  D  F  F  N  L  *  P  A  H  P  R :   F  L  W  R  V  S  K  H  C  K  G  S  L  A  L  R  D  F  R  F  T  K  L  M  E  L  L  R  G  S  H  L  H  I  P   : A  S  T  N  L  T  F  R  S  I  L  P  K  N  N  F  K  N  V  C  F  W  L  S  M  R  L  V  K  D  L  V  L  V  E  T  S  L  P  C  A  D  F  L  K  I  A  Y  I  *  S  P  C  D  C  H  V  N  :  T  G  *  S  I  S  T  A  Q  D  R  F  G  V  V  F  L  R  N  L  S  P  C  R  A  C  L  K  D  V  *  V  V  G  H  T  T  L  V  S  L  V  S  *  G  *  *  V  M  H  Y  K  W  *  G  A  L  L  F  C  C  S  F  H  C  D  R  T  L  L  Q  P  S  P  C  R  *  V  G  S  L  F  V  R  G  F  S  V  G  G  L  H  L  F  W  E  M  G  R  L  L  I  L  S  C  F  T  T  S  L  V  T  Y  G  H  R  *  L  L  H  H  L  I  M  L  Y  F  T  S  G </second_frame>
            <third_frame>   C  F  V  S  I  A  I  Y  V  T  R  *  S  A  N  A  S  G  Q  S  Y  E  S  L  P  S  T  Q  L  V  W  R  Q  P  Q  A  S  W  S  *  K  W  S  G  I  *  Q  T  D  S  Y  G  Q  G  C  G  C  Y  N  C  P  E  G  F  I  L  F  F  R  E  F  E  V  E  G  T  *  R  R  A  T  F  R  C  S  W  L  E  S  I  D  P  P  L  A  L  S  T   : A  S  W  E  R  S  V  A  K  T  L  V  E  F  V  C  S  *  Q  Y  K  S  S  S  S  P  P  S  S  *  S  Y  Q  A  R  D  W  R  G  W  W  W  F  N  N  H  *  L  T  E  T  L  W  L  S  V  E  Y  C  L  W  T  I  T  I  I  *  W :   S  S  S  T  G  I  A  A  D  S  G  D  L  N  L  P  C  Y  Q  P  L  C  S  C  Q  S  S  F  L  L  *  S  L  A  Y  S  R  V  V  R  C  E  V  F  G  K  *  E  G  Q  R  Q  G  E  N  C  *  R  R  S  L  Q  S  F  *  K  L  *  Q  E  G  Y  S  I  G  F  V  S  E  A  L  E  P  A  T  F  F  A  Q  H  S  T  S  *  T   : G  H  G  T  P  S  S  S  C  L  Y  C  C  I  Q  D  G  V  S  V  S  F  *  R  N  S  R  P  F  S  *  *  N  S  R  G  F  *  *  S  *  W  Q  *  N  Y  E  *  Y  T  E  R  S  C  V  A  R  H  K  V  P  S  R  *  *  R  H  W  F  C  Q  P  C  I  *  C  Q  W  K  H  N  H  S  *  H  L  L  A  A  A  T  F  *  F  A  Q  S  L  L  S  S  W  S  *  R  :  T  L  R  *  S  L  H  A  C  G  *  G  V  E  E  A  S  L  S  C  C  S  P  S  E  V  L  H  F  *  T  F  R  V  D  S  K  A  E  Q  V  S  C  G  R  A  Y  H  T  *  E  Y  T  H  A  G  I  E  R  W  I  Y  G  W  S  C  G  P  S  C  T  T  D  S  *  F  T  K  Y  S  F  C  *  W  Q  Y  R  H  I  Y  G  G  R  T  *  *  A  *  H  H  V  E  V  K  C  C  T  R  T  F  V  G  R  P  E  *  M  H  R  H  H  G  V  R  A  H  P  E  H  F  F  F  S  Y  V  K  Y  Q  H  W  G  A  Y  K  *  S  R  C  F  I  C  I  F  S  I  A  P  W  N  S  A  S  V  T  F  Y  *  G  F  L  C  S  V  *  E  A  S  G  K  H  L  Y  Y  A  A  R  S  Y  E  C  N  C  K  R  S  E  R  V  S  R  Y  F  S  Q  V  V  L  Q  V  C  W  *  F  T  *  K  S  R  W  C  C  N  I  C  K  I  C  G  K  A  *  A  L  A  *  R  F  C  Q  A  E  P  R  L  T  G  E  I  T  L  C  D  A  E  S  P  T  A  H  *  F  *  Q  *  K  S  L  F  S  L  E  N  K  A  A  A  *  T  A  P  L  R  S  S  A  N  *  R  S  A  G  L  C  V  G  G  F  L  *  S  V  A  Y  A  T  Q  S  R  P  E  R  T  V  K  C  A  F  S  R  *  R  G  Y  *  C  W  W  F  D  E  R  V  V  S  I  A  I  K  G  H  I  *  Q  R  S  F  A  V  Y  D  C  W  E  *  C  N  F  P  T  *  P  K  L  C  L  S  N  *  T  S  L  I  L  Q  I  C  R  P  C   : G  C  *  S  T  I  *  R  A  V  A  G  C  S  F  Y  P  V  I  L  Q  T  Y  P  W  C  E  G  H  I  S  *  Y  R  G  C  R  S  *  L  L  *  E  L  E  V  D  A  G   : E  *  C  E  *  Y  T  R  F  D  F  *  H  G  C  R  *  G  K  T  H  S  L  *  E  N  R   : G  Y  *  L  *  A  *  T  W  R  K  K  Y  K  G  H  R  R  D  K  A  R  I  C  *  S  R  C  *  P  Y  S  D  K  C  Y  S  P  S  N  K  C  I  P  *  R  F  Q  *  I  G  T  T  *  T  Y  L  H  F  Q  *  *  G  A  *  T  F  D  K  W  S  T  R  N  *  H :   G  R  S  E  G  Q  H  *  I  Y  W  I  Y  H  G  I  Y  C  Y  S  V  V  L  G  G  R  *  R  F  *  Q  G  R  H  G  K  I  S  S  I  C  D  R  H  I  Q   : G  S  F  G  G  F  Q  S  I  A  R  D  L  W  P  S  E  I  S  D  S  Q  S  L  W  S  S  *  E  A  P  I  C  T  Y  L  :  L  Q  P  T  *  P  S  G  V  Y  F  Q  R  T  T  S  R  T  F  A  F  G  Y  P  *  G  *  *  R  I  W  F  W  L  R  Q  A  Y  L  V  Q  I  S  *  K  L  H  I  F  D  H  P  V  I  A  M  *  I :   L  A  D  R  Y  Q  L  H  K  I  D  L  E  W  Y  F  L  E  I  *  V  H  A  E  P  A  S  R  M  C  R  *  L  A  T  P  L  W  S  V  *  Y  L  E  G  S  E  L  C  I  T  S  G  E  E  L  C  Y  F  V  V  P  S  I  A  I  G  H  S  Y  S  H  P  R  V  D  K  S  V  L  F  L  S  G  G  L  V  *  E  V  Y  I  Y  F  G  K  W  V  G  C  *  F  F  H  A  L  Q  P  H  *  L  P  M  V  T  D  N  S  Y  I  T  L  *  C  Y  T  S  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27296" stop="27592"/>
                    <exon start="27764" stop="27965"/>
                    <exon start="28045" stop="28331"/>
                    <exon start="28429" stop="28742"/>
                    <exon start="28878" stop="30015"/>
                    <exon start="30110" stop="30256"/>
                    <exon start="30345" stop="30425"/>
                    <exon start="30577" stop="30802"/>
                    <exon start="30886" stop="31025"/>
                    <exon start="31464" stop="31570"/>
                    <exon start="31701" stop="31803"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>3039</number_coding_nucleotides>
                  <number_encoded_amino_acids>1013</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVLSALPSTLLAEAQMLRDRAMSHYQARSLFGGSHRLHGRRNGLGFDRQTVMDRGVGVTIARRASSSFSESLKLKELEGEPLLDAHGLKALIRLLRLAQPLGKGLLQRLLLNLSAHSSTRAVLVHLLLEAIKPETGGAGGGLTTINSQRLYGCQSNIVYGRSQLFDGLPPLVLRRILEILTYLATNHSAVASLLFYFDLSLIPEWSDVKCLENKRDKGKEKIVEEDPSNPFRSSNKRDIPLVLFLKLLNQPLFLRSIAHLEQVMGLLQVVVYTAASKMECQSHSEETVDRSHNETVEGSNNPDGNETMSDIQKDPALPDIKSPQDDSGTGSANPASDANGSTIIHDIFLQLPHSDLHNLCCLLGHEGLSDKVYMLAGEVLKKLASVAAPHRKFFISELSELTQRLSKSAVEELITLKNTHMLGLSAGSMAGAAVLRVLQTLSSLSTASADGNTDTSMEEEHDEHNIMWKLNVALEPLWEGLSECIGTMELELTQSTSSSVMSSTNTGEHINEAGASSVSSPLPPGTQRLLPFIEAFFVLCEKLQANISIMQQDHMNATAREVKELAGTSVKLSSKSVGDSHKRVDGAVTFVRFAEKHRRLLNAFVRQNPGLLEKSLCVMLKAPRLIDFDNKRAYFRSRIRQQHEQHLSGPLRISVRRAYVLEDSYNQLRMRPNQDLKGRLNVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNNATFQPNPNSVYQTEHLSYFKFVGRVVAKALFDGQLLDVHFTRSFYKHILGVKVTYHDIEAVDPDYYKNLKWMLENDVSDIPDLTFSMDADEEKLILYEKTEVTDYELKPGGRNIRVTEETKHEYVDLVADHILTNAIRPQINAFLEGFSELVPRELISIFNDKELELLISGLPEIDMEDLKANTEYTGYTTASTAIQWFWEVVKGFSKEDMARFLQFVTGTSKVPLEGFKALQGISGPQRFQIHKAYGAPERLPSAHTCFNQLDLPEYTSKEQLQERLLLAIHEASEGFGFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="29693" PGL_stop="28867"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29693" e_stop="28867"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="29693" e_stop="28867" e_length="827"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29693" stop="28867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29577" stop="29195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548359" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCTCGAGCGAAAATAAGCTCTTTTATTGTCAAAATCAATGAGCCGTGGGGCTTTCAGCATCACACAAAGTGATTTCTCCAGTAAGCCGGGGTTCTGCCTGACAAAAGCGTTAAGCAAGCGCCTATGCTTTTCCGCAAATCTTACAAATGTTACAGCACCATCTACTCTTTTATGTGAATCACCAACAGACTTGGAGGACAACTTGACTGAAGTACCGGCTAACTCTTTCACTTCTCTTGCAGTTGCATTCATATGATCTTGCTGCATAATAGAGATGTTTGCCTGAAGCTTCTCACACAGAACAAAGAAAGCCTCAATAAAAGGTAACAGACGCTGAGTTCCAGGGGGCAATGGAGAAGATACAGATGAAGCACCGGCTTCATTTATATGCTCCCCAGTGTTGGTACTTGACATAACTGAAGAAGAAGTGCTCTGGGTGAGCTCTAACTCCATGGTGCCTATGCATTCACTCAGGCCTTCCCACAAAGGTTCTAGTGCAACATTTAACTTCCACATGATGTTATGCTCATCATGTTCTTCCTCCATAGATGTGTCTGTATTGCCATCAGCAGAAGCTGTACTTAGTGAACTAAGAGTCTGTAGTACACGAAGGACCGCAGCTCCAGCCATAGATCCAGCGCTCAATCCCAGCATGTGTGTATTCTTAAGTGTGATAAGCTCTTCCACAGCTGACTTGCTCAGCCTTTGAGTCAACTCTGAAAGTTCAGAAATGAAGAACTTCCGATGGGGAGCAGCAACTGAGGCTAGCTTCTTCAACACCTCACCCGCAAGCATGTAAACTTTATCTGAGAGTCTAAACGACAT</gDNA_template>
            <first_frame> I  L  E  R  K  *  A  L  L  L  S  K  S  M  S  R  G  A  F  S  I  T  Q  S  D  F  S  S  K  P  G  F  C  L  T  K  A  L  S  K  R  L  C  F  S  A  N  L  T  N  V  T  A  P  S  T  L  L  C  E  S  P  T  D  L  E  D  N  L  T  E  V  P  A  N  S  F  T  S  L  A  V  A  F  I  *  S  C  C  I  I  E  M  F  A  *  S  F  S  H  R  T  K  K  A  S  I  K  G  N  R  R  *  V  P  G  G  N  G  E  D  T  D  E  A  P  A  S  F  I  C  S  P  V  L  V  L  D  I  T  E  E  E  V  L  W  V  S  S  N  S  M  V  P  M  H  S  L  R  P  S  H  K  G  S  S  A  T  F  N  F  H  M  M  L  C  S  S  C  S  S  S  I  D  V  S  V  L  P  S  A  E  A  V  L  S  E  L  R  V  C  S  T  R  R  T  A  A  P  A  I  D  P  A  L  N  P  S  M  C  V  F  L  S  V  I  S  S  S  T  A  D  L  L  S  L  *  V  N  S  E  S  S  E  M  K  N  F  R  W  G  A  A  T  E  A  S  F  F  N  T  S  P  A  S  M  *  T  L  S  E  S  L  N  D   </first_frame>
            <second_frame>  F  S  S  E  N  K  L  F  Y  C  Q  N  Q  *  A  V  G  L  S  A  S  H  K  V  I  S  P  V  S  R  G  S  A  *  Q  K  R  *  A  S  A  Y  A  F  P  Q  I  L  Q  M  L  Q  H  H  L  L  F  Y  V  N  H  Q  Q  T  W  R  T  T  *  L  K  Y  R  L  T  L  S  L  L  L  Q  L  H  S  Y  D  L  A  A  *  *  R  C  L  P  E  A  S  H  T  E  Q  R  K  P  Q  *  K  V  T  D  A  E  F  Q  G  A  M  E  K  I  Q  M  K  H  R  L  H  L  Y  A  P  Q  C  W  Y  L  T  *  L  K  K  K  C  S  G  *  A  L  T  P  W  C  L  C  I  H  S  G  L  P  T  K  V  L  V  Q  H  L  T  S  T  *  C  Y  A  H  H  V  L  P  P  *  M  C  L  Y  C  H  Q  Q  K  L  Y  L  V  N  *  E  S  V  V  H  E  G  P  Q  L  Q  P  *  I  Q  R  S  I  P  A  C  V  Y  S  *  V  *  *  A  L  P  Q  L  T  C  S  A  F  E  S  T  L  K  V  Q  K  *  R  T  S  D  G  E  Q  Q  L  R  L  A  S  S  T  P  H  P  Q  A  C  K  L  Y  L  R  V  *  T  T  </second_frame>
            <third_frame>   S  R  A  K  I  S  S  F  I  V  K  I  N  E  P  W  G  F  Q  H  H  T  K  *  F  L  Q  *  A  G  V  L  P  D  K  S  V  K  Q  A  P  M  L  F  R  K  S  Y  K  C  Y  S  T  I  Y  S  F  M  *  I  T  N  R  L  G  G  Q  L  D  *  S  T  G  *  L  F  H  F  S  C  S  C  I  H  M  I  L  L  H  N  R  D  V  C  L  K  L  L  T  Q  N  K  E  S  L  N  K  R  *  Q  T  L  S  S  R  G  Q  W  R  R  Y  R  *  S  T  G  F  I  Y  M  L  P  S  V  G  T  *  H  N  *  R  R  S  A  L  G  E  L  *  L  H  G  A  Y  A  F  T  Q  A  F  P  Q  R  F  *  C  N  I  *  L  P  H  D  V  M  L  I  M  F  F  L  H  R  C  V  C  I  A  I  S  R  S  C  T  *  *  T  K  S  L  *  Y  T  K  D  R  S  S  S  H  R  S  S  A  Q  S  Q  H  V  C  I  L  K  C  D  K  L  F  H  S  *  L  A  Q  P  L  S  Q  L  *  K  F  R  N  E  E  L  P  M  G  S  S  N  *  G  *  L  L  Q  H  L  T  R  K  H  V  N  F  I  *  E  S  K  R  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29354" stop="28983"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VPGGNGEDTDEAPASFICSPVLVLDITEEEVLWVSSNSMVPMHSLRPSHKGSSATFNFHMMLCSSCSSSIDVSVLPSAEAVLSELRVCSTRRTAAPAIDPALNPSMCVFLSVISSSTADLLSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29675" stop="29436"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALLLSKSMSRGAFSITQSDFSSKPGFCLTKALSKRLCFSANLTNVTAPSTLLCESPTDLEDNLTEVPANSFTSLAVAFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="35220" PGL_stop="39909"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35220" e_stop="35322"/>
            <exon e_start="37483" e_stop="37665"/>
            <exon e_start="39543" e_stop="39909"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.537" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35220" e_stop="35322" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.537">
            <gDNA_intron_boundary i_start="35323" i_stop="37482" i_length="2160"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37483" e_stop="37665" e_length="183"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="37666" i_stop="39542" i_length="1877"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39543" e_stop="39909" e_length="367"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35220" stop="35322"/>
              <exon start="37483" stop="37665"/>
              <exon start="39543" stop="39889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35220" stop="35322"/>
              <exon start="37483" stop="37665"/>
              <exon start="39543" stop="39861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35220" stop="35322"/>
              <exon start="37483" stop="37665"/>
              <exon start="39543" stop="39750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35287" stop="35322"/>
              <exon start="37483" stop="37665"/>
              <exon start="39543" stop="39860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35287" stop="35322"/>
              <exon start="37483" stop="37665"/>
              <exon start="39543" stop="39855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540502" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35288" stop="35322"/>
              <exon start="37483" stop="37665"/>
              <exon start="39543" stop="39859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37483" stop="37665"/>
              <exon start="39543" stop="39860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37602" stop="37665"/>
              <exon start="39543" stop="39909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278854" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAATTACGCATTTTCATACTTTTCTCTCTCAAAAAATTCCTTTCTCTTTCGCTCTGTTCCACTGAGGAAAATTCTCATTCTCTATAGTTGGATTCATGTCG : GAAAAGGGTCGACCATTGCCTAAGTTTGGTGAATGGGATGTCAATGATCCAGCTTCTGCAGAGGGATTTACTGTGATTTTCAACAAGGCTAGGGATGAGAAAAAAACTGGTGGCAAGCCAGACTCACCATCAAAGACTGATGGTAATAGAAAGGAAGGAGAAGAACCTTTAAAACCTCAAACT : AAAAAATGGTTTTGCTGTATGCAGAGCCCTCATGCAGAATCTTGACAATGTTGTGTAAAATCTGAATATAGGATGCATATTCATAATGAAACCCCACAACTTCTTTTGGATTGGTGCTGGAGACTGAGGCATTGCTCAAAGTCCCCTTTTGTCTTGTAAACTTGTGTTATATTGTTGGGGAAACAAAATATGAAAGACAAAAATGTTTGATGTTGTACCTATATGTTGTATCTTTTTATTTTACCTTTAGCAGACAAGCACATAGTGTGGTTTGTAAAGCACCTCTCAACCGTAAATTTTTCTTGTTGATTTCATGAGATCATGTTGTTTTTGCCTAATAAGTAGAAAATGCATCGTAGAACTTCCT</gDNA_template>
            <first_frame> Q  N  Y  A  F  S  Y  F  S  L  S  K  N  S  F  L  F  R  S  V  P  L  R  K  I  L  I  L  Y  S  W  I  H  V   : G  K  G  S  T  I  A  *  V  W  *  M  G  C  Q  *  S  S  F  C  R  G  I  Y  C  D  F  Q  Q  G  *  G  *  E  K  N  W  W  Q  A  R  L  T  I  K  D  *  W  *  *  K  G  R  R  R  T  F  K  T  S  N   : *  K  M  V  L  L  Y  A  E  P  S  C  R  I  L  T  M  L  C  K  I  *  I  *  D  A  Y  S  *  *  N  P  T  T  S  F  G  L  V  L  E  T  E  A  L  L  K  V  P  F  C  L  V  N  L  C  Y  I  V  G  E  T  K  Y  E  R  Q  K  C  L  M  L  Y  L  Y  V  V  S  F  Y  F  T  F  S  R  Q  A  H  S  V  V  C  K  A  P  L  N  R  K  F  F  L  L  I  S  *  D  H  V  V  F  A  *  *  V  E  N  A  S  *  N  F   </first_frame>
            <second_frame>  K  I  T  H  F  H  T  F  L  S  Q  K  I  P  F  S  F  A  L  F  H  *  G  K  F  S  F  S  I  V  G  F  M  S  :  E  K  G  R  P  L  P  K  F  G  E  W  D  V  N  D  P  A  S  A  E  G  F  T  V  I  F  N  K  A  R  D  E  K  K  T  G  G  K  P  D  S  P  S  K  T  D  G  N  R  K  E  G  E  E  P  L  K  P  Q  T  :  K  K  W  F  C  C  M  Q  S  P  H  A  E  S  *  Q  C  C  V  K  S  E  Y  R  M  H  I  H  N  E  T  P  Q  L  L  L  D  W  C  W  R  L  R  H  C  S  K  S  P  F  V  L  *  T  C  V  I  L  L  G  K  Q  N  M  K  D  K  N  V  *  C  C  T  Y  M  L  Y  L  F  I  L  P  L  A  D  K  H  I  V  W  F  V  K  H  L  S  T  V  N  F  S  C  *  F  H  E  I  M  L  F  L  P  N  K  *  K  M  H  R  R  T  S  </second_frame>
            <third_frame>   K  L  R  I  F  I  L  F  S  L  K  K  F  L  S  L  S  L  C  S  T  E  E  N  S  H  S  L  *  L  D  S  C  R :   K  R  V  D  H  C  L  S  L  V  N  G  M  S  M  I  Q  L  L  Q  R  D  L  L  *  F  S  T  R  L  G  M  R  K  K  L  V  A  S  Q  T  H  H  Q  R  L  M  V  I  E  R  K  E  K  N  L  *  N  L  K  L :   K  N  G  F  A  V  C  R  A  L  M  Q  N  L  D  N  V  V  *  N  L  N  I  G  C  I  F  I  M  K  P  H  N  F  F  W  I  G  A  G  D  *  G  I  A  Q  S  P  L  L  S  C  K  L  V  L  Y  C  W  G  N  K  I  *  K  T  K  M  F  D  V  V  P  I  C  C  I  F  L  F  Y  L  *  Q  T  S  T  *  C  G  L  *  S  T  S  Q  P  *  I  F  L  V  D  F  M  R  S  C  C  F  C  L  I  S  R  K  C  I  V  E  L  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35287" stop="35322"/>
                    <exon start="37483" stop="37665"/>
                    <exon start="39543" stop="39587"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKFSFSIVGFMSEKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPDSPSKTDGNRKEGEEPLKPQTKKWFCCMQSPHAES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39632" stop="39859"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPTTSFGLVLETEALLKVPFCLVNLCYIVGETKYERQKCLMLYLYVVSFYFTFSRQAHSVVCKAPLNRKFFLLIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="43781" PGL_stop="39303"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43781" e_stop="43705"/>
            <exon e_start="43614" e_stop="43405"/>
            <exon e_start="41754" e_stop="41568"/>
            <exon e_start="41484" e_stop="41377"/>
            <exon e_start="40604" e_stop="40271"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.912" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43781" e_stop="43705" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="43704" i_stop="43615" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43614" e_stop="43405" e_length="210"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43404" i_stop="41755" i_length="1650"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41754" e_stop="41568" e_length="187"/>
          </exon>
          <intron i_serial="3" don_prob="0.912" acc_prob="0.994">
            <gDNA_intron_boundary i_start="41567" i_stop="41485" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41484" e_stop="41377" e_length="108"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.994">
            <gDNA_intron_boundary i_start="41376" i_stop="40605" i_length="772"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40604" e_stop="40271" e_length="334"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43781" stop="43705"/>
              <exon start="43614" stop="43405"/>
              <exon start="41754" stop="41568"/>
              <exon start="41484" stop="41377"/>
              <exon start="40604" stop="40271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43767" stop="43705"/>
              <exon start="43614" stop="43405"/>
              <exon start="41754" stop="41568"/>
              <exon start="41484" stop="41404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43767" stop="43705"/>
              <exon start="43614" stop="43405"/>
              <exon start="41754" stop="41568"/>
              <exon start="41484" stop="41462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43763" stop="43705"/>
              <exon start="43614" stop="43405"/>
              <exon start="41754" stop="41591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43762" stop="43705"/>
              <exon start="43614" stop="43405"/>
              <exon start="41754" stop="41568"/>
              <exon start="41484" stop="41377"/>
              <exon start="40604" stop="40583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43762" stop="43705"/>
              <exon start="43614" stop="43405"/>
              <exon start="41754" stop="41568"/>
              <exon start="41484" stop="41377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43756" stop="43705"/>
              <exon start="43614" stop="43405"/>
              <exon start="41754" stop="41568"/>
              <exon start="41484" stop="41377"/>
              <exon start="40604" stop="40294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41736" stop="41568"/>
              <exon start="41484" stop="41377"/>
              <exon start="40604" stop="40308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41632" stop="41568"/>
              <exon start="41484" stop="41377"/>
              <exon start="40604" stop="40286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41426" stop="41377"/>
              <exon start="40604" stop="40271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543244" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGTCAAACAAACACAACAAAAATCGTACAAATTTCAAACTCTTGTCCAAAATCCCAATTTTTTCGCCAAGAAAAG : ATGAGAATTGGGTCATTGAAAGTTTGGATCTTGGTGACTATATTGGTGGTGGCATGGAGATGTGGAGGGGTTTATGGAATTAGATTTGTGATTGATAGAGAAGAATGTTTTTCACATAAAGTTCAAATGGGAGAATCAGTCCATTTTTCGTTTGTTGTTATCAAATCAGAAGGTTCTTGGCATTATAGTGAAGAGGGTGTTGACCTTGTG : GTGAAGGGACCTTCCGGGGAGCAGCTTCATGATTTTCGTGACAAAATAAGTGAGAAGAACGAGTTTGTGGCCCATCATGAAGGAGTTTATCGTTTCTGTTTCACCAACAAGTCACCCTATCATGAAACCATAGACTTTGATCTACATGCTGCCCACTTCTCATACCACGACGAGCACGCAAAAGATG : AGCATTTCAAACCGTTGTTTGAGCACATTGGACAACTAGAGGAAGCTTTATACAACATTCAGTTTGAGCAGCATTGGCTCGAGGCCCAGACAGACCGACAAGCAATAG : TGAATGAAATAATGAGCAAAAGAGCCGTCTACAAAGCTTTGCTCGAGTCTTCTGCTCTCATTGGCGTTAGCATTCTACAAGTCTACCTTCTAAAGCATCTTTTCGAACGAAAGCTGGGGCAATCCAGAGTTTAGGTTTTGACAGAACTGAAGATATTTATACTGCTGATCATCTTTGAACTTCAAATGCATTCCCTTTATGTACTGTAAAAACTAGAATGAACAGTTTTTGCCAGAGATTAAAGTTTTTATATTTCCTTTAGTTGAATGTTGAAAGCTCAATAATCTCAAATGAAAAATTACAATTCCTTTTGGAATTTTATTTTGTTTGGTAA</gDNA_template>
            <first_frame> *  V  K  Q  T  Q  Q  K  S  Y  K  F  Q  T  L  V  Q  N  P  N  F  F  A  K  K  R :   *  E  L  G  H  *  K  F  G  S  W  *  L  Y  W  W  W  H  G  D  V  E  G  F  M  E  L  D  L  *  L  I  E  K  N  V  F  H  I  K  F  K  W  E  N  Q  S  I  F  R  L  L  L  S  N  Q  K  V  L  G  I  I  V  K  R  V  L  T  L  W :   *  R  D  L  P  G  S  S  F  M  I  F  V  T  K  *  V  R  R  T  S  L  W  P  I  M  K  E  F  I  V  S  V  S  P  T  S  H  P  I  M  K  P  *  T  L  I  Y  M  L  P  T  S  H  T  T  T  S  T  Q  K  M  :  S  I  S  N  R  C  L  S  T  L  D  N  *  R  K  L  Y  T  T  F  S  L  S  S  I  G  S  R  P  R  Q  T  D  K  Q  *  :  *  M  K  *  *  A  K  E  P  S  T  K  L  C  S  S  L  L  L  S  L  A  L  A  F  Y  K  S  T  F  *  S  I  F  S  N  E  S  W  G  N  P  E  F  R  F  *  Q  N  *  R  Y  L  Y  C  *  S  S  L  N  F  K  C  I  P  F  M  Y  C  K  N  *  N  E  Q  F  L  P  E  I  K  V  F  I  F  P  L  V  E  C  *  K  L  N  N  L  K  *  K  I  T  I  P  F  G  I  L  F  C  L  V  </first_frame>
