<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-11-08 18:01:01"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLe0007L14-GJKH6/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/6Nrwd6xqVG" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/6Nrwd6xqVG" ref_id="SGN-U335079" ref_strand="+" ref_description="SGN-U335079        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0007L14-GJKH6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0007L14.1" temp_strand="+" temp_description="C07SLe0007L14.1  AC232646.1 htgs_phase:1 submitted_to_sgn_as:gi|205831296|gb|AC232646.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0007L14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="47760" stop="48731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48060" g_stop="48396" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0007L14.1" gen_strand="+" ref_id="SGN-U335079" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0007L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48060" e_stop="48396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTACATCATTAACAATTACCATAAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGCACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCTCTAAATCTACGTGTC-GGTTCGTGACACCCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/6Nrwd6xqVG" ref_id="SGN-U339540" ref_strand="+" ref_description="SGN-U339540        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-58, score=228)">
      <seq>agattcgatggagaaagtgaagtctattcaagaaaagcttctagcggcgcaaagtagacaaaaagaatatgcagatcgaaaggttagagacttagagttcatggagggcgaacaagtcttgttgaaagtctcgccaatgaaaggggtgatgcggtttcgtaaaagaggtaagttaagtccaaggtatattggaccatttgaggtactaaagcgagtaggggaggtggcttatgaattagccttacctccagggctgtccggagtacatccggtatttcatgtatccatgttgaaaagataccatggagatggaaactacatcatccgttgggattcagtttcgcttggtgagaattggacttatgaggaggaaccagttgctattttagatagagaggttcgcaagttgaggtcgagagaaattgcatccatcaaagttcaatggaagaatcgaccggttgaagaagctacttgggagaaggaggcagatatgcaagaaaaatacccacatctgtttacagattcaggtactccttttcgccattgtttttcttcatttgatcgttcggggacgaacgatgggtaaattggtatctattgtaacgacctgtttagtcgttttgagcagcagattttaattctggaaaaactggccaagaccacgggcactgcgacggaccgtcacaggcacgacggcccgtcgaaggtgcatcgtttcagcatacttagaatttctgaatttggatatgaaaatcgactctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0007L14-GJKH6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0007L14.1" temp_strand="-" temp_description="C07SLe0007L14.1  AC232646.1 htgs_phase:1 submitted_to_sgn_as:gi|205831296|gb|AC232646.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0007L14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="50468" stop="49106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50168" g_stop="49406" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0007L14.1" gen_strand="-" ref_id="SGN-U339540" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0007L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50168" e_stop="49406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCGATAGAGAAAGTGAAGTCTATTCAAGAAAAGCTTCTAGCGGCGCAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAGGGTGAACAAGTCTTGTTGAAAGTTTCACCAATGAAAGGGGTGATGCGGTTTGGTAAAAGGGGTAAACTAAGTCCAAGGTACATTGGACCATTTGAAGTACTTAAGCGAGTAGGAGAGGTGGCTTATGAGTTAGCCTTGCCTCCAGGGCTGTCCGGAGTACATCCGGTATTCCATGTGTCGATGTTAAAAAGATACCATGGGGATGGAAACTACATTATCCGTTGGGATTCAGTTTTGCTTGATGAGAACTTGTCTTATGAGGAGGAGCCTGTTGCTATTTTAGATAGAGAAGTTCGCAAGTTGAGGTCAAGAGAGATTGCATCCATCAAGGTGCGATGGAAGAATCGACCCGTTTAAGAAGCCACTTGGGAGAAGGAGGCGGATATGCGAGAAAAATACCCACATCTGTTTACAGATTCAGGTACTCCTTTTTGCCCTTGTTTTCCTTCTTTTGATCGTTTGGGGACGAACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTGAGCAGCAGATTTT-ATTCTGGAAAAATAGGCTGAGGCGATGGACCCAACGACGGACCGTCATGGGCACGACGGACCGTCGTAGG-GTCTCGTTTCAAAACACTTAGAAAAACTGAAAATTGGGTACTGAAAATCGACTCTCT</genome_strand>
        <mrna_strand>AGATTCGATGGAGAAAGTGAAGTCTATTCAAGAAAAGCTTCTAGCGGCGCAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAGGGCGAACAAGTCTTGTTGAAAGTCTCGCCAATGAAAGGGGTGATGCGGTTTCGTAAAAGAGGTAAGTTAAGTCCAAGGTATATTGGACCATTTGAGGTACTAAAGCGAGTAGGGGAGGTGGCTTATGAATTAGCCTTACCTCCAGGGCTGTCCGGAGTACATCCGGTATTTCATGTATCCATGTTGAAAAGATACCATGGAGATGGAAACTACATCATCCGTTGGGATTCAGTTTCGCTTGGTGAGAATTGGACTTATGAGGAGGAACCAGTTGCTATTTTAGATAGAGAGGTTCGCAAGTTGAGGTCGAGAGAAATTGCATCCATCAAAGTTCAATGGAAGAATCGACCGGTTGAAGAAGCTACTTGGGAGAAGGAGGCAGATATGCAAGAAAAATACCCACATCTGTTTACAGATTCAGGTACTCCTTTTCGCCATTGTTTTTCTTCATTTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTGAGCAGCAGATTTTAATTCTGGAAAAACTGGCCAAGACCACGGGCACTGCGACGGACCGTCACAGGCACGACGGCCCGTCGAAGGTGCATCGTTTCAGCATACTTAGAATTTCTG-AATTTGGATA-TGAAAATCGACTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/6Nrwd6xqVG" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0007L14-GJKH6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0007L14.1" temp_strand="+" temp_description="C07SLe0007L14.1  AC232646.1 htgs_phase:1 submitted_to_sgn_as:gi|205831296|gb|AC232646.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0007L14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="49929" stop="50706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50229" g_stop="50405" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0007L14.1" gen_strand="+" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0007L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50229" e_stop="50405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCTTCCAACACTTGAATCGTTCTCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/6Nrwd6xqVG" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0007L14-GJKH6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0007L14.1" temp_strand="+" temp_description="C07SLe0007L14.1  AC232646.1 htgs_phase:1 submitted_to_sgn_as:gi|205831296|gb|AC232646.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0007L14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="51406" stop="52718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51706" g_stop="52418" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0007L14.1" gen_strand="+" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0007L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51706" e_stop="52418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACGAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGATACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGTCCCAAGAAGGACATTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAAATTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCCTTCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATACCATTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCATAATGCCCATACCTCGTTCAAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTG-CTCACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/6Nrwd6xqVG" ref_id="SGN-U335935" ref_strand="+" ref_description="SGN-U335935        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-78, score=295)">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0007L14-GJKH6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0007L14.1" temp_strand="+" temp_description="C07SLe0007L14.1  AC232646.1 htgs_phase:1 submitted_to_sgn_as:gi|205831296|gb|AC232646.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0007L14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="51926" stop="53100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52226" g_stop="52884" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0007L14.1" gen_strand="+" ref_id="SGN-U335935" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0007L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52226" e_stop="52884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATTTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCGCGGACTACCAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTTATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCGACAATTCCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGT-TACAAGACAAGACCTACACACCATTTTAACTATCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAAC-AGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/6Nrwd6xqVG" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0007L14-GJKH6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0007L14.1" temp_strand="-" temp_description="C07SLe0007L14.1  AC232646.1 htgs_phase:1 submitted_to_sgn_as:gi|205831296|gb|AC232646.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0007L14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="54022" stop="52014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53722" g_stop="53550" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53549" i_stop="52806" i_length="744">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.229" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52805" g_stop="52278" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0007L14.1" gen_strand="-" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0007L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53722" e_stop="53550"/>
          <exon e_start="52805" e_stop="52278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCTAACTGTGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTCGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACTACGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTGCTTACACTAGAGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGACCACCTCAGACCGGTCAACACTTCTCCGAGAGACCTATGCTTGACTCCAGAGAGTGTTACGGATGTGGGGAGACTGGACATATTAGGAGAAATTGTCCAAAACAGAGTTACAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTTTTCTGGAGGGCGTGGTGGTCGAGGAAATGGTGGTCACCAAAACGGACGAGGTGACGGGCATACTGGAGCCACTACATCACAACATGGTAGGGGCAACGGACAGACGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGTTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTATTTGATCCCGGATCCACATTTTCTTATGTATCTTCCGCATTTGCTAATGGTCTTAACTTACATTGTGAATTGCTTGACATACCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTAAAATGGTGTGTAGGTCTTGTCTTGTAACTTTTGTGGGGAGCAATACTTATGTAGACTTGGTTATCTTAGGAATTGTCGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGAGTCGGTTTTGGTAGTCCGCGAGTTTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAAATAGGGATATTGACTTCTGTATCGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTAAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/6Nrwd6xqVG" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0007L14-GJKH6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0007L14.1" temp_strand="+" temp_description="C07SLe0007L14.1  AC232646.1 htgs_phase:1 submitted_to_sgn_as:gi|205831296|gb|AC232646.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0007L14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="51995" stop="53352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52295" g_stop="53052" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0007L14.1" gen_strand="+" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0007L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52295" e_stop="53052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATTTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCGCGGACTACCAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTTATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCGACAATTCCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTTACAAGACAAGACCTACACACCATTTTAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGCAATTCACAATGTAAGTTAAGACCATTAGCAAATGCGGAAGATACATAAGAAAATGTGGAT-CCGGGATCAAATAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATC</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/6Nrwd6xqVG" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0007L14-GJKH6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0007L14.1" temp_strand="+" temp_description="C07SLe0007L14.1  AC232646.1 htgs_phase:1 submitted_to_sgn_as:gi|205831296|gb|AC232646.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0007L14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="52398" stop="53328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52698" g_stop="53028" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0007L14.1" gen_strand="+" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0007L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52698" e_stop="53028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCGACAATTCCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTTACAAGACAAGACCTACACACCATTTTAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGCAATTCACAATGTAAGTTAAGACCATTAGCAAATGCGGAAGATACATAAGAAAATGTGGATCCGGGATCAAATAATACAGAAGCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/6Nrwd6xqVG" ref_id="SGN-U335930" ref_strand="+" ref_description="SGN-U335930        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 7e-35, score=150)">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0007L14-GJKH6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0007L14.1" temp_strand="+" temp_description="C07SLe0007L14.1  AC232646.1 htgs_phase:1 submitted_to_sgn_as:gi|205831296|gb|AC232646.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0007L14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="52605" stop="53763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52905" g_stop="53463" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0007L14.1" gen_strand="+" ref_id="SGN-U335930" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0007L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52905" e_stop="53463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGTATGTCAAGCAATTCACAATGTAAGTTAAGACCATTAGCAAATGCGGAAGATACATAAGAAAATGTGGATCCGGGATCAAATAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTATGCCCGTCACCTCGTCCGTTTTGGTGACCACCATTTCCTCGACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTGTAACTCTGTTTTGGACAATTTCTCCTAATATGTCCAGTCTCCCCACATCCGTAACACTCTCTGGAGTCAAGCATAGGTCTCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/6Nrwd6xqVG" ref_id="SGN-U335932" ref_strand="+" ref_description="SGN-U335932        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|2190718|gb|AAB64397.1| beta-galactosidase [unidentified cloning vector](evalue: 3e-14, score=80.1)">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0007L14-GJKH6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0007L14.1" temp_strand="+" temp_description="C07SLe0007L14.1  AC232646.1 htgs_phase:1 submitted_to_sgn_as:gi|205831296|gb|AC232646.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0007L14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="53747" stop="54665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53935" g_stop="54367" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0007L14.1" gen_strand="+" ref_id="SGN-U335932" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0007L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53935" e_stop="54367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGATCGGAGGTTTTAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAATGTGCCTATGTCCAATGAGGCCTCCATACGAGGAGCCATAGTGGCTGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGTAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCTACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGTAATCCCTCATTCTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTACCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTTT</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/6Nrwd6xqVG" ref_id="SGN-U335073" ref_strand="+" ref_description="SGN-U335073        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0007L14-GJKH6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0007L14.1" temp_strand="-" temp_description="C07SLe0007L14.1  AC232646.1 htgs_phase:1 submitted_to_sgn_as:gi|205831296|gb|AC232646.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0007L14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="54959" stop="54074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54659" g_stop="54374" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0007L14.1" gen_strand="-" ref_id="SGN-U335073" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0007L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54659" e_stop="54374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTTAGAGGCTATAAGACTTTAGGGAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGGCCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACAACTACGCCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGACACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/6Nrwd6xqVG" ref_id="SGN-U315285" ref_strand="+" ref_description="SGN-U315285        Tomato 200607 #1 [6 ESTs aligned]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacacatagattaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcaggtgtcacgaaccgacacgtagatttaggggatcggagtgtcacgttccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtcctcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggactggatcttcttcttcaagtctcgatgccttgaacttccggcatggactagcttcttatgtatttttagcttttagaatactcatagtttagtcatttgatcgtagatgttcttgtgatgatgacttccagattttggggaataatagatgttgaattttagaagttaatgaattggtctgtatttaatgagtttaagtcttccacattactttctgttgatattatattgaaatgttaaggttagattggttggttcgctcacataggagggtaagtgtgggtgccagtcgcaacccggttttggtcgtgacaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacgagtctagtagagtcttaaggaacggtagggggatgcctttacttttccttgagaggctataagacttttggaaaattccattctttcttctttcgtgctattacttgggtccaattggtatctaggtgatacaaattggtatctgaccatcttcactctatttcgcagatggttagaactagagcaacgactacgccagcatcaacaccagcaccggcgggacagggtgcgactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0007L14-GJKH6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0007L14.1" temp_strand="-" temp_description="C07SLe0007L14.1  AC232646.1 htgs_phase:1 submitted_to_sgn_as:gi|205831296|gb|AC232646.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0007L14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="62146" stop="54101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61846" g_stop="61539" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.831"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61538" i_stop="61428" i_length="111">