            <second_frame>  K  S  N  K  H  N  K  N  R  T  N  F  K  L  L  S  K  I  P  I  F  S  P  R  K   : D  E  N  W  V  I  E  S  L  D  L  G  D  Y  I  G  G  G  M  E  M  W  R  G  L  W  N  *  I  C  D  *  *  R  R  M  F  F  T  *  S  S  N  G  R  I  S  P  F  F  V  C  C  Y  Q  I  R  R  F  L  A  L  *  *  R  G  C  *  P  C   : G  E  G  T  F  R  G  A  A  S  *  F  S  *  Q  N  K  *  E  E  R  V  C  G  P  S  *  R  S  L  S  F  L  F  H  Q  Q  V  T  L  S  *  N  H  R  L  *  S  T  C  C  P  L  L  I  P  R  R  A  R  K  R  * :   A  F  Q  T  V  V  *  A  H  W  T  T  R  G  S  F  I  Q  H  S  V  *  A  A  L  A  R  G  P  D  R  P  T  S  N  S :   E  *  N  N  E  Q  K  S  R  L  Q  S  F  A  R  V  F  C  S  H  W  R  *  H  S  T  S  L  P  S  K  A  S  F  R  T  K  A  G  A  I  Q  S  L  G  F  D  R  T  E  D  I  Y  T  A  D  H  L  *  T  S  N  A  F  P  L  C  T  V  K  T  R  M  N  S  F  C  Q  R  L  K  F  L  Y  F  L  *  L  N  V  E  S  S  I  I  S  N  E  K  L  Q  F  L  L  E  F  Y  F  V  W  * </second_frame>
            <third_frame>   S  Q  T  N  T  T  K  I  V  Q  I  S  N  S  C  P  K  S  Q  F  F  R  Q  E  K  :  M  R  I  G  S  L  K  V  W  I  L  V  T  I  L  V  V  A  W  R  C  G  G  V  Y  G  I  R  F  V  I  D  R  E  E  C  F  S  H  K  V  Q  M  G  E  S  V  H  F  S  F  V  V  I  K  S  E  G  S  W  H  Y  S  E  E  G  V  D  L  V  :  V  K  G  P  S  G  E  Q  L  H  D  F  R  D  K  I  S  E  K  N  E  F  V  A  H  H  E  G  V  Y  R  F  C  F  T  N  K  S  P  Y  H  E  T  I  D  F  D  L  H  A  A  H  F  S  Y  H  D  E  H  A  K  D   : E  H  F  K  P  L  F  E  H  I  G  Q  L  E  E  A  L  Y  N  I  Q  F  E  Q  H  W  L  E  A  Q  T  D  R  Q  A  I   : V  N  E  I  M  S  K  R  A  V  Y  K  A  L  L  E  S  S  A  L  I  G  V  S  I  L  Q  V  Y  L  L  K  H  L  F  E  R  K  L  G  Q  S  R  V  *  V  L  T  E  L  K  I  F  I  L  L  I  I  F  E  L  Q  M  H  S  L  Y  V  L  *  K  L  E  *  T  V  F  A  R  D  *  S  F  Y  I  S  F  S  *  M  L  K  A  Q  *  S  Q  M  K  N  Y  N  S  F  W  N  F  I  L  F  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43779" stop="43705"/>
                    <exon start="43614" stop="43405"/>
                    <exon start="41754" stop="41568"/>
                    <exon start="41484" stop="41377"/>
                    <exon start="40604" stop="40471"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQTNTTKIVQISNSCPKSQFFRQEKMRIGSLKVWILVTILVVAWRCGGVYGIRFVIDREECFSHKVQMGESVHFSFVVIKSEGSWHYSEEGVDLVVKGPSGEQLHDFRDKISEKNEFVAHHEGVYRFCFTNKSPYHETIDFDLHAAHFSYHDEHAKDEHFKPLFEHIGQLEEALYNIQFEQHWLEAQTDRQAIVNEIMSKRAVYKALLESSALIGVSILQVYLLKHLFERKLGQSRV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="43767" e_stop="43705"/>
            <exon e_start="43614" e_stop="43405"/>
            <exon e_start="41754" e_stop="41568"/>
            <exon e_start="41484" e_stop="41377"/>
            <exon e_start="40604" e_stop="40275"/>
            <exon e_start="39786" e_stop="39761"/>
            <exon e_start="39310" e_stop="39303"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.912" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.182" e_score="1.000"/>
          <exon-intron don_prob="0.877" acc_prob="0.485" e_score="0.654"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43767" e_stop="43705" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="43704" i_stop="43615" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43614" e_stop="43405" e_length="210"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43404" i_stop="41755" i_length="1650"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41754" e_stop="41568" e_length="187"/>
          </exon>
          <intron i_serial="3" don_prob="0.912" acc_prob="0.994">
            <gDNA_intron_boundary i_start="41567" i_stop="41485" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41484" e_stop="41377" e_length="108"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.994">
            <gDNA_intron_boundary i_start="41376" i_stop="40605" i_length="772"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40604" e_stop="40275" e_length="330"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.182">
            <gDNA_intron_boundary i_start="40274" i_stop="39787" i_length="488"/>
          </intron>
          <exon e_serial="6" e_score="0.654">
            <gDNA_exon_boundary e_start="39786" e_stop="39761" e_length="26"/>
          </exon>
          <intron i_serial="6" don_prob="0.877" acc_prob="0.485">
            <gDNA_intron_boundary i_start="39760" i_stop="39311" i_length="450"/>
          </intron>
          <exon e_serial="7" e_score="0.500">
            <gDNA_exon_boundary e_start="39310" e_stop="39303" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43767" stop="43705"/>
              <exon start="43614" stop="43405"/>
              <exon start="41754" stop="41568"/>
              <exon start="41484" stop="41404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43767" stop="43705"/>
              <exon start="43614" stop="43405"/>
              <exon start="41754" stop="41568"/>
              <exon start="41484" stop="41462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43763" stop="43705"/>
              <exon start="43614" stop="43405"/>
              <exon start="41754" stop="41591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43762" stop="43705"/>
              <exon start="43614" stop="43405"/>
              <exon start="41754" stop="41568"/>
              <exon start="41484" stop="41377"/>
              <exon start="40604" stop="40583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43762" stop="43705"/>
              <exon start="43614" stop="43405"/>
              <exon start="41754" stop="41568"/>
              <exon start="41484" stop="41377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43756" stop="43705"/>
              <exon start="43614" stop="43405"/>
              <exon start="41754" stop="41568"/>
              <exon start="41484" stop="41377"/>
              <exon start="40604" stop="40294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41736" stop="41568"/>
              <exon start="41484" stop="41377"/>
              <exon start="40604" stop="40308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41632" stop="41568"/>
              <exon start="41484" stop="41377"/>
              <exon start="40604" stop="40286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40584" stop="40275"/>
              <exon start="39786" stop="39761"/>
              <exon start="39310" stop="39303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290698" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAACAAAAATCGTACAAATTTCAAACTCTTGTCCAAAATCCCAATTTTTTCGCCAAGAAAAG : ATGAGAATTGGGTCATTGAAAGTTTGGATCTTGGTGACTATATTGGTGGTGGCATGGAGATGTGGAGGGGTTTATGGAATTAGATTTGTGATTGATAGAGAAGAATGTTTTTCACATAAAGTTCAAATGGGAGAATCAGTCCATTTTTCGTTTGTTGTTATCAAATCAGAAGGTTCTTGGCATTATAGTGAAGAGGGTGTTGACCTTGTG : GTGAAGGGACCTTCCGGGGAGCAGCTTCATGATTTTCGTGACAAAATAAGTGAGAAGAACGAGTTTGTGGCCCATCATGAAGGAGTTTATCGTTTCTGTTTCACCAACAAGTCACCCTATCATGAAACCATAGACTTTGATCTACATGCTGCCCACTTCTCATACCACGACGAGCACGCAAAAGATG : AGCATTTCAAACCGTTGTTTGAGCACATTGGACAACTAGAGGAAGCTTTATACAACATTCAGTTTGAGCAGCATTGGCTCGAGGCCCAGACAGACCGACAAGCAATAG : TGAATGAAATAATGAGCAAAAGAGCCGTCTACAAAGCTTTGCTCGAGTCTTCTGCTCTCATTGGCGTTAGCATTCTACAAGTCTACCTTCTAAAGCATCTTTTCGAACGAAAGCTGGGGCAATCCAGAGTTTAGGTTTTGACAGAACTGAAGATATTTATACTGCTGATCATCTTTGAACTTCAAATGCATTCCCTTTATGTACTGTAAAAACTAGAATGAACAGTTTTTGCCAGAGATTAAAGTTTTTATATTTCCTTTAGTTGAATGTTGAAAGCTCAATAATCTCAAATGAAAAATTACAATTCCTTTTGGAATTTTATTTTGTTTG : GTAAAATAAAAAGATACAACATATAG : GATAAATC</gDNA_template>
            <first_frame> T  T  K  I  V  Q  I  S  N  S  C  P  K  S  Q  F  F  R  Q  E  K  :  M  R  I  G  S  L  K  V  W  I  L  V  T  I  L  V  V  A  W  R  C  G  G  V  Y  G  I  R  F  V  I  D  R  E  E  C  F  S  H  K  V  Q  M  G  E  S  V  H  F  S  F  V  V  I  K  S  E  G  S  W  H  Y  S  E  E  G  V  D  L  V  :  V  K  G  P  S  G  E  Q  L  H  D  F  R  D  K  I  S  E  K  N  E  F  V  A  H  H  E  G  V  Y  R  F  C  F  T  N  K  S  P  Y  H  E  T  I  D  F  D  L  H  A  A  H  F  S  Y  H  D  E  H  A  K  D   : E  H  F  K  P  L  F  E  H  I  G  Q  L  E  E  A  L  Y  N  I  Q  F  E  Q  H  W  L  E  A  Q  T  D  R  Q  A  I   : V  N  E  I  M  S  K  R  A  V  Y  K  A  L  L  E  S  S  A  L  I  G  V  S  I  L  Q  V  Y  L  L  K  H  L  F  E  R  K  L  G  Q  S  R  V  *  V  L  T  E  L  K  I  F  I  L  L  I  I  F  E  L  Q  M  H  S  L  Y  V  L  *  K  L  E  *  T  V  F  A  R  D  *  S  F  Y  I  S  F  S  *  M  L  K  A  Q  *  S  Q  M  K  N  Y  N  S  F  W  N  F  I  L  F   : G  K  I  K  R  Y  N  I  *  :  D  K   </first_frame>
            <second_frame>  Q  Q  K  S  Y  K  F  Q  T  L  V  Q  N  P  N  F  F  A  K  K  R :   *  E  L  G  H  *  K  F  G  S  W  *  L  Y  W  W  W  H  G  D  V  E  G  F  M  E  L  D  L  *  L  I  E  K  N  V  F  H  I  K  F  K  W  E  N  Q  S  I  F  R  L  L  L  S  N  Q  K  V  L  G  I  I  V  K  R  V  L  T  L  W :   *  R  D  L  P  G  S  S  F  M  I  F  V  T  K  *  V  R  R  T  S  L  W  P  I  M  K  E  F  I  V  S  V  S  P  T  S  H  P  I  M  K  P  *  T  L  I  Y  M  L  P  T  S  H  T  T  T  S  T  Q  K  M  :  S  I  S  N  R  C  L  S  T  L  D  N  *  R  K  L  Y  T  T  F  S  L  S  S  I  G  S  R  P  R  Q  T  D  K  Q  *  :  *  M  K  *  *  A  K  E  P  S  T  K  L  C  S  S  L  L  L  S  L  A  L  A  F  Y  K  S  T  F  *  S  I  F  S  N  E  S  W  G  N  P  E  F  R  F  *  Q  N  *  R  Y  L  Y  C  *  S  S  L  N  F  K  C  I  P  F  M  Y  C  K  N  *  N  E  Q  F  L  P  E  I  K  V  F  I  F  P  L  V  E  C  *  K  L  N  N  L  K  *  K  I  T  I  P  F  G  I  L  F  C  L  :  V  K  *  K  D  T  T  Y  R :   I  N  </second_frame>
            <third_frame>   N  K  N  R  T  N  F  K  L  L  S  K  I  P  I  F  S  P  R  K   : D  E  N  W  V  I  E  S  L  D  L  G  D  Y  I  G  G  G  M  E  M  W  R  G  L  W  N  *  I  C  D  *  *  R  R  M  F  F  T  *  S  S  N  G  R  I  S  P  F  F  V  C  C  Y  Q  I  R  R  F  L  A  L  *  *  R  G  C  *  P  C   : G  E  G  T  F  R  G  A  A  S  *  F  S  *  Q  N  K  *  E  E  R  V  C  G  P  S  *  R  S  L  S  F  L  F  H  Q  Q  V  T  L  S  *  N  H  R  L  *  S  T  C  C  P  L  L  I  P  R  R  A  R  K  R  * :   A  F  Q  T  V  V  *  A  H  W  T  T  R  G  S  F  I  Q  H  S  V  *  A  A  L  A  R  G  P  D  R  P  T  S  N  S :   E  *  N  N  E  Q  K  S  R  L  Q  S  F  A  R  V  F  C  S  H  W  R  *  H  S  T  S  L  P  S  K  A  S  F  R  T  K  A  G  A  I  Q  S  L  G  F  D  R  T  E  D  I  Y  T  A  D  H  L  *  T  S  N  A  F  P  L  C  T  V  K  T  R  M  N  S  F  C  Q  R  L  K  F  L  Y  F  L  *  L  N  V  E  S  S  I  I  S  N  E  K  L  Q  F  L  L  E  F  Y  F  V  W :   *  N  K  K  I  Q  H  I   : G  *  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43767" stop="43705"/>
                    <exon start="43614" stop="43405"/>
                    <exon start="41754" stop="41568"/>
                    <exon start="41484" stop="41377"/>
                    <exon start="40604" stop="40471"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTKIVQISNSCPKSQFFRQEKMRIGSLKVWILVTILVVAWRCGGVYGIRFVIDREECFSHKVQMGESVHFSFVVIKSEGSWHYSEEGVDLVVKGPSGEQLHDFRDKISEKNEFVAHHEGVYRFCFTNKSPYHETIDFDLHAAHFSYHDEHAKDEHFKPLFEHIGQLEEALYNIQFEQHWLEAQTDRQAIVNEIMSKRAVYKALLESSALIGVSILQVYLLKHLFERKLGQSRV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="43767" e_stop="43705"/>
            <exon e_start="43614" e_stop="43405"/>
            <exon e_start="41754" e_stop="41568"/>
            <exon e_start="41484" e_stop="41377"/>
            <exon e_start="40604" e_stop="40275"/>
            <exon e_start="39786" e_stop="39761"/>
            <exon e_start="39582" e_stop="39569"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.912" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.182" e_score="1.000"/>
          <exon-intron don_prob="0.877" acc_prob="0.040" e_score="0.692"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43767" e_stop="43705" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="43704" i_stop="43615" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43614" e_stop="43405" e_length="210"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43404" i_stop="41755" i_length="1650"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41754" e_stop="41568" e_length="187"/>
          </exon>
          <intron i_serial="3" don_prob="0.912" acc_prob="0.994">
            <gDNA_intron_boundary i_start="41567" i_stop="41485" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41484" e_stop="41377" e_length="108"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.994">
            <gDNA_intron_boundary i_start="41376" i_stop="40605" i_length="772"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40604" e_stop="40275" e_length="330"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.182">
            <gDNA_intron_boundary i_start="40274" i_stop="39787" i_length="488"/>
          </intron>
          <exon e_serial="6" e_score="0.692">
            <gDNA_exon_boundary e_start="39786" e_stop="39761" e_length="26"/>
          </exon>
          <intron i_serial="6" don_prob="0.877" acc_prob="0.040">
            <gDNA_intron_boundary i_start="39760" i_stop="39583" i_length="178"/>
          </intron>
          <exon e_serial="7" e_score="0.571">
            <gDNA_exon_boundary e_start="39582" e_stop="39569" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43767" stop="43705"/>
              <exon start="43614" stop="43405"/>
              <exon start="41754" stop="41568"/>
              <exon start="41484" stop="41404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43767" stop="43705"/>
              <exon start="43614" stop="43405"/>
              <exon start="41754" stop="41568"/>
              <exon start="41484" stop="41462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43763" stop="43705"/>
              <exon start="43614" stop="43405"/>
              <exon start="41754" stop="41591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43762" stop="43705"/>
              <exon start="43614" stop="43405"/>
              <exon start="41754" stop="41568"/>
              <exon start="41484" stop="41377"/>
              <exon start="40604" stop="40583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43762" stop="43705"/>
              <exon start="43614" stop="43405"/>
              <exon start="41754" stop="41568"/>
              <exon start="41484" stop="41377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43756" stop="43705"/>
              <exon start="43614" stop="43405"/>
              <exon start="41754" stop="41568"/>
              <exon start="41484" stop="41377"/>
              <exon start="40604" stop="40294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43508" stop="43405"/>
              <exon start="41754" stop="41568"/>
              <exon start="41484" stop="41377"/>
              <exon start="40604" stop="40275"/>
              <exon start="39786" stop="39761"/>
              <exon start="39582" stop="39569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41736" stop="41568"/>
              <exon start="41484" stop="41377"/>
              <exon start="40604" stop="40308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41632" stop="41568"/>
              <exon start="41484" stop="41377"/>
              <exon start="40604" stop="40286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706814" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAACAAAAATCGTACAAATTTCAAACTCTTGTCCAAAATCCCAATTTTTTCGCCAAGAAAAG : ATGAGAATTGGGTCATTGAAAGTTTGGATCTTGGTGACTATATTGGTGGTGGCATGGAGATGTGGAGGGGTTTATGGAATTAGATTTGTGATTGATAGAGAAGAATGTTTTTCACATAAAGTTCAAATGGGAGAATCAGTCCATTTTTCGTTTGTTGTTATCAAATCAGAAGGTTCTTGGCATTATAGTGAAGAGGGTGTTGACCTTGTG : GTGAAGGGACCTTCCGGGGAGCAGCTTCATGATTTTCGTGACAAAATAAGTGAGAAGAACGAGTTTGTGGCCCATCATGAAGGAGTTTATCGTTTCTGTTTCACCAACAAGTCACCCTATCATGAAACCATAGACTTTGATCTACATGCTGCCCACTTCTCATACCACGACGAGCACGCAAAAGATG : AGCATTTCAAACCGTTGTTTGAGCACATTGGACAACTAGAGGAAGCTTTATACAACATTCAGTTTGAGCAGCATTGGCTCGAGGCCCAGACAGACCGACAAGCAATAG : TGAATGAAATAATGAGCAAAAGAGCCGTCTACAAAGCTTTGCTCGAGTCTTCTGCTCTCATTGGCGTTAGCATTCTACAAGTCTACCTTCTAAAGCATCTTTTCGAACGAAAGCTGGGGCAATCCAGAGTTTAGGTTTTGACAGAACTGAAGATATTTATACTGCTGATCATCTTTGAACTTCAAATGCATTCCCTTTATGTACTGTAAAAACTAGAATGAACAGTTTTTGCCAGAGATTAAAGTTTTTATATTTCCTTTAGTTGAATGTTGAAAGCTCAATAATCTCAAATGAAAAATTACAATTCCTTTTGGAATTTTATTTTGTTTG : GTAAAATAAAAAGATACAACATATAG : ATTCTGCATGAGGG</gDNA_template>
            <first_frame> T  T  K  I  V  Q  I  S  N  S  C  P  K  S  Q  F  F  R  Q  E  K  :  M  R  I  G  S  L  K  V  W  I  L  V  T  I  L  V  V  A  W  R  C  G  G  V  Y  G  I  R  F  V  I  D  R  E  E  C  F  S  H  K  V  Q  M  G  E  S  V  H  F  S  F  V  V  I  K  S  E  G  S  W  H  Y  S  E  E  G  V  D  L  V  :  V  K  G  P  S  G  E  Q  L  H  D  F  R  D  K  I  S  E  K  N  E  F  V  A  H  H  E  G  V  Y  R  F  C  F  T  N  K  S  P  Y  H  E  T  I  D  F  D  L  H  A  A  H  F  S  Y  H  D  E  H  A  K  D   : E  H  F  K  P  L  F  E  H  I  G  Q  L  E  E  A  L  Y  N  I  Q  F  E  Q  H  W  L  E  A  Q  T  D  R  Q  A  I   : V  N  E  I  M  S  K  R  A  V  Y  K  A  L  L  E  S  S  A  L  I  G  V  S  I  L  Q  V  Y  L  L  K  H  L  F  E  R  K  L  G  Q  S  R  V  *  V  L  T  E  L  K  I  F  I  L  L  I  I  F  E  L  Q  M  H  S  L  Y  V  L  *  K  L  E  *  T  V  F  A  R  D  *  S  F  Y  I  S  F  S  *  M  L  K  A  Q  *  S  Q  M  K  N  Y  N  S  F  W  N  F  I  L  F   : G  K  I  K  R  Y  N  I  *  :  I  L  H  E   </first_frame>
            <second_frame>  Q  Q  K  S  Y  K  F  Q  T  L  V  Q  N  P  N  F  F  A  K  K  R :   *  E  L  G  H  *  K  F  G  S  W  *  L  Y  W  W  W  H  G  D  V  E  G  F  M  E  L  D  L  *  L  I  E  K  N  V  F  H  I  K  F  K  W  E  N  Q  S  I  F  R  L  L  L  S  N  Q  K  V  L  G  I  I  V  K  R  V  L  T  L  W :   *  R  D  L  P  G  S  S  F  M  I  F  V  T  K  *  V  R  R  T  S  L  W  P  I  M  K  E  F  I  V  S  V  S  P  T  S  H  P  I  M  K  P  *  T  L  I  Y  M  L  P  T  S  H  T  T  T  S  T  Q  K  M  :  S  I  S  N  R  C  L  S  T  L  D  N  *  R  K  L  Y  T  T  F  S  L  S  S  I  G  S  R  P  R  Q  T  D  K  Q  *  :  *  M  K  *  *  A  K  E  P  S  T  K  L  C  S  S  L  L  L  S  L  A  L  A  F  Y  K  S  T  F  *  S  I  F  S  N  E  S  W  G  N  P  E  F  R  F  *  Q  N  *  R  Y  L  Y  C  *  S  S  L  N  F  K  C  I  P  F  M  Y  C  K  N  *  N  E  Q  F  L  P  E  I  K  V  F  I  F  P  L  V  E  C  *  K  L  N  N  L  K  *  K  I  T  I  P  F  G  I  L  F  C  L  :  V  K  *  K  D  T  T  Y  R :   F  C  M  R  </second_frame>
            <third_frame>   N  K  N  R  T  N  F  K  L  L  S  K  I  P  I  F  S  P  R  K   : D  E  N  W  V  I  E  S  L  D  L  G  D  Y  I  G  G  G  M  E  M  W  R  G  L  W  N  *  I  C  D  *  *  R  R  M  F  F  T  *  S  S  N  G  R  I  S  P  F  F  V  C  C  Y  Q  I  R  R  F  L  A  L  *  *  R  G  C  *  P  C   : G  E  G  T  F  R  G  A  A  S  *  F  S  *  Q  N  K  *  E  E  R  V  C  G  P  S  *  R  S  L  S  F  L  F  H  Q  Q  V  T  L  S  *  N  H  R  L  *  S  T  C  C  P  L  L  I  P  R  R  A  R  K  R  * :   A  F  Q  T  V  V  *  A  H  W  T  T  R  G  S  F  I  Q  H  S  V  *  A  A  L  A  R  G  P  D  R  P  T  S  N  S :   E  *  N  N  E  Q  K  S  R  L  Q  S  F  A  R  V  F  C  S  H  W  R  *  H  S  T  S  L  P  S  K  A  S  F  R  T  K  A  G  A  I  Q  S  L  G  F  D  R  T  E  D  I  Y  T  A  D  H  L  *  T  S  N  A  F  P  L  C  T  V  K  T  R  M  N  S  F  C  Q  R  L  K  F  L  Y  F  L  *  L  N  V  E  S  S  I  I  S  N  E  K  L  Q  F  L  L  E  F  Y  F  V  W :   *  N  K  K  I  Q  H  I   : D  S  A  *  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43767" stop="43705"/>
                    <exon start="43614" stop="43405"/>
                    <exon start="41754" stop="41568"/>
                    <exon start="41484" stop="41377"/>
                    <exon start="40604" stop="40471"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTKIVQISNSCPKSQFFRQEKMRIGSLKVWILVTILVVAWRCGGVYGIRFVIDREECFSHKVQMGESVHFSFVVIKSEGSWHYSEEGVDLVVKGPSGEQLHDFRDKISEKNEFVAHHEGVYRFCFTNKSPYHETIDFDLHAAHFSYHDEHAKDEHFKPLFEHIGQLEEALYNIQFEQHWLEAQTDRQAIVNEIMSKRAVYKALLESSALIGVSILQVYLLKHLFERKLGQSRV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="52403" PGL_stop="54784"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52403" e_stop="52871"/>
            <exon e_start="54610" e_stop="54784"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.905" e_score="0.989"/>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="52403" e_stop="52871" e_length="469"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.905">
            <gDNA_intron_boundary i_start="52872" i_stop="54609" i_length="1738"/>
          </intron>
          <exon e_serial="2" e_score="0.931">
            <gDNA_exon_boundary e_start="54610" e_stop="54784" e_length="175"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52403" stop="52871"/>
              <exon start="54610" stop="54784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340910" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCAACATACACAGCTTTTCTTTTTTTCTTTAGCTTTTTGTAAAACTTTCAAATCATCTCTTAATTCAAGATTCCTTGTCTTTACTGTTTGAATTTTTTTTCTTTGTTTTTGCTTATTGAAACTACCCATATCTCAATTTTTCCTCTTTTCATAGTTTCACTAACTAAATAGTGTTTTCCCCTTCAAAGGAATTGTCTTTTCTCTTCTTTTATACTTTGCTATTGAGGGTTTAGATAAAAAAAAAAAAGATTGTCTTTTGAGTGTTTGGGGCAGTTTGTTTTTGCTGTTTGGTTTGTGGGTTTGTGTTGATTAGTTGAAAGATTGACTTTTTTTTGAAGATTTTTGGTCAACCACTTTTGCTTATCTCTGAGAATTTGCTGCTTTGTATCAACCCTTTTGGCCTTTGGGAGTTAAAAGATTTGATGGTTTCTAGGGTTTATGGATGATTAGGGCTTTTCATCATTTAG : GTGATTCTGTGTAAAAGATTAAGATATGGTTTCAAAAGACCGTAATAAACCTACTGGATCTCCAAAAGTACATGTTGGGGAGATAGATACAAGTGCACCATTTCAGTCTGTCAAAGATGCTGTTAACTTGTTTGGGGAAGGTGCATTCTCAGGGGAAAAACCTGCAATCAGGAAG</gDNA_template>
            <first_frame> F  Q  H  T  Q  L  F  F  F  S  L  A  F  C  K  T  F  K  S  S  L  N  S  R  F  L  V  F  T  V  *  I  F  F  L  C  F  C  L  L  K  L  P  I  S  Q  F  F  L  F  S  *  F  H  *  L  N  S  V  F  P  F  K  G  I  V  F  S  L  L  L  Y  F  A  I  E  G  L  D  K  K  K  K  D  C  L  L  S  V  W  G  S  L  F  L  L  F  G  L  W  V  C  V  D  *  L  K  D  *  L  F  F  E  D  F  W  S  T  T  F  A  Y  L  *  E  F  A  A  L  Y  Q  P  F  W  P  L  G  V  K  R  F  D  G  F  *  G  L  W  M  I  R  A  F  H  H  L   : G  D  S  V  *  K  I  K  I  W  F  Q  K  T  V  I  N  L  L  D  L  Q  K  Y  M  L  G  R  *  I  Q  V  H  H  F  S  L  S  K  M  L  L  T  C  L  G  K  V  H  S  Q  G  K  N  L  Q  S  G   </first_frame>
            <second_frame>  F  N  I  H  S  F  S  F  F  L  *  L  F  V  K  L  S  N  H  L  L  I  Q  D  S  L  S  L  L  F  E  F  F  F  F  V  F  A  Y  *  N  Y  P  Y  L  N  F  S  S  F  H  S  F  T  N  *  I  V  F  S  P  S  K  E  L  S  F  L  F  F  Y  T  L  L  L  R  V  *  I  K  K  K  K  I  V  F  *  V  F  G  A  V  C  F  C  C  L  V  C  G  F  V  L  I  S  *  K  I  D  F  F  L  K  I  F  G  Q  P  L  L  L  I  S  E  N  L  L  L  C  I  N  P  F  G  L  W  E  L  K  D  L  M  V  S  R  V  Y  G  *  L  G  L  F  I  I  *  :  V  I  L  C  K  R  L  R  Y  G  F  K  R  P  *  *  T  Y  W  I  S  K  S  T  C  W  G  D  R  Y  K  C  T  I  S  V  C  Q  R  C  C  *  L  V  W  G  R  C  I  L  R  G  K  T  C  N  Q  E  </second_frame>
            <third_frame>   S  T  Y  T  A  F  L  F  F  F  S  F  L  *  N  F  Q  I  I  S  *  F  K  I  P  C  L  Y  C  L  N  F  F  S  L  F  L  L  I  E  T  T  H  I  S  I  F  P  L  F  I  V  S  L  T  K  *  C  F  P  L  Q  R  N  C  L  F  S  S  F  I  L  C  Y  *  G  F  R  *  K  K  K  R  L  S  F  E  C  L  G  Q  F  V  F  A  V  W  F  V  G  L  C  *  L  V  E  R  L  T  F  F  *  R  F  L  V  N  H  F  C  L  S  L  R  I  C  C  F  V  S  T  L  L  A  F  G  S  *  K  I  *  W  F  L  G  F  M  D  D  *  G  F  S  S  F  R :   *  F  C  V  K  D  *  D  M  V  S  K  D  R  N  K  P  T  G  S  P  K  V  H  V  G  E  I  D  T  S  A  P  F  Q  S  V  K  D  A  V  N  L  F  G  E  G  A  F  S  G  E  K  P  A  I  R  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0309B15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="56274" PGL_stop="57441"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56274" e_stop="57441"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="56274" e_stop="57441" e_length="1168"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56274" stop="56775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56658" stop="57441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56796" stop="57350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56865" stop="57346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228111" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGACGGAATCACTTGCAGGGGGTCTGCATGTCAAGCTCCGTAAAGCCAAATCCGAGCTTGAAGTAGCAGTTGCAGAAGAAGCCAAAGCAAGAGGTGCTTCTGAAGAAATGATCTCTACTCTCCACCAGCTGATCTTGGAGACTGAAAACGCAAAGCTTGAAGCTGAAGAGATGAAAATGCAAGCAGAAGAGTTAAAGAAAGAAGCTGAAGCCGCTAGAATGGCGCTTGAAGATGCAGAAAAGAAGCTTAAAGTGGCGATGGAAGAAGCTGAAGAAGCAAAATCAGCTGAGGCTGAGGCTCGTGATCAAATTAAGATTTTATCTGAAAAAACCACAGCTGCACGATCCTCAACTTCTGAGTCTGGTGCTCGTATTACTTTATCAAGAGACGAGTTTGACTCATTGAGCCGTAAAGTTGAAGAACTTGATAATTTAGCAGAAATAAGAGTGGGAGCTGCAATGGCTCAGGTAGAGGCCGTGAAAGCAAGTGAGAATGAGGCCCTCAAGAAGTTGGAGTCAACTCAAAAGGAGATTAATGATATAAAAACCGCTACTCAGGAAGCCTTGAAGAAGGCAGAGATGGCAGAAGCTGCCAAGAAGGCCGTAGAAGGGGAGCTTAGAAGGTGGCGAGAACGTGAGCAAAAGAAGGCAGCTGAGGCAGCTTCTCGTATTCTTGCTGAAACACATATGAACTACAGATCTTCTCCTCAAAGTTACACAGTTCAGAAGGAGAAACCATCTGAGAAATTCATGGAATCACATGTAAAGATGCACTCACCCGTTGAAACCAAGAAGCAAAACACACAAGAGAACATAATGGAAATGCGCAAGTTGCAGAAAGCAAAGACATCAGTGTCAAAGAAGAAAGTACTGATGCCTAGTATCAGTGGCATTTTCCACAAGAAGAAAAACCAAGTAGAGGGAGATTCTCCATCATATCTGCCTGGAGAGAAACCTGTTTGGTAACATTTTGTGCAAAATATTTGTGGTGGAGAGGAACTGGTCTCTATGCCATGGATTGTGTGTATATCTGAAACCTGTGGAGCAGCGATTTTCTTTCCCCTTTCACTTTTGGTATTTATTGTGTGTCTGCAACTTCTTAGAGTTATATACATTTGTCTCCTATAATAATAACATGCTTACGGGACTCGTCTATTCCATTTGGAG</gDNA_template>
            <first_frame> R  D  G  I  T  C  R  G  S  A  C  Q  A  P  *  S  Q  I  R  A  *  S  S  S  C  R  R  S  Q  S  K  R  C  F  *  R  N  D  L  Y  S  P  P  A  D  L  G  D  *  K  R  K  A  *  S  *  R  D  E  N  A  S  R  R  V  K  E  R  S  *  S  R  *  N  G  A  *  R  C  R  K  E  A  *  S  G  D  G  R  S  *  R  S  K  I  S  *  G  *  G  S  *  S  N  *  D  F  I  *  K  N  H  S  C  T  I  L  N  F  *  V  W  C  S  Y  Y  F  I  K  R  R  V  *  L  I  E  P  *  S  *  R  T  *  *  F  S  R  N  K  S  G  S  C  N  G  S  G  R  G  R  E  S  K  *  E  *  G  P  Q  E  V  G  V  N  S  K  G  D  *  *  Y  K  N  R  Y  S  G  S  L  E  E  G  R  D  G  R  S  C  Q  E  G  R  R  R  G  A  *  K  V  A  R  T  *  A  K  E  G  S  *  G  S  F  S  Y  S  C  *  N  T  Y  E  L  Q  I  F  S  S  K  L  H  S  S  E  G  E  T  I  *  E  I  H  G  I  T  C  K  D  A  L  T  R  *  N  Q  E  A  K  H  T  R  E  H  N  G  N  A  Q  V  A  E  S  K  D  I  S  V  K  E  E  S  T  D  A  *  Y  Q  W  H  F  P  Q  E  E  K  P  S  R  G  R  F  S  I  I  S  A  W  R  E  T  C  L  V  T  F  C  A  K  Y  L  W  W  R  G  T  G  L  Y  A  M  D  C  V  Y  I  *  N  L  W  S  S  D  F  L  S  P  F  T  F  G  I  Y  C  V  S  A  T  S  *  S  Y  I  H  L  S  P  I  I  I  T  C  L  R  D  S  S  I  P  F  G  </first_frame>
            <second_frame>  E  T  E  S  L  A  G  G  L  H  V  K  L  R  K  A  K  S  E  L  E  V  A  V  A  E  E  A  K  A  R  G  A  S  E  E  M  I  S  T  L  H  Q  L  I  L  E  T  E  N  A  K  L  E  A  E  E  M  K  M  Q  A  E  E  L  K  K  E  A  E  A  A  R  M  A  L  E  D  A  E  K  K  L  K  V  A  M  E  E  A  E  E  A  K  S  A  E  A  E  A  R  D  Q  I  K  I  L  S  E  K  T  T  A  A  R  S  S  T  S  E  S  G  A  R  I  T  L  S  R  D  E  F  D  S  L  S  R  K  V  E  E  L  D  N  L  A  E  I  R  V  G  A  A  M  A  Q  V  E  A  V  K  A  S  E  N  E  A  L  K  K  L  E  S  T  Q  K  E  I  N  D  I  K  T  A  T  Q  E  A  L  K  K  A  E  M  A  E  A  A  K  K  A  V  E  G  E  L  R  R  W  R  E  R  E  Q  K  K  A  A  E  A  A  S  R  I  L  A  E  T  H  M  N  Y  R  S  S  P  Q  S  Y  T  V  Q  K  E  K  P  S  E  K  F  M  E  S  H  V  K  M  H  S  P  V  E  T  K  K  Q  N  T  Q  E  N  I  M  E  M  R  K  L  Q  K  A  K  T  S  V  S  K  K  K  V  L  M  P  S  I  S  G  I  F  H  K  K  K  N  Q  V  E  G  D  S  P  S  Y  L  P  G  E  K  P  V  W  *  H  F  V  Q  N  I  C  G  G  E  E  L  V  S  M  P  W  I  V  C  I  S  E  T  C  G  A  A  I  F  F  P  L  S  L  L  V  F  I  V  C  L  Q  L  L  R  V  I  Y  I  C  L  L  *  *  *  H  A  Y  G  T  R  L  F  H  L  E </second_frame>
            <third_frame>   R  R  N  H  L  Q  G  V  C  M  S  S  S  V  K  P  N  P  S  L  K  *  Q  L  Q  K  K  P  K  Q  E  V  L  L  K  K  *  S  L  L  S  T  S  *  S  W  R  L  K  T  Q  S  L  K  L  K  R  *  K  C  K  Q  K  S  *  R  K  K  L  K  P  L  E  W  R  L  K  M  Q  K  R  S  L  K  W  R  W  K  K  L  K  K  Q  N  Q  L  R  L  R  L  V  I  K  L  R  F  Y  L  K  K  P  Q  L  H  D  P  Q  L  L  S  L  V  L  V  L  L  Y  Q  E  T  S  L  T  H  *  A  V  K  L  K  N  L  I  I  *  Q  K  *  E  W  E  L  Q  W  L  R  *  R  P  *  K  Q  V  R  M  R  P  S  R  S  W  S  Q  L  K  R  R  L  M  I  *  K  P  L  L  R  K  P  *  R  R  Q  R  W  Q  K  L  P  R  R  P  *  K  G  S  L  E  G  G  E  N  V  S  K  R  R  Q  L  R  Q  L  L  V  F  L  L  K  H  I  *  T  T  D  L  L  L  K  V  T  Q  F  R  R  R  N  H  L  R  N  S  W  N  H  M  *  R  C  T  H  P  L  K  P  R  S  K  T  H  K  R  T  *  W  K  C  A  S  C  R  K  Q  R  H  Q  C  Q  R  R  K  Y  *  C  L  V  S  V  A  F  S  T  R  R  K  T  K  *  R  E  I  L  H  H  I  C  L  E  R  N  L  F  G  N  I  L  C  K  I  F  V  V  E  R  N  W  S  L  C  H  G  L  C  V  Y  L  K  P  V  E  Q  R  F  S  F  P  F  H  F  W  Y  L  L  C  V  C  N  F  L  E  L  Y  T  F  V  S  Y  N  N  N  M  L  T  G  L  V  Y  S  I  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56275" stop="57240"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>963</number_coding_nucleotides>
                  <number_encoded_amino_acids>321</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETESLAGGLHVKLRKAKSELEVAVAEEAKARGASEEMISTLHQLILETENAKLEAEEMKMQAEELKKEAEAARMALEDAEKKLKVAMEEAEEAKSAEAEARDQIKILSEKTTAARSSTSESGARITLSRDEFDSLSRKVEELDNLAEIRVGAAMAQVEAVKASENEALKKLESTQKEINDIKTATQEALKKAEMAEAAKKAVEGELRRWREREQKKAAEAASRILAETHMNYRSSPQSYTVQKEKPSEKFMESHVKMHSPVETKKQNTQENIMEMRKLQKAKTSVSKKKVLMPSISGIFHKKKNQVEGDSPSYLPGEKPVW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="63163" PGL_stop="65088"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63163" e_stop="63566"/>
            <exon e_start="64795" e_stop="64880"/>
            <exon e_start="64967" e_stop="65088"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63163" e_stop="63566" e_length="404"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="63567" i_stop="64794" i_length="1228"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64795" e_stop="64880" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.946" acc_prob="0.996">
            <gDNA_intron_boundary i_start="64881" i_stop="64966" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="0.975">
            <gDNA_exon_boundary e_start="64967" e_stop="65088" e_length="122"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63163" stop="63566"/>
              <exon start="64795" stop="64880"/>
              <exon start="64967" stop="65088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63163" stop="63566"/>
              <exon start="64795" stop="64880"/>
              <exon start="64967" stop="64994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63176" stop="63566"/>
              <exon start="64795" stop="64877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63203" stop="63566"/>
              <exon start="64795" stop="64880"/>
              <exon start="64967" stop="64983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236043" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAACTTATGAGTCAAAAAGCTTCAAACTCACCGTTAATGGCGAACAGAGACGATTTCATAAACCCTAACACTTCTTCTCCTGTTACTGTTTCCGATGCCGACAGCTTCCTTCTAGATTCTTCTCAGATCGGTAGCGCTTCTGGAAGCTTCCAGAACGAGGGTTTTCTCTCCGGTGCTGATGGCGGCGCCGCCGCCGCTGCTGATGCTGAGTTTGGTTTCTCCCGTCCTGATTTTCGCCAGACGCAGCTTGTTGGTACTGTTGATTTCTATGAACGCCACGTGTTCCTTTGCTATAAGAATCCTCAAGTTTGGCCTCCTCGTATTGAGGCTGCTGAGTTTGATCGATTGCCTAGGCTTCTTGCTGCTGCTCTTACCGCTCGGAAGAATGATGTTAAGAAACAG : ACTCGGTTGACAATATGTGAAGGGCATGATGGAACTGAGACATCGAATGGGGATGTGTTGATCTTTCCGGACATGATCAGATACAG : GAGATTGACTCATTTTGATGTTGACACATTTGTTGAGGAGGTGCTTGTGAAGGATGGTGAATGGTTGCCTGGAAATCCTGAAGCTCTGACTGGATGGTACATATTTGTGTGTTGTCATGGTT</gDNA_template>
            <first_frame> E  N  L  *  V  K  K  L  Q  T  H  R  *  W  R  T  E  T  I  S  *  T  L  T  L  L  L  L  L  L  F  P  M  P  T  A  S  F  *  I  L  L  R  S  V  A  L  L  E  A  S  R  T  R  V  F  S  P  V  L  M  A  A  P  P  P  L  L  M  L  S  L  V  S  P  V  L  I  F  A  R  R  S  L  L  V  L  L  I  S  M  N  A  T  C  S  F  A  I  R  I  L  K  F  G  L  L  V  L  R  L  L  S  L  I  D  C  L  G  F  L  L  L  L  L  P  L  G  R  M  M  L  R  N  R :   L  G  *  Q  Y  V  K  G  M  M  E  L  R  H  R  M  G  M  C  *  S  F  R  T  *  S  D  T   : G  D  *  L  I  L  M  L  T  H  L  L  R  R  C  L  *  R  M  V  N  G  C  L  E  I  L  K  L  *  L  D  G  T  Y  L  C  V  V  M  V </first_frame>
            <second_frame>  R  T  Y  E  S  K  S  F  K  L  T  V  N  G  E  Q  R  R  F  H  K  P  *  H  F  F  S  C  Y  C  F  R  C  R  Q  L  P  S  R  F  F  S  D  R  *  R  F  W  K  L  P  E  R  G  F  S  L  R  C  *  W  R  R  R  R  R  C  *  C  *  V  W  F  L  P  S  *  F  S  P  D  A  A  C  W  Y  C  *  F  L  *  T  P  R  V  P  L  L  *  E  S  S  S  L  A  S  S  Y  *  G  C  *  V  *  S  I  A  *  A  S  C  C  C  S  Y  R  S  E  E  *  C  *  E  T   : D  S  V  D  N  M  *  R  A  *  W  N  *  D  I  E  W  G  C  V  D  L  S  G  H  D  Q  I  Q  :  E  I  D  S  F  *  C  *  H  I  C  *  G  G  A  C  E  G  W  *  M  V  A  W  K  S  *  S  S  D  W  M  V  H  I  C  V  L  S  W   </second_frame>
            <third_frame>   E  L  M  S  Q  K  A  S  N  S  P  L  M  A  N  R  D  D  F  I  N  P  N  T  S  S  P  V  T  V  S  D  A  D  S  F  L  L  D  S  S  Q  I  G  S  A  S  G  S  F  Q  N  E  G  F  L  S  G  A  D  G  G  A  A  A  A  A  D  A  E  F  G  F  S  R  P  D  F  R  Q  T  Q  L  V  G  T  V  D  F  Y  E  R  H  V  F  L  C  Y  K  N  P  Q  V  W  P  P  R  I  E  A  A  E  F  D  R  L  P  R  L  L  A  A  A  L  T  A  R  K  N  D  V  K  K  Q  :  T  R  L  T  I  C  E  G  H  D  G  T  E  T  S  N  G  D  V  L  I  F  P  D  M  I  R  Y  R :   R  L  T  H  F  D  V  D  T  F  V  E  E  V  L  V  K  D  G  E  W  L  P  G  N  P  E  A  L  T  G  W  Y  I  F  V  C  C  H  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63165" stop="63566"/>
                    <exon start="64795" stop="64880"/>
                    <exon start="64967" stop="65087"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELMSQKASNSPLMANRDDFINPNTSSPVTVSDADSFLLDSSQIGSASGSFQNEGFLSGADGGAAAAADAEFGFSRPDFRQTQLVGTVDFYERHVFLCYKNPQVWPPRIEAAEFDRLPRLLAAALTARKNDVKKQTRLTICEGHDGTETSNGDVLIFPDMIRYRRLTHFDVDTFVEEVLVKDGEWLPGNPEALTGWYIFVCCHG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="65241" PGL_stop="66740"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65241" e_stop="65272"/>
            <exon e_start="65386" e_stop="65469"/>
            <exon e_start="66029" e_stop="66740"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65241" e_stop="65272" e_length="32"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.999">
            <gDNA_intron_boundary i_start="65273" i_stop="65385" i_length="113"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65386" e_stop="65469" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="65470" i_stop="66028" i_length="559"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="66029" e_stop="66740" e_length="712"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65241" stop="65272"/>
              <exon start="65386" stop="65469"/>
              <exon start="66029" stop="66620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65241" stop="65272"/>
              <exon start="65386" stop="65469"/>
              <exon start="66029" stop="66234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65420" stop="65469"/>
              <exon start="66029" stop="66740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380025" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAAACACTCACAAGGAAGTCTCCGGACACTG : GTATGGCTATGTTACACCTGATGATGTACCACAGTTGCTTGAACAGCATGTTGCTAAAGGAGAGATTGTTGATTGGTTGTGGAG : GGGCCAGATGGGGCTATCTGAAGATGAACAGAAAGCATCCCAACAACATAGGCTCAGCATTTATGGTGGAACAGATGTGGACAGAGGCACCATAAACTCAAATGATGTTGGTATTCGCACATGTGGATCCCAATTAGAGGGTATGGGCTGTTGCCAGGCAAATGGAAATGTCTCATGTTGTCAGACCACTCAACCACCAGTTGATGCAGACAATTTCAATCTCAACCAAGAGAACGCTGAGTTTACAACCGAAAAGAAGAGCAGCTTCAAGAGACAAGTTTCTCGAAGTAGCAGTGGCAAAGGGACTCGTTCTCGCAAGGTGTGCTCAATGCCTACTTGGTACGAGAGCTGGGAGCGTGAAGATACGTATGCAGTTCTTGCTGTTGTTGGTGCTGCCATATCAGTTGCCTATGCCTTCAACTGCTACAGACAGCTGAAGTAATATTATTTATAAAGAAGTTCACATTTGATTTCATTGTTGGTTAAAAACAATTATGTGCTTTGTCTAATGTAAATTTAGGTTATTGCATGTGTGTAAGTCACTTGCAATGAAGTCTAGAATTTGATTTACTTGGGGGGATAACATTTATGCCAAATAGTGTTGTAATGATAGACTATTGGTTCTGTAAATTTAGGAGCCTTCTTTTGTTTGCATGTTTCCAACACTTCCTGGTGTCTGAAGTGTTTGTTTGATCTTTGAATCTGTTGGCTC</gDNA_template>
            <first_frame> R  N  T  H  K  E  V  S  G  H  W :   Y  G  Y  V  T  P  D  D  V  P  Q  L  L  E  Q  H  V  A  K  G  E  I  V  D  W  L  W  R :   G  Q  M  G  L  S  E  D  E  Q  K  A  S  Q  Q  H  R  L  S  I  Y  G  G  T  D  V  D  R  G  T  I  N  S  N  D  V  G  I  R  T  C  G  S  Q  L  E  G  M  G  C  C  Q  A  N  G  N  V  S  C  C  Q  T  T  Q  P  P  V  D  A  D  N  F  N  L  N  Q  E  N  A  E  F  T  T  E  K  K  S  S  F  K  R  Q  V  S  R  S  S  S  G  K  G  T  R  S  R  K  V  C  S  M  P  T  W  Y  E  S  W  E  R  E  D  T  Y  A  V  L  A  V  V  G  A  A  I  S  V  A  Y  A  F  N  C  Y  R  Q  L  K  *  Y  Y  L  *  R  S  S  H  L  I  S  L  L  V  K  N  N  Y  V  L  C  L  M  *  I  *  V  I  A  C  V  *  V  T  C  N  E  V  *  N  L  I  Y  L  G  G  *  H  L  C  Q  I  V  L  *  *  *  T  I  G  S  V  N  L  G  A  F  F  C  L  H  V  S  N  T  S  W  C  L  K  C  L  F  D  L  *  I  C  W  L </first_frame>
            <second_frame>  E  T  L  T  R  K  S  P  D  T   : G  M  A  M  L  H  L  M  M  Y  H  S  C  L  N  S  M  L  L  K  E  R  L  L  I  G  C  G   : G  A  R  W  G  Y  L  K  M  N  R  K  H  P  N  N  I  G  S  A  F  M  V  E  Q  M  W  T  E  A  P  *  T  Q  M  M  L  V  F  A  H  V  D  P  N  *  R  V  W  A  V  A  R  Q  M  E  M  S  H  V  V  R  P  L  N  H  Q  L  M  Q  T  I  S  I  S  T  K  R  T  L  S  L  Q  P  K  R  R  A  A  S  R  D  K  F  L  E  V  A  V  A  K  G  L  V  L  A  R  C  A  Q  C  L  L  G  T  R  A  G  S  V  K  I  R  M  Q  F  L  L  L  L  V  L  P  Y  Q  L  P  M  P  S  T  A  T  D  S  *  S  N  I  I  Y  K  E  V  H  I  *  F  H  C  W  L  K  T  I  M  C  F  V  *  C  K  F  R  L  L  H  V  C  K  S  L  A  M  K  S  R  I  *  F  T  W  G  D  N  I  Y  A  K  *  C  C  N  D  R  L  L  V  L  *  I  *  E  P  S  F  V  C  M  F  P  T  L  P  G  V  *  S  V  C  L  I  F  E  S  V  G   </second_frame>
            <third_frame>   K  H  S  Q  G  S  L  R  T  L  :  V  W  L  C  Y  T  *  *  C  T  T  V  A  *  T  A  C  C  *  R  R  D  C  *  L  V  V  E  :  G  P  D  G  A  I  *  R  *  T  E  S  I  P  T  T  *  A  Q  H  L  W  W  N  R  C  G  Q  R  H  H  K  L  K  *  C  W  Y  S  H  M  W  I  P  I  R  G  Y  G  L  L  P  G  K  W  K  C  L  M  L  S  D  H  S  T  T  S  *  C  R  Q  F  Q  S  Q  P  R  E  R  *  V  Y  N  R  K  E  E  Q  L  Q  E  T  S  F  S  K  *  Q  W  Q  R  D  S  F  S  Q  G  V  L  N  A  Y  L  V  R  E  L  G  A  *  R  Y  V  C  S  S  C  C  C  W  C  C  H  I  S  C  L  C  L  Q  L  L  Q  T  A  E  V  I  L  F  I  K  K  F  T  F  D  F  I  V  G  *  K  Q  L  C  A  L  S  N  V  N  L  G  Y  C  M  C  V  S  H  L  Q  *  S  L  E  F  D  L  L  G  G  I  T  F  M  P  N  S  V  V  M  I  D  Y  W  F  C  K  F  R  S  L  L  L  F  A  C  F  Q  H  F  L  V  S  E  V  F  V  *  S  L  N  L  L  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65241" stop="65272"/>
                    <exon start="65386" stop="65469"/>
                    <exon start="66029" stop="66470"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNTHKEVSGHWYGYVTPDDVPQLLEQHVAKGEIVDWLWRGQMGLSEDEQKASQQHRLSIYGGTDVDRGTINSNDVGIRTCGSQLEGMGCCQANGNVSCCQTTQPPVDADNFNLNQENAEFTTEKKSSFKRQVSRSSSGKGTRSRKVCSMPTWYESWEREDTYAVLAVVGAAISVAYAFNCYRQLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="71980" PGL_stop="67139"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71980" e_stop="71671"/>
            <exon e_start="71568" e_stop="71540"/>
            <exon e_start="70495" e_stop="70412"/>
            <exon e_start="70311" e_stop="70258"/>
            <exon e_start="70134" e_stop="70057"/>
            <exon e_start="69924" e_stop="69871"/>
            <exon e_start="69741" e_stop="69682"/>
            <exon e_start="69594" e_stop="69499"/>
            <exon e_start="68439" e_stop="68337"/>
            <exon e_start="68258" e_stop="68178"/>
            <exon e_start="67681" e_stop="67139"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.936" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.519" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.799" acc_prob="0.549" e_score="1.000"/>
          <exon-intron don_prob="0.882" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.908" acc_prob="0.558" e_score="0.961"/>
          <exon-intron don_prob="0.983" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71980" e_stop="71671" e_length="310"/>
          </exon>
          <intron i_serial="1" don_prob="0.936" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71670" i_stop="71569" i_length="102"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71568" e_stop="71540" e_length="29"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="71539" i_stop="70496" i_length="1044"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70495" e_stop="70412" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.519">
            <gDNA_intron_boundary i_start="70411" i_stop="70312" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70311" e_stop="70258" e_length="54"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.984">
            <gDNA_intron_boundary i_start="70257" i_stop="70135" i_length="123"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70134" e_stop="70057" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70056" i_stop="69925" i_length="132"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69924" e_stop="69871" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.799" acc_prob="0.549">
            <gDNA_intron_boundary i_start="69870" i_stop="69742" i_length="129"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="69741" e_stop="69682" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.882" acc_prob="0.989">
            <gDNA_intron_boundary i_start="69681" i_stop="69595" i_length="87"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="69594" e_stop="69499" e_length="96"/>
          </exon>
          <intron i_serial="8" don_prob="0.975" acc_prob="0.947">
            <gDNA_intron_boundary i_start="69498" i_stop="68440" i_length="1059"/>
          </intron>
          <exon e_serial="9" e_score="0.961">
            <gDNA_exon_boundary e_start="68439" e_stop="68337" e_length="103"/>
          </exon>
          <intron i_serial="9" don_prob="0.908" acc_prob="0.558">
            <gDNA_intron_boundary i_start="68336" i_stop="68259" i_length="78"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="68258" e_stop="68178" e_length="81"/>
          </exon>
          <intron i_serial="10" don_prob="0.983" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68177" i_stop="67682" i_length="496"/>
          </intron>
          <exon e_serial="11" e_score="0.994">
            <gDNA_exon_boundary e_start="67681" e_stop="67139" e_length="543"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71980" stop="71671"/>
              <exon start="71568" stop="71540"/>
              <exon start="70495" stop="70412"/>
              <exon start="70311" stop="70258"/>
              <exon start="70134" stop="70057"/>
              <exon start="69924" stop="69871"/>
              <exon start="69741" stop="69682"/>
              <exon start="69594" stop="69582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71921" stop="71671"/>
              <exon start="71568" stop="71540"/>
              <exon start="70495" stop="70412"/>
              <exon start="70311" stop="70258"/>
              <exon start="70134" stop="70057"/>
              <exon start="69924" stop="69871"/>