            <donor d_prob="0.000" d_score="0.80"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61427" g_stop="61398" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="337" r_length="29" r_score="0.800"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61397" i_stop="55697" i_length="5701">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55696" g_stop="54414" g_length="1283"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="1614" r_length="1277" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0007L14.1" gen_strand="-" ref_id="SGN-U315285" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>1621</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0007L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61846" e_stop="61539"/>
          <exon e_start="61427" e_stop="61398"/>
          <exon e_start="55696" e_stop="54414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCGGTGGAGGTAGGTTA-TGGTT-T-TTATGCTATTCGTAGTAAACTCTTAATAGCGAATTGTATGTATTGATAGTATTGTAAACCCCTCTATATGCTTAATTGTATGCTTGCATGAATATGATTATGTAATTGTGAATAAATAAGCATGATGAAGTTATTGAATCTCAAATCTTGAAAAGAAACCCTAATTCACTTGTTAATGATGATGCCTTAGTATAAAAGAAGGCTTGATAAATTATA-TAATAAGATTGATGATGCCTTGGTACAAAAGAAGGCTTGATAAATT-ATATAATGAGATTGACGATGCCTTGGTGTAAAAGAAGGCTTGATGAATTAGGGGATCGGGTGCCAAGTTCCGGTACCAGGATAGAAATAGAGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATGAGGATCGGAGTGTCACGTTCTGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAATATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATTGAGTGTCACGTTCCGACACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGTGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAAGATGATAATATATTGAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTTGCTACATGCTGAGTATCATAGTTGATTTTATGATATTACTTGATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCATGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCTTCAACTCAACAATAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTTAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTACTTTTAGCTTCTTAGACATTTTTTAGTTAGTAAATTGATCATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGAATAATGATAATTTTTGAGTTATAGAAGTTGATTATTGATTTTACTTATGAGTTAAGTCTTCCGCATTATTTTCTGTTGATATATGTTGAAATGATAAGGGTTAGATTGGTTGGTTCACTCACATAGGTGGGTAAATGTGGGTGCCAGTCGCGGCTCCGATTTTGGGTCGTGACAATTTGTGATTTAAATGAAAGAAAGTAGTATATTTATAGTTTAAAGGGTTAGAGAGAGCTTGAGAATTTTTTGATCCGTTTTTGGCCCCAGCCCAACGGCTACAAGGGCCTAACGGTATAATCAAACAGTAACATTTAAAAAATTTAAAAAACCCGCTGAACCGATTTTTACCGAAGAGGACCGGACCGGACCGGAACCGGATCAACCGAATAAAAATTCGGGTTCCATTTTGGTACATGATCCGGTAACCTACAAGACCGGTTCCTTATCGGTTCAATCGGTACCGGATGAACCGATACGAAAAGCGAACCGAAGTCAGATTTCTACCATAAGTTTAAACTGAAAAACTTTTGGAAGGATAACGACCTTTTAAAATTGGAACTCGTTACTTCGTTTCGTCATTTCTGACTGCTTCAGAACTGTCAAAAACGACCATTCCCAAATTTTATTTTTATTTAGTTGAGTTTGACTAGTATACCAAATTTTCATGGGGGGTTGAGTGTTTTAAACTAACACTTAAAGCGTGCAGCCGTAAGTTTCAAAAAAAATCCTTCATCATTCAAGTTTAACCAGTTACATATAGCATTGCAAGTATGGTTTTATGAGTGTTGTCATCCATTTGACAACACAGTTGCTATCCATGCTTCAGATCGCACACCGCATATCGTGAATTGGAAGACAACAAATGATGTTATCTATTTTAATGATTTGAAGAAAATGATATTTAGAACACATGACGATTAGGTAATTTTTTAGTGAATGTTAGTAAAGTAATTATAAATTATTACACATTCTCATATTTTTCTTTTTGCAGAATAAATTCAAAAATATGGTTTTTACTAAAGAAGAGTTAAATGTCATGGATGGAACCATTTTTAATCAATCTCCAAGTCACCATGATTCTGAAGAGCAAGAAACCTCGAAAAAGCATCACGTTGATTTTGACAAAATTATGTAGAGTTGAATGCAGAAATTGCAAAAGTATAAATAAAAATTACAATTAAAATAGTTTTAAGATACTACGTTATACATATCAAACTTCTTACTGTTTAATGAACAGATTAAGGCGGAGTTGAAAGAGCTCAAAGTTAATATTAGTTTCAATCACATTTAAATTAACTAATATCATTACTGTATGTTTATTTTATTCTTCTAATATATATTTTTTCATATATTGATAAGGTTAACAAGCACATGAATGAAATAAAAACTTACGTCGATAACTCGACTGAGTTGACAGTTGAAGAAATTAGATTGTCAAGAGGTCAACCAACATCAAATGCACAACAACAGATATGGATTAATGTGTTTTCTGTGTATGAATGTTGTTGGATCATAGTATGTATTTGTATTTCTGTTATGTTTTATGATTCAGTATACGAATTTTATACGATTAATAGAAAAAAATTCATATATGTATTAATATTATAAAAATGTTGTATTAATTATGTATTGAACTGTGTTTTCATACATATATGAATAATGTATGAATATTGTATTAGAAATGTATGACACTTTGTTTTTCATATATGTATGAATAATGTAAAATGTTATAATAGAAATGTATGAAACTTTATTTTTATTATATGTATGAATATTGTATAAATGTTATATTAATTATCGTGAAACTGTATACTAATGAAAATGTTTTAATGTTTTGCGTTATTTTACATTTAGTTTAATTATTGTATAAATTAATGTGAAATTGTATACTAATGAAACTTTTATACTAATGTTAATTTAATTCATACAAAATATATTGACGTCGTCTGAAAATAAATATTAGGACGACATCACTCAAAAGGTTGCACAATATGATAAAACTCCATCGGATCAGCCTTCTGTTTCAATGAGTGAATACGTCCACATTTCAAACACCGATGGTATGATATAAACACTATTATGACATTTGTTTCCATTTACGAATTTGTTTTGACCTTACGATTTTTTTCTTATGTAGATAAAGCTCAAAAGTTAACTGGTGATTTTTTCAACGTTGACGTACCTAGATCATCAACTTCAAAACCACCAATTTTGGATGATTATTCTGATTTTACTATGACACAAGTCATTGTAATTGATCCAATTGTAAATGCTACCACAACTCCAGACGTGCAATCAAGATATAGGAATCCCATCAAATATGAATCTTCTCCTTATATTCAACTGTCGAAAGGCGAAATCAGTTCAAAGTGAGTTCTTATTTTCTTCCCACTCAAACATCCATTTGAAAGTCACAATGATTTTGAGGTTCTAGCTGATTTCATCGACGAGTTCAACCAATGGGTTATCAAAGAATTTTCAACAAGGCGTGGCAGGTATAAATGTCAATAAAGCAATTTAGTTTATTTGAATTTCAAAATATCAAATTTATACAATCTATTTTGCAATATTCACAGGAAAGCAACATATTAAAAGGTGAAAAATACCTTTCAACCTCAAATGGACTTTGGCGTAGTCAAAATCGCATAAATTTTTTTTTCATATACTGAGTTAACCAAGCCGACCTTGGGAGGATGGGGTAAGAAATACTTTAAATCAATATTGATTGATTTGTATATAACATACGAACAATTCTATATTGTAGGTTAGTATTTGTCTGAATTCTATGTTAATTGATGCATGCATTGTTGTATTTTAGTATTATATGATTAATGTATGCATTGATGTATATATTGAAGTATTAATAGACATAGTTTTCAGTAAAATGTTCTATGTATGTGAGTATGATTTCTTAGTTGTAAAGTCACAATGTATATTTTTTTATAACCATATTTTGTATTAGTATTTACTTGAATTTTATGTTATTTATGTATGAAATATTATTTTTGGTATTGTATGATTATGTATATTAATTGATATACAAATTAAAGTAGAGAAAAGACATAAAGTCATCACTGATGTTGTCTCGGATTTGTAAAAAAGACACCATAACTTTGCTACTGTCCTATTACCCCATTAAACAATTTTGAACATATATTATAATGTCATTTTTCGAGCAGCCCCAAGTTTTAAGAAGCAAGTGTGTTCACACACCAATTATTATATGACACAATTTAATTTAATTTAATTTAATTTTATCTTAAGTATCTTTTTTTTTAAACTTTATTTCTCTTTCTCTTAATTTTTGACTTTTACTTTAATTTATCTTAAATTTCACATCATCTCCCACCTCCCATTTTCAAGTGACTCATTCCTCCATTATATTTTTTTCTTCACCTCCTACACTCCATGTCAAATTGAGCCCTACTCCCATTTTTTTTATTTTCTTTTTCTTTTTCTTGTGGAATTCTTTATAAAATTTATATTATTTTTTTAGACTTTATTGAATTATTGATAGCAAATTTAATTATTTTTCTAAGAAAATTTAGAAGGTATCATAAACTACTCATTTTCATATAAATTCAAAATTAGAATGATAATTTTAAAAGAATCAATTAATTCTCAAAAATTGGAAGTACTTAATTGAAATCGGATAAAAAAAATCTATATGATACTTTCTATCATCTTGAAATCTAATGGTTTTATCAAATTGTTCGAAATTTAAGAAAATATTTAGATAAAATCTTAAAATTAAAGAGAGTAAAATTAATAGTAATAAAAAAGAAAGATGAAATTGTGATAAGTATGACAACATTGAAAATAAAAAACTTTAATGGATGGAGATGAGAATGGATTTTTGAAGAAGAAAGAAGAAAGAAGAAAGAACAAAGAACAAAGAACAAAGAGCAAGAAAAAATAAAAAGGAAAACAAGTTAAAATAACATGAAAAATAAGAAAATATATTTTACAATAAAATACTTCTAAAAAATAAAATTATATTATTTATTATAGGTTGCTCACTCTCTTTGAGAGAGTTCTGTAACGACCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTCTGGAAAAACAGGCTGAGGCGACGGACCCAACGACGGACCGTCATGGGCACGACGGACCATCGCAGGGTCTCATTTCAAAACACTTAGAAAAACTGAAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGAAATGGCAGGACGGACCGTCAAAGGTGTGACGGACCGTCACAAACCCTTGGTGGAAATTTGGGTCTCTGAACTTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGCCCGTCACAGGTTGCGCAAATCCCAGTCTGGGTCGGATTTCTTCATACGTTTTAAGGGACGTTTTTGACTATTCTTGCCTTAATTATAAAGTTAGTGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGGCATTATTGCCATCTTTTATTCTTAATTATATGTTCATTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAAATAGAAAGAACAAGGAGAGACAGAAAAAGAAAGAGAACGAGTAGAGAGAGAGAGAAACGAAGAGGATAGCAAGGATTTTGAGAAGATAGCTTGCTGATCACTAGTCTTCGGTGGAGTTAGGTTATGGTTTTCATGCTTTCATAGTAAACTCTTAATAGAGAATGATATATATTGATAGTATTGTAAACCCTGCTATGTGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTGATTATATTAAGCATGATGAAGTTATTGAATCCCAAATCTTGATAAAAACCTAGTCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACCTTTTGATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAGTTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGTGTGTCACGAACCGACACGAAGATTTAGGGGATCGGGTGTCACGAACCGACGTGTAGATTTAGGGGATCGG-GTGTCACGAACCGACACGTAGATTTAGAGGATCGGAGTGTCACGTACCGACACAAGAGTATTAATGAATA-TGAGGGAGCGGAGTGTCACGTGCCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGTGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTTATGGTAATTGTTAATGATGTAGTGCTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGACCTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGAAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTTTTTTTTTTAGCTTTTAGAATAGTCTTAGTTTAGTCATTTGATCGTAGATGTTCTTGTGATGATGACTTTCATATTTTGGGGAATAATAGATGTTGAA-TTTAGAAGTTAATGAATTGGTCTTTATTTAATGAGTTTAAGTCTTCCGCATTTCTTTCTGTTGATATTATATTGAAATGTTAAGGTTTAGATTGATTGGTTCTCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGGCCCGGTTTGGGTCGTGACAAACTTGGTATTAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTTAGAGGCTATAAGACTTTAGGGAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGGCCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACAACTACGCCAACACCAACACCG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTG-TAA-AAA-CCTAA-TCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATT-AGG...............................................................................................................GGATCGG-GTGTCACGAACTGACACGTAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACATAG-ATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCAGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTTCCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCCTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTCGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATG---TATTTTTAGCTTTTAGAATACTCATAGTTTAGTCATTTGATCGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTCTGTATTTAATGAGTTTAAGTCTTCCACATTACTTTCTGTTGATATTATATTGAAATGTTAAGG-TTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGGTTTTGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTT-TGGAAAATT--C-CATTCTTTC-TTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAGCATCAACACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/6Nrwd6xqVG" ref_id="SGN-U335078" ref_strand="+" ref_description="SGN-U335078        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 1e-06, score=56.6)">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0007L14-GJKH6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0007L14.1" temp_strand="+" temp_description="C07SLe0007L14.1  AC232646.1 htgs_phase:1 submitted_to_sgn_as:gi|205831296|gb|AC232646.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0007L14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="79313" stop="80582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79613" g_stop="79879" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79880" i_stop="80032" i_length="153">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80033" g_stop="80282" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="515" r_length="250" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0007L14.1" gen_strand="+" ref_id="SGN-U335078" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0007L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79613" e_stop="79879"/>
          <exon e_start="80033" e_stop="80282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGTTAATGATGATGCCTTGATATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATACAGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCAGTTCCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTTCGGTACCAGGATAGAATATAAGGATCGGAGTGTCACGTTCCGACACAAGGATAGAATATGTATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATTGGGTGCCACGTTCCGGTACCAGGATAGAATGAGGATCAGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAATGATAATGAATCTTGAAATATGTTAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTACTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTGGTTGATTTTATGATATTGCTTAATACATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATAT--GGATCGGG.........................................................................................................................................................TGCCACGTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/6Nrwd6xqVG" ref_id="SGN-U335073" ref_strand="+" ref_description="SGN-U335073        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0007L14-GJKH6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0007L14.1" temp_strand="+" temp_description="C07SLe0007L14.1  AC232646.1 htgs_phase:1 submitted_to_sgn_as:gi|205831296|gb|AC232646.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0007L14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="80498" stop="81364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80784" g_stop="81064" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0007L14.1" gen_strand="+" ref_id="SGN-U335073" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0007L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80784" e_stop="81064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAAC---T--AGTAGAGTCTTAAGGAACGGTAGGGGGACACCTTTACTTTTCCTTCAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGTTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCGACCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/6Nrwd6xqVG" ref_id="SGN-U335932" ref_strand="+" ref_description="SGN-U335932        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|2190718|gb|AAB64397.1| beta-galactosidase [unidentified cloning vector](evalue: 3e-14, score=80.1)">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0007L14-GJKH6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0007L14.1" temp_strand="-" temp_description="C07SLe0007L14.1  AC232646.1 htgs_phase:1 submitted_to_sgn_as:gi|205831296|gb|AC232646.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0007L14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="81803" stop="80771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81503" g_stop="81071" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0007L14.1" gen_strand="-" ref_id="SGN-U335932" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0007L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81503" e_stop="81071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGATCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCTGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTTAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGCGCTCTTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/6Nrwd6xqVG" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0007L14-GJKH6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0007L14.1" temp_strand="+" temp_description="C07SLe0007L14.1  AC232646.1 htgs_phase:1 submitted_to_sgn_as:gi|205831296|gb|AC232646.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0007L14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="80839" stop="81991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81138" g_stop="81691" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0007L14.1" gen_strand="+" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0007L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81138" e_stop="81691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTAAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCAGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCGATCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATCGTAGAACAGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/6Nrwd6xqVG" ref_id="SGN-U317064" ref_strand="+" ref_description="SGN-U317064        Tomato 200607 #1 [6 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 5e-64, score=248)">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccgggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagctgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgtcgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0007L14-GJKH6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0007L14.1" temp_strand="-" temp_description="C07SLe0007L14.1  AC232646.1 htgs_phase:1 submitted_to_sgn_as:gi|205831296|gb|AC232646.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0007L14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="82878" stop="80842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82578" g_stop="81142" g_length="1437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1437" r_length="1437" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0007L14.1" gen_strand="-" ref_id="SGN-U317064" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>1437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0007L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82578" e_stop="81142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCATTGCCCCTACCTTGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCACCACGTCCTCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTTTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGATTGAATTGGTCGGACTGAGTATCTTCCCGAACTCTATCCTCTAGTGTAAGCACAATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGGGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTTACAAATCGGCGAATTCGCTCTTGTGGACTGAAACACAGTTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACTGTTCTACGATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGATCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCTGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTTAGTTTCCCCAT-CCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCGGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/6Nrwd6xqVG" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0007L14-GJKH6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0007L14.1" temp_strand="+" temp_description="C07SLe0007L14.1  AC232646.1 htgs_phase:1 submitted_to_sgn_as:gi|205831296|gb|AC232646.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0007L14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="81465" stop="83473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81765" g_stop="81951" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81952" i_stop="82695" i_length="744">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82696" g_stop="83209" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="694" r_length="507" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0007L14.1" gen_strand="+" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0007L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81765" e_stop="81951"/>
          <exon e_start="82696" e_stop="83209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGAATTCGCCGATTTGTAAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCCCGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATTGTGCTTACACTAGAGGATAGAGTTCGGGAAGATACTCAGTCCGACCAATTCAATCTTCACTACAGACTGTAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTGTCCAAAAAAGAGTTACAGACCTCCAAATGTTAGAGGTAGAGGTGGTCATGGCAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGAAATGGTGGTCACCAAAACGGCCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACAAGGTAGGGGCAATGGACAGACGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTGTATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGGTTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCACAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTATTGGCACATCTCAAGGATGACACTACCCAAGTGTCTTCGATTGAGTCGGTTTCAGTAGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTCGAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTTTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGG-TTTTGTTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/6Nrwd6xqVG" ref_id="SGN-U335930" ref_strand="+" ref_description="SGN-U335930        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 7e-35, score=150)">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0007L14-GJKH6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0007L14.1" temp_strand="-" temp_description="C07SLe0007L14.1  AC232646.1 htgs_phase:1 submitted_to_sgn_as:gi|205831296|gb|AC232646.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0007L14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="82882" stop="81724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82582" g_stop="82024" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0007L14.1" gen_strand="-" ref_id="SGN-U335930" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0007L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82582" e_stop="82024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCATTGCCCCTACCTTGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCACCACGTCCTCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTTTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGATTGAATTGGTCGGACTGAGTATCTTCCCGAACTCTATCCTCTAGTGTAAGCACAATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/6Nrwd6xqVG" ref_id="SGN-U335939" ref_strand="+" ref_description="SGN-U335939        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-47, score=191)">
      <seq>gaacacatccaaaaattctcaaactaccaaaactaattcaattgagggtacttggatagtgtcatccttgagatgtgccaagaaggatagacaacccttactaaccatcttctgagcacaaagaaaggagataatacgcaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaattgggagaaagccaagtcatacccagaattacatcaaagtcacccatttctaaagtaaccaaatctagataagtgttgctccccacgaaattcaccaaacaagacctatgtaccttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagtaattcacaatgcaattttagaccattagcaaatgatgaagatacatatgaaaacgtggagccagggtcaaataatacagatgccatgcaatcacaaaccaagagattacctgtgataacagcatcagacgcctctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0007L14-GJKH6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0007L14.1" temp_strand="-" temp_description="C07SLe0007L14.1  AC232646.1 htgs_phase:1 submitted_to_sgn_as:gi|205831296|gb|AC232646.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0007L14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="83265" stop="82123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82965" g_stop="82423" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0007L14.1" gen_strand="-" ref_id="SGN-U335939" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0007L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82965" e_stop="82423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACATCCAGAAACTCACGGACTACTGAAACCGACTCAATCGAAGACACTTGGGTAGTGTCATCCTTGAGATGTGCCAATAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAACCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGC</genome_strand>
        <mrna_strand>GAACACATCCAAAAATTCTCAAACTACCAAAACTAATTCAATTGAGGGTACTTGGATAGTGTCATCCTTGAGATGTGCCAAGAAGGATAGACAACCCTTACTAACCATCTTCTGAGCACAAAGAAAGGAGATAATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTGGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCACCCATTTCTAAAGTAACCAAATCTAGATAAGTGTTGCTCCCCACGAAATTCACCAAACAAGACCTATGTACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGCAATTTTAGACCATTAGCAAATGATGAAGATACATATGAAAACGTGGAGCCAGGGTCAAATAATACAGATGCCATGCAATCACAAACCAAGAGATTACCTGTGATAACAGCATCAGACGCCTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/6Nrwd6xqVG" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0007L14-GJKH6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0007L14.1" temp_strand="-" temp_description="C07SLe0007L14.1  AC232646.1 htgs_phase:1 submitted_to_sgn_as:gi|205831296|gb|AC232646.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0007L14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="83492" stop="82135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83192" g_stop="82435" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0007L14.1" gen_strand="-" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0007L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83192" e_stop="82435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAAAAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCGAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACTACTGAAACCGACTCAATCGAAGACACTTGGGTAGTGTCATCCTTGAGATGTGCCAATAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAACCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATC</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/6Nrwd6xqVG" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0007L14-GJKH6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0007L14.1" temp_strand="-" temp_description="C07SLe0007L14.1  AC232646.1 htgs_phase:1 submitted_to_sgn_as:gi|205831296|gb|AC232646.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0007L14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="83089" stop="82159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82789" g_stop="82459" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0007L14.1" gen_strand="-" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0007L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82789" e_stop="82459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAACCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/6Nrwd6xqVG" ref_id="SGN-U335935" ref_strand="+" ref_description="SGN-U335935        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-78, score=295)">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0007L14-GJKH6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0007L14.1" temp_strand="-" temp_description="C07SLe0007L14.1  AC232646.1 htgs_phase:1 submitted_to_sgn_as:gi|205831296|gb|AC232646.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0007L14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="83561" stop="82303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83261" g_stop="82603" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0007L14.1" gen_strand="-" ref_id="SGN-U335935" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0007L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83261" e_stop="82603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAAAAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCGAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACTACTGAAACCGACTCAATCGAAGACACTTGGGTAGTGTCATCCTTGAGATGTGCCAATAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAACCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/6Nrwd6xqVG" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0007L14-GJKH6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0007L14.1" temp_strand="-" temp_description="C07SLe0007L14.1  AC232646.1 htgs_phase:1 submitted_to_sgn_as:gi|205831296|gb|AC232646.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0007L14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="84081" stop="82769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83781" g_stop="83069" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0007L14.1" gen_strand="-" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0007L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83781" e_stop="83069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACGAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGATACATTAGTAGGTCTTACCCGATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCTATTGATGATAATCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAAAAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTC-TTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/6Nrwd6xqVG" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0007L14-GJKH6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0007L14.1" temp_strand="-" temp_description="C07SLe0007L14.1  AC232646.1 htgs_phase:1 submitted_to_sgn_as:gi|205831296|gb|AC232646.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0007L14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="85562" stop="84785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85262" g_stop="85086" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0007L14.1" gen_strand="-" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0007L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85262" e_stop="85086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTCCCATACAATGCTTTAAATGGGGCCATATCAATACTGGAGTGATAGCTATTATTGTATGAAAACTCCACTAAGGGTAGGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/6Nrwd6xqVG" ref_id="SGN-U317408" ref_strand="+" ref_description="SGN-U317408        Tomato 200607 #1 [19 ESTs aligned] arabidopsis/peptide: | Symbol: None | aspartate aminotransferase, cytoplasmic isozyme 1 / transaminase A (ASP2), identical to SP:P46645 Aspartate aminotransferase, cytoplasmic isozyme 1 (EC 2.6.1.1) (Transaminase A) {Arabidopsis thaliana} | chr5:6598108-6601821 FORWARD | Aliases: T20D1.70, T20D1_70(evalue: 0, score=697) genbank/nr: gi|112972|sp|P28734|AATC_DAUCA Aspartate aminotransferase, cytoplasmic (Transaminase A) gi|7434096|pir||T14311 aspartate transaminase (EC 2.6.1.1), cytosolic [similarity] - carrot gi|167546|gb|AAA33134.1| aspartate aminotransferase gi|445587|prf||1909339A Asp aminotransferase(evalue: 0, score=713)">
      <seq>tggttttgaaccgcccactgtgtcatagagatacaggtggcgtattgcacgcagttcccaaagaagcgaacaatacttactttttattcattaattaaaggaggaaggtgtactgaactcacctccataacaccgttgaacttgtactctaaaattccaactctaatggcagattctgtttttgctcatgttgttcgtgctcctgaagatcccatcttaggggtaacagttgcttataacaatgatagcagcccagtcaaagtgaatttgggtgttggcgcatatcgaactgaggaaggaaaacctcttgttcctaatgtggtgagacgagctgaacaaatgcttgtcaatgacacgtctcgtgtgaaggaatatctctcaattactggaatagccgattttaacaaattgagtgccaagctcatatttggtgctgacagccctgccattaaagagaatagggtgaccactgttcagtgtttgtcgggcactggttctctgagggttggtgctgagtttctggccaggcattatcatgaacatactatatatataccacagccaacatggggaaaccatcctaagattttcactttagctgggctttcagtaaaatattatcgttactatgacccagcaacgcgaggcctggattttcaaggattattggatgatcttactgctgcacccgttggtgcaatagttcttctccatgcttgtgctcataacccaactggcgttgatccaacaattgaccagtgggagaaaatcaggcagttgatgaggtccaaggggttgttacctttctttgacagtgcttatcagggttttgccagtggcaaactagatgcagatgcacaatctgtccgcatgtttgtggctgatggtggtgaatgtcttgcagctcagagttatgccaaaaacatgggactgtatggagagcgtgtcggtgcccttagcattgtttgcaaagatagcgatgttgcaagcaaagtcgaaagccagctaaagatggttataaggccaatgtactcaaatccgccgattcatggtgcgtctattgttgccactatactcaaggacagacaaatgtatgatgaatggactgttgagctgaaagcaatggctgacagaattattagcatgcgccagcaactctatgctgccatgcaagctcgaggtactccaggtgattggagtcatatcatcaagcaaattgggatgtttactttcacaggattgaatgctgagcaagtctcattcatgactagcgagtatcacatttacatgacatctgatgggagaattagcatggcaggtcttagttctcggacagttcctcatcttgctgatgccatgcatgctgctattactagggtggcctagactagttgcattcaagagcagtttaactgaagatattaaatctactttccatgatcgcgtccttgtcctttgatgctaaataagactaatgtgtctatgtggacataatgtttcggaatttcattctaaaggaatttgatgaggtcttctgcgcaggcgaaatgtcatgaatttcttattttcttgcacatgtttgttgattgatgaattagaaatattggactcacatacttgggaaaataataataatcctaggttgcttgctattgtgaatgatttttctacttaaaactatgaagtgagttatggtgctttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0007L14-GJKH6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0007L14.1" temp_strand="+" temp_description="C07SLe0007L14.1  AC232646.1 htgs_phase:1 submitted_to_sgn_as:gi|205831296|gb|AC232646.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0007L14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="94869" stop="100609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95169" g_stop="95390" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95391" i_stop="95561" i_length="171">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95562" g_stop="95633" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="294" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95634" i_stop="96618" i_length="985">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96619" g_stop="96680" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="356" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96681" i_stop="96771" i_length="91">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.759" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96772" g_stop="96855" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="440" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96856" i_stop="97555" i_length="700">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97556" g_stop="97655" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="540" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97656" i_stop="97742" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97743" g_stop="97863" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="661" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97864" i_stop="98135" i_length="272">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.617" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98136" g_stop="98299" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="825" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98300" i_stop="98437" i_length="138">