              <exon start="69741" stop="69733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71914" stop="71671"/>
              <exon start="71568" stop="71540"/>
              <exon start="70495" stop="70412"/>
              <exon start="70311" stop="70258"/>
              <exon start="70134" stop="70057"/>
              <exon start="69924" stop="69871"/>
              <exon start="69741" stop="69699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71914" stop="71671"/>
              <exon start="71568" stop="71540"/>
              <exon start="70495" stop="70412"/>
              <exon start="70311" stop="70258"/>
              <exon start="70134" stop="70072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71818" stop="71671"/>
              <exon start="71568" stop="71540"/>
              <exon start="70495" stop="70412"/>
              <exon start="70311" stop="70259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71811" stop="71671"/>
              <exon start="71568" stop="71540"/>
              <exon start="70495" stop="70412"/>
              <exon start="70311" stop="70258"/>
              <exon start="70134" stop="70057"/>
              <exon start="69924" stop="69871"/>
              <exon start="69741" stop="69682"/>
              <exon start="69594" stop="69499"/>
              <exon start="68439" stop="68342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71790" stop="71671"/>
              <exon start="71568" stop="71540"/>
              <exon start="70495" stop="70412"/>
              <exon start="70311" stop="70258"/>
              <exon start="70134" stop="70057"/>
              <exon start="69924" stop="69871"/>
              <exon start="69741" stop="69682"/>
              <exon start="69594" stop="69499"/>
              <exon start="68439" stop="68337"/>
              <exon start="68258" stop="68178"/>
              <exon start="67681" stop="67547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71718" stop="71671"/>
              <exon start="71568" stop="71540"/>
              <exon start="70495" stop="70412"/>
              <exon start="70311" stop="70258"/>
              <exon start="70134" stop="70057"/>
              <exon start="69924" stop="69871"/>
              <exon start="69741" stop="69682"/>
              <exon start="69594" stop="69499"/>
              <exon start="68439" stop="68337"/>
              <exon start="68258" stop="68178"/>
              <exon start="67681" stop="67528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69729" stop="69682"/>
              <exon start="69594" stop="69499"/>
              <exon start="68439" stop="68337"/>
              <exon start="68258" stop="68178"/>
              <exon start="67681" stop="67274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69729" stop="69682"/>
              <exon start="69594" stop="69499"/>
              <exon start="68439" stop="68337"/>
              <exon start="68258" stop="68178"/>
              <exon start="67681" stop="67319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69728" stop="69682"/>
              <exon start="69594" stop="69499"/>
              <exon start="68439" stop="68337"/>
              <exon start="68258" stop="68178"/>
              <exon start="67681" stop="67527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69516" stop="69499"/>
              <exon start="68439" stop="68337"/>
              <exon start="68258" stop="68178"/>
              <exon start="67681" stop="67139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550241" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68394" stop="68337"/>
              <exon start="68258" stop="68178"/>
              <exon start="67681" stop="67173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389672" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGCCTAAATTTAAGAAGATCTGACAATGAAGCAGCACCTTCAATTCTTGAGTCACTGTCCTATGAGGAAGAGGGAGGAGAGTGGAAATTGAGAACTTAAAGAAAAAGTTGCTTTTTTTTTCTTCACAAAATACAACAACCCCTCTTCCTCTTTAGACCCAAAATCTAGGGAAAAAGCAAGATTTTGAGGTTTTTTGATAATTTTAGGAGGTGGGTGTGAATCTTTTTTGGGTAAATTTATAGTGGGATCAAGAATGGTGTGTATAACTGAAGATATGATTAAGCAATTGCAGACTTCAATGGATGAAA : TTGCTGAGCCACTTCAGAAAACTTTCCAG : AATGTATATCAGGGGTATCGAACCGAGACACTGGTGAGGTTTCTCAAAGCTAGAGATGGCAGTGTGTCTAAAGCACACAAGATG : CTTGTTGACTGTTTAAATTGGAGGATAGACAATGAGATCGATCAGATACTTGCA : AAGCCAATTGTACCCACTGATTTTTATAGAGGAGTGAGGGACACTCAGCTTGTGGGGATGTCTGGATATACAAGAGAG : GGTCTTCCCGTCGTTGCTGTTGGAGTAGGCCTCAGCACATACGACAAAGCATCG : ATTCACTACTATATTCAATCACATATCCAAATGAATGAATACCGTGACCGTATAATATTG : CCGTCTGCATCAAAGAAATTTGGGCGGTATATTGGGACCTGTGTTAAGGTTTTGGACATGACTGGTCTAAAGCTTTCTGCGCTAAACCAAATTAAG : CTCTTAACTGCTATATCTACCATGATGACCCTAAATTATCCCTGAGAAGACAGATACATATTACATTGTTAATGCTCCATACATATTCTCAGCCTGCTGGAAG : GTTGTGAGACCTCTTTTACAAGAAAGAACTAAAAAGAAAGTCCAAGTGCTCTCCGGCTCGGGAAAAGATGAACTGTTGAAG : ATAATGGATTATGCATCGCTACCACACTTTTGTAAAAGAGAAGGCTCGGGTTCATCTAAACATGGTAGAAATGGTACAAATGATAACTGTTTCTCCTTTGATCACGCTTTTCATCAGCAACTCTATGATTATACTAAGCAACAAGCTCTAGCATTAGAGGCTGTAGCACCAAGCAAAGAAGGATCTGTCCATGTGACCTTACCTGAGCCTGATCCAGATGATGCAAAGATTGCTGAAACAATTGAATCCACATTCCATAGAATGGGGGAGAAAAACGGAATTTGTCAATCATTTCATGAAATAAAGATCAATGGCGATTGAAGCTGATTCGCTGTAGTCTTGGTAACTGCTTATTTTGAATCCAGACGAGAGGATTTAAGTAAGCGTTGTTATAGTACTAATATGGCTTGCATCATCTCGATGCAGGATTTAGTTAGAAGCTAAGTTGTAACATGGCATTTACGCTACCTTGGAGTGGACTATCATATGAATAGTCAAAAATGTTTATGCTCCCCACAAAGTATTTTACGCGAATTTCGCTGA</gDNA_template>
            <first_frame> F  A  *  I  *  E  D  L  T  M  K  Q  H  L  Q  F  L  S  H  C  P  M  R  K  R  E  E  S  G  N  *  E  L  K  E  K  V  A  F  F  F  F  T  K  Y  N  N  P  S  S  S  L  D  P  K  S  R  E  K  A  R  F  *  G  F  L  I  I  L  G  G  G  C  E  S  F  L  G  K  F  I  V  G  S  R  M  V  C  I  T  E  D  M  I  K  Q  L  Q  T  S  M  D  E   : I  A  E  P  L  Q  K  T  F  Q  :  N  V  Y  Q  G  Y  R  T  E  T  L  V  R  F  L  K  A  R  D  G  S  V  S  K  A  H  K  M  :  L  V  D  C  L  N  W  R  I  D  N  E  I  D  Q  I  L  A  :  K  P  I  V  P  T  D  F  Y  R  G  V  R  D  T  Q  L  V  G  M  S  G  Y  T  R  E  :  G  L  P  V  V  A  V  G  V  G  L  S  T  Y  D  K  A  S  :  I  H  Y  Y  I  Q  S  H  I  Q  M  N  E  Y  R  D  R  I  I  L  :  P  S  A  S  K  K  F  G  R  Y  I  G  T  C  V  K  V  L  D  M  T  G  L  K  L  S  A  L  N  Q  I  K  :  L  L  T  A  I  S  T  M  M  T  L  N  Y  P  *  E  D  R  Y  I  L  H  C  *  C  S  I  H  I  L  S  L  L  E   : G  C  E  T  S  F  T  R  K  N  *  K  E  S  P  S  A  L  R  L  G  K  R  *  T  V  E   : D  N  G  L  C  I  A  T  T  L  L  *  K  R  R  L  G  F  I  *  T  W  *  K  W  Y  K  *  *  L  F  L  L  *  S  R  F  S  S  A  T  L  *  L  Y  *  A  T  S  S  S  I  R  G  C  S  T  K  Q  R  R  I  C  P  C  D  L  T  *  A  *  S  R  *  C  K  D  C  *  N  N  *  I  H  I  P  *  N  G  G  E  K  R  N  L  S  I  I  S  *  N  K  D  Q  W  R  L  K  L  I  R  C  S  L  G  N  C  L  F  *  I  Q  T  R  G  F  K  *  A  L  L  *  Y  *  Y  G  L  H  H  L  D  A  G  F  S  *  K  L  S  C  N  M  A  F  T  L  P  W  S  G  L  S  Y  E  *  S  K  M  F  M  L  P  T  K  Y  F  T  R  I  S  L  </first_frame>
            <second_frame>  L  P  K  F  K  K  I  *  Q  *  S  S  T  F  N  S  *  V  T  V  L  *  G  R  G  R  R  V  E  I  E  N  L  K  K  K  L  L  F  F  S  S  Q  N  T  T  T  P  L  P  L  *  T  Q  N  L  G  K  K  Q  D  F  E  V  F  *  *  F  *  E  V  G  V  N  L  F  W  V  N  L  *  W  D  Q  E  W  C  V  *  L  K  I  *  L  S  N  C  R  L  Q  W  M  K  :  L  L  S  H  F  R  K  L  S  R :   M  Y  I  R  G  I  E  P  R  H  W  *  G  F  S  K  L  E  M  A  V  C  L  K  H  T  R  C :   L  L  T  V  *  I  G  G  *  T  M  R  S  I  R  Y  L  Q :   S  Q  L  Y  P  L  I  F  I  E  E  *  G  T  L  S  L  W  G  C  L  D  I  Q  E  R :   V  F  P  S  L  L  L  E  *  A  S  A  H  T  T  K  H  R :   F  T  T  I  F  N  H  I  S  K  *  M  N  T  V  T  V  *  Y  C :   R  L  H  Q  R  N  L  G  G  I  L  G  P  V  L  R  F  W  T  *  L  V  *  S  F  L  R  *  T  K  L  S :   S  *  L  L  Y  L  P  *  *  P  *  I  I  P  E  K  T  D  T  Y  Y  I  V  N  A  P  Y  I  F  S  A  C  W  K  :  V  V  R  P  L  L  Q  E  R  T  K  K  K  V  Q  V  L  S  G  S  G  K  D  E  L  L  K  :  I  M  D  Y  A  S  L  P  H  F  C  K  R  E  G  S  G  S  S  K  H  G  R  N  G  T  N  D  N  C  F  S  F  D  H  A  F  H  Q  Q  L  Y  D  Y  T  K  Q  Q  A  L  A  L  E  A  V  A  P  S  K  E  G  S  V  H  V  T  L  P  E  P  D  P  D  D  A  K  I  A  E  T  I  E  S  T  F  H  R  M  G  E  K  N  G  I  C  Q  S  F  H  E  I  K  I  N  G  D  *  S  *  F  A  V  V  L  V  T  A  Y  F  E  S  R  R  E  D  L  S  K  R  C  Y  S  T  N  M  A  C  I  I  S  M  Q  D  L  V  R  S  *  V  V  T  W  H  L  R  Y  L  G  V  D  Y  H  M  N  S  Q  K  C  L  C  S  P  Q  S  I  L  R  E  F  R  * </second_frame>
            <third_frame>   C  L  N  L  R  R  S  D  N  E  A  A  P  S  I  L  E  S  L  S  Y  E  E  E  G  G  E  W  K  L  R  T  *  R  K  S  C  F  F  F  L  H  K  I  Q  Q  P  L  F  L  F  R  P  K  I  *  G  K  S  K  I  L  R  F  F  D  N  F  R  R  W  V  *  I  F  F  G  *  I  Y  S  G  I  K  N  G  V  Y  N  *  R  Y  D  *  A  I  A  D  F  N  G  *  N :   C  *  A  T  S  E  N  F  P   : E  C  I  S  G  V  S  N  R  D  T  G  E  V  S  Q  S  *  R  W  Q  C  V  *  S  T  Q  D   : A  C  *  L  F  K  L  E  D  R  Q  *  D  R  S  D  T  C   : K  A  N  C  T  H  *  F  L  *  R  S  E  G  H  S  A  C  G  D  V  W  I  Y  K  R   : G  S  S  R  R  C  C  W  S  R  P  Q  H  I  R  Q  S  I   : D  S  L  L  Y  S  I  T  Y  P  N  E  *  I  P  *  P  Y  N  I   : A  V  C  I  K  E  I  W  A  V  Y  W  D  L  C  *  G  F  G  H  D  W  S  K  A  F  C  A  K  P  N  *   : A  L  N  C  Y  I  Y  H  D  D  P  K  L  S  L  R  R  Q  I  H  I  T  L  L  M  L  H  T  Y  S  Q  P  A  G  R :   L  *  D  L  F  Y  K  K  E  L  K  R  K  S  K  C  S  P  A  R  E  K  M  N  C  *  R :   *  W  I  M  H  R  Y  H  T  F  V  K  E  K  A  R  V  H  L  N  M  V  E  M  V  Q  M  I  T  V  S  P  L  I  T  L  F  I  S  N  S  M  I  I  L  S  N  K  L  *  H  *  R  L  *  H  Q  A  K  K  D  L  S  M  *  P  Y  L  S  L  I  Q  M  M  Q  R  L  L  K  Q  L  N  P  H  S  I  E  W  G  R  K  T  E  F  V  N  H  F  M  K  *  R  S  M  A  I  E  A  D  S  L  *  S  W  *  L  L  I  L  N  P  D  E  R  I  *  V  S  V  V  I  V  L  I  W  L  A  S  S  R  C  R  I  *  L  E  A  K  L  *  H  G  I  Y  A  T  L  E  W  T  I  I  *  I  V  K  N  V  Y  A  P  H  K  V  F  Y  A  N  F  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71791" stop="71671"/>
                    <exon start="71568" stop="71540"/>
                    <exon start="70495" stop="70412"/>
                    <exon start="70311" stop="70258"/>
                    <exon start="70134" stop="70057"/>
                    <exon start="69924" stop="69871"/>
                    <exon start="69741" stop="69682"/>
                    <exon start="69594" stop="69499"/>
                    <exon start="68439" stop="68395"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFLIILGGGCESFLGKFIVGSRMVCITEDMIKQLQTSMDEIAEPLQKTFQNVYQGYRTETLVRFLKARDGSVSKAHKMLVDCLNWRIDNEIDQILAKPIVPTDFYRGVRDTQLVGMSGYTREGLPVVAVGVGLSTYDKASIHYYIQSHIQMNEYRDRIILPSASKKFGRYIGTCVKVLDMTGLKLSALNQIKLLTAISTMMTLNYP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68405" stop="68337"/>
                    <exon start="68258" stop="68178"/>
                    <exon start="67681" stop="67361"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIPEKTDTYYIVNAPYIFSACWKVVRPLLQERTKKKVQVLSGSGKDELLKIMDYASLPHFCKREGSGSSKHGRNGTNDNCFSFDHAFHQQLYDYTKQQALALEAVAPSKEGSVHVTLPEPDPDDAKIAETIESTFHRMGEKNGICQSFHEIKINGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="71980" e_stop="71671"/>
            <exon e_start="71568" e_stop="71540"/>
            <exon e_start="70495" e_stop="70412"/>
            <exon e_start="70311" e_stop="70258"/>
            <exon e_start="70134" e_stop="70057"/>
            <exon e_start="69924" e_stop="69871"/>
            <exon e_start="69741" e_stop="69682"/>
            <exon e_start="69594" e_stop="69499"/>
            <exon e_start="68439" e_stop="68337"/>
            <exon e_start="68258" e_stop="67701"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.936" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.519" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.799" acc_prob="0.549" e_score="1.000"/>
          <exon-intron don_prob="0.882" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.908" acc_prob="0.558" e_score="0.959"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71980" e_stop="71671" e_length="310"/>
          </exon>
          <intron i_serial="1" don_prob="0.936" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71670" i_stop="71569" i_length="102"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71568" e_stop="71540" e_length="29"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="71539" i_stop="70496" i_length="1044"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70495" e_stop="70412" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.519">
            <gDNA_intron_boundary i_start="70411" i_stop="70312" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70311" e_stop="70258" e_length="54"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.984">
            <gDNA_intron_boundary i_start="70257" i_stop="70135" i_length="123"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70134" e_stop="70057" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70056" i_stop="69925" i_length="132"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69924" e_stop="69871" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.799" acc_prob="0.549">
            <gDNA_intron_boundary i_start="69870" i_stop="69742" i_length="129"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="69741" e_stop="69682" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.882" acc_prob="0.989">
            <gDNA_intron_boundary i_start="69681" i_stop="69595" i_length="87"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="69594" e_stop="69499" e_length="96"/>
          </exon>
          <intron i_serial="8" don_prob="0.975" acc_prob="0.947">
            <gDNA_intron_boundary i_start="69498" i_stop="68440" i_length="1059"/>
          </intron>
          <exon e_serial="9" e_score="0.959">
            <gDNA_exon_boundary e_start="68439" e_stop="68337" e_length="103"/>
          </exon>
          <intron i_serial="9" don_prob="0.908" acc_prob="0.558">
            <gDNA_intron_boundary i_start="68336" i_stop="68259" i_length="78"/>
          </intron>
          <exon e_serial="10" e_score="0.998">
            <gDNA_exon_boundary e_start="68258" e_stop="67701" e_length="558"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71980" stop="71671"/>
              <exon start="71568" stop="71540"/>
              <exon start="70495" stop="70412"/>
              <exon start="70311" stop="70258"/>
              <exon start="70134" stop="70057"/>
              <exon start="69924" stop="69871"/>
              <exon start="69741" stop="69682"/>
              <exon start="69594" stop="69582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71921" stop="71671"/>
              <exon start="71568" stop="71540"/>
              <exon start="70495" stop="70412"/>
              <exon start="70311" stop="70258"/>
              <exon start="70134" stop="70057"/>
              <exon start="69924" stop="69871"/>
              <exon start="69741" stop="69733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71914" stop="71671"/>
              <exon start="71568" stop="71540"/>
              <exon start="70495" stop="70412"/>
              <exon start="70311" stop="70258"/>
              <exon start="70134" stop="70057"/>
              <exon start="69924" stop="69871"/>
              <exon start="69741" stop="69699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71914" stop="71671"/>
              <exon start="71568" stop="71540"/>
              <exon start="70495" stop="70412"/>
              <exon start="70311" stop="70258"/>
              <exon start="70134" stop="70072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71818" stop="71671"/>
              <exon start="71568" stop="71540"/>
              <exon start="70495" stop="70412"/>
              <exon start="70311" stop="70259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71811" stop="71671"/>
              <exon start="71568" stop="71540"/>
              <exon start="70495" stop="70412"/>
              <exon start="70311" stop="70258"/>
              <exon start="70134" stop="70057"/>
              <exon start="69924" stop="69871"/>
              <exon start="69741" stop="69682"/>
              <exon start="69594" stop="69499"/>
              <exon start="68439" stop="68342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68393" stop="68337"/>
              <exon start="68258" stop="67701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311752" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGCCTAAATTTAAGAAGATCTGACAATGAAGCAGCACCTTCAATTCTTGAGTCACTGTCCTATGAGGAAGAGGGAGGAGAGTGGAAATTGAGAACTTAAAGAAAAAGTTGCTTTTTTTTTCTTCACAAAATACAACAACCCCTCTTCCTCTTTAGACCCAAAATCTAGGGAAAAAGCAAGATTTTGAGGTTTTTTGATAATTTTAGGAGGTGGGTGTGAATCTTTTTTGGGTAAATTTATAGTGGGATCAAGAATGGTGTGTATAACTGAAGATATGATTAAGCAATTGCAGACTTCAATGGATGAAA : TTGCTGAGCCACTTCAGAAAACTTTCCAG : AATGTATATCAGGGGTATCGAACCGAGACACTGGTGAGGTTTCTCAAAGCTAGAGATGGCAGTGTGTCTAAAGCACACAAGATG : CTTGTTGACTGTTTAAATTGGAGGATAGACAATGAGATCGATCAGATACTTGCA : AAGCCAATTGTACCCACTGATTTTTATAGAGGAGTGAGGGACACTCAGCTTGTGGGGATGTCTGGATATACAAGAGAG : GGTCTTCCCGTCGTTGCTGTTGGAGTAGGCCTCAGCACATACGACAAAGCATCG : ATTCACTACTATATTCAATCACATATCCAAATGAATGAATACCGTGACCGTATAATATTG : CCGTCTGCATCAAAGAAATTTGGGCGGTATATTGGGACCTGTGTTAAGGTTTTGGACATGACTGGTCTAAAGCTTTCTGCGCTAAACCAAATTAAG : CTCTTAACTGCTATATCTACCATGATGACCCTAAATTATCCCTGAGAAGACAGATACATATTACATTGTTAATGCTCCATACATATTCTCAGCCTGCTGGAAG : GTTGTGAGACCTCTTTTACAAGAAAGAACTAAAAAGAAAGTCCAAGTGCTCTCCGGCTCGGGAAAAGATGAACTGTTGAAGGTAAGATGTCTTTTTTCTTTTGAGTGGAAGGATCAAATACACCAGCTGAACTATCACCAAATGTTTATCAAAACACACCTCAACTATTAGTTTTTCCATTATCACACCCAAACCAAGTAGGAAAAGGGAAAAACTTCTAGTTGAGTGTGTGTTTCGATACACAATTAATGATAGTTCAGCTAGAAAGGTAGTTTAGGTATGGAACTCGAAAAGTGGAATTCTTCATTTGTGTTTTTGACCCTTCCAACAATTTTTTTCTTATTATGAGTTATCAAAGGTAAGATGATGTTCTTTAAGTCGATTGCCTTTTATCCGTTGATTCTCTCACTTCAGGAGAGGCTTACTGTTGCAGATGAACTCAATACTATTCTTTGTAGTTTGTAGAATCCATCTTTATTCGCATTAATAATGTTTGGTCATATACCTCGTGTTTCTGAGGAATACTATACTTGACTTCAAATCTAACTAGAATTATCT</gDNA_template>
            <first_frame> F  A  *  I  *  E  D  L  T  M  K  Q  H  L  Q  F  L  S  H  C  P  M  R  K  R  E  E  S  G  N  *  E  L  K  E  K  V  A  F  F  F  F  T  K  Y  N  N  P  S  S  S  L  D  P  K  S  R  E  K  A  R  F  *  G  F  L  I  I  L  G  G  G  C  E  S  F  L  G  K  F  I  V  G  S  R  M  V  C  I  T  E  D  M  I  K  Q  L  Q  T  S  M  D  E   : I  A  E  P  L  Q  K  T  F  Q  :  N  V  Y  Q  G  Y  R  T  E  T  L  V  R  F  L  K  A  R  D  G  S  V  S  K  A  H  K  M  :  L  V  D  C  L  N  W  R  I  D  N  E  I  D  Q  I  L  A  :  K  P  I  V  P  T  D  F  Y  R  G  V  R  D  T  Q  L  V  G  M  S  G  Y  T  R  E  :  G  L  P  V  V  A  V  G  V  G  L  S  T  Y  D  K  A  S  :  I  H  Y  Y  I  Q  S  H  I  Q  M  N  E  Y  R  D  R  I  I  L  :  P  S  A  S  K  K  F  G  R  Y  I  G  T  C  V  K  V  L  D  M  T  G  L  K  L  S  A  L  N  Q  I  K  :  L  L  T  A  I  S  T  M  M  T  L  N  Y  P  *  E  D  R  Y  I  L  H  C  *  C  S  I  H  I  L  S  L  L  E   : G  C  E  T  S  F  T  R  K  N  *  K  E  S  P  S  A  L  R  L  G  K  R  *  T  V  E  G  K  M  S  F  F  F  *  V  E  G  S  N  T  P  A  E  L  S  P  N  V  Y  Q  N  T  P  Q  L  L  V  F  P  L  S  H  P  N  Q  V  G  K  G  K  N  F  *  L  S  V  C  F  D  T  Q  L  M  I  V  Q  L  E  R  *  F  R  Y  G  T  R  K  V  E  F  F  I  C  V  F  D  P  S  N  N  F  F  L  I  M  S  Y  Q  R  *  D  D  V  L  *  V  D  C  L  L  S  V  D  S  L  T  S  G  E  A  Y  C  C  R  *  T  Q  Y  Y  S  L  *  F  V  E  S  I  F  I  R  I  N  N  V  W  S  Y  T  S  C  F  *  G  I  L  Y  L  T  S  N  L  T  R  I  I  </first_frame>
            <second_frame>  L  P  K  F  K  K  I  *  Q  *  S  S  T  F  N  S  *  V  T  V  L  *  G  R  G  R  R  V  E  I  E  N  L  K  K  K  L  L  F  F  S  S  Q  N  T  T  T  P  L  P  L  *  T  Q  N  L  G  K  K  Q  D  F  E  V  F  *  *  F  *  E  V  G  V  N  L  F  W  V  N  L  *  W  D  Q  E  W  C  V  *  L  K  I  *  L  S  N  C  R  L  Q  W  M  K  :  L  L  S  H  F  R  K  L  S  R :   M  Y  I  R  G  I  E  P  R  H  W  *  G  F  S  K  L  E  M  A  V  C  L  K  H  T  R  C :   L  L  T  V  *  I  G  G  *  T  M  R  S  I  R  Y  L  Q :   S  Q  L  Y  P  L  I  F  I  E  E  *  G  T  L  S  L  W  G  C  L  D  I  Q  E  R :   V  F  P  S  L  L  L  E  *  A  S  A  H  T  T  K  H  R :   F  T  T  I  F  N  H  I  S  K  *  M  N  T  V  T  V  *  Y  C :   R  L  H  Q  R  N  L  G  G  I  L  G  P  V  L  R  F  W  T  *  L  V  *  S  F  L  R  *  T  K  L  S :   S  *  L  L  Y  L  P  *  *  P  *  I  I  P  E  K  T  D  T  Y  Y  I  V  N  A  P  Y  I  F  S  A  C  W  K  :  V  V  R  P  L  L  Q  E  R  T  K  K  K  V  Q  V  L  S  G  S  G  K  D  E  L  L  K  V  R  C  L  F  S  F  E  W  K  D  Q  I  H  Q  L  N  Y  H  Q  M  F  I  K  T  H  L  N  Y  *  F  F  H  Y  H  T  Q  T  K  *  E  K  G  K  T  S  S  *  V  C  V  S  I  H  N  *  *  *  F  S  *  K  G  S  L  G  M  E  L  E  K  W  N  S  S  F  V  F  L  T  L  P  T  I  F  F  L  L  *  V  I  K  G  K  M  M  F  F  K  S  I  A  F  Y  P  L  I  L  S  L  Q  E  R  L  T  V  A  D  E  L  N  T  I  L  C  S  L  *  N  P  S  L  F  A  L  I  M  F  G  H  I  P  R  V  S  E  E  Y  Y  T  *  L  Q  I  *  L  E  L  S </second_frame>