            <donor d_prob="0.460" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98438" g_stop="98575" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="826" r_stop="963" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="98576" i_stop="98896" i_length="321">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="98897" g_stop="99018" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="964" r_stop="1085" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="99019" i_stop="99109" i_length="91">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="99110" g_stop="99204" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1086" r_stop="1180" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="99205" i_stop="99355" i_length="151">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="99356" g_stop="99476" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1181" r_stop="1301" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="99477" i_stop="99907" i_length="431">
            <donor d_prob="0.821" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="99908" g_stop="100309" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1302" r_stop="1703" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0007L14.1" gen_strand="+" ref_id="SGN-U317408" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0007L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95169" e_stop="95390"/>
          <exon e_start="95562" e_stop="95633"/>
          <exon e_start="96619" e_stop="96680"/>
          <exon e_start="96772" e_stop="96855"/>
          <exon e_start="97556" e_stop="97655"/>
          <exon e_start="97743" e_stop="97863"/>
          <exon e_start="98136" e_stop="98299"/>
          <exon e_start="98438" e_stop="98575"/>
          <exon e_start="98897" e_stop="99018"/>
          <exon e_start="99110" e_stop="99204"/>
          <exon e_start="99356" e_stop="99476"/>
          <exon e_start="99908" e_stop="100309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTTGAACCGCCCACTGTGTCATAGAGATACAGGTGGCGTATTCCACGCAGTTCCCAAAGAAGCGAACAATACTTACTTTTTATTCATTAATTAAAGGAGGAAGGTGTACTGAACTCACCTCCATAACACCGTTGAACTTGTACTCTAAAATTCCAACTCTAATGGCAGATTCTGTTTTTGCTCATGTTGTTCGTGCTCCTGAAGATCCCATCTTAGGGGTGGGTATATACCTCTCTGCTCCTCTTTGTTTTTGTTCTTAAGACTTATAAAAATTAATAATCAGTTGATGATTTGATCTTCGACATCATTTGATTTGATTGATAGCTGTGTGCTTTTAGATTCTATTGCATGGATCTAGGTTTTAATCTTATTTTGATTCAATAATACAGGTAACAGTTGCTTATAACAATGATAGCAGCCCAGTCAAAGTGAATTTGGGTGTTGGCGCATATCGAACTGAGGTCTCTCTCACTCACTCACTCACTCTTTTCCTTCCTATTTCTTTAATTAATCTACATAAAACTTGTTCATTCAATGAATCTTTATTCCATCTCCTCCCTTTTATGTATAATGAATAAAATTAAATCAATTATATTTGTTTCCATTATTTAGGGATGGCAATGGGATTTTGGAGTGGGGGGGGGGGGAGGTCTAAGGCTATGCGGGGCGGAGCGGGTTGAAGTGTGCCTTTTGAAAACTAACGTGCGGCGGGGCGGGTTCAGGTGTTTTTTTTGAAAACTAACGCGGGGCGGTGCGGGTTCAAGTGTTTTTTTTATAAAACTAACGGTGGGCGGGGCGAGTTGAAGTGGTTTTTTTGAAAACTAACGCGGGGCGGGGCAGGTTCAAGTGTTTTTTTTTTAAACTAACGTGGGCAGGGCGAGTTGAAGTGATTTTTTTGAAAACTAACGCAGGGCGGGTTGAAGTGGTTTTTTTAGAAAACTAACGTGGGGCGGGACGGGTTGTAGGTAGATGCAATTTTATATGGGTTGAGCATTATTTAAGATAAATTTCTTTAAACTATTCAAGATAGTAAATGAAAATGGTTCATTTCCAATTGTCCTCTAAAAAATATATTTTTTAAAATTCAGTATCGTATTAAATTAATACAACTTAATAAAAAAATGTATTTATTTTTATGAGATATAATTTTAGTATCAAACTTAACTAGAAAAAGGATGTATTAAAAAATTATGCGATGCAGGTCTATGCGGGCGGGGTGGGGCAGTTAATTGTTATGCGGGGCGGGTGGATTGAAATTTTGCTGGTTAAGCTCAACCCGACAGCTCCATTGCCATCCCTATCATTATTGCCATCTCTACGAATGTTGCAATGATACAAATAAAGATATTTTCTCACTGCTACCTTTTTTTTAGTGATTGTTTCTTTATAAGCTAAATTGTTATTGTAAAGCTTGAAGAATCATTATTCTAATGCCAACTATGACAGGAAGGAAAACCTCTTGTTCCTAATGTGGTGAGACGAGCTGAACAAATGCTTGTCAATGACACGTGAGTTGGTTGCTGAATTAGACACTTATCTTATGAGAAGATATAATCACTTGAAACCATCATATTAATTTAAGGCTACTATATAATGTAGGTCTCGTGTGAAGGAATATCTCTCAATTACTGGAATAGCCGATTTTAACAAATTGAGTGCCAAGCTCATATTTGGTGCTGACAGGTTTGGAGATTTTCCTCTCTTCCTAAATATTGCTGGAGTTTAAATGGGTGCATTTTCTAGTACGAGACAGTCCATACATATCTGTTTCTATCTCTTTTCTTCTGTAAGTTCATGTCTTTTTCACGTTTGCTTATTGGAAGGTGAAAATTGTGGTAGTGTCTTCTTGAAGCACCTTTTCTTTTACATAATCCATACATGTCGTGCATACATCCTTTTCTTATTGATAGTAAAGGGCTGCTCACCACTTATCATCAACAACTACTACGCTTCGATGCCAAGCTAGCTACTGAATTATCACTGTGCATGTCCATTCCATTTAGACCTGTCTGGCTTAACCAGTTATCTCTTTAAAGAGAAGAAATGCTGCTGAACCTTCAAAGTTCTTCCTTCAGTCTTGCTTGATATTTGGATGAGAGTTGCATTATCCCTGCAATATAGAGAAACTGATGAGCTTTATTTGGTATTTCATCTTATTATCACGGCCTTGCATCATAAGAAAATTGTTCTAAGACTTCTTTTTCCCTCCTTTTTGTGGTACTGATTATCTGTGCATGGTGAATGTGATATCAAGAATTCTGTTTCTTTTATCATGATTACTCCTTGTTTAATTGAGTTATGAGTTATTAATTTACTTTTAAGGACATCAGCAGATATATTTAAATGTATCTATGCTTATGTATTTGTTCCGTTGCTGATACAGCCCTGCCATTAAAGAGAATAGGGTGACCACTGTTCAGTGTTTGTCGGGCACTGGTTCTCTGAGGGTTGGTGCTGAGTTTCTGGCCAGGCATTATCATGAAGTAAGTATTCCTTACTGTCTTTTCCCTTTATATGTCTGAATCAAAATGACACTTGAATGAACATTCTACTGTTTGTCTTGTTTCCAGCATACTATATATATACCACAGCCAACATGGGGAAACCATCCTAAGATTTTCACTTTAGCTGGGCTTTCAGTAAAATATTATCGTTACTATGACCCAGCAACGCGAGGCCTGGATTTTCAAGGTACCACTGTTACCAATGTACTTCAGTACTCTTGTAAATAAGAACAGACTCTAAAAAGAATAAAGAAAAATAACTGACTCTTTTTATGCAGTAACTTTCTCCTTGTCATGTTTGGATAGTTCTATAATTTATGTGTACCTAGAACAAGATCTTTGTTCCTTTTATTTAATTTTGCTTTTCTTTGCTATAGACATAATCACCTTATCTGTGACTTCCCCTGCTTTTGGTGTTGAGTAGACTTAAAAAAGGTGGGCTTATTATGACCCCTGCAGGATTATTGGATGATCTTACTGCTGCACCCGTTGGTGCAATAGTTCTTCTCCATGCTTGTGCTCATAACCCAACTGGCGTTGATCCAACAATTGACCAGTGGGAGAAAATCAGGCAGTTGATGAGGTCCAAGGGGTTGTTACCTTTCTTTGACAGTGCTTATCAGGTTAAGCTTAAGATGGGATTCTGAGATTCAAGTGATCTTCGTTTAGAATGATTGCTAAATAATTTGAAGCCCACAACCTATGTACTAATGGGCTGCTTAACTGACCCTACTGTATTACATTTTTTCTTGATATTGCAGGGTTTTGCCAGTGGCAAACTAGATGCAGATGCACAATCTGTCCGCATGTTTGTGGCTGATGGTGGTGAATGTCTTGCAGCTCAGAGTTATGCCAAAAACATGGGACTGTATGGAGAGCGTGTCGGTGCCCTTAGCATTGTAAGTCTTTCCACAGTTTAGTTACTTTCCCTTTTTATTAAGTGATACAATTGGGGGCTGAAGAATTATCCTACTATTTTTGTCTTAAAGATGCTGTTTTTCTTTAAATACACTATTCAAGTTGTATTCCCTGAAAAGCTAAAAAGCTCTGCAGCACAGTGAACAGAGTCTCTAAAGATTCACAGCCAGTTTTGAAAGATATGAAGGATGCTTTGTTTGGTAGTGTGCACTTGTTTACTTGGTGTTGCGGCCTTGATACAATTCTGGGATTTTGTTATCCTCTCTCTTCTTTTGTGTGTGGCCATGATGTTTTTATTGTAGGTTTGCAAAGATAGCGATGTTGCAAGCAAAGTCGAAAGCCAGCTAAAGATGGTTATAAGGCCAATGTACTCAAATCCGCCGATTCATGGTGCGTCTATTGTTGCCACTATACTCAAGGACAGGTTTGTGCAGCTATTTCAATATTCTCTTCACGTGTCAGTAGATAGTATATAGCTTCTGCATTTTGATGTGGTTGTTATCTATTCGTAATAGACAAATGTATGATGAATGGACTGTTGAGCTGAAAGCAATGGCTGACAGAATTATTAGCATGCGCCAGCAACTCTATGCTGCCATGCAAGCTCGAGGTATCTGATTTACTGATTTGTTCTTTCTAGTGAGACGTGCTGTGTCTGTCTGATTGGTGTGACTGGTACTGCTATGAGAACTTTTTCTGGAGAAAACACATGTAATTGTTCAGTTTAGTATTATTAATGCAATTTTAATTCTATTTTGCAGGTACTCCAGGTGATTGGAGTCATATCATCAAGCAAATTGGGATGTTTACTTTCACAGGATTGAATGCTGAGCAAGTCTCATTCATGACTAGCGAGTATCACATTTACATGACATCTGATGGGTAAGGACACCAGACTGTTGATGGTGGTTTCATTCTTTAGTTTGTTACGGTGGATCACTTGGGAACTTAATGAATTCAAACTTAGAAGTGCTTATTGTTGATTGTTTCGGCTTGAATTCTTTAGTAAGGAGAAATTTCAAACTAGAAGTTTCAGTTTGGAAAATAAGCATAAGAAAGTTCAGCTCTGTCATCCATATCAGTACTTAAGTTTACCGAAGAGATTGTAGCTACTGTTTTTCTTCCCCTCCTTCCTAATTATACCGCTTTTCTAAAAGCATTACATCCAATCCATGGCATATTCACTTCTCTGGTATGAGTTGGAACATCTTTGTTGAAGTTGGATTTGGTTAAAATAGATGCTCATTAGTAGTGACATTTTTCTCCTAGAAGTTTTTGAAAGAGGAATCATTTTTCTTCTTTCTCATTTGCAGGAGAATTAGCATGGCAGGTCTTAGTTCTCGGACAGTTCCTCATCTTGCTGATGCCATGCATGCTGCTATTACTAGGGTGGCCTAGACTAGTTGCATTCAAGAGCAGTTTAACTGAAGATATTAAATCTACTTTCCATGATCGCGTCCTTGTCCTTTGATGCTAAATAAGACTAATGTGTCTATGTGGACATAATGTTTCGGAATTTCATTCTAAAGGAATTTGATGAGGTCTTCTGCGCAGGCGAAATGTCATGAATTTCTTATTTTCTTGCACATGTTTGTTGATTGATGAATTAGAAATATTGGACTCACATACTTGGGAAAATAATAATAATCCTAGGTTGCTTGCTATTGTGAATGATTTTTCTACTTAAAACTATGAAGTGAGTTATGGTGCTTTAC</genome_strand>
        <mrna_strand>TGGTTTTGAACCGCCCACTGTGTCATAGAGATACAGGTGGCGTATTGCACGCAGTTCCCAAAGAAGCGAACAATACTTACTTTTTATTCATTAATTAAAGGAGGAAGGTGTACTGAACTCACCTCCATAACACCGTTGAACTTGTACTCTAAAATTCCAACTCTAATGGCAGATTCTGTTTTTGCTCATGTTGTTCGTGCTCCTGAAGATCCCATCTTAGGG...........................................................................................................................................................................GTAACAGTTGCTTATAACAATGATAGCAGCCCAGTCAAAGTGAATTTGGGTGTTGGCGCATATCGAACTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAAAACCTCTTGTTCCTAATGTGGTGAGACGAGCTGAACAAATGCTTGTCAATGACAC...........................................................................................GTCTCGTGTGAAGGAATATCTCTCAATTACTGGAATAGCCGATTTTAACAAATTGAGTGCCAAGCTCATATTTGGTGCTGACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTGCCATTAAAGAGAATAGGGTGACCACTGTTCAGTGTTTGTCGGGCACTGGTTCTCTGAGGGTTGGTGCTGAGTTTCTGGCCAGGCATTATCATGAA.......................................................................................CATACTATATATATACCACAGCCAACATGGGGAAACCATCCTAAGATTTTCACTTTAGCTGGGCTTTCAGTAAAATATTATCGTTACTATGACCCAGCAACGCGAGGCCTGGATTTTCAAG................................................................................................................................................................................................................................................................................GATTATTGGATGATCTTACTGCTGCACCCGTTGGTGCAATAGTTCTTCTCCATGCTTGTGCTCATAACCCAACTGGCGTTGATCCAACAATTGACCAGTGGGAGAAAATCAGGCAGTTGATGAGGTCCAAGGGGTTGTTACCTTTCTTTGACAGTGCTTATCAG..........................................................................................................................................GGTTTTGCCAGTGGCAAACTAGATGCAGATGCACAATCTGTCCGCATGTTTGTGGCTGATGGTGGTGAATGTCTTGCAGCTCAGAGTTATGCCAAAAACATGGGACTGTATGGAGAGCGTGTCGGTGCCCTTAGCATT.................................................................................................................................................................................................................................................................................................................................GTTTGCAAAGATAGCGATGTTGCAAGCAAAGTCGAAAGCCAGCTAAAGATGGTTATAAGGCCAATGTACTCAAATCCGCCGATTCATGGTGCGTCTATTGTTGCCACTATACTCAAGGACAG...........................................................................................ACAAATGTATGATGAATGGACTGTTGAGCTGAAAGCAATGGCTGACAGAATTATTAGCATGCGCCAGCAACTCTATGCTGCCATGCAAGCTCGAG.......................................................................................................................................................GTACTCCAGGTGATTGGAGTCATATCATCAAGCAAATTGGGATGTTTACTTTCACAGGATTGAATGCTGAGCAAGTCTCATTCATGACTAGCGAGTATCACATTTACATGACATCTGATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAATTAGCATGGCAGGTCTTAGTTCTCGGACAGTTCCTCATCTTGCTGATGCCATGCATGCTGCTATTACTAGGGTGGCCTAGACTAGTTGCATTCAAGAGCAGTTTAACTGAAGATATTAAATCTACTTTCCATGATCGCGTCCTTGTCCTTTGATGCTAAATAAGACTAATGTGTCTATGTGGACATAATGTTTCGGAATTTCATTCTAAAGGAATTTGATGAGGTCTTCTGCGCAGGCGAAATGTCATGAATTTCTTATTTTCTTGCACATGTTTGTTGATTGATGAATTAGAAATATTGGACTCACATACTTGGGAAAATAATAATAATCCTAGGTTGCTTGCTATTGTGAATGATTTTTCTACTTAAAACTATGAAGTGAGTTATGGTGCTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/6Nrwd6xqVG" ref_id="SGN-U317409" ref_strand="+" ref_description="SGN-U317409        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | aspartate aminotransferase, cytoplasmic isozyme 1 / transaminase A (ASP2), identical to SP:P46645 Aspartate aminotransferase, cytoplasmic isozyme 1 (EC 2.6.1.1) (Transaminase A) {Arabidopsis thaliana} | chr5:6598108-6601821 FORWARD | Aliases: T20D1.70, T20D1_70(evalue: 3e-16, score=81.6) genbank/nr: gi|57900353|dbj|BAD87343.1| putative aspartate aminotransferase [Oryza sativa (japonica cultivar-group)] (evalue: 6e-17, score=89.7)">
      <seq>ttgaacttgtactctaaaattccaactctaatggcagattctgtttttgctcatgttgttcgtgctcctgaagatcccatcttaggggtaacagttgcttataacaatgatagcagcccagtcaaagtgaatttgggtgttggcgcatatcgaactgaggtctatgcgggcggggtggggcagttaattgttatgcggggcgggtggattgaaattttgctggttaagctcaacccgacagctccattgccatccctatcattattgccatctctacgaatgttgcaatgatacaaataaagatattttctcactgctaccttttttttagtgattgtttctttataagctaaattgttattgtaaagcttgaagaatcattattctaatgccaactatgacaggaaggaaaacctcttgttcctaatgtggtgagacgagctgaacaaatgcttgtcaatgacacgtctcgtgtgaaggaatatctctcaattactggaatagccgattttaacaaattgagtgccaagctcatatttggtgctgacagccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0007L14-GJKH6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0007L14.1" temp_strand="+" temp_description="C07SLe0007L14.1  AC232646.1 htgs_phase:1 submitted_to_sgn_as:gi|205831296|gb|AC232646.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0007L14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="95004" stop="97155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95304" g_stop="95390" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95391" i_stop="95561" i_length="171">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95562" g_stop="95633" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="159" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95634" i_stop="96373" i_length="740">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96374" g_stop="96680" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="466" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96681" i_stop="96771" i_length="91">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.759" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96772" g_stop="96855" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="550" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0007L14.1" gen_strand="+" ref_id="SGN-U317409" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0007L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95304" e_stop="95390"/>
          <exon e_start="95562" e_stop="95633"/>
          <exon e_start="96374" e_stop="96680"/>
          <exon e_start="96772" e_stop="96855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAACTTGTACTCTAAAATTCCAACTCTAATGGCAGATTCTGTTTTTGCTCATGTTGTTCGTGCTCCTGAAGATCCCATCTTAGGGGTGGGTATATACCTCTCTGCTCCTCTTTGTTTTTGTTCTTAAGACTTATAAAAATTAATAATCAGTTGATGATTTGATCTTCGACATCATTTGATTTGATTGATAGCTGTGTGCTTTTAGATTCTATTGCATGGATCTAGGTTTTAATCTTATTTTGATTCAATAATACAGGTAACAGTTGCTTATAACAATGATAGCAGCCCAGTCAAAGTGAATTTGGGTGTTGGCGCATATCGAACTGAGGTCTCTCTCACTCACTCACTCACTCTTTTCCTTCCTATTTCTTTAATTAATCTACATAAAACTTGTTCATTCAATGAATCTTTATTCCATCTCCTCCCTTTTATGTATAATGAATAAAATTAAATCAATTATATTTGTTTCCATTATTTAGGGATGGCAATGGGATTTTGGAGTGGGGGGGGGGGGAGGTCTAAGGCTATGCGGGGCGGAGCGGGTTGAAGTGTGCCTTTTGAAAACTAACGTGCGGCGGGGCGGGTTCAGGTGTTTTTTTTGAAAACTAACGCGGGGCGGTGCGGGTTCAAGTGTTTTTTTTATAAAACTAACGGTGGGCGGGGCGAGTTGAAGTGGTTTTTTTGAAAACTAACGCGGGGCGGGGCAGGTTCAAGTGTTTTTTTTTTAAACTAACGTGGGCAGGGCGAGTTGAAGTGATTTTTTTGAAAACTAACGCAGGGCGGGTTGAAGTGGTTTTTTTAGAAAACTAACGTGGGGCGGGACGGGTTGTAGGTAGATGCAATTTTATATGGGTTGAGCATTATTTAAGATAAATTTCTTTAAACTATTCAAGATAGTAAATGAAAATGGTTCATTTCCAATTGTCCTCTAAAAAATATATTTTTTAAAATTCAGTATCGTATTAAATTAATACAACTTAATAAAAAAATGTATTTATTTTTATGAGATATAATTTTAGTATCAAACTTAACTAGAAAAAGGATGTATTAAAAAATTATGCGATGCAGGTCTATGCGGGCGGGGTGGGGCAGTTAATTGTTATGCGGGGCGGGTGGATTGAAATTTTGCTGGTTAAGCTCAACCCGACAGCTCCATTGCCATCCCTATCATTATTGCCATCTCTACGAATGTTGCAATGATACAAATAAAGATATTTTCTCACTGCTACCTTTTTTTTAGTGATTGTTTCTTTATAAGCTAAATTGTTATTGTAAAGCTTGAAGAATCATTATTCTAATGCCAACTATGACAGGAAGGAAAACCTCTTGTTCCTAATGTGGTGAGACGAGCTGAACAAATGCTTGTCAATGACACGTGAGTTGGTTGCTGAATTAGACACTTATCTTATGAGAAGATATAATCACTTGAAACCATCATATTAATTTAAGGCTACTATATAATGTAGGTCTCGTGTGAAGGAATATCTCTCAATTACTGGAATAGCCGATTTTAACAAATTGAGTGCCAAGCTCATATTTGGTGCTGACAG</genome_strand>
        <mrna_strand>TTGAACTTGTACTCTAAAATTCCAACTCTAATGGCAGATTCTGTTTTTGCTCATGTTGTTCGTGCTCCTGAAGATCCCATCTTAGGG...........................................................................................................................................................................GTAACAGTTGCTTATAACAATGATAGCAGCCCAGTCAAAGTGAATTTGGGTGTTGGCGCATATCGAACTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATGCGGGCGGGGTGGGGCAGTTAATTGTTATGCGGGGCGGGTGGATTGAAATTTTGCTGGTTAAGCTCAACCCGACAGCTCCATTGCCATCCCTATCATTATTGCCATCTCTACGAATGTTGCAATGATACAAATAAAGATATTTTCTCACTGCTACCTTTTTTTTAGTGATTGTTTCTTTATAAGCTAAATTGTTATTGTAAAGCTTGAAGAATCATTATTCTAATGCCAACTATGACAGGAAGGAAAACCTCTTGTTCCTAATGTGGTGAGACGAGCTGAACAAATGCTTGTCAATGACAC...........................................................................................GTCTCGTGTGAAGGAATATCTCTCAATTACTGGAATAGCCGATTTTAACAAATTGAGTGCCAAGCTCATATTTGGTGCTGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>27</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="48060" PGL_stop="48396"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48060" e_stop="48396"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="48060" e_stop="48396" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48060" stop="48396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTACATCATTAACAATTACCATAAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGCACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCTCTAAATCTACGTGTCGGTTCGTGACACCCGATCC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  T  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  S  T  T  S  L  T  I  T  I  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  S  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  A  R  D  T  P  L  P  H  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  N  L  R  V  G  S  *  H  P  I  </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  K  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  A  L  H  H  *  Q  L  P  *  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  H  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  H  V  T  L  R  S  L  I  F  I  N  P  L  V  S  V  R  D  T  P  I  L  *  I  Y  V  S  V  R  D  T  R  S </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  N  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  H  Y  I  I  N  N  Y  H  K  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  S  K  S  T  C  R  F  V  T  P  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLe0007L14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="50168" PGL_stop="49406"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50168" e_stop="49406"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="50168" e_stop="49406" e_length="763"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50168" stop="49406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339540" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTCGATAGAGAAAGTGAAGTCTATTCAAGAAAAGCTTCTAGCGGCGCAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAGGGTGAACAAGTCTTGTTGAAAGTTTCACCAATGAAAGGGGTGATGCGGTTTGGTAAAAGGGGTAAACTAAGTCCAAGGTACATTGGACCATTTGAAGTACTTAAGCGAGTAGGAGAGGTGGCTTATGAGTTAGCCTTGCCTCCAGGGCTGTCCGGAGTACATCCGGTATTCCATGTGTCGATGTTAAAAAGATACCATGGGGATGGAAACTACATTATCCGTTGGGATTCAGTTTTGCTTGATGAGAACTTGTCTTATGAGGAGGAGCCTGTTGCTATTTTAGATAGAGAAGTTCGCAAGTTGAGGTCAAGAGAGATTGCATCCATCAAGGTGCGATGGAAGAATCGACCCGTTTAAGAAGCCACTTGGGAGAAGGAGGCGGATATGCGAGAAAAATACCCACATCTGTTTACAGATTCAGGTACTCCTTTTTGCCCTTGTTTTCCTTCTTTTGATCGTTTGGGGACGAACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTCTGGAAAAATAGGCTGAGGCGATGGACCCAACGACGGACCGTCATGGGCACGACGGACCGTCGTAGGGTCTCGTTTCAAAACACTTAGAAAAACTGAAAATTGGGTACTGAAAATCGACTCTCT</gDNA_template>
            <first_frame> K  F  D  R  E  S  E  V  Y  S  R  K  A  S  S  G  A  K  *  T  K  R  I  C  R  S  K  G  *  R  L  R  V  H  G  G  *  T  S  L  V  E  S  F  T  N  E  R  G  D  A  V  W  *  K  G  *  T  K  S  K  V  H  W  T  I  *  S  T  *  A  S  R  R  G  G  L  *  V  S  L  A  S  R  A  V  R  S  T  S  G  I  P  C  V  D  V  K  K  I  P  W  G  W  K  L  H  Y  P  L  G  F  S  F  A  *  *  E  L  V  L  *  G  G  A  C  C  Y  F  R  *  R  S  S  Q  V  E  V  K  R  D  C  I  H  Q  G  A  M  E  E  S  T  R  L  R  S  H  L  G  E  G  G  G  Y  A  R  K  I  P  T  S  V  Y  R  F  R  Y  S  F  L  P  L  F  S  F  F  *  S  F  G  D  E  R  W  V  N  W  Y  L  L  *  R  P  V  *  S  F  *  A  A  D  F  I  L  E  K  *  A  E  A  M  D  P  T  T  D  R  H  G  H  D  G  P  S  *  G  L  V  S  K  H  L  E  K  L  K  I  G  Y  *  K  S  T  L  </first_frame>
            <second_frame>  N  S  I  E  K  V  K  S  I  Q  E  K  L  L  A  A  Q  S  R  Q  K  E  Y  A  D  R  K  V  R  D  L  E  F  M  E  G  E  Q  V  L  L  K  V  S  P  M  K  G  V  M  R  F  G  K  R  G  K  L  S  P  R  Y  I  G  P  F  E  V  L  K  R  V  G  E  V  A  Y  E  L  A  L  P  P  G  L  S  G  V  H  P  V  F  H  V  S  M  L  K  R  Y  H  G  D  G  N  Y  I  I  R  W  D  S  V  L  L  D  E  N  L  S  Y  E  E  E  P  V  A  I  L  D  R  E  V  R  K  L  R  S  R  E  I  A  S  I  K  V  R  W  K  N  R  P  V  *  E  A  T  W  E  K  E  A  D  M  R  E  K  Y  P  H  L  F  T  D  S  G  T  P  F  C  P  C  F  P  S  F  D  R  L  G  T  N  D  G  *  I  G  I  Y  C  N  D  L  F  S  R  F  E  Q  Q  I  L  F  W  K  N  R  L  R  R  W  T  Q  R  R  T  V  M  G  T  T  D  R  R  R  V  S  F  Q  N  T  *  K  N  *  K  L  G  T  E  N  R  L  S </second_frame>
            <third_frame>   I  R  *  R  K  *  S  L  F  K  K  S  F  *  R  R  K  V  D  K  K  N  M  Q  I  E  R  L  E  T  *  S  S  W  R  V  N  K  S  C  *  K  F  H  Q  *  K  G  *  C  G  L  V  K  G  V  N  *  V  Q  G  T  L  D  H  L  K  Y  L  S  E  *  E  R  W  L  M  S  *  P  C  L  Q  G  C  P  E  Y  I  R  Y  S  M  C  R  C  *  K  D  T  M  G  M  E  T  T  L  S  V  G  I  Q  F  C  L  M  R  T  C  L  M  R  R  S  L  L  L  F  *  I  E  K  F  A  S  *  G  Q  E  R  L  H  P  S  R  C  D  G  R  I  D  P  F  K  K  P  L  G  R  R  R  R  I  C  E  K  N  T  H  I  C  L  Q  I  Q  V  L  L  F  A  L  V  F  L  L  L  I  V  W  G  R  T  M  G  K  L  V  S  I  V  T  T  C  L  V  V  L  S  S  R  F  Y  S  G  K  I  G  *  G  D  G  P  N  D  G  P  S  W  A  R  R  T  V  V  G  S  R  F  K  T  L  R  K  T  E  N  W  V  L  K  I  D  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0007L14.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50167" stop="49706"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSIEKVKSIQEKLLAAQSRQKEYADRKVRDLEFMEGEQVLLKVSPMKGVMRFGKRGKLSPRYIGPFEVLKRVGEVAYELALPPGLSGVHPVFHVSMLKRYHGDGNYIIRWDSVLLDENLSYEEEPVAILDREVRKLRSREIASIKVRWKNRPV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="50229" PGL_stop="50405"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50229" e_stop="50405"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="50229" e_stop="50405" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50229" stop="50405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCTTCCAACACTTGAATCGTTCTCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  R  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  L  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  G  S  Y  P  N  G  H  Q  T  L  S  H  M  H  E  A  Y  L  P  T  L  E  S  F  S  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  A  T  K  L  Y  H  T  C  T  K  H  I  F  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLe0007L14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="51706" PGL_stop="53463"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51706" e_stop="53463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="51706" e_stop="53463" e_length="1758"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51706" stop="52418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52226" stop="52884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52295" stop="53052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52698" stop="53028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52905" stop="53463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335930" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACGAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGATACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGTCCCAAGAAGGACATTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAAATTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCCTTCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATACCATTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCATAATGCCCATACCTCGTTCAAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATTTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCGCGGACTACCAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTTATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCGACAATTCCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTTACAAGACAAGACCTACACACCATTTTAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGCAATTCACAATGTAAGTTAAGACCATTAGCAAATGCGGAAGATACATAAGAAAATGTGGATCCGGGATCAAATAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTATGCCCGTCACCTCGTCCGTTTTGGTGACCACCATTTCCTCGACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTGTAACTCTGTTTTGGACAATTTCTCCTAATATGTCCAGTCTCCCCACATCCGTAACACTCTCTGGAGTCAAGCATAGGTCTCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</gDNA_template>
            <first_frame> E  S  L  D  E  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  Y  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  S  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  I  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  P  S  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  T  I  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  I  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  I  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  K  A  F  V  *  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  D  T  E  V  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  A  D  Y  Q  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  D  N  S  *  D  N  Q  V  Y  I  S  I  A  P  H  K  S  Y  K  T  R  P  T  H  H  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  Y  V  K  Q  F  T  M  *  V  K  T  I  S  K  C  G  R  Y  I  R  K  C  G  S  G  I  K  *  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  N  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  R  L  S  V  A  P  T  M  L  *  C  S  G  S  S  M  P  V  T  S  S  V  L  V  T  T  I  S  S  T  T  T  P  S  R  K  T  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  V  T  L  F  W  T  I  S  P  N  M  S  S  L  P  T  S  V  T  L  S  G  V  K  H  R  S  L  G  E  V  L  T  G  L  R  W  S  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  R  T  L  S  S  S  V  S  T  I  K  L  T </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  I  A  S  S  Q  N  S  H  L  E  N  L  A  *  K  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  Q  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  I  K  P  L  F  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  F  G  G  I  P  G  R  S  A  G  N  T  S  K  N  S  R  T  T  K  T  D  S  I  E  G  T  W  V  V  L  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  P  K  I  T  K  S  T  *  V  L  L  P  T  K  V  T  R  Q  D  L  H  T  I  L  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  P  L  A  N  A  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  K  R  L  P  V  M  T  T  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  S  P  R  P  F  W  *  P  P  F  P  R  P  P  R  P  P  E  K  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  F  G  Q  F  L  L  I  C  P  V  S  P  H  P  *  H  S  L  E  S  S  I  G  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  L  P  E  P  C  P  L  V  *  A  P  L  N  S   </second_frame>
            <third_frame>   I  P  *  R  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  I  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  V  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  N  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  F  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  Y  H  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  H  N  A  H  T  S  F  K  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  N  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  L  T  T  L  E  V  G  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  R  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  K  T  R  G  L  P  K  P  T  Q  S  K  V  L  G  *  C  Y  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  R  Q  F  L  R  *  P  S  L  H  K  Y  C  S  P  Q  K  L  Q  D  K  T  Y  T  P  F  *  L  S  Q  T  H  P  P  E  *  K  H  E  *  V  C  Q  A  I  H  N  V  S  *  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  R  D  Q  I  I  Q  K  P  C  N  H  K  P  K  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  S  S  V  R  C  P  Y  H  V  V  M  *  W  L  Q  Y  A  R  H  L  V  R  F  G  D  H  H  F  L  D  H  H  A  L  Q  K  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  C  N  S  V  L  D  N  F  S  *  Y  V  Q  S  P  H  I  R  N  T  L  W  S  Q  A  *  V  S  R  R  S  V  D  R  S  E  V  V  P  Q  L  Q  S  V  V  K  T  E  L  V  G  L  S  N  F  P  N  P  V  L  *  C  K  H  H  *  T  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0007L14.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53137" stop="53391"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSMPVTSSVLVTTISSTTTPSRKTASTMTTSTSSYWGSVTLFWTISPNMSSLPTSVTLSGVKHRSLGEVLTGLRWSPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0007L14.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52433" stop="52678"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLFGGIPGRSAGNTSKNSRTTKTDSIEGTWVVLSLRCAKKAKHPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0007L14.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51970" stop="52209"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEVQIWLKNTIHQAHERSRGIRKTKRHHYKFIMPIPRSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0007L14.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52411" stop="52611"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRGSHSIRGYRNGASTRFKIDTEVNIPIWWHTRKICREHIQKLADYQNRLNRRYLGSVILEMCQES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0007L14.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51902" stop="52099"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSKYGLKIPFIKLMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="53722" PGL_stop="52278"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53722" e_stop="53550"/>
            <exon e_start="52805" e_stop="52278"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.229" e_score="0.896"/>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.896">
            <gDNA_exon_boundary e_start="53722" e_stop="53550" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.229">
            <gDNA_intron_boundary i_start="53549" i_stop="52806" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.915">
            <gDNA_exon_boundary e_start="52805" e_stop="52278" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53722" stop="53550"/>
              <exon start="52805" stop="52278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCTAACTGTGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAG : GAATTGTCGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGAGTCGGTTTTGGTAGTCCGCGAGTTTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAAATAGGGATATTGACTTCTGTATCGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTAAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</gDNA_template>
            <first_frame> A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  I  I  P  V  C  H  L  T  V  F  Q  S  T  R  A  N  S  P  V  C  E  G  V  E  V  R  I  A  D  F  G  L  T  D  S  G  N  G  K  I  L  P  R :   N  C  R  F  *  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  G  S  P  R  V  F  G  C  V  P  C  R  S  S  W  Y  A  T  K  *  G  Y  *  L  L  Y  R  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  P  T  S  R  V  V  K  Q  R  L  Y  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  N  V  Y  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  *  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  I  A  A  T  A  K  S  F  Q   : G  I  V  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  N  T  T  Q  V  P  S  I  E  S  V  L  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  N  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  G  M  P  P  N  C  V  S  V  H  K  S  E  F  A  G  L  *  R  G  *  G  Q  N  C  G  F  R  P  Y  R  *  R  Q  R  Q  N  P  S  K  :  E  L  S  I  L  M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  I  T  L  P  K  Y  L  R  L  S  R  F  W  *  S  A  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  V  S  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  P  N  F  K  S  C  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  E  C  V  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0007L14.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53655" stop="53550"/>