            <third_frame>   C  L  N  L  R  R  S  D  N  E  A  A  P  S  I  L  E  S  L  S  Y  E  E  E  G  G  E  W  K  L  R  T  *  R  K  S  C  F  F  F  L  H  K  I  Q  Q  P  L  F  L  F  R  P  K  I  *  G  K  S  K  I  L  R  F  F  D  N  F  R  R  W  V  *  I  F  F  G  *  I  Y  S  G  I  K  N  G  V  Y  N  *  R  Y  D  *  A  I  A  D  F  N  G  *  N :   C  *  A  T  S  E  N  F  P   : E  C  I  S  G  V  S  N  R  D  T  G  E  V  S  Q  S  *  R  W  Q  C  V  *  S  T  Q  D   : A  C  *  L  F  K  L  E  D  R  Q  *  D  R  S  D  T  C   : K  A  N  C  T  H  *  F  L  *  R  S  E  G  H  S  A  C  G  D  V  W  I  Y  K  R   : G  S  S  R  R  C  C  W  S  R  P  Q  H  I  R  Q  S  I   : D  S  L  L  Y  S  I  T  Y  P  N  E  *  I  P  *  P  Y  N  I   : A  V  C  I  K  E  I  W  A  V  Y  W  D  L  C  *  G  F  G  H  D  W  S  K  A  F  C  A  K  P  N  *   : A  L  N  C  Y  I  Y  H  D  D  P  K  L  S  L  R  R  Q  I  H  I  T  L  L  M  L  H  T  Y  S  Q  P  A  G  R :   L  *  D  L  F  Y  K  K  E  L  K  R  K  S  K  C  S  P  A  R  E  K  M  N  C  *  R  *  D  V  F  F  L  L  S  G  R  I  K  Y  T  S  *  T  I  T  K  C  L  S  K  H  T  S  T  I  S  F  S  I  I  T  P  K  P  S  R  K  R  E  K  L  L  V  E  C  V  F  R  Y  T  I  N  D  S  S  A  R  K  V  V  *  V  W  N  S  K  S  G  I  L  H  L  C  F  *  P  F  Q  Q  F  F  S  Y  Y  E  L  S  K  V  R  *  C  S  L  S  R  L  P  F  I  R  *  F  S  H  F  R  R  G  L  L  L  Q  M  N  S  I  L  F  F  V  V  C  R  I  H  L  Y  S  H  *  *  C  L  V  I  Y  L  V  F  L  R  N  T  I  L  D  F  K  S  N  *  N  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71791" stop="71671"/>
                    <exon start="71568" stop="71540"/>
                    <exon start="70495" stop="70412"/>
                    <exon start="70311" stop="70258"/>
                    <exon start="70134" stop="70057"/>
                    <exon start="69924" stop="69871"/>
                    <exon start="69741" stop="69682"/>
                    <exon start="69594" stop="69499"/>
                    <exon start="68439" stop="68395"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFLIILGGGCESFLGKFIVGSRMVCITEDMIKQLQTSMDEIAEPLQKTFQNVYQGYRTETLVRFLKARDGSVSKAHKMLVDCLNWRIDNEIDQILAKPIVPTDFYRGVRDTQLVGMSGYTREGLPVVAVGVGLSTYDKASIHYYIQSHIQMNEYRDRIILPSASKKFGRYIGTCVKVLDMTGLKLSALNQIKLLTAISTMMTLNYP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68405" stop="68337"/>
                    <exon start="68258" stop="68088"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIPEKTDTYYIVNAPYIFSACWKVVRPLLQERTKKKVQVLSGSGKDELLKVRCLFSFEWKDQIHQLNYHQMFIKTHLNY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="71980" e_stop="71671"/>
            <exon e_start="71568" e_stop="71540"/>
            <exon e_start="70495" e_stop="70412"/>
            <exon e_start="70311" e_stop="70258"/>
            <exon e_start="70134" e_stop="70057"/>
            <exon e_start="69924" e_stop="69871"/>
            <exon e_start="69741" e_stop="69682"/>
            <exon e_start="69594" e_stop="69293"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.936" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.519" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.799" acc_prob="0.549" e_score="1.000"/>
          <exon-intron don_prob="0.882" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71980" e_stop="71671" e_length="310"/>
          </exon>
          <intron i_serial="1" don_prob="0.936" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71670" i_stop="71569" i_length="102"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71568" e_stop="71540" e_length="29"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="71539" i_stop="70496" i_length="1044"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70495" e_stop="70412" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.519">
            <gDNA_intron_boundary i_start="70411" i_stop="70312" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70311" e_stop="70258" e_length="54"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.984">
            <gDNA_intron_boundary i_start="70257" i_stop="70135" i_length="123"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70134" e_stop="70057" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70056" i_stop="69925" i_length="132"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69924" e_stop="69871" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.799" acc_prob="0.549">
            <gDNA_intron_boundary i_start="69870" i_stop="69742" i_length="129"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="69741" e_stop="69682" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.882" acc_prob="0.989">
            <gDNA_intron_boundary i_start="69681" i_stop="69595" i_length="87"/>
          </intron>
          <exon e_serial="8" e_score="0.993">
            <gDNA_exon_boundary e_start="69594" e_stop="69293" e_length="302"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71980" stop="71671"/>
              <exon start="71568" stop="71540"/>
              <exon start="70495" stop="70412"/>
              <exon start="70311" stop="70258"/>
              <exon start="70134" stop="70057"/>
              <exon start="69924" stop="69871"/>
              <exon start="69741" stop="69682"/>
              <exon start="69594" stop="69582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71921" stop="71671"/>
              <exon start="71568" stop="71540"/>
              <exon start="70495" stop="70412"/>
              <exon start="70311" stop="70258"/>
              <exon start="70134" stop="70057"/>
              <exon start="69924" stop="69871"/>
              <exon start="69741" stop="69733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71914" stop="71671"/>
              <exon start="71568" stop="71540"/>
              <exon start="70495" stop="70412"/>
              <exon start="70311" stop="70258"/>
              <exon start="70134" stop="70057"/>
              <exon start="69924" stop="69871"/>
              <exon start="69741" stop="69699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71914" stop="71671"/>
              <exon start="71568" stop="71540"/>
              <exon start="70495" stop="70412"/>
              <exon start="70311" stop="70258"/>
              <exon start="70134" stop="70072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71818" stop="71671"/>
              <exon start="71568" stop="71540"/>
              <exon start="70495" stop="70412"/>
              <exon start="70311" stop="70259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70279" stop="70258"/>
              <exon start="70134" stop="70057"/>
              <exon start="69924" stop="69871"/>
              <exon start="69741" stop="69682"/>
              <exon start="69594" stop="69293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300946" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGCCTAAATTTAAGAAGATCTGACAATGAAGCAGCACCTTCAATTCTTGAGTCACTGTCCTATGAGGAAGAGGGAGGAGAGTGGAAATTGAGAACTTAAAGAAAAAGTTGCTTTTTTTTTCTTCACAAAATACAACAACCCCTCTTCCTCTTTAGACCCAAAATCTAGGGAAAAAGCAAGATTTTGAGGTTTTTTGATAATTTTAGGAGGTGGGTGTGAATCTTTTTTGGGTAAATTTATAGTGGGATCAAGAATGGTGTGTATAACTGAAGATATGATTAAGCAATTGCAGACTTCAATGGATGAAA : TTGCTGAGCCACTTCAGAAAACTTTCCAG : AATGTATATCAGGGGTATCGAACCGAGACACTGGTGAGGTTTCTCAAAGCTAGAGATGGCAGTGTGTCTAAAGCACACAAGATG : CTTGTTGACTGTTTAAATTGGAGGATAGACAATGAGATCGATCAGATACTTGCA : AAGCCAATTGTACCCACTGATTTTTATAGAGGAGTGAGGGACACTCAGCTTGTGGGGATGTCTGGATATACAAGAGAG : GGTCTTCCCGTCGTTGCTGTTGGAGTAGGCCTCAGCACATACGACAAAGCATCG : ATTCACTACTATATTCAATCACATATCCAAATGAATGAATACCGTGACCGTATAATATTG : CCGTCTGCATCAAAGAAATTTGGGCGGTATATTGGGACCTGTGTTAAGGTTTTGGACATGACTGGTCTAAAGCTTTCTGCGCTAAACCAAATTAAGGTATCTCGTTATTTGTTTGACATTGTAATTATACTTCATCGACCTTCCTACCAAAATCCTACTGTGTAAATCCTTATCATCTTTTTTCTAGTCAACATTCTTCTTGGATGTATAGATTCACTTATTTCGCTGAAAATCTTTGGTTCTGCATTCGTCGTCCACACTAATAGTTCTTGTTAAAGTTTTGAAATGATGTTCAATTGTCA</gDNA_template>
            <first_frame> F  A  *  I  *  E  D  L  T  M  K  Q  H  L  Q  F  L  S  H  C  P  M  R  K  R  E  E  S  G  N  *  E  L  K  E  K  V  A  F  F  F  F  T  K  Y  N  N  P  S  S  S  L  D  P  K  S  R  E  K  A  R  F  *  G  F  L  I  I  L  G  G  G  C  E  S  F  L  G  K  F  I  V  G  S  R  M  V  C  I  T  E  D  M  I  K  Q  L  Q  T  S  M  D  E   : I  A  E  P  L  Q  K  T  F  Q  :  N  V  Y  Q  G  Y  R  T  E  T  L  V  R  F  L  K  A  R  D  G  S  V  S  K  A  H  K  M  :  L  V  D  C  L  N  W  R  I  D  N  E  I  D  Q  I  L  A  :  K  P  I  V  P  T  D  F  Y  R  G  V  R  D  T  Q  L  V  G  M  S  G  Y  T  R  E  :  G  L  P  V  V  A  V  G  V  G  L  S  T  Y  D  K  A  S  :  I  H  Y  Y  I  Q  S  H  I  Q  M  N  E  Y  R  D  R  I  I  L  :  P  S  A  S  K  K  F  G  R  Y  I  G  T  C  V  K  V  L  D  M  T  G  L  K  L  S  A  L  N  Q  I  K  V  S  R  Y  L  F  D  I  V  I  I  L  H  R  P  S  Y  Q  N  P  T  V  *  I  L  I  I  F  F  L  V  N  I  L  L  G  C  I  D  S  L  I  S  L  K  I  F  G  S  A  F  V  V  H  T  N  S  S  C  *  S  F  E  M  M  F  N  C   </first_frame>
            <second_frame>  L  P  K  F  K  K  I  *  Q  *  S  S  T  F  N  S  *  V  T  V  L  *  G  R  G  R  R  V  E  I  E  N  L  K  K  K  L  L  F  F  S  S  Q  N  T  T  T  P  L  P  L  *  T  Q  N  L  G  K  K  Q  D  F  E  V  F  *  *  F  *  E  V  G  V  N  L  F  W  V  N  L  *  W  D  Q  E  W  C  V  *  L  K  I  *  L  S  N  C  R  L  Q  W  M  K  :  L  L  S  H  F  R  K  L  S  R :   M  Y  I  R  G  I  E  P  R  H  W  *  G  F  S  K  L  E  M  A  V  C  L  K  H  T  R  C :   L  L  T  V  *  I  G  G  *  T  M  R  S  I  R  Y  L  Q :   S  Q  L  Y  P  L  I  F  I  E  E  *  G  T  L  S  L  W  G  C  L  D  I  Q  E  R :   V  F  P  S  L  L  L  E  *  A  S  A  H  T  T  K  H  R :   F  T  T  I  F  N  H  I  S  K  *  M  N  T  V  T  V  *  Y  C :   R  L  H  Q  R  N  L  G  G  I  L  G  P  V  L  R  F  W  T  *  L  V  *  S  F  L  R  *  T  K  L  R  Y  L  V  I  C  L  T  L  *  L  Y  F  I  D  L  P  T  K  I  L  L  C  K  S  L  S  S  F  F  *  S  T  F  F  L  D  V  *  I  H  L  F  R  *  K  S  L  V  L  H  S  S  S  T  L  I  V  L  V  K  V  L  K  *  C  S  I  V  </second_frame>
            <third_frame>   C  L  N  L  R  R  S  D  N  E  A  A  P  S  I  L  E  S  L  S  Y  E  E  E  G  G  E  W  K  L  R  T  *  R  K  S  C  F  F  F  L  H  K  I  Q  Q  P  L  F  L  F  R  P  K  I  *  G  K  S  K  I  L  R  F  F  D  N  F  R  R  W  V  *  I  F  F  G  *  I  Y  S  G  I  K  N  G  V  Y  N  *  R  Y  D  *  A  I  A  D  F  N  G  *  N :   C  *  A  T  S  E  N  F  P   : E  C  I  S  G  V  S  N  R  D  T  G  E  V  S  Q  S  *  R  W  Q  C  V  *  S  T  Q  D   : A  C  *  L  F  K  L  E  D  R  Q  *  D  R  S  D  T  C   : K  A  N  C  T  H  *  F  L  *  R  S  E  G  H  S  A  C  G  D  V  W  I  Y  K  R   : G  S  S  R  R  C  C  W  S  R  P  Q  H  I  R  Q  S  I   : D  S  L  L  Y  S  I  T  Y  P  N  E  *  I  P  *  P  Y  N  I   : A  V  C  I  K  E  I  W  A  V  Y  W  D  L  C  *  G  F  G  H  D  W  S  K  A  F  C  A  K  P  N  *  G  I  S  L  F  V  *  H  C  N  Y  T  S  S  T  F  L  P  K  S  Y  C  V  N  P  Y  H  L  F  S  S  Q  H  S  S  W  M  Y  R  F  T  Y  F  A  E  N  L  W  F  C  I  R  R  P  H  *  *  F  L  L  K  F  *  N  D  V  Q  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71791" stop="71671"/>
                    <exon start="71568" stop="71540"/>
                    <exon start="70495" stop="70412"/>
                    <exon start="70311" stop="70258"/>
                    <exon start="70134" stop="70057"/>
                    <exon start="69924" stop="69871"/>
                    <exon start="69741" stop="69682"/>
                    <exon start="69594" stop="69430"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFLIILGGGCESFLGKFIVGSRMVCITEDMIKQLQTSMDEIAEPLQKTFQNVYQGYRTETLVRFLKARDGSVSKAHKMLVDCLNWRIDNEIDQILAKPIVPTDFYRGVRDTQLVGMSGYTREGLPVVAVGVGLSTYDKASIHYYIQSHIQMNEYRDRIILPSASKKFGRYIGTCVKVLDMTGLKLSALNQIKVSRYLFDIVIILHRPSYQNPTV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="68880" e_stop="68337"/>
            <exon e_start="68258" e_stop="68178"/>
            <exon e_start="67681" e_stop="67173"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.908" acc_prob="0.558" e_score="0.991"/>
          <exon-intron don_prob="0.983" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="68880" e_stop="68337" e_length="544"/>
          </exon>
          <intron i_serial="1" don_prob="0.908" acc_prob="0.558">
            <gDNA_intron_boundary i_start="68336" i_stop="68259" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68258" e_stop="68178" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68177" i_stop="67682" i_length="496"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67681" e_stop="67173" e_length="509"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68880" stop="68337"/>
              <exon start="68258" stop="68178"/>
              <exon start="67681" stop="67434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68394" stop="68337"/>
              <exon start="68258" stop="68178"/>
              <exon start="67681" stop="67173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389672" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTAAACTAAAAACATAGCAGAATGGAAGAAAAGATCTATACAGGTGATCCAACTAGTTAAGAAACTTATGTTTTTCAAGAGTCTTTTTGGTCTTGTTAATACTTAGATGTGGATGTGGCATTCACCCGAGGCCTGGTGGCTATAACAAGGTGGTGTCTAGCCCAATTTGTGTGTGCCTCGATAATTCCACCGAATATTTTCTACCTCGCACCAACATAGGCGTTGAATAAATAACTACCGAAGGCTTAGGCAGGAAGAAAAATAGTTATTAGTTTGTTGTAGAAAACAAATCATTTGTTACTGGAATCAAAATGAATGTAGAGTATCATATAGCTGATTCCAATTACTTTGGGATTGAGACATTTGATTGATATTGATTATTGAAATGATTTATTCATTCATCTTTTTTAAACTTGACATTTTGTTTATTCCTCTTGTAGCTCTTAACTGCTATATCTACCATGATGACCCTAAATTATCCCTGAGAAGACAGATACATATTACATTGTTAATGCTCCATACATATTCTCAGCCTGCTGGAAG : GTTGTGAGACCTCTTTTACAAGAAAGAACTAAAAAGAAAGTCCAAGTGCTCTCCGGCTCGGGAAAAGATGAACTGTTGAAG : ATAATGGATTATGCATCGCTACCACACTTTTGTAAAAGAGAAGGCTCGGGTTCATCTAAACATGGTAGAAATGGTACAAATGATAACTGTTTCTCCTTTGATCACGCTTTTCATCAGCAACTCTATGATTATACTAAGCAACAAGCTCTAGCATTAGAGGCTGTAGCACCAAGCAAAGAAGGATCTGTCCATGTGACCTTACCTGAGCCTGATCCAGATGATGCAAAGATTGCTGAAACAATTGAATCCACATTCCATAGAATGGGGGAGAAAAACGGAATTTGTCAATCATTTCATGAAATAAAGATCAATGGCGATTGAAGCTGATTCGCTGTAGTCTTGGTAACTGCTTATTTTGAATCCAGACGAGAGGATTTAAGTAAGCGTTGTTATAGTACTAATATGGCTTGCATCATCTCGATGCAGGATTTAGTTAGAAGCTAAGTTGTAACATGGCATTTACGCTACCTTGGAGTGGACTATCATATGAATAGTCAAAAATGTTTATG</gDNA_template>
            <first_frame> L  K  L  K  T  *  Q  N  G  R  K  D  L  Y  R  *  S  N  *  L  R  N  L  C  F  S  R  V  F  L  V  L  L  I  L  R  C  G  C  G  I  H  P  R  P  G  G  Y  N  K  V  V  S  S  P  I  C  V  C  L  D  N  S  T  E  Y  F  L  P  R  T  N  I  G  V  E  *  I  T  T  E  G  L  G  R  K  K  N  S  Y  *  F  V  V  E  N  K  S  F  V  T  G  I  K  M  N  V  E  Y  H  I  A  D  S  N  Y  F  G  I  E  T  F  D  *  Y  *  L  L  K  *  F  I  H  S  S  F  L  N  L  T  F  C  L  F  L  L  *  L  L  T  A  I  S  T  M  M  T  L  N  Y  P  *  E  D  R  Y  I  L  H  C  *  C  S  I  H  I  L  S  L  L  E   : G  C  E  T  S  F  T  R  K  N  *  K  E  S  P  S  A  L  R  L  G  K  R  *  T  V  E   : D  N  G  L  C  I  A  T  T  L  L  *  K  R  R  L  G  F  I  *  T  W  *  K  W  Y  K  *  *  L  F  L  L  *  S  R  F  S  S  A  T  L  *  L  Y  *  A  T  S  S  S  I  R  G  C  S  T  K  Q  R  R  I  C  P  C  D  L  T  *  A  *  S  R  *  C  K  D  C  *  N  N  *  I  H  I  P  *  N  G  G  E  K  R  N  L  S  I  I  S  *  N  K  D  Q  W  R  L  K  L  I  R  C  S  L  G  N  C  L  F  *  I  Q  T  R  G  F  K  *  A  L  L  *  Y  *  Y  G  L  H  H  L  D  A  G  F  S  *  K  L  S  C  N  M  A  F  T  L  P  W  S  G  L  S  Y  E  *  S  K  M  F  M </first_frame>
            <second_frame>  L  N  *  K  H  S  R  M  E  E  K  I  Y  T  G  D  P  T  S  *  E  T  Y  V  F  Q  E  S  F  W  S  C  *  Y  L  D  V  D  V  A  F  T  R  G  L  V  A  I  T  R  W  C  L  A  Q  F  V  C  A  S  I  I  P  P  N  I  F  Y  L  A  P  T  *  A  L  N  K  *  L  P  K  A  *  A  G  R  K  I  V  I  S  L  L  *  K  T  N  H  L  L  L  E  S  K  *  M  *  S  I  I  *  L  I  P  I  T  L  G  L  R  H  L  I  D  I  D  Y  *  N  D  L  F  I  H  L  F  *  T  *  H  F  V  Y  S  S  C  S  S  *  L  L  Y  L  P  *  *  P  *  I  I  P  E  K  T  D  T  Y  Y  I  V  N  A  P  Y  I  F  S  A  C  W  K  :  V  V  R  P  L  L  Q  E  R  T  K  K  K  V  Q  V  L  S  G  S  G  K  D  E  L  L  K  :  I  M  D  Y  A  S  L  P  H  F  C  K  R  E  G  S  G  S  S  K  H  G  R  N  G  T  N  D  N  C  F  S  F  D  H  A  F  H  Q  Q  L  Y  D  Y  T  K  Q  Q  A  L  A  L  E  A  V  A  P  S  K  E  G  S  V  H  V  T  L  P  E  P  D  P  D  D  A  K  I  A  E  T  I  E  S  T  F  H  R  M  G  E  K  N  G  I  C  Q  S  F  H  E  I  K  I  N  G  D  *  S  *  F  A  V  V  L  V  T  A  Y  F  E  S  R  R  E  D  L  S  K  R  C  Y  S  T  N  M  A  C  I  I  S  M  Q  D  L  V  R  S  *  V  V  T  W  H  L  R  Y  L  G  V  D  Y  H  M  N  S  Q  K  C  L   </second_frame>
            <third_frame>   *  T  K  N  I  A  E  W  K  K  R  S  I  Q  V  I  Q  L  V  K  K  L  M  F  F  K  S  L  F  G  L  V  N  T  *  M  W  M  W  H  S  P  E  A  W  W  L  *  Q  G  G  V  *  P  N  L  C  V  P  R  *  F  H  R  I  F  S  T  S  H  Q  H  R  R  *  I  N  N  Y  R  R  L  R  Q  E  E  K  *  L  L  V  C  C  R  K  Q  I  I  C  Y  W  N  Q  N  E  C  R  V  S  Y  S  *  F  Q  L  L  W  D  *  D  I  *  L  I  L  I  I  E  M  I  Y  S  F  I  F  F  K  L  D  I  L  F  I  P  L  V  A  L  N  C  Y  I  Y  H  D  D  P  K  L  S  L  R  R  Q  I  H  I  T  L  L  M  L  H  T  Y  S  Q  P  A  G  R :   L  *  D  L  F  Y  K  K  E  L  K  R  K  S  K  C  S  P  A  R  E  K  M  N  C  *  R :   *  W  I  M  H  R  Y  H  T  F  V  K  E  K  A  R  V  H  L  N  M  V  E  M  V  Q  M  I  T  V  S  P  L  I  T  L  F  I  S  N  S  M  I  I  L  S  N  K  L  *  H  *  R  L  *  H  Q  A  K  K  D  L  S  M  *  P  Y  L  S  L  I  Q  M  M  Q  R  L  L  K  Q  L  N  P  H  S  I  E  W  G  R  K  T  E  F  V  N  H  F  M  K  *  R  S  M  A  I  E  A  D  S  L  *  S  W  *  L  L  I  L  N  P  D  E  R  I  *  V  S  V  V  I  V  L  I  W  L  A  S  S  R  C  R  I  *  L  E  A  K  L  *  H  G  I  Y  A  T  L  E  W  T  I  I  *  I  V  K  N  V  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68405" stop="68337"/>
                    <exon start="68258" stop="68178"/>
                    <exon start="67681" stop="67361"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIPEKTDTYYIVNAPYIFSACWKVVRPLLQERTKKKVQVLSGSGKDELLKIMDYASLPHFCKREGSGSSKHGRNGTNDNCFSFDHAFHQQLYDYTKQQALALEAVAPSKEGSVHVTLPEPDPDDAKIAETIESTFHRMGEKNGICQSFHEIKINGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="86650" PGL_stop="80433"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86650" e_stop="86534"/>
            <exon e_start="86136" e_stop="85064"/>
            <exon e_start="83009" e_stop="81902"/>
            <exon e_start="80450" e_stop="80433"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.312" acc_prob="0.659" e_score="0.974"/>
          <exon-intron don_prob="0.917" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.996"/>
          <exon-only e_score="0.778"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="86650" e_stop="86534" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.312" acc_prob="0.659">
            <gDNA_intron_boundary i_start="86533" i_stop="86137" i_length="397"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86136" e_stop="85064" e_length="1073"/>
          </exon>
          <intron i_serial="2" don_prob="0.917" acc_prob="0.998">
            <gDNA_intron_boundary i_start="85063" i_stop="83010" i_length="2054"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="83009" e_stop="81902" e_length="1108"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81901" i_stop="80451" i_length="1451"/>
          </intron>
          <exon e_serial="4" e_score="0.778">
            <gDNA_exon_boundary e_start="80450" e_stop="80433" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86650" stop="86534"/>
              <exon start="86136" stop="85772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86570" stop="86534"/>
              <exon start="86136" stop="85364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86561" stop="86534"/>
              <exon start="86136" stop="85434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86555" stop="86534"/>
              <exon start="86136" stop="85459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85807" stop="85142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85806" stop="85381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85806" stop="85540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85684" stop="85064"/>
              <exon start="83009" stop="82883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85681" stop="85064"/>
              <exon start="83009" stop="82955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85678" stop="85134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85606" stop="85064"/>
              <exon start="83009" stop="82731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85504" stop="85064"/>
              <exon start="83009" stop="82831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85504" stop="85064"/>
              <exon start="83009" stop="82832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85504" stop="85064"/>
              <exon start="83009" stop="82834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85504" stop="85064"/>
              <exon start="83009" stop="82836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85504" stop="85064"/>
              <exon start="83009" stop="82876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85429" stop="85064"/>
              <exon start="83009" stop="82687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85192" stop="85064"/>
              <exon start="83009" stop="82346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85191" stop="85064"/>
              <exon start="83009" stop="82678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85145" stop="85064"/>
              <exon start="83009" stop="82341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82859" stop="81902"/>