                    <exon start="52805" stop="52279"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCFSPQERIRRFVKGLRSELRISALQIAATAKSFQGIVDFDVILGMTWLSPQFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLAHLKDNTTQVPSIESVLVVREFLDVFPADLPGMPPNRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLNKGFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="53935" PGL_stop="54367"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53935" e_stop="54367"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="53935" e_stop="54367" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53935" stop="54367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCTTGAAGATCGGAGGTTTTAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAATGTGCCTATGTCCAATGAGGCCTCCATACGAGGAGCCATAGTGGCTGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGTAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCTACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGTAATCCCTCATTCTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTACCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTTT</gDNA_template>
            <first_frame> P  L  K  I  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  M  S  N  E  A  S  I  R  G  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  V  E  N  T  G  G  A  *  P  *  S  D  N  L  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  P  S  F  C  T  C  S  V  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  T  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  V  L  </first_frame>
            <second_frame>  P  *  R  S  E  V  L  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  M  C  L  C  P  M  R  P  P  Y  E  E  P  *  W  L  H  V  V  L  L  K  P  E  V  L  A  *  K  T  L  E  V  P  D  L  D  Q  T  T  Y  *  D  R  R  E  P  D  *  S  S  L  G  *  V  G  V  V  I  P  H  S  A  L  V  Q  F  P  H  P  P  L  L  L  L  L  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  *  V  L  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  G  P  L  P  L  F  F </second_frame>
            <third_frame>   L  E  D  R  R  F  *  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  C  A  Y  V  Q  *  G  L  H  T  R  S  H  S  G  C  M  L  Y  F  *  N  R  R  C  W  R  R  K  H  W  R  C  L  T  L  I  R  Q  P  T  E  I  G  E  N  L  I  D  H  L  W  G  R  L  G  W  *  S  L  I  L  H  L  F  S  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  R  S  H  Y  P  S  I  R  W  A  R  C  S  S  S  S  P  R  G  R  P  P  T  T  S  T  T  A  P  C  R  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0007L14.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54169" stop="54366"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISGVGWGGNPSFCTCSVSPSSPSLITSSVGGGVTTLVSDGLGARPLPLEDVLPRPLPRPLAAVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="61846" PGL_stop="54374"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61846" e_stop="61539"/>
            <exon e_start="61427" e_stop="61398"/>
            <exon e_start="55696" e_stop="54374"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.831"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.800"/>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.831">
            <gDNA_exon_boundary e_start="61846" e_stop="61539" e_length="308"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="61538" i_stop="61428" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="0.800">
            <gDNA_exon_boundary e_start="61427" e_stop="61398" e_length="30"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="61397" i_stop="55697" i_length="5701"/>
          </intron>
          <exon e_serial="3" e_score="0.934">
            <gDNA_exon_boundary e_start="55696" e_stop="54374" e_length="1323"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61846" stop="61539"/>
              <exon start="61427" stop="61398"/>
              <exon start="55696" stop="54414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54659" stop="54374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGTCTTCGGTGGAGGTAGGTTATGGTTTTTATGCTATTCGTAGTAAACTCTTAATAGCGAATTGTATGTATTGATAGTATTGTAAACCCCTCTATATGCTTAATTGTATGCTTGCATGAATATGATTATGTAATTGTGAATAAATAAGCATGATGAAGTTATTGAATCTCAAATCTTGAAAAGAAACCCTAATTCACTTGTTAATGATGATGCCTTAGTATAAAAGAAGGCTTGATAAATTATATAATAAGATTGATGATGCCTTGGTACAAAAGAAGGCTTGATAAATTATATAATGAGATTGACG : GGATCGGAGTGTCACGTTCTGACACCAGGA : ATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGTGTGTCACGAACCGACACGAAGATTTAGGGGATCGGGTGTCACGAACCGACGTGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGAGGATCGGAGTGTCACGTACCGACACAAGAGTATTAATGAATATGAGGGAGCGGAGTGTCACGTGCCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGTGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTTATGGTAATTGTTAATGATGTAGTGCTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGACCTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGAAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTTTTTTTTTTAGCTTTTAGAATAGTCTTAGTTTAGTCATTTGATCGTAGATGTTCTTGTGATGATGACTTTCATATTTTGGGGAATAATAGATGTTGAATTTAGAAGTTAATGAATTGGTCTTTATTTAATGAGTTTAAGTCTTCCGCATTTCTTTCTGTTGATATTATATTGAAATGTTAAGGTTTAGATTGATTGGTTCTCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGGCCCGGTTTGGGTCGTGACAAACTTGGTATTAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTTAGAGGCTATAAGACTTTAGGGAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGGCCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACAACTACGCCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGACACTGGGGCTGTGG</gDNA_template>
            <first_frame> *  S  S  V  E  V  G  Y  G  F  Y  A  I  R  S  K  L  L  I  A  N  C  M  Y  *  *  Y  C  K  P  L  Y  M  L  N  C  M  L  A  *  I  *  L  C  N  C  E  *  I  S  M  M  K  L  L  N  L  K  S  *  K  E  T  L  I  H  L  L  M  M  M  P  *  Y  K  R  R  L  D  K  L  Y  N  K  I  D  D  A  L  V  Q  K  K  A  *  *  I  I  *  *  D  *  R :   D  R  S  V  T  F  *  H  Q  E :   L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  V  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  R  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  R  I  G  V  S  R  T  D  T  R  V  L  M  N  M  R  E  R  S  V  T  C  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  V  Y  G  I  E  A  *  V  L  M  C  E  L  Y  G  N  C  *  *  C  S  A  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  T  *  P  L  L  L  C  F  L  L  V  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  F  K  P  V  L  L  H  R  K  F  R  V  S  *  C  F  *  L  G  L  D  L  L  L  Q  V  L  M  P  *  T  S  G  M  D  *  L  L  M  F  F  F  *  L  L  E  *  S  *  F  S  H  L  I  V  D  V  L  V  M  M  T  F  I  F  W  G  I  I  D  V  E  F  R  S  *  *  I  G  L  Y  L  M  S  L  S  L  P  H  F  F  L  L  I  L  Y  *  N  V  K  V  *  I  D  W  F  S  H  I  G  G  *  V  W  V  P  V  A  A  R  F  G  S  *  Q  T  W  Y  *  S  I  R  F  V  G  L  I  T  Q  E  Q  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  P  L  E  A  I  R  L  *  G  N  F  T  L  S  F  F  L  S  C  Y  Y  L  S  P  I  G  I  *  A  I  R  I  G  I  W  P  S  S  L  S  F  A  D  G  *  N  *  S  N  N  Y  A  N  T  N  T  G  Q  T  R  N  N  *  A  R  H  W  G  C   </first_frame>
            <second_frame>  S  L  R  W  R  *  V  M  V  F  M  L  F  V  V  N  S  *  *  R  I  V  C  I  D  S  I  V  N  P  S  I  C  L  I  V  C  L  H  E  Y  D  Y  V  I  V  N  K  *  A  *  *  S  Y  *  I  S  N  L  E  K  K  P  *  F  T  C  *  *  *  C  L  S  I  K  E  G  L  I  N  Y  I  I  R  L  M  M  P  W  Y  K  R  R  L  D  K  L  Y  N  E  I  D   : G  I  G  V  S  R  S  D  T  R   : N  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  C  V  T  N  R  H  E  D  L  G  D  R  V  S  R  T  D  V  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  E  C  H  V  P  T  Q  E  Y  *  *  I  *  G  S  G  V  S  R  A  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  D  S  Q  M  C  M  V  L  R  L  E  S  S  C  V  N  F  M  V  I  V  N  D  V  V  L  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  *  P  D  P  Y  F  Y  V  F  F  L  F  I  C  G  V  Q  Q  T  C  H  R  L  Q  L  N  S  N  S  S  Q  S  Y  Y  I  E  N  S  G  *  A  N  A  S  S  L  D  W  I  F  F  F  K  S  *  C  L  E  L  P  A  W  T  S  F  L  C  F  F  F  S  F  *  N  S  L  S  L  V  I  *  S  *  M  F  L  *  *  *  L  S  Y  F  G  E  *  *  M  L  N  L  E  V  N  E  L  V  F  I  *  *  V  *  V  F  R  I  S  F  C  *  Y  Y  I  E  M  L  R  F  R  L  I  G  S  L  T  *  E  G  K  C  G  C  Q  S  R  P  G  L  G  R  D  K  L  G  I  R  A  L  G  S  L  V  S  S  H  K  N  R  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  L  *  R  L  *  D  F  R  E  I  S  L  F  H  S  F  F  R  A  T  T  *  V  Q  L  V  S  R  R  Y  E  L  V  S  G  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  P  T  P  T  P  A  R  Q  E  T  T  E  P  D  T  G  A  V  </second_frame>
            <third_frame>   V  F  G  G  G  R  L  W  F  L  C  Y  S  *  *  T  L  N  S  E  L  Y  V  L  I  V  L  *  T  P  L  Y  A  *  L  Y  A  C  M  N  M  I  M  *  L  *  I  N  K  H  D  E  V  I  E  S  Q  I  L  K  R  N  P  N  S  L  V  N  D  D  A  L  V  *  K  K  A  *  *  I  I  *  *  D  *  *  C  L  G  T  K  E  G  L  I  N  Y  I  M  R  L  T  :  G  S  E  C  H  V  L  T  P  G  :  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T  K  I  *  G  I  G  C  H  E  P  T  C  R  F  R  G  S  G  V  T  N  R  H  V  D  L  E  D  R  S  V  T  Y  R  H  K  S  I  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  M  I  P  K  C  V  W  Y  *  G  L  S  P  H  V  *  T  L  W  *  L  L  M  M  *  C  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  D  L  T  P  T  F  M  F  S  S  C  L  F  V  E  C  S  K  R  A  I  V  F  N  S  T  V  I  Q  A  S  L  T  T  S  K  I  Q  G  E  L  M  L  L  A  W  T  G  S  S  S  S  S  L  D  A  L  N  F  R  H  G  L  A  S  Y  V  F  F  L  A  F  R  I  V  L  V  *  S  F  D  R  R  C  S  C  D  D  D  F  H  I  L  G  N  N  R  C  *  I  *  K  L  M  N  W  S  L  F  N  E  F  K  S  S  A  F  L  S  V  D  I  I  L  K  C  *  G  L  D  *  L  V  L  S  H  R  R  V  S  V  G  A  S  R  G  P  V  W  V  V  T  N  L  V  L  E  H  *  V  R  W  S  H  H  T  R  T  G  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  F  R  G  Y  K  T  L  G  K  F  H  S  F  I  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  A  I  F  T  L  F  R  R  W  L  E  L  E  Q  Q  L  R  Q  H  Q  H  R  P  D  K  K  Q  L  S  Q  T  L  G  L  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0007L14.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55207" stop="54899"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYDITWYILFSILSWPMISTQYPCFDLTPTFMFSSCLFVECSKRAIVFNSTVIQASLTTSKIQGELMLLAWTGSSSSSLDALNFRHGLASYVFFLAFRIVLV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0007L14.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54610" stop="54374"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSFRGYKTLGKFHSFILSFVLLLESNWYLGDTNWYLAIFTLFRRWLELEQQLRQHQHRPDKKQLSQTLGLW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="79613" PGL_stop="80282"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79613" e_stop="79879"/>
            <exon e_start="80033" e_stop="80282"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.948"/>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="79613" e_stop="79879" e_length="267"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="79880" i_stop="80032" i_length="153"/>
          </intron>
          <exon e_serial="2" e_score="0.920">
            <gDNA_exon_boundary e_start="80033" e_stop="80282" e_length="250"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79613" stop="79879"/>
              <exon start="80033" stop="80282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335078" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGTTAATGATGATGCCTTGATATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATACAGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCAGTTCCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTTCGGTACCAGGATAGAATATAAGGATCGGA : TGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAATGATAATGAATCTTGAAATATGTTAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTACTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTGGTTGATTTTATGATATTGCTTAATACATACT</gDNA_template>
            <first_frame> P  N  L  L  C  *  *  *  C  L  D  I  K  E  G  L  M  N  E  S  G  E  I  R  G  S  G  A  T  F  R  Y  Q  D  R  I  Q  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  S  S  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  S  V  P  G  *  N  I  R  I  G  :  C  H  V  P  T  P  G  *  Y  I  E  E  R  S  V  T  Y  R  H  E  G  N  N  D  N  E  S  *  N  M  L  I  Y  P  I  *  *  T  K  F  P  N  E  Y  D  E  E  V  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  T  Y  </first_frame>
            <second_frame>  L  I  Y  F  V  N  D  D  A  L  I  *  K  K  A  *  *  T  K  V  V  R  L  G  D  R  V  P  R  S  G  T  R  I  E  Y  R  S  G  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  *  G  S  D :   V  T  F  R  H  Q  D  S  I  L  R  S  G  V  S  R  T  D  T  R  G  I  M  I  M  N  L  E  I  C  *  Y  I  Q  S  N  E  L  N  S  Q  M  S  M  M  R  R  C  E  S  S  L  M  Y  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  W  L  I  L  *  Y  C  L  I  H  T </second_frame>
            <third_frame>   *  S  T  L  L  M  M  M  P  *  Y  K  R  R  L  D  E  R  K  W  *  D  *  G  I  G  C  H  V  P  V  P  G  *  N  T  D  R  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  Q  F  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  F  G  T  R  I  E  Y  K  D  R   : M  S  R  S  D  T  R  I  V  Y  *  G  A  E  C  H  V  P  T  R  G  E  *  *  *  *  I  L  K  Y  V  N  I  S  N  L  M  N  *  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  T  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  G  *  F  Y  D  I  A  *  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLe0007L14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="80784" PGL_stop="81064"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80784" e_stop="81064"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="80784" e_stop="81064" e_length="281"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80784" stop="81064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACTAGTAGAGTCTTAAGGAACGGTAGGGGGACACCTTTACTTTTCCTTCAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGTTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCGACCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  *  *  S  L  K  E  R  *  G  D  T  F  T  F  P  S  E  A  I  R  L  *  E  N  F  T  L  S  F  F  L  S  C  Y  Y  L  S  P  I  G  I  *  A  I  R  I  V  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  A  N  T  N  T  D  Q  T  R  N  N  *  A  S  H  W  G  C   </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  S  R  V  L  R  N  G  R  G  T  P  L  L  F  L  Q  R  L  *  D  F  R  K  I  S  L  F  H  S  F  F  R  A  T  T  *  V  Q  L  V  S  R  R  Y  E  L  L  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  P  T  P  T  P  T  R  Q  E  T  T  E  P  A  T  G  A  V  </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  L  V  E  S  *  G  T  V  G  G  H  L  Y  F  S  F  R  G  Y  K  T  L  G  K  F  H  S  F  I  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  C  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  R  P  D  K  K  Q  L  S  Q  P  L  G  L  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0007L14.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80828" stop="81064"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGHLYFSFRGYKTLGKFHSFILSFVLLLESNWYLGDTNCYLTIFTLFRRWLELEQRLRQHQHRPDKKQLSQPLGLW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="83781" PGL_stop="81071"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83781" e_stop="81071"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="83781" e_stop="81071" e_length="2711"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83781" stop="83069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83261" stop="82603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83192" stop="82435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82965" stop="82423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82789" stop="82459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82582" stop="82024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82578" stop="81142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81503" stop="81071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACGAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGATACATTAGTAGGTCTTACCCGATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCTATTGATGATAATCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAAAAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCGAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACTACTGAAACCGACTCAATCGAAGACACTTGGGTAGTGTCATCCTTGAGATGTGCCAATAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAACCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCATTGCCCCTACCTTGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCACCACGTCCTCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTTTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGATTGAATTGGTCGGACTGAGTATCTTCCCGAACTCTATCCTCTAGTGTAAGCACAATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGGGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTTACAAATCGGCGAATTCGCTCTTGTGGACTGAAACACAGTTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACTGTTCTACGATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGATCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCTGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTTAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGCGCTCTTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTTC</gDNA_template>