              <exon start="80450" stop="80433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739461" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTCTTATCTTCTTCTATGTGGTGTTTGAGTGCTCTTTAATGTCTACATTTTAATGTTTTGCTTTGTTTTAGGTTCCTGTTTCCTGGAGGAAAAAAAGGGATTTGGTTGTTTTTGAG : GAACTTTCTATGTTGTTGATGGAGCAGCTTATGTTGGTGTGTTTTTCTAATAAGAAGGGGATTAATGGCTTAAGCTTGGAGTCCGAGTGATGGGTTTGGTAAGCACAGTGTATTGAGGTATCAATATTCATTTCTATGGCCTCGACACCTTCTTCCAAGAGTTTAGCCGAAAAGCTGAACAAGACAACTGGAAATCAGACAACAGAACGGAGTTCTCGCAGGTCTACACCTTCCCAAGTTCCAAAAAATAACAAATTAGAGACCACGATTTCTAAAGAACGAGAAGTTGTATCGAAACAGCTTGTGGTAGAATCAACTGTCACCCAAAAGTCGCAGAGCAGTCAACCTAAGGGATCTTCCAACTCACTTGCTGATAAATTCGATTCAAACTTATATTTGGGCAATTCTAAGAATTCAGCTAGTGGAGTAGGTTCTATGCCTACAGAGACAAAAGGCTCACAAGGGACAGCTGATCAGGAAAGAAAGAATTCTACTAAGGACAGCTCAGCATCAGCCAAAGTTAGTGATGGGGCTAGCAGTATTGCAAAAACAAGTGGAAGTGCCAAAATTAGTGATCGAGCAGATTTTCTTGAGAGTGGTAAGAGCAGCATCTGTAGGGGGAGCACAGGAACTGACGTAAGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTTAACAAACCCCACAAAGCTAATGACTCAAGATGGGAAGCCATTCAAGCTATCCGGACTAAAGATGGGGCATTGGATTTGAGGCACTTCCGGTTGCTGAAGAAGTTGGGAAGTGGTGATATTGGAAGTGTGTATCTGTCTGAGTTGTGTGGAACAAAGTGTTATTTTGCCATGAAAGTTATGGATAAGGCGTCGTTAGCTAGTCGTAAGAAATTGCTTCGTGCACAGACAGAAAGAGAGATTTTGCAGTCCCTGGACCATCCATTTCTCCCAACATTATATAGCCATTTTGAAACAGAAAAGTTCTCATGTCTAGTGATGGAGTTCTGCCCAGGAGGAGACCTGCACACACTCAGACAAAGACAACCAGGGAAGCATTTTTCAGAACAAGCGGTGAA : ATTCTACGTAGCAGAAGTGCTCCTTTCCCTGGAATACCTTCACATGCTTGGCATTGTCTATCGTGATCTCAAGCCAGAAAATGTGCTTGTCAGAGAAGATGGACATATAATGCTCTCTGATTTTGACCTCTCCCTTCGCTGTGCTGTCAGTCCAACACTAGTCAAGTCATCATCTCTTGAAGGTGAGCCACTGCGCAAGAATTCAGCTTATTGTGTGCAGCCAGCATGCATCGAGCCCTCTTGTATTCAGCCATCCTGTGCTGTTACTACTACATGTTTCGGGCCTCGCCTCTTTTCCAGCAAGTCAAAGAAAGAAAAGAAATCTAAAAATGAAATAGGTAACCAAGTTAGCCCATTACCAGAGCTTATTGCTGAGCCTACTGGAGCACGGTCAATGTCATTTGTCGGGACTCACGAGTACTTAGCACCCGAGATAATCAAAGGTGAAGGACACGGCAGTGCAGTAGACTGGTGGACCTTTGGTATCTTTCTATATGAGTTACTGTTTGGCAAAACACCCTTCAAGGGATCAGGAAATCGACAAACTCTTTTCAACGTTGTTGGTCAGCCCTTGCGGTTTCCAGAATCTCCAGTGGTCAGTTTCTCAGCTAGAGATCTTATCCGAGGCTTGCTCGTGAAGGAGCCTCAGCATAGACTGGCATACAAAAGAGGAGCCACAGAAATCAAGCAACATCCTTTCTTTGAAGGTGTAAATTGGGCTTTGATACGCTGCGCGAGCCCTCCTGAGATCCCAAGGCCTGTGGAATTCGAGAGAATTTCAGTTCCACCAGCAGCATCAACCAGTGAGAAAGGTGTAGCTGGAACTGTTCCTTACCAGAAGAATTCAGACAACTATCTTGAGTTTGATTTCTTCTAATCTATTTTTTATATATCTTTTTTTCCGTCGAGGCGATATTGGCTGTTCATCTTCACAAATTGAAACATAGGAAGGCTGTACAACATTTGGAAGATGTTATGTGAAGGTTTGATTAGTTTGATGATCATATTATTGTTTTGAGTTGTAATTCAACAGTTGAAAATTTGTTGCATGCCAAAACACTACAAGTTTGATGCTACCAATCGATAATGTGAATTTGTTAGTTTATTT : ACAAAACATTAAAAAAAA</gDNA_template>
            <first_frame> V  L  I  F  F  Y  V  V  F  E  C  S  L  M  S  T  F  *  C  F  A  L  F  *  V  P  V  S  W  R  K  K  R  D  L  V  V  F  E  :  E  L  S  M  L  L  M  E  Q  L  M  L  V  C  F  S  N  K  K  G  I  N  G  L  S  L  E  S  E  *  W  V  W  *  A  Q  C  I  E  V  S  I  F  I  S  M  A  S  T  P  S  S  K  S  L  A  E  K  L  N  K  T  T  G  N  Q  T  T  E  R  S  S  R  R  S  T  P  S  Q  V  P  K  N  N  K  L  E  T  T  I  S  K  E  R  E  V  V  S  K  Q  L  V  V  E  S  T  V  T  Q  K  S  Q  S  S  Q  P  K  G  S  S  N  S  L  A  D  K  F  D  S  N  L  Y  L  G  N  S  K  N  S  A  S  G  V  G  S  M  P  T  E  T  K  G  S  Q  G  T  A  D  Q  E  R  K  N  S  T  K  D  S  S  A  S  A  K  V  S  D  G  A  S  S  I  A  K  T  S  G  S  A  K  I  S  D  R  A  D  F  L  E  S  G  K  S  S  I  C  R  G  S  T  G  T  D  V  S  E  E  S  T  S  S  S  L  S  S  S  V  N  K  P  H  K  A  N  D  S  R  W  E  A  I  Q  A  I  R  T  K  D  G  A  L  D  L  R  H  F  R  L  L  K  K  L  G  S  G  D  I  G  S  V  Y  L  S  E  L  C  G  T  K  C  Y  F  A  M  K  V  M  D  K  A  S  L  A  S  R  K  K  L  L  R  A  Q  T  E  R  E  I  L  Q  S  L  D  H  P  F  L  P  T  L  Y  S  H  F  E  T  E  K  F  S  C  L  V  M  E  F  C  P  G  G  D  L  H  T  L  R  Q  R  Q  P  G  K  H  F  S  E  Q  A  V  K :   F  Y  V  A  E  V  L  L  S  L  E  Y  L  H  M  L  G  I  V  Y  R  D  L  K  P  E  N  V  L  V  R  E  D  G  H  I  M  L  S  D  F  D  L  S  L  R  C  A  V  S  P  T  L  V  K  S  S  S  L  E  G  E  P  L  R  K  N  S  A  Y  C  V  Q  P  A  C  I  E  P  S  C  I  Q  P  S  C  A  V  T  T  T  C  F  G  P  R  L  F  S  S  K  S  K  K  E  K  K  S  K  N  E  I  G  N  Q  V  S  P  L  P  E  L  I  A  E  P  T  G  A  R  S  M  S  F  V  G  T  H  E  Y  L  A  P  E  I  I  K  G  E  G  H  G  S  A  V  D  W  W  T  F  G  I  F  L  Y  E  L  L  F  G  K  T  P  F  K  G  S  G  N  R  Q  T  L  F  N  V  V  G  Q  P  L  R  F  P  E  S  P  V  V  S  F  S  A  R  D  L  I  R  G  L  L  V  K  E  P  Q  H  R  L  A  Y  K  R  G  A  T  E  I  K  Q  H  P  F  F  E  G  V  N  W  A  L  I  R  C  A  S  P  P  E  I  P  R  P  V  E  F  E  R  I  S  V  P  P  A  A  S  T  S  E  K  G  V  A  G  T  V  P  Y  Q  K  N  S  D  N  Y  L  E  F  D  F  F  *  S  I  F  Y  I  S  F  F  P  S  R  R  Y  W  L  F  I  F  T  N  *  N  I  G  R  L  Y  N  I  W  K  M  L  C  E  G  L  I  S  L  M  I  I  L  L  F  *  V  V  I  Q  Q  L  K  I  C  C  M  P  K  H  Y  K  F  D  A  T  N  R  *  C  E  F  V  S  L  F  :  T  K  H  *  K  K </first_frame>
            <second_frame>  F  L  S  S  S  M  W  C  L  S  A  L  *  C  L  H  F  N  V  L  L  C  F  R  F  L  F  P  G  G  K  K  G  I  W  L  F  L  R :   N  F  L  C  C  *  W  S  S  L  C  W  C  V  F  L  I  R  R  G  L  M  A  *  A  W  S  P  S  D  G  F  G  K  H  S  V  L  R  Y  Q  Y  S  F  L  W  P  R  H  L  L  P  R  V  *  P  K  S  *  T  R  Q  L  E  I  R  Q  Q  N  G  V  L  A  G  L  H  L  P  K  F  Q  K  I  T  N  *  R  P  R  F  L  K  N  E  K  L  Y  R  N  S  L  W  *  N  Q  L  S  P  K  S  R  R  A  V  N  L  R  D  L  P  T  H  L  L  I  N  S  I  Q  T  Y  I  W  A  I  L  R  I  Q  L  V  E  *  V  L  C  L  Q  R  Q  K  A  H  K  G  Q  L  I  R  K  E  R  I  L  L  R  T  A  Q  H  Q  P  K  L  V  M  G  L  A  V  L  Q  K  Q  V  E  V  P  K  L  V  I  E  Q  I  F  L  R  V  V  R  A  A  S  V  G  G  A  Q  E  L  T  *  V  R  R  V  L  L  A  A  *  A  A  A  L  T  N  P  T  K  L  M  T  Q  D  G  K  P  F  K  L  S  G  L  K  M  G  H  W  I  *  G  T  S  G  C  *  R  S  W  E  V  V  I  L  E  V  C  I  C  L  S  C  V  E  Q  S  V  I  L  P  *  K  L  W  I  R  R  R  *  L  V  V  R  N  C  F  V  H  R  Q  K  E  R  F  C  S  P  W  T  I  H  F  S  Q  H  Y  I  A  I  L  K  Q  K  S  S  H  V  *  *  W  S  S  A  Q  E  E  T  C  T  H  S  D  K  D  N  Q  G  S  I  F  Q  N  K  R  *   : N  S  T  *  Q  K  C  S  F  P  W  N  T  F  T  C  L  A  L  S  I  V  I  S  S  Q  K  M  C  L  S  E  K  M  D  I  *  C  S  L  I  L  T  S  P  F  A  V  L  S  V  Q  H  *  S  S  H  H  L  L  K  V  S  H  C  A  R  I  Q  L  I  V  C  S  Q  H  A  S  S  P  L  V  F  S  H  P  V  L  L  L  L  H  V  S  G  L  A  S  F  P  A  S  Q  R  K  K  R  N  L  K  M  K  *  V  T  K  L  A  H  Y  Q  S  L  L  L  S  L  L  E  H  G  Q  C  H  L  S  G  L  T  S  T  *  H  P  R  *  S  K  V  K  D  T  A  V  Q  *  T  G  G  P  L  V  S  F  Y  M  S  Y  C  L  A  K  H  P  S  R  D  Q  E  I  D  K  L  F  S  T  L  L  V  S  P  C  G  F  Q  N  L  Q  W  S  V  S  Q  L  E  I  L  S  E  A  C  S  *  R  S  L  S  I  D  W  H  T  K  E  E  P  Q  K  S  S  N  I  L  S  L  K  V  *  I  G  L  *  Y  A  A  R  A  L  L  R  S  Q  G  L  W  N  S  R  E  F  Q  F  H  Q  Q  H  Q  P  V  R  K  V  *  L  E  L  F  L  T  R  R  I  Q  T  T  I  L  S  L  I  S  S  N  L  F  F  I  Y  L  F  F  R  R  G  D  I  G  C  S  S  S  Q  I  E  T  *  E  G  C  T  T  F  G  R  C  Y  V  K  V  *  L  V  *  *  S  Y  Y  C  F  E  L  *  F  N  S  *  K  F  V  A  C  Q  N  T  T  S  L  M  L  P  I  D  N  V  N  L  L  V  Y  L :   Q  N  I  K  K   </second_frame>
            <third_frame>   S  Y  L  L  L  C  G  V  *  V  L  F  N  V  Y  I  L  M  F  C  F  V  L  G  S  C  F  L  E  E  K  K  G  F  G  C  F  *   : G  T  F  Y  V  V  D  G  A  A  Y  V  G  V  F  F  *  *  E  G  D  *  W  L  K  L  G  V  R  V  M  G  L  V  S  T  V  Y  *  G  I  N  I  H  F  Y  G  L  D  T  F  F  Q  E  F  S  R  K  A  E  Q  D  N  W  K  S  D  N  R  T  E  F  S  Q  V  Y  T  F  P  S  S  K  K  *  Q  I  R  D  H  D  F  *  R  T  R  S  C  I  E  T  A  C  G  R  I  N  C  H  P  K  V  A  E  Q  S  T  *  G  I  F  Q  L  T  C  *  *  I  R  F  K  L  I  F  G  Q  F  *  E  F  S  *  W  S  R  F  Y  A  Y  R  D  K  R  L  T  R  D  S  *  S  G  K  K  E  F  Y  *  G  Q  L  S  I  S  Q  S  *  *  W  G  *  Q  Y  C  K  N  K  W  K  C  Q  N  *  *  S  S  R  F  S  *  E  W  *  E  Q  H  L  *  G  E  H  R  N  *  R  K  *  G  E  Y  F  *  Q  L  E  Q  Q  R  *  Q  T  P  Q  S  *  *  L  K  M  G  S  H  S  S  Y  P  D  *  R  W  G  I  G  F  E  A  L  P  V  A  E  E  V  G  K  W  *  Y  W  K  C  V  S  V  *  V  V  W  N  K  V  L  F  C  H  E  S  Y  G  *  G  V  V  S  *  S  *  E  I  A  S  C  T  D  R  K  R  D  F  A  V  P  G  P  S  I  S  P  N  I  I  *  P  F  *  N  R  K  V  L  M  S  S  D  G  V  L  P  R  R  R  P  A  H  T  Q  T  K  T  T  R  E  A  F  F  R  T  S  G  E  :  I  L  R  S  R  S  A  P  F  P  G  I  P  S  H  A  W  H  C  L  S  *  S  Q  A  R  K  C  A  C  Q  R  R  W  T  Y  N  A  L  *  F  *  P  L  P  S  L  C  C  Q  S  N  T  S  Q  V  I  I  S  *  R  *  A  T  A  Q  E  F  S  L  L  C  A  A  S  M  H  R  A  L  L  Y  S  A  I  L  C  C  Y  Y  Y  M  F  R  A  S  P  L  F  Q  Q  V  K  E  R  K  E  I  *  K  *  N  R  *  P  S  *  P  I  T  R  A  Y  C  *  A  Y  W  S  T  V  N  V  I  C  R  D  S  R  V  L  S  T  R  D  N  Q  R  *  R  T  R  Q  C  S  R  L  V  D  L  W  Y  L  S  I  *  V  T  V  W  Q  N  T  L  Q  G  I  R  K  S  T  N  S  F  Q  R  C  W  S  A  L  A  V  S  R  I  S  S  G  Q  F  L  S  *  R  S  Y  P  R  L  A  R  E  G  A  S  A  *  T  G  I  Q  K  R  S  H  R  N  Q  A  T  S  F  L  *  R  C  K  L  G  F  D  T  L  R  E  P  S  *  D  P  K  A  C  G  I  R  E  N  F  S  S  T  S  S  I  N  Q  *  E  R  C  S  W  N  C  S  L  P  E  E  F  R  Q  L  S  *  V  *  F  L  L  I  Y  F  L  Y  I  F  F  S  V  E  A  I  L  A  V  H  L  H  K  L  K  H  R  K  A  V  Q  H  L  E  D  V  M  *  R  F  D  *  F  D  D  H  I  I  V  L  S  C  N  S  T  V  E  N  L  L  H  A  K  T  L  Q  V  *  C  Y  Q  S  I  M  *  I  C  *  F  I   : Y  K  T  L  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86034" stop="85064"/>
                    <exon start="83009" stop="82133"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1845</number_coding_nucleotides>
                  <number_encoded_amino_acids>615</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AQCIEVSIFISMASTPSSKSLAEKLNKTTGNQTTERSSRRSTPSQVPKNNKLETTISKEREVVSKQLVVESTVTQKSQSSQPKGSSNSLADKFDSNLYLGNSKNSASGVGSMPTETKGSQGTADQERKNSTKDSSASAKVSDGASSIAKTSGSAKISDRADFLESGKSSICRGSTGTDVSEESTSSSLSSSVNKPHKANDSRWEAIQAIRTKDGALDLRHFRLLKKLGSGDIGSVYLSELCGTKCYFAMKVMDKASLASRKKLLRAQTEREILQSLDHPFLPTLYSHFETEKFSCLVMEFCPGGDLHTLRQRQPGKHFSEQAVKFYVAEVLLSLEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKSSSLEGEPLRKNSAYCVQPACIEPSCIQPSCAVTTTCFGPRLFSSKSKKEKKSKNEIGNQVSPLPELIAEPTGARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRQTLFNVVGQPLRFPESPVVSFSARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCASPPEIPRPVEFERISVPPAASTSEKGVAGTVPYQKNSDNYLEFDFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="86143" e_stop="85064"/>
            <exon e_start="83009" e_stop="81902"/>
            <exon e_start="80450" e_stop="80433"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.917" acc_prob="0.998" e_score="0.993"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.996"/>
          <exon-only e_score="0.778"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="86143" e_stop="85064" e_length="1080"/>
          </exon>
          <intron i_serial="1" don_prob="0.917" acc_prob="0.998">
            <gDNA_intron_boundary i_start="85063" i_stop="83010" i_length="2054"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="83009" e_stop="81902" e_length="1108"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81901" i_stop="80451" i_length="1451"/>
          </intron>
          <exon e_serial="3" e_score="0.778">
            <gDNA_exon_boundary e_start="80450" e_stop="80433" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86143" stop="85377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85807" stop="85142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85806" stop="85381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85806" stop="85540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85684" stop="85064"/>
              <exon start="83009" stop="82883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85681" stop="85064"/>
              <exon start="83009" stop="82955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85678" stop="85134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85606" stop="85064"/>
              <exon start="83009" stop="82731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85504" stop="85064"/>
              <exon start="83009" stop="82831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85504" stop="85064"/>
              <exon start="83009" stop="82832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85504" stop="85064"/>
              <exon start="83009" stop="82834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85504" stop="85064"/>
              <exon start="83009" stop="82836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85504" stop="85064"/>
              <exon start="83009" stop="82876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85429" stop="85064"/>
              <exon start="83009" stop="82687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85192" stop="85064"/>
              <exon start="83009" stop="82346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85191" stop="85064"/>
              <exon start="83009" stop="82678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85145" stop="85064"/>
              <exon start="83009" stop="82341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82859" stop="81902"/>
              <exon start="80450" stop="80433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739461" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTAGGAACTTTCTATGTTGTTGATGGAGCAGCTTATGTTGGTGTGTTTTTCTAATAAGAAGGGGATTAATGGCTTAAGCTTGGAGTCCGAGTGATGGGTTTGGTAAGCACAGTGTATTGAGGTATCAATATTCATTTCTATGGCCTCGACACCTTCTTCCAAGAGTTTAGCCGAAAAGCTGAACAAGACAACTGGAAATCAGACAACAGAACGGAGTTCTCGCAGGTCTACACCTTCCCAAGTTCCAAAAAATAACAAATTAGAGACCACGATTTCTAAAGAACGAGAAGTTGTATCGAAACAGCTTGTGGTAGAATCAACTGTCACCCAAAAGTCGCAGAGCAGTCAACCTAAGGGATCTTCCAACTCACTTGCTGATAAATTCGATTCAAACTTATATTTGGGCAATTCTAAGAATTCAGCTAGTGGAGTAGGTTCTATGCCTACAGAGACAAAAGGCTCACAAGGGACAGCTGATCAGGAAAGAAAGAATTCTACTAAGGACAGCTCAGCATCAGCCAAAGTTAGTGATGGGGCTAGCAGTATTGCAAAAACAAGTGGAAGTGCCAAAATTAGTGATCGAGCAGATTTTCTTGAGAGTGGTAAGAGCAGCATCTGTAGGGGGAGCACAGGAACTGACGTAAGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTTAACAAACCCCACAAAGCTAATGACTCAAGATGGGAAGCCATTCAAGCTATCCGGACTAAAGATGGGGCATTGGATTTGAGGCACTTCCGGTTGCTGAAGAAGTTGGGAAGTGGTGATATTGGAAGTGTGTATCTGTCTGAGTTGTGTGGAACAAAGTGTTATTTTGCCATGAAAGTTATGGATAAGGCGTCGTTAGCTAGTCGTAAGAAATTGCTTCGTGCACAGACAGAAAGAGAGATTTTGCAGTCCCTGGACCATCCATTTCTCCCAACATTATATAGCCATTTTGAAACAGAAAAGTTCTCATGTCTAGTGATGGAGTTCTGCCCAGGAGGAGACCTGCACACACTCAGACAAAGACAACCAGGGAAGCATTTTTCAGAACAAGCGGTGAA : ATTCTACGTAGCAGAAGTGCTCCTTTCCCTGGAATACCTTCACATGCTTGGCATTGTCTATCGTGATCTCAAGCCAGAAAATGTGCTTGTCAGAGAAGATGGACATATAATGCTCTCTGATTTTGACCTCTCCCTTCGCTGTGCTGTCAGTCCAACACTAGTCAAGTCATCATCTCTTGAAGGTGAGCCACTGCGCAAGAATTCAGCTTATTGTGTGCAGCCAGCATGCATCGAGCCCTCTTGTATTCAGCCATCCTGTGCTGTTACTACTACATGTTTCGGGCCTCGCCTCTTTTCCAGCAAGTCAAAGAAAGAAAAGAAATCTAAAAATGAAATAGGTAACCAAGTTAGCCCATTACCAGAGCTTATTGCTGAGCCTACTGGAGCACGGTCAATGTCATTTGTCGGGACTCACGAGTACTTAGCACCCGAGATAATCAAAGGTGAAGGACACGGCAGTGCAGTAGACTGGTGGACCTTTGGTATCTTTCTATATGAGTTACTGTTTGGCAAAACACCCTTCAAGGGATCAGGAAATCGACAAACTCTTTTCAACGTTGTTGGTCAGCCCTTGCGGTTTCCAGAATCTCCAGTGGTCAGTTTCTCAGCTAGAGATCTTATCCGAGGCTTGCTCGTGAAGGAGCCTCAGCATAGACTGGCATACAAAAGAGGAGCCACAGAAATCAAGCAACATCCTTTCTTTGAAGGTGTAAATTGGGCTTTGATACGCTGCGCGAGCCCTCCTGAGATCCCAAGGCCTGTGGAATTCGAGAGAATTTCAGTTCCACCAGCAGCATCAACCAGTGAGAAAGGTGTAGCTGGAACTGTTCCTTACCAGAAGAATTCAGACAACTATCTTGAGTTTGATTTCTTCTAATCTATTTTTTATATATCTTTTTTTCCGTCGAGGCGATATTGGCTGTTCATCTTCACAAATTGAAACATAGGAAGGCTGTACAACATTTGGAAGATGTTATGTGAAGGTTTGATTAGTTTGATGATCATATTATTGTTTTGAGTTGTAATTCAACAGTTGAAAATTTGTTGCATGCCAAAACACTACAAGTTTGATGCTACCAATCGATAATGTGAATTTGTTAGTTTATTT : ACAAAACATTAAAAAAAA</gDNA_template>
            <first_frame> N  L  G  T  F  Y  V  V  D  G  A  A  Y  V  G  V  F  F  *  *  E  G  D  *  W  L  K  L  G  V  R  V  M  G  L  V  S  T  V  Y  *  G  I  N  I  H  F  Y  G  L  D  T  F  F  Q  E  F  S  R  K  A  E  Q  D  N  W  K  S  D  N  R  T  E  F  S  Q  V  Y  T  F  P  S  S  K  K  *  Q  I  R  D  H  D  F  *  R  T  R  S  C  I  E  T  A  C  G  R  I  N  C  H  P  K  V  A  E  Q  S  T  *  G  I  F  Q  L  T  C  *  *  I  R  F  K  L  I  F  G  Q  F  *  E  F  S  *  W  S  R  F  Y  A  Y  R  D  K  R  L  T  R  D  S  *  S  G  K  K  E  F  Y  *  G  Q  L  S  I  S  Q  S  *  *  W  G  *  Q  Y  C  K  N  K  W  K  C  Q  N  *  *  S  S  R  F  S  *  E  W  *  E  Q  H  L  *  G  E  H  R  N  *  R  K  *  G  E  Y  F  *  Q  L  E  Q  Q  R  *  Q  T  P  Q  S  *  *  L  K  M  G  S  H  S  S  Y  P  D  *  R  W  G  I  G  F  E  A  L  P  V  A  E  E  V  G  K  W  *  Y  W  K  C  V  S  V  *  V  V  W  N  K  V  L  F  C  H  E  S  Y  G  *  G  V  V  S  *  S  *  E  I  A  S  C  T  D  R  K  R  D  F  A  V  P  G  P  S  I  S  P  N  I  I  *  P  F  *  N  R  K  V  L  M  S  S  D  G  V  L  P  R  R  R  P  A  H  T  Q  T  K  T  T  R  E  A  F  F  R  T  S  G  E  :  I  L  R  S  R  S  A  P  F  P  G  I  P  S  H  A  W  H  C  L  S  *  S  Q  A  R  K  C  A  C  Q  R  R  W  T  Y  N  A  L  *  F  *  P  L  P  S  L  C  C  Q  S  N  T  S  Q  V  I  I  S  *  R  *  A  T  A  Q  E  F  S  L  L  C  A  A  S  M  H  R  A  L  L  Y  S  A  I  L  C  C  Y  Y  Y  M  F  R  A  S  P  L  F  Q  Q  V  K  E  R  K  E  I  *  K  *  N  R  *  P  S  *  P  I  T  R  A  Y  C  *  A  Y  W  S  T  V  N  V  I  C  R  D  S  R  V  L  S  T  R  D  N  Q  R  *  R  T  R  Q  C  S  R  L  V  D  L  W  Y  L  S  I  *  V  T  V  W  Q  N  T  L  Q  G  I  R  K  S  T  N  S  F  Q  R  C  W  S  A  L  A  V  S  R  I  S  S  G  Q  F  L  S  *  R  S  Y  P  R  L  A  R  E  G  A  S  A  *  T  G  I  Q  K  R  S  H  R  N  Q  A  T  S  F  L  *  R  C  K  L  G  F  D  T  L  R  E  P  S  *  D  P  K  A  C  G  I  R  E  N  F  S  S  T  S  S  I  N  Q  *  E  R  C  S  W  N  C  S  L  P  E  E  F  R  Q  L  S  *  V  *  F  L  L  I  Y  F  L  Y  I  F  F  S  V  E  A  I  L  A  V  H  L  H  K  L  K  H  R  K  A  V  Q  H  L  E  D  V  M  *  R  F  D  *  F  D  D  H  I  I  V  L  S  C  N  S  T  V  E  N  L  L  H  A  K  T  L  Q  V  *  C  Y  Q  S  I  M  *  I  C  *  F  I   : Y  K  T  L  K  K  </first_frame>
            <second_frame>  I  *  E  L  S  M  L  L  M  E  Q  L  M  L  V  C  F  S  N  K  K  G  I  N  G  L  S  L  E  S  E  *  W  V  W  *  A  Q  C  I  E  V  S  I  F  I  S  M  A  S  T  P  S  S  K  S  L  A  E  K  L  N  K  T  T  G  N  Q  T  T  E  R  S  S  R  R  S  T  P  S  Q  V  P  K  N  N  K  L  E  T  T  I  S  K  E  R  E  V  V  S  K  Q  L  V  V  E  S  T  V  T  Q  K  S  Q  S  S  Q  P  K  G  S  S  N  S  L  A  D  K  F  D  S  N  L  Y  L  G  N  S  K  N  S  A  S  G  V  G  S  M  P  T  E  T  K  G  S  Q  G  T  A  D  Q  E  R  K  N  S  T  K  D  S  S  A  S  A  K  V  S  D  G  A  S  S  I  A  K  T  S  G  S  A  K  I  S  D  R  A  D  F  L  E  S  G  K  S  S  I  C  R  G  S  T  G  T  D  V  S  E  E  S  T  S  S  S  L  S  S  S  V  N  K  P  H  K  A  N  D  S  R  W  E  A  I  Q  A  I  R  T  K  D  G  A  L  D  L  R  H  F  R  L  L  K  K  L  G  S  G  D  I  G  S  V  Y  L  S  E  L  C  G  T  K  C  Y  F  A  M  K  V  M  D  K  A  S  L  A  S  R  K  K  L  L  R  A  Q  T  E  R  E  I  L  Q  S  L  D  H  P  F  L  P  T  L  Y  S  H  F  E  T  E  K  F  S  C  L  V  M  E  F  C  P  G  G  D  L  H  T  L  R  Q  R  Q  P  G  K  H  F  S  E  Q  A  V  K :   F  Y  V  A  E  V  L  L  S  L  E  Y  L  H  M  L  G  I  V  Y  R  D  L  K  P  E  N  V  L  V  R  E  D  G  H  I  M  L  S  D  F  D  L  S  L  R  C  A  V  S  P  T  L  V  K  S  S  S  L  E  G  E  P  L  R  K  N  S  A  Y  C  V  Q  P  A  C  I  E  P  S  C  I  Q  P  S  C  A  V  T  T  T  C  F  G  P  R  L  F  S  S  K  S  K  K  E  K  K  S  K  N  E  I  G  N  Q  V  S  P  L  P  E  L  I  A  E  P  T  G  A  R  S  M  S  F  V  G  T  H  E  Y  L  A  P  E  I  I  K  G  E  G  H  G  S  A  V  D  W  W  T  F  G  I  F  L  Y  E  L  L  F  G  K  T  P  F  K  G  S  G  N  R  Q  T  L  F  N  V  V  G  Q  P  L  R  F  P  E  S  P  V  V  S  F  S  A  R  D  L  I  R  G  L  L  V  K  E  P  Q  H  R  L  A  Y  K  R  G  A  T  E  I  K  Q  H  P  F  F  E  G  V  N  W  A  L  I  R  C  A  S  P  P  E  I  P  R  P  V  E  F  E  R  I  S  V  P  P  A  A  S  T  S  E  K  G  V  A  G  T  V  P  Y  Q  K  N  S  D  N  Y  L  E  F  D  F  F  *  S  I  F  Y  I  S  F  F  P  S  R  R  Y  W  L  F  I  F  T  N  *  N  I  G  R  L  Y  N  I  W  K  M  L  C  E  G  L  I  S  L  M  I  I  L  L  F  *  V  V  I  Q  Q  L  K  I  C  C  M  P  K  H  Y  K  F  D  A  T  N  R  *  C  E  F  V  S  L  F  :  T  K  H  *  K  K </second_frame>
            <third_frame>   F  R  N  F  L  C  C  *  W  S  S  L  C  W  C  V  F  L  I  R  R  G  L  M  A  *  A  W  S  P  S  D  G  F  G  K  H  S  V  L  R  Y  Q  Y  S  F  L  W  P  R  H  L  L  P  R  V  *  P  K  S  *  T  R  Q  L  E  I  R  Q  Q  N  G  V  L  A  G  L  H  L  P  K  F  Q  K  I  T  N  *  R  P  R  F  L  K  N  E  K  L  Y  R  N  S  L  W  *  N  Q  L  S  P  K  S  R  R  A  V  N  L  R  D  L  P  T  H  L  L  I  N  S  I  Q  T  Y  I  W  A  I  L  R  I  Q  L  V  E  *  V  L  C  L  Q  R  Q  K  A  H  K  G  Q  L  I  R  K  E  R  I  L  L  R  T  A  Q  H  Q  P  K  L  V  M  G  L  A  V  L  Q  K  Q  V  E  V  P  K  L  V  I  E  Q  I  F  L  R  V  V  R  A  A  S  V  G  G  A  Q  E  L  T  *  V  R  R  V  L  L  A  A  *  A  A  A  L  T  N  P  T  K  L  M  T  Q  D  G  K  P  F  K  L  S  G  L  K  M  G  H  W  I  *  G  T  S  G  C  *  R  S  W  E  V  V  I  L  E  V  C  I  C  L  S  C  V  E  Q  S  V  I  L  P  *  K  L  W  I  R  R  R  *  L  V  V  R  N  C  F  V  H  R  Q  K  E  R  F  C  S  P  W  T  I  H  F  S  Q  H  Y  I  A  I  L  K  Q  K  S  S  H  V  *  *  W  S  S  A  Q  E  E  T  C  T  H  S  D  K  D  N  Q  G  S  I  F  Q  N  K  R  *   : N  S  T  *  Q  K  C  S  F  P  W  N  T  F  T  C  L  A  L  S  I  V  I  S  S  Q  K  M  C  L  S  E  K  M  D  I  *  C  S  L  I  L  T  S  P  F  A  V  L  S  V  Q  H  *  S  S  H  H  L  L  K  V  S  H  C  A  R  I  Q  L  I  V  C  S  Q  H  A  S  S  P  L  V  F  S  H  P  V  L  L  L  L  H  V  S  G  L  A  S  F  P  A  S  Q  R  K  K  R  N  L  K  M  K  *  V  T  K  L  A  H  Y  Q  S  L  L  L  S  L  L  E  H  G  Q  C  H  L  S  G  L  T  S  T  *  H  P  R  *  S  K  V  K  D  T  A  V  Q  *  T  G  G  P  L  V  S  F  Y  M  S  Y  C  L  A  K  H  P  S  R  D  Q  E  I  D  K  L  F  S  T  L  L  V  S  P  C  G  F  Q  N  L  Q  W  S  V  S  Q  L  E  I  L  S  E  A  C  S  *  R  S  L  S  I  D  W  H  T  K  E  E  P  Q  K  S  S  N  I  L  S  L  K  V  *  I  G  L  *  Y  A  A  R  A  L  L  R  S  Q  G  L  W  N  S  R  E  F  Q  F  H  Q  Q  H  Q  P  V  R  K  V  *  L  E  L  F  L  T  R  R  I  Q  T  T  I  L  S  L  I  S  S  N  L  F  F  I  Y  L  F  F  R  R  G  D  I  G  C  S  S  S  Q  I  E  T  *  E  G  C  T  T  F  G  R  C  Y  V  K  V  *  L  V  *  *  S  Y  Y  C  F  E  L  *  F  N  S  *  K  F  V  A  C  Q  N  T  T  S  L  M  L  P  I  D  N  V  N  L  L  V  Y  L :   Q  N  I  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86034" stop="85064"/>