            <first_frame> E  S  L  D  E  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  Y  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  L  L  M  I  I  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  K  N  R  S  T  P  R  R  C  T  W  S  N  K  A  F  V  Q  *  L  L  K  L  C  L  *  L  S  *  L  C  G  S  H  S  I  R  G  Y  R  N  G  A  C  A  R  F  E  I  D  T  E  V  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  D  Y  *  N  R  L  N  R  R  H  L  G  S  V  I  L  E  M  C  Q  *  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  W  R  K  P  S  H  T  Q  N  Y  I  K  T  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  R  L  S  I  A  P  T  L  L  *  C  S  G  S  S  L  P  I  T  S  A  V  L  V  T  T  I  S  S  T  T  T  S  S  R  I  T  A  S  A  M  T  T  S  T  S  N  I  W  R  S  V  T  L  F  W  T  I  S  L  N  M  S  N  L  P  T  S  I  A  L  S  G  F  M  H  R  S  L  R  E  V  L  T  G  R  R  W  T  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  S  S  R  T  L  S  S  S  V  S  T  I  K  L  T  S  L  S  K  P  F  *  C  R  C  R  G  E  V  V  W  L  H  S  F  H  F  Y  H  K  V  Y  H  L  L  E  G  F  C  R  C  R  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  L  Y  K  S  A  N  S  L  L  W  T  E  T  Q  L  G  G  I  P  G  *  C  T  K  L  S  L  I  C  I  D  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  S  G  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  T  H  E  L  N  T  K  L  F  Y  D  T  H  L  V  *  *  L  V  T  V  N  Q  K  I  I  S  I  L  R  F  S  T  L  E  D  R  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  F  Q  W  N  I  H  A  G  S  H  S  S  R  M  L  Y  L  W  S  L  R  C  W  C  R  K  H  W  G  C  L  A  L  I  R  *  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  Q  S  L  I  L  H  L  F  S  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  R  S  H  C  P  S  I  R  W  A  R  R  S  S  S  S  P  R  G  R  P  P  T  T  S  T  T  A  P  C  R  C  S   </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  R  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  Y  *  *  *  S  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  K  K  T  G  A  P  Q  G  D  A  L  G  L  I  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  D  T  W  V  V  S  S  L  R  C  A  N  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  P  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  K  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  S  P  R  P  F  W  *  P  P  F  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  T  F  G  G  L  *  L  F  F  G  Q  Y  L  L  I  C  P  I  S  P  H  P  *  H  S  L  G  S  C  I  G  L  S  E  K  C  *  P  V  G  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  Y  L  P  E  L  Y  P  L  V  *  A  Q  L  N  S  P  P  F  R  N  L  F  D  V  D  V  G  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  I  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  R  R  I  R  S  C  G  L  K  H  S  W  V  A  Y  R  D  N  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  C  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  I  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  G  T  S  M  R  G  A  I  V  A  A  C  C  T  S  G  A  *  G  A  G  A  E  N  T  G  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  P  S  F  C  T  C  L  V  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  L  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  V  L  </second_frame>
            <third_frame>   I  P  *  R  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  I  H  *  *  V  L  P  D  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  K  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  I  T  L  E  V  V  P  L  T  L  L  T  L  R  E  P  F  Y  K  G  V  *  K  W  G  V  C  P  V  R  D  R  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  G  L  L  K  P  T  Q  S  K  T  L  G  *  C  H  P  *  D  V  P  I  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  V  E  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  S  P  N  K  T  Y  T  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  K  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  S  S  V  H  C  P  Y  L  V  V  M  *  W  L  Q  F  A  H  H  L  G  R  F  G  D  H  H  F  L  D  H  H  V  L  Q  N  N  G  L  C  H  D  H  L  Y  L  *  H  L  E  V  C  N  S  F  L  D  N  I  S  *  Y  V  Q  S  P  H  I  H  S  T  L  W  V  H  A  *  V  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  I  E  L  V  G  L  S  I  F  P  N  S  I  L  *  C  K  H  N  *  T  H  L  P  F  E  T  F  L  M  S  M  S  G  *  S  R  L  A  S  L  L  P  L  L  S  Q  S  L  P  P  L  G  R  I  L  P  L  P  L  S  V  R  P  K  S  A  I  L  T  S  T  P  L  Q  I  G  E  F  A  L  V  D  *  N  T  V  G  W  H  T  G  I  M  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  F  G  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  Q  Y  V  T  A  T  T  F  W  R  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  L  R  Y  P  S  C  V  V  A  R  D  S  Q  P  E  N  H  K  H  P  P  I  Q  H  P  *  R  S  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  F  P  M  E  H  P  C  G  E  P  *  *  P  H  V  V  P  L  E  P  E  V  L  V  Q  K  T  L  G  V  S  G  P  D  Q  I  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  S  A  L  V  *  F  P  H  P  P  L  L  L  L  L  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  *  A  L  F  L  F  P  *  R  T  S  S  H  D  L  Y  H  G  P  L  P  L  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0007L14.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82040" stop="81651"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AQLNSPPFRNLFDVDVGVKSSGFTPSTSITKSTTSWKDFAVAAICKAEIRNSDLNPFTNRRIRSCGLKHSWVAYRDNARNLASYALTDILPCSRLKNSSLFLSLKVRGIYFSINKLENEAQVIGGASVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0007L14.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82350" stop="82096"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITSAVLVTTISSTTTSSRITASAMTTSTSNIWRSVTLFWTISLNMSNLPTSIALSGFMHRSLREVLTGRRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0007L14.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81549" stop="81295"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVTVNQKIISILRFSTLEDRRFQFQELTEKFMLIICHYRPSSQTWKRAYFQWNIHAGSHSSRMLYLWSLRCWCRKHWGCLALIR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0007L14.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83054" stop="82809"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAGNTSRNSRTTETDSIEDTWVVSSLRCANKAKHPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0007L14.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83517" stop="83278"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEVQIWLKNPVHQAHERSRGIRKTKRHHYKFVMPIPRSKSSLWHIRCPYFLLMIIGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0007L14.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81294" stop="81073"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAKISQNLIDHLWGRLGWQSLILHLFSFPILPFSYYFLSRWRSHCPSIRWARRSSSSPRGRPPTTSTTAPCRCS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="81138" PGL_stop="81691"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81138" e_stop="81691"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="81138" e_stop="81691" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81138" stop="81691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTAAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCAGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCGATCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATCGTAGAACAGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> A  *  P  I  *  Y  *  G  S  D  S  S  T  D  *  G  S  N  K  R  R  G  G  W  G  N  *  T  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  R  V  I  *  S  G  P  D  T  P  S  V  F  C  T  S  T  S  G  S  R  G  T  T  C  G  Y  Y  G  S  P  H  G  C  S  I  G  N  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  D  L  Q  G  C  *  I  G  G  C  L  *  F  S  G  *  L  S  R  A  T  T  Q  D  G  Y  R  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  Y  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  T  K  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  A  P  E  V  Q  H  A  A  T  M  A  P  R  M  D  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  I  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  Q  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  Q  *  L  L  H  R  L  R  K  *  *  E  K  G  R  M  G  K  L  N  K  C  R  M  R  D  C  H  P  N  L  P  Q  R  *  S  I  R  F  W  L  I  L  A  G  Y  L  I  R  A  R  H  P  Q  C  F  L  H  Q  H  L  R  L  Q  R  Y  N  M  R  L  L  W  L  P  A  W  M  F  H  W  K  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  R  S  S  R  V  L  N  R  R  M  L  M  I  F  W  L  T  V  T  S  Y  Y  T  R  W  V  S  *  N  S  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  I  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0007L14.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81139" stop="81690"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTPPPTEEVIREGEDGETKQVQNEGLPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPAPQAPEVQHAATMAPRMDVPLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPIFKGAESEDAYDFLVDCHELLHKMGIVEQFGVEFVSYQFQGNAKMWWRSHIECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="81765" PGL_stop="83209"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81765" e_stop="81951"/>
            <exon e_start="82696" e_stop="83209"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.882"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.882">
            <gDNA_exon_boundary e_start="81765" e_stop="81951" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81952" i_stop="82695" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.938">
            <gDNA_exon_boundary e_start="82696" e_stop="83209" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81765" stop="81951"/>
              <exon start="82696" stop="83209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGAATTCGCCGATTTGTAAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTT : GATGTAATTCTGGGTATGACTTGGCTTTCTCCACAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTATTGGCACATCTCAAGGATGACACTACCCAAGTGTCTTCGATTGAGTCGGTTTCAGTAGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTCGAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTTTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</gDNA_template>
            <first_frame> A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  I  I  P  V  C  H  P  T  V  F  Q  S  T  R  A  N  S  P  I  C  K  G  V  E  V  R  I  A  D  F  G  L  T  D  S  G  N  G  K  I  L  P  R  G  G  R  L   : *  C  N  S  G  Y  D  L  A  F  S  T  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  I  G  T  S  Q  G  *  H  Y  P  S  V  F  D  *  V  G  F  S  S  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  R  S  R  T  G  H  T  P  H  F  Y  T  P  L  *  N  G  S  R  R  V  K  R  V  K  G  T  T  S  R  V  I  E  Q  R  L  Y  *  T  K  C  I  S  L  G  C  S  G  F  F  C  K  E  E  G  W  E  F  S  N  V  Y  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  I  A  A  T  A  K  S  F  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  L  L  A  H  L  K  D  D  T  T  Q  V  S  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  F  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  G  M  P  P  N  C  V  S  V  H  K  S  E  F  A  D  L  *  R  G  *  G  Q  N  C  G  F  R  P  Y  R  *  R  Q  R  Q  N  P  S  K  R  W  *  T  L :   M  *  F  W  V  *  L  G  F  L  H  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  Y  W  H  I  S  R  M  T  L  P  K  C  L  R  L  S  R  F  Q  *  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  V  S  I  S  N  R  A  H  A  P  F  L  Y  P  L  I  E  W  L  P  Q  S  *  E  S  *  R  H  N  F  K  S  Y  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  L  R  F  F  L  *  R  R  R  M  G  V  F  E  C  V  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0007L14.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81766" stop="81951"/>
                    <exon start="82696" stop="83208"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSELRISALQIAATAKSFQEVVDFDVILGMTWLSPQFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLALLAHLKDDTTQVSSIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLNKGFIRPSASPWGAPVFFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="85262" PGL_stop="85086"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85262" e_stop="85086"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="85262" e_stop="85086" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85262" stop="85086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTCCCATACAATGCTTTAAATGGGGCCATATCAATACTGGAGTGATAGCTATTATTGTATGAAAACTCCACTAAGGGTAGGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  L  N  G  A  I  S  I  L  E  *  *  L  L  L  Y  E  N  S  T  K  G  R  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  S  H  T  M  L  *  M  G  P  Y  Q  Y  W  S  D  S  Y  Y  C  M  K  T  P  L  R  V  G  S  Y  P  N  G  H  Q  T  L  S  H  M  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  P  I  Q  C  F  K  W  G  H  I  N  T  G  V  I  A  I  I  V  *  K  L  H  *  G  *  E  A  I  P  M  A  T  K  L  Y  H  T  C  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLe0007L14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="95169" PGL_stop="100309"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95169" e_stop="95390"/>
            <exon e_start="95562" e_stop="95633"/>
            <exon e_start="96619" e_stop="96680"/>
            <exon e_start="96772" e_stop="96855"/>
            <exon e_start="97556" e_stop="97655"/>
            <exon e_start="97743" e_stop="97863"/>
            <exon e_start="98136" e_stop="98299"/>
            <exon e_start="98438" e_stop="98575"/>
            <exon e_start="98897" e_stop="99018"/>
            <exon e_start="99110" e_stop="99204"/>
            <exon e_start="99356" e_stop="99476"/>
            <exon e_start="99908" e_stop="100309"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.995"/>
          <exon-intron don_prob="0.982" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.759" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.617" e_score="1.000"/>
          <exon-intron don_prob="0.460" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.821" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="95169" e_stop="95390" e_length="222"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="95391" i_stop="95561" i_length="171"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95562" e_stop="95633" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.990">