                    <exon start="83009" stop="82133"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1845</number_coding_nucleotides>
                  <number_encoded_amino_acids>615</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AQCIEVSIFISMASTPSSKSLAEKLNKTTGNQTTERSSRRSTPSQVPKNNKLETTISKEREVVSKQLVVESTVTQKSQSSQPKGSSNSLADKFDSNLYLGNSKNSASGVGSMPTETKGSQGTADQERKNSTKDSSASAKVSDGASSIAKTSGSAKISDRADFLESGKSSICRGSTGTDVSEESTSSSLSSSVNKPHKANDSRWEAIQAIRTKDGALDLRHFRLLKKLGSGDIGSVYLSELCGTKCYFAMKVMDKASLASRKKLLRAQTEREILQSLDHPFLPTLYSHFETEKFSCLVMEFCPGGDLHTLRQRQPGKHFSEQAVKFYVAEVLLSLEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKSSSLEGEPLRKNSAYCVQPACIEPSCIQPSCAVTTTCFGPRLFSSKSKKEKKSKNEIGNQVSPLPELIAEPTGARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRQTLFNVVGQPLRFPESPVVSFSARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCASPPEIPRPVEFERISVPPAASTSEKGVAGTVPYQKNSDNYLEFDFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="81898" PGL_stop="82675"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81898" e_stop="82675"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="81898" e_stop="82675" e_length="778"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81898" stop="82675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540066" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATAAATAAACTAACAAATTCACATTATCGATTGGTAGCATCAAACTTGTAGTGTTTTGGCATGCAACAAATTTTCAACTGTTGAATTACAACTCAAAACAATAATATGATCATCAAACTAATCAAACCTTCACATAACATCTTCCAAATGTTGTACAGCCTTCCTATGTTTCAATTTGTGAAGATGAACAGCCAATATCGCCTCGACGGAAAAAAAGATATATAAAAAATAGATTAGAAGAAATCAAACTCAAGATAGTTGTCTGAATTCTTCTGGTAAGGAACAGTTCCAGCTACACCTTTCTCACTGGTTGATGCTGCTGGTGGAACTGAAATTCTCTCGAATTCCACAGGCCTTGGGATCTCAGGAGGGCTCGCGCAGCGTATCAAAGCCCAATTTACACCTTCAAAGAAAGGATGTTGCTTGATTTCTGTGGCTCCTCTTTTGTATGCCAGTCTATGCTGAGGCTCCTTCACGAGCAAGCCTCGGATAAGATCTCTAGCTGAGAAACTGACCACTGGAGATTCTGGAAACCGCAAGGGCTGACCAACAACGTTGAAAAGAGTTTGTCGATTTCCTGATCCCTTGAAGGGTGTTTTGCCAAACAGTAACTCATATAGAAAGATACCAAAGGTCCACCAGTCTACTGCACTGCCGTGTCCTTCACCTTTGATTATCTCGGGTGCTAAGTACTCGTGAGTCCCGACAAATGACATTGACCGTGCTCCAGTAGGCTCAGCAATAAGCTCTGGTAATGGGCTAACTTGGTTACCTAT</gDNA_template>
            <first_frame> I  *  I  N  *  Q  I  H  I  I  D  W  *  H  Q  T  C  S  V  L  A  C  N  K  F  S  T  V  E  L  Q  L  K  T  I  I  *  S  S  N  *  S  N  L  H  I  T  S  S  K  C  C  T  A  F  L  C  F  N  L  *  R  *  T  A  N  I  A  S  T  E  K  K  I  Y  K  K  *  I  R  R  N  Q  T  Q  D  S  C  L  N  S  S  G  K  E  Q  F  Q  L  H  L  S  H  W  L  M  L  L  V  E  L  K  F  S  R  I  P  Q  A  L  G  S  Q  E  G  S  R  S  V  S  K  P  N  L  H  L  Q  R  K  D  V  A  *  F  L  W  L  L  F  C  M  P  V  Y  A  E  A  P  S  R  A  S  L  G  *  D  L  *  L  R  N  *  P  L  E  I  L  E  T  A  R  A  D  Q  Q  R  *  K  E  F  V  D  F  L  I  P  *  R  V  F  C  Q  T  V  T  H  I  E  R  Y  Q  R  S  T  S  L  L  H  C  R  V  L  H  L  *  L  S  R  V  L  S  T  R  E  S  R  Q  M  T  L  T  V  L  Q  *  A  Q  Q  *  A  L  V  M  G  *  L  G  Y  L  </first_frame>
            <second_frame>  Y  K  *  T  N  K  F  T  L  S  I  G  S  I  K  L  V  V  F  W  H  A  T  N  F  Q  L  L  N  Y  N  S  K  Q  *  Y  D  H  Q  T  N  Q  T  F  T  *  H  L  P  N  V  V  Q  P  S  Y  V  S  I  C  E  D  E  Q  P  I  S  P  R  R  K  K  R  Y  I  K  N  R  L  E  E  I  K  L  K  I  V  V  *  I  L  L  V  R  N  S  S  S  Y  T  F  L  T  G  *  C  C  W  W  N  *  N  S  L  E  F  H  R  P  W  D  L  R  R  A  R  A  A  Y  Q  S  P  I  Y  T  F  K  E  R  M  L  L  D  F  C  G  S  S  F  V  C  Q  S  M  L  R  L  L  H  E  Q  A  S  D  K  I  S  S  *  E  T  D  H  W  R  F  W  K  P  Q  G  L  T  N  N  V  E  K  S  L  S  I  S  *  S  L  E  G  C  F  A  K  Q  *  L  I  *  K  D  T  K  G  P  P  V  Y  C  T  A  V  S  F  T  F  D  Y  L  G  C  *  V  L  V  S  P  D  K  *  H  *  P  C  S  S  R  L  S  N  K  L  W  *  W  A  N  L  V  T  Y </second_frame>
            <third_frame>   I  N  K  L  T  N  S  H  Y  R  L  V  A  S  N  L  *  C  F  G  M  Q  Q  I  F  N  C  *  I  T  T  Q  N  N  N  M  I  I  K  L  I  K  P  S  H  N  I  F  Q  M  L  Y  S  L  P  M  F  Q  F  V  K  M  N  S  Q  Y  R  L  D  G  K  K  D  I  *  K  I  D  *  K  K  S  N  S  R  *  L  S  E  F  F  W  *  G  T  V  P  A  T  P  F  S  L  V  D  A  A  G  G  T  E  I  L  S  N  S  T  G  L  G  I  S  G  G  L  A  Q  R  I  K  A  Q  F  T  P  S  K  K  G  C  C  L  I  S  V  A  P  L  L  Y  A  S  L  C  *  G  S  F  T  S  K  P  R  I  R  S  L  A  E  K  L  T  T  G  D  S  G  N  R  K  G  *  P  T  T  L  K  R  V  C  R  F  P  D  P  L  K  G  V  L  P  N  S  N  S  Y  R  K  I  P  K  V  H  Q  S  T  A  L  P  C  P  S  P  L  I  I  S  G  A  K  Y  S  *  V  P  T  N  D  I  D  R  A  P  V  G  S  A  I  S  S  G  N  G  L  T  W  L  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82132" stop="82326"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRRNQTQDSCLNSSGKEQFQLHLSHWLMLLVELKFSRIPQALGSQEGSRSVSKPNLHLQRKDVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="91835" PGL_stop="87995"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91835" e_stop="91591"/>
            <exon e_start="90066" e_stop="89947"/>
            <exon e_start="89197" e_stop="88758"/>
            <exon e_start="88023" e_stop="88009"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.869" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.879" e_score="1.000"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91835" e_stop="91591" e_length="245"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="91590" i_stop="90067" i_length="1524"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90066" e_stop="89947" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.869" acc_prob="0.951">
            <gDNA_intron_boundary i_start="89946" i_stop="89198" i_length="749"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89197" e_stop="88758" e_length="440"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.879">
            <gDNA_intron_boundary i_start="88757" i_stop="88024" i_length="734"/>
          </intron>
          <exon e_serial="4" e_score="0.800">
            <gDNA_exon_boundary e_start="88023" e_stop="88009" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91835" stop="91591"/>
              <exon start="90066" stop="89947"/>
              <exon start="89197" stop="88758"/>
              <exon start="88023" stop="88009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91834" stop="91591"/>
              <exon start="90066" stop="89947"/>
              <exon start="89197" stop="88950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91834" stop="91591"/>
              <exon start="90066" stop="89947"/>
              <exon start="89197" stop="88997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91787" stop="91591"/>
              <exon start="90066" stop="89947"/>
              <exon start="89197" stop="89050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336472" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTTGCAGAAATGGGATCTTCTGAAGGTCGAAGAGCAACTTTAATGGTGTACAGAAATTTACTGAAAGCAGTGAAAAAACATATAGGGAAGGAAGAACACAAATCTCATTTTACTGATTTCAGCAGGGAAGAATTCAAGAAGAACATAAATCTGGAATACTCAAAAGACTCTTCTTTTATTCAGCAAAGAATTAATCTTGCTCAAAATTATACTTATCTTCTCAATAGTATCCATCATCATAAG : GACTTGCTATTTTCTTACAACATTGCAGTGGATAGATCAAATGAGATGACAAAAGTGCTGGGCAAATCTGCTGCAAGTGTGGGTCTACGCCTTCCTGATGTTTATCAGCATTAAAAGTTG : CATATGCATCACCGAGTCATATATACACATTTGCTCAATGTACGCGTTGTTTGCATTACTGGTATCATTTCGAAGGTGGTTTTAGATGATTCAACAAAACTGGAAGCTGATATCACAGATATCTCCTAGACCAACTTTCATTCATATCTCCTTAGGATAACAATTTCGCGGATCTGTCCTATGTTGGACAGAATGTTTTTGGTTCGATGAACACCAAACCAGGAAAGTCAATCAGAAAAATGAAGAATTCTCCGCGTTTGTGAAGACTGCCTCAGAAATTGCCAAGCTAGAGATAGTTGTGCCTGATAAGTTTCATTTCATGTGAGAACTCATTAGTCCATTTGAGCCTGTTGTTTCTGTTTGTTACTGTTGTCTCTTTTTTCACTATTCGTTCATTCTACTGACGATCTTTCATAAACAACTTCTCTACCTACTTTATC : GAAAAAAAGGAAAAA</gDNA_template>
            <first_frame> I  L  Q  K  W  D  L  L  K  V  E  E  Q  L  *  W  C  T  E  I  Y  *  K  Q  *  K  N  I  *  G  R  K  N  T  N  L  I  L  L  I  S  A  G  K  N  S  R  R  T  *  I  W  N  T  Q  K  T  L  L  L  F  S  K  E  L  I  L  L  K  I  I  L  I  F  S  I  V  S  I  I  I  R :   T  C  Y  F  L  T  T  L  Q  W  I  D  Q  M  R  *  Q  K  C  W  A  N  L  L  Q  V  W  V  Y  A  F  L  M  F  I  S  I  K  S  C :   I  C  I  T  E  S  Y  I  H  I  C  S  M  Y  A  L  F  A  L  L  V  S  F  R  R  W  F  *  M  I  Q  Q  N  W  K  L  I  S  Q  I  S  P  R  P  T  F  I  H  I  S  L  G  *  Q  F  R  G  S  V  L  C  W  T  E  C  F  W  F  D  E  H  Q  T  R  K  V  N  Q  K  N  E  E  F  S  A  F  V  K  T  A  S  E  I  A  K  L  E  I  V  V  P  D  K  F  H  F  M  *  E  L  I  S  P  F  E  P  V  V  S  V  C  Y  C  C  L  F  F  H  Y  S  F  I  L  L  T  I  F  H  K  Q  L  L  Y  L  L  Y   : R  K  K  G  K  </first_frame>
            <second_frame>  F  C  R  N  G  I  F  *  R  S  K  S  N  F  N  G  V  Q  K  F  T  E  S  S  E  K  T  Y  R  E  G  R  T  Q  I  S  F  Y  *  F  Q  Q  G  R  I  Q  E  E  H  K  S  G  I  L  K  R  L  F  F  Y  S  A  K  N  *  S  C  S  K  L  Y  L  S  S  Q  *  Y  P  S  S  *   : G  L  A  I  F  L  Q  H  C  S  G  *  I  K  *  D  D  K  S  A  G  Q  I  C  C  K  C  G  S  T  P  S  *  C  L  S  A  L  K  V   : A  Y  A  S  P  S  H  I  Y  T  F  A  Q  C  T  R  C  L  H  Y  W  Y  H  F  E  G  G  F  R  *  F  N  K  T  G  S  *  Y  H  R  Y  L  L  D  Q  L  S  F  I  S  P  *  D  N  N  F  A  D  L  S  Y  V  G  Q  N  V  F  G  S  M  N  T  K  P  G  K  S  I  R  K  M  K  N  S  P  R  L  *  R  L  P  Q  K  L  P  S  *  R  *  L  C  L  I  S  F  I  S  C  E  N  S  L  V  H  L  S  L  L  F  L  F  V  T  V  V  S  F  F  T  I  R  S  F  Y  *  R  S  F  I  N  N  F  S  T  Y  F  I  :  E  K  K  E  K </second_frame>
            <third_frame>   F  A  E  M  G  S  S  E  G  R  R  A  T  L  M  V  Y  R  N  L  L  K  A  V  K  K  H  I  G  K  E  E  H  K  S  H  F  T  D  F  S  R  E  E  F  K  K  N  I  N  L  E  Y  S  K  D  S  S  F  I  Q  Q  R  I  N  L  A  Q  N  Y  T  Y  L  L  N  S  I  H  H  H  K  :  D  L  L  F  S  Y  N  I  A  V  D  R  S  N  E  M  T  K  V  L  G  K  S  A  A  S  V  G  L  R  L  P  D  V  Y  Q  H  *  K  L  :  H  M  H  H  R  V  I  Y  T  H  L  L  N  V  R  V  V  C  I  T  G  I  I  S  K  V  V  L  D  D  S  T  K  L  E  A  D  I  T  D  I  S  *  T  N  F  H  S  Y  L  L  R  I  T  I  S  R  I  C  P  M  L  D  R  M  F  L  V  R  *  T  P  N  Q  E  S  Q  S  E  K  *  R  I  L  R  V  C  E  D  C  L  R  N  C  Q  A  R  D  S  C  A  *  *  V  S  F  H  V  R  T  H  *  S  I  *  A  C  C  F  C  L  L  L  L  S  L  F  S  L  F  V  H  S  T  D  D  L  S  *  T  T  S  L  P  T  L  S :   K  K  R  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91833" stop="91591"/>
                    <exon start="90066" stop="89953"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FAEMGSSEGRRATLMVYRNLLKAVKKHIGKEEHKSHFTDFSREEFKKNINLEYSKDSSFIQQRINLAQNYTYLLNSIHHHKDLLFSYNIAVDRSNEMTKVLGKSAASVGLRLPDVYQH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="91834" e_stop="91591"/>
            <exon e_start="90066" e_stop="89947"/>
            <exon e_start="89197" e_stop="88738"/>
            <exon e_start="88023" e_stop="88007"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.869" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.879" e_score="0.994"/>
          <exon-only e_score="0.706"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91834" e_stop="91591" e_length="244"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="91590" i_stop="90067" i_length="1524"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90066" e_stop="89947" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.869" acc_prob="0.951">
            <gDNA_intron_boundary i_start="89946" i_stop="89198" i_length="749"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="89197" e_stop="88738" e_length="460"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.879">
            <gDNA_intron_boundary i_start="88737" i_stop="88024" i_length="714"/>
          </intron>
          <exon e_serial="4" e_score="0.706">
            <gDNA_exon_boundary e_start="88023" e_stop="88007" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91834" stop="91591"/>
              <exon start="90066" stop="89947"/>
              <exon start="89197" stop="88950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91834" stop="91591"/>
              <exon start="90066" stop="89947"/>
              <exon start="89197" stop="88997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91787" stop="91591"/>
              <exon start="90066" stop="89947"/>
              <exon start="89197" stop="89050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89096" stop="88738"/>
              <exon start="88023" stop="88007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223424" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTGCAGAAATGGGATCTTCTGAAGGTCGAAGAGCAACTTTAATGGTGTACAGAAATTTACTGAAAGCAGTGAAAAAACATATAGGGAAGGAAGAACACAAATCTCATTTTACTGATTTCAGCAGGGAAGAATTCAAGAAGAACATAAATCTGGAATACTCAAAAGACTCTTCTTTTATTCAGCAAAGAATTAATCTTGCTCAAAATTATACTTATCTTCTCAATAGTATCCATCATCATAAG : GACTTGCTATTTTCTTACAACATTGCAGTGGATAGATCAAATGAGATGACAAAAGTGCTGGGCAAATCTGCTGCAAGTGTGGGTCTACGCCTTCCTGATGTTTATCAGCATTAAAAGTTG : CATATGCATCACCGAGTCATATATACACATTTGCTCAATGTACGCGTTGTTTGCATTACTGGTATCATTTCGAAGGTGGTTTTAGATGATTCAACAAAACTGGAAGCTGATATCACAGATATCTCCTAGACCAACTTTCATTCATATCTCCTTAGGATAACAATTTCGCGGATCTGTCCTATGTTGGACAGAATGTTTTTGGTTCGATGAACACCAAACCAGGAAAGTCAATCAGAAAAATGAAGAATTCTCCGCGTTTGTGAAGACTGCCTCAGAAATTGCCAAGCTAGAGATAGTTGTGCCTGATAAGTTTCATTTCATGTGAGAACTCATTAGTCCATTTGAGCCTGTTGTTTCTGTTTGTTACTGTTGTCTCTTTTTTCACTATTCGTTCATTCTACTGACGATCTTTCATAAACAACTTCTCTACCTACTTTATCATTCCTGGACTTACACTGAA : GAAAAAAAGGAAAAATT</gDNA_template>
            <first_frame> F  C  R  N  G  I  F  *  R  S  K  S  N  F  N  G  V  Q  K  F  T  E  S  S  E  K  T  Y  R  E  G  R  T  Q  I  S  F  Y  *  F  Q  Q  G  R  I  Q  E  E  H  K  S  G  I  L  K  R  L  F  F  Y  S  A  K  N  *  S  C  S  K  L  Y  L  S  S  Q  *  Y  P  S  S  *   : G  L  A  I  F  L  Q  H  C  S  G  *  I  K  *  D  D  K  S  A  G  Q  I  C  C  K  C  G  S  T  P  S  *  C  L  S  A  L  K  V   : A  Y  A  S  P  S  H  I  Y  T  F  A  Q  C  T  R  C  L  H  Y  W  Y  H  F  E  G  G  F  R  *  F  N  K  T  G  S  *  Y  H  R  Y  L  L  D  Q  L  S  F  I  S  P  *  D  N  N  F  A  D  L  S  Y  V  G  Q  N  V  F  G  S  M  N  T  K  P  G  K  S  I  R  K  M  K  N  S  P  R  L  *  R  L  P  Q  K  L  P  S  *  R  *  L  C  L  I  S  F  I  S  C  E  N  S  L  V  H  L  S  L  L  F  L  F  V  T  V  V  S  F  F  T  I  R  S  F  Y  *  R  S  F  I  N  N  F  S  T  Y  F  I  I  P  G  L  T  L  K :   K  K  R  K  N  </first_frame>
            <second_frame>  F  A  E  M  G  S  S  E  G  R  R  A  T  L  M  V  Y  R  N  L  L  K  A  V  K  K  H  I  G  K  E  E  H  K  S  H  F  T  D  F  S  R  E  E  F  K  K  N  I  N  L  E  Y  S  K  D  S  S  F  I  Q  Q  R  I  N  L  A  Q  N  Y  T  Y  L  L  N  S  I  H  H  H  K  :  D  L  L  F  S  Y  N  I  A  V  D  R  S  N  E  M  T  K  V  L  G  K  S  A  A  S  V  G  L  R  L  P  D  V  Y  Q  H  *  K  L  :  H  M  H  H  R  V  I  Y  T  H  L  L  N  V  R  V  V  C  I  T  G  I  I  S  K  V  V  L  D  D  S  T  K  L  E  A  D  I  T  D  I  S  *  T  N  F  H  S  Y  L  L  R  I  T  I  S  R  I  C  P  M  L  D  R  M  F  L  V  R  *  T  P  N  Q  E  S  Q  S  E  K  *  R  I  L  R  V  C  E  D  C  L  R  N  C  Q  A  R  D  S  C  A  *  *  V  S  F  H  V  R  T  H  *  S  I  *  A  C  C  F  C  L  L  L  L  S  L  F  S  L  F  V  H  S  T  D  D  L  S  *  T  T  S  L  P  T  L  S  F  L  D  L  H  *   : R  K  K  G  K  I </second_frame>
            <third_frame>   L  Q  K  W  D  L  L  K  V  E  E  Q  L  *  W  C  T  E  I  Y  *  K  Q  *  K  N  I  *  G  R  K  N  T  N  L  I  L  L  I  S  A  G  K  N  S  R  R  T  *  I  W  N  T  Q  K  T  L  L  L  F  S  K  E  L  I  L  L  K  I  I  L  I  F  S  I  V  S  I  I  I  R :   T  C  Y  F  L  T  T  L  Q  W  I  D  Q  M  R  *  Q  K  C  W  A  N  L  L  Q  V  W  V  Y  A  F  L  M  F  I  S  I  K  S  C :   I  C  I  T  E  S  Y  I  H  I  C  S  M  Y  A  L  F  A  L  L  V  S  F  R  R  W  F  *  M  I  Q  Q  N  W  K  L  I  S  Q  I  S  P  R  P  T  F  I  H  I  S  L  G  *  Q  F  R  G  S  V  L  C  W  T  E  C  F  W  F  D  E  H  Q  T  R  K  V  N  Q  K  N  E  E  F  S  A  F  V  K  T  A  S  E  I  A  K  L  E  I  V  V  P  D  K  F  H  F  M  *  E  L  I  S  P  F  E  P  V  V  S  V  C  Y  C  C  L  F  F  H  Y  S  F  I  L  L  T  I  F  H  K  Q  L  L  Y  L  L  Y  H  S  W  T  Y  T  E  :  E  K  K  E  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91833" stop="91591"/>
                    <exon start="90066" stop="89953"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FAEMGSSEGRRATLMVYRNLLKAVKKHIGKEEHKSHFTDFSREEFKKNINLEYSKDSSFIQQRINLAQNYTYLLNSIHHHKDLLFSYNIAVDRSNEMTKVLGKSAASVGLRLPDVYQH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="91834" e_stop="91591"/>
            <exon e_start="90066" e_stop="89947"/>
            <exon e_start="89197" e_stop="88739"/>
            <exon e_start="88023" e_stop="87995"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.869" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.879" e_score="0.993"/>
          <exon-only e_score="0.586"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91834" e_stop="91591" e_length="244"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="91590" i_stop="90067" i_length="1524"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90066" e_stop="89947" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.869" acc_prob="0.951">
            <gDNA_intron_boundary i_start="89946" i_stop="89198" i_length="749"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="89197" e_stop="88739" e_length="459"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.879">
            <gDNA_intron_boundary i_start="88738" i_stop="88024" i_length="715"/>
          </intron>
          <exon e_serial="4" e_score="0.586">
            <gDNA_exon_boundary e_start="88023" e_stop="87995" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91834" stop="91591"/>
              <exon start="90066" stop="89947"/>
              <exon start="89197" stop="88950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91834" stop="91591"/>
              <exon start="90066" stop="89947"/>
              <exon start="89197" stop="88997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91787" stop="91591"/>
              <exon start="90066" stop="89947"/>
              <exon start="89197" stop="89050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89197" stop="88739"/>
              <exon start="88023" stop="87995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354187" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTGCAGAAATGGGATCTTCTGAAGGTCGAAGAGCAACTTTAATGGTGTACAGAAATTTACTGAAAGCAGTGAAAAAACATATAGGGAAGGAAGAACACAAATCTCATTTTACTGATTTCAGCAGGGAAGAATTCAAGAAGAACATAAATCTGGAATACTCAAAAGACTCTTCTTTTATTCAGCAAAGAATTAATCTTGCTCAAAATTATACTTATCTTCTCAATAGTATCCATCATCATAAG : GACTTGCTATTTTCTTACAACATTGCAGTGGATAGATCAAATGAGATGACAAAAGTGCTGGGCAAATCTGCTGCAAGTGTGGGTCTACGCCTTCCTGATGTTTATCAGCATTAAAAGTTG : CATATGCATCACCGAGTCATATATACACATTTGCTCAATGTACGCGTTGTTTGCATTACTGGTATCATTTCGAAGGTGGTTTTAGATGATTCAACAAAACTGGAAGCTGATATCACAGATATCTCCTAGACCAACTTTCATTCATATCTCCTTAGGATAACAATTTCGCGGATCTGTCCTATGTTGGACAGAATGTTTTTGGTTCGATGAACACCAAACCAGGAAAGTCAATCAGAAAAATGAAGAATTCTCCGCGTTTGTGAAGACTGCCTCAGAAATTGCCAAGCTAGAGATAGTTGTGCCTGATAAGTTTCATTTCATGTGAGAACTCATTAGTCCATTTGAGCCTGTTGTTTCTGTTTGTTACTGTTGTCTCTTTTTTCACTATTCGTTCATTCTACTGACGATCTTTCATAAACAACTTCTCTACCTACTTTATCATTCCTGGACTTACACTGA : GAAAAAAAGGAAAAATTTGACATTATTCC</gDNA_template>
            <first_frame> F  C  R  N  G  I  F  *  R  S  K  S  N  F  N  G  V  Q  K  F  T  E  S  S  E  K  T  Y  R  E  G  R  T  Q  I  S  F  Y  *  F  Q  Q  G  R  I  Q  E  E  H  K  S  G  I  L  K  R  L  F  F  Y  S  A  K  N  *  S  C  S  K  L  Y  L  S  S  Q  *  Y  P  S  S  *   : G  L  A  I  F  L  Q  H  C  S  G  *  I  K  *  D  D  K  S  A  G  Q  I  C  C  K  C  G  S  T  P  S  *  C  L  S  A  L  K  V   : A  Y  A  S  P  S  H  I  Y  T  F  A  Q  C  T  R  C  L  H  Y  W  Y  H  F  E  G  G  F  R  *  F  N  K  T  G  S  *  Y  H  R  Y  L  L  D  Q  L  S  F  I  S  P  *  D  N  N  F  A  D  L  S  Y  V  G  Q  N  V  F  G  S  M  N  T  K  P  G  K  S  I  R  K  M  K  N  S  P  R  L  *  R  L  P  Q  K  L  P  S  *  R  *  L  C  L  I  S  F  I  S  C  E  N  S  L  V  H  L  S  L  L  F  L  F  V  T  V  V  S  F  F  T  I  R  S  F  Y  *  R  S  F  I  N  N  F  S  T  Y  F  I  I  P  G  L  T  L   : R  K  K  G  K  I  *  H  Y  S </first_frame>
            <second_frame>  F  A  E  M  G  S  S  E  G  R  R  A  T  L  M  V  Y  R  N  L  L  K  A  V  K  K  H  I  G  K  E  E  H  K  S  H  F  T  D  F  S  R  E  E  F  K  K  N  I  N  L  E  Y  S  K  D  S  S  F  I  Q  Q  R  I  N  L  A  Q  N  Y  T  Y  L  L  N  S  I  H  H  H  K  :  D  L  L  F  S  Y  N  I  A  V  D  R  S  N  E  M  T  K  V  L  G  K  S  A  A  S  V  G  L  R  L  P  D  V  Y  Q  H  *  K  L  :  H  M  H  H  R  V  I  Y  T  H  L  L  N  V  R  V  V  C  I  T  G  I  I  S  K  V  V  L  D  D  S  T  K  L  E  A  D  I  T  D  I  S  *  T  N  F  H  S  Y  L  L  R  I  T  I  S  R  I  C  P  M  L  D  R  M  F  L  V  R  *  T  P  N  Q  E  S  Q  S  E  K  *  R  I  L  R  V  C  E  D  C  L  R  N  C  Q  A  R  D  S  C  A  *  *  V  S  F  H  V  R  T  H  *  S  I  *  A  C  C  F  C  L  L  L  L  S  L  F  S  L  F  V  H  S  T  D  D  L  S  *  T  T  S  L  P  T  L  S  F  L  D  L  H  *  :  E  K  K  E  K  F  D  I  I   </second_frame>
            <third_frame>   L  Q  K  W  D  L  L  K  V  E  E  Q  L  *  W  C  T  E  I  Y  *  K  Q  *  K  N  I  *  G  R  K  N  T  N  L  I  L  L  I  S  A  G  K  N  S  R  R  T  *  I  W  N  T  Q  K  T  L  L  L  F  S  K  E  L  I  L  L  K  I  I  L  I  F  S  I  V  S  I  I  I  R :   T  C  Y  F  L  T  T  L  Q  W  I  D  Q  M  R  *  Q  K  C  W  A  N  L  L  Q  V  W  V  Y  A  F  L  M  F  I  S  I  K  S  C :   I  C  I  T  E  S  Y  I  H  I  C  S  M  Y  A  L  F  A  L  L  V  S  F  R  R  W  F  *  M  I  Q  Q  N  W  K  L  I  S  Q  I  S  P  R  P  T  F  I  H  I  S  L  G  *  Q  F  R  G  S  V  L  C  W  T  E  C  F  W  F  D  E  H  Q  T  R  K  V  N  Q  K  N  E  E  F  S  A  F  V  K  T  A  S  E  I  A  K  L  E  I  V  V  P  D  K  F  H  F  M  *  E  L  I  S  P  F  E  P  V  V  S  V  C  Y  C  C  L  F  F  H  Y  S  F  I  L  L  T  I  F  H  K  Q  L  L  Y  L  L  Y  H  S  W  T  Y  T  E :   K  K  R  K  N  L  T  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91833" stop="91591"/>
                    <exon start="90066" stop="89953"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FAEMGSSEGRRATLMVYRNLLKAVKKHIGKEEHKSHFTDFSREEFKKNINLEYSKDSSFIQQRINLAQNYTYLLNSIHHHKDLLFSYNIAVDRSNEMTKVLGKSAASVGLRLPDVYQH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="92470" PGL_stop="93187"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92470" e_stop="93187"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="92470" e_stop="93187" e_length="718"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92470" stop="93187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539178" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTTCATTTGAATCAAGAAACAATATATTGTGCAAGAGATGTTACCAATAGTCTTTACAAGAACAAAATCCATCTTTAAAACAATGAAACCTATTCCTATCGCGCACAACTATCTCTCTCTTGACAATTTCTGAAATTACTTTGAAAGCCTCATGACAATCTTCACAAACACGAAGATTCTTCATTATTCTGATCGTTTCTCCTGGCTTTATGTTCATCAAACCGTAAACAAGAGCCAATTTTTCACTATGTCGATACACATATTTTTCTTTCTCATTTTCTTCTATGTCAAGCAGAACCACTGAAGTATTTGGTACATACCCTTTGGACTTCATTTGTTCCAACAGTTCATCCCATCTCTTAAAGATCTGCTCAGCCTGAGGATGGTTATCATCTCCAGCCACAAATTCGTGCGTTGTTCCTGCTATAGTAATTGAACTCCAACCTGGAGTTTTCTTTACTCCGCGATCCTTCATCAACTTCCTCACCATTGCTGCATCTTCCCAACGCTTAGCTTCTGCATAGATGTTAGACATGATAATGTAGTATCCATCGTTAAGAGGGTCTAGGACACCTAGTTGCCTGATAGCTTCCTCAGCCATTTTTACGTCCTTTTGAGTTCTACATCCACCAAGAAAAGAACCCCATACAACAGCATTTGGTTTTATAGGCATGCTTGTGATGAGCTCATACGCGTCTTCAAGAAGTCCTGCTCGA</gDNA_template>
            <first_frame> C  F  I  *  I  K  K  Q  Y  I  V  Q  E  M  L  P  I  V  F  T  R  T  K  S  I  F  K  T  M  K  P  I  P  I  A  H  N  Y  L  S  L  D  N  F  *  N  Y  F  E  S  L  M  T  I  F  T  N  T  K  I  L  H  Y  S  D  R  F  S  W  L  Y  V  H  Q  T  V  N  K  S  Q  F  F  T  M  S  I  H  I  F  F  F  L  I  F  F  Y  V  K  Q  N  H  *  S  I  W  Y  I  P  F  G  L  H  L  F  Q  Q  F  I  P  S  L  K  D  L  L  S  L  R  M  V  I  I  S  S  H  K  F  V  R  C  S  C  Y  S  N  *  T  P  T  W  S  F  L  Y  S  A  I  L  H  Q  L  P  H  H  C  C  I  F  P  T  L  S  F  C  I  D  V  R  H  D  N  V  V  S  I  V  K  R  V  *  D  T  *  L  P  D  S  F  L  S  H  F  Y  V  L  L  S  S  T  S  T  K  K  R  T  P  Y  N  S  I  W  F  Y  R  H  A  C  D  E  L  I  R  V  F  K  K  S  C  S  </first_frame>
            <second_frame>  A  S  F  E  S  R  N  N  I  L  C  K  R  C  Y  Q  *  S  L  Q  E  Q  N  P  S  L  K  Q  *  N  L  F  L  S  R  T  T  I  S  L  L  T  I  S  E  I  T  L  K  A  S  *  Q  S  S  Q  T  R  R  F  F  I  I  L  I  V  S  P  G  F  M  F  I  K  P  *  T  R  A  N  F  S  L  C  R  Y  T  Y  F  S  F  S  F  S  S  M  S  S  R  T  T  E  V  F  G  T  Y  P  L  D  F  I  C  S  N  S  S  S  H  L  L  K  I  C  S  A  *  G  W  L  S  S  P  A  T  N  S  C  V  V  P  A  I  V  I  E  L  Q  P  G  V  F  F  T  P  R  S  F  I  N  F  L  T  I  A  A  S  S  Q  R  L  A  S  A  *  M  L  D  M  I  M  *  Y  P  S  L  R  G  S  R  T  P  S  C  L  I  A  S  S  A  I  F  T  S  F  *  V  L  H  P  P  R  K  E  P  H  T  T  A  F  G  F  I  G  M  L  V  M  S  S  Y  A  S  S  R  S  P  A  R </second_frame>
            <third_frame>   L  H  L  N  Q  E  T  I  Y  C  A  R  D  V  T  N  S  L  Y  K  N  K  I  H  L  *  N  N  E  T  Y  S  Y  R  A  Q  L  S  L  S  *  Q  F  L  K  L  L  *  K  P  H  D  N  L  H  K  H  E  D  S  S  L  F  *  S  F  L  L  A  L  C  S  S  N  R  K  Q  E  P  I  F  H  Y  V  D  T  H  I  F  L  S  H  F  L  L  C  Q  A  E  P  L  K  Y  L  V  H  T  L  W  T  S  F  V  P  T  V  H  P  I  S  *  R  S  A  Q  P  E  D  G  Y  H  L  Q  P  Q  I  R  A  L  F  L  L  *  *  L  N  S  N  L  E  F  S  L  L  R  D  P  S  S  T  S  S  P  L  L  H  L  P  N  A  *  L  L  H  R  C  *  T  *  *  C  S  I  H  R  *  E  G  L  G  H  L  V  A  *  *  L  P  Q  P  F  L  R  P  F  E  F  Y  I  H  Q  E  K  N  P  I  Q  Q  H  L  V  L  *  A  C  L  *  *  A  H  T  R  L  Q  E  V  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0309B15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="97629" PGL_stop="93083"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97629" e_stop="97505"/>
            <exon e_start="95925" e_stop="95612"/>
            <exon e_start="95056" e_stop="94816"/>
            <exon e_start="94465" e_stop="94448"/>
            <exon e_start="93091" e_stop="93083"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="0.541" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.746" e_score="0.667"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97629" e_stop="97505" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="0.541">
            <gDNA_intron_boundary i_start="97504" i_stop="95926" i_length="1579"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95925" e_stop="95612" e_length="314"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.962">
            <gDNA_intron_boundary i_start="95611" i_stop="95057" i_length="555"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="95056" e_stop="94816" e_length="241"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="94815" i_stop="94466" i_length="350"/>
          </intron>
          <exon e_serial="4" e_score="0.667">
            <gDNA_exon_boundary e_start="94465" e_stop="94448" e_length="18"/>
          </exon>
          <intron i_serial="4" don_prob="0.884" acc_prob="0.746">
            <gDNA_intron_boundary i_start="94447" i_stop="93092" i_length="1356"/>
          </intron>
          <exon e_serial="5" e_score="0.667">
            <gDNA_exon_boundary e_start="93091" e_stop="93083" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97629" stop="97505"/>
              <exon start="95925" stop="95859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97628" stop="97505"/>
              <exon start="95925" stop="95612"/>
              <exon start="95056" stop="94981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97611" stop="97505"/>
              <exon start="95925" stop="95612"/>
              <exon start="95056" stop="94961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97598" stop="97505"/>
              <exon start="95925" stop="95612"/>
              <exon start="95056" stop="95020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97596" stop="97505"/>
              <exon start="95925" stop="95612"/>
              <exon start="95056" stop="94826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95873" stop="95612"/>
              <exon start="95056" stop="94816"/>
              <exon start="94465" stop="94448"/>
              <exon start="93091" stop="93083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283722" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATATTGCAGTATCGGGTCAAAATTGGGCGCTATTTCTCGGGTCTACTGTAATCGTCGCCGGTCAGCTTCCGTCGGTGTTCCGGTCACCTTGTTAGGTGAATTTGAGCTTTCTTTCTCATCAAG : ACATCTATTCCAATTCAAAGACTGGGAATTCTAGTGTATGGCTTCTAGGCGGAATATTAATTACAGTCGTCTCGCTGTGGATGATGATGACGACTATTATGGATATTCTGGCAAGCGAGCTGACCCTAGATTTGATTATTCACCAAAATCGTTAGATAGAATCCCCTGGAAGTCCATTGCCCTTGCTCTTTTTCTGCTCTTTCTGGGATGTTTGCTTCTCTTACTATCCTACTTCATCTTATCTGGTCATATGGAAGGAGAGAGTTCCCAGGCATATGGTCTCCTTGGACTCGGAATCCTCACTTTTCTCCCTG : GTTTCTATGAGACGCGTATTGCATATTACTCTTGGAGAGGTGCTCAAGGTTATCGATTTACTGCAATCCCTGACTATTGAGGTTTTCACATTTCATGTAAACGCTAAATGTAGTTACTAGCTTCTGTAATGAGCTTTATGATAGTTTTTATTGTAACACACATTGCCCTATACATTTCGAATAACATCTGAATGTAGTTACTGGTTTTCATAATGAGTTCGAGTTTGATGAGTTTGCAGCA : CCAAACAACAACAAAAAG : AACTCAAAA</gDNA_template>
            <first_frame> R  Y  C  S  I  G  S  K  L  G  A  I  S  R  V  Y  C  N  R  R  R  S  A  S  V  G  V  P  V  T  L  L  G  E  F  E  L  S  F  S  S  R :   H  L  F  Q  F  K  D  W  E  F  *  C  M  A  S  R  R  N  I  N  Y  S  R  L  A  V  D  D  D  D  D  Y  Y  G  Y  S  G  K  R  A  D  P  R  F  D  Y  S  P  K  S  L  D  R  I  P  W  K  S  I  A  L  A  L  F  L  L  F  L  G  C  L  L  L  L  L  S  Y  F  I  L  S  G  H  M  E  G  E  S  S  Q  A  Y  G  L  L  G  L  G  I  L  T  F  L  P   : G  F  Y  E  T  R  I  A  Y  Y  S  W  R  G  A  Q  G  Y  R  F  T  A  I  P  D  Y  *  G  F  H  I  S  C  K  R  *  M  *  L  L  A  S  V  M  S  F  M  I  V  F  I  V  T  H  I  A  L  Y  I  S  N  N  I  *  M  *  L  L  V  F  I  M  S  S  S  L  M  S  L  Q  H :   Q  T  T  T  K  R :   T  Q   </first_frame>
            <second_frame>  D  I  A  V  S  G  Q  N  W  A  L  F  L  G  S  T  V  I  V  A  G  Q  L  P  S  V  F  R  S  P  C  *  V  N  L  S  F  L  S  H  Q   : D  I  Y  S  N  S  K  T  G  N  S  S  V  W  L  L  G  G  I  L  I  T  V  V  S  L  W  M  M  M  T  T  I  M  D  I  L  A  S  E  L  T  L  D  L  I  I  H  Q  N  R  *  I  E  S  P  G  S  P  L  P  L  L  F  F  C  S  F  W  D  V  C  F  S  Y  Y  P  T  S  S  Y  L  V  I  W  K  E  R  V  P  R  H  M  V  S  L  D  S  E  S  S  L  F  S  L  :  V  S  M  R  R  V  L  H  I  T  L  G  E  V  L  K  V  I  D  L  L  Q  S  L  T  I  E  V  F  T  F  H  V  N  A  K  C  S  Y  *  L  L  *  *  A  L  *  *  F  L  L  *  H  T  L  P  Y  T  F  R  I  T  S  E  C  S  Y  W  F  S  *  *  V  R  V  *  *  V  C  S   : T  K  Q  Q  Q  K   : E  L  K  </second_frame>
            <third_frame>   I  L  Q  Y  R  V  K  I  G  R  Y  F  S  G  L  L  *  S  S  P  V  S  F  R  R  C  S  G  H  L  V  R  *  I  *  A  F  F  L  I  K  :  T  S  I  P  I  Q  R  L  G  I  L  V  Y  G  F  *  A  E  Y  *  L  Q  S  S  R  C  G  *  *  *  R  L  L  W  I  F  W  Q  A  S  *  P  *  I  *  L  F  T  K  I  V  R  *  N  P  L  E  V  H  C  P  C  S  F  S  A  L  S  G  M  F  A  S  L  T  I  L  L  H  L  I  W  S  Y  G  R  R  E  F  P  G  I  W  S  P  W  T  R  N  P  H  F  S  P  W :   F  L  *  D  A  Y  C  I  L  L  L  E  R  C  S  R  L  S  I  Y  C  N  P  *  L  L  R  F  S  H  F  M  *  T  L  N  V  V  T  S  F  C  N  E  L  Y  D  S  F  Y  C  N  T  H  C  P  I  H  F  E  *  H  L  N  V  V  T  G  F  H  N  E  F  E  F  D  E  F  A  A  :  P  N  N  N  K  K  :  N  S  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95891" stop="95612"/>
                    <exon start="95056" stop="94977"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CMASRRNINYSRLAVDDDDDYYGYSGKRADPRFDYSPKSLDRIPWKSIALALFLLFLGCLLLLLSYFILSGHMEGESSQAYGLLGLGILTFLPGFYETRIAYYSWRGAQGYRFTAIPDY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95770" stop="95612"/>
                    <exon start="95056" stop="94937"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IESPGSPLPLLFFCSFWDVCFSYYPTSSYLVIWKERVPRHMVSLDSESSLFSLVSMRRVLHITLGEVLKVIDLLQSLTIEVFTFHVNAKCSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="94307" e_stop="93135"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="94307" e_stop="93135" e_length="1173"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94307" stop="93650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94306" stop="93885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93936" stop="93135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93935" stop="93413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278271" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACCCTTCACCATTTCACTTCTCCATTCGAGCTCAAACAAGCTGTTGCCTTTCTCATCAAAACCAATAAACCTCTTTCACTACTCCCACTTTCTCGGGTAGCTTCCATTTGCGCACTTACTCCCGATTTCCCCTTTGCTCAACAGATTTTCAGCTCTGTTGATCAGCAAGAAGTTGCTATATGGAATAGCTGTTTGAGAAATCTTGCTGAAGGTAGTTCCTTAATTGATGCAATTTTCTTGTTTCAGCAAATGCGTAGTTACAATGTGAGTCTTGACTGTTTCACTTGCTCGTTTGTTCTTAAGGCTTGTGTGGGGTTACGGGATCTTTTACGTGGGAGAATTGTTCATGGGTATATAGAGAAACTTGGGTTTCAATCGAATTTAGTTTTGCTAAATGCACTTCTTCATTTATATGCTACTTGTGGAGCAACGGATGATGCCATCCTTCTGTTCGATAAAATGCCTCAACGAGATGTTGTGTCTTGGAATATAATGATTACCCAATTATCAAAGAAGGGTGATGTTGATGGGGCGTTTGACTTGTTTGGGAAAATGCCTGAGAGAAATTTAAGGTCTTGGACAGCCATGATTACTGGTTTTGTTCATTGCGTGAAGGCTAAAGAGGCTATTAGACTTTTCGTAGAAATGGAAGAAACGGGGTTGAGGGCGAATGAGGTAACTGTAGTGGCTGTTCTTGCAGCTTGTGCTGATTTGGGTGCACTTGACTTGGGTAGGAGGATTCATGAGTATTCAAATAAGAGCGGGTTCAGGAGAAACGTTCACATTTGTAACACTCTGATTGACATGTACATTAAGTGTGGCTGCTTAGAGGCTGCAAAAGCTGTTTTCGATGAAATGAAGGAACCAACAATTGTATCATGGTCAGCCATGATCCAGGGTTTAGCTATCCATGGACACGGGGATGAAGCCTTAGAACTCTTTAACGAGATGATCAAAATGGGAATGAAGCCTAACGAGGTCACGTTTCTTGGAATCTTGCATGCTTGTAGCCATATGGGGTTGATCAATAAGGGGCGAGAATTCTTTACTAGCATGAGTAGAGACTACAACATTTCTCCTCAAATCGAGCATTATGGTTGTATGGTTGATCTCTTGAGTCGAGCAGGACTTCTTGAAGACGCGTATGAGCTCATCACAAGCATGCCTATAA</gDNA_template>
            <first_frame> L  P  F  T  I  S  L  L  H  S  S  S  N  K  L  L  P  F  S  S  K  P  I  N  L  F  H  Y  S  H  F  L  G  *  L  P  F  A  H  L  L  P  I  S  P  L  L  N  R  F  S  A  L  L  I  S  K  K  L  L  Y  G  I  A  V  *  E  I  L  L  K  V  V  P  *  L  M  Q  F  S  C  F  S  K  C  V  V  T  M  *  V  L  T  V  S  L  A  R  L  F  L  R  L  V  W  G  Y  G  I  F  Y  V  G  E  L  F  M  G  I  *  R  N  L  G  F  N  R  I  *  F  C  *  M  H  F  F  I  Y  M  L  L  V  E  Q  R  M  M  P  S  F  C  S  I  K  C  L  N  E  M  L  C  L  G  I  *  *  L  P  N  Y  Q  R  R  V  M  L  M  G  R  L  T  C  L  G  K  C  L  R  E  I  *  G  L  G  Q  P  *  L  L  V  L  F  I  A  *  R  L  K  R  L  L  D  F  S  *  K  W  K  K  R  G  *  G  R  M  R  *  L  *  W  L  F  L  Q  L  V  L  I  W  V  H  L  T  W  V  G  G  F  M  S  I  Q  I  R  A  G  S  G  E  T  F  T  F  V  T  L  *  L  T  C  T  L  S  V  A  A  *  R  L  Q  K  L  F  S  M  K  *  R  N  Q  Q  L  Y  H  G  Q  P  *  S  R  V  *  L  S  M  D  T  G  M  K  P  *  N  S  L  T  R  *  S  K  W  E  *  S  L  T  R  S  R  F  L  E  S  C  M  L  V  A  I  W  G  *  S  I  R  G  E  N  S  L  L  A  *  V  E  T  T  T  F  L  L  K  S  S  I  M  V  V  W  L  I  S  *  V  E  Q  D  F  L  K  T  R  M  S  S  S  Q  A  C  L  * </first_frame>
            <second_frame>  Y  P  S  P  F  H  F  S  I  R  A  Q  T  S  C  C  L  S  H  Q  N  Q  *  T  S  F  T  T  P  T  F  S  G  S  F  H  L  R  T  Y  S  R  F  P  L  C  S  T  D  F  Q  L  C  *  S  A  R  S  C  Y  M  E  *  L  F  E  K  S  C  *  R  *  F  L  N  *  C  N  F  L  V  S  A  N  A  *  L  Q  C  E  S  *  L  F  H  L  L  V  C  S  *  G  L  C  G  V  T  G  S  F  T  W  E  N  C  S  W  V  Y  R  E  T  W  V  S  I  E  F  S  F  A  K  C  T  S  S  F  I  C  Y  L  W  S  N  G  *  C  H  P  S  V  R  *  N  A  S  T  R  C  C  V  L  E  Y  N  D  Y  P  I  I  K  E  G  *  C  *  W  G  V  *  L  V  W  E  N  A  *  E  K  F  K  V  L  D  S  H  D  Y  W  F  C  S  L  R  E  G  *  R  G  Y  *  T  F  R  R  N  G  R  N  G  V  E  G  E  *  G  N  C  S  G  C  S  C  S  L  C  *  F  G  C  T  *  L  G  *  E  D  S  *  V  F  K  *  E  R  V  Q  E  K  R  S  H  L  *  H  S  D  *  H  V  H  *  V  W  L  L  R  G  C  K  S  C  F  R  *  N  E  G  T  N  N  C  I  M  V  S  H  D  P  G  F  S  Y  P  W  T  R  G  *  S  L  R  T  L  *  R  D  D  Q  N  G  N  E  A  *  R  G  H  V  S  W  N  L  A  C  L  *  P  Y  G  V  D  Q  *  G  A  R  I  L  Y  *  H  E  *  R  L  Q  H  F  S  S  N  R  A  L  W  L  Y  G  *  S  L  E  S  S  R  T  S  *  R  R  V  *  A  H  H  K  H  A  Y   </second_frame>
            <third_frame>   T  L  H  H  F  T  S  P  F  E  L  K  Q  A  V  A  F  L  I  K  T  N  K  P  L  S  L  L  P  L  S  R  V  A  S  I  C  A  L  T  P  D  F  P  F  A  Q  Q  I  F  S  S  V  D  Q  Q  E  V  A  I  W  N  S  C  L  R  N  L  A  E  G  S  S  L  I  D  A  I  F  L  F  Q  Q  M  R  S  Y  N  V  S  L  D  C  F  T  C  S  F  V  L  K  A  C  V  G  L  R  D  L  L  R  G  R  I  V  H  G  Y  I  E  K  L  G  F  Q  S  N  L  V  L  L  N  A  L  L  H  L  Y  A  T  C  G  A  T  D  D  A  I  L  L  F  D  K  M  P  Q  R  D  V  V  S  W  N  I  M  I  T  Q  L  S  K  K  G  D  V  D  G  A  F  D  L  F  G  K  M  P  E  R  N  L  R  S  W  T  A  M  I  T  G  F  V  H  C  V  K  A  K  E  A  I  R  L  F  V  E  M  E  E  T  G  L  R  A  N  E  V  T  V  V  A  V  L  A  A  C  A  D  L  G  A  L  D  L  G  R  R  I  H  E  Y  S  N  K  S  G  F  R  R  N  V  H  I  C  N  T  L  I  D  M  Y  I  K  C  G  C  L  E  A  A  K  A  V  F  D  E  M  K  E  P  T  I  V  S  W  S  A  M  I  Q  G  L  A  I  H  G  H  G  D  E  A  L  E  L  F  N  E  M  I  K  M  G  M  K  P  N  E  V  T  F  L  G  I  L  H  A  C  S  H  M  G  L  I  N  K  G  R  E  F  F  T  S  M  S  R  D  Y  N  I  S  P  Q  I  E  H  Y  G  C  M  V  D  L  L  S  R  A  G  L  L  E  D  A  Y  E  L  I  T  S  M  P  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94305" stop="93136"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1170</number_coding_nucleotides>
                  <number_encoded_amino_acids>390</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLHHFTSPFELKQAVAFLIKTNKPLSLLPLSRVASICALTPDFPFAQQIFSSVDQQEVAIWNSCLRNLAEGSSLIDAIFLFQQMRSYNVSLDCFTCSFVLKACVGLRDLLRGRIVHGYIEKLGFQSNLVLLNALLHLYATCGATDDAILLFDKMPQRDVVSWNIMITQLSKKGDVDGAFDLFGKMPERNLRSWTAMITGFVHCVKAKEAIRLFVEMEETGLRANEVTVVAVLAACADLGALDLGRRIHEYSNKSGFRRNVHICNTLIDMYIKCGCLEAAKAVFDEMKEPTIVSWSAMIQGLAIHGHGDEALELFNEMIKMGMKPNEVTFLGILHACSHMGLINKGREFFTSMSRDYNISPQIEHYGCMVDLLSRAGLLEDAYELITSMPI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="108265" PGL_stop="107101"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108265" e_stop="108211"/>
            <exon e_start="107983" e_stop="107760"/>
            <exon e_start="107657" e_stop="107511"/>
            <exon e_start="107272" e_stop="107101"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.686" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.904" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108265" e_stop="108211" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.686">
            <gDNA_intron_boundary i_start="108210" i_stop="107984" i_length="227"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107983" e_stop="107760" e_length="224"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.994">
            <gDNA_intron_boundary i_start="107759" i_stop="107658" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107657" e_stop="107511" e_length="147"/>
          </exon>
          <intron i_serial="3" don_prob="0.951" acc_prob="0.904">
            <gDNA_intron_boundary i_start="107510" i_stop="107273" i_length="238"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="107272" e_stop="107101" e_length="172"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108265" stop="108211"/>
              <exon start="107983" stop="107760"/>
              <exon start="107657" stop="107511"/>
              <exon start="107272" stop="107101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274540" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTGAGTATGGACAAGGACAACAATCAACTTCACCATGTGAGCATTTGCCTCAG : ACGAACTGCAAGACGGAAACTTTACGAGATCAAAAGGAAATGCTTGTGGAGAATTCAGTCTCAAGCTCTGTTCAATTACAAGAACTGCAAGAAAAACTTGATTTATTGAAAGCAGCAGTTGAAATGGCTTCTGATCACAAACATCCCAGTGACTTTTATGTGAATCAGCTAAACGATCAGGTGGAAGTGAAAAGGGGCAAAATTGTTGAAATGGAAAGTCACTG : CATTGATAGAAGCAAGGCCCTTGAGCAAAAGAAGGTTTCTCTTGAGGAAAAGTTAAGAGCAACAAATCCAGAGACCTATGAAAAATATAAAAAGGTGGAAGAGATTGAGTTGAAGTTGGAGAATATATTAGCCGAAAACAAAAGAAG : AGAGGAAGAACTCATTGTACTCTCAGCCAAGGCTGAGAAGCAGCCCAAATTACAACCTAGAAGAACCTACATTCAGCGTGTTGAAGAGATCACCAAAAACAGCCGGAAGCAGGATGTGGACATAGAAAGAATATTAAAAGAAACAAGGGAGCTTCAGTTAGAGAGCAACTTT</gDNA_template>
            <first_frame> F  *  V  W  T  R  T  T  I  N  F  T  M  *  A  F  A  S   : D  E  L  Q  D  G  N  F  T  R  S  K  G  N  A  C  G  E  F  S  L  K  L  C  S  I  T  R  T  A  R  K  T  *  F  I  E  S  S  S  *  N  G  F  *  S  Q  T  S  Q  *  L  L  C  E  S  A  K  R  S  G  G  S  E  K  G  Q  N  C  *  N  G  K  S  L  :  H  *  *  K  Q  G  P  *  A  K  E  G  F  S  *  G  K  V  K  S  N  K  S  R  D  L  *  K  I  *  K  G  G  R  D  *  V  E  V  G  E  Y  I  S  R  K  Q  K  K  :  R  G  R  T  H  C  T  L  S  Q  G  *  E  A  A  Q  I  T  T  *  K  N  L  H  S  A  C  *  R  D  H  Q  K  Q  P  E  A  G  C  G  H  R  K  N  I  K  R  N  K  G  A  S  V  R  E  Q  L  </first_frame>
            <second_frame>  F  E  Y  G  Q  G  Q  Q  S  T  S  P  C  E  H  L  P  Q  :  T  N  C  K  T  E  T  L  R  D  Q  K  E  M  L  V  E  N  S  V  S  S  S  V  Q  L  Q  E  L  Q  E  K  L  D  L  L  K  A  A  V  E  M  A  S  D  H  K  H  P  S  D  F  Y  V  N  Q  L  N  D  Q  V  E  V  K  R  G  K  I  V  E  M  E  S  H  C :   I  D  R  S  K  A  L  E  Q  K  K  V  S  L  E  E  K  L  R  A  T  N  P  E  T  Y  E  K  Y  K  K  V  E  E  I  E  L  K  L  E  N  I  L  A  E  N  K  R  R :   E  E  E  L  I  V  L  S  A  K  A  E  K  Q  P  K  L  Q  P  R  R  T  Y  I  Q  R  V  E  E  I  T  K  N  S  R  K  Q  D  V  D  I  E  R  I  L  K  E  T  R  E  L  Q  L  E  S  N  F </second_frame>
            <third_frame>   L  S  M  D  K  D  N  N  Q  L  H  H  V  S  I  C  L  R :   R  T  A  R  R  K  L  Y  E  I  K  R  K  C  L  W  R  I  Q  S  Q  A  L  F  N  Y  K  N  C  K  K  N  L  I  Y  *  K  Q  Q  L  K  W  L  L  I  T  N  I  P  V  T  F  M  *  I  S  *  T  I  R  W  K  *  K  G  A  K  L  L  K  W  K  V  T   : A  L  I  E  A  R  P  L  S  K  R  R  F  L  L  R  K  S  *  E  Q  Q  I  Q  R  P  M  K  N  I  K  R  W  K  R  L  S  *  S  W  R  I  Y  *  P  K  T  K  E   : E  R  K  N  S  L  Y  S  Q  P  R  L  R  S  S  P  N  Y  N  L  E  E  P  T  F  S  V  L  K  R  S  P  K  T  A  G  S  R  M  W  T  *  K  E  Y  *  K  K  Q  G  S  F  S  *  R  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108264" stop="108211"/>
                    <exon start="107983" stop="107760"/>
                    <exon start="107657" stop="107511"/>
                    <exon start="107272" stop="107101"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FEYGQGQQSTSPCEHLPQTNCKTETLRDQKEMLVENSVSSSVQLQELQEKLDLLKAAVEMASDHKHPSDFYVNQLNDQVEVKRGKIVEMESHCIDRSKALEQKKVSLEEKLRATNPETYEKYKKVEEIELKLENILAENKRREEELIVLSAKAEKQPKLQPRRTYIQRVEEITKNSRKQDVDIERILKETRELQLESNF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 159 chains have been computed
$ 
$ memory statistics:
$ 1030168 bytes spliced alignments in total
$ 109 spliced alignments have been stored
$ 9451 bytes was the average size of a spliced alignment
$ 29640 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1646 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 187 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-06 15:44:06
-->