            <gDNA_intron_boundary i_start="95634" i_stop="96618" i_length="985"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96619" e_stop="96680" e_length="62"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.759">
            <gDNA_intron_boundary i_start="96681" i_stop="96771" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="96772" e_stop="96855" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.949" acc_prob="0.998">
            <gDNA_intron_boundary i_start="96856" i_stop="97555" i_length="700"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="97556" e_stop="97655" e_length="100"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.948">
            <gDNA_intron_boundary i_start="97656" i_stop="97742" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="97743" e_stop="97863" e_length="121"/>
          </exon>
          <intron i_serial="6" don_prob="0.970" acc_prob="0.617">
            <gDNA_intron_boundary i_start="97864" i_stop="98135" i_length="272"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="98136" e_stop="98299" e_length="164"/>
          </exon>
          <intron i_serial="7" don_prob="0.460" acc_prob="1.000">
            <gDNA_intron_boundary i_start="98300" i_stop="98437" i_length="138"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="98438" e_stop="98575" e_length="138"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="98576" i_stop="98896" i_length="321"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="98897" e_stop="99018" e_length="122"/>
          </exon>
          <intron i_serial="9" don_prob="0.969" acc_prob="0.981">
            <gDNA_intron_boundary i_start="99019" i_stop="99109" i_length="91"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="99110" e_stop="99204" e_length="95"/>
          </exon>
          <intron i_serial="10" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="99205" i_stop="99355" i_length="151"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="99356" e_stop="99476" e_length="121"/>
          </exon>
          <intron i_serial="11" don_prob="0.821" acc_prob="0.995">
            <gDNA_intron_boundary i_start="99477" i_stop="99907" i_length="431"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="99908" e_stop="100309" e_length="402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95169" stop="95390"/>
              <exon start="95562" stop="95633"/>
              <exon start="96619" stop="96680"/>
              <exon start="96772" stop="96855"/>
              <exon start="97556" stop="97655"/>
              <exon start="97743" stop="97863"/>
              <exon start="98136" stop="98299"/>
              <exon start="98438" stop="98575"/>
              <exon start="98897" stop="99018"/>
              <exon start="99110" stop="99204"/>
              <exon start="99356" stop="99476"/>
              <exon start="99908" stop="100309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317408" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGTTTTGAACCGCCCACTGTGTCATAGAGATACAGGTGGCGTATTCCACGCAGTTCCCAAAGAAGCGAACAATACTTACTTTTTATTCATTAATTAAAGGAGGAAGGTGTACTGAACTCACCTCCATAACACCGTTGAACTTGTACTCTAAAATTCCAACTCTAATGGCAGATTCTGTTTTTGCTCATGTTGTTCGTGCTCCTGAAGATCCCATCTTAGGG : GTAACAGTTGCTTATAACAATGATAGCAGCCCAGTCAAAGTGAATTTGGGTGTTGGCGCATATCGAACTGAG : GAAGGAAAACCTCTTGTTCCTAATGTGGTGAGACGAGCTGAACAAATGCTTGTCAATGACAC : GTCTCGTGTGAAGGAATATCTCTCAATTACTGGAATAGCCGATTTTAACAAATTGAGTGCCAAGCTCATATTTGGTGCTGACAG : CCCTGCCATTAAAGAGAATAGGGTGACCACTGTTCAGTGTTTGTCGGGCACTGGTTCTCTGAGGGTTGGTGCTGAGTTTCTGGCCAGGCATTATCATGAA : CATACTATATATATACCACAGCCAACATGGGGAAACCATCCTAAGATTTTCACTTTAGCTGGGCTTTCAGTAAAATATTATCGTTACTATGACCCAGCAACGCGAGGCCTGGATTTTCAAG : GATTATTGGATGATCTTACTGCTGCACCCGTTGGTGCAATAGTTCTTCTCCATGCTTGTGCTCATAACCCAACTGGCGTTGATCCAACAATTGACCAGTGGGAGAAAATCAGGCAGTTGATGAGGTCCAAGGGGTTGTTACCTTTCTTTGACAGTGCTTATCAG : GGTTTTGCCAGTGGCAAACTAGATGCAGATGCACAATCTGTCCGCATGTTTGTGGCTGATGGTGGTGAATGTCTTGCAGCTCAGAGTTATGCCAAAAACATGGGACTGTATGGAGAGCGTGTCGGTGCCCTTAGCATT : GTTTGCAAAGATAGCGATGTTGCAAGCAAAGTCGAAAGCCAGCTAAAGATGGTTATAAGGCCAATGTACTCAAATCCGCCGATTCATGGTGCGTCTATTGTTGCCACTATACTCAAGGACAG : ACAAATGTATGATGAATGGACTGTTGAGCTGAAAGCAATGGCTGACAGAATTATTAGCATGCGCCAGCAACTCTATGCTGCCATGCAAGCTCGAG : GTACTCCAGGTGATTGGAGTCATATCATCAAGCAAATTGGGATGTTTACTTTCACAGGATTGAATGCTGAGCAAGTCTCATTCATGACTAGCGAGTATCACATTTACATGACATCTGATGG : GAGAATTAGCATGGCAGGTCTTAGTTCTCGGACAGTTCCTCATCTTGCTGATGCCATGCATGCTGCTATTACTAGGGTGGCCTAGACTAGTTGCATTCAAGAGCAGTTTAACTGAAGATATTAAATCTACTTTCCATGATCGCGTCCTTGTCCTTTGATGCTAAATAAGACTAATGTGTCTATGTGGACATAATGTTTCGGAATTTCATTCTAAAGGAATTTGATGAGGTCTTCTGCGCAGGCGAAATGTCATGAATTTCTTATTTTCTTGCACATGTTTGTTGATTGATGAATTAGAAATATTGGACTCACATACTTGGGAAAATAATAATAATCCTAGGTTGCTTGCTATTGTGAATGATTTTTCTACTTAAAACTATGAAGTGAGTTATGGTGCTTTAC</gDNA_template>
            <first_frame> W  F  *  T  A  H  C  V  I  E  I  Q  V  A  Y  S  T  Q  F  P  K  K  R  T  I  L  T  F  Y  S  L  I  K  G  G  R  C  T  E  L  T  S  I  T  P  L  N  L  Y  S  K  I  P  T  L  M  A  D  S  V  F  A  H  V  V  R  A  P  E  D  P  I  L  G  :  V  T  V  A  Y  N  N  D  S  S  P  V  K  V  N  L  G  V  G  A  Y  R  T  E  :  E  G  K  P  L  V  P  N  V  V  R  R  A  E  Q  M  L  V  N  D  T :   S  R  V  K  E  Y  L  S  I  T  G  I  A  D  F  N  K  L  S  A  K  L  I  F  G  A  D  S :   P  A  I  K  E  N  R  V  T  T  V  Q  C  L  S  G  T  G  S  L  R  V  G  A  E  F  L  A  R  H  Y  H  E  :  H  T  I  Y  I  P  Q  P  T  W  G  N  H  P  K  I  F  T  L  A  G  L  S  V  K  Y  Y  R  Y  Y  D  P  A  T  R  G  L  D  F  Q   : G  L  L  D  D  L  T  A  A  P  V  G  A  I  V  L  L  H  A  C  A  H  N  P  T  G  V  D  P  T  I  D  Q  W  E  K  I  R  Q  L  M  R  S  K  G  L  L  P  F  F  D  S  A  Y  Q  :  G  F  A  S  G  K  L  D  A  D  A  Q  S  V  R  M  F  V  A  D  G  G  E  C  L  A  A  Q  S  Y  A  K  N  M  G  L  Y  G  E  R  V  G  A  L  S  I  :  V  C  K  D  S  D  V  A  S  K  V  E  S  Q  L  K  M  V  I  R  P  M  Y  S  N  P  P  I  H  G  A  S  I  V  A  T  I  L  K  D  R :   Q  M  Y  D  E  W  T  V  E  L  K  A  M  A  D  R  I  I  S  M  R  Q  Q  L  Y  A  A  M  Q  A  R   : G  T  P  G  D  W  S  H  I  I  K  Q  I  G  M  F  T  F  T  G  L  N  A  E  Q  V  S  F  M  T  S  E  Y  H  I  Y  M  T  S  D  G :   R  I  S  M  A  G  L  S  S  R  T  V  P  H  L  A  D  A  M  H  A  A  I  T  R  V  A  *  T  S  C  I  Q  E  Q  F  N  *  R  Y  *  I  Y  F  P  *  S  R  P  C  P  L  M  L  N  K  T  N  V  S  M  W  T  *  C  F  G  I  S  F  *  R  N  L  M  R  S  S  A  Q  A  K  C  H  E  F  L  I  F  L  H  M  F  V  D  *  *  I  R  N  I  G  L  T  Y  L  G  K  *  *  *  S  *  V  A  C  Y  C  E  *  F  F  Y  L  K  L  *  S  E  L  W  C  F   </first_frame>
            <second_frame>  G  F  E  P  P  T  V  S  *  R  Y  R  W  R  I  P  R  S  S  Q  R  S  E  Q  Y  L  L  F  I  H  *  L  K  E  E  G  V  L  N  S  P  P  *  H  R  *  T  C  T  L  K  F  Q  L  *  W  Q  I  L  F  L  L  M  L  F  V  L  L  K  I  P  S  *  G :   *  Q  L  L  I  T  M  I  A  A  Q  S  K  *  I  W  V  L  A  H  I  E  L  R :   K  E  N  L  L  F  L  M  W  *  D  E  L  N  K  C  L  S  M  T   : R  L  V  *  R  N  I  S  Q  L  L  E  *  P  I  L  T  N  *  V  P  S  S  Y  L  V  L  T   : A  L  P  L  K  R  I  G  *  P  L  F  S  V  C  R  A  L  V  L  *  G  L  V  L  S  F  W  P  G  I  I  M  N :   I  L  Y  I  Y  H  S  Q  H  G  E  T  I  L  R  F  S  L  *  L  G  F  Q  *  N  I  I  V  T  M  T  Q  Q  R  E  A  W  I  F  K  :  D  Y  W  M  I  L  L  L  H  P  L  V  Q  *  F  F  S  M  L  V  L  I  T  Q  L  A  L  I  Q  Q  L  T  S  G  R  K  S  G  S  *  *  G  P  R  G  C  Y  L  S  L  T  V  L  I  R :   V  L  P  V  A  N  *  M  Q  M  H  N  L  S  A  C  L  W  L  M  V  V  N  V  L  Q  L  R  V  M  P  K  T  W  D  C  M  E  S  V  S  V  P  L  A  L :   F  A  K  I  A  M  L  Q  A  K  S  K  A  S  *  R  W  L  *  G  Q  C  T  Q  I  R  R  F  M  V  R  L  L  L  P  L  Y  S  R  T   : D  K  C  M  M  N  G  L  L  S  *  K  Q  W  L  T  E  L  L  A  C  A  S  N  S  M  L  P  C  K  L  E  :  V  L  Q  V  I  G  V  I  S  S  S  K  L  G  C  L  L  S  Q  D  *  M  L  S  K  S  H  S  *  L  A  S  I  T  F  T  *  H  L  M   : G  E  L  A  W  Q  V  L  V  L  G  Q  F  L  I  L  L  M  P  C  M  L  L  L  L  G  W  P  R  L  V  A  F  K  S  S  L  T  E  D  I  K  S  T  F  H  D  R  V  L  V  L  *  C  *  I  R  L  M  C  L  C  G  H  N  V  S  E  F  H  S  K  G  I  *  *  G  L  L  R  R  R  N  V  M  N  F  L  F  S  C  T  C  L  L  I  D  E  L  E  I  L  D  S  H  T  W  E  N  N  N  N  P  R  L  L  A  I  V  N  D  F  S  T  *  N  Y  E  V  S  Y  G  A  L  </second_frame>
            <third_frame>   V  L  N  R  P  L  C  H  R  D  T  G  G  V  F  H  A  V  P  K  E  A  N  N  T  Y  F  L  F  I  N  *  R  R  K  V  Y  *  T  H  L  H  N  T  V  E  L  V  L  *  N  S  N  S  N  G  R  F  C  F  C  S  C  C  S  C  S  *  R  S  H  L  R   : G  N  S  C  L  *  Q  *  *  Q  P  S  Q  S  E  F  G  C  W  R  I  S  N  *   : G  R  K  T  S  C  S  *  C  G  E  T  S  *  T  N  A  C  Q  *  H  :  V  S  C  E  G  I  S  L  N  Y  W  N  S  R  F  *  Q  I  E  C  Q  A  H  I  W  C  *  Q  :  P  C  H  *  R  E  *  G  D  H  C  S  V  F  V  G  H  W  F  S  E  G  W  C  *  V  S  G  Q  A  L  S  *   : T  Y  Y  I  Y  T  T  A  N  M  G  K  P  S  *  D  F  H  F  S  W  A  F  S  K  I  L  S  L  L  *  P  S  N  A  R  P  G  F  S  R :   I  I  G  *  S  Y  C  C  T  R  W  C  N  S  S  S  P  C  L  C  S  *  P  N  W  R  *  S  N  N  *  P  V  G  E  N  Q  A  V  D  E  V  Q  G  V  V  T  F  L  *  Q  C  L  S   : G  F  C  Q  W  Q  T  R  C  R  C  T  I  C  P  H  V  C  G  *  W  W  *  M  S  C  S  S  E  L  C  Q  K  H  G  T  V  W  R  A  C  R  C  P  *  H   : C  L  Q  R  *  R  C  C  K  Q  S  R  K  P  A  K  D  G  Y  K  A  N  V  L  K  S  A  D  S  W  C  V  Y  C  C  H  Y  T  Q  G  Q  :  T  N  V  *  *  M  D  C  *  A  E  S  N  G  *  Q  N  Y  *  H  A  P  A  T  L  C  C  H  A  S  S  R :   Y  S  R  *  L  E  S  Y  H  Q  A  N  W  D  V  Y  F  H  R  I  E  C  *  A  S  L  I  H  D  *  R  V  S  H  L  H  D  I  *  W  :  E  N  *  H  G  R  S  *  F  S  D  S  S  S  S  C  *  C  H  A  C  C  Y  Y  *  G  G  L  D  *  L  H  S  R  A  V  *  L  K  I  L  N  L  L  S  M  I  A  S  L  S  F  D  A  K  *  D  *  C  V  Y  V  D  I  M  F  R  N  F  I  L  K  E  F  D  E  V  F  C  A  G  E  M  S  *  I  S  Y  F  L  A  H  V  C  *  L  M  N  *  K  Y  W  T  H  I  L  G  K  I  I  I  I  L  G  C  L  L  L  *  M  I  F  L  L  K  T  M  K  *  V  M  V  L  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0007L14.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95178" stop="95390"/>
                    <exon start="95562" stop="95633"/>
                    <exon start="96619" stop="96680"/>
                    <exon start="96772" stop="96855"/>
                    <exon start="97556" stop="97655"/>
                    <exon start="97743" stop="97863"/>
                    <exon start="98136" stop="98299"/>
                    <exon start="98438" stop="98575"/>
                    <exon start="98897" stop="99018"/>
                    <exon start="99110" stop="99204"/>
                    <exon start="99356" stop="99476"/>
                    <exon start="99908" stop="99992"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1374</number_coding_nucleotides>
                  <number_encoded_amino_acids>458</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TAHCVIEIQVAYSTQFPKKRTILTFYSLIKGGRCTELTSITPLNLYSKIPTLMADSVFAHVVRAPEDPILGVTVAYNNDSSPVKVNLGVGAYRTEEGKPLVPNVVRRAEQMLVNDTSRVKEYLSITGIADFNKLSAKLIFGADSPAIKENRVTTVQCLSGTGSLRVGAEFLARHYHEHTIYIPQPTWGNHPKIFTLAGLSVKYYRYYDPATRGLDFQGLLDDLTAAPVGAIVLLHACAHNPTGVDPTIDQWEKIRQLMRSKGLLPFFDSAYQGFASGKLDADAQSVRMFVADGGECLAAQSYAKNMGLYGERVGALSIVCKDSDVASKVESQLKMVIRPMYSNPPIHGASIVATILKDRQMYDEWTVELKAMADRIISMRQQLYAAMQARGTPGDWSHIIKQIGMFTFTGLNAEQVSFMTSEYHIYMTSDGRISMAGLSSRTVPHLADAMHAAITRVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="95304" e_stop="95390"/>
            <exon e_start="95562" e_stop="95633"/>
            <exon e_start="96374" e_stop="96680"/>
            <exon e_start="96772" e_stop="96855"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.759" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95304" e_stop="95390" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="95391" i_stop="95561" i_length="171"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95562" e_stop="95633" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.966">
            <gDNA_intron_boundary i_start="95634" i_stop="96373" i_length="740"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96374" e_stop="96680" e_length="307"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.759">
            <gDNA_intron_boundary i_start="96681" i_stop="96771" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="96772" e_stop="96855" e_length="84"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95304" stop="95390"/>
              <exon start="95562" stop="95633"/>
              <exon start="96374" stop="96680"/>
              <exon start="96772" stop="96855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317409" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAACTTGTACTCTAAAATTCCAACTCTAATGGCAGATTCTGTTTTTGCTCATGTTGTTCGTGCTCCTGAAGATCCCATCTTAGGG : GTAACAGTTGCTTATAACAATGATAGCAGCCCAGTCAAAGTGAATTTGGGTGTTGGCGCATATCGAACTGAG : GTCTATGCGGGCGGGGTGGGGCAGTTAATTGTTATGCGGGGCGGGTGGATTGAAATTTTGCTGGTTAAGCTCAACCCGACAGCTCCATTGCCATCCCTATCATTATTGCCATCTCTACGAATGTTGCAATGATACAAATAAAGATATTTTCTCACTGCTACCTTTTTTTTAGTGATTGTTTCTTTATAAGCTAAATTGTTATTGTAAAGCTTGAAGAATCATTATTCTAATGCCAACTATGACAGGAAGGAAAACCTCTTGTTCCTAATGTGGTGAGACGAGCTGAACAAATGCTTGTCAATGACAC : GTCTCGTGTGAAGGAATATCTCTCAATTACTGGAATAGCCGATTTTAACAAATTGAGTGCCAAGCTCATATTTGGTGCTGACAG</gDNA_template>
            <first_frame> L  N  L  Y  S  K  I  P  T  L  M  A  D  S  V  F  A  H  V  V  R  A  P  E  D  P  I  L  G  :  V  T  V  A  Y  N  N  D  S  S  P  V  K  V  N  L  G  V  G  A  Y  R  T  E  :  V  Y  A  G  G  V  G  Q  L  I  V  M  R  G  G  W  I  E  I  L  L  V  K  L  N  P  T  A  P  L  P  S  L  S  L  L  P  S  L  R  M  L  Q  *  Y  K  *  R  Y  F  L  T  A  T  F  F  L  V  I  V  S  L  *  A  K  L  L  L  *  S  L  K  N  H  Y  S  N  A  N  Y  D  R  K  E  N  L  L  F  L  M  W  *  D  E  L  N  K  C  L  S  M  T   : R  L  V  *  R  N  I  S  Q  L  L  E  *  P  I  L  T  N  *  V  P  S  S  Y  L  V  L  T  </first_frame>
            <second_frame>  *  T  C  T  L  K  F  Q  L  *  W  Q  I  L  F  L  L  M  L  F  V  L  L  K  I  P  S  *  G :   *  Q  L  L  I  T  M  I  A  A  Q  S  K  *  I  W  V  L  A  H  I  E  L  R :   S  M  R  A  G  W  G  S  *  L  L  C  G  A  G  G  L  K  F  C  W  L  S  S  T  R  Q  L  H  C  H  P  Y  H  Y  C  H  L  Y  E  C  C  N  D  T  N  K  D  I  F  S  L  L  P  F  F  *  *  L  F  L  Y  K  L  N  C  Y  C  K  A  *  R  I  I  I  L  M  P  T  M  T  G  R  K  T  S  C  S  *  C  G  E  T  S  *  T  N  A  C  Q  *  H  :  V  S  C  E  G  I  S  L  N  Y  W  N  S  R  F  *  Q  I  E  C  Q  A  H  I  W  C  *  Q </second_frame>
            <third_frame>   E  L  V  L  *  N  S  N  S  N  G  R  F  C  F  C  S  C  C  S  C  S  *  R  S  H  L  R   : G  N  S  C  L  *  Q  *  *  Q  P  S  Q  S  E  F  G  C  W  R  I  S  N  *   : G  L  C  G  R  G  G  A  V  N  C  Y  A  G  R  V  D  *  N  F  A  G  *  A  Q  P  D  S  S  I  A  I  P  I  I  I  A  I  S  T  N  V  A  M  I  Q  I  K  I  F  S  H  C  Y  L  F  F  S  D  C  F  F  I  S  *  I  V  I  V  K  L  E  E  S  L  F  *  C  Q  L  *  Q  E  G  K  P  L  V  P  N  V  V  R  R  A  E  Q  M  L  V  N  D  T :   S  R  V  K  E  Y  L  S  I  T  G  I  A  D  F  N  K  L  S  A  K  L  I  F  G  A  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0007L14.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95304" stop="95390"/>
                    <exon start="95562" stop="95633"/>
                    <exon start="96374" stop="96505"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNLYSKIPTLMADSVFAHVVRAPEDPILGVTVAYNNDSSPVKVNLGVGAYRTEVYAGGVGQLIVMRGGWIEILLVKLNPTAPLPSLSLLPSLRMLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 99 chains have been computed
$ 
$ memory statistics:
$ 60488 bytes spliced alignments in total
$ 27 spliced alignments have been stored
$ 2240 bytes was the average size of a spliced alignment
$ 21512 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1536 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 122 backtrace matrices have been allocated
$ 
$ date finished: 2008-11-08 18:01:45
-->
